Query 037034
Match_columns 130
No_of_seqs 109 out of 526
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_B V-type sodium ATPase su 100.0 4.6E-33 1.6E-37 199.7 8.7 102 13-127 3-105 (115)
2 2qai_A V-type ATP synthase sub 100.0 7.3E-33 2.5E-37 197.8 7.5 101 13-127 1-104 (111)
3 2d00_A V-type ATP synthase sub 100.0 1.1E-32 3.8E-37 195.8 7.4 101 12-125 3-108 (109)
4 2ov6_A V-type ATP synthase sub 100.0 1.4E-31 4.9E-36 187.6 -2.3 98 13-125 1-100 (101)
5 2i4r_A V-type ATP synthase sub 99.9 8.7E-28 3E-32 169.1 6.8 92 12-119 9-102 (102)
6 3lop_A Substrate binding perip 85.3 7.4 0.00025 29.7 9.5 85 8-98 1-106 (364)
7 2fp4_B Succinyl-COA ligase [GD 84.2 5.9 0.0002 32.6 8.9 99 14-125 265-376 (395)
8 2nu8_B SCS-beta, succinyl-COA 80.9 5.8 0.0002 32.5 7.6 99 14-125 258-369 (388)
9 3n0w_A ABC branched chain amin 79.1 11 0.00038 28.9 8.4 83 10-98 4-104 (379)
10 3i45_A Twin-arginine transloca 78.3 11 0.00039 28.9 8.3 86 8-98 1-104 (387)
11 3i09_A Periplasmic branched-ch 78.1 16 0.00055 27.9 9.1 81 11-97 3-101 (375)
12 4f06_A Extracellular ligand-bi 76.5 13 0.00045 28.7 8.2 83 11-99 4-104 (371)
13 3sg0_A Extracellular ligand-bi 76.3 16 0.00053 27.7 8.4 85 10-98 25-120 (386)
14 3lkb_A Probable branched-chain 74.4 25 0.00087 26.9 9.3 81 10-96 5-103 (392)
15 3ufx_B Succinyl-COA synthetase 74.4 11 0.00037 31.0 7.5 82 13-100 248-342 (397)
16 4gnr_A ABC transporter substra 74.0 26 0.00089 26.4 10.1 83 10-98 5-106 (353)
17 3eaf_A ABC transporter, substr 72.3 31 0.0011 26.5 9.5 82 12-96 4-104 (391)
18 4eyg_A Twin-arginine transloca 71.9 23 0.00079 26.7 8.4 85 11-98 5-103 (368)
19 4evq_A Putative ABC transporte 62.4 41 0.0014 25.3 8.1 82 10-97 14-112 (375)
20 3l49_A ABC sugar (ribose) tran 62.2 20 0.00067 26.2 6.1 88 8-96 1-91 (291)
21 3snr_A Extracellular ligand-bi 61.6 47 0.0016 24.6 8.5 84 11-98 6-100 (362)
22 2lqo_A Putative glutaredoxin R 61.5 11 0.00038 24.5 4.1 33 90-123 54-86 (92)
23 3hut_A Putative branched-chain 61.0 50 0.0017 24.7 9.8 84 11-97 3-102 (358)
24 3n0x_A Possible substrate bind 57.8 60 0.0021 24.7 8.9 84 11-97 3-103 (374)
25 2pbq_A Molybdenum cofactor bio 56.9 31 0.0011 24.8 6.3 23 52-74 53-75 (178)
26 3h5i_A Response regulator/sens 55.7 18 0.00062 23.4 4.4 82 9-101 2-88 (140)
27 3q2i_A Dehydrogenase; rossmann 54.2 69 0.0024 24.7 8.3 99 5-118 6-124 (354)
28 2rdm_A Response regulator rece 53.5 29 0.001 21.7 5.1 13 11-23 4-16 (132)
29 3kto_A Response regulator rece 53.5 28 0.00097 22.3 5.1 77 12-99 6-88 (136)
30 3hyn_A Putative signal transdu 52.4 12 0.00041 28.3 3.4 70 32-102 47-120 (189)
31 3saj_A Glutamate receptor 1; r 52.2 78 0.0027 24.3 8.9 83 10-96 8-96 (384)
32 1nvt_A Shikimate 5'-dehydrogen 52.1 15 0.00052 28.0 4.1 57 8-74 7-71 (287)
33 2csu_A 457AA long hypothetical 50.5 94 0.0032 25.6 8.9 58 42-99 343-412 (457)
34 2pju_A Propionate catabolism o 47.4 32 0.0011 26.0 5.2 83 12-120 106-192 (225)
35 3h5l_A Putative branched-chain 45.0 75 0.0026 24.5 7.2 85 9-96 11-112 (419)
36 2hk9_A Shikimate dehydrogenase 43.1 35 0.0012 25.9 4.8 57 8-74 8-72 (275)
37 2qh8_A Uncharacterized protein 41.9 1E+02 0.0035 22.7 8.3 84 10-97 6-96 (302)
38 2rjo_A Twin-arginine transloca 41.4 39 0.0013 25.3 4.9 89 8-97 1-94 (332)
39 3mwd_A ATP-citrate synthase; A 40.9 76 0.0026 26.3 6.9 85 41-128 302-406 (425)
40 3j21_A 50S ribosomal protein L 40.7 65 0.0022 24.2 6.0 89 9-121 56-151 (216)
41 3k4h_A Putative transcriptiona 40.5 72 0.0025 23.0 6.1 88 8-97 4-98 (292)
42 4h08_A Putative hydrolase; GDS 39.4 90 0.0031 21.4 8.3 70 13-89 21-106 (200)
43 3ipc_A ABC transporter, substr 38.5 1.2E+02 0.0041 22.5 9.3 78 13-97 3-99 (356)
44 3egc_A Putative ribose operon 37.3 71 0.0024 23.1 5.6 87 8-97 4-93 (291)
45 2x7x_A Sensor protein; transfe 37.0 1.3E+02 0.0043 22.4 7.1 87 10-97 4-93 (325)
46 2q5c_A NTRC family transcripti 36.2 37 0.0013 24.8 3.9 84 12-120 94-181 (196)
47 3brs_A Periplasmic binding pro 34.5 59 0.002 23.5 4.7 89 8-97 1-96 (289)
48 3jy6_A Transcriptional regulat 34.5 1.3E+02 0.0043 21.6 8.1 85 9-97 4-91 (276)
49 3qoy_A 50S ribosomal protein L 34.3 1.2E+02 0.0041 23.3 6.7 60 7-83 70-130 (242)
50 3fbt_A Chorismate mutase and s 34.3 90 0.0031 24.2 6.0 57 8-74 1-65 (282)
51 3l6u_A ABC-type sugar transpor 34.2 1.3E+02 0.0044 21.6 6.8 89 8-97 4-95 (293)
52 1geq_A Tryptophan synthase alp 34.2 1.3E+02 0.0046 21.8 8.1 104 13-128 81-198 (248)
53 3kht_A Response regulator; PSI 33.9 91 0.0031 19.8 6.1 77 9-99 2-89 (144)
54 3b48_A Uncharacterized protein 33.7 1.1E+02 0.0039 20.8 6.0 52 68-119 6-61 (135)
55 3hcw_A Maltose operon transcri 33.6 1.2E+02 0.0042 22.0 6.5 87 9-97 4-97 (295)
56 3l07_A Bifunctional protein fo 32.7 71 0.0024 25.3 5.2 53 15-74 39-99 (285)
57 2dvm_A Malic enzyme, 439AA lon 32.5 94 0.0032 25.9 6.1 52 12-73 63-134 (439)
58 3uf6_A LMO1369 protein; struct 31.9 1.8E+02 0.0062 22.7 8.1 80 13-104 44-131 (291)
59 3p2o_A Bifunctional protein fo 31.8 69 0.0024 25.3 5.0 54 15-75 38-99 (285)
60 1w4v_A Thioredoxin, mitochondr 31.6 73 0.0025 20.1 4.4 66 53-121 47-119 (119)
61 3td9_A Branched chain amino ac 31.1 1.4E+02 0.0048 22.3 6.5 86 11-99 15-113 (366)
62 3rst_A Signal peptide peptidas 30.1 93 0.0032 23.2 5.3 50 51-100 30-88 (240)
63 3tnl_A Shikimate dehydrogenase 29.9 1.4E+02 0.0047 23.5 6.5 56 9-74 34-97 (315)
64 3e3m_A Transcriptional regulat 29.6 1.6E+02 0.0054 22.2 6.7 88 8-97 66-155 (355)
65 1dbq_A Purine repressor; trans 29.6 1.5E+02 0.0053 21.1 6.3 88 9-97 4-93 (289)
66 3kjx_A Transcriptional regulat 29.5 1.8E+02 0.0061 21.8 7.7 88 8-97 64-153 (344)
67 1npy_A Hypothetical shikimate 29.2 45 0.0016 25.6 3.5 41 11-62 5-52 (271)
68 3h16_A TIR protein; bacteria T 29.2 35 0.0012 23.6 2.6 36 53-88 61-98 (154)
69 2p2s_A Putative oxidoreductase 29.1 1.9E+02 0.0064 21.9 8.7 56 59-119 58-116 (336)
70 2hz5_A Dynein light chain 2A, 29.0 30 0.001 23.5 2.1 24 52-75 11-35 (106)
71 3huu_A Transcription regulator 28.8 1.2E+02 0.0041 22.2 5.7 88 8-97 18-112 (305)
72 3ct6_A PTS-dependent dihydroxy 28.7 1.4E+02 0.0049 20.4 6.7 51 68-119 3-56 (131)
73 2wwq_5 50S ribosomal protein L 28.5 1.5E+02 0.0052 22.5 6.3 61 9-87 69-129 (234)
74 3btv_A Galactose/lactose metab 27.3 2.4E+02 0.0082 22.6 7.8 44 59-102 81-130 (438)
75 2prs_A High-affinity zinc upta 27.0 29 0.00097 26.7 1.9 38 49-87 206-243 (284)
76 3g1w_A Sugar ABC transporter; 26.8 56 0.0019 23.8 3.5 50 47-97 42-92 (305)
77 1qgu_B Protein (nitrogenase mo 26.3 1.5E+02 0.0051 24.9 6.4 57 11-76 359-422 (519)
78 3hdv_A Response regulator; PSI 26.1 1.2E+02 0.0042 18.8 5.1 52 11-77 6-62 (136)
79 2fep_A Catabolite control prot 25.9 1.9E+02 0.0064 20.9 6.3 87 8-97 12-101 (289)
80 2b7e_A PRE-mRNA processing pro 25.9 20 0.00067 22.2 0.6 16 53-68 3-18 (59)
81 1pea_A Amidase operon; gene re 25.6 2.2E+02 0.0075 21.5 10.2 85 10-97 5-105 (385)
82 3lfh_A Manxa, phosphotransfera 25.5 1.4E+02 0.0048 20.7 5.2 36 53-88 16-57 (144)
83 2wm8_A MDP-1, magnesium-depend 25.4 1.4E+02 0.0047 20.4 5.2 42 13-63 138-180 (187)
84 3pff_A ATP-citrate synthase; p 25.4 1.3E+02 0.0044 27.3 6.1 86 41-129 302-407 (829)
85 3u42_A 50S ribosomal protein L 25.2 2.2E+02 0.0076 21.5 8.1 66 6-88 66-131 (229)
86 2i6x_A Hydrolase, haloacid deh 25.1 44 0.0015 22.7 2.5 40 13-64 168-208 (211)
87 2zay_A Response regulator rece 24.9 51 0.0017 21.1 2.7 16 8-23 4-19 (147)
88 1jlj_A Gephyrin; globular alph 24.9 1.9E+02 0.0064 20.9 6.0 23 52-74 63-85 (189)
89 3o1i_D Periplasmic protein TOR 24.6 40 0.0014 24.5 2.3 87 10-97 3-93 (304)
90 3gt7_A Sensor protein; structu 24.4 86 0.003 20.4 3.8 59 8-77 3-61 (154)
91 2d59_A Hypothetical protein PH 24.3 96 0.0033 21.1 4.1 52 59-119 71-123 (144)
92 3iwt_A 178AA long hypothetical 24.1 1.9E+02 0.0064 20.2 6.9 23 52-74 66-88 (178)
93 2rjn_A Response regulator rece 24.0 1.4E+02 0.0048 19.1 4.8 15 11-25 6-20 (154)
94 3k6e_A CBS domain protein; str 23.9 96 0.0033 21.0 4.1 25 3-27 49-73 (156)
95 3eod_A Protein HNR; response r 23.9 1.3E+02 0.0046 18.5 6.7 43 57-100 42-88 (130)
96 3uug_A Multiple sugar-binding 23.8 92 0.0031 23.0 4.2 53 44-97 37-90 (330)
97 1mio_B Nitrogenase molybdenum 23.3 2.3E+02 0.0078 23.1 6.9 58 11-77 311-374 (458)
98 3l0g_A Nicotinate-nucleotide p 22.7 1.2E+02 0.004 24.3 4.8 63 52-128 217-279 (300)
99 1gh2_A Thioredoxin-like protei 22.7 1.3E+02 0.0043 18.2 4.2 66 53-121 37-107 (107)
100 3q9s_A DNA-binding response re 22.4 2.2E+02 0.0075 20.4 6.8 14 12-25 37-50 (249)
101 3d8u_A PURR transcriptional re 22.1 1.4E+02 0.0048 21.2 4.9 45 51-97 44-88 (275)
102 3bil_A Probable LACI-family tr 22.0 2.6E+02 0.0087 21.0 8.8 73 13-93 185-268 (348)
103 2yxb_A Coenzyme B12-dependent 22.0 2.1E+02 0.007 19.9 5.7 55 24-89 39-94 (161)
104 2l69_A Rossmann 2X3 fold prote 21.9 1.9E+02 0.0065 19.8 5.1 47 16-74 7-57 (134)
105 3od5_A Caspase-6; caspase doma 21.8 2.1E+02 0.0072 21.9 6.1 40 24-73 52-95 (278)
106 3h5o_A Transcriptional regulat 21.3 1.6E+02 0.0054 22.0 5.2 88 8-97 58-147 (339)
107 3h75_A Periplasmic sugar-bindi 21.2 2.2E+02 0.0074 21.2 6.0 52 44-97 38-92 (350)
108 2j32_A Caspase-3; Pro-caspase3 21.1 1.1E+02 0.0037 23.1 4.2 39 25-73 48-90 (250)
109 3kcn_A Adenylate cyclase homol 21.0 1.7E+02 0.0059 18.7 5.8 11 13-23 5-15 (151)
110 3j21_Z 50S ribosomal protein L 21.0 93 0.0032 20.0 3.3 46 53-102 21-68 (99)
111 3nv9_A Malic enzyme; rossmann 20.9 1.1E+02 0.0038 26.2 4.5 70 10-89 88-183 (487)
112 3hs3_A Ribose operon repressor 20.9 2E+02 0.007 20.6 5.6 82 8-97 6-91 (277)
113 2d5c_A AROE, shikimate 5-dehyd 20.9 82 0.0028 23.3 3.4 43 13-64 2-52 (263)
114 1i2a_A 50S ribosomal protein L 20.7 2.7E+02 0.0091 20.8 7.0 69 9-95 54-132 (219)
115 3tqv_A Nicotinate-nucleotide p 20.6 2.9E+02 0.0098 21.7 6.7 91 15-128 179-270 (287)
116 3nkl_A UDP-D-quinovosamine 4-d 20.4 1.2E+02 0.004 19.8 3.8 35 67-101 67-101 (141)
117 2pjk_A 178AA long hypothetical 20.4 1.7E+02 0.0058 20.9 5.0 23 52-74 66-88 (178)
118 2fvy_A D-galactose-binding per 20.4 2.2E+02 0.0077 20.4 5.7 54 43-97 36-90 (309)
119 3dv9_A Beta-phosphoglucomutase 20.3 1.3E+02 0.0044 20.7 4.2 22 13-34 183-205 (247)
120 3q98_A Transcarbamylase; rossm 20.0 1.5E+02 0.0051 24.4 5.1 23 11-33 190-224 (399)
No 1
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=99.98 E-value=4.6e-33 Score=199.70 Aligned_cols=102 Identities=20% Similarity=0.345 Sum_probs=91.7
Q ss_pred cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC-CC
Q 037034 13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN-KP 91 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~-~~ 91 (130)
+|||||||+||++||||+|+++ |+|.+ ++|++++|++++++ |||||+|||++++.+++.|++|+ +.
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~--------~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~~~~~~ 69 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDV--------QHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIERYKGQL 69 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEE--------ECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHHHHTSS
T ss_pred eEEEEEECHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHHHhCCC
Confidence 7999999999999999999963 66644 49999999999988 99999999999999999999996 56
Q ss_pred CcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcccc
Q 037034 92 IPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127 (130)
Q Consensus 92 ~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~~ 127 (130)
.|+|++|||++|++++++++|+++|++|+|+|||..
