Query 037035
Match_columns 231
No_of_seqs 275 out of 1752
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 2.4E-27 5.1E-32 217.8 19.7 164 46-216 200-363 (367)
2 PLN00212 glutelin; Provisional 99.9 1.2E-26 2.7E-31 218.6 18.1 145 68-216 322-469 (493)
3 PF00190 Cupin_1: Cupin; Inte 99.9 4.5E-25 9.7E-30 177.7 12.0 133 64-209 3-143 (144)
4 TIGR03404 bicupin_oxalic bicup 99.9 7.6E-24 1.6E-28 194.6 17.9 147 59-216 37-186 (367)
5 PLN00212 glutelin; Provisional 99.9 2.2E-23 4.8E-28 196.7 20.4 142 71-217 58-251 (493)
6 smart00835 Cupin_1 Cupin. This 99.9 4.7E-21 1E-25 154.6 17.0 135 71-209 7-145 (146)
7 COG2140 Thermophilic glucose-6 99.8 9.9E-19 2.1E-23 147.7 13.2 153 56-220 49-204 (209)
8 PF07883 Cupin_2: Cupin domain 99.4 5.1E-13 1.1E-17 93.7 8.2 70 98-172 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 8.8E-12 1.9E-16 98.4 11.4 85 85-174 34-118 (131)
10 PRK04190 glucose-6-phosphate i 99.4 1.8E-11 3.8E-16 103.4 13.5 88 88-175 62-157 (191)
11 COG0662 {ManC} Mannose-6-phosp 99.3 1.9E-11 4.2E-16 96.6 12.2 80 92-176 34-113 (127)
12 PRK13290 ectC L-ectoine syntha 99.3 3.1E-11 6.7E-16 95.5 11.9 82 92-179 33-114 (125)
13 COG3837 Uncharacterized conser 99.1 3.7E-10 8E-15 91.5 10.2 84 85-175 35-121 (161)
14 TIGR01479 GMP_PMI mannose-1-ph 99.1 1.2E-09 2.6E-14 103.8 12.8 77 93-174 375-451 (468)
15 COG4101 Predicted mannose-6-ph 99.1 1.1E-09 2.4E-14 85.1 9.8 84 93-179 45-129 (142)
16 PRK09943 DNA-binding transcrip 99.1 2.6E-09 5.6E-14 89.3 12.2 76 92-173 105-181 (185)
17 PRK15460 cpsB mannose-1-phosph 99.0 1.8E-09 3.9E-14 102.7 12.1 78 91-173 382-459 (478)
18 PF01050 MannoseP_isomer: Mann 99.0 4.8E-09 1E-13 85.5 11.2 77 92-173 61-137 (151)
19 PRK11171 hypothetical protein; 99.0 8.8E-09 1.9E-13 91.2 13.0 78 91-173 58-136 (266)
20 TIGR03214 ura-cupin putative a 99.0 5.3E-09 1.2E-13 92.3 11.2 74 93-172 178-252 (260)
21 TIGR03214 ura-cupin putative a 98.9 2.3E-08 5E-13 88.2 12.6 77 92-173 56-133 (260)
22 PRK11171 hypothetical protein; 98.8 3.1E-08 6.8E-13 87.7 11.5 75 93-173 183-258 (266)
23 PF06560 GPI: Glucose-6-phosph 98.8 5E-08 1.1E-12 81.8 11.8 86 89-174 45-146 (182)
24 PF02041 Auxin_BP: Auxin bindi 98.8 6E-08 1.3E-12 78.2 10.9 96 87-185 39-139 (167)
25 PRK13264 3-hydroxyanthranilate 98.5 5.7E-07 1.2E-11 74.9 9.2 66 102-171 42-107 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.5 8.5E-07 1.9E-11 72.7 9.8 60 102-163 36-95 (159)
27 PF02311 AraC_binding: AraC-li 98.4 1.9E-06 4.1E-11 66.0 9.1 64 103-172 12-75 (136)
28 PF03079 ARD: ARD/ARD' family; 98.4 3E-06 6.6E-11 69.5 9.9 67 106-173 84-150 (157)
29 PF11699 CENP-C_C: Mif2/CENP-C 98.4 4.1E-06 8.9E-11 62.0 9.4 73 93-170 11-83 (85)
30 TIGR02451 anti_sig_ChrR anti-s 98.3 2.3E-06 5.1E-11 73.6 8.6 74 93-176 126-199 (215)
31 PF12973 Cupin_7: ChrR Cupin-l 98.3 3E-06 6.5E-11 62.9 6.8 66 93-170 23-88 (91)
32 PRK15457 ethanolamine utilizat 98.3 1E-05 2.2E-10 69.9 10.8 70 93-172 156-225 (233)
33 COG1791 Uncharacterized conser 98.2 1.1E-05 2.4E-10 66.5 9.7 71 107-179 88-158 (181)
34 TIGR02272 gentisate_1_2 gentis 98.2 4.1E-06 9E-11 76.4 7.5 77 93-174 80-156 (335)
35 PRK10371 DNA-binding transcrip 98.2 7.6E-06 1.6E-10 73.4 9.2 61 97-163 29-89 (302)
36 PRK10296 DNA-binding transcrip 98.1 3.2E-05 6.9E-10 67.9 10.5 52 104-161 33-84 (278)
37 COG4297 Uncharacterized protei 98.1 1.2E-05 2.7E-10 64.1 6.9 67 104-173 52-119 (163)
38 PRK13501 transcriptional activ 97.9 3.8E-05 8.2E-10 68.0 8.5 56 102-163 26-81 (290)
39 PRK13500 transcriptional activ 97.9 4.8E-05 1E-09 68.4 9.2 55 103-163 57-111 (312)
40 PF05523 FdtA: WxcM-like, C-te 97.9 0.00016 3.5E-09 57.5 11.1 93 75-171 15-109 (131)
41 PF06339 Ectoine_synth: Ectoin 97.9 0.00017 3.6E-09 56.8 10.4 84 90-179 31-114 (126)
42 COG3435 Gentisate 1,2-dioxygen 97.9 2.3E-05 5E-10 70.0 5.9 103 66-174 60-167 (351)
43 PF14499 DUF4437: Domain of un 97.9 2.5E-05 5.4E-10 68.7 6.0 74 91-169 33-106 (251)
44 TIGR02297 HpaA 4-hydroxyphenyl 97.9 5.2E-05 1.1E-09 66.6 7.8 61 104-169 33-93 (287)
45 PRK13502 transcriptional activ 97.8 9.5E-05 2.1E-09 64.9 8.9 56 102-163 26-81 (282)
46 KOG2107 Uncharacterized conser 97.7 5.2E-05 1.1E-09 62.2 5.2 55 106-161 85-139 (179)
47 PRK13503 transcriptional activ 97.7 0.0001 2.3E-09 64.3 7.3 54 103-162 24-77 (278)
48 PF05899 Cupin_3: Protein of u 97.7 0.00015 3.3E-09 52.0 6.3 60 93-159 6-65 (74)
49 TIGR02272 gentisate_1_2 gentis 97.6 0.00027 5.8E-09 64.7 7.8 87 75-171 232-319 (335)
50 COG3257 GlxB Uncharacterized p 97.5 0.0011 2.3E-08 57.1 9.7 75 94-173 61-136 (264)
51 COG1898 RfbC dTDP-4-dehydrorha 97.4 0.0024 5.2E-08 53.3 11.0 67 103-169 54-129 (173)
52 PF06249 EutQ: Ethanolamine ut 97.4 0.00045 9.7E-09 56.4 6.5 69 93-171 76-144 (152)
53 TIGR01221 rmlC dTDP-4-dehydror 97.4 0.0033 7.1E-08 52.6 11.2 69 101-170 51-129 (176)
54 PF06052 3-HAO: 3-hydroxyanthr 97.3 0.0026 5.7E-08 51.6 9.9 62 99-162 38-99 (151)
55 PF00908 dTDP_sugar_isom: dTDP 97.1 0.0043 9.3E-08 51.9 9.3 69 100-168 49-128 (176)
56 COG4766 EutQ Ethanolamine util 97.0 0.0074 1.6E-07 49.2 9.4 69 93-171 99-167 (176)
57 COG3435 Gentisate 1,2-dioxygen 96.7 0.0065 1.4E-07 54.6 7.5 91 73-171 241-331 (351)
58 PF05995 CDO_I: Cysteine dioxy 96.5 0.052 1.1E-06 45.2 11.4 82 93-174 74-164 (175)
59 PF13621 Cupin_8: Cupin-like d 96.5 0.014 3.1E-07 49.6 8.0 69 96-165 132-236 (251)
60 COG3450 Predicted enzyme of th 96.4 0.015 3.2E-07 45.5 6.8 61 93-160 44-104 (116)
61 PF08007 Cupin_4: Cupin superf 95.7 0.069 1.5E-06 48.4 9.1 67 95-162 114-200 (319)
62 PF04209 HgmA: homogentisate 1 95.5 0.057 1.2E-06 51.0 7.8 59 110-173 141-199 (424)
63 PF13759 2OG-FeII_Oxy_5: Putat 95.3 0.065 1.4E-06 40.2 6.3 73 97-169 3-98 (101)
64 PF12852 Cupin_6: Cupin 95.0 0.09 2E-06 43.5 7.0 44 116-162 36-79 (186)
65 PF07385 DUF1498: Protein of u 95.0 0.19 4.1E-06 43.4 9.0 71 98-170 91-184 (225)
66 TIGR02466 conserved hypothetic 94.9 0.14 3.1E-06 43.7 8.0 78 95-173 97-197 (201)
67 PRK05341 homogentisate 1,2-dio 94.7 0.29 6.2E-06 46.4 10.0 57 108-170 147-203 (438)
68 PRK10572 DNA-binding transcrip 94.6 0.15 3.3E-06 44.8 7.8 45 114-163 48-92 (290)
69 TIGR01015 hmgA homogentisate 1 94.5 0.32 7E-06 45.9 9.9 55 108-169 141-195 (429)
70 PF02678 Pirin: Pirin; InterP 94.5 0.12 2.5E-06 39.8 5.9 62 104-169 39-103 (107)
71 PRK12335 tellurite resistance 94.3 0.22 4.8E-06 44.2 8.1 61 102-162 19-82 (287)
72 PLN02658 homogentisate 1,2-dio 94.1 0.44 9.6E-06 45.1 9.9 55 110-170 142-196 (435)
73 COG1741 Pirin-related protein 93.9 0.19 4.2E-06 44.9 6.9 68 98-169 48-119 (276)
74 PF02373 JmjC: JmjC domain, hy 93.9 0.11 2.4E-06 39.0 4.6 29 136-164 79-107 (114)
75 PF05118 Asp_Arg_Hydrox: Aspar 93.6 0.57 1.2E-05 38.4 8.8 82 84-170 68-156 (163)
76 KOG3706 Uncharacterized conser 93.6 0.052 1.1E-06 51.7 2.7 63 97-160 319-403 (629)
77 PRK09685 DNA-binding transcrip 93.2 0.73 1.6E-05 40.6 9.4 66 93-163 44-114 (302)
78 COG3806 ChrR Transcriptional a 93.2 0.63 1.4E-05 39.7 8.4 89 71-174 110-198 (216)
79 COG3822 ABC-type sugar transpo 93.2 0.38 8.2E-06 40.8 6.9 65 98-162 90-177 (225)
80 PF14499 DUF4437: Domain of un 92.6 0.093 2E-06 46.3 2.8 75 94-173 171-245 (251)
81 COG2850 Uncharacterized conser 92.0 0.35 7.7E-06 44.8 5.8 73 86-161 113-202 (383)
82 PRK10579 hypothetical protein; 91.9 2.6 5.6E-05 31.8 9.3 63 100-170 29-91 (94)
83 PF07847 DUF1637: Protein of u 91.8 1 2.2E-05 38.5 8.0 85 88-173 38-142 (200)
84 COG3257 GlxB Uncharacterized p 91.7 1.3 2.7E-05 38.6 8.4 86 74-169 166-252 (264)
85 PF06865 DUF1255: Protein of u 91.7 1.5 3.2E-05 33.1 7.8 67 97-171 26-92 (94)
86 PF05726 Pirin_C: Pirin C-term 91.3 0.94 2E-05 34.2 6.6 68 97-172 2-69 (104)
87 PF06172 Cupin_5: Cupin superf 90.7 3.1 6.6E-05 33.5 9.4 77 93-170 40-123 (139)
88 COG3508 HmgA Homogentisate 1,2 90.5 3.1 6.7E-05 38.6 10.2 65 99-169 129-194 (427)
89 PRK15131 mannose-6-phosphate i 90.0 2.4 5.3E-05 39.7 9.5 59 93-159 320-378 (389)
90 PLN02288 mannose-6-phosphate i 90.0 1.1 2.3E-05 42.1 7.1 58 93-154 333-390 (394)
91 COG5553 Predicted metal-depend 90.0 1.6 3.4E-05 36.2 7.1 70 94-165 73-148 (191)
92 KOG3995 3-hydroxyanthranilate 89.3 0.77 1.7E-05 39.6 5.1 58 103-162 42-99 (279)
93 PF07172 GRP: Glycine rich pro 89.0 0.27 5.8E-06 37.1 1.9 27 1-27 1-28 (95)
94 PF14525 AraC_binding_2: AraC- 88.2 7.3 0.00016 30.6 10.0 66 93-163 33-98 (172)
95 TIGR00218 manA mannose-6-phosp 88.2 4.6 0.0001 36.3 9.7 60 92-159 233-292 (302)
96 PRK00924 5-keto-4-deoxyuronate 88.1 4.5 9.8E-05 36.2 9.3 83 92-176 173-261 (276)
97 PF09313 DUF1971: Domain of un 87.9 3.3 7.2E-05 30.3 7.0 61 103-163 12-75 (82)
98 KOG2757 Mannose-6-phosphate is 87.5 3.2 6.9E-05 38.6 8.2 80 85-172 326-405 (411)
99 PF04962 KduI: KduI/IolB famil 85.7 5.3 0.00011 35.4 8.5 97 76-176 135-247 (261)
100 PF11142 DUF2917: Protein of u 85.3 4 8.7E-05 28.2 6.0 56 100-160 3-58 (63)
101 PF00027 cNMP_binding: Cyclic 84.3 3.6 7.8E-05 28.5 5.7 47 100-148 3-51 (91)
102 PRK09391 fixK transcriptional 84.3 12 0.00026 31.8 9.9 63 92-155 34-97 (230)
103 COG1482 ManA Phosphomannose is 81.2 15 0.00032 33.5 9.6 60 93-160 241-300 (312)
104 PRK13918 CRP/FNR family transc 81.2 7 0.00015 32.0 7.1 54 98-151 8-63 (202)
105 PRK11753 DNA-binding transcrip 80.4 21 0.00045 29.3 9.7 53 97-150 21-74 (211)
106 PLN02868 acyl-CoA thioesterase 76.3 10 0.00022 35.4 7.3 53 97-150 32-84 (413)
107 PF04622 ERG2_Sigma1R: ERG2 an 74.8 8.9 0.00019 33.1 5.9 96 102-208 109-206 (216)
108 KOG2130 Phosphatidylserine-spe 74.7 7.1 0.00015 35.8 5.5 43 138-180 263-305 (407)
109 PRK03606 ureidoglycolate hydro 74.0 22 0.00048 29.3 7.8 77 93-169 55-138 (162)
110 PF04962 KduI: KduI/IolB famil 72.6 45 0.00098 29.5 10.1 82 78-169 14-103 (261)
111 PF04115 Ureidogly_hydro: Urei 71.7 20 0.00043 29.4 7.1 80 93-172 56-144 (165)
112 COG3123 Uncharacterized protei 71.4 16 0.00036 27.0 5.7 42 114-158 40-81 (94)
113 smart00100 cNMP Cyclic nucleot 70.6 27 0.00058 24.6 7.0 53 98-151 19-72 (120)
114 cd00038 CAP_ED effector domain 69.2 24 0.00051 24.8 6.5 53 97-150 18-71 (115)
115 PRK00924 5-keto-4-deoxyuronate 69.2 44 0.00095 30.0 9.2 52 114-170 72-126 (276)
116 TIGR00218 manA mannose-6-phosp 68.8 2.9 6.2E-05 37.6 1.7 20 139-158 152-171 (302)
117 PRK15131 mannose-6-phosphate i 67.8 8.5 0.00018 36.1 4.6 22 139-160 238-259 (389)
118 COG1482 ManA Phosphomannose is 66.0 5.4 0.00012 36.4 2.8 22 139-160 159-180 (312)
119 PHA02984 hypothetical protein; 64.0 47 0.001 29.7 8.2 55 115-171 91-147 (286)
120 PRK10402 DNA-binding transcrip 62.6 24 0.00052 29.7 6.1 53 98-151 33-86 (226)
121 TIGR03697 NtcA_cyano global ni 61.9 20 0.00044 28.8 5.4 36 115-150 11-47 (193)
122 KOG1417 Homogentisate 1,2-diox 61.3 58 0.0013 29.8 8.4 63 107-174 147-209 (446)
123 PRK15186 AraC family transcrip 59.5 38 0.00082 30.4 7.0 46 116-165 39-84 (291)
124 KOG2131 Uncharacterized conser 58.1 11 0.00025 35.1 3.4 64 99-164 202-294 (427)
125 PHA02890 hypothetical protein; 56.8 69 0.0015 28.6 7.9 53 115-171 90-144 (278)
126 PRK13395 ureidoglycolate hydro 56.2 69 0.0015 26.7 7.5 79 93-171 55-141 (171)
127 COG0664 Crp cAMP-binding prote 55.7 46 0.001 26.6 6.5 56 96-152 23-79 (214)
128 PF13640 2OG-FeII_Oxy_3: 2OG-F 55.3 34 0.00073 24.7 5.1 63 99-161 4-86 (100)
129 KOG3416 Predicted nucleic acid 55.0 49 0.0011 26.3 6.0 65 87-160 12-80 (134)
130 PRK11161 fumarate/nitrate redu 54.6 75 0.0016 26.6 7.8 50 100-150 41-91 (235)
131 PRK09392 ftrB transcriptional 53.9 32 0.00069 29.0 5.4 52 98-150 32-83 (236)
