BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037035
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 115/195 (58%), Gaps = 5/195 (2%)
Query: 25 SDPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFK-RAVTFGD 82
SDPDPLQD CVADLD +S+NG CKP SE AVT D
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 83 VSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFV---TTNNTFFS 139
V+ +P NT GVS+ R+D GG NPPH HPRATE G+V+KG +LVG + + N +S
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 140 KVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLT 199
+V+ G F+IPR +HFQ NVGK +A V FNSQNPG+ TLF ++P +P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 200 KSFLVSDDVINAIRS 214
K+ V V+ ++S
Sbjct: 181 KALRVEAGVVELLKS 195
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 115/195 (58%), Gaps = 5/195 (2%)
Query: 25 SDPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFK-RAVTFGD 82
SDPDPLQD CVADLD +S+NG CKP SE AVT D
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 83 VSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFV---TTNNTFFS 139
V+ +P NT GVS+ R+D GG NPPH HPRATE G+V+KG +LVG + + N +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 140 KVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLT 199
+V+ G F+IPR +HFQ NVGK +A V FNSQNPG+ TLF ++P +P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 200 KSFLVSDDVINAIRS 214
K+ V V+ ++S
Sbjct: 181 KALRVEAGVVELLKS 195
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 115/195 (58%), Gaps = 5/195 (2%)
Query: 25 SDPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFK-RAVTFGD 82
+DPDPLQD CVADLD +S+NG CKP SE AVT D
Sbjct: 1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 83 VSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFV---TTNNTFFS 139
V+ +P NT GVS+ R+D GG NPPH HPRATE G+V+KG +LVG + + N +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 140 KVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLT 199
+V+ G F+IPR +HFQ NVGK +A V FNSQNPG+ TLF ++P +P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 200 KSFLVSDDVINAIRS 214
K+ V V+ ++S
Sbjct: 181 KALRVEAGVVELLKS 195
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 91 TQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLI 150
++G++ + L G I H H A E V++GR + + + G ++
Sbjct: 49 SKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYF 108
Query: 151 PRAHVHFQLNVGKGKATFVPIFN 173
PR H +G A F+ +FN
Sbjct: 109 PRGWGHSIEGIGPDTAKFLLVFN 131
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 99 IDLGVGGINPPHTHPRATEAGIVLKGRV-LVGFVTTNNTFFSKVLTPGMVFLIPRAHVHF 157
I L G + H HP A E VL G + L F + S+ L G V +P+ + H
Sbjct: 239 IHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSR-LQQGDVGYVPKGYGHA 297
Query: 158 QLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAI 212
N + V +FN + D + T +NPS SVL +F +S ++ +
Sbjct: 298 IRNSSQKPLDIVVVFNDGDYQSID-LSTWLASNPS---SVLGNTFQISPELTKKL 348
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 86 FPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-NTFFSKVLTP 144
PA+ G+S + L GI PH + A V +G+ V V N F L
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRR 417
Query: 145 GMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLV 204
G + ++P+ V + G+ +V +F + + VS + +F ++P+ VL+ S+ +
Sbjct: 418 GQLLVVPQNFVVAEQG-GEQGLEYV-VFKTHHNAVSSYIKDVFR---AIPSEVLSNSYNL 472
Query: 205 SDDVINAIR 213
+ ++
Sbjct: 473 GQSQVRQLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 86 FPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-NTFFSKVLTP 144
PA+ G+S + L GI PH + A V +G+ V V N F L
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRR 418
Query: 145 GMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLV 204
G + ++P+ V + G+ +V +F + + VS + +F ++P+ VL+ S+ +
Sbjct: 419 GQLLVVPQNFVVAEQG-GEQGLEYV-VFKTHHNAVSSYIKDVFR---AIPSEVLSNSYNL 473
Query: 205 SDDVINAIR 213
+ ++
Sbjct: 474 GQSQVRQLK 482
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 134 NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSV 193
NNT F +V+ F+I + K KAT PI N N G+ ++ GTL
Sbjct: 37 NNTIFHRVING---FMIQGGGFEPGM---KQKATKEPIKNEANNGLKNTRGTLAMARTQA 90
Query: 194 PNSVLTKSFL--VSDDVIN 210
P+S + F+ V +D +N
Sbjct: 91 PHSATAQFFINVVDNDFLN 109
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 186 LFDTNPSVPNSVLTKSFLVSDDVINAIRSARTSNKSGHQFNTRSS 230
FD NP N VL+K F +++ + +S KSG RSS
Sbjct: 127 YFDENPYFENKVLSKEFHMNESGDPSSKSTEIKWKSGKDMTKRSS 171
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 134 NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSV 193
NNT F +V+ F+I + K KAT PI N N G+ ++ GTL
Sbjct: 37 NNTIFHRVING---FMIQGGGFEPGM---KQKATKEPIKNEANNGLKNTRGTLAMARTQA 90
Query: 194 PNSVLTKSFL--VSDDVIN 210
P+S + F+ V +D +N
Sbjct: 91 PHSATAQFFINVVDNDFLN 109
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 151 PRAHVHFQLN--VG-KGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVS-- 205
PRA + +N G +G A V N G + G LF NP+ L FLV+
Sbjct: 221 PRAKKYRSINQITGLRGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQ 280
Query: 206 -DDVINAIRS 214
+DV+ IR+
Sbjct: 281 GEDVVAGIRT 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,910,319
Number of Sequences: 62578
Number of extensions: 215710
Number of successful extensions: 372
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 12
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)