T Consensus 70 ~P~IveIPs~~g~~~~~~~~i~~~V~~aiG~di~~~ 105 (115)
T 3aon_B 70 TPAIILIPSHQGTLGIGLEEIQNSVEKAVGQNILSG 105 (115)
T ss_dssp SCEEEEECBTTBCCSHHHHHHHHHHHHHTTCC----
T ss_pred CCEEEEECCCCCCCCccHHHHHHHHHHHhCcceEec
Confidence 999999999999999899999999999999999854
No 2
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=99.98 E-value=7.3e-33 Score=197.76 Aligned_cols=101 Identities=30% Similarity=0.413 Sum_probs=82.7
Q ss_pred cEEEEEcchhhHHHHHHhcccccccCCcceEEE-ecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHH--HHHHhhC
Q 037034 13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLI-VDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIR--FLVDSYN 89 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v-~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~--~~I~~~~ 89 (130)
+|||||||+||++||+|+|++++ ++ ++++|+.+|++++|+++++++|||||+|||+++++++ +.++
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~--------~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~i~--- 69 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEA--------YEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVK--- 69 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEE--------EECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCCCS---
T ss_pred CEEEEEECHHHHHHHHHcCCceE--------EEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccccC---
Confidence 48999999999999999999964 55 7888999999999999999999999999999999999 7766
Q ss_pred CCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcccc
Q 037034 90 KPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127 (130)
Q Consensus 90 ~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~~ 127 (130)
.|+|++|||++|+++ ++++|+++|++|+|+|||.-
T Consensus 70 --~P~IleIPs~~g~~~-~~d~i~~~V~~aiG~di~~~ 104 (111)
T 2qai_A 70 --FPIILQIPDKFGSIY-GEDILRDVVRRAIGVELKRL 104 (111)
T ss_dssp --SSEEEEECTTC-------CTHHHHHHHHC-------
T ss_pred --CCEEEEECCCCCCCc-hHHHHHHHHHHHhChhHHhh
Confidence 999999999999998 88999999999999999853
No 3
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=99.97 E-value=1.1e-32 Score=195.81 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=93.9
Q ss_pred CcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC--
Q 037034 12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN-- 89 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~-- 89 (130)
..|||||||+||++||+|+|+++ |+|.+ ++|++++|+++++++|||||+|||++++.+++.+++|+
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~--------~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~ 70 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEG--------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRG 70 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEE--------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTC
T ss_pred ccEEEEEeCHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhC
Confidence 46899999999999999999963 66644 49999999999999999999999999999999999994
Q ss_pred CCCcEEEEcCCCC---CCCChhhhHHHHHHHHhcCCCcc
Q 037034 90 KPIPAILEIPSKD---HPYDPAHDSVLSRVKNLFSAESV 125 (130)
Q Consensus 90 ~~~P~Iv~IPs~~---g~~~~~~d~i~~~V~~AiGvdi~ 125 (130)
+..|+|++|||++ |++ .++++|+++|++|+|+|||
T Consensus 71 ~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~~aiG~di~ 108 (109)
T 2d00_A 71 RDLPVLLPIAGLKEAFQGH-DVEGYMRELVRKTIGFDIK 108 (109)
T ss_dssp CCCCEEEEESCGGGGGSSS-CHHHHHHHHHHHHHSCCCC
T ss_pred CCCeEEEEECCCcccCCCc-chHHHHHHHHHHHhCCccc
Confidence 8899999999999 999 7899999999999999997
No 4
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=99.96 E-value=1.4e-31 Score=187.63 Aligned_cols=98 Identities=20% Similarity=0.334 Sum_probs=88.2
Q ss_pred cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH-HhhC-C
Q 037034 13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV-DSYN-K 90 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I-~~~~-~ 90 (130)
.|||||||+||++||+|+|++++ |+|.++ +|++++|+++++++|||||+|||++++.+++.+ +.+. +
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v-------~~v~~~----ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~~~~~~ 69 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKV-------YETPDI----PATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRKNLNES 69 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEE-------EECCST----TTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHHHHHHH
T ss_pred CEEEEEECHHHHHHHHHcCCCce-------EecCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHHHHhCC
Confidence 47999999999999999999976 667555 999999999999999999999999999999999 5554 7
Q ss_pred CCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034 91 PIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125 (130)
Q Consensus 91 ~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~ 125 (130)
..|+|++|||++ + +.++++++|++|+|+|||
T Consensus 70 ~~P~Iv~IP~~~-~---~~~~i~~~v~~aiG~di~ 100 (101)
T 2ov6_A 70 VQPTVVALGGSG-S---GSTSLREKIKQAVGVDLW 100 (101)
T ss_dssp CCSCEEEECTTS-S---CCCCCCCCCSGGGHHHHH
T ss_pred CCcEEEEECCCC-C---ChhHHHHHHHHHhChHhc
Confidence 999999999999 1 238899999999999987
No 5
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=99.94 E-value=8.7e-28 Score=169.10 Aligned_cols=92 Identities=17% Similarity=0.385 Sum_probs=69.5
Q ss_pred CcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhCC-
Q 037034 12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNK- 90 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~~- 90 (130)
++-+|||||+||++||||+|++++ +.+. +++|++++|+++++++|||||+|||++++++++.|++|+.
T Consensus 9 ~~~~aVIGD~Dtv~GFrLaGi~~~-------~~~~----~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i~~~~~~ 77 (102)
T 2i4r_A 9 SHMLAVVGDPDFTIGFMLAGISDI-------YEVT----SDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDE 77 (102)
T ss_dssp CCEEEEEECHHHHHHHHHTTCCCE-------EECC----SHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTT
T ss_pred ceeEEEEcCHHHHHHHHHcCCCcc-------cCCC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 467999999999999999999964 2133 3599999999999999999999999999999999999974
Q ss_pred -CCcEEEEcCCCCCCCChhhhHHHHHHHHh
Q 037034 91 -PIPAILEIPSKDHPYDPAHDSVLSRVKNL 119 (130)
Q Consensus 91 -~~P~Iv~IPs~~g~~~~~~d~i~~~V~~A 119 (130)
..|+|++|||++|+. .++++|+||
T Consensus 78 ~~~P~IieIPs~~g~~-----~i~~~V~rA 102 (102)
T 2i4r_A 78 KVEPTFVSVGGTGGVE-----EIREKIRKA 102 (102)
T ss_dssp CCSSEEEEEC--------------------
T ss_pred CCccEEEEECCCCCCc-----cHHhHhhcC
Confidence 899999999999983 688888886
No 6
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=85.27 E-value=7.4 Score=29.70 Aligned_cols=85 Identities=7% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcch---------hhHHHHHHh--------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeE
Q 037034 8 PTKSSALIAMIADE---------DTVTGFLLA--------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAI 70 (130)
Q Consensus 8 ~~~~~~kIaVIGD~---------dtv~GFrLa--------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digI 70 (130)
|+...-+|+++... +...|++++ |+.| ++..+++.|...+++...+.+++|+.++.+-.
T Consensus 1 ~t~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G----~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~ 76 (364)
T 3lop_A 1 MSLADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGING----ETIRLVARDDEQKIEQTVRNVRDMARVDNPVA 76 (364)
T ss_dssp ----CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTT----BCEEEEEEECTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CCCCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCC----eEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEE
Confidence 34566889999873 356677765 3322 22335666666667888899999997667766
Q ss_pred EE--EehHHHHHHHH--HHHhhCCCCcEEEEc
Q 037034 71 VL--ISQYVANMIRF--LVDSYNKPIPAILEI 98 (130)
Q Consensus 71 I~--Ite~~a~~i~~--~I~~~~~~~P~Iv~I 98 (130)
|+ .+......+.+ .+++. ..|+|..-
T Consensus 77 iig~~~s~~~~~~~~~~~~~~~--~iP~v~~~ 106 (364)
T 3lop_A 77 LLTVVGTANVEALMREGVLAEA--RLPLVGPA 106 (364)
T ss_dssp EECCCCHHHHHHHHHTTHHHHH--TCCEESCS
T ss_pred EEecCCCHHHHhhCchhhHHhc--CCcEEEcc
Confidence 65 34555666666 66664 37776543
No 7
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=84.16 E-value=5.9 Score=32.60 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=65.0
Q ss_pred EEEEEcchh-----hHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehHHHHH
Q 037034 14 LIAMIADED-----TVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--------SQYVANM 80 (130)
Q Consensus 14 kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--------te~~a~~ 80 (130)
+|++|++-- |.--..+.|.+ -.||.-..-..+.+.+.++|+-+++++++-.||+ ++.+|+.
T Consensus 265 ~Ig~~~nGaGlam~t~D~i~~~Gg~------paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~g 338 (395)
T 2fp4_B 265 NIACFVNGAGLAMATCDIIFLNGGK------PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANG 338 (395)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHH
T ss_pred eEEEEecCchHHHHHHHHHHHcCCC------cCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHH
Confidence 688887731 11123444543 2478777666778999999999999999888886 3557777
Q ss_pred HHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034 81 IRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125 (130)
Q Consensus 81 i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~ 125 (130)
+-+.+.++....|+||-+-+.+ .+.-++.++++ |+.++
T Consensus 339 ii~a~~~~~~~~Pivvrl~G~n------~~~g~~~L~~~-gl~~~ 376 (395)
T 2fp4_B 339 ITKACRELELKVPLVVRLEGTN------VHEAQNILTNS-GLPIT 376 (395)
T ss_dssp HHHHHHHHTCCSCEEEEEEETT------HHHHHHHHHHT-CSCCE
T ss_pred HHHHHHhcCCCCeEEEEcCCCC------HHHHHHHHHHC-CCceE
Confidence 7777777666789999764322 23344455443 66665
No 8
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=80.90 E-value=5.8 Score=32.50 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=66.2
Q ss_pred EEEEEcchh-----hHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehHHHHH
Q 037034 14 LIAMIADED-----TVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--------SQYVANM 80 (130)
Q Consensus 14 kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--------te~~a~~ 80 (130)
+|++|++-- |.--..+.|.+ -.||.-..-..+.+.+.++|+-+++++++-.||+ |+.+|+.
T Consensus 258 ~Ig~~~nGaGl~m~t~D~i~~~Gg~------~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~g 331 (388)
T 2nu8_B 258 NIGCMVNGAGLAMGTMDIVKLHGGE------PANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADG 331 (388)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHH
T ss_pred EEEEEeCCCchhhhhhHHHHHcCCC------cCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHH
Confidence 688887732 22234455543 2468776666678999999999999999888877 3567777
Q ss_pred HHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034 81 IRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125 (130)
Q Consensus 81 i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~ 125 (130)
+-+.+.++....|+||-+.+.+ .+.-++.+++. |+.+.
T Consensus 332 ii~a~~~~~~~~pivvrl~G~n------~~~g~~~l~~~-g~~~~ 369 (388)
T 2nu8_B 332 IIGAVAEVGVNVPVVVRLEGNN------AELGAKKLADS-GLNII 369 (388)
T ss_dssp HHHHHHHHTCCSCEEEEEESTT------HHHHHHHHHTT-CSSEE
T ss_pred HHHHHHhcCCCCeEEEEeCCCC------HHHHHHHHHHC-CCcee
Confidence 7777777656789999774432 23344555543 66655
No 9
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=79.06 E-value=11 Score=28.92 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=54.4
Q ss_pred CCCcEEEEEcc----------hhhHHHHHHh------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE-
Q 037034 10 KSSALIAMIAD----------EDTVTGFLLA------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL- 72 (130)
Q Consensus 10 ~~~~kIaVIGD----------~dtv~GFrLa------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~- 72 (130)
...-+|+++.. .+...|++|+ |+.| ++..+++.|...+++...+..++|+.++++-.|+
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G----~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALG----QPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETT----EECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCC----eEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 34578999875 2456788776 3333 2334666777677888999999999756665555
Q ss_pred -EehHHHHHHHHHHHhhCCCCcEEEEc
Q 037034 73 -ISQYVANMIRFLVDSYNKPIPAILEI 98 (130)
Q Consensus 73 -Ite~~a~~i~~~I~~~~~~~P~Iv~I 98 (130)
.+......+.+.+++. ..|.|..-
T Consensus 80 ~~~s~~~~a~~~~~~~~--~ip~i~~~ 104 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDK--KKLAFITA 104 (379)
T ss_dssp CCCHHHHHHHHHHHHHH--TCEEEECS
T ss_pred CCCcHHHHHHHHHHHHc--CceEEEcC
Confidence 4556666677777764 47877753
No 10
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=78.31 E-value=11 Score=28.93 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=54.3
Q ss_pred CCCCCcEEEEEcch--------hhHHHHHHh--------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEE
Q 037034 8 PTKSSALIAMIADE--------DTVTGFLLA--------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIV 71 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--------dtv~GFrLa--------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII 71 (130)
|+.+.-+|+++... +...|++++ |+.| +++..+++.|...+++...+.+++|+.++++-.|
T Consensus 1 ~s~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~G---g~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~ai 77 (387)
T 3i45_A 1 MSLEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLG---GRPLEVISRDDGGDPGKAVTAAQELLTRHGVHAL 77 (387)
T ss_dssp -CCCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTT---TBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCC---CcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 34566899999652 356677765 3322 0223366666666778889999999976566555
Q ss_pred EE--ehHHHHHHHHHHHhhCCCCcEEEEc
Q 037034 72 LI--SQYVANMIRFLVDSYNKPIPAILEI 98 (130)
Q Consensus 72 ~I--te~~a~~i~~~I~~~~~~~P~Iv~I 98 (130)
+- +......+.+..++. ..|.|..-
T Consensus 78 iG~~~s~~~~a~~~~~~~~--~ip~i~~~ 104 (387)
T 3i45_A 78 AGTFLSHVGLAVSDFARQR--KVLFMASE 104 (387)
T ss_dssp EECCSHHHHHHHHHHHHHH--TCCEEECS
T ss_pred ECCcchHHHHHHHHHHHHc--CceEEecC
Confidence 53 455556666777664 47887754
No 11
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=78.14 E-value=16 Score=27.87 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=53.8
Q ss_pred CCcEEEEEcc----------hhhHHHHHHh------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE-
Q 037034 11 SSALIAMIAD----------EDTVTGFLLA------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI- 73 (130)
Q Consensus 11 ~~~kIaVIGD----------~dtv~GFrLa------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I- 73 (130)
..-+|+++.+ .+...|++++ |+.| ++..+++.|...+++...+.+++|+.++++-.|+-
T Consensus 3 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G----~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 3 DSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNG----KPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETT----EEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCC----eEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 3568888865 2466788776 4433 22335666766678889999999997577666653
Q ss_pred -ehHHHHHHHHHHHhhCCCCcEEEE
Q 037034 74 -SQYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 74 -te~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
+......+.+.+++. ..|.|..
T Consensus 79 ~~s~~~~a~~~~~~~~--~ip~i~~ 101 (375)
T 3i09_A 79 TNSATALSMNQVAAEK--KKVYINI 101 (375)
T ss_dssp SCHHHHHHHHHHHHHH--TCEEEEC
T ss_pred CCcHHHHHHHHHHHHc--CceEEEe
Confidence 455566666777663 4787775
No 12
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=76.55 E-value=13 Score=28.68 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCcEEEEEcc---------hhhHHHHHHh------cccccccCCcceEEEecCC-CcHHHHHHHHHHHhcCCCeeEEE--
Q 037034 11 SSALIAMIAD---------EDTVTGFLLA------GVGNVDLRRKTNYLIVDSK-TTVKAIEDAFKEFTTKEDIAIVL-- 72 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLa------Gi~~~~~~~~~n~~v~~~~-t~~ee~~~~~~~l~~~~digII~-- 72 (130)
+.-||+++.+ .....|++|+ |+.| ++..+++.|.. .+++...++.++|+.++++-.|+
T Consensus 4 d~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G----~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 4 DTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAG----HTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETT----EEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCC----EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3457888865 4566788875 3443 23335555543 35788999999999888887777
Q ss_pred EehHHHHHHHHHHHhhCCCCcEEEEcC
Q 037034 73 ISQYVANMIRFLVDSYNKPIPAILEIP 99 (130)
Q Consensus 73 Ite~~a~~i~~~I~~~~~~~P~Iv~IP 99 (130)
.+......+.+.+++.+ .|.|.+-.
T Consensus 80 ~~S~~~~a~~~~~~~~~--vp~i~~~a 104 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAK--VPMVVMNA 104 (371)
T ss_dssp CSHHHHHHHGGGHHHHT--CCEEESSC
T ss_pred ccccchHHHHHHHHhhc--CCcccccc
Confidence 55666777777777643 77776543
No 13
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=76.26 E-value=16 Score=27.72 Aligned_cols=85 Identities=8% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCCcEEEEEcch---------hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE--EehHHH
Q 037034 10 KSSALIAMIADE---------DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL--ISQYVA 78 (130)
Q Consensus 10 ~~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~--Ite~~a 78 (130)
...-+|+++... +...|++++ ++.++ +++..+++.|...+++...+.+++|+.++.+-.|+ .+....
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i~-G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~ 102 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAAL-PKEIG-GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVS 102 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGS-CSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHHHH
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHH-HHHcC-CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCchhH
Confidence 456889999762 456677764 44331 12233555566667788889999999876665555 345555
Q ss_pred HHHHHHHHhhCCCCcEEEEc
Q 037034 79 NMIRFLVDSYNKPIPAILEI 98 (130)
Q Consensus 79 ~~i~~~I~~~~~~~P~Iv~I 98 (130)
..+.+.+++ ...|.|..-
T Consensus 103 ~~~~~~~~~--~~ip~v~~~ 120 (386)
T 3sg0_A 103 LPLIDIAAE--AKTPLMTMA 120 (386)
T ss_dssp HHHHHHHHH--TTCCEEECC
T ss_pred HHHHHHHHh--cCCeEEEec
Confidence 566666665 457888754
No 14
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=74.44 E-value=25 Score=26.90 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=53.3
Q ss_pred CCCcEEEEEcch---------hhHHHHHHh--------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCC-eeEE
Q 037034 10 KSSALIAMIADE---------DTVTGFLLA--------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKED-IAIV 71 (130)
Q Consensus 10 ~~~~kIaVIGD~---------dtv~GFrLa--------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~d-igII 71 (130)
...-+|+++... +...|++++ |+.|. +..+++.|...+++...+.+++|+.+++ .+||
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~----~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~ii 80 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGV----VFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFL 80 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTE----EEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEE
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCe----EeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 345789999862 567788775 44332 2335566666677888999999997645 4666
Q ss_pred EEehHHHHHHHHHHHhhCCCCcEEE
Q 037034 72 LISQYVANMIRFLVDSYNKPIPAIL 96 (130)
Q Consensus 72 ~Ite~~a~~i~~~I~~~~~~~P~Iv 96 (130)
..+......+.+.+++ ...|.|.