132 PRK10202 ebgC cryptic beta-D-g 48.0 79 0.0017 25.4 6.6 50 110-159 60-127 (149)
133 PF04074 DUF386: Domain of unk 46.4 1E+02 0.0022 24.6 7.0 51 109-159 63-134 (153)
134 KOG4281 Uncharacterized conser 46.3 9.8 0.00021 33.0 1.0 43 90-132 71-113 (236)
135 PF14801 GCD14_N: tRNA methylt 45.6 43 0.00093 22.6 3.8 31 127-157 11-41 (54)
136 TIGR00022 uncharacterized prot 45.3 57 0.0012 25.9 5.3 24 109-132 63-86 (142)
137 PF00166 Cpn10: Chaperonin 10 44.6 44 0.00095 24.6 4.2 54 104-160 22-76 (93)
138 PRK14585 pgaD putative PGA bio 42.9 27 0.00059 28.1 3.0 26 191-216 88-113 (137)
139 COG2731 EbgC Beta-galactosidas 42.6 84 0.0018 25.7 5.9 55 107-161 61-135 (154)
140 COG3718 IolB Uncharacterized e 42.3 2.1E+02 0.0046 25.3 8.5 83 78-164 16-103 (270)
141 PRK02290 3-dehydroquinate synt 42.1 82 0.0018 29.2 6.3 69 93-161 266-337 (344)
142 PF13994 PgaD: PgaD-like prote 39.6 37 0.00079 26.9 3.3 25 193-217 101-125 (138)
143 PRK14584 hmsS hemin storage sy 37.8 38 0.00083 27.7 3.2 25 192-216 98-122 (153)
144 KOG0500 Cyclic nucleotide-gate 36.1 68 0.0015 31.2 5.0 33 114-148 347-379 (536)
145 COG1741 Pirin-related protein 36.0 3.2E+02 0.007 24.4 11.1 43 85-129 165-207 (276)
146 COG3718 IolB Uncharacterized e 34.7 1.2E+02 0.0027 26.8 5.9 55 100-154 159-229 (270)
147 PRK00364 groES co-chaperonin G 34.5 1.5E+02 0.0033 22.0 5.8 26 134-159 51-76 (95)
148 PLN02288 mannose-6-phosphate i 33.6 28 0.00061 32.7 2.1 21 140-160 253-273 (394)
149 PHA00672 hypothetical protein 32.3 2.6E+02 0.0057 22.4 7.1 71 92-169 45-115 (152)
150 PLN03192 Voltage-dependent pot 31.6 86 0.0019 32.1 5.3 52 96-148 397-448 (823)
151 PF01959 DHQS: 3-dehydroquinat 31.5 1.5E+02 0.0033 27.6 6.4 69 93-161 276-347 (354)
152 cd00320 cpn10 Chaperonin 10 Kd 31.0 1.6E+02 0.0035 21.7 5.4 27 134-160 50-76 (93)
153 PF13464 DUF4115: Domain of un 30.7 1.9E+02 0.0041 20.1 7.6 47 122-169 5-52 (77)
154 COG0234 GroS Co-chaperonin Gro 30.4 1.9E+02 0.0042 21.8 5.7 31 133-163 50-80 (96)
155 PF06719 AraC_N: AraC-type tra 29.7 2.9E+02 0.0063 22.0 9.5 51 116-171 24-77 (155)
156 PF02787 CPSase_L_D3: Carbamoy 28.9 42 0.00091 26.2 2.0 26 192-217 72-97 (123)
157 KOG2132 Uncharacterized conser 28.5 27 0.00058 32.2 0.9 75 85-160 241-348 (355)
158 PF01987 AIM24: Mitochondrial 28.1 85 0.0018 26.3 4.0 44 117-161 131-174 (215)
159 KOG0498 K+-channel ERG and rel 26.6 1E+02 0.0022 31.5 4.7 47 101-148 447-493 (727)
160 PF06413 Neugrin: Neugrin; In 26.3 68 0.0015 27.9 3.0 28 193-220 30-58 (225)
161 PHA02699 hypothetical protein; 25.4 1.8E+02 0.0039 27.5 5.6 74 97-171 146-223 (466)
162 KOG1633 F-box protein JEMMA an 25.3 80 0.0017 32.5 3.7 75 99-174 141-232 (776)
163 KOG1356 Putative transcription 25.0 27 0.00058 35.9 0.3 24 140-163 801-824 (889)
164 KOG2968 Predicted esterase of 24.9 36 0.00078 35.5 1.2 61 87-148 499-560 (1158)
165 PF10365 DUF2436: Domain of un 23.4 73 0.0016 25.9 2.5 34 27-62 105-140 (161)
166 COG2144 Selenophosphate synthe 23.2 54 0.0012 29.9 1.9 40 110-152 131-170 (324)
167 PF13348 Y_phosphatase3C: Tyro 22.7 80 0.0017 21.4 2.3 23 193-215 44-66 (68)
168 PF13384 HTH_23: Homeodomain-l 21.3 1E+02 0.0022 19.3 2.5 26 192-217 17-42 (50)
169 PF02796 HTH_7: Helix-turn-hel 21.1 1.1E+02 0.0024 19.1 2.6 29 185-215 16-44 (45)
170 PHA02951 Hypothetical protein; 21.0 3.9E+02 0.0085 24.5 6.8 73 97-170 102-179 (337)
171 PTZ00490 Ferredoxin superfamil 20.2 2.1E+02 0.0045 23.1 4.5 34 115-148 25-58 (143)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=2.4e-27 Score=217.76 Aligned_cols=164 Identities=17% Similarity=0.254 Sum_probs=144.4
Q ss_pred CCCCCCCCCcCCCCeeeeccCCCCccccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCE
Q 037035 46 GFPCKPASEVTSDDFFTDFSKDPTTFDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGR 125 (231)
Q Consensus 46 g~~ck~p~~~~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~ 125 (231)
..+-+.+.....+.|+|.+..... ....||+++.+++.+||+++ ++++++++++||++.++|||++++|++||++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred cccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 344555666667779985443333 34678889999999999998 699999999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCCCcceeccchhhcCCCCCCHHHHHhhcCCC
Q 037035 126 VLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVS 205 (231)
Q Consensus 126 ~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~slf~~~~~~p~~vla~af~v~ 205 (231)
+++++++++++.....+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+ +. +|++||+++|+++
T Consensus 277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l-~~---~p~~vl~~~~~~~ 352 (367)
T TIGR03404 277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-AL---TPPQLVAAHLNLD 352 (367)
T ss_pred EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH-hh---CCHHHHHHHhCcC
Confidence 9999998877766788999999999999999999999999999999999999999999887 54 9999999999999
Q ss_pred HHHHHHhHhcC
Q 037035 206 DDVINAIRSAR 216 (231)
Q Consensus 206 ~~~v~~l~~~~ 216 (231)
.+++++|++..
T Consensus 353 ~~~~~~l~~~~ 363 (367)
T TIGR03404 353 DEVIDSLKKEK 363 (367)
T ss_pred HHHHHhccccC
Confidence 99999998653
No 2
>PLN00212 glutelin; Provisional
Probab=99.95 E-value=1.2e-26 Score=218.60 Aligned_cols=145 Identities=21% Similarity=0.363 Sum_probs=130.0
Q ss_pred CCccccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCC-CeEEEEEECCCC
Q 037035 68 PTTFDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-NTFFSKVLTPGM 146 (231)
Q Consensus 68 ~~~~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~L~~GD 146 (231)
.+++++.+|+++.+++.++|+|++++|++.+++|.||+|.+||||++|+|++||++|+++++||+++ ++++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 4567889999999999999999999999999999999999999999999999999999999999877 678899999999
Q ss_pred EEEecCCCeeEEEecCCccEEEEEEEeCCCCcceec--cchhhcCCCCCCHHHHHhhcCCCHHHHHHhHhcC
Q 037035 147 VFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDS--VGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSAR 216 (231)
Q Consensus 147 v~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~--~~slf~~~~~~p~~vla~af~v~~~~v~~l~~~~ 216 (231)
+++||+|++|.... +++...++++..+.++-...+ ..++|++ +|.+||+++|+++++++++||.++
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~ 469 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNR 469 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhcc
Confidence 99999999999876 466788888776555433333 3799997 999999999999999999999985
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.92 E-value=4.5e-25 Score=177.67 Aligned_cols=133 Identities=31% Similarity=0.516 Sum_probs=110.5
Q ss_pred ccCCCCccccCCceEEEccCCCCCCCCC-CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCC-----eE
Q 037035 64 FSKDPTTFDVFKRAVTFGDVSGFPAVNT-QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN-----TF 137 (231)
Q Consensus 64 l~~~~~~~~~~G~~v~~~~~~~~P~L~~-~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----~~ 137 (231)
+..+....+..+|+++.++..++|.+.+ .++.+.++.+.||++.+|||| ++.|+.||++|+++++++++++ +.
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~ 81 (144)
T PF00190_consen 3 LREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRD 81 (144)
T ss_dssp TCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEE
T ss_pred CCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcccccee
Confidence 3344445567888999999999995544 356666677799999999999 9999999999999999999876 45
Q ss_pred EEEE--ECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCCCcceeccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 037035 138 FSKV--LTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVI 209 (231)
Q Consensus 138 ~~~~--L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~slf~~~~~~p~~vla~af~v~~~~v 209 (231)
+..+ +++||+++||+|++||+.|.++++...+.+|++.++... +|++|++++|+++.+++
T Consensus 82 ~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 82 FSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 5566 999999999999999999999888888888887776553 89999999999999876
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.92 E-value=7.6e-24 Score=194.61 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=127.2
Q ss_pred CeeeeccCCCCccccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEE
Q 037035 59 DFFTDFSKDPTTFDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFF 138 (231)
Q Consensus 59 df~f~l~~~~~~~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~ 138 (231)
-|.|.+++..- ..||+++.++..+||++++ +++.++++.||++.++||| ++.|++||++|++++++++++++.+
T Consensus 37 ~~~~~~~~~~~---~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~ 110 (367)
T TIGR03404 37 KWSFSDSHNRL---ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNY 110 (367)
T ss_pred eeeeccccCcc---ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEE
Confidence 35666666542 3688999999999999994 7999999999999999999 5689999999999999999888988
Q ss_pred EEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCC---CcceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHhHhc
Q 037035 139 SKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQN---PGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSA 215 (231)
Q Consensus 139 ~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~---pg~~~~~~slf~~~~~~p~~vla~af~v~~~~v~~l~~~ 215 (231)
.+.|++||+++||+|.+|+++|.+ +++.++.+|++.. +..+.++.++ ++ +|++||+++|+++++++++|++.
T Consensus 111 ~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 111 IDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred EeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 789999999999999999999985 5678888887653 4566777764 76 99999999999999999999875
Q ss_pred C
Q 037035 216 R 216 (231)
Q Consensus 216 ~ 216 (231)
.
T Consensus 186 ~ 186 (367)
T TIGR03404 186 E 186 (367)
T ss_pred C
Confidence 4
No 5
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=2.2e-23 Score=196.66 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=119.6
Q ss_pred cccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-----E-------
Q 037035 71 FDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-----F------- 138 (231)
Q Consensus 71 ~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-----~------- 138 (231)
....||.+..++ .+-+.|+++|+++.|+++.|+|+.+|||| ++++++||++|++.++++.|++.. +
T Consensus 58 i~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~ 135 (493)
T PLN00212 58 VRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEG 135 (493)
T ss_pred hcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccc
Confidence 355677565566 77899999999999999999999999999 899999999999999999865411 1
Q ss_pred -------------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCC--------Ccceecc--------------
Q 037035 139 -------------SKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQN--------PGVSDSV-------------- 183 (231)
Q Consensus 139 -------------~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~--------pg~~~~~-------------- 183 (231)
.+.|++||+++||+|++||++|.|+++++++++++..+ +..+.++
T Consensus 136 ~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~ 215 (493)
T PLN00212 136 QSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSI 215 (493)
T ss_pred cccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccc
Confidence 15899999999999999999999999999998886433 2234443
Q ss_pred -----chhhcCCCCCCHHHHHhhcCCCHHHHHHhHhcCC
Q 037035 184 -----GTLFDTNPSVPNSVLTKSFLVSDDVINAIRSART 217 (231)
Q Consensus 184 -----~slf~~~~~~p~~vla~af~v~~~~v~~l~~~~~ 217 (231)
.++|++ |++++|++|||++.++++||+..+.
T Consensus 216 ~~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~~~d 251 (493)
T PLN00212 216 EQHSGQNIFSG---FSTELLSEALGINAQVAKRLQSQND 251 (493)
T ss_pred cccccCchhhc---CCHHHHHHHHCCCHHHHHHHhcccc
Confidence 359997 9999999999999999999987653
No 6
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=4.7e-21 Score=154.55 Aligned_cols=135 Identities=37% Similarity=0.621 Sum_probs=117.6
Q ss_pred cccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCC-CeEEEEEECCCCEEE
Q 037035 71 FDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-NTFFSKVLTPGMVFL 149 (231)
Q Consensus 71 ~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~L~~GDv~v 149 (231)
.+..||+++.++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++.+.+.+.+ ++.+...+++||+++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 3667888999999999999999999999999999999999998889999999999999987653 355678899999999
Q ss_pred ecCCCeeEEEecCCccEEEEEEEeCCCCcc---eeccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 037035 150 IPRAHVHFQLNVGKGKATFVPIFNSQNPGV---SDSVGTLFDTNPSVPNSVLTKSFLVSDDVI 209 (231)
Q Consensus 150 iP~G~~H~~~N~g~~~a~~i~~~~s~~pg~---~~~~~slf~~~~~~p~~vla~af~v~~~~v 209 (231)
||+|..|++.|.+++++++++ +.+++|.. .....++|++ +++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 999999999999999999985 65566654 2233578887 99999999999999875
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.80 E-value=9.9e-19 Score=147.72 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=131.6
Q ss_pred CCCCeeee-ccCCCCccccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCE--EEEEEeCEEEEEEEc
Q 037035 56 TSDDFFTD-FSKDPTTFDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATE--AGIVLKGRVLVGFVT 132 (231)
Q Consensus 56 ~~~df~f~-l~~~~~~~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~E--i~yVl~G~~~v~~v~ 132 (231)
..+||+|. +...+.. .|+.+.......+|+. ....+.+.||++...||||++.| |.||++|++++.+.+
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 67889994 4443432 3888999998999986 45678999999999999999999 999999999999999
Q ss_pred CCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCCCcceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHh
Q 037035 133 TNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAI 212 (231)
Q Consensus 133 ~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~slf~~~~~~p~~vla~af~v~~~~v~~l 212 (231)
++|+.....+++||+++||++..|+..|+|++|++++.++.........+..++++ ++..+++..|+.+.+..+.+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccccCc
Confidence 99998889999999999999999999999999999999999888888888777744 88999999999888888887
Q ss_pred HhcCCCCC
Q 037035 213 RSARTSNK 220 (231)
Q Consensus 213 ~~~~~~~~ 220 (231)
+-++.+..
T Consensus 197 ~~~~~~~~ 204 (209)
T COG2140 197 RIKFAKPK 204 (209)
T ss_pred cccccccc
Confidence 66655443
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.44 E-value=5.1e-13 Score=93.72 Aligned_cols=70 Identities=31% Similarity=0.463 Sum_probs=63.0
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
+++++||+..++|+|+...|++||++|++.+.+ +++ ...+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999876699999999999984 355 4679999999999999999999999999999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.36 E-value=8.8e-12 Score=98.44 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=72.3
Q ss_pred CCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 037035 85 GFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKG 164 (231)
Q Consensus 85 ~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 164 (231)
-++...+..+.+.++.++||+..+.|+||...+.+||++|++++++. ++ .+++++||++++|+|..|+..|.++.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCC
Confidence 34444566788999999999999999998668999999999999973 44 46799999999999999999999988
Q ss_pred cEEEEEEEeC
Q 037035 165 KATFVPIFNS 174 (231)
Q Consensus 165 ~a~~i~~~~s 174 (231)
+...++++..
T Consensus 109 ~~~~l~v~~~ 118 (131)
T COG1917 109 PMVLLLVFPL 118 (131)
T ss_pred ceeEEEEeee
Confidence 7677776654
No 10
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.35 E-value=1.8e-11 Score=103.44 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCCCCceEEEEEEEcCCcc------cCCccCCCC--CEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEE
Q 037035 88 AVNTQGVSLFRIDLGVGGI------NPPHTHPRA--TEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 88 ~L~~~gis~~~v~l~pgg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 159 (231)
.++..++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+++.....+++||+++||+|..|.+.
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 4455579999999999996 567999754 49999999999999877666555678999999999999999999
Q ss_pred ecCCccEEEEEEEeCC
Q 037035 160 NVGKGKATFVPIFNSQ 175 (231)
Q Consensus 160 N~g~~~a~~i~~~~s~ 175 (231)
|.|+++++++++....
T Consensus 142 N~G~epl~fl~v~p~~ 157 (191)
T PRK04190 142 NTGDEPLVFLACYPAD 157 (191)
T ss_pred ECCCCCEEEEEEEcCC
Confidence 9999999999988643
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.9e-11 Score=96.58 Aligned_cols=80 Identities=23% Similarity=0.186 Sum_probs=71.1
Q ss_pred CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 92 QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
...++.++.+.||+-..+|.|.+..|++||++|++.+.+. ++ ...|++||+++||+|..|.+.|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 4688999999999998888888889999999999999983 55 457999999999999999999999999999988
Q ss_pred EeCCC
Q 037035 172 FNSQN 176 (231)
Q Consensus 172 ~~s~~ 176 (231)
-....
T Consensus 109 ~~p~~ 113 (127)
T COG0662 109 QSPPY 113 (127)
T ss_pred ecCCc
Confidence 75443
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.31 E-value=3.1e-11 Score=95.50 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=69.3
Q ss_pred CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 92 QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
.++++.++.++||+..+.|+|.. .|++||++|++++..++ +++ ...|++||++++|++..|.+.|. ++++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~-~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v 106 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA-TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCV 106 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC-CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence 46889999999999999999965 69999999999998321 255 46799999999999999999997 89999999
Q ss_pred EeCCCCcc
Q 037035 172 FNSQNPGV 179 (231)
Q Consensus 172 ~~s~~pg~ 179 (231)
++..-+|.
T Consensus 107 ~tP~~~~~ 114 (125)
T PRK13290 107 FNPPLTGR 114 (125)
T ss_pred ECCCCCCc
Confidence 88655554
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.14 E-value=3.7e-10 Score=91.54 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCCCCCCceEEEEEEEcCCcc-cCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCC--CeeEEEec
Q 037035 85 GFPAVNTQGVSLFRIDLGVGGI-NPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRA--HVHFQLNV 161 (231)
Q Consensus 85 ~~P~L~~~gis~~~v~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G--~~H~~~N~ 161 (231)
.+-+|+ .+.+....++||+. ..+|||...+|++||++|++.+.+ ++. ...|++||++-||+| ..|.+.|.
T Consensus 35 ~~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeec
Confidence 344566 56666778999995 689999999999999999999886 333 357999999999999 99999999
Q ss_pred CCccEEEEEEEeCC
Q 037035 162 GKGKATFVPIFNSQ 175 (231)
Q Consensus 162 g~~~a~~i~~~~s~ 175 (231)
++..++++++-+..
T Consensus 108 s~~~~~yL~vG~r~ 121 (161)
T COG3837 108 SDVILRYLEVGTRE 121 (161)
T ss_pred CCceEEEEEecccc
Confidence 99999999876543
No 14
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.09 E-value=1.2e-09 Score=103.79 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=70.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
++.+.+++++||+..++|+|+...|.+||++|++++.+ +++ ...|++||+++||+|..|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 68899999999999899999888999999999999987 456 4579999999999999999999999999999987
Q ss_pred eC
Q 037035 173 NS 174 (231)
Q Consensus 173 ~s 174 (231)
..
T Consensus 450 ~~ 451 (468)
T TIGR01479 450 SG 451 (468)
T ss_pred cC
Confidence 53
No 15
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.1e-09 Score=85.07 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=74.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
+|-+-.++++||+-...|-|.+-+..+||++|+..+++. +++ +..++++||+|+||+|++|.-.|.+++++..+.+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 788899999999999999998888899999999999984 343 4568999999999999999999999999999988
Q ss_pred EeCCCCcc
Q 037035 172 FNSQNPGV 179 (231)
Q Consensus 172 ~~s~~pg~ 179 (231)
.+..|+..
T Consensus 122 RsDp~~~E 129 (142)
T COG4101 122 RSDPNPQE 129 (142)
T ss_pred ccCCCCCc
Confidence 87666643
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.06 E-value=2.6e-09 Score=89.28 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=64.2
Q ss_pred CceEEEEEEEcCCcccC-CccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 92 QGVSLFRIDLGVGGINP-PHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
..+.+....++||+... .|+| ...|++||++|++.+.+ +++ .+.|++||.++||.+.+|.+.|.+++++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred CeeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEE---CCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 35677788899999654 5667 46999999999999987 355 45799999999999999999999999999998
Q ss_pred EEe
Q 037035 171 IFN 173 (231)
Q Consensus 171 ~~~ 173 (231)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 764
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=102.73 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=69.4
Q ss_pred CCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 91 TQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 91 ~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
+.++.+.++++.||+-...|+|....|.+||++|++++.+ +++ ...|++||.++||+|.+|.+.|.|++++++|+
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 3468899999999998777888778899999999999997 456 46799999999999999999999999999999
Q ss_pred EEe
Q 037035 171 IFN 173 (231)
Q Consensus 171 ~~~ 173 (231)
+..
T Consensus 457 V~~ 459 (478)
T PRK15460 457 VRS 459 (478)
T ss_pred EEc
Confidence 864
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.00 E-value=4.8e-09 Score=85.55 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=69.3
Q ss_pred CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 92 QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
.+..+-++.+.||.....|.|....|..+|++|++.+.+ +++ ...+++||+++||+|..|.+.|.|+.+++++-+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 367889999999999999999888999999999999987 455 457999999999999999999999999999976
Q ss_pred Ee
Q 037035 172 FN 173 (231)
Q Consensus 172 ~~ 173 (231)
-.
T Consensus 136 q~ 137 (151)
T PF01050_consen 136 QT 137 (151)
T ss_pred ec
Confidence 43
No 19
>PRK11171 hypothetical protein; Provisional
Probab=98.98 E-value=8.8e-09 Score=91.16 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCceEEEEEEEcCCcccCCccCC-CCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 91 TQGVSLFRIDLGVGGINPPHTHP-RATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 91 ~~gis~~~v~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
+.++.+.++++.||+-...|+|+ ...|++||++|++++.+ +++ ...|++||.+++|++..|.+.|.|+++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 45789999999999987777775 56899999999999987 355 4679999999999999999999999999999
Q ss_pred EEEe
Q 037035 170 PIFN 173 (231)
Q Consensus 170 ~~~~ 173 (231)
++..
T Consensus 133 ~v~~ 136 (266)
T PRK11171 133 WIRK 136 (266)
T ss_pred EEEc
Confidence 8763
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.97 E-value=5.3e-09 Score=92.31 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=63.9
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPP-HTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 93 gis~~~v~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
++.+.+++++||+..+. |.| .-+|.+||++|++.+.+ +++ ...+++||++++|++.+||++|.|++++++|.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H-~~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETH-VMEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCcccc-cceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 67888899999999995 556 46789999999999876 566 457999999999999999999999999999854
Q ss_pred E
Q 037035 172 F 172 (231)
Q Consensus 172 ~ 172 (231)
-
T Consensus 252 k 252 (260)
T TIGR03214 252 K 252 (260)
T ss_pred c
Confidence 3
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.90 E-value=2.3e-08 Score=88.24 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=65.9
Q ss_pred CceEEEEEEEcCCccc-CCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 92 QGVSLFRIDLGVGGIN-PPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
..+.+..++++||+-. .+|+|+...|++||++|++.+.+ +++ ...|++||.+++|+|..|.+.|.+++++++++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGE--THELREGGYAYLPPGSKWTLANAQAEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 4689999999998754 46667666899999999999986 355 35799999999999999999999999999998
Q ss_pred EEe
Q 037035 171 IFN 173 (231)
Q Consensus 171 ~~~ 173 (231)
+-.
T Consensus 131 v~k 133 (260)
T TIGR03214 131 YKK 133 (260)
T ss_pred EEe
Confidence 764
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.84 E-value=3.1e-08 Score=87.67 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=65.5
Q ss_pred ceEEEEEEEcCCcccCCc-cCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPH-THPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH-~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
++.+.+++|+||+..+.| .| ...|.+||++|++++.+ +++ +..|++||++.+|.+.+|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 468999999999998874 56 67899999999999986 466 457999999999999999999999999999965
Q ss_pred Ee
Q 037035 172 FN 173 (231)
Q Consensus 172 ~~ 173 (231)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 44
No 23
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.83 E-value=5e-08 Score=81.80 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=58.5
Q ss_pred CCCCceEEEEEEEcCCcc------cCCccCCC------CCEEEEEEeCEEEEEEEcCCC----eEEEEEECCCCEEEecC
Q 037035 89 VNTQGVSLFRIDLGVGGI------NPPHTHPR------ATEAGIVLKGRVLVGFVTTNN----TFFSKVLTPGMVFLIPR 152 (231)
Q Consensus 89 L~~~gis~~~v~l~pgg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~~----~~~~~~L~~GDv~viP~ 152 (231)
+...++......+.||-+ ..=|+|+. ..|+.+|++|++.+-+-+.++ +.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 444568888888999763 45699988 899999999999999998887 67778999999999999
Q ss_pred CCeeEEEecCCccEEEEEEEeC
Q 037035 153 AHVHFQLNVGKGKATFVPIFNS 174 (231)
Q Consensus 153 G~~H~~~N~g~~~a~~i~~~~s 174 (231)
+..|...|+|++++++.....+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999887764
No 24
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.81 E-value=6e-08 Score=78.18 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCC----CeEEEEEECCCCEEEecCCCeeEEEecC
Q 037035 87 PAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN----NTFFSKVLTPGMVFLIPRAHVHFQLNVG 162 (231)
Q Consensus 87 P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~~~~~~~L~~GDv~viP~G~~H~~~N~g 162 (231)
-+++ .+.+.+-++.||.-.|+|.| ..+|+++|++|+++..+.... |+.....+-+++.|.||.+..|...|++
T Consensus 39 hGmk--evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMK--EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--S--SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCce--eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 4455 57999999999999999999 579999999999999887653 5666778999999999999999999999
Q ss_pred C-ccEEEEEEEeCCCCcceeccch
Q 037035 163 K-GKATFVPIFNSQNPGVSDSVGT 185 (231)
Q Consensus 163 ~-~~a~~i~~~~s~~pg~~~~~~s 185 (231)
+ +++.++++++..--..+...+|
T Consensus 116 e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 116 EHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp SSS-EEEEEEEESSS--EEEESST
T ss_pred CCcceEEEEEecCCCeEEEEeccc
Confidence 4 8899887775432233333333
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.53 E-value=5.7e-07 Score=74.87 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=53.2
Q ss_pred cCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 102 GVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 102 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
.||.-...|+|+ ..|++|+++|+.++.+++ +|+.....|++||++++|+|+.|..+.. ++.+.+.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 566677889996 699999999999999987 4554567899999999999999999773 44444443
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.51 E-value=8.5e-07 Score=72.73 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=48.0
Q ss_pred cCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 102 GVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 102 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
.||.-...|.|+ ..|++|+++|+..+.+.+. ++.....|++||++++|+|+.|......+
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 344445577775 7999999999999998763 54446789999999999999999987543
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.42 E-value=1.9e-06 Score=65.98 Aligned_cols=64 Identities=27% Similarity=0.287 Sum_probs=46.0
Q ss_pred CCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 103 VGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 103 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
++-..++|+|+ .-|++||++|++.+.+ +++ ...+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44567899995 6899999999999976 466 3579999999999999999988876677766553
No 28
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.38 E-value=3e-06 Score=69.55 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=50.7
Q ss_pred ccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEe
Q 037035 106 INPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFN 173 (231)
Q Consensus 106 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 173 (231)
+...|.|. ..|+-|+++|+++..+.+.+++.....+++||++++|+|..||+.-..+...+++=.|.