T Consensus 81 g~~s~~~~~~~~~~~~--~~iP~i~ 103 (392)
T 3lkb_A 81 SYATGANLQLKPLIQE--LRIPTIP 103 (392)
T ss_dssp ECCHHHHHHHHHHHHH--HTCCEEE
T ss_pred eCCcHHHHHHHHHHHh--CCceEEe
Confidence 6555555566666665 3478776
No 15
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=74.40 E-value=11 Score=30.99 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=57.3
Q ss_pred cEEEEEcchh-----hHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehHHHH
Q 037034 13 ALIAMIADED-----TVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--------SQYVAN 79 (130)
Q Consensus 13 ~kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--------te~~a~ 79 (130)
-+|++|++-. |.--....|.+ -.||+-.....+.+.+.++|+.+++++++-.|++ ++.+|+
T Consensus 248 g~I~ii~Ng~Gl~~~t~D~i~~~G~~------~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~ 321 (397)
T 3ufx_B 248 GNIGIIGNGAGLVMYTLDLVNRVGGK------PANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAK 321 (397)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCC------BSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHH
T ss_pred CcEEEEecCccHHHHHHHHHHHcCCC------cCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHH
Confidence 4799998842 11123344554 2568777667778999999999999988766554 256777
Q ss_pred HHHHHHHhhCCCCcEEEEcCC
Q 037034 80 MIRFLVDSYNKPIPAILEIPS 100 (130)
Q Consensus 80 ~i~~~I~~~~~~~P~Iv~IPs 100 (130)
.+-+...+++...|+|+...+
T Consensus 322 ~i~~a~~~~~~~kPvvv~~~G 342 (397)
T 3ufx_B 322 GVIRALEEGLLTKPVVMRVAG 342 (397)
T ss_dssp HHHHHHTTTCCCSCEEEEEEE
T ss_pred HHHHHHHhhCCCCcEEEEccC
Confidence 777777665557899987765
No 16
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=73.99 E-value=26 Score=26.41 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=57.1
Q ss_pred CCCcEEEEEcc---------hhhHHHHHHh--------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE
Q 037034 10 KSSALIAMIAD---------EDTVTGFLLA--------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL 72 (130)
Q Consensus 10 ~~~~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~ 72 (130)
.++-||+++.+ .+...|++|+ ||.| ++..+++.|...+++...++.++|+.++.+-+|+
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~G----r~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~ 80 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDG----KQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVV 80 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTT----BEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEE
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCC----eEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEe
Confidence 34568888876 3567788886 5554 3344677777777899999999999887766655
Q ss_pred E--ehHHHHHHHHHHHhhCCCCcEEEEc
Q 037034 73 I--SQYVANMIRFLVDSYNKPIPAILEI 98 (130)
Q Consensus 73 I--te~~a~~i~~~I~~~~~~~P~Iv~I 98 (130)
- +......+.+..++ ...|.|.+-
T Consensus 81 g~~~s~~~~a~~~~~~~--~~vp~i~~~ 106 (353)
T 4gnr_A 81 GPATSGATAAAVANATK--AGVPLISPS 106 (353)
T ss_dssp CCCSHHHHHHHHHHHHH--TTCCEEESS
T ss_pred ccccCcccceehhhhhc--cCcceEeec
Confidence 3 45566666677766 447777643
No 17
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=72.27 E-value=31 Score=26.52 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=51.8
Q ss_pred CcEEEEEcc---------hhhHHHHHHhccccccc-------CC--cceEEEecCCCcHHHHHHHHHHHhcCCCe-eEEE
Q 037034 12 SALIAMIAD---------EDTVTGFLLAGVGNVDL-------RR--KTNYLIVDSKTTVKAIEDAFKEFTTKEDI-AIVL 72 (130)
Q Consensus 12 ~~kIaVIGD---------~dtv~GFrLaGi~~~~~-------~~--~~n~~v~~~~t~~ee~~~~~~~l~~~~di-gII~ 72 (130)
.-+|+++.. .+...|++++ ++.+|. ++ +..+++.|...+++...+.+++|+.++++ +||-
T Consensus 4 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a-~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 4 TINVGLLVDETGPTSDVGKGYSLGAELA-FKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cEEEEEEEcCCCchhhhhHHHHHHHHHH-HHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 468999975 3567788876 222111 12 23356666666778888999999955554 5665
Q ss_pred EehHHHHHHHHHHHhhCCCCcEEE
Q 037034 73 ISQYVANMIRFLVDSYNKPIPAIL 96 (130)
Q Consensus 73 Ite~~a~~i~~~I~~~~~~~P~Iv 96 (130)
.+......+.+.+++. ..|.|.
T Consensus 83 ~~s~~~~a~~~~~~~~--~iP~i~ 104 (391)
T 3eaf_A 83 WGTADTEKLSDQVDTD--KITYIS 104 (391)
T ss_dssp CCHHHHHHHHHHHHHH--TCEEEE
T ss_pred cCcHHHHHHHHHHhhc--CCeEEe
Confidence 5555566666666664 477776
No 18
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=71.90 E-value=23 Score=26.67 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=52.5
Q ss_pred CCcEEEEEcch---------hhHHHHHHhcccccc---cCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE--EehH
Q 037034 11 SSALIAMIADE---------DTVTGFLLAGVGNVD---LRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL--ISQY 76 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLaGi~~~~---~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~--Ite~ 76 (130)
..-+|+++... +...|++++ ++..+ .+++..+++.|...+++...+.+++|+.++++-.|+ .+..
T Consensus 5 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 5 DTFKVGLIVPMTGGQASTGKQIDNAIKLY-IKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp CEEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CcEEEEEEeCCcCcchhccHHHHHHHHHH-HHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 45789998873 355677664 22110 011223566666667788889999999766665555 4555
Q ss_pred HHHHHHHHHHhhCCCCcEEEEc
Q 037034 77 VANMIRFLVDSYNKPIPAILEI 98 (130)
Q Consensus 77 ~a~~i~~~I~~~~~~~P~Iv~I 98 (130)
....+.+.+++. ..|.|..-
T Consensus 84 ~~~~~~~~~~~~--~ip~i~~~ 103 (368)
T 4eyg_A 84 AALAAAPLATQA--KVPEIVMA 103 (368)
T ss_dssp HHHHHHHHHHHH--TCCEEESS
T ss_pred HHHHHHHHHHhC--CceEEecc
Confidence 666666666663 47877653
No 19
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=62.45 E-value=41 Score=25.34 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=51.1
Q ss_pred CCCcEEEEEcc---------hhhHHHHHHh------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE-
Q 037034 10 KSSALIAMIAD---------EDTVTGFLLA------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI- 73 (130)
Q Consensus 10 ~~~~kIaVIGD---------~dtv~GFrLa------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I- 73 (130)
.+..+|+++.. .+...|+.++ |+.| ++..+++.|...+++...+.+++|+.++.+..|+.
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g----~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGG----RSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETT----EEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCC----EEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 45688999965 3566777775 2222 12235555666667888888999987656655553
Q ss_pred -ehHHHHHHHHHHHhhCCCCcEEEE
Q 037034 74 -SQYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 74 -te~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
+......+.+.+.++ ..|.|..
T Consensus 90 ~~s~~~~~~~~~~~~~--~iP~v~~ 112 (375)
T 4evq_A 90 VHSGVAMAMVKIARED--GIPTIVP 112 (375)
T ss_dssp SSHHHHHHHHHHHHHH--CCCEEES
T ss_pred CccHHHHHHHHHHHHc--CceEEec
Confidence 345555666666653 4787764
No 20
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=62.23 E-value=20 Score=26.15 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=41.0
Q ss_pred CCCCCcEEEEEcch--hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIADE--DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
|+.++++||++-.. +....=.+.|++..-....-++.+.+.+.+.+.-.+.++.++.+.==|||+.... .....+.+
T Consensus 1 ~s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~~~~~~ 79 (291)
T 3l49_A 1 MSLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN-LDVLNPWL 79 (291)
T ss_dssp -CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC-HHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhhhHHHH
Confidence 44566899998652 1111112333332111111113444444445666777888875443366655432 11222333
Q ss_pred HhhC-CCCcEEE
Q 037034 86 DSYN-KPIPAIL 96 (130)
Q Consensus 86 ~~~~-~~~P~Iv 96 (130)
+.+. ...|+|.
T Consensus 80 ~~~~~~~iPvV~ 91 (291)
T 3l49_A 80 QKINDAGIPLFT 91 (291)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHHCCCcEEE
Confidence 3332 6688766
No 21
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=61.55 E-value=47 Score=24.64 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=50.4
Q ss_pred CCcEEEEEcch---------hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--ehHHHH
Q 037034 11 SSALIAMIADE---------DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--SQYVAN 79 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--te~~a~ 79 (130)
..-+|+++... +...|++++ ++.++ +++..+++.|...+++...+.+++|+.++.+-.|+. +.....
T Consensus 6 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i~-g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~ 83 (362)
T 3snr_A 6 NEITVGISVTTTGPAAALGIPERNALEFV-VKEIS-GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSV 83 (362)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHGGGGS-CSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHH
T ss_pred CCeEEEEEecccCchhhcCHHHHHHHHHH-HHHhC-CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcHHHH
Confidence 45789999763 345555552 33321 122234555655667888889999998755554443 445555
Q ss_pred HHHHHHHhhCCCCcEEEEc
Q 037034 80 MIRFLVDSYNKPIPAILEI 98 (130)
Q Consensus 80 ~i~~~I~~~~~~~P~Iv~I 98 (130)
.+.+.+.+. ..|.|..-
T Consensus 84 ~~~~~~~~~--~ip~v~~~ 100 (362)
T 3snr_A 84 AISNVANEA--QIPHIALA 100 (362)
T ss_dssp HHHHHHHHH--TCCEEESS
T ss_pred HHHHHHHHc--CccEEEec
Confidence 566666653 47877744
No 22
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=61.52 E-value=11 Score=24.46 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=22.2
Q ss_pred CCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCC
Q 037034 90 KPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123 (130)
Q Consensus 90 ~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvd 123 (130)
+..|.|+ |++..--.++..+.|++.+.++.|.+
T Consensus 54 ~tVP~I~-i~Dg~~l~~~~~~el~~~L~el~gL~ 86 (92)
T 2lqo_A 54 RTVPTVK-FADGSTLTNPSADEVKAKLVKIAGLE 86 (92)
T ss_dssp SCSCEEE-ETTSCEEESCCHHHHHHHHHHHHCCS
T ss_pred CEeCEEE-EeCCEEEeCCCHHHHHHHHHHhcCCc
Confidence 5678764 56544222334678999999999876
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=60.96 E-value=50 Score=24.73 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=50.1
Q ss_pred CCcEEEEEcc---------hhhHHHHHHhccccccc-----CCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--e
Q 037034 11 SSALIAMIAD---------EDTVTGFLLAGVGNVDL-----RRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--S 74 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLaGi~~~~~-----~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--t 74 (130)
+..+|+++.. .+...|++++ ++.++. +++..+++.|...+++...+.+++|+.++.+-.|+. +
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a-~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQ-LDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHH-HHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 4578999876 2455666654 111110 112235555666667888889999996666655554 3
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEE
Q 037034 75 QYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 75 e~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
......+.+.+.+ ...|+|..
T Consensus 82 s~~~~~~~~~~~~--~~iP~v~~ 102 (358)
T 3hut_A 82 STVSMAAGSIYGK--EGMPQLSP 102 (358)
T ss_dssp HHHHHHHHHHHHH--HTCCEEES
T ss_pred cHHHHHHHHHHHH--CCCcEEec
Confidence 4455555666665 34788775
No 24
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=57.82 E-value=60 Score=24.72 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCcEEEEEcc---------hhhHHHHHHh------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--
Q 037034 11 SSALIAMIAD---------EDTVTGFLLA------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI-- 73 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLa------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I-- 73 (130)
..-+|+++.+ .+...|++|+ |-.++. +++..+++.|...+++...++.++|+.++++-.|+=
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLD-GRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcC-CEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 3468888865 3667788875 211111 123446777777778999999999998777766664
Q ss_pred ehHHHHHHHHHHHhhCCCCcEEEE
Q 037034 74 SQYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 74 te~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
+...+..+.+..++++ .|.|..
T Consensus 82 ~s~~~~a~~~~~~~~~--ip~i~~ 103 (374)
T 3n0x_A 82 SSAAALADLPVAEENK--KILIVE 103 (374)
T ss_dssp SHHHHHHHHHHHHHHT--CCEEEC
T ss_pred CcHHHHHHHHHHHHcC--ccEEEc
Confidence 3455666677777643 676653
No 25
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=56.85 E-value=31 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe
Q 037034 52 VKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 52 ~ee~~~~~~~l~~~~digII~It 74 (130)
.+++.++|++++++.++-+|++|
T Consensus 53 ~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 53 RDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC
Confidence 68999999999864467788888
No 26
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=55.66 E-value=18 Score=23.38 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=35.5
Q ss_pred CCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHH-----HHHH
Q 037034 9 TKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVAN-----MIRF 83 (130)
Q Consensus 9 ~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~-----~i~~ 83 (130)
+.+..+|.++.|.....-..-.-+... +|.+... .+..+++..+.+...+.+|++.-.+.+ .+-.
T Consensus 2 ~~~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~----~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~ 71 (140)
T 3h5i_A 2 SLKDKKILIVEDSKFQAKTIANILNKY------GYTVEIA----LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTAL 71 (140)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHT------TCEEEEE----SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHH
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHc------CCEEEEe----cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHH
Confidence 334578999998554332211111100 0222221 222344444433356778888744311 1222
Q ss_pred HHHhhCCCCcEEEEcCCC
Q 037034 84 LVDSYNKPIPAILEIPSK 101 (130)
Q Consensus 84 ~I~~~~~~~P~Iv~IPs~ 101 (130)
.+.+. ...|+|+.-...
T Consensus 72 ~l~~~-~~~~ii~ls~~~ 88 (140)
T 3h5i_A 72 AIQQI-SELPVVFLTAHT 88 (140)
T ss_dssp HHHHH-CCCCEEEEESSS
T ss_pred HHHhC-CCCCEEEEECCC
Confidence 22332 457877655443
No 27
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=54.15 E-value=69 Score=24.71 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=52.2
Q ss_pred CCCCCCCCcEEEEEcc----hhhHHHHHHh--cccccccCCcceEEEecCCCcHHHHHHH-----------HHHHhcCCC
Q 037034 5 AQIPTKSSALIAMIAD----EDTVTGFLLA--GVGNVDLRRKTNYLIVDSKTTVKAIEDA-----------FKEFTTKED 67 (130)
Q Consensus 5 ~~~~~~~~~kIaVIGD----~dtv~GFrLa--Gi~~~~~~~~~n~~v~~~~t~~ee~~~~-----------~~~l~~~~d 67 (130)
+|.|+.+..+|||||= ...+..++-. |++- ..+.+.+ ++.+++. +++++++++
T Consensus 6 ~~m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~l--------vav~d~~--~~~~~~~~~~~~~~~~~~~~~ll~~~~ 75 (354)
T 3q2i_A 6 IPPITDRKIRFALVGCGRIANNHFGALEKHADRAEL--------IDVCDID--PAALKAAVERTGARGHASLTDMLAQTD 75 (354)
T ss_dssp CCCCCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEE--------EEEECSS--HHHHHHHHHHHCCEEESCHHHHHHHCC
T ss_pred eecCCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEE--------EEEEcCC--HHHHHHHHHHcCCceeCCHHHHhcCCC
Confidence 4556667789999995 3444455443 4431 1233442 2333322 466777666
Q ss_pred eeEEEEehH---HHHHHHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHH
Q 037034 68 IAIVLISQY---VANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKN 118 (130)
Q Consensus 68 igII~Ite~---~a~~i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~ 118 (130)
+-+++|+-. -++.+...++ ...+++++=|--... .+-..+.+..++
T Consensus 76 ~D~V~i~tp~~~h~~~~~~al~---~gk~v~~EKP~a~~~--~~~~~l~~~a~~ 124 (354)
T 3q2i_A 76 ADIVILTTPSGLHPTQSIECSE---AGFHVMTEKPMATRW--EDGLEMVKAADK 124 (354)
T ss_dssp CSEEEECSCGGGHHHHHHHHHH---TTCEEEECSSSCSSH--HHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHH---CCCCEEEeCCCcCCH--HHHHHHHHHHHH
Confidence 666666533 2344444444 557888887753322 122445555544
No 28
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=53.54 E-value=29 Score=21.72 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=9.4
Q ss_pred CCcEEEEEcchhh
Q 037034 11 SSALIAMIADEDT 23 (130)
Q Consensus 11 ~~~kIaVIGD~dt 23 (130)
+..+|.++.|...
T Consensus 4 ~~~~ilivdd~~~ 16 (132)
T 2rdm_A 4 EAVTILLADDEAI 16 (132)
T ss_dssp SSCEEEEECSSHH
T ss_pred CCceEEEEcCcHH
Confidence 3478999988553
No 29
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=53.51 E-value=28 Score=22.25 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=37.8
Q ss_pred CcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHH------HHHHHH
Q 037034 12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVAN------MIRFLV 85 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~------~i~~~I 85 (130)
..+|.++.|.....-..-.-++.. +|.+... .+..++++ ++....+.+|++.-.+.+ .+-..+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~----~~~~~a~~-~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l 74 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPL------DVTIQCF----ASAESFMR-QQISDDAIGMIIEAHLEDKKDSGIELLETL 74 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTS------SSEEEEE----SSHHHHTT-SCCCTTEEEEEEETTGGGBTTHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CcEEEEe----CCHHHHHH-HHhccCCCEEEEeCcCCCCCccHHHHHHHH
Confidence 468999998655443322222210 1333222 23334444 445677999999865543 122222
Q ss_pred HhhCCCCcEEEEcC
Q 037034 86 DSYNKPIPAILEIP 99 (130)
Q Consensus 86 ~~~~~~~P~Iv~IP 99 (130)
.+.....|.|+.-.
T Consensus 75 ~~~~~~~~ii~~s~ 88 (136)
T 3kto_A 75 VKRGFHLPTIVMAS 88 (136)
T ss_dssp HHTTCCCCEEEEES
T ss_pred HhCCCCCCEEEEEc
Confidence 22234567666543
No 30
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=52.40 E-value=12 Score=28.34 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred ccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHH--HHHHHHHHh-h-CCCCcEEEEcCCCC
Q 037034 32 VGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVA--NMIRFLVDS-Y-NKPIPAILEIPSKD 102 (130)
Q Consensus 32 i~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a--~~i~~~I~~-~-~~~~P~Iv~IPs~~ 102 (130)
++.++.|.++ |.+.|...=++.+++-|++-+++.+.-|++|++... ..++.+|+. . +...|+|+.-|+..
T Consensus 47 F~F~D~Hd~~-y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 47 FPFNDAHDKT-YNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp SSCCBTTTTC-CCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCC
T ss_pred eeecchhhcc-ccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECCcc
Confidence 4444555554 555443211578999999999999999999998854 467777776 3 47899999999955
No 31
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=52.25 E-value=78 Score=24.30 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=54.4
Q ss_pred CCCcEEEEEcch---hhHHHHHHhcccccccCCcceEEEecCCC-cHHHHHHHHHHHhcCCCeeEEE--EehHHHHHHHH
Q 037034 10 KSSALIAMIADE---DTVTGFLLAGVGNVDLRRKTNYLIVDSKT-TVKAIEDAFKEFTTKEDIAIVL--ISQYVANMIRF 83 (130)
Q Consensus 10 ~~~~kIaVIGD~---dtv~GFrLaGi~~~~~~~~~n~~v~~~~t-~~ee~~~~~~~l~~~~digII~--Ite~~a~~i~~ 83 (130)
...-||+++.+. ....||+|| ++.+|...+..+++.|... ++.++.++.++|+.+ ++..|+ .+...+..+..