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 45789995 58999999999999999877776667899999999999999999765555677766664
No 29
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.37 E-value=4.1e-06 Score=61.98 Aligned_cols=73 Identities=30% Similarity=0.352 Sum_probs=54.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
.++...++|+||+.-++-.--+..-++||++|.+++.+ ++. ...+.+||++.||+|-.-.+.|.++++++++-
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti---~~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI---HET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE---cCc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 57788999999998765433366889999999999998 344 35799999999999999999999999998874
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.34 E-value=2.3e-06 Score=73.57 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=63.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
+..+..+++.||+.++.|.| ...|+.+|++|+.. +..+ .+.+||.+..|.|..|...+.++++++.+++.
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de~g-----~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DETG-----VYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cCCC-----ccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 45778899999999999999 67899999999953 3333 48999999999999999999988899999988
Q ss_pred eCCC
Q 037035 173 NSQN 176 (231)
Q Consensus 173 ~s~~ 176 (231)
+.+-
T Consensus 196 dapl 199 (215)
T TIGR02451 196 DAPL 199 (215)
T ss_pred cCCc
Confidence 7553
No 31
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.27 E-value=3e-06 Score=62.90 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=51.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
+..+..+.++||+..+.|.|+ ..|.+|||+|+...+ ++ .+.+||.++.|+|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d~----~~-----~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSDG----DG-----RYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEET----TC-----EEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEEC----Cc-----cCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 678889999999999999995 578889999998732 33 37999999999999999984 55566553
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.26 E-value=1e-05 Score=69.93 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=51.8
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
.|++....+... ..+||.+..|+.||++|++++.+ +++ .+.+++||+++||+|..|.+...+ .++++.+.
T Consensus 156 ~m~aGf~~~~~~---sf~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWENA---FFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEecC---ccceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 466666666652 23477788999999999999997 466 457999999999999995554433 55555544
No 33
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.22 E-value=1.1e-05 Score=66.49 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=59.0
Q ss_pred cCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCCCcc
Q 037035 107 NPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGV 179 (231)
Q Consensus 107 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~ 179 (231)
..-|.| ...|+-|++.|++...+..++|+.+...+.+||.+.+|+|.-||+--..+-..+++=.|+ ..+|-
T Consensus 88 ~~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gW 158 (181)
T COG1791 88 LQEHLH-TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGW 158 (181)
T ss_pred HHHhcc-CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCc
Confidence 457999 569999999999999999999999999999999999999999999765555666666665 33443
No 34
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.20 E-value=4.1e-06 Score=76.45 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=64.9
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
.|.+..-.+.||...++|.| .+.-+.+|++|++....| +++ ....++||+|++|.+..|...|.|++++.++.++
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 46667788999999999999 578999999999965555 466 4579999999999999999999999998887666
Q ss_pred eC
Q 037035 173 NS 174 (231)
Q Consensus 173 ~s 174 (231)
+.
T Consensus 155 D~ 156 (335)
T TIGR02272 155 DI 156 (335)
T ss_pred CH
Confidence 53
No 35
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.20 E-value=7.6e-06 Score=73.43 Aligned_cols=61 Identities=18% Similarity=0.081 Sum_probs=49.6
Q ss_pred EEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 97 FRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
....-.|..|.++||| +.-|++|+++|++.+.+ +|+ ...+++||+++|+.|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence 3445567788999999 56899999999998776 466 3579999999999999998765444
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.08 E-value=3.2e-05 Score=67.89 Aligned_cols=52 Identities=25% Similarity=0.301 Sum_probs=43.4
Q ss_pred CcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 037035 104 GGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNV 161 (231)
Q Consensus 104 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 161 (231)
+...++||| +..|++||++|++.+.+ +++. ..+++||+++||+|..|.....
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~~--~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGKR--VLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CCEE--EEECCCcEEEeCCCCccceeee
Confidence 335689999 57899999999999887 4663 5799999999999999976543
No 37
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.07 E-value=1.2e-05 Score=64.08 Aligned_cols=67 Identities=25% Similarity=0.289 Sum_probs=54.4
Q ss_pred Cccc-CCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEe
Q 037035 104 GGIN-PPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFN 173 (231)
Q Consensus 104 gg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 173 (231)
|++. --|||..+.|++.|++|+..+.+..++|+. ..+++||++++|+|+-|.-.. .+-+..++..+.
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~e--l~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaYp 119 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQE--LEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAYP 119 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCce--eeecCCCEEEEecCccccccc-CCCCeEEEcccC
Confidence 4443 468999999999999999999998888874 469999999999999998743 456666666664
No 38
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.95 E-value=3.8e-05 Score=67.96 Aligned_cols=56 Identities=30% Similarity=0.223 Sum_probs=45.6
Q ss_pred cCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 102 GVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 102 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
.+..-.++||| +..|++||++|++++.+ +++ ...+++||+++||+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTH-QFCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCccccc-cceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence 33344679999 57899999999999987 456 4579999999999999999876443
No 39
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.94 E-value=4.8e-05 Score=68.39 Aligned_cols=55 Identities=27% Similarity=0.283 Sum_probs=45.4
Q ss_pred CCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 103 VGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 103 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
|....++||| +..|++||.+|++...+ +++ ...+++||+++||+|.+|.+....+
T Consensus 57 ~~~~~~~H~H-~~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTH-DFCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCcccc-ceEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence 3345689999 57899999999999876 456 4579999999999999999876544
No 40
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.93 E-value=0.00016 Score=57.48 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=51.7
Q ss_pred CceEEEccCCCCCCCCCCceEEEEEEEcCCc-ccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCC-CEEEecC
Q 037035 75 KRAVTFGDVSGFPAVNTQGVSLFRIDLGVGG-INPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPG-MVFLIPR 152 (231)
Q Consensus 75 G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~G-Dv~viP~ 152 (231)
.|.++.+...+-.... --.++.+.-.|++ .+..|+|....|+++|++|+..+.+-+...+ ....|..- ..+.||+
T Consensus 15 RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ipp 91 (131)
T PF05523_consen 15 RGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPP 91 (131)
T ss_dssp TEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-T
T ss_pred CCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECC
Confidence 4456655544322222 1234444334444 5999999999999999999999998764433 45667655 4999999
Q ss_pred CCeeEEEecCCccEEEEEE
Q 037035 153 AHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 153 G~~H~~~N~g~~~a~~i~~ 171 (231)
|.+|.+.|.++. +++++.
T Consensus 92 g~w~~~~~~s~~-svlLv~ 109 (131)
T PF05523_consen 92 GVWHGIKNFSED-SVLLVL 109 (131)
T ss_dssp T-EEEEE---TT--EEEEE
T ss_pred chhhHhhccCCC-cEEEEE
Confidence 999999998766 666653
No 41
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.91 E-value=0.00017 Score=56.81 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=71.7
Q ss_pred CCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 90 NTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 90 ~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
.+.|+|+-.-.+.+|.-...||- +.-|-.|+++|++++.-.+ +|+. ..+++|.+++..+--.|+..... +++++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~~--~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGEV--HPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCcE--EEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 36789999999999999999986 5689999999999998765 4664 57999999999999999998754 89999
Q ss_pred EEEeCCCCcc
Q 037035 170 PIFNSQNPGV 179 (231)
Q Consensus 170 ~~~~s~~pg~ 179 (231)
|+||.+--|.
T Consensus 105 CVFnPpltG~ 114 (126)
T PF06339_consen 105 CVFNPPLTGR 114 (126)
T ss_pred EEcCCCCcCc
Confidence 9998654443
No 42
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.89 E-value=2.3e-05 Score=70.01 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCCccccCCceEEEccCCCCCCCCCCc-----eEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEE
Q 037035 66 KDPTTFDVFKRAVTFGDVSGFPAVNTQG-----VSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSK 140 (231)
Q Consensus 66 ~~~~~~~~~G~~v~~~~~~~~P~L~~~g-----is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~ 140 (231)
..+......++ ++.+-..+.|+|++.. +-+..--|.||-..+.|.|. ..-+-+|++|++-..+|+ |+ ..
T Consensus 60 ~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~Vd--Ge--r~ 133 (351)
T COG3435 60 RSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVD--GE--RT 133 (351)
T ss_pred HhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeec--Cc--ee
Confidence 33443333333 5667778889998763 11334567899999999994 578999999999888886 54 34
Q ss_pred EECCCCEEEecCCCeeEEEecCCccEEEEEEEeC
Q 037035 141 VLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNS 174 (231)
Q Consensus 141 ~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s 174 (231)
.+++||.++.|++..|.--|.|.+|++++-.++.
T Consensus 134 ~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 134 PMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred eccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 6999999999999999999999999999977653
No 43
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.88 E-value=2.5e-05 Score=68.65 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 91 TQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 91 ~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
..|-+..++.+++|-..|||+| ++++-+|||+|.+..+ +.+....-|.+|..+..|+|..|+....+++.+.++
T Consensus 33 ~~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 33 KDGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TTS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred cCCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 3478899999999999999999 6899999999987653 223334569999999999999999977776656555
No 44
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.86 E-value=5.2e-05 Score=66.59 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=47.5
Q ss_pred CcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 104 GGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 104 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
+...++|||.+.-|++|+.+|++.+.+ +++ ...+++||++++|+|..|.+...++....++
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 345789999546899999999998876 455 4579999999999999999876554433333
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.83 E-value=9.5e-05 Score=64.93 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=45.5
Q ss_pred cCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 102 GVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 102 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
.|+-..++||| +..|++||.+|++++.+ +++ ...+++||+++||+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h-~~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTH-EFCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCcccc-ceEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence 34445789999 57899999999999886 456 3579999999999999999865443
No 46
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.73 E-value=5.2e-05 Score=62.21 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=48.8
Q ss_pred ccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 037035 106 INPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNV 161 (231)
Q Consensus 106 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 161 (231)
+...|.|++ .||-||++|+++.-+-+.+++....-+++||++++|+|.-|.+--+
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt 139 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTT 139 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecC
Confidence 467999975 8999999999999998888888788899999999999999998544
No 47
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.71 E-value=0.0001 Score=64.30 Aligned_cols=54 Identities=24% Similarity=0.269 Sum_probs=44.5
Q ss_pred CCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 037035 103 VGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVG 162 (231)
Q Consensus 103 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 162 (231)
+....++||| +..|++||++|++++.+ +++ ...+++||++++|+|..|.+....
T Consensus 24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHH-DFHEIVIVEHGTGIHVF---NGQ--PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred cccccccccc-CceeEEEEecCceeeEe---cCC--cccccCCcEEEECCCccchhhhcc
Confidence 4456789999 57899999999999887 344 357999999999999999876543
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.67 E-value=0.00015 Score=51.96 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=43.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 159 (231)
.++.......||... .++. ..|++||++|++++.. .+|+. .++++||++++|+|..-.+.
T Consensus 6 ~~~~g~w~~~pg~~~-~~~~--~~E~~~vleG~v~it~--~~G~~--~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 6 VFSAGVWECTPGKFP-WPYP--EDEFFYVLEGEVTITD--EDGET--VTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp SEEEEEEEEECEEEE-EEES--SEEEEEEEEEEEEEEE--TTTEE--EEEETTEEEEE-TTEEEEEE
T ss_pred CEEEEEEEECCceeE-eeCC--CCEEEEEEEeEEEEEE--CCCCE--EEEcCCcEEEECCCCEEEEE
Confidence 356666777887633 3344 3899999999999874 35763 67999999999999865553
No 49
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.56 E-value=0.00027 Score=64.68 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=64.0
Q ss_pred CceEEEccCCCCCC-CCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCC
Q 037035 75 KRAVTFGDVSGFPA-VNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRA 153 (231)
Q Consensus 75 G~~v~~~~~~~~P~-L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G 153 (231)
|..+..++..+-+. ..+ |+.....+++|....+|.| ....+++|++|+++..+ +++ ..+.++||+|++|..
T Consensus 232 g~~l~y~NP~TG~~~~pt--i~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~~--~~~W~~gD~f~vPsW 303 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPT--IGAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GDA--VFRFSPKDVFVVPSW 303 (335)
T ss_pred eEEEEEeCCCCCCCcchh--HHHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CCE--EEEecCCCEEEECCC
Confidence 44566677655553 343 3444567889999999999 46899999999999987 355 357999999999999
Q ss_pred CeeEEEecCCccEEEEEE
Q 037035 154 HVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 154 ~~H~~~N~g~~~a~~i~~ 171 (231)
..|...|. ++++++.+
T Consensus 304 ~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 304 HPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CcEecccC--CCeEEEEe
Confidence 88877664 45655543
No 50
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.47 E-value=0.0011 Score=57.08 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=63.4
Q ss_pred eEEEEEEEcCCc-ccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 94 VSLFRIDLGVGG-INPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 94 is~~~v~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
++-+.+++.|+| .-.|-.-+++.-++||++|++.+.+ +|+ +..|++|+..++|+|..|...|...+++++..+-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCe--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 455678998877 6667777889999999999999987 466 4579999999999999999999999998888765
Q ss_pred e
Q 037035 173 N 173 (231)
Q Consensus 173 ~ 173 (231)
.
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 4
No 51
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0024 Score=53.28 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=55.2
Q ss_pred CCcccCCccCCCC-CEEEEEEeCEEEEEEEcCC------CeEEEEEECCC--CEEEecCCCeeEEEecCCccEEEE
Q 037035 103 VGGINPPHTHPRA-TEAGIVLKGRVLVGFVTTN------NTFFSKVLTPG--MVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 103 pgg~~~pH~Hp~a-~Ei~yVl~G~~~v~~v~~~------~~~~~~~L~~G--Dv~viP~G~~H~~~N~g~~~a~~i 169 (231)
||-++..|||..- .+++.|++|++....+|-. ++.....+.+- ..+.||+|.+|-++|.+++..+++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence 8889999999777 8999999999999998743 35555667655 799999999999999998864333
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.41 E-value=0.00045 Score=56.41 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=46.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
.|++..+++... ..-|.-...|+.||++|++.+.. +|+. ...++||+++||+|.--.+... ..++++.+
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~~--~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQT--VTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTEE--EEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCEE--EEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 355566666653 34577788999999999998874 4774 5699999999999987666433 33444443
No 53
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.35 E-value=0.0033 Score=52.59 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred EcCCcccCCccCC--CCCEEEEEEeCEEEEEEEcCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEE
Q 037035 101 LGVGGINPPHTHP--RATEAGIVLKGRVLVGFVTTN------NTFFSKVLTP--GMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 101 l~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~L~~--GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
-.+|.++.+|+|. .-.+++.|++|++..-++|-. |+.....|.+ +..++||+|..|.+...+++ +.++-
T Consensus 51 S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y 129 (176)
T TIGR01221 51 SYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLY 129 (176)
T ss_pred ecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEE
Confidence 3678899999983 358999999999999999853 5666677876 56999999999999998765 44443
No 54
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.32 E-value=0.0026 Score=51.59 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=42.4
Q ss_pred EEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 037035 99 IDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVG 162 (231)
Q Consensus 99 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 162 (231)
+.=.|+.-.--|..+ ..|++|-++|...+.+++ +|+.....+++||++..|++++|.-+-..
T Consensus 38 vVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 38 VVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp EEESSB--SSEEE-S-S-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred EEcCCCCCCccccCC-cceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 333455555677774 689999999999999987 56767889999999999999999987754
No 55
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=97.10 E-value=0.0043 Score=51.89 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=53.0
Q ss_pred EEcCCcccCCccCCCC---CEEEEEEeCEEEEEEEcCC------CeEEEEEECCCC--EEEecCCCeeEEEecCCccEEE
Q 037035 100 DLGVGGINPPHTHPRA---TEAGIVLKGRVLVGFVTTN------NTFFSKVLTPGM--VFLIPRAHVHFQLNVGKGKATF 168 (231)
Q Consensus 100 ~l~pgg~~~pH~Hp~a---~Ei~yVl~G~~~v~~v~~~------~~~~~~~L~~GD--v~viP~G~~H~~~N~g~~~a~~ 168 (231)
.-.+|.++.+|+|..- ..++.|++|++...++|-. |+.....|.+++ .++||+|..|.+...+++..+.
T Consensus 49 ~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~ 128 (176)
T PF00908_consen 49 VSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVL 128 (176)
T ss_dssp EEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEE
T ss_pred EccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEE
Confidence 3345888999999654 6899999999999999832 577778887775 8999999999999997663333
No 56
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0074 Score=49.18 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=49.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
.+++....+++ ...+ |--+-.|+-||++|++.+.. +|+ +...++||+++||+|.---+--.|+ ++++-+
T Consensus 99 ~l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge--a~flyv 167 (176)
T COG4766 99 RLGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYV 167 (176)
T ss_pred ccccceeeecc-ccCc--ceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce--EEEEEE
Confidence 45566666666 3222 44467899999999999876 355 3468999999999998777755544 555543
No 57
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.69 E-value=0.0065 Score=54.64 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=66.3
Q ss_pred cCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecC
Q 037035 73 VFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPR 152 (231)
Q Consensus 73 ~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~ 152 (231)
-.|..++.++..+=--. .--|.+..-.|+||-...+|.|.+ +-+.-|.+|++++.+ +|+. +...+||+|++|.
T Consensus 241 ~dG~~~ryvNP~TGg~~-mptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~r--f~~~~~D~fvVPs 313 (351)
T COG3435 241 FDGYKMRYVNPVTGGYA-MPTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGER--FDWSAGDIFVVPS 313 (351)
T ss_pred CCcceEEEecCCCCCCc-CchHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCEE--eeccCCCEEEccC
Confidence 34666666664321111 112455556778888889999965 578889999999987 4664 5699999999999
Q ss_pred CCeeEEEecCCccEEEEEE
Q 037035 153 AHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 153 G~~H~~~N~g~~~a~~i~~ 171 (231)
=..|...|. .++++++++
T Consensus 314 W~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 314 WAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred cceeecccC-CcceEEEec
Confidence 999999885 778888764
No 58
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.50 E-value=0.052 Score=45.15 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=56.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCe--------EEEEEECCCCEEEecCCCeeEEEecC-C
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNT--------FFSKVLTPGMVFLIPRAHVHFQLNVG-K 163 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~--------~~~~~L~~GDv~viP~G~~H~~~N~g-~ 163 (231)
.+.+..+...||...+.|=|..+.=++.|++|+++-......+. .....+..|..++++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 57788899999999999999777778899999988776533211 12235678888888999999999886 7
Q ss_pred ccEEEEEEEeC
Q 037035 164 GKATFVPIFNS 174 (231)
Q Consensus 164 ~~a~~i~~~~s 174 (231)
++++-+=++..
T Consensus 154 ~~avSLHvYsp 164 (175)
T PF05995_consen 154 EPAVSLHVYSP 164 (175)
T ss_dssp S-EEEEEEEES
T ss_pred CCEEEEEEcCC
Confidence 77777666653
No 59
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.45 E-value=0.014 Score=49.60 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=48.4
Q ss_pred EEEEEEcC-CcccCCccCCCCCEEEEEEeCEEEEEEEcCCC-----------------------------------eEEE
Q 037035 96 LFRIDLGV-GGINPPHTHPRATEAGIVLKGRVLVGFVTTNN-----------------------------------TFFS 139 (231)
Q Consensus 96 ~~~v~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----------------------------------~~~~ 139 (231)
...+-+.+ |...+.|+.+ ..-++.+++|+=++.+..|.. +.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34455555 6678999986 567899999999998887641 2346
Q ss_pred EEECCCCEEEecCCCeeEEEecCCcc
Q 037035 140 KVLTPGMVFLIPRAHVHFQLNVGKGK 165 (231)
Q Consensus 140 ~~L~~GDv~viP~G~~H~~~N~g~~~ 165 (231)
.+|++||+++||+|..|...|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 79999999999999999999984343
No 60
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.37 E-value=0.015 Score=45.51 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=44.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
.+......-.||.. +++-...|+.++|+|++.+. ..+|+. ..+++||+++||+|..=-+.-
T Consensus 44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T--~d~Ge~--v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVT--PDGGEP--VEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEE--CCCCeE--EEEcCCCEEEECCCCeEEEEE
Confidence 35555666677664 34445589999999998875 334664 579999999999998766543
No 61
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.71 E-value=0.069 Score=48.43 Aligned_cols=67 Identities=22% Similarity=0.192 Sum_probs=43.5
Q ss_pred EEEEEEEcCCc--ccCCccCCCCCEEEEEEeCEEEEEEEcCCC------------------eEEEEEECCCCEEEecCCC
Q 037035 95 SLFRIDLGVGG--INPPHTHPRATEAGIVLKGRVLVGFVTTNN------------------TFFSKVLTPGMVFLIPRAH 154 (231)
Q Consensus 95 s~~~v~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~------------------~~~~~~L~~GDv~viP~G~ 154 (231)
....+.+.|+| -..|||=. ..-+++=++|+=+..+-.+.. .....+|++||++|+|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34556788888 78899863 456666778876666655210 1235789999999999999
Q ss_pred eeEEEecC
Q 037035 155 VHFQLNVG 162 (231)
Q Consensus 155 ~H~~~N~g 162 (231)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999987
No 62
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.48 E-value=0.057 Score=50.97 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=38.4
Q ss_pred ccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEe
Q 037035 110 HTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFN 173 (231)
Q Consensus 110 H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 173 (231)
-++.+++|++++.+|++++.- +-|+ ..+++||+++||+|+.+.+.=.|.....++..+.
T Consensus 141 f~NaDGD~Li~~q~G~l~l~T--e~G~---L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 141 FRNADGDELIFPQQGSLRLET--EFGR---LDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp EEESSEEEEEEEEES-EEEEE--TTEE---EEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred eEcCCCCEEEEEEECCEEEEe--cCee---EEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 357799999999999998764 3365 3599999999999999998665433333333443
No 63
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.31 E-value=0.065 Score=40.19 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=36.3
Q ss_pred EEEEEcCCcccCCccCCCCC--EEEEEE--eCEEEEEEEcCCC------------------eEEEEEECCCCEEEecCCC
Q 037035 97 FRIDLGVGGINPPHTHPRAT--EAGIVL--KGRVLVGFVTTNN------------------TFFSKVLTPGMVFLIPRAH 154 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~v~~~~------------------~~~~~~L~~GDv~viP~G~ 154 (231)
.....++|+...+|.|+++. -++||- ++...+.+.+++. ..+....++||+++||.-+
T Consensus 3 W~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l 82 (101)
T PF13759_consen 3 WANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWL 82 (101)
T ss_dssp EEEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTS
T ss_pred eEEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCC
Confidence 34567899999999998753 233332 2333344544421 2345678999999999999
Q ss_pred eeEEEe-cCCccEEEE
Q 037035 155 VHFQLN-VGKGKATFV 169 (231)
Q Consensus 155 ~H~~~N-~g~~~a~~i 169 (231)
.|...- .++++-+.|
T Consensus 83 ~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 83 WHGVPPNNSDEERISI 98 (101)
T ss_dssp EEEE----SSS-EEEE
T ss_pred EEeccCcCCCCCEEEE
Confidence 999854 444444333
No 64
>PF12852 Cupin_6: Cupin
Probab=95.05 E-value=0.09 Score=43.45 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=34.9
Q ss_pred CEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 037035 116 TEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVG 162 (231)
Q Consensus 116 ~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 162 (231)
.-+.+|++|+..+.+-+ .+. ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 56888999999998632 133 467999999999999999995433
No 65
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.04 E-value=0.19 Score=43.45 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=44.6
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEe-CEEEEEEEcCC--C--------------eEE------EEEECCCCEEEecCCC
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLK-GRVLVGFVTTN--N--------------TFF------SKVLTPGMVFLIPRAH 154 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~--~--------------~~~------~~~L~~GDv~viP~G~ 154 (231)
.+.+.+|...|.|+|..-.|=++.-- |.+.+.+...+ + ..+ ..+|++|+.+-+++|.
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 36678999999999998888887776 57766665432 1 111 3589999999999999
Q ss_pred eeEEEecCCccEEEEE
Q 037035 155 VHFQLNVGKGKATFVP 170 (231)
Q Consensus 155 ~H~~~N~g~~~a~~i~ 170 (231)
.|+++..+.. +++.
T Consensus 171 yH~Fw~e~g~--vLig 184 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIG 184 (225)
T ss_dssp EEEEEE-TTS--EEEE
T ss_pred eeeEEecCCC--EEEE
Confidence 9999876544 4443
No 66
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.92 E-value=0.14 Score=43.66 Aligned_cols=78 Identities=23% Similarity=0.212 Sum_probs=47.4
Q ss_pred EEEEEEEcCCcccCCccCCCC--CEEEEEE--eCEEEEEEEcCCC------------------eEEEEEECCCCEEEecC
Q 037035 95 SLFRIDLGVGGINPPHTHPRA--TEAGIVL--KGRVLVGFVTTNN------------------TFFSKVLTPGMVFLIPR 152 (231)
Q Consensus 95 s~~~v~l~pgg~~~pH~Hp~a--~Ei~yVl--~G~~~v~~v~~~~------------------~~~~~~L~~GDv~viP~ 152 (231)
.+....+++|+....|.||++ +-+.||- .|.+.+.+.++.. ......-++||+++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 566678899999999999986 2334443 2223333333220 01112448999999999
Q ss_pred CCeeEEE-ecCCccEEEEEEEe
Q 037035 153 AHVHFQL-NVGKGKATFVPIFN 173 (231)
Q Consensus 153 G~~H~~~-N~g~~~a~~i~~~~ 173 (231)
-+.|... |.++++-+-+ .||
T Consensus 177 ~L~H~v~p~~~~~~RISi-SFN 197 (201)
T TIGR02466 177 WLRHEVPPNESEEERISV-SFN 197 (201)
T ss_pred CCceecCCCCCCCCEEEE-EEe
Confidence 9999975 4444443333 443
No 67
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.67 E-value=0.29 Score=46.36 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=43.2
Q ss_pred CCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 108 PPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 108 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
..-.+.+++|++++.+|++++.- +-|+ ..+++||++|||+|+.+.+. ..+.+++.+.
T Consensus 147 ~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~-l~~gp~rgyi 203 (438)
T PRK05341 147 RYFYNADGELLIVPQQGRLRLAT--ELGV---LDVEPGEIAVIPRGVKFRVE-LPDGPARGYV 203 (438)
T ss_pred ceeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEEcCccEEEEe-cCCCCeeEEE
Confidence 34467799999999999998764 2365 46999999999999998875 3344555554
No 68
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=94.64 E-value=0.15 Score=44.82 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 114 RATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 114 ~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
++-++.++++|++.+.+ +++ ...+++||++++|+|.+|......+
T Consensus 48 ~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 48 KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCCC
Confidence 45689999999999864 345 3579999999999999998765443
No 69
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.53 E-value=0.32 Score=45.90 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=42.7
Q ss_pred CCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 108 PPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 108 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
..-++.+++|++++.+|++.+.-. -|+ ..+++||++|||+|+.+.+.=.+ +++.+
T Consensus 141 ~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~g--p~rgy 195 (429)
T TIGR01015 141 RAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLE--PARGY 195 (429)
T ss_pred ceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCC--CceEE
Confidence 344577999999999999988742 365 46999999999999998886544 44444
No 70
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=94.52 E-value=0.12 Score=39.84 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=44.8
Q ss_pred CcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecC--CCeeEEEecCC-ccEEEE
Q 037035 104 GGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPR--AHVHFQLNVGK-GKATFV 169 (231)
Q Consensus 104 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~--G~~H~~~N~g~-~~a~~i 169 (231)
+.-.++|-|.+-+-+.||++|+++-. |+.|. ..+|++||+-++-+ |+.|...|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 44558899977777789999998654 55555 35799999888765 78999999887 666654
No 71
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.29 E-value=0.22 Score=44.20 Aligned_cols=61 Identities=13% Similarity=-0.023 Sum_probs=47.9
Q ss_pred cCCcccCCccC-CCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECC-CCEEEecCCCeeEEEecC
Q 037035 102 GVGGINPPHTH-PRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTP-GMVFLIPRAHVHFQLNVG 162 (231)
Q Consensus 102 ~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~-GDv~viP~G~~H~~~N~g 162 (231)
-|++...+|.| +.-.|.+.|++|++.+.+.++++.. ....+.+ ++.-++|++..|.+.-..
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 46788999999 6778999999999999988877743 3344555 456679999999998764
No 72
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.13 E-value=0.44 Score=45.08 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=42.0
Q ss_pred ccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 110 HTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 110 H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
-++.+++|++++.+|++.+.- +-|+ ..+++||++|||+|+.+.+.= .+++++.+.
T Consensus 142 f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyv 196 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKT--ELGK---LQVSPGEIVVIPRGFRFAVDL-PDGPSRGYV 196 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEecCccEEEEec-CCCCeeEEE
Confidence 467799999999999998764 3365 459999999999999987753 234555543
No 73
>COG1741 Pirin-related protein [General function prediction only]
Probab=93.94 E-value=0.19 Score=44.93 Aligned_cols=68 Identities=24% Similarity=0.237 Sum_probs=51.7
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecC--CCeeEEEec--CCccEEEE
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPR--AHVHFQLNV--GKGKATFV 169 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~--G~~H~~~N~--g~~~a~~i 169 (231)
...+.||.-.+||-|.+-+-+.||++|+++-. |+.|. ...+++||+-..-+ |..|.-.|. .+.++..+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 45688999999999988777889999998765 44444 35799999988865 679999986 23344444
No 74
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.91 E-value=0.11 Score=39.00 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=21.5
Q ss_pred eEEEEEECCCCEEEecCCCeeEEEecCCc
Q 037035 136 TFFSKVLTPGMVFLIPRAHVHFQLNVGKG 164 (231)
Q Consensus 136 ~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 164 (231)
+.+..+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 34567889999999999999999999865
No 75
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.65 E-value=0.57 Score=38.37 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCCCCCC--CceEEEEEEEcCCcccCCccCCCCCEEEE----EE-eCEEEEEEEcCCCeEEEEEECCCCEEEecCCCee
Q 037035 84 SGFPAVNT--QGVSLFRIDLGVGGINPPHTHPRATEAGI----VL-KGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVH 156 (231)
Q Consensus 84 ~~~P~L~~--~gis~~~v~l~pgg~~~pH~Hp~a~Ei~y----Vl-~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H 156 (231)
+++|.... .-..+....+.||+.+.||.-+....+-+ ++ .+...+.+ +++ ....++|+++++.-...|
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H 142 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEH 142 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-E
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEE
Confidence 44544432 23446667889999999998764333211 22 12233332 234 356899999999999999
Q ss_pred EEEecCCccEEEEE
Q 037035 157 FQLNVGKGKATFVP 170 (231)
Q Consensus 157 ~~~N~g~~~a~~i~ 170 (231)
+..|.|+++-+.+.