T Consensus 8 ~~~ikIG~~~~~sg~~~~~a~~lA-v~~iN~~g~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~S~~~~a~~~ 85 (384)
T 3saj_A 8 PNNIQIGGLFPNQQSQEHAAFRFA-LSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYERRTVNMLTS 85 (384)
T ss_dssp CSEEEEEEEESCSSSHHHHHHHHH-HTTCCSSSEEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCCHHHHHHHHH
T ss_pred CcceeEEEEecCCCHHHHHHHHHH-HHHHhcCCccceeeEecccCchhhHHHHHHHHHhc-CeEEEECCCCHHHHHHHHH
Confidence 455789999774 788999986 6666554344466666443 678888899999865 554444 23445566666
Q ss_pred HHHhhCCCCcEEE
Q 037034 84 LVDSYNKPIPAIL 96 (130)
Q Consensus 84 ~I~~~~~~~P~Iv 96 (130)
..++++ .|.|-
T Consensus 86 ~~~~~~--iP~is 96 (384)
T 3saj_A 86 FCGALH--VCFIT 96 (384)
T ss_dssp HHHHHT--CCEEE
T ss_pred HhccCC--CCeEe
Confidence 666644 56554
No 32
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=52.13 E-value=15 Score=28.04 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCCCCcEEEEEcch--hh------HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 037034 8 PTKSSALIAMIADE--DT------VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--dt------v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It 74 (130)
++..+++.+|||++ .+ -..|+..|++.. |...+ .+++++.++++.+- ..++.=+.+|
T Consensus 7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~-------y~~~~--~~~~~l~~~i~~l~-~~~~~G~nVt 71 (287)
T 1nvt_A 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYV-------YVAFD--VLPENLKYVIDGAK-ALGIVGFNVT 71 (287)
T ss_dssp CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEE-------EEEEE--CCGGGGGGHHHHHH-HHTCCEEEEC
T ss_pred hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcE-------EEEEE--cCHHHHHHHHHHHH-hCCCCEEEEc
Confidence 45566789999996 44 458889999864 65553 34588888888775 3366566666
No 33
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=50.47 E-value=94 Score=25.60 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=39.2
Q ss_pred eEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe-----------hHHHHHHHHHHHhhCCCCcEEE-EcC
Q 037034 42 NYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS-----------QYVANMIRFLVDSYNKPIPAIL-EIP 99 (130)
Q Consensus 42 n~~v~~~~t~~ee~~~~~~~l~~~~digII~It-----------e~~a~~i~~~I~~~~~~~P~Iv-~IP 99 (130)
|++-...+.+++...++|+.+++++++..|++. ...++.+-+.+.+.....|+++ .+.
T Consensus 343 NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~ 412 (457)
T 2csu_A 343 NPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMA 412 (457)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_pred CCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 455554455679999999999999988777652 2445556666655444578777 444
No 34
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=47.42 E-value=32 Score=26.03 Aligned_cols=83 Identities=8% Similarity=0.159 Sum_probs=52.9
Q ss_pred CcEEEEEcchhhHHHHH----HhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh
Q 037034 12 SALIAMIADEDTVTGFL----LAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS 87 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~ 87 (130)
..|||++|=...+.|+. +.|++-. . |...+ .+|+++.++++. ++++.+|+=.--..+.. ++
T Consensus 106 ~~kIavVg~~~~~~~~~~i~~ll~~~i~-----~-~~~~~----~ee~~~~i~~l~-~~G~~vVVG~~~~~~~A----~~ 170 (225)
T 2pju_A 106 TSSIGVVTYQETIPALVAFQKTFNLRLD-----Q-RSYIT----EEDARGQINELK-ANGTEAVVGAGLITDLA----EE 170 (225)
T ss_dssp TSCEEEEEESSCCHHHHHHHHHHTCCEE-----E-EEESS----HHHHHHHHHHHH-HTTCCEEEESHHHHHHH----HH
T ss_pred CCcEEEEeCchhhhHHHHHHHHhCCceE-----E-EEeCC----HHHHHHHHHHHH-HCCCCEEECCHHHHHHH----HH
Confidence 36999999999988865 6677622 1 44433 499999999887 57788876544433322 22
Q ss_pred hCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhc
Q 037034 88 YNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120 (130)
Q Consensus 88 ~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~Ai 120 (130)
...|.++-- | .++|++-+++|+
T Consensus 171 --~Gl~~vlI~-s--------~eSI~~Ai~eA~ 192 (225)
T 2pju_A 171 --AGMTGIFIY-S--------AATVRQAFSDAL 192 (225)
T ss_dssp --TTSEEEESS-C--------HHHHHHHHHHHH
T ss_pred --cCCcEEEEC-C--------HHHHHHHHHHHH
Confidence 335655421 1 366777777664
No 35
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=45.00 E-value=75 Score=24.54 Aligned_cols=85 Identities=9% Similarity=0.191 Sum_probs=52.2
Q ss_pred CCCCcEEEEEcc---------hhhHHHHHHhccccccc-----CCcceEEEecCC-CcHHHHHHHHHHHhcCCCeeEEEE
Q 037034 9 TKSSALIAMIAD---------EDTVTGFLLAGVGNVDL-----RRKTNYLIVDSK-TTVKAIEDAFKEFTTKEDIAIVLI 73 (130)
Q Consensus 9 ~~~~~kIaVIGD---------~dtv~GFrLaGi~~~~~-----~~~~n~~v~~~~-t~~ee~~~~~~~l~~~~digII~I 73 (130)
....-+||++.. .....||+|+ ++.+|. +++..+++.|.+ .+++.+.++.++|+.++++-.|+=
T Consensus 11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA-~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG 89 (419)
T 3h5l_A 11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMA-ADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIA 89 (419)
T ss_dssp --CCEEEEEEECCSSTTHHHHHHHHHHHHHH-HHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEC
T ss_pred cCCCEEEEEeecCCCcccccCHHHHHHHHHH-HHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEc
Confidence 345688999975 4567788886 222211 123446666654 467889999999998778777763
Q ss_pred --ehHHHHHHHHHHHhhCCCCcEEE
Q 037034 74 --SQYVANMIRFLVDSYNKPIPAIL 96 (130)
Q Consensus 74 --te~~a~~i~~~I~~~~~~~P~Iv 96 (130)
+...+..+.+..++++ .|.|.
T Consensus 90 ~~~s~~~~a~~~~~~~~~--ip~i~ 112 (419)
T 3h5l_A 90 GYNLENGTALHDVAADAG--VIAMH 112 (419)
T ss_dssp SCCSSCSCHHHHHHHHHT--CEEEE
T ss_pred cccchhHHHhHHHHHHcC--CeEEE
Confidence 3333444555555533 56665
No 36
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=43.06 E-value=35 Score=25.85 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCCCcEEEEEcchhh--------HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 037034 8 PTKSSALIAMIADEDT--------VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 8 ~~~~~~kIaVIGD~dt--------v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It 74 (130)
-+..+++.++|||+-. -..|+..|++.. |...+ .+++++.++++.+- ..++.=+.+|
T Consensus 8 ~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~-------y~~~~--~~~~~l~~~i~~l~-~~~~~G~nvt 72 (275)
T 2hk9_A 8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAV-------YLAFE--INPEELKKAFEGFK-ALKVKGINVT 72 (275)
T ss_dssp CCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEE-------EEEEE--CCGGGHHHHHHHHH-HHTCCEEEEC
T ss_pred ccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcE-------EEEEE--CCHHHHHHHHHHHH-hCCCCEEEEC
Confidence 3556688999999632 158899999864 65443 34588888888775 3566666667
No 37
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=41.86 E-value=1e+02 Score=22.74 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCCcEEEEEcc-hhhHHHHHHhccccccc-C-----CcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHH
Q 037034 10 KSSALIAMIAD-EDTVTGFLLAGVGNVDL-R-----RKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIR 82 (130)
Q Consensus 10 ~~~~kIaVIGD-~dtv~GFrLaGi~~~~~-~-----~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~ 82 (130)
.++++||||-+ ......=.+.|++..-. + ++..+.+.+.+.+.+...+.++.|..+.==|||+++......+.
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~ 85 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALV 85 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHH
Confidence 45689999954 11112222334432110 0 11113333444455666777888875432266666654333332
Q ss_pred HHHHhhCCCCcEEEE
Q 037034 83 FLVDSYNKPIPAILE 97 (130)
Q Consensus 83 ~~I~~~~~~~P~Iv~ 97 (130)
. .....|+|..
T Consensus 86 ~----~~~~iPvV~~ 96 (302)
T 2qh8_A 86 S----ATKTIPIVFT 96 (302)
T ss_dssp H----HCSSSCEEEE
T ss_pred h----cCCCcCEEEE
Confidence 2 2567897763
No 38
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=41.38 E-value=39 Score=25.33 Aligned_cols=89 Identities=7% Similarity=0.015 Sum_probs=38.5
Q ss_pred CCCCCcEEEEEcch--hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCC--CeeEEEEehHHHHHHHH
Q 037034 8 PTKSSALIAMIADE--DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKE--DIAIVLISQYVANMIRF 83 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~--digII~Ite~~a~~i~~ 83 (130)
|+.++++||++-.. +....-.+.|++..-....-++.+.+.+.+.+.-.+.++.++.+. ==|||+..... +...+
T Consensus 1 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-~~~~~ 79 (332)
T 2rjo_A 1 MSLGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS-ADARV 79 (332)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-HHHHH
T ss_pred CCCCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-HHHHH
Confidence 34566889998641 111111223332110000011333333334455566788887554 23566554332 22223
Q ss_pred HHHhhC-CCCcEEEE
Q 037034 84 LVDSYN-KPIPAILE 97 (130)
Q Consensus 84 ~I~~~~-~~~P~Iv~ 97 (130)
.++.+. ...|+|+.
T Consensus 80 ~~~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 80 IVEACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 333332 45787663
No 39
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=40.93 E-value=76 Score=26.32 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=52.4
Q ss_pred ceEEEecCCCcHHHHHH----HHHHHhcCCCeeEEEEe--------hHHH---HHHHHHHHhh-----CCCCcEEEEcCC
Q 037034 41 TNYLIVDSKTTVKAIED----AFKEFTTKEDIAIVLIS--------QYVA---NMIRFLVDSY-----NKPIPAILEIPS 100 (130)
Q Consensus 41 ~n~~v~~~~t~~ee~~~----~~~~l~~~~digII~It--------e~~a---~~i~~~I~~~-----~~~~P~Iv~IPs 100 (130)
.||.-..-..+.+.+.+ +|+-+++++++-.||+. +.+| +-|-..+.++ ....|+||-+-+
T Consensus 302 ANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~G 381 (425)
T 3mwd_A 302 ANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGG 381 (425)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBS
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCc
Confidence 57876655555677766 48877778887777763 5577 5444444443 246899999955
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCccccC
Q 037034 101 KDHPYDPAHDSVLSRVKNLFSAESVASG 128 (130)
Q Consensus 101 ~~g~~~~~~d~i~~~V~~AiGvdi~~~~ 128 (130)
.+. +.++. +.+-.-+-+|+.+...+
T Consensus 382 tn~--~eg~~-il~~~g~~lgip~~~~g 406 (425)
T 3mwd_A 382 PNY--QEGLR-VMGEVGKTTGIPIHVFG 406 (425)
T ss_dssp TTH--HHHHH-HHHHHHHHHTCCEEEEC
T ss_pred CCH--HHHHH-HHHhCCcccCCceEEeC
Confidence 442 23333 44444455677776553
No 40
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.75 E-value=65 Score=24.19 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=58.2
Q ss_pred CCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHH--h--cCCCeeEEEEehHHHHHHHHH
Q 037034 9 TKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEF--T--TKEDIAIVLISQYVANMIRFL 84 (130)
Q Consensus 9 ~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l--~--~~~digII~Ite~~a~~i~~~ 84 (130)
.....+|+|+++.+...=-+-+|++- +.. +++++..+.. . -..+|-+++.|.++...+...
T Consensus 56 ~~k~~kV~Vf~~~~~~~~Ak~aGad~-----------vg~----e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~ 120 (216)
T 3j21_A 56 RGKDVKIAVIADGAVAEAARKLGLDV-----------ISS----AELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRY 120 (216)
T ss_dssp CSSCCCEEECCCSHHHHHHHHHTCCC-----------CCT----THHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHhcCCCc-----------cCH----HHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHH
Confidence 34567999999998888889999972 233 6665544321 0 025799999999999988876
Q ss_pred HHhh---CCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcC
Q 037034 85 VDSY---NKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS 121 (130)
Q Consensus 85 I~~~---~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiG 121 (130)
+-.. +...| .|-. +. . +.+.+.|+++.+
T Consensus 121 LGk~LgprgkmP----~pk~-gt---v-~dv~~~v~~~k~ 151 (216)
T 3j21_A 121 LGRYLGPRNKMP----VVVP-PT---L-TDLTPIVEKLKK 151 (216)
T ss_dssp HHHHHTTSSSSC----CTTT-TC---B-CSHHHHHHHHTC
T ss_pred HHHHhccCCccC----CCcC-Cc---H-HHHHHHHHHHHh
Confidence 6553 23333 2221 22 1 347778887766
No 41
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=40.46 E-value=72 Score=23.00 Aligned_cols=88 Identities=9% Similarity=0.149 Sum_probs=40.0
Q ss_pred CCCCCcEEEEEcch-------hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHH
Q 037034 8 PTKSSALIAMIADE-------DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANM 80 (130)
Q Consensus 8 ~~~~~~kIaVIGD~-------dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~ 80 (130)
.+.++++||++-.. +....-.+.|++..-....-+..+.+.+.+.+...+.++.+..+.==|||++.....+.
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~ 83 (292)
T 3k4h_A 4 ANQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDR 83 (292)
T ss_dssp ---CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCH
T ss_pred ccCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChH
Confidence 34567889998654 11222223333321111111134444443445555666766654444666655433332
Q ss_pred HHHHHHhhCCCCcEEEE
Q 037034 81 IRFLVDSYNKPIPAILE 97 (130)
Q Consensus 81 i~~~I~~~~~~~P~Iv~ 97 (130)
.-+.+.+ ...|+|+.
T Consensus 84 ~~~~l~~--~~iPvV~~ 98 (292)
T 3k4h_A 84 IIQYLHE--QNFPFVLI 98 (292)
T ss_dssp HHHHHHH--TTCCEEEE
T ss_pred HHHHHHH--CCCCEEEE
Confidence 2222322 66887763
No 42
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=39.39 E-value=90 Score=21.37 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=38.5
Q ss_pred cEEEEEcchhhHHHHH------HhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe----------hH
Q 037034 13 ALIAMIADEDTVTGFL------LAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS----------QY 76 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFr------LaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It----------e~ 76 (130)
.+|.+|||+=| .|+. |.+...+ .|.. ....++...+.+.+.+.+...+.-+|+|. +.
T Consensus 21 prVl~iGDSit-~G~~~~l~~~l~~~~~v-----~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 93 (200)
T 4h08_A 21 PHVLLIGNSIT-RGYYGKVEAALKEKAYV-----GRLS-NSKSVGDPALIEELAVVLKNTKFDVIHFNNGLHGFDYTEEE 93 (200)
T ss_dssp CEEEEEESHHH-HHHHHHHHHHTTTTCEE-----EEEE-ESCCTTCHHHHHHHHHHHHHSCCSEEEECCCSSCTTSCHHH
T ss_pred CeEEEEchhHH-hhhHHHHHHHhccCCeE-----EEEe-ccCCccHHHHHHHHHHHHhcCCCCeEEEEeeeCCCCCCHHH
Confidence 48999999855 3552 3332211 1122 22233345666667766655555566662 33
Q ss_pred HHHHHHHHHHhhC
Q 037034 77 VANMIRFLVDSYN 89 (130)
Q Consensus 77 ~a~~i~~~I~~~~ 89 (130)
+.+.++..|+.++
T Consensus 94 ~~~~l~~ii~~l~ 106 (200)
T 4h08_A 94 YDKSFPKLIKIIR 106 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4566777777764
No 43
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=38.51 E-value=1.2e+02 Score=22.51 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=48.1
Q ss_pred cEEEEEcc---------hhhHHHHHHh--------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE--E
Q 037034 13 ALIAMIAD---------EDTVTGFLLA--------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL--I 73 (130)
Q Consensus 13 ~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~--I 73 (130)
-+|+++.. .+...|++++ |+.| ++..+++.|...+++...+.+++|+. +++-.|+ .
T Consensus 3 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G----~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~ 77 (356)
T 3ipc_A 3 VVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGING----EQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHA 77 (356)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTT----BCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECS
T ss_pred EEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCC----eEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCC
Confidence 57888865 2455677764 2322 22335666666677888899999997 5554444 3
Q ss_pred ehHHHHHHHHHHHhhCCCCcEEEE
Q 037034 74 SQYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 74 te~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
+......+.+.+++ ...|+|..
T Consensus 78 ~s~~~~~~~~~~~~--~~ip~v~~ 99 (356)
T 3ipc_A 78 NSGVSIPASEVYAE--NGILEITP 99 (356)
T ss_dssp SHHHHHHHHHHHHT--TTCEEEES
T ss_pred CcHHHHHHHHHHHh--CCCeEEec
Confidence 45555566666665 45787764
No 44
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=37.32 E-value=71 Score=23.15 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=42.8
Q ss_pred CCCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
.+.++++||++-. .+....-.+.|++..-....-++.+.+...+.+...+.++.+..+.==|||+..... ..+.+
T Consensus 4 ~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~ 80 (291)
T 3egc_A 4 RSKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG---EHDYL 80 (291)
T ss_dssp ---CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS---CCHHH
T ss_pred ccCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC---ChHHH
Confidence 4556788998863 222222233344322111111134444433456666777777755545777766544 23344
Q ss_pred HhhC-CCCcEEEE
Q 037034 86 DSYN-KPIPAILE 97 (130)
Q Consensus 86 ~~~~-~~~P~Iv~ 97 (130)
+.+. ...|+|+.
T Consensus 81 ~~~~~~~iPvV~~ 93 (291)
T 3egc_A 81 RTELPKTFPIVAV 93 (291)
T ss_dssp HHSSCTTSCEEEE
T ss_pred HHhhccCCCEEEE
Confidence 5543 67887763
No 45
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=36.99 E-value=1.3e+02 Score=22.41 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=39.6
Q ss_pred CCCcEEEEEcch-hhHHHHHHhcccccccCC-cceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh
Q 037034 10 KSSALIAMIADE-DTVTGFLLAGVGNVDLRR-KTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS 87 (130)
Q Consensus 10 ~~~~kIaVIGD~-dtv~GFrLaGi~~~~~~~-~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~ 87 (130)
.++.+||++-.. +....-.+.|++..-... .-++.+.+.+.+.+...+.++.++.+.==|||+..... +.+.+.++.
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~~~~~~~~ 82 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA-APMTPIVEE 82 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH-HHHHHHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH-HHHHHHHHH
Confidence 456789988532 222222233443211111 11133434333445556778888755434666655332 222233333
Q ss_pred hC-CCCcEEEE
Q 037034 88 YN-KPIPAILE 97 (130)
Q Consensus 88 ~~-~~~P~Iv~ 97 (130)
+. ...|+|+.