T Consensus 143 ~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 143 EVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEESSSS-EEEEE
T ss_pred EEEeCCCCCEEEEE
Confidence 99999987655543
No 76
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.052 Score=51.73 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=45.1
Q ss_pred EEEEEcCCc--ccCCccCCCCCEEEEEEeCEEEEEEEcCCC-------------------e-EEEEEECCCCEEEecCCC
Q 037035 97 FRIDLGVGG--INPPHTHPRATEAGIVLKGRVLVGFVTTNN-------------------T-FFSKVLTPGMVFLIPRAH 154 (231)
Q Consensus 97 ~~v~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-------------------~-~~~~~L~~GDv~viP~G~ 154 (231)
+-+.|.|-| -.+|||- +-.-+++-++|+=+..+-.|.- + ++...|++||++|||+|.
T Consensus 319 aNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~ 397 (629)
T KOG3706|consen 319 ANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGT 397 (629)
T ss_pred cceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcc
Confidence 345666544 4789998 5566777888987766655431 1 234689999999999999
Q ss_pred eeEEEe
Q 037035 155 VHFQLN 160 (231)
Q Consensus 155 ~H~~~N 160 (231)
+|.-..
T Consensus 398 IHQA~t 403 (629)
T KOG3706|consen 398 IHQADT 403 (629)
T ss_pred eeeccc
Confidence 998754
No 77
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.23 E-value=0.73 Score=40.57 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=45.8
Q ss_pred ceEEEEEEEcCCccc-----CCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 93 GVSLFRIDLGVGGIN-----PPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 93 gis~~~v~l~pgg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
++.+.++...+..+. ..|.+.+.--++++++|++.+.. +++ ...+++||++++|.+.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 466666666654322 23444454567788999998875 455 3579999999999999998765443
No 78
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=93.21 E-value=0.63 Score=39.66 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=67.5
Q ss_pred cccCCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEe
Q 037035 71 FDVFKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLI 150 (231)
Q Consensus 71 ~~~~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~vi 150 (231)
.-..|+.+..+...+ +-...++++.+.||...|-|.| -.-|.+.|++|. +.|++|+ +.+||..--
T Consensus 110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH-~G~E~t~vl~G~----~sde~G~-----y~vgD~~~~ 174 (216)
T COG3806 110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTH-VGIERTAVLEGA----FSDENGE-----YLVGDFTLA 174 (216)
T ss_pred eecCCcceeecccCC-----CCCceeEEEEeccCcccccccc-cceEEEEEEeec----cccCCCc-----cccCceeec
Confidence 345566555554332 3357899999999999999999 579999999996 4566664 789999999
Q ss_pred cCCCeeEEEecCCccEEEEEEEeC
Q 037035 151 PRAHVHFQLNVGKGKATFVPIFNS 174 (231)
Q Consensus 151 P~G~~H~~~N~g~~~a~~i~~~~s 174 (231)
+.+.-|.-.-..+.++..+++++.
T Consensus 175 d~~v~H~piv~~~~eClcl~al~~ 198 (216)
T COG3806 175 DGTVQHSPIVLPPGECLCLAALDG 198 (216)
T ss_pred CCccccccccCCCCCceEEEEcCC
Confidence 999999866666777877777753
No 79
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=93.17 E-value=0.38 Score=40.81 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=43.8
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEe-CEEEEEEEcCC----------------CeEE------EEEECCCCEEEecCCC
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLK-GRVLVGFVTTN----------------NTFF------SKVLTPGMVFLIPRAH 154 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~----------------~~~~------~~~L~~GDv~viP~G~ 154 (231)
.+.+.+|...|+|.|++-.|=++=-. |++++.+...+ |+.. ..+|++|+.+.+|+|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 45678999999999986655544332 33333332211 1111 3589999999999999
Q ss_pred eeEEEecC
Q 037035 155 VHFQLNVG 162 (231)
Q Consensus 155 ~H~~~N~g 162 (231)
.|+++.-+
T Consensus 170 ~HsFwae~ 177 (225)
T COG3822 170 YHSFWAEE 177 (225)
T ss_pred eeeeeecC
Confidence 99998754
No 80
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=92.65 E-value=0.093 Score=46.31 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=43.1
Q ss_pred eEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEe
Q 037035 94 VSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFN 173 (231)
Q Consensus 94 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 173 (231)
+....+.++.|.--.+|+|+ ..|-.|||+|++..+.-...+ ..+|.+|..+.-|.+..|... .++++++++.-.+
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence 44566777777788999995 689999999999885422111 357999999999999999998 6788888886554
No 81
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.35 Score=44.75 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCC--e---------------EEEEEECCCCEE
Q 037035 86 FPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN--T---------------FFSKVLTPGMVF 148 (231)
Q Consensus 86 ~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~--~---------------~~~~~L~~GDv~ 148 (231)
+|.-+.-.+.+. ...+||.+.+||-+. +-+++=..|+=+..+.-..+ + .....+.+||+.
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiL 189 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDIL 189 (383)
T ss_pred CccccccceEEE--EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCcee
Confidence 344443344444 668999999999853 55555555555555432111 0 123689999999
Q ss_pred EecCCCeeEEEec
Q 037035 149 LIPRAHVHFQLNV 161 (231)
Q Consensus 149 viP~G~~H~~~N~ 161 (231)
|||+|.+|+-...
T Consensus 190 YiPp~~~H~gvae 202 (383)
T COG2850 190 YIPPGFPHYGVAE 202 (383)
T ss_pred ecCCCCCcCCccc
Confidence 9999999998875
No 82
>PRK10579 hypothetical protein; Provisional
Probab=91.90 E-value=2.6 Score=31.75 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=45.2
Q ss_pred EEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 037035 100 DLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVP 170 (231)
Q Consensus 100 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 170 (231)
.+.||- .+.-..+.|++-|++|++++.+- |...++++++|+.|-||.+.-.-++.. +....++
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C 91 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLC 91 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEEC--cceeeEE
Confidence 344554 34445688999999999999873 333467899999999999987777653 3444444
No 83
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=91.84 E-value=1 Score=38.52 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=61.9
Q ss_pred CCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCC----------eEEEE------EE-CCCC-EEE
Q 037035 88 AVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN----------TFFSK------VL-TPGM-VFL 149 (231)
Q Consensus 88 ~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------~~~~~------~L-~~GD-v~v 149 (231)
...+..+++....|+||+.+|+|=||+-+-+.-|+.|++.+.-.|.-. +.... ++ .+++ .+.
T Consensus 38 iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL 117 (200)
T PF07847_consen 38 IYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVL 117 (200)
T ss_pred EEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEE
Confidence 345557889999999999999999999888888999999987654311 11111 12 3334 444
Q ss_pred ecC--CCeeEEEecCCccEEEEEEEe
Q 037035 150 IPR--AHVHFQLNVGKGKATFVPIFN 173 (231)
Q Consensus 150 iP~--G~~H~~~N~g~~~a~~i~~~~ 173 (231)
-|+ |-+|.+.+.+ +++.++-++.
T Consensus 118 ~P~~ggNiH~f~a~~-~p~AflDIL~ 142 (200)
T PF07847_consen 118 YPTSGGNIHEFTALT-GPCAFLDILA 142 (200)
T ss_pred ccCCCCeeEEEEeCC-CCeEEEEEcc
Confidence 565 4999999986 8888888875
No 84
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=91.70 E-value=1.3 Score=38.55 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred CCceEEEccCCCCCCCCCCceEEEEEEEcCCcccCC-ccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecC
Q 037035 74 FKRAVTFGDVSGFPAVNTQGVSLFRIDLGVGGINPP-HTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPR 152 (231)
Q Consensus 74 ~G~~v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~ 152 (231)
.|.+.+.+. |.--.-++.+..+.++||+..|- -+|- -+-=+||++|++...+ ++. ...+++||.+..-+
T Consensus 166 dg~~attv~----P~d~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrL---n~d--wv~V~aGD~mwm~A 235 (264)
T COG3257 166 DGVIATTVL----PKELRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRL---NNN--WVPVEAGDYIWMGA 235 (264)
T ss_pred CCeEEEeeC----ccccCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEee---cCc--eEEeecccEEEeec
Confidence 444444433 33333478899999999998763 3452 2346899999998876 233 45799999999999
Q ss_pred CCeeEEEecCCccEEEE
Q 037035 153 AHVHFQLNVGKGKATFV 169 (231)
Q Consensus 153 G~~H~~~N~g~~~a~~i 169 (231)
-.+.+.+..|......+
T Consensus 236 ~cpQacyagG~g~frYL 252 (264)
T COG3257 236 YCPQACYAGGRGAFRYL 252 (264)
T ss_pred cChhhhccCCCCceEEE
Confidence 99999988877755554
No 85
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=91.66 E-value=1.5 Score=33.08 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=42.5
Q ss_pred EEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 97 FRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
..-.+.||- .+....+.|++-|++|++.+.+- |...++++++|+.|.||++.-.-++-. ++...++.
T Consensus 26 TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 26 TLGVMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EEEEE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred eEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 334455655 34445678999999999999983 333367899999999999988777653 44555543
No 86
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=91.27 E-value=0.94 Score=34.17 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=42.1
Q ss_pred EEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEE
Q 037035 97 FRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIF 172 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 172 (231)
..+.++||+.......+...-++||++|++.+. ++. ..+.+|+++++..|..-.+.+.+ +++.++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 457788888543222223357999999997653 221 46999999999977666666653 666666543
No 87
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=90.66 E-value=3.1 Score=33.45 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=54.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeC-EEEEEEEcCCCeEEEEEE----CCCC--EEEecCCCeeEEEecCCcc
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKG-RVLVGFVTTNNTFFSKVL----TPGM--VFLIPRAHVHFQLNVGKGK 165 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~~~~~~~~L----~~GD--v~viP~G~~H~~~N~g~~~ 165 (231)
-.+....-|.++.....|.- +++|+.+-..| .+++.+++++++....+| .+|+ .++||+|....-.-.+...
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 35555666888777777765 68899998888 789999999987666566 3454 7899999988875544555
Q ss_pred EEEEE
Q 037035 166 ATFVP 170 (231)
Q Consensus 166 a~~i~ 170 (231)
-.+++
T Consensus 119 y~Lvs 123 (139)
T PF06172_consen 119 YSLVS 123 (139)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 88
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.46 E-value=3.1 Score=38.59 Aligned_cols=65 Identities=11% Similarity=-0.018 Sum_probs=46.2
Q ss_pred EEEcCCccc-CCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 99 IDLGVGGIN-PPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 99 v~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
+...-.+|. ..-++.+.+|++++.+|++++.-. -|. .++++||..+||+|+.....-...+ +..+
T Consensus 129 ~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te--~G~---l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 129 VYKVNESMTKRFFRNADGELLIVPQQGELRLKTE--LGV---LEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred EEEccccchhhhhhcCCCCEEEEeecceEEEEEe--ece---EEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 333444555 455778999999999999987542 244 5799999999999998877654333 4444
No 89
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.04 E-value=2.4 Score=39.69 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=42.1
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEE
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 159 (231)
.+.+.++++..+.... ..+..++++|++|++++.. ++. ...|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~~~---~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTTL---SQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEEe---cCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence 4667777776542222 2246799999999999853 343 356999999999998876665
No 90
>PLN02288 mannose-6-phosphate isomerase
Probab=90.02 E-value=1.1 Score=42.14 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=40.9
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCC
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAH 154 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~ 154 (231)
.+++.++++.++.......+ +..+|++|++|++++.. .+......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence 67888888887754222113 46799999999999853 222112469999999999874
No 91
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=90.00 E-value=1.6 Score=36.22 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=45.3
Q ss_pred eEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEE--cCCC----eEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 037035 94 VSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFV--TTNN----TFFSKVLTPGMVFLIPRAHVHFQLNVGKGK 165 (231)
Q Consensus 94 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~~~----~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 165 (231)
+++..+++.||.+.++|-| .-.-++=|++|.-+-.+- +..+ ....+.+.+|++- .-+|.+|...|.+...
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCc
Confidence 6788999999999999999 667777788885432221 1111 1113456667666 3337777777766543
No 92
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=89.35 E-value=0.77 Score=39.61 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 037035 103 VGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVG 162 (231)
Q Consensus 103 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 162 (231)
|+.-.--|..+ ..|++|-.+|...+-+++. ++.....+++||++..|..++|.-+.-.
T Consensus 42 PN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFa 99 (279)
T KOG3995|consen 42 PNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFA 99 (279)
T ss_pred CCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhc
Confidence 33344467664 6899999999999999874 5556788999999999999999865443
No 93
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.03 E-value=0.27 Score=37.10 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=15.8
Q ss_pred CCcchhHHHHHHHHHHHhhcc-ccccCC
Q 037035 1 MASSSMSLFGLLLVLVILPFP-SHASDP 27 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~d~ 27 (231)
|||++++||..++++|||+++ ++|.|.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 998877666666555555543 334343
No 94
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=88.19 E-value=7.3 Score=30.58 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=41.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
++.+.++.....-.+...-+.+.--+.+.++|+..+.. +++ ...+.+||+++++.+.++.+.-.++
T Consensus 33 ~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 33 GLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred CEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 45566655553322211112233446667778887765 455 4579999999999999988765433
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=88.17 E-value=4.6 Score=36.26 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=42.6
Q ss_pred CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEE
Q 037035 92 QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 159 (231)
-.+.+.++++....... .+ +...+++|++|++++.. ++. ...|++|+.++||++.-....