T Consensus 83 ~~~~~iPvV~~ 93 (325)
T 2x7x_A 83 AYQKGIPVILV 93 (325)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCeEEEe
Confidence 32 56887763
No 46
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.20 E-value=37 Score=24.76 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=56.0
Q ss_pred CcEEEEEcchhhHHHHH----HhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh
Q 037034 12 SALIAMIADEDTVTGFL----LAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS 87 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~ 87 (130)
..|||++|=+..+.|+. +.|++-. . |.+.+ ++|+++.++++. ++++.+|+=.--..+..+ +
T Consensus 94 ~~kIavvg~~~~~~~~~~~~~ll~~~i~-----~-~~~~~----~~e~~~~i~~l~-~~G~~vvVG~~~~~~~A~----~ 158 (196)
T 2q5c_A 94 GNELALIAYKHSIVDKHEIEAMLGVKIK-----E-FLFSS----EDEITTLISKVK-TENIKIVVSGKTVTDEAI----K 158 (196)
T ss_dssp CSEEEEEEESSCSSCHHHHHHHHTCEEE-----E-EEECS----GGGHHHHHHHHH-HTTCCEEEECHHHHHHHH----H
T ss_pred CCcEEEEeCcchhhHHHHHHHHhCCceE-----E-EEeCC----HHHHHHHHHHHH-HCCCeEEECCHHHHHHHH----H
Confidence 35999999988888875 4666522 1 44444 389999999886 678888765544433332 2
Q ss_pred hCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhc
Q 037034 88 YNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120 (130)
Q Consensus 88 ~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~Ai 120 (130)
...|.++-- .+.++|++-+++|+
T Consensus 159 --~Gl~~vli~--------sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 159 --QGLYGETIN--------SGEESLRRAIEEAL 181 (196)
T ss_dssp --TTCEEEECC--------CCHHHHHHHHHHHH
T ss_pred --cCCcEEEEe--------cCHHHHHHHHHHHH
Confidence 336666532 13688888888875
No 47
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.51 E-value=59 Score=23.46 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=40.2
Q ss_pred CCCCCcEEEEEcc--h--hhHHHHHHhcccccccCCcceEEEecC--CCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHH
Q 037034 8 PTKSSALIAMIAD--E--DTVTGFLLAGVGNVDLRRKTNYLIVDS--KTTVKAIEDAFKEFTTKEDIAIVLISQYVANMI 81 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~--dtv~GFrLaGi~~~~~~~~~n~~v~~~--~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i 81 (130)
|+.++++||++-. . +....-.+.|++..-....-+..+.+. +.+.++..+.++.++.+.==|||+..... +.+
T Consensus 1 ~~~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~~ 79 (289)
T 3brs_A 1 MSLKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY-EKT 79 (289)
T ss_dssp ----CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT-TTT
T ss_pred CCCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HHh
Confidence 3455688999854 1 222222333433211000011233332 23445666778888765434666655332 223
Q ss_pred HHHHHhhC-CCCcEEEE
Q 037034 82 RFLVDSYN-KPIPAILE 97 (130)
Q Consensus 82 ~~~I~~~~-~~~P~Iv~ 97 (130)
.+.++.+. ...|+|+.
T Consensus 80 ~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 80 YDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp HHHHTTTGGGTCEEEEE
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 34455443 56787663
No 48
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=34.46 E-value=1.3e+02 Score=21.61 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHH
Q 037034 9 TKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVD 86 (130)
Q Consensus 9 ~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~ 86 (130)
+.+++.||++-. .+....-.+.|++..-....-+..+.+.+.+.+.-.+.++.+..+.==|||+..... + +.++
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~---~~~~ 79 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-P---QTVQ 79 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-H---HHHH
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-H---HHHH
Confidence 456688998864 222333334444322111111234444433445556778877755445777776554 2 3334
Q ss_pred hh-CCCCcEEEE
Q 037034 87 SY-NKPIPAILE 97 (130)
Q Consensus 87 ~~-~~~~P~Iv~ 97 (130)
.+ +...|+|+.
T Consensus 80 ~l~~~~iPvV~i 91 (276)
T 3jy6_A 80 EILHQQMPVVSV 91 (276)
T ss_dssp HHHTTSSCEEEE
T ss_pred HHHHCCCCEEEE
Confidence 43 267897764
No 49
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=34.30 E-value=1.2e+02 Score=23.30 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=43.9
Q ss_pred CCCCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHH-HHHhcCCCeeEEEEehHHHHHHHH
Q 037034 7 IPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAF-KEFTTKEDIAIVLISQYVANMIRF 83 (130)
Q Consensus 7 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~-~~l~~~~digII~Ite~~a~~i~~ 83 (130)
-......+|+|++|.+.+.==+-+|.+ |+- . +|+.+.+ ++. ..+|-.++-|+++...+..
T Consensus 70 h~~gk~~kV~Vfa~~~~~~eAk~aGad---------~vg-~-----~dLi~ki~k~g--~~~fD~~iAtpd~m~~l~~ 130 (242)
T 3qoy_A 70 HGLGKPIKVVVFAEGEYAKKAEEAGAD---------YVG-G-----DELINKILKEE--WTDFDVAIATPEMMPKVAK 130 (242)
T ss_dssp CCCSSCCCEEEECCHHHHHHHHHTTCS---------EEE-S-----HHHHHHHHHHT--CCCCSEEEECTTTHHHHGG
T ss_pred CCCCCCcEEEEEcCHHHHHHHHHcCCC---------EEC-c-----HHHHHHHHhCC--CccCCEEEECHHHHHHHHH
Confidence 334556899999999888888999997 322 2 5555545 544 4689999999998887765
No 50
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=34.27 E-value=90 Score=24.19 Aligned_cols=57 Identities=9% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCCCCcEEEEEcch--hhH------HHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 037034 8 PTKSSALIAMIADE--DTV------TGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--dtv------~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It 74 (130)
|+.++++.+|||++ .+. ..|+..|++.. |...+- +++++.++++.+.. .++.=+-||
T Consensus 1 ~s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~-------Y~~~~v--~~~~l~~~v~~l~~-~~~~G~nVT 65 (282)
T 3fbt_A 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGI-------YNLFEV--PKEKLKESVDTFKI-IKCGGLNVT 65 (282)
T ss_dssp --CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEE-------EEEEEC--CGGGHHHHHHHHHH-TTCCEEEEC
T ss_pred CCCcceEEEEECCCccccchHHHHHHHHHHcCCCcE-------EEEEEC--CHHHHHHHHHHHhc-CCCCEEEEc
Confidence 34456899999994 222 57888999865 755442 34888888887653 455445555
No 51
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.21 E-value=1.3e+02 Score=21.61 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
.+.++++||++-. .+....=.+.|++..-....-++.+.+.+.+.+...+.++.++++.==|||+..... +.+.+.+
T Consensus 4 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~~~~~ 82 (293)
T 3l6u_A 4 TSPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD-VYIGSAI 82 (293)
T ss_dssp -----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT-TTTHHHH
T ss_pred CCCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-HHHHHHH
Confidence 3456688999864 222222223333321111111134444444556667788888865544666654332 2222333
Q ss_pred HhhC-CCCcEEEE
Q 037034 86 DSYN-KPIPAILE 97 (130)
Q Consensus 86 ~~~~-~~~P~Iv~ 97 (130)
+.+. ...|+|+.
T Consensus 83 ~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 83 EEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHcCCCEEEe
Confidence 3332 56887764
No 52
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=34.17 E-value=1.3e+02 Score=21.79 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=46.6
Q ss_pred cEEEEEc--ch-------hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCe-eEEEEeh-HHHHHH
Q 037034 13 ALIAMIA--DE-------DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDI-AIVLISQ-YVANMI 81 (130)
Q Consensus 13 ~kIaVIG--D~-------dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~di-gII~Ite-~~a~~i 81 (130)
..|.+++ +. +.+--+.-+|++++ .+.+ .+.++.+..++.+ ++.+. -++.++. ...+.+
T Consensus 81 ~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v--------~~~~--~~~~~~~~~~~~~-~~~g~~~~~~i~~~t~~e~~ 149 (248)
T 1geq_A 81 TPIVLMTYYNPIYRAGVRNFLAEAKASGVDGI--------LVVD--LPVFHAKEFTEIA-REEGIKTVFLAAPNTPDERL 149 (248)
T ss_dssp CCEEEEECHHHHHHHCHHHHHHHHHHHTCCEE--------EETT--CCGGGHHHHHHHH-HHHTCEEEEEECTTCCHHHH
T ss_pred CCEEEEeccchhhhcCHHHHHHHHHHCCCCEE--------EECC--CChhhHHHHHHHH-HHhCCCeEEEECCCCHHHHH
Confidence 4566666 43 67777888999864 2322 2334444444322 22222 2334443 233444
Q ss_pred HHHHHhhCCCCcEEEEcCCCCCC---CChhhhHHHHHHHHhcCCCccccC
Q 037034 82 RFLVDSYNKPIPAILEIPSKDHP---YDPAHDSVLSRVKNLFSAESVASG 128 (130)
Q Consensus 82 ~~~I~~~~~~~P~Iv~IPs~~g~---~~~~~d~i~~~V~~AiGvdi~~~~ 128 (130)
+...+.. ...=.++.+|+..|. ..+..-...+.+++.+++.+.++|
T Consensus 150 ~~~~~~~-d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~G 198 (248)
T 1geq_A 150 KVIDDMT-TGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGF 198 (248)
T ss_dssp HHHHHHC-SSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHhcC-CCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEe
Confidence 4433321 111123444543332 112112244566677777777665
No 53
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.94 E-value=91 Score=19.78 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=36.4
Q ss_pred CCCCcEEEEEcchhhHHHHH---H--hcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHH----
Q 037034 9 TKSSALIAMIADEDTVTGFL---L--AGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVAN---- 79 (130)
Q Consensus 9 ~~~~~kIaVIGD~dtv~GFr---L--aGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~---- 79 (130)
+.+..+|.++.|.....-.. | .|.. +.+... .+..++++.+ .+..+.+|++.-.+.+
T Consensus 2 ~~~~~~ILivdd~~~~~~~l~~~L~~~~~~---------~~v~~~----~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~ 67 (144)
T 3kht_A 2 SLRSKRVLVVEDNPDDIALIRRVLDRKDIH---------CQLEFV----DNGAKALYQV-QQAKYDLIILDIGLPIANGF 67 (144)
T ss_dssp ---CEEEEEECCCHHHHHHHHHHHHHTTCC---------EEEEEE----SSHHHHHHHH-TTCCCSEEEECTTCGGGCHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---------eeEEEE----CCHHHHHHHh-hcCCCCEEEEeCCCCCCCHH
Confidence 33458899999855433221 2 2332 122222 2233444433 4567889999865432
Q ss_pred HHHHHHHh--hCCCCcEEEEcC
Q 037034 80 MIRFLVDS--YNKPIPAILEIP 99 (130)
Q Consensus 80 ~i~~~I~~--~~~~~P~Iv~IP 99 (130)
.+-..+.+ .....|+|+.-.
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHHhcccccCCCEEEEeC
Confidence 12222332 124567666543
No 54
>3b48_A Uncharacterized protein; enterococcus faecalis V583, structural genomics, PSI-2, PROT structure initiative; 2.21A {Enterococcus faecalis} SCOP: c.54.1.2
Probab=33.70 E-value=1.1e+02 Score=20.82 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=32.4
Q ss_pred eeEEEEeh--HHHHHHHHHHHhh-CCCCcEEEEcCCCC-CCCChhhhHHHHHHHHh
Q 037034 68 IAIVLISQ--YVANMIRFLVDSY-NKPIPAILEIPSKD-HPYDPAHDSVLSRVKNL 119 (130)
Q Consensus 68 igII~Ite--~~a~~i~~~I~~~-~~~~P~Iv~IPs~~-g~~~~~~d~i~~~V~~A 119 (130)
+|||++|- .+++.+.+.++.. ....+-+..+.... ++.+.-.+.+.+.+++.
T Consensus 6 igIvivsHg~~lA~gl~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~i~~ai~~~ 61 (135)
T 3b48_A 6 ADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEA 61 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTC--CCCEEEECCSCSSSSSSCCHHHHHHHHHHS
T ss_pred ccEEEEECCHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 79999996 6999999999987 32233566555432 33332345566666553
No 55
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=33.63 E-value=1.2e+02 Score=22.04 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCCcEEEEEcc----hhh---HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHH
Q 037034 9 TKSSALIAMIAD----EDT---VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMI 81 (130)
Q Consensus 9 ~~~~~kIaVIGD----~dt---v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i 81 (130)
+.+++.||++-. ++. ...=.+.|++..-....-+..+.+.+.+.+.-.+.++.+..+.==|||+......+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 83 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPI 83 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHH
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChHH
Confidence 456688999962 122 2222344554322111111334343333344455666666544347777654332222
Q ss_pred HHHHHhhCCCCcEEEE
Q 037034 82 RFLVDSYNKPIPAILE 97 (130)
Q Consensus 82 ~~~I~~~~~~~P~Iv~ 97 (130)
-+.+.+ ...|+|+.
T Consensus 84 ~~~l~~--~~iPvV~i 97 (295)
T 3hcw_A 84 KQMLID--ESMPFIVI 97 (295)
T ss_dssp HHHHHH--TTCCEEEE
T ss_pred HHHHHh--CCCCEEEE
Confidence 223332 56887763
No 56
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=32.68 E-value=71 Score=25.26 Aligned_cols=53 Identities=8% Similarity=0.247 Sum_probs=36.9
Q ss_pred EEEEcc-hhhH-------HHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 037034 15 IAMIAD-EDTV-------TGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 15 IaVIGD-~dtv-------~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It 74 (130)
+..+|| +++. --+.-.|++.. +..-..+++++|+.+.+++|=+++++-=|++.
T Consensus 39 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 99 (285)
T 3l07_A 39 AIIVGNDPASKTYVASKEKACAQVGIDSQ-------VITLPEHTTESELLELIDQLNNDSSVHAILVQ 99 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEE-------EEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCcEEEEc
Confidence 455676 4433 34566899754 45556678899999999999888888555555
No 57
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=32.48 E-value=94 Score=25.91 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=34.9
Q ss_pred CcEEEEEcchhhHHH-------------------HHHh-cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEE
Q 037034 12 SALIAMIADEDTVTG-------------------FLLA-GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIV 71 (130)
Q Consensus 12 ~~kIaVIGD~dtv~G-------------------FrLa-Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII 71 (130)
..+++||.|...++| |+.. |++.. |.+.+- .+++++.++++.+. ++++-+
T Consensus 63 ~~~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid~~-------yi~ldv-~d~de~~~~v~~l~--~~f~Gi 132 (439)
T 2dvm_A 63 GNLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAF-------PIMIKE-QEPNKFIDIVKAIA--PTFGGI 132 (439)
T ss_dssp GGEEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCEEE-------EEECSC-CSHHHHHHHHHHTG--GGCSEE
T ss_pred CcEEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCCCe-------eeeeec-CCHHHHHHHHHHhC--ccCcEE
Confidence 356777776665555 6666 78754 666653 24689999998774 676666
Q ss_pred EE
Q 037034 72 LI 73 (130)
Q Consensus 72 ~I 73 (130)
=+
T Consensus 133 nv 134 (439)
T 2dvm_A 133 NL 134 (439)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 58
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=31.94 E-value=1.8e+02 Score=22.65 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=46.0
Q ss_pred cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEeh-HHHHHHHHHHHhhCCC
Q 037034 13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQ-YVANMIRFLVDSYNKP 91 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite-~~a~~i~~~I~~~~~~ 91 (130)
-.+-++||++.+. ++-.++ |.++++.++++.++.+.. ++++.+.-.++=-- ...+.++..+......
T Consensus 44 ~~~ILvG~~~~I~---~~~~~~--------~eIid~~~~~~aar~a~~-mV~~G~ADa~vsG~~~t~~~lr~~l~~~~G~ 111 (291)
T 3uf6_A 44 GKFLLFGKKEDKT---LTANES--------VTWIQTDTAEAAAQGAIL-AVKNKEADILVKGFIPTATLMHHVLKKENGL 111 (291)
T ss_dssp CEEEEEESSCCHH---HHTSTT--------EEEEECCSHHHHHHHHHH-HHHTTSCSEEEECSSCHHHHHHHHTCGGGSC
T ss_pred ceEEEEcCHHHHh---hhccCC--------CEEECCCChHHHHHHHHH-HHHCCCCCEEEECCCChHHHHHHHhccccCC
Confidence 4566788888772 322332 567777766666666665 55565543333222 4466777766543333
Q ss_pred Cc-------EEEEcCCCCCC
Q 037034 92 IP-------AILEIPSKDHP 104 (130)
Q Consensus 92 ~P-------~Iv~IPs~~g~ 104 (130)
.| .++.+|+.++.
T Consensus 112 r~~~~vs~~~~~~~p~~~~~ 131 (291)
T 3uf6_A 112 RTDQLLSQIAIFDIPTYHKP 131 (291)
T ss_dssp CCSSCCEEEEEEECTTSSSC
T ss_pred CCCceeeEEEEEEEcCCCCc
Confidence 33 45788975554
No 59
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=31.76 E-value=69 Score=25.31 Aligned_cols=54 Identities=7% Similarity=0.223 Sum_probs=37.9
Q ss_pred EEEEcc-hhh-------HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEeh
Q 037034 15 IAMIAD-EDT-------VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQ 75 (130)
Q Consensus 15 IaVIGD-~dt-------v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite 75 (130)
+..+|| +++ .--+.-.|++.. +..-..+++++|+.+.+++|=+++++-=|++.-
T Consensus 38 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 99 (285)
T 3p2o_A 38 VILVGDNPASQTYVKSKAKACEECGIKSL-------VYHLNENITQNELLALINTLNHDDSVHGILVQL 99 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEE-------EEEECTTCCHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCCEEEecC
Confidence 555676 444 234566899854 455566788999999999998888885556553
No 60
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=31.61 E-value=73 Score=20.06 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcC--CCeeEEEEehHHHHHHHHHHHhhC-CCCcEEEEcCCCCC----CCChhhhHHHHHHHHhcC
Q 037034 53 KAIEDAFKEFTTK--EDIAIVLISQYVANMIRFLVDSYN-KPIPAILEIPSKDH----PYDPAHDSVLSRVKNLFS 121 (130)
Q Consensus 53 ee~~~~~~~l~~~--~digII~Ite~~a~~i~~~I~~~~-~~~P~Iv~IPs~~g----~~~~~~d~i~~~V~~AiG 121 (130)
..+...|+++.+. +++.++.++-+-. .+...+|. ...|+++.+++..- ......+.+.+.+++++|
T Consensus 47 ~~~~~~l~~~~~~~~~~v~~~~vd~d~~---~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 119 (119)
T 1w4v_A 47 KILGPRLEKMVAKQHGKVVMAKVDIDDH---TDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 119 (119)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEEEETTTT---HHHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCC---HHHHHHcCCCcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence 3445555555432 3577777764322 23344565 77998888754220 011135778999988875
No 61
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=31.10 E-value=1.4e+02 Score=22.28 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=52.5
Q ss_pred CCcEEEEEcc---------hhhHHHHHHhcccccc--cCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE--EehHH
Q 037034 11 SSALIAMIAD---------EDTVTGFLLAGVGNVD--LRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL--ISQYV 77 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLaGi~~~~--~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~--Ite~~ 77 (130)
...+|+++.. .+...|++++ ++.+| .+++..+++.|...+++...+.+++|+.++.+-.|+ .+...