T Consensus 233 ~~F~~~~~~~~~~~~~~--~~-~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAEFI--QQ-QSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCceeec--cC-CCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence 36777888876442111 22 46789999999999863 333 357999999999999866555
No 96
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=88.10 E-value=4.5 Score=36.25 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=52.3
Q ss_pred CceEEEEEEEcCCc---ccCCccCCCCCEEEEEE---eCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 037035 92 QGVSLFRIDLGVGG---INPPHTHPRATEAGIVL---KGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK 165 (231)
Q Consensus 92 ~gis~~~v~l~pgg---~~~pH~Hp~a~Ei~yVl---~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 165 (231)
-.+-+....+.||+ ..|||.|++..|..|-. ++.-...+..+-.+.....++-||++++|+=.+|.-. |..+
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~ 250 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSN 250 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Cccc
Confidence 35677777889999 36999999777765521 1211111111111222367999999999999999863 5566
Q ss_pred EEEEEEEeCCC
Q 037035 166 ATFVPIFNSQN 176 (231)
Q Consensus 166 a~~i~~~~s~~ 176 (231)
-.+|...--+|
T Consensus 251 y~fiw~m~gen 261 (276)
T PRK00924 251 YTFIWGMAGEN 261 (276)
T ss_pred cEEEEEecccC
Confidence 66776654443
No 97
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=87.91 E-value=3.3 Score=30.30 Aligned_cols=61 Identities=11% Similarity=-0.006 Sum_probs=41.7
Q ss_pred CCcccCCccC-CCCCEEEEEEeCEEEEEEEcCCCe--EEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 103 VGGINPPHTH-PRATEAGIVLKGRVLVGFVTTNNT--FFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 103 pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~--~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
|.++...|.- ..--..+-|++|++.....++++. .....+++|+.-+|++...|.+.-.++
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 3455666644 222344669999999999887642 123468999999999999999988764
No 98
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=87.53 E-value=3.2 Score=38.60 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 037035 85 GFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKG 164 (231)
Q Consensus 85 ~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 164 (231)
..|-.. .+.+.+++++.|.....-.- +..-|+.|++|++++.-.+ +. ...+++|||++||+.+.-.+. ..++
T Consensus 326 Y~Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~-~~sd 397 (411)
T KOG2757|consen 326 YDPPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLS-SSSD 397 (411)
T ss_pred eCCCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceee-ccCc
Confidence 344444 67888888888765332233 4678999999999987532 22 357999999999999877553 3445
Q ss_pred cEEEEEEE
Q 037035 165 KATFVPIF 172 (231)
Q Consensus 165 ~a~~i~~~ 172 (231)
+...+-++
T Consensus 398 ~~~~yrAf 405 (411)
T KOG2757|consen 398 PFLGYRAF 405 (411)
T ss_pred ceeeeecc
Confidence 55544333
No 99
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=85.74 E-value=5.3 Score=35.43 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=50.4
Q ss_pred ceEEEccCCCCCCCCCCceEEEEEEEcCCc---ccCCccCCCC--------CEEEEEE-e---CEEEEEEEcCC-CeEEE
Q 037035 76 RAVTFGDVSGFPAVNTQGVSLFRIDLGVGG---INPPHTHPRA--------TEAGIVL-K---GRVLVGFVTTN-NTFFS 139 (231)
Q Consensus 76 ~~v~~~~~~~~P~L~~~gis~~~v~l~pgg---~~~pH~Hp~a--------~Ei~yVl-~---G~~~v~~v~~~-~~~~~ 139 (231)
..|......+.+. .-.+-+..+. .|+| ..|||.|++. +|+.|-. + |-+.-.+-+++ .....
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 5566655555552 2246666666 6666 4799999763 4555542 2 43332222222 11234
Q ss_pred EEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCC
Q 037035 140 KVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQN 176 (231)
Q Consensus 140 ~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~ 176 (231)
..++-||++.+|.| .|-+...--....++.+.-..+
T Consensus 212 ~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 67999999999999 4444332224455666665444
No 100
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=85.35 E-value=4 Score=28.23 Aligned_cols=56 Identities=18% Similarity=0.045 Sum_probs=40.0
Q ss_pred EEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 037035 100 DLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 100 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
.|.||.....+-. +...+-|.+|++-+.. ++....+-|++||.+.+++|.--++..
T Consensus 3 ~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLRAA--AGQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeEcC--CCcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 4566666655544 3445899999887765 344446789999999999998776654
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=84.32 E-value=3.6 Score=28.48 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=32.9
Q ss_pred EEcCCccc-CCccCCCCCEEEEEEeCEEEEEEEcCCCeEE-EEEECCCCEE
Q 037035 100 DLGVGGIN-PPHTHPRATEAGIVLKGRVLVGFVTTNNTFF-SKVLTPGMVF 148 (231)
Q Consensus 100 ~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~-~~~L~~GDv~ 148 (231)
.+++|..+ ..+-+ ...+++|++|.+.+...+.+++.. ...+.+||++
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 45555543 23333 578999999999999988777632 4677888776
No 102
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=84.27 E-value=12 Score=31.79 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=44.9
Q ss_pred CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEEEecCCCe
Q 037035 92 QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVFLIPRAHV 155 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~viP~G~~ 155 (231)
++.......+++|...-..=. ....+++|++|.+.+...+++|+. ....+.+||++-+..+..
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~ 97 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGST 97 (230)
T ss_pred ccceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCc
Confidence 356667788888876543323 356799999999999988877753 345668999887655443
No 103
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=81.23 E-value=15 Score=33.54 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=42.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
.+++.+.++..-.-.. +.+...+++|++|++++.. +++ ...|++|+.+++|+...-+..-
T Consensus 241 ~F~l~~~~i~~~~~~~---~~~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~i~ 300 (312)
T COG1482 241 DFALYKWDISGTAEFI---KQESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYTIE 300 (312)
T ss_pred ceEEEEEeccChhhhc---cCCCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEEEE
Confidence 5777777777522111 1236799999999999875 345 4679999999999996655543
No 104
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=81.21 E-value=7 Score=32.01 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=35.9
Q ss_pred EEEEcCCcccCCccCC-CCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEEEec
Q 037035 98 RIDLGVGGINPPHTHP-RATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVFLIP 151 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~viP 151 (231)
...+++|...-.-=-+ .+..+++|++|.+++...+++|+. ....+.+||++=.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 3456666543221111 246799999999999998888764 34566999987543
No 105
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=80.35 E-value=21 Score=29.34 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=37.5
Q ss_pred EEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCe-EEEEEECCCCEEEe
Q 037035 97 FRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNT-FFSKVLTPGMVFLI 150 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~L~~GDv~vi 150 (231)
....+++|......=. ....+++|++|.+++...+.+|+ .....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 4567778776543222 35689999999999988776664 34457899998744
No 106
>PLN02868 acyl-CoA thioesterase family protein
Probab=76.29 E-value=10 Score=35.42 Aligned_cols=53 Identities=13% Similarity=-0.034 Sum_probs=38.9
Q ss_pred EEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEe
Q 037035 97 FRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLI 150 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~vi 150 (231)
....+++|.++-.- -.....+++|++|++++...+++++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~-Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVRE-GEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeC-CCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 34567777755332 224578999999999998887777666678899998874
No 107
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=74.82 E-value=8.9 Score=33.15 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=61.4
Q ss_pred cCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCCCc--c
Q 037035 102 GVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPG--V 179 (231)
Q Consensus 102 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg--~ 179 (231)
.-.|....|| ++-...|++|+..... .|+....+.++||....|+|......=..+ .-++.--..-=|. .
T Consensus 109 gTeGhsGrh~---ad~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~LEY~RG~IP~~lp 180 (216)
T PF04622_consen 109 GTEGHSGRHW---ADDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQMPPG--TWALEYGRGWIPSMLP 180 (216)
T ss_pred CCCCCCcceE---eeeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEeCCC--eEEEEecCCchhhhhH
Confidence 3345666776 4678899999987754 355556789999999999999877655322 2222211111121 1
Q ss_pred eeccchhhcCCCCCCHHHHHhhcCCCHHH
Q 037035 180 SDSVGTLFDTNPSVPNSVLTKSFLVSDDV 208 (231)
Q Consensus 180 ~~~~~slf~~~~~~p~~vla~af~v~~~~ 208 (231)
+.+++.+|++ ++-..+-++..+..++
T Consensus 181 f~~~dt~~sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 181 FGFADTLFST---LDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHHHhc---cchHHHHHHHHHHHHH
Confidence 3455788876 8777777776666544
No 108
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=74.73 E-value=7.1 Score=35.81 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=30.7
Q ss_pred EEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeCCCCcce
Q 037035 138 FSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVS 180 (231)
Q Consensus 138 ~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~ 180 (231)
..-..++|++++||.|..|-+.|...+-|+.--+.+..|.+++
T Consensus 263 IEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 263 IECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred ceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 4567899999999999999999975554433333445565554
No 109
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=73.96 E-value=22 Score=29.34 Aligned_cols=77 Identities=23% Similarity=0.152 Sum_probs=53.4
Q ss_pred ceEEEEEEEc--CCcccCCccCCCCCEEEEEEeCEEEEEEEcCCC-----eEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 037035 93 GVSLFRIDLG--VGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN-----TFFSKVLTPGMVFLIPRAHVHFQLNVGKGK 165 (231)
Q Consensus 93 gis~~~v~l~--pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 165 (231)
++++.|..-. |=.+...=.||..++.++-+.|+-.+-++.+.+ +......+.|+-+.+-+|++|...-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 5666665422 222334456888999999999999888887642 445668999999999999999764332344
Q ss_pred EEEE
Q 037035 166 ATFV 169 (231)
Q Consensus 166 a~~i 169 (231)
..++
T Consensus 135 ~dF~ 138 (162)
T PRK03606 135 SDFL 138 (162)
T ss_pred ceEE
Confidence 4443
No 110
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=72.64 E-value=45 Score=29.52 Aligned_cols=82 Identities=15% Similarity=0.022 Sum_probs=49.2
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCC--------CEEE
Q 037035 78 VTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPG--------MVFL 149 (231)
Q Consensus 78 v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~G--------Dv~v 149 (231)
+..++.+.. +.. -+.+..++|++|.....-.- +-+-.++.++|++++.+ +++. ...+..- |.++
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~---~g~~-~~~l~~R~~vF~~~~d~lY 85 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTV---DGEE-FYELGGRESVFDGPPDALY 85 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEE---TTEE-EEEE-TTSSGGGS--EEEE
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEe---CCce-EEEecccccccCCCCcEEE
Confidence 444444433 333 34556788889887655433 33445567899999987 4522 3456666 9999
Q ss_pred ecCCCeeEEEecCCccEEEE
Q 037035 150 IPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 150 iP~G~~H~~~N~g~~~a~~i 169 (231)
+|+|.---+.+..+ +++.
T Consensus 86 vp~g~~~~i~a~~~--ae~~ 103 (261)
T PF04962_consen 86 VPRGTKVVIFASTD--AEFA 103 (261)
T ss_dssp E-TT--EEEEESST--EEEE
T ss_pred eCCCCeEEEEEcCC--CEEE
Confidence 99999988877544 4444
No 111
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=71.68 E-value=20 Score=29.43 Aligned_cols=80 Identities=23% Similarity=0.208 Sum_probs=45.5
Q ss_pred ceEEEEEEEcCCc--ccCCccCCCCCEEEEEEeCEE-EEEEEcCCC------eEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 93 GVSLFRIDLGVGG--INPPHTHPRATEAGIVLKGRV-LVGFVTTNN------TFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 93 gis~~~v~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~-~v~~v~~~~------~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
++++.+..-.+.- +...=.||..+|.++-+.|+. .+-++-+++ ++..+.+..|+-+.+-+|++|...=.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 4666665433322 223446777899999999998 666665442 4556789999999999999998644334
Q ss_pred ccEEEEEEE
Q 037035 164 GKATFVPIF 172 (231)
Q Consensus 164 ~~a~~i~~~ 172 (231)
++..++.+-
T Consensus 136 ~~~~f~vv~ 144 (165)
T PF04115_consen 136 EPADFLVVD 144 (165)
T ss_dssp SEEEEEEEE
T ss_pred CcceEEEEe
Confidence 666666553
No 112
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.44 E-value=16 Score=27.00 Aligned_cols=42 Identities=26% Similarity=0.171 Sum_probs=33.6
Q ss_pred CCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEE
Q 037035 114 RATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQ 158 (231)
Q Consensus 114 ~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~ 158 (231)
-+.|++-|+.|.+.+-+.+ ...+++..+|+.|.+|...-..+
T Consensus 40 a~~E~Mtvv~Gal~v~lpg---s~dWq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPG---SDDWQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CCceEEEEEeeEEEEEcCC---CcccEEecCCceEEcCCCCeEEE
Confidence 5689999999999988753 33467899999999998765444
No 113
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=70.58 E-value=27 Score=24.59 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=35.6
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCC-eEEEEEECCCCEEEec
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN-TFFSKVLTPGMVFLIP 151 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~L~~GDv~viP 151 (231)
...+.+|...- +-......+.+|++|.+.+...+.++ +.....+.+||++-..
T Consensus 19 ~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 45667776542 23334578999999999988765554 3445678899877443
No 114
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=69.24 E-value=24 Score=24.82 Aligned_cols=53 Identities=23% Similarity=0.149 Sum_probs=35.0
Q ss_pred EEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCe-EEEEEECCCCEEEe
Q 037035 97 FRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNT-FFSKVLTPGMVFLI 150 (231)
Q Consensus 97 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~L~~GDv~vi 150 (231)
....+.+|...-.. ......+.+|++|.+.+...+++|+ .....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34566777754222 2234679999999999988776653 44557788887633
No 115
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=69.21 E-value=44 Score=30.02 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCCEE-EEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEec--CCccEEEEE
Q 037035 114 RATEA-GIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNV--GKGKATFVP 170 (231)
Q Consensus 114 ~a~Ei-~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~--g~~~a~~i~ 170 (231)
...|+ ++.+.|++.+.+ +++.+ .+.+.|.+++|+|........ ...++++..
T Consensus 72 ~rrE~giV~lgG~~~V~v---dG~~~--~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 72 ERRELGIINIGGAGTVTV---DGETY--ELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred CCcEEEEEEccceEEEEE---CCEEE--ecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 34564 567889999886 46644 599999999999987666642 235666663
No 116
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=68.79 E-value=2.9 Score=37.58 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.9
Q ss_pred EEEECCCCEEEecCCCeeEE
Q 037035 139 SKVLTPGMVFLIPRAHVHFQ 158 (231)
Q Consensus 139 ~~~L~~GDv~viP~G~~H~~ 158 (231)
...+++||+++||+|.+|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 46799999999999999983
No 117
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=67.77 E-value=8.5 Score=36.08 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEECCCCEEEecCCCeeEEEe
Q 037035 139 SKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 139 ~~~L~~GDv~viP~G~~H~~~N 160 (231)
...|++||.+++|+|.+|....
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcC
Confidence 4689999999999999999854
No 118
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=66.05 E-value=5.4 Score=36.39 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEECCCCEEEecCCCeeEEEe
Q 037035 139 SKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 139 ~~~L~~GDv~viP~G~~H~~~N 160 (231)
..+|++||.+++|+|.+|....
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EEecCCCCEEEecCCCceeecc
Confidence 3579999999999999999843
No 119
>PHA02984 hypothetical protein; Provisional
Probab=64.03 E-value=47 Score=29.73 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=41.3
Q ss_pred CCEEEE--EEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 115 ATEAGI--VLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 115 a~Ei~y--Vl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
..|-+| +++|+..+.+.. +++.....+++||.|.+.-+.-|.+.. ++.++.++++
T Consensus 91 snEy~FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi 147 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVI 147 (286)
T ss_pred eccEEEEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEe-CCCceEEEEE
Confidence 345555 678999998865 355567899999999999999999965 4555655543
No 120
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=62.57 E-value=24 Score=29.73 Aligned_cols=53 Identities=6% Similarity=-0.084 Sum_probs=36.6
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEEEec
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVFLIP 151 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~viP 151 (231)
...+++|...-.. ......+.+|++|.+++...+.+|+. ....+.+||++-..