T Consensus 15 ~~~~iG~~~plsG~~a~~g~~~~~g~~~a-~~~in~i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~~ 93 (366)
T 3td9_A 15 KVVKIAVILPMTGGISAFGRMVWEGIQIA-HEEKPTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAH 93 (366)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHH-HHHCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHH
T ss_pred ceEEEEEEECCcCcchhcCHHHHHHHHHH-HHHhhhcCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCchh
Confidence 3468888876 3455666664 11111 011223566666667788889999999776554444 45566
Q ss_pred HHHHHHHHHhhCCCCcEEEEcC
Q 037034 78 ANMIRFLVDSYNKPIPAILEIP 99 (130)
Q Consensus 78 a~~i~~~I~~~~~~~P~Iv~IP 99 (130)
...+.+.+++ ...|+|..-.
T Consensus 94 ~~~~~~~~~~--~~iP~i~~~~ 113 (366)
T 3td9_A 94 SLAIAPIAEE--NKVPMVTPAS 113 (366)
T ss_dssp HHHHHHHHHH--TTCCEEESSC
T ss_pred HHHHHHHHHh--CCCeEEecCC
Confidence 6667677766 4578887543
No 62
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=30.13 E-value=93 Score=23.20 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHhcCCCeeEEEEehH-------HHHHHHHHHHhhCC--CCcEEEEcCC
Q 037034 51 TVKAIEDAFKEFTTKEDIAIVLISQY-------VANMIRFLVDSYNK--PIPAILEIPS 100 (130)
Q Consensus 51 ~~ee~~~~~~~l~~~~digII~Ite~-------~a~~i~~~I~~~~~--~~P~Iv~IPs 100 (130)
+.+++.++|+++.+++++..|+++-+ ..+.+.+.+..++. ..|+|..+-+
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v~g 88 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGS 88 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 35899999999998999988888732 34567777777653 7898877643
No 63
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=29.88 E-value=1.4e+02 Score=23.53 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=37.7
Q ss_pred CCCCcEEEEEcchh--hH------HHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 037034 9 TKSSALIAMIADED--TV------TGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 9 ~~~~~kIaVIGD~d--tv------~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It 74 (130)
+...++.+|||++= +. ..|+..|++.+ |...+ .+++++.++++.+. ..++.=+-||
T Consensus 34 ~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~-------Y~~~~--v~~~~l~~~~~~l~-~~~~~G~nVT 97 (315)
T 3tnl_A 34 TGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYV-------YLAFE--VGDKELKDVVQGFR-AMNLRGWNVS 97 (315)
T ss_dssp CTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEE-------EEEEE--CCHHHHHHHHHHHH-HTTCCEEEEC
T ss_pred CCcccEEEEECCCccccccHHHHHHHHHHcCCCcE-------EEEEe--cCHHHHHHHHHHHh-cCCCCEEEEc
Confidence 44567899999953 22 48999999865 75543 24588888888664 3455444555
No 64
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.60 E-value=1.6e+02 Score=22.21 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=40.6
Q ss_pred CCCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
++.+++.||++-. .+....-.+.|++..-....-+..+.+.+.+.+.-.+.++.++.+.==|||+......+..-+.+
T Consensus 66 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l 145 (355)
T 3e3m_A 66 TTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLL 145 (355)
T ss_dssp -----CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHH
T ss_pred hcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 3455678998853 22222233444442211111112333333344555677887876555577777544333222223
Q ss_pred HhhCCCCcEEEE
Q 037034 86 DSYNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
.+ ...|+|+.
T Consensus 146 ~~--~~iPvV~i 155 (355)
T 3e3m_A 146 QR--ASIPIVEI 155 (355)
T ss_dssp HH--CCSCEEEE
T ss_pred Hh--CCCCEEEE
Confidence 32 66898764
No 65
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=29.56 E-value=1.5e+02 Score=21.13 Aligned_cols=88 Identities=8% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHH
Q 037034 9 TKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVD 86 (130)
Q Consensus 9 ~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~ 86 (130)
+.++++||++-. .+....-.+.|++..-....-+..+.+.+.+.+...+.++.++.+.==|||+......+.+.+.+.
T Consensus 4 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~ 83 (289)
T 1dbq_A 4 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE 83 (289)
T ss_dssp ----CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHH
Confidence 345678999863 222222223333211000000123333333456666778888754434677765432222333343
Q ss_pred hhCCCCcEEEE
Q 037034 87 SYNKPIPAILE 97 (130)
Q Consensus 87 ~~~~~~P~Iv~ 97 (130)
+ ....|+|+.
T Consensus 84 ~-~~~iPvV~~ 93 (289)
T 1dbq_A 84 E-YRHIPMVVM 93 (289)
T ss_dssp H-TTTSCEEEE
T ss_pred h-ccCCCEEEE
Confidence 2 145787763
No 66
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.46 E-value=1.8e+02 Score=21.75 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
.+.+++.||++=. .+....-.+.|++..-....-+..+.+.+.+.+.-.+.++.++.+.==|||+......+..-+.+
T Consensus 64 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l 143 (344)
T 3kjx_A 64 ASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAML 143 (344)
T ss_dssp TTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHH
T ss_pred hcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHH
Confidence 3455678998843 12222223444442211111112333333345666677888876554577777544333222233
Q ss_pred HhhCCCCcEEEE
Q 037034 86 DSYNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
.+ ...|+|+.
T Consensus 144 ~~--~~iPvV~i 153 (344)
T 3kjx_A 144 DA--AGIPVVEI 153 (344)
T ss_dssp HH--CSSCEEEE
T ss_pred Hh--CCCCEEEE
Confidence 32 66897764
No 67
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=29.22 E-value=45 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=28.4
Q ss_pred CCcE-EEEEcchhhH------HHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHH
Q 037034 11 SSAL-IAMIADEDTV------TGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEF 62 (130)
Q Consensus 11 ~~~k-IaVIGD~dtv------~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l 62 (130)
.++. ++|||++.+. ..|+..|++.. |...++ +++.++++.+
T Consensus 5 ~t~~~~~viG~PhS~SP~~hn~~~~~~gl~~~-------Y~~~~~----~~l~~~~~~~ 52 (271)
T 1npy_A 5 DTQLCMSLSGRPSNFGTTFHNYLYDKLGLNFI-------YKAFTT----QDIEHAIKGV 52 (271)
T ss_dssp TCEEEEEECSSCCSHHHHHHHHHHHHHTCCEE-------EEEECC----SCHHHHHHHH
T ss_pred CceEEEEEECCCCcccHHHHHHHHHHcCCCcE-------EEeech----hhHHHHHHHh
Confidence 3345 7999999663 57999999865 876664 5555555544
No 68
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=29.18 E-value=35 Score=23.64 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCeeEEEEehHHHH--HHHHHHHhh
Q 037034 53 KAIEDAFKEFTTKEDIAIVLISQYVAN--MIRFLVDSY 88 (130)
Q Consensus 53 ee~~~~~~~l~~~~digII~Ite~~a~--~i~~~I~~~ 88 (130)
+++...+.+.+.+.++.|+++|+++++ ++.+++...
T Consensus 61 ~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~ 98 (154)
T 3h16_A 61 DSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL 98 (154)
T ss_dssp CCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHH
T ss_pred cHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHH
Confidence 456667777888889999999999874 566666553
No 69
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=29.15 E-value=1.9e+02 Score=21.94 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHhcCCCeeEEEEehHH---HHHHHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHh
Q 037034 59 FKEFTTKEDIAIVLISQYV---ANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNL 119 (130)
Q Consensus 59 ~~~l~~~~digII~Ite~~---a~~i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~A 119 (130)
++++++++++-+++|+-.- ++.+...++ ...++++|=|.-... .+-+.|.+..++.
T Consensus 58 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGkhVl~EKP~a~~~--~e~~~l~~~a~~~ 116 (336)
T 2p2s_A 58 AEQLITDASIDLIACAVIPCDRAELALRTLD---AGKDFFTAKPPLTTL--EQLDAVQRRVAET 116 (336)
T ss_dssp HHHHHTCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEEECSSCCSCH--HHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEeCChhhHHHHHHHHHH---CCCcEEEeCCCCCCH--HHHHHHHHHHHHc
Confidence 5678877778777777432 334443343 567888887754322 1234455555543
No 70
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=29.02 E-value=30 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.481 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCC-eeEEEEeh
Q 037034 52 VKAIEDAFKEFTTKED-IAIVLISQ 75 (130)
Q Consensus 52 ~ee~~~~~~~l~~~~d-igII~Ite 75 (130)
..|++++|+++.+.++ .|+|+++.
T Consensus 11 ~~evEe~l~RI~~~kgV~G~iIln~ 35 (106)
T 2hz5_A 11 MAEVEETLKRLQSQKGVQGIIVVNT 35 (106)
T ss_dssp ----CHHHHHHHTSTTEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcC
Confidence 3789999999987665 78888875
No 71
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=28.80 E-value=1.2e+02 Score=22.18 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=39.9
Q ss_pred CCCCCcEEEEEcch-------hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHH
Q 037034 8 PTKSSALIAMIADE-------DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANM 80 (130)
Q Consensus 8 ~~~~~~kIaVIGD~-------dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~ 80 (130)
++.+++.||++-.. +....-.+.|++..-....-+..+.+.+.+.+.-.+.++.+..+.==|||+......+.
T Consensus 18 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 97 (305)
T 3huu_A 18 ITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDP 97 (305)
T ss_dssp ---CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCH
T ss_pred hhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCcH
Confidence 45567889988543 12222234454422111111133434333344445666766654444777765433222
Q ss_pred HHHHHHhhCCCCcEEEE
Q 037034 81 IRFLVDSYNKPIPAILE 97 (130)
Q Consensus 81 i~~~I~~~~~~~P~Iv~ 97 (130)
.-+.+.+ ...|+|+.
T Consensus 98 ~~~~l~~--~~iPvV~i 112 (305)
T 3huu_A 98 IEHLLNE--FKVPYLIV 112 (305)
T ss_dssp HHHHHHH--TTCCEEEE
T ss_pred HHHHHHH--cCCCEEEE
Confidence 2222222 66887763
No 72
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=28.70 E-value=1.4e+02 Score=20.41 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=30.9
Q ss_pred eeEEEEeh--HHHHHHHHHHHhhCCCCcEEEEcCCC-CCCCChhhhHHHHHHHHh
Q 037034 68 IAIVLISQ--YVANMIRFLVDSYNKPIPAILEIPSK-DHPYDPAHDSVLSRVKNL 119 (130)
Q Consensus 68 igII~Ite--~~a~~i~~~I~~~~~~~P~Iv~IPs~-~g~~~~~~d~i~~~V~~A 119 (130)
+|||++|= .+++.+.+.++..-...+ +..+... .++.+.-.+.+.+.+++.
T Consensus 3 igIvivSHg~~lA~gl~~~~~~i~g~~~-i~~~~~~~~~~~~~~~~~i~~ai~~~ 56 (131)
T 3ct6_A 3 YGIVIVSHSPEIASGLKKLIREVAKNIS-LTAIGGLENGEIGTSFDRVMNAIEEN 56 (131)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTTCSSSC-EEEEESCTTSCSSCCHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhcCccC-EEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 78888885 788999998888643333 3333322 233333355666666654
No 73
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=28.49 E-value=1.5e+02 Score=22.49 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh
Q 037034 9 TKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS 87 (130)
Q Consensus 9 ~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~ 87 (130)
...+.+|+|+++.+..-==+-+|++ | + .. +|+.+.|++-. .+|-+++-|.++...+.. |-.
T Consensus 69 ~~k~~rV~Vfa~~~~~~~Ak~aGad---------~-v-g~----edLi~kik~~~--~~fD~~iAtp~~m~~l~~-LGk 129 (234)
T 2wwq_5 69 TGRSVRVAVFTQGANAEAAKAAGAE---------L-V-GM----EDLADQIKKGE--MNFDVVIASPDAMRVVGQ-LGQ 129 (234)
T ss_dssp CSSCCCEEEECSSSCHHHHHHHTCS---------E-E-CS----HHHHHHHHHTC--CCSSEEEECHHHHHHTTS-SCS
T ss_pred CCCCcEEEEEcCchhHHHHHHcCCC---------E-E-cH----HHHHHHHHcCc--ccCCEEEECHHHHHHHHH-Hhh
Confidence 3456899999997666666778986 2 2 33 77766666543 689999999999888765 443
No 74
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=27.26 E-value=2.4e+02 Score=22.58 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHHhcCCCeeEEEEehHH---HHHHHHHHHhh---CCCCcEEEEcCCCC
Q 037034 59 FKEFTTKEDIAIVLISQYV---ANMIRFLVDSY---NKPIPAILEIPSKD 102 (130)
Q Consensus 59 ~~~l~~~~digII~Ite~~---a~~i~~~I~~~---~~~~P~Iv~IPs~~ 102 (130)
++++++++++-+++|+-.- ++.+...++.= -+..++++|=|--.
T Consensus 81 ~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~ 130 (438)
T 3btv_A 81 LESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALAC 130 (438)
T ss_dssp HHHHHHCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCS
T ss_pred HHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccC
Confidence 4567777777777776432 34444444431 01168899877543
No 75
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=27.02 E-value=29 Score=26.67 Aligned_cols=38 Identities=5% Similarity=0.007 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh
Q 037034 49 KTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS 87 (130)
Q Consensus 49 ~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~ 87 (130)
+-+..++.+..+ ++++.++..||.......++-+.|.+
T Consensus 206 eps~~~l~~l~~-~ik~~~v~~if~e~~~~~~~~~~ia~ 243 (284)
T 2prs_A 206 QPGAQRLHEIRT-QLVEQKATCVFAEPQFRPAVVESVAR 243 (284)
T ss_dssp CCCHHHHHHHHH-HHHHTTCCEEEECTTSCSHHHHHHTT
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEeCCCChHHHHHHHH
Confidence 335677777555 55788999999987766666666653
No 76
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.78 E-value=56 Score=23.84 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=26.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC-CCCcEEEE
Q 037034 47 DSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN-KPIPAILE 97 (130)
Q Consensus 47 ~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~-~~~P~Iv~ 97 (130)
+.+.+.++-.+.++.++++.==|||+..-.. ....+.++.+. ...|+|+.
T Consensus 42 ~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 42 AAQYDIQEQITVLEQAIAKNPAGIAISAIDP-VELTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp CSSSCHHHHHHHHHHHHHHCCSEEEECCSST-TTTHHHHHHHHHTTCCEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH-HHHHHHHHHHHHCCCcEEEE
Confidence 3344556667778888754433666654321 12223333332 56887763
No 77
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=26.27 E-value=1.5e+02 Score=24.88 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCcEEEEEcchhhHHH---H-HHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCe---eEEEEehH
Q 037034 11 SSALIAMIADEDTVTG---F-LLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDI---AIVLISQY 76 (130)
Q Consensus 11 ~~~kIaVIGD~dtv~G---F-rLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~di---gII~Ite~ 76 (130)
..++++|.||.+.+.| | +=.|++-+ +++... ..++.++.++++++...+ ..|+.+.+
T Consensus 359 ~Gkrv~i~gd~~~~~~la~~L~ElGm~vv-------~v~~~~--~~~~~~~~~~~ll~~~~~~~~~~v~~~~d 422 (519)
T 1qgu_B 359 HGKKFGLYGDPDFVMGLTRFLLELGCEPT-------VILSHN--ANKRWQKAMNKMLDASPYGRDSEVFINCD 422 (519)
T ss_dssp TTCEEEEESCHHHHHHHHHHHHHTTCEEE-------EEEETT--CCHHHHHHHHHHHHHSTTCTTCEEEESCC
T ss_pred CCCEEEEECCchHHHHHHHHHHHCCCEEE-------EEEeCC--CCHHHHHHHHHHHHhcCCCCCCEEEECCC
Confidence 3589999999999988 3 34576532 233222 236667778877754322 24555434
No 78
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=26.10 E-value=1.2e+02 Score=18.83 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCcEEEEEcchhhHHHH-----HHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHH
Q 037034 11 SSALIAMIADEDTVTGF-----LLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYV 77 (130)
Q Consensus 11 ~~~kIaVIGD~dtv~GF-----rLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~ 77 (130)
...+|.++.|.....-. .-.|++ ..... +.+++ +..+.....+.+|++.-.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~---------v~~~~---~~~~a---~~~~~~~~~~dlvi~D~~l 62 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGID---------AVGAD---GAEEA---RLYLHYQKRIGLMITDLRM 62 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCC---------EEEES---SHHHH---HHHHHHCTTEEEEEECSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCce---------EEEeC---CHHHH---HHHHHhCCCCcEEEEeccC
Confidence 34789999985443322 122443 11211 12443 4434444558999998554
No 79
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.93 E-value=1.9e+02 Score=20.92 Aligned_cols=87 Identities=16% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCCCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
.+.+++.||++-. .+....-.+.|++..-....-...+.+.+.+.+...+.++.+..+.==|||+......+. .+
T Consensus 12 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~ 88 (289)
T 2fep_A 12 SSKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDE---HV 88 (289)
T ss_dssp ----CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHH---HH
T ss_pred ccCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCHH---HH
Confidence 3456688998853 222222233444321110101123333333445556677877755434777765332221 22
Q ss_pred Hhh-CCCCcEEEE
Q 037034 86 DSY-NKPIPAILE 97 (130)
Q Consensus 86 ~~~-~~~~P~Iv~ 97 (130)
+.+ ....|+|+.
T Consensus 89 ~~l~~~~iPvV~~ 101 (289)
T 2fep_A 89 AEFKRSPVPIVLA 101 (289)
T ss_dssp HHHHHSSSCEEEE
T ss_pred HHHHhcCCCEEEE
Confidence 222 256887763
No 80
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.88 E-value=20 Score=22.17 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCCe
Q 037034 53 KAIEDAFKEFTTKEDI 68 (130)
Q Consensus 53 ee~~~~~~~l~~~~di 68 (130)
+|++++|.+||++.+|
T Consensus 3 eEae~aF~~lL~~~~V 18 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV 18 (59)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCC
Confidence 7899999999987764
No 81
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=25.55 E-value=2.2e+02 Score=21.51 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCCcEEEEEcch---------hhHHHHHHhccccccc-----CCcceEEEecCCCcHHHHHHHHHHHhcCCCe-eEEEE-
Q 037034 10 KSSALIAMIADE---------DTVTGFLLAGVGNVDL-----RRKTNYLIVDSKTTVKAIEDAFKEFTTKEDI-AIVLI- 73 (130)
Q Consensus 10 ~~~~kIaVIGD~---------dtv~GFrLaGi~~~~~-----~~~~n~~v~~~~t~~ee~~~~~~~l~~~~di-gII~I- 73 (130)
.+..+|+++... +...|+.++ ++.+|. +.+..+++.|...+++...+.+++|+.++.+ |||..
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a-~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLA-VEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHH-HHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHH-HHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 345789998753 234565553 111111 1112245556555567778889999864554 55443
Q ss_pred ehHHHHHHHHHHHhhCCCCcEEEE
Q 037034 74 SQYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 74 te~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
+......+.+.+.+ ...|+|..
T Consensus 84 ~s~~~~~~~~~~~~--~~iP~v~~ 105 (385)
T 1pea_A 84 MSHTRKAVMPVVER--ADALLCYP 105 (385)
T ss_dssp SHHHHHHHHHHHHH--TTCEEEEC
T ss_pred chHHHHHHHHHHHh--cCceEEEC
Confidence 33344455555554 44787764
No 82
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=25.47 E-value=1.4e+02 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcC-CCeeEEEEe-----hHHHHHHHHHHHhh
Q 037034 53 KAIEDAFKEFTTK-EDIAIVLIS-----QYVANMIRFLVDSY 88 (130)
Q Consensus 53 ee~~~~~~~l~~~-~digII~It-----e~~a~~i~~~I~~~ 88 (130)
+.+.++.+.++.. +++..+=+. +.+.+++++.++++
T Consensus 16 ~gl~~~~~~i~G~~~~v~av~~~~~~~~~~~~~~i~~~i~~~ 57 (144)
T 3lfh_A 16 KGLLSGAEVIIGKQENVHTVGLNLGDNIEVVRKEVEKIIKEK 57 (144)
T ss_dssp HHHHHHHHHHHCCCSSEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 5566666666643 345444443 23555666666665
No 83
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=25.39 E-value=1.4e+02 Score=20.36 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=22.9
Q ss_pred cEEEEEcch-hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHh
Q 037034 13 ALIAMIADE-DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFT 63 (130)
Q Consensus 13 ~kIaVIGD~-dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~ 63 (130)
..+.+|||. .-+.+.+.+|+..+ .+......+++.+.+.++.
T Consensus 138 ~~~~~igD~~~Di~~a~~aG~~~i---------~v~~g~~~~~~~~~l~~~~ 180 (187)
T 2wm8_A 138 SQMIFFDDERRNIVDVSKLGVTCI---------HIQNGMNLQTLSQGLETFA 180 (187)
T ss_dssp GGEEEEESCHHHHHHHHTTTCEEE---------ECSSSCCHHHHHHHHHHHH
T ss_pred HHEEEEeCCccChHHHHHcCCEEE---------EECCCCChHHHHHHHHHHH
Confidence 346777773 33456677777532 2222233456666666554
No 84
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=25.38 E-value=1.3e+02 Score=27.33 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.4
Q ss_pred ceEEEecCCCcHHHHHHH----HHHHhcCCCeeEEEEe--------hHHH---HHHHHHHHhh-----CCCCcEEEEcCC
Q 037034 41 TNYLIVDSKTTVKAIEDA----FKEFTTKEDIAIVLIS--------QYVA---NMIRFLVDSY-----NKPIPAILEIPS 100 (130)
Q Consensus 41 ~n~~v~~~~t~~ee~~~~----~~~l~~~~digII~It--------e~~a---~~i~~~I~~~-----~~~~P~Iv~IPs 100 (130)
.||.-..-..+.+.+.++ |+-+++++++-.|||. +.+| +-|-+.+.++ ....|+||.+-+
T Consensus 302 ANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~G 381 (829)
T 3pff_A 302 ANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGG 381 (829)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBS
T ss_pred ceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCC
Confidence 578776555556777666 7767778887777764 5566 4444444443 246899999976
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCccccCC
Q 037034 101 KDHPYDPAHDSVLSRVKNLFSAESVASGR 129 (130)
Q Consensus 101 ~~g~~~~~~d~i~~~V~~AiGvdi~~~~~ 129 (130)
.+.. .++. |.+..-+-+|.+|...|+
T Consensus 382 tN~e--eg~~-il~~~g~~lgl~i~v~g~ 407 (829)
T 3pff_A 382 PNYQ--EGLR-VMGEVGKTTGIPIHVFGT 407 (829)
T ss_dssp TTHH--HHHH-HHHHHHHHHCCCEEEECT
T ss_pred CCHH--HHHH-HHHhCccccCCcEEEeCC
Confidence 5532 3333 444455566887766543
No 85
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=25.17 E-value=2.2e+02 Score=21.50 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=46.5
Q ss_pred CCCCCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 6 QIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 6 ~~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
|-......+|+|+++.|.+.==+-+|.+ | |-. +|+.+.+++- .-+|-.++-|.++...+...+
T Consensus 66 P~g~gk~~kV~Vfa~~~~~~eAk~aGAd---------~-vG~-----~dLi~kIk~g--~~~fD~~iAtpd~m~~vg~~L 128 (229)
T 3u42_A 66 PHGLGKQVRVLAIAKGEKIKEAEEAGAD---------Y-VGG-----EEIIQKILDG--WMDFDAVVATPDVMGAVGSKL 128 (229)
T ss_dssp SSSCSTTSCEEEECCTHHHHHHHHTTCS---------E-EEC-----THHHHHHHTT--CCCCSEEEECGGGHHHHHHHH
T ss_pred CCCCCCceEEEEecChHhHHHHHhcCCc---------e-eCc-----HHHHHHHhcC--CccccEEEEchHHHHHHHHhh
Confidence 3445567899999999999888999997 3 323 3444444432 457889999999887775555
Q ss_pred Hhh
Q 037034 86 DSY 88 (130)
Q Consensus 86 ~~~ 88 (130)
-..
T Consensus 129 G~i 131 (229)
T 3u42_A 129 GRI 131 (229)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 86
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=25.13 E-value=44 Score=22.75 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=25.7
Q ss_pred cEEEEEcc-hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhc
Q 037034 13 ALIAMIAD-EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTT 64 (130)
Q Consensus 13 ~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~ 64 (130)
..+.+||| ..-+.+.+.+|+.. +..+. .+++++.++++++
T Consensus 168 ~~~~~igD~~~Di~~a~~aG~~~---------~~~~~---~~~~~~~l~~~l~ 208 (211)
T 2i6x_A 168 EETLFIDDGPANVATAERLGFHT---------YCPDN---GENWIPAITRLLR 208 (211)
T ss_dssp GGEEEECSCHHHHHHHHHTTCEE---------ECCCT---TCCCHHHHHHHHT
T ss_pred HHeEEeCCCHHHHHHHHHcCCEE---------EEECC---HHHHHHHHHHHHh
Confidence 45788999 44478889999973 23332 1456666666653
No 87
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.94 E-value=51 Score=21.09 Aligned_cols=16 Identities=6% Similarity=-0.064 Sum_probs=9.1
Q ss_pred CCCCCcEEEEEcchhh
Q 037034 8 PTKSSALIAMIADEDT 23 (130)
Q Consensus 8 ~~~~~~kIaVIGD~dt 23 (130)
......+|.++.|...
T Consensus 4 ~~~~~~~iLivd~~~~ 19 (147)
T 2zay_A 4 AEGKWWRIMLVDTQLP 19 (147)
T ss_dssp ----CEEEEEECTTGG
T ss_pred ccCCCceEEEEeCCHH
Confidence 3345578999998543
No 88
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=24.90 E-value=1.9e+02 Score=20.90 Aligned_cols=23 Identities=9% Similarity=0.536 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe
Q 037034 52 VKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 52 ~ee~~~~~~~l~~~~digII~It 74 (130)
.+++.++|++++.+.++-+|++|
T Consensus 63 ~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 63 IEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCEEEEc
Confidence 68999999998865567788888
No 89
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=24.63 E-value=40 Score=24.55 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=40.1
Q ss_pred CCCcEEEEEcc--hhhHHHHHHhcccccccCCcceEEEecCCC--cHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 10 KSSALIAMIAD--EDTVTGFLLAGVGNVDLRRKTNYLIVDSKT--TVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 10 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t--~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
.++++||++-. .+....-.+.|++..-....-++.+.+.+. +.+.-.+.++.++.+.==|||+..... +.+.+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-~~~~~~~ 81 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDP-HAYEHNL 81 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSST-TSSTTTH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-hHHHHHH
Confidence 35578888753 222222233344321111111134444433 456666778888754433666654332 2222234
Q ss_pred HhhCCCCcEEEE
Q 037034 86 DSYNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
+++....|+|+.
T Consensus 82 ~~~~~~iPvV~~ 93 (304)
T 3o1i_D 82 KSWVGNTPVFAT 93 (304)
T ss_dssp HHHTTTSCEEEC
T ss_pred HHHcCCCCEEEe
Confidence 443355787764
No 90
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.39 E-value=86 Score=20.40 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHH
Q 037034 8 PTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYV 77 (130)
Q Consensus 8 ~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~ 77 (130)
|+.+..+|.++.|.....-..-.-++.. +|.+... .+..++++ ++....+.+|++.-.+
T Consensus 3 ~~~~~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~----~~~~~al~-~l~~~~~dlii~D~~l 61 (154)
T 3gt7_A 3 LSNRAGEILIVEDSPTQAEHLKHILEET------GYQTEHV----RNGREAVR-FLSLTRPDLIISDVLM 61 (154)
T ss_dssp ----CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEE----SSHHHHHH-HHTTCCCSEEEEESCC
T ss_pred cccCCCcEEEEeCCHHHHHHHHHHHHHC------CCEEEEe----CCHHHHHH-HHHhCCCCEEEEeCCC
Confidence 3455688999998554333222112110 0222221 22233444 3345678888888543
No 91
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=24.26 E-value=96 Score=21.14 Aligned_cols=52 Identities=6% Similarity=0.101 Sum_probs=29.8
Q ss_pred HHHHhcCCCeeEEEEehHHHHH-HHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHh
Q 037034 59 FKEFTTKEDIAIVLISQYVANM-IRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNL 119 (130)
Q Consensus 59 ~~~l~~~~digII~Ite~~a~~-i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~A 119 (130)
+.++-..-|+++|++....... +++.++ ...+.|+.-|+. . .+.+.+.++++
T Consensus 71 l~~l~~~vDlvvi~vp~~~~~~vv~~~~~---~gi~~i~~~~g~---~---~~~l~~~a~~~ 123 (144)
T 2d59_A 71 VLDIPDKIEVVDLFVKPKLTMEYVEQAIK---KGAKVVWFQYNT---Y---NREASKKADEA 123 (144)
T ss_dssp GGGCSSCCSEEEECSCHHHHHHHHHHHHH---HTCSEEEECTTC---C---CHHHHHHHHHT
T ss_pred HHHcCCCCCEEEEEeCHHHHHHHHHHHHH---cCCCEEEECCCc---h---HHHHHHHHHHc
Confidence 4445556789999988765543 333333 224566655542 1 35677777653
No 92
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.06 E-value=1.9e+02 Score=20.18 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe
Q 037034 52 VKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 52 ~ee~~~~~~~l~~~~digII~It 74 (130)
.+++.++++++.+..++-+|+.|
T Consensus 66 ~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 66 KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEec
Confidence 58899999988877888899988
No 93
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.97 E-value=1.4e+02 Score=19.12 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=10.3
Q ss_pred CCcEEEEEcchhhHH
Q 037034 11 SSALIAMIADEDTVT 25 (130)
Q Consensus 11 ~~~kIaVIGD~dtv~ 25 (130)
+..+|.++.|.....
T Consensus 6 ~~~~iLivdd~~~~~ 20 (154)
T 2rjn_A 6 KNYTVMLVDDEQPIL 20 (154)
T ss_dssp SCCEEEEECSCHHHH
T ss_pred CCCeEEEEcCCHHHH
Confidence 357899998855443
No 94
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=23.95 E-value=96 Score=21.00 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=18.5
Q ss_pred CCCCCCCCCCcEEEEEcchhhHHHH
Q 037034 3 GRAQIPTKSSALIAMIADEDTVTGF 27 (130)
Q Consensus 3 ~~~~~~~~~~~kIaVIGD~dtv~GF 27 (130)
.+.||-+...+.+|+|...|...-.
T Consensus 49 s~~pVvd~~~~lvGiit~~Di~~~~ 73 (156)
T 3k6e_A 49 TRVPVVTDEKQFVGTIGLRDIMAYQ 73 (156)
T ss_dssp SEEEEECC-CBEEEEEEHHHHHHHH
T ss_pred cEEEEEcCCCcEEEEEEecchhhhh
Confidence 3578887778899999999876543
No 95
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.91 E-value=1.3e+02 Score=18.47 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCeeEEEEehHHHH----HHHHHHHhhCCCCcEEEEcCC
Q 037034 57 DAFKEFTTKEDIAIVLISQYVAN----MIRFLVDSYNKPIPAILEIPS 100 (130)
Q Consensus 57 ~~~~~l~~~~digII~Ite~~a~----~i~~~I~~~~~~~P~Iv~IPs 100 (130)
++++. +.+..+.+|++.-.+.+ .+-+.+.+.....|.|+.-+.
T Consensus 42 ~a~~~-l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 42 DALEL-LGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHH-HTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHH-HhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 44443 34667889998865432 111222222345676665443
No 96
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.76 E-value=92 Score=22.95 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=27.4
Q ss_pred EEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC-CCCcEEEE
Q 037034 44 LIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN-KPIPAILE 97 (130)
Q Consensus 44 ~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~-~~~P~Iv~ 97 (130)
.+.+.+.+.+.-.+.++.++++.==|||+.... .+...+.++.+. ...|+|+.
T Consensus 37 ~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-~~~~~~~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 37 DLQYADDDIPNQLSQIENMVTKGVKVLVIASID-GTTLSDVLKQAGEQGIKVIAY 90 (330)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS-GGGGHHHHHHHHHTTCEEEEE
T ss_pred EEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC-chhHHHHHHHHHHCCCCEEEE
Confidence 343444455666677888875443355554432 222333344332 66887763
No 97
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=23.29 E-value=2.3e+02 Score=23.08 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCcEEEEEcchhhHHHHH----HhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCC-ee-EEEEehHH
Q 037034 11 SSALIAMIADEDTVTGFL----LAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKED-IA-IVLISQYV 77 (130)
Q Consensus 11 ~~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~d-ig-II~Ite~~ 77 (130)
..+++++.||.+.+.++. =.|++-+ +++... ..++.++.++++++... .. .|+.+.+.
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~L~elG~~vv-------~v~~~~--~~~~~~~~~~~ll~~~~~~~~~v~~~~d~ 374 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKFIIELGAIPK-------YVVTGT--PGMKFQKEIDAMLAEAGIEGSKVKVEGDF 374 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHTTTCEEE-------EEEESS--CCHHHHHHHHHHHHTTTCCSCEEEESCBH
T ss_pred CCCEEEEEcCchHHHHHHHHHHHCCCEEE-------EEEeCC--CCHHHHHHHHHHHHhcCCCCCEEEECCCH
Confidence 358999999999888763 3466532 333222 23666777888776543 33 45555343
No 98
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=22.74 E-value=1.2e+02 Score=24.26 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCccccC
Q 037034 52 VKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASG 128 (130)
Q Consensus 52 ~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~~~ 128 (130)
.+|++++++. ..-+|.+.+.-.+.+++.+...+. -+.++.. .+...+.++++. ..|+|+..+|
T Consensus 217 l~e~~eAl~a-----GaDiImLDn~s~~~l~~av~~~~~--~v~leaS-----GGIt~~~i~~~A--~tGVD~IsvG 279 (300)
T 3l0g_A 217 ISQVEESLSN-----NVDMILLDNMSISEIKKAVDIVNG--KSVLEVS-----GCVNIRNVRNIA--LTGVDYISIG 279 (300)
T ss_dssp HHHHHHHHHT-----TCSEEEEESCCHHHHHHHHHHHTT--SSEEEEE-----SSCCTTTHHHHH--TTTCSEEECG
T ss_pred HHHHHHHHHc-----CCCEEEECCCCHHHHHHHHHhhcC--ceEEEEE-----CCCCHHHHHHHH--HcCCCEEEeC
Confidence 5777776662 456999999888999998887653 2455652 233457788888 6889987765
No 99
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=22.65 E-value=1.3e+02 Score=18.24 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcC-CCeeEEEEehHHHHHHHHHHHhhC-CCCcEEEEcCCCCCC---CChhhhHHHHHHHHhcC
Q 037034 53 KAIEDAFKEFTTK-EDIAIVLISQYVANMIRFLVDSYN-KPIPAILEIPSKDHP---YDPAHDSVLSRVKNLFS 121 (130)
Q Consensus 53 ee~~~~~~~l~~~-~digII~Ite~~a~~i~~~I~~~~-~~~P~Iv~IPs~~g~---~~~~~d~i~~~V~~AiG 121 (130)
..+...|+++.+. +++.++.++-+- -++...+|. ...|+++.+++.... .+...+.+.+.+++.+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~lg 107 (107)
T 1gh2_A 37 LRIAPAFSSMSNKYPQAVFLEVDVHQ---CQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHLE 107 (107)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEETTT---SHHHHHHTTCCSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECcc---CHHHHHhcCCCcccEEEEEECCeEEEEEeCCCHHHHHHHHHHhcC
Confidence 4555566665532 456666666432 233344565 789988877543200 01122448889988876
No 100
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=22.41 E-value=2.2e+02 Score=20.44 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=10.0
Q ss_pred CcEEEEEcchhhHH
Q 037034 12 SALIAMIADEDTVT 25 (130)
Q Consensus 12 ~~kIaVIGD~dtv~ 25 (130)
..+|.++.|...+.
T Consensus 37 ~~~ILivdd~~~~~ 50 (249)
T 3q9s_A 37 EQRILVIEDDHDIA 50 (249)
T ss_dssp CCEEEEECSCHHHH
T ss_pred CCEEEEEECCHHHH
Confidence 36899999955443
No 101
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=22.11 E-value=1.4e+02 Score=21.16 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhCCCCcEEEE
Q 037034 51 TVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILE 97 (130)
Q Consensus 51 ~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~~~~P~Iv~ 97 (130)
+.+...+.++.+..+.==|||+......+..-+.+.+ ...|+|+.
T Consensus 44 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~iPvV~~ 88 (275)
T 3d8u_A 44 SIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEA--SNTPVLEI 88 (275)
T ss_dssp CHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHH--HTCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh--CCCCEEEE
Confidence 3455566788777554346777654322222222322 45787663
No 102
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.98 E-value=2.6e+02 Score=21.02 Aligned_cols=73 Identities=8% Similarity=0.010 Sum_probs=0.0
Q ss_pred cEEEEEcch-------hhHHHHHHh----cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHH
Q 037034 13 ALIAMIADE-------DTVTGFLLA----GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMI 81 (130)
Q Consensus 13 ~kIaVIGD~-------dtv~GFrLa----Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i 81 (130)
++|++|+.. +-..||+-+ |++.. .+...+.+.++..+++++++++..+||+..++.++-.+
T Consensus 185 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~--------~v~~~~~~~~~~~~~~~~ll~~~~~ai~~~nD~~A~g~ 256 (348)
T 3bil_A 185 LPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQ--------LVFLGGYEQSVGFEGATKLLDQGAKTLFAGDSMMTIGV 256 (348)
T ss_dssp CSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC--------EEECCCSSHHHHHHHHHHHHHTTCSEEEESSHHHHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCcc--------EEEcCCCCHHHHHHHHHHHHcCCCCEEEEcChHHHHHH
Q ss_pred HHHHHhhCCCCc
Q 037034 82 RFLVDSYNKPIP 93 (130)
Q Consensus 82 ~~~I~~~~~~~P 93 (130)
-..+.+..-..|
T Consensus 257 ~~al~~~G~~vP 268 (348)
T 3bil_A 257 IEACHKAGLVIG 268 (348)
T ss_dssp HHHHHHTTCCBT
T ss_pred HHHHHHcCCCCC
No 103
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.96 E-value=2.1e+02 Score=19.93 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCC-eeEEEEehHHHHHHHHHHHhhC
Q 037034 24 VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKED-IAIVLISQYVANMIRFLVDSYN 89 (130)
Q Consensus 24 v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~d-igII~Ite~~a~~i~~~I~~~~ 89 (130)
..-|+..|++.+ .-..+.+.+++.++.++. +.+ +++=.......+.+++.++.++
T Consensus 39 a~~l~~~G~eVi---------~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 39 ARALRDAGFEVV---------YTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp HHHHHHTTCEEE---------CCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEE---------ECCCCCCHHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHH
Confidence 345677888733 123455678888777654 334 3333333445566777766664
No 104
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.88 E-value=1.9e+02 Score=19.77 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred EEEcchhhHHHHHHh----cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 037034 16 AMIADEDTVTGFLLA----GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 16 aVIGD~dtv~GFrLa----Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It 74 (130)
.+-.|++|+.-|+=. |+.. -.+. +++|++..+++|.+.-+-.|+++-
T Consensus 7 vfstdeetlrkfkdiikkngfkv--------rtvr----spqelkdsieelvkkynativvvv 57 (134)
T 2l69_A 7 VFSTDEETLRKFKDIIKKNGFKV--------RTVR----SPQELKDSIEELVKKYNATIVVVV 57 (134)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEE--------EEEC----SHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHhcCceE--------EEec----CHHHHHHHHHHHHHHhCCeEEEEE
Confidence 344679999888743 4431 1232 359999999999877665555544
No 105
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=21.76 E-value=2.1e+02 Score=21.95 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCC----CeeEEEE
Q 037034 24 VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKE----DIAIVLI 73 (130)
Q Consensus 24 v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~----digII~I 73 (130)
--=|+-.|++.. +. .+.+.+++.++|+++...+ |+.++++
T Consensus 52 ~~~f~~LGF~V~--------~~--~dlt~~em~~~l~~~~~~~h~~~d~~vv~i 95 (278)
T 3od5_A 52 TRRFSDLGFEVK--------CF--NDLKAEELLLKIHEVSTVSHADADCFVCVF 95 (278)
T ss_dssp HHHHHHTTCEEE--------EE--ESCCHHHHHHHHHHHHHSCCTTBSCEEEEE
T ss_pred HHHHHHCCCEEE--------Ee--cCCCHHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 345777888721 22 2446799999999986432 4555544
No 106
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.31 E-value=1.6e+02 Score=21.98 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCCCCcEEEEEcch--hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH
Q 037034 8 PTKSSALIAMIADE--DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I 85 (130)
++.+++.|+++-.. +....-.+.|++..-....-...+.+.+.+.+.-.+.++.++.+.==|||+......+...+.+
T Consensus 58 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l 137 (339)
T 3h5o_A 58 ASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERIL 137 (339)
T ss_dssp -----CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHH
T ss_pred hcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHH
Confidence 34556789887431 1111222333332110011112333333344566677887776554577777643333222333
Q ss_pred HhhCCCCcEEEE
Q 037034 86 DSYNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
.+ ...|+|+.
T Consensus 138 ~~--~~iPvV~~ 147 (339)
T 3h5o_A 138 SQ--HALPVVYM 147 (339)
T ss_dssp HH--TTCCEEEE
T ss_pred hc--CCCCEEEE
Confidence 32 56787764
No 107
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.23 E-value=2.2e+02 Score=21.24 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=28.1
Q ss_pred EEecCCCcHHHHHHHHHHHhcC-CCe-eEEEEehHHHHHHHHHHHhhC-CCCcEEEE
Q 037034 44 LIVDSKTTVKAIEDAFKEFTTK-EDI-AIVLISQYVANMIRFLVDSYN-KPIPAILE 97 (130)
Q Consensus 44 ~v~~~~t~~ee~~~~~~~l~~~-~di-gII~Ite~~a~~i~~~I~~~~-~~~P~Iv~ 97 (130)
.+.+.+.+.+.-.+.++.++.+ ..+ |||+.... ....+.++.+. ...|+|..
T Consensus 38 ~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~--~~~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 38 RILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ--YVAPQILRLSQGSGIKLFIV 92 (350)
T ss_dssp EEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS--SHHHHHHHHHTTSCCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch--hhHHHHHHHHHhCCCcEEEE
Confidence 3444444456666778888874 343 55555421 12334455543 67887763
No 108
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=21.14 E-value=1.1e+02 Score=23.12 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=24.9
Q ss_pred HHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCC----CeeEEEE
Q 037034 25 TGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKE----DIAIVLI 73 (130)
Q Consensus 25 ~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~----digII~I 73 (130)
--|+-.|++.. +.. +.+.+++.++++++.++. |+.++++
T Consensus 48 ~~f~~LgF~V~--------~~~--dlt~~em~~~l~~~~~~~~~~~d~~v~~~ 90 (250)
T 2j32_A 48 ETFRNLKYEVR--------NKN--DLTREEIVELMRDVSKEDHSKRSSFVCVL 90 (250)
T ss_dssp HHHHHTTCEEE--------EEE--SCCHHHHHHHHHHHHTSCCTTEEEEEEEE
T ss_pred HHHHHCCCEEE--------EEe--CCCHHHHHHHHHHHHHhhccCCCEEEEEE
Confidence 44777888621 233 346799999999998653 3455444
No 109
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.01 E-value=1.7e+02 Score=18.66 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=8.4
Q ss_pred cEEEEEcchhh
Q 037034 13 ALIAMIADEDT 23 (130)
Q Consensus 13 ~kIaVIGD~dt 23 (130)
.+|.++.|...
T Consensus 5 ~~ILivdd~~~ 15 (151)
T 3kcn_A 5 ERILLVDDDYS 15 (151)
T ss_dssp CEEEEECSCHH
T ss_pred CeEEEEeCCHH
Confidence 68999998544
No 110
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.96 E-value=93 Score=20.04 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhh--CCCCcEEEEcCCCC
Q 037034 53 KAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSY--NKPIPAILEIPSKD 102 (130)
Q Consensus 53 ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~--~~~~P~Iv~IPs~~ 102 (130)
+++.++++ +....++++.++..+.....+..+ ....|.+...+++.
T Consensus 21 ~~v~kai~----~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~ 68 (99)
T 3j21_Z 21 NETIRLAK----TGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSV 68 (99)
T ss_dssp HHHHHHHH----HTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSC
T ss_pred HHHHHHHH----cCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHH
Confidence 55555443 466788888888777777777664 26688777766655
No 111
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=20.93 E-value=1.1e+02 Score=26.21 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCCcEEEEEcchhhHHHHH--------------------HhcccccccCCcceE-EEecCCC-----cHHHHHHHHHHHh
Q 037034 10 KSSALIAMIADEDTVTGFL--------------------LAGVGNVDLRRKTNY-LIVDSKT-----TVKAIEDAFKEFT 63 (130)
Q Consensus 10 ~~~~kIaVIGD~dtv~GFr--------------------LaGi~~~~~~~~~n~-~v~~~~t-----~~ee~~~~~~~l~ 63 (130)
.+...++||.|-+-|+|+- ++||+. | ++.|-.| +++++.++++.+.
T Consensus 88 ~kgn~VaVVTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId~--------lPI~LD~gt~~~~~d~defve~v~~~~ 159 (487)
T 3nv9_A 88 LRGNFVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDA--------VPICIDSKNKEGKNDPDAVIEFVQRIQ 159 (487)
T ss_dssp GGGGEEEEEECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCEE--------EEEECCCBCTTSCBCHHHHHHHHHHHG
T ss_pred ccCCEEEEEEcCceeeeccccccccCCchhhhHHHHHHhcCCCce--------eeeEEeCCCccccCCHHHHHHHHHHhC
Confidence 3446899999988888864 345542 3 3333210 4689999888774
Q ss_pred cCCCeeEEEEehHHHHHHHHHHHhhC
Q 037034 64 TKEDIAIVLISQYVANMIRFLVDSYN 89 (130)
Q Consensus 64 ~~~digII~Ite~~a~~i~~~I~~~~ 89 (130)
+.+|.|=+.+.-+....+.+++|+
T Consensus 160 --P~fG~InlEDf~ap~af~il~ryr 183 (487)
T 3nv9_A 160 --HTFGAINLEDISQPNCYKILDVLR 183 (487)
T ss_dssp --GGCSEEEECSCCTTHHHHHHHHHH
T ss_pred --CCCCeecHhhcCCchHHHHHHHHH
Confidence 788877766554445555555554
No 112
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.88 E-value=2e+02 Score=20.57 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=40.6
Q ss_pred CCCCCcEEEEEcch--hhHHHHHHhcccccccCCcce-EEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHH
Q 037034 8 PTKSSALIAMIADE--DTVTGFLLAGVGNVDLRRKTN-YLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFL 84 (130)
Q Consensus 8 ~~~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~n-~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~ 84 (130)
.+.+++.||++-.. +....-.+.|++..-....-+ ..+.+...+.+.-.+.++.+..+.==|||+.. +.
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--------~~ 77 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA--------FT 77 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--------CC
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--------hH
Confidence 34566889998542 222333344443221111111 22333333445556667777755444777776 23
Q ss_pred HHhhC-CCCcEEEE
Q 037034 85 VDSYN-KPIPAILE 97 (130)
Q Consensus 85 I~~~~-~~~P~Iv~ 97 (130)
++++. ...|+|+.
T Consensus 78 ~~~~~~~~iPvV~~ 91 (277)
T 3hs3_A 78 IPPNFHLNTPLVMY 91 (277)
T ss_dssp CCTTCCCSSCEEEE
T ss_pred HHHHHhCCCCEEEE
Confidence 34443 56887663
No 113
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=20.87 E-value=82 Score=23.32 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=29.8
Q ss_pred cEEEEEcch--hhH------HHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhc
Q 037034 13 ALIAMIADE--DTV------TGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTT 64 (130)
Q Consensus 13 ~kIaVIGD~--dtv------~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~ 64 (130)
++.++||++ .+. ..|+..|++.. |... +.+++++.++++.+-.
T Consensus 2 ~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~-------y~~~--~~~~~~l~~~i~~l~~ 52 (263)
T 2d5c_A 2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGS-------YEAW--DTPLEALPGRLKEVRR 52 (263)
T ss_dssp EEEEEEESSCTTCSHHHHHHHHHHHTTCCEE-------EEEE--ECCGGGHHHHHHHHHH
T ss_pred eEEEEECCCcccccCHHHHHHHHHHcCCCCE-------EEEE--eCCHHHHHHHHHhccc
Confidence 468999996 443 38999999854 5443 2345788888887753
No 114
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=20.73 E-value=2.7e+02 Score=20.75 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHH-------HHhcCCCeeEEEEehHHHHHH
Q 037034 9 TKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK-------EFTTKEDIAIVLISQYVANMI 81 (130)
Q Consensus 9 ~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~-------~l~~~~digII~Ite~~a~~i 81 (130)
...+.+|+|+++.+-..=-+-+|++ ++ . .+++ +.++ .++ .+|-+++-|.++...+
T Consensus 54 ~~k~~~V~Vf~~~~~~~~A~~aGa~----------~v-g----~~~L-~ki~~~kk~~r~l~--~~fD~~lA~~~~m~~l 115 (219)
T 1i2a_A 54 RGKEAKIAVIGTGDLAKQAEELGLT----------VI-R----KEEI-EELGKNKRKLRKIA--KAHDFFIAQADLMPLI 115 (219)
T ss_dssp CSSCCCEEEECCHHHHHHHHHTTCE----------EE-C----HHHH-HHHHHCHHHHHHHH--HHCSEEEEEGGGHHHH
T ss_pred CCCCcEEEEEcCchhHHHHHHCCCC----------EE-c----HHHH-HHHHhhhhhhhhch--hhCCEEEECHHHHHHH
Confidence 3456899999998777767788885 22 2 2777 4453 232 4688999999998888
Q ss_pred HHHHHhh---CCCCcEE
Q 037034 82 RFLVDSY---NKPIPAI 95 (130)
Q Consensus 82 ~~~I~~~---~~~~P~I 95 (130)
...+-.. +...|.-
T Consensus 116 ~k~LGk~LgprgkmP~p 132 (219)
T 1i2a_A 116 GRYMGVILGPRGKMPKP 132 (219)
T ss_dssp HHHTHHHHGGGTCCCEE
T ss_pred HHHHhhhhcccCCCCcc
Confidence 7755442 3566643
No 115
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.59 E-value=2.9e+02 Score=21.74 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=54.8
Q ss_pred EEEEcc-hhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhCCCCc
Q 037034 15 IAMIAD-EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIP 93 (130)
Q Consensus 15 IaVIGD-~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~~~~P 93 (130)
|++.|+ .+.+.-++-.+-+ .+ ..| +-+ +.+|++++++ -..-+|.+...-.+.+++.+...+..
T Consensus 179 i~~~G~i~~Av~~ar~~~~~-----~~--IeV-Ev~-tl~ea~eAl~-----aGaD~I~LDn~~~~~l~~av~~~~~~-- 242 (287)
T 3tqv_A 179 IRSAGGIAKAVTKAKKLDSN-----KV--VEV-EVT-NLDELNQAIA-----AKADIVMLDNFSGEDIDIAVSIARGK-- 242 (287)
T ss_dssp C----CHHHHHHHHHHHCTT-----SC--EEE-EES-SHHHHHHHHH-----TTCSEEEEESCCHHHHHHHHHHHTTT--
T ss_pred HHHhCCHHHHHHHHHhhCCC-----Cc--EEE-EeC-CHHHHHHHHH-----cCCCEEEEcCCCHHHHHHHHHhhcCC--
Confidence 667787 5666667765432 11 222 222 2477777665 24668999988888899888876532
Q ss_pred EEEEcCCCCCCCChhhhHHHHHHHHhcCCCccccC
Q 037034 94 AILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASG 128 (130)
Q Consensus 94 ~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~~~ 128 (130)
+.++. +.+...+.++++. ..|+|+..+|
T Consensus 243 v~iea-----SGGIt~~~i~~~a--~tGVD~IsvG 270 (287)
T 3tqv_A 243 VALEV-----SGNIDRNSIVAIA--KTGVDFISVG 270 (287)
T ss_dssp CEEEE-----ESSCCTTTHHHHH--TTTCSEEECS
T ss_pred ceEEE-----ECCCCHHHHHHHH--HcCCCEEEEC
Confidence 44444 2233457788888 6889887765
No 116
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=20.45 E-value=1.2e+02 Score=19.79 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=18.1
Q ss_pred CeeEEEEehHHHHHHHHHHHhhCCCCcEEEEcCCC
Q 037034 67 DIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSK 101 (130)
Q Consensus 67 digII~Ite~~a~~i~~~I~~~~~~~P~Iv~IPs~ 101 (130)
+..+|.+...-.+..++.++.+....=-+..+|+.
T Consensus 67 d~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 67 STVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCH
Confidence 33333333333455666666665443456778874
No 117
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=20.37 E-value=1.7e+02 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe
Q 037034 52 VKAIEDAFKEFTTKEDIAIVLIS 74 (130)
Q Consensus 52 ~ee~~~~~~~l~~~~digII~It 74 (130)
.+++.++|++++++.++-+|++|
T Consensus 66 ~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 66 KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC
Confidence 68899999999866567788887
No 118
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=20.36 E-value=2.2e+02 Score=20.39 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=26.5
Q ss_pred EEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhh-CCCCcEEEE
Q 037034 43 YLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSY-NKPIPAILE 97 (130)
Q Consensus 43 ~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~-~~~~P~Iv~ 97 (130)
+.+.+...+.+...+.++.++.+.==|||+..... ....+.++.+ +...|+|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-~~~~~~~~~~~~~~iPvV~~ 90 (309)
T 2fvy_A 36 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-AAAGTVIEKARGQNVPVVFF 90 (309)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-GGHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-chhHHHHHHHHHCCCcEEEe
Confidence 33334333445566778878754433666654222 1112233333 256787764
No 119
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=20.35 E-value=1.3e+02 Score=20.68 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=17.7
Q ss_pred cEEEEEcc-hhhHHHHHHhcccc
Q 037034 13 ALIAMIAD-EDTVTGFLLAGVGN 34 (130)
Q Consensus 13 ~kIaVIGD-~dtv~GFrLaGi~~ 34 (130)
..+.+||| ..-+.+.+.+|+..
T Consensus 183 ~~~i~vGD~~~Di~~a~~aG~~~ 205 (247)
T 3dv9_A 183 NEALVIENAPLGVQAGVAAGIFT 205 (247)
T ss_dssp GGEEEEECSHHHHHHHHHTTSEE
T ss_pred hheEEEeCCHHHHHHHHHCCCeE
Confidence 45889999 55688999999864
No 120
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=20.04 E-value=1.5e+02 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=16.3
Q ss_pred CCcEEEEEcc------------hhhHHHHHHhccc
Q 037034 11 SSALIAMIAD------------EDTVTGFLLAGVG 33 (130)
Q Consensus 11 ~~~kIaVIGD------------~dtv~GFrLaGi~ 33 (130)
+..+||++|| ...+.++...|++
T Consensus 190 ~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~ 224 (399)
T 3q98_A 190 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMD 224 (399)
T ss_dssp TTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCE
T ss_pred CCCEEEEEEecccccCcchHHHHHHHHHHHHcCCE
Confidence 4578999976 3345577777886
Done!