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 3456666654222 22356899999999999998877753 34567999987643
No 121
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=61.89 E-value=20 Score=28.84 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCEEEEEEeCEEEEEEEcCCCeEE-EEEECCCCEEEe
Q 037035 115 ATEAGIVLKGRVLVGFVTTNNTFF-SKVLTPGMVFLI 150 (231)
Q Consensus 115 a~Ei~yVl~G~~~v~~v~~~~~~~-~~~L~~GDv~vi 150 (231)
...+.+|++|.+.+...+++|+.. ...+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 456899999999999888877543 467899997743
No 122
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=61.31 E-value=58 Score=29.80 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=45.8
Q ss_pred cCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEEeC
Q 037035 107 NPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNS 174 (231)
Q Consensus 107 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s 174 (231)
...-++.+..-++.-.+|.+.+.- +-||+ .+.++++.+||+|.-..+.-.|.....++.++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--EfGrl---lV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EFGRL---LVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--eccce---eecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 345567677666666778776653 34664 5899999999999988886667777777777653
No 123
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=59.54 E-value=38 Score=30.41 Aligned_cols=46 Identities=4% Similarity=0.028 Sum_probs=36.5
Q ss_pred CEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 037035 116 TEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK 165 (231)
Q Consensus 116 ~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 165 (231)
.-++++.+|...+.- ++++ ...+.++.++++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~--~~g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITT--SSGE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEe--CCCc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 469999999998864 2344 347999999999999999998876443
No 124
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=58.06 E-value=11 Score=35.12 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=47.0
Q ss_pred EEEc-CCcccCCc---cCCCCCEEEEEEeCEEEEEEEcCCC-------------------------eEEEEEECCCCEEE
Q 037035 99 IDLG-VGGINPPH---THPRATEAGIVLKGRVLVGFVTTNN-------------------------TFFSKVLTPGMVFL 149 (231)
Q Consensus 99 v~l~-pgg~~~pH---~Hp~a~Ei~yVl~G~~~v~~v~~~~-------------------------~~~~~~L~~GDv~v 149 (231)
+.+. .|...+.| +| +.-+...+-|+=+.-+..|.. ......=++|++++
T Consensus 202 vy~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VF 279 (427)
T KOG2131|consen 202 VYAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVF 279 (427)
T ss_pred EEeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceee
Confidence 4555 45578889 77 456888888988777766542 11123458999999
Q ss_pred ecCCCeeEEEecCCc
Q 037035 150 IPRAHVHFQLNVGKG 164 (231)
Q Consensus 150 iP~G~~H~~~N~g~~ 164 (231)
+|.|.-|...|.+++
T Consensus 280 vPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 280 VPSGWHHQVLNLGDT 294 (427)
T ss_pred ccCccccccccccce
Confidence 999999999999876
No 125
>PHA02890 hypothetical protein; Provisional
Probab=56.80 E-value=69 Score=28.56 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=40.1
Q ss_pred CCEEEE--EEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 037035 115 ATEAGI--VLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPI 171 (231)
Q Consensus 115 a~Ei~y--Vl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 171 (231)
..|.+| +++|+.++.+.. +++.....+++||.|.+.-+.-|.+.. .++.++.+
T Consensus 90 SnEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Vi 144 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFIT 144 (278)
T ss_pred eccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEE
Confidence 345555 678999998764 456677899999999999999999976 44544443
No 126
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=56.23 E-value=69 Score=26.67 Aligned_cols=79 Identities=20% Similarity=0.099 Sum_probs=53.0
Q ss_pred ceEEEEEEEc--CCcccCCccCCCCCEEEEEEeC-EEEEEEEcCCC-----eEEEEEECCCCEEEecCCCeeEEEecCCc
Q 037035 93 GVSLFRIDLG--VGGINPPHTHPRATEAGIVLKG-RVLVGFVTTNN-----TFFSKVLTPGMVFLIPRAHVHFQLNVGKG 164 (231)
Q Consensus 93 gis~~~v~l~--pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~~-----~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 164 (231)
+++++|..-. |=.+...=.||..++-++-+.| ..++.++.+++ ....+....|+-+..-+|++|...-.=+.
T Consensus 55 ~isifr~~p~~~p~~i~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~ 134 (171)
T PRK13395 55 LVSLFRAQPRALPVAITMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDA 134 (171)
T ss_pred EEEEEeccccCCCcceeeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCC
Confidence 4555555422 1223344567888999999999 87888876542 34566789999999999999997544344
Q ss_pred cEEEEEE
Q 037035 165 KATFVPI 171 (231)
Q Consensus 165 ~a~~i~~ 171 (231)
+..++++
T Consensus 135 ~~dF~vv 141 (171)
T PRK13395 135 VSDFVVV 141 (171)
T ss_pred CccEEEE
Confidence 4555544
No 127
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=55.73 E-value=46 Score=26.62 Aligned_cols=56 Identities=23% Similarity=0.130 Sum_probs=37.8
Q ss_pred EEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCe-EEEEEECCCCEEEecC
Q 037035 96 LFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNT-FFSKVLTPGMVFLIPR 152 (231)
Q Consensus 96 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~L~~GDv~viP~ 152 (231)
.....+++|...-..=- .+.-+.+|++|.+.+...+++|+ .....+.+||++-...
T Consensus 23 ~~~~~~~~g~~l~~~g~-~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGE-EADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCC-cCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 34455566644333222 34558899999999999988775 3345689999987764
No 128
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=55.32 E-value=34 Score=24.68 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred EEEcCCcccCCccCC---CCCEEEEE--Ee-CE-----EEEEEEcC---CCeEEEEE-----ECCCCEEEecC-CCeeEE
Q 037035 99 IDLGVGGINPPHTHP---RATEAGIV--LK-GR-----VLVGFVTT---NNTFFSKV-----LTPGMVFLIPR-AHVHFQ 158 (231)
Q Consensus 99 v~l~pgg~~~pH~Hp---~a~Ei~yV--l~-G~-----~~v~~v~~---~~~~~~~~-----L~~GDv~viP~-G~~H~~ 158 (231)
....+|+...||+.. ....+.++ +. .. +...+.+. ++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 456889999999864 23333333 33 21 33444432 11111222 88999999999 999998
Q ss_pred Eec
Q 037035 159 LNV 161 (231)
Q Consensus 159 ~N~ 161 (231)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 766
No 129
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=54.96 E-value=49 Score=26.34 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=45.8
Q ss_pred CCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEE----eCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 037035 87 PAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVL----KGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 87 P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl----~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
|+++ ++.+.++.|.+|....-- +..|+...+ .|++.+++-++.|. .+++||++-+-.|..-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~~----~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEGC----LIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcCc----ccCCccEEEecccchhhhcC
Confidence 6666 677777888887655432 344665554 36777777665454 58999999999999887765
No 130
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=54.64 E-value=75 Score=26.57 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=33.4
Q ss_pred EEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEEEe
Q 037035 100 DLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVFLI 150 (231)
Q Consensus 100 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~vi 150 (231)
.+++|...-.- -.....+.+|++|.+++...+++|+. ....+.+||++-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 45555533221 22356799999999999988877654 3345689999854
No 131
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=53.93 E-value=32 Score=28.95 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=36.0
Q ss_pred EEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEe
Q 037035 98 RIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLI 150 (231)
Q Consensus 98 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~vi 150 (231)
...+++|.... +-......+++|++|.+++.....+++.....+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhh
Confidence 45666766543 23344678999999999998765555555567899997643
No 132
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=48.00 E-value=79 Score=25.43 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=36.5
Q ss_pred ccCCCCCEEEEEEeCEEEEEEEcCCC------------------eEEEEEECCCCEEEecCCCeeEEE
Q 037035 110 HTHPRATEAGIVLKGRVLVGFVTTNN------------------TFFSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 110 H~Hp~a~Ei~yVl~G~~~v~~v~~~~------------------~~~~~~L~~GDv~viP~G~~H~~~ 159 (231)
=.|-+--.+-|+++|+-.+++..... ......|++|+..++-++.+|...
T Consensus 60 E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 60 TGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 35667788999999999888854321 001357888888888888888875
No 133
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=46.41 E-value=1e+02 Score=24.63 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=31.4
Q ss_pred CccCCCCCEEEEEEeCEEEEEEE-cCCC-------------eE-------EEEEECCCCEEEecCCCeeEEE
Q 037035 109 PHTHPRATEAGIVLKGRVLVGFV-TTNN-------------TF-------FSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 109 pH~Hp~a~Ei~yVl~G~~~v~~v-~~~~-------------~~-------~~~~L~~GDv~viP~G~~H~~~ 159 (231)
+=.|-+--.+-|+++|+=++++. +..+ .. ....|++|+.++|=++-+|.-.
T Consensus 63 ~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 63 FESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred eeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 33577778899999999999983 3221 01 1357999999999999999853
No 134
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.26 E-value=9.8 Score=32.95 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEc
Q 037035 90 NTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVT 132 (231)
Q Consensus 90 ~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~ 132 (231)
.+-++|+....++|++++|.|-||.-+-+.-++-|+..+--.|
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 3557899999999999999999998887888899998876544
No 135
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=45.62 E-value=43 Score=22.63 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=21.3
Q ss_pred EEEEEcCCCeEEEEEECCCCEEEecCCCeeE
Q 037035 127 LVGFVTTNNTFFSKVLTPGMVFLIPRAHVHF 157 (231)
Q Consensus 127 ~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~ 157 (231)
++++-|+.++.++.+|++|..+.--+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 5678888899999999999999888886653
No 136
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=45.34 E-value=57 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=18.9
Q ss_pred CccCCCCCEEEEEEeCEEEEEEEc
Q 037035 109 PHTHPRATEAGIVLKGRVLVGFVT 132 (231)
Q Consensus 109 pH~Hp~a~Ei~yVl~G~~~v~~v~ 132 (231)
+=.|-+--.+-|+++|+=++++..
T Consensus 63 ~E~Hr~YiDIq~~l~G~E~i~~~~ 86 (142)
T TIGR00022 63 AELHHRYLDIQLLLRGEENIEVGT 86 (142)
T ss_pred hhhhhheEEEEEeecceEEEEEec
Confidence 335666788999999999999853
No 137
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=44.56 E-value=44 Score=24.63 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=29.2
Q ss_pred CcccCCccCCCCCEEEEEEe-CEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 037035 104 GGINPPHTHPRATEAGIVLK-GRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 104 gg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
+|+..|-.+........|++ |.++.. .+++.....++.||.+++|.+.--.+..
T Consensus 22 ~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 22 SGIILPESAKEKPNQGKVVAVGPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp TSCCE-CCSSSSEEEEEEEEE-SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred ceEEeccccccccceeEEEEcCCcccc---CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 45555533322223333333 555443 3455555679999999999987555544
No 138
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=42.92 E-value=27 Score=28.05 Aligned_cols=26 Identities=8% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCCCHHHHHhhcCCCHHHHHHhHhcC
Q 037035 191 PSVPNSVLTKSFLVSDDVINAIRSAR 216 (231)
Q Consensus 191 ~~~p~~vla~af~v~~~~v~~l~~~~ 216 (231)
|.++++-+|++|++++|.+++|++..
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~~ 113 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKSH 113 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcCC
Confidence 35999999999999999999998764
No 139
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=42.60 E-value=84 Score=25.75 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=40.0
Q ss_pred cCCccCCCCCEEEEEEeCEEEEEEEcCCC-e-------------------EEEEEECCCCEEEecCCCeeEEEec
Q 037035 107 NPPHTHPRATEAGIVLKGRVLVGFVTTNN-T-------------------FFSKVLTPGMVFLIPRAHVHFQLNV 161 (231)
Q Consensus 107 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~-------------------~~~~~L~~GDv~viP~G~~H~~~N~ 161 (231)
..+=+|-+--.+-++++|+=.+++..... + ...-+|++|+..+|=+|.+|...-.
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~ 135 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCN 135 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccc
Confidence 34445667789999999999988865432 1 1235789999999988999976433
No 140
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=42.29 E-value=2.1e+02 Score=25.34 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=52.4
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCC----C-eEEEEEECCCCEEEecC
Q 037035 78 VTFGDVSGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN----N-TFFSKVLTPGMVFLIPR 152 (231)
Q Consensus 78 v~~~~~~~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~-~~~~~~L~~GDv~viP~ 152 (231)
+..++. +-+++. -+.+...+|.+|....--.- +-+-++.+++|++.+..-+.. | |.-.++=++=|.+++|.
T Consensus 16 v~~vtp-~sagw~--YVGF~~~~L~~Ges~~~~~~-~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVTP-ESAGWE--YVGFRLLRLAAGESATEETG-DRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEecC-CCCCce--eEEEEEEEccCCCcccccCC-CceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 444443 233444 35666778899987766555 335566688999998764321 2 22123345669999999
Q ss_pred CCeeEEEecCCc
Q 037035 153 AHVHFQLNVGKG 164 (231)
Q Consensus 153 G~~H~~~N~g~~ 164 (231)
|....+...++-
T Consensus 92 g~~~~vtA~t~~ 103 (270)
T COG3718 92 GSAFSVTATTDL 103 (270)
T ss_pred CceEEEEeecce
Confidence 999888776543
No 141
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=42.09 E-value=82 Score=29.20 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=53.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEE--EecCCCeeEEEec
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVF--LIPRAHVHFQLNV 161 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~--viP~G~~H~~~N~ 161 (231)
-+-+.|+.++..-++..+-..+...+-.++|.--.+.++.++|+. -...|++||-+ +++.+-=|+-...
T Consensus 266 ~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~~~~~~RHfG~~i 337 (344)
T PRK02290 266 EAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGYLEEAARHFGMAI 337 (344)
T ss_pred EEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecCCccccccee
Confidence 366889999998887776665778999999999999999999873 34689999954 4566666765443
No 142
>PF13994 PgaD: PgaD-like protein
Probab=39.58 E-value=37 Score=26.94 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.6
Q ss_pred CCHHHHHhhcCCCHHHHHHhHhcCC
Q 037035 193 VPNSVLTKSFLVSDDVINAIRSART 217 (231)
Q Consensus 193 ~p~~vla~af~v~~~~v~~l~~~~~ 217 (231)
++++=+|+.|++++++++++++...
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~k~ 125 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQAKV 125 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhCCe
Confidence 8899999999999999999988643
No 143
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=37.84 E-value=38 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHhHhcC
Q 037035 192 SVPNSVLTKSFLVSDDVINAIRSAR 216 (231)
Q Consensus 192 ~~p~~vla~af~v~~~~v~~l~~~~ 216 (231)
.++++-+|++|+++++.++++++.-
T Consensus 98 ~l~~dElA~sF~l~~e~i~qLr~~k 122 (153)
T PRK14584 98 DLDDDELASSFALSPELIAQLKSGS 122 (153)
T ss_pred CCChHHHHHHcCCCHHHHHHHHhCC
Confidence 4899999999999999999998764
No 144
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.06 E-value=68 Score=31.21 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=26.1
Q ss_pred CCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEE
Q 037035 114 RATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVF 148 (231)
Q Consensus 114 ~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~ 148 (231)
-+.|+.+|.+|.+.+ ++.+|...-.+|++|++|
T Consensus 347 vgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 347 VGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred ccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 478999999999765 556676566799999877
No 145
>COG1741 Pirin-related protein [General function prediction only]
Probab=35.97 E-value=3.2e+02 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred CCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEE
Q 037035 85 GFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVG 129 (231)
Q Consensus 85 ~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~ 129 (231)
..|.-+.. +-...+.+.+|+..+.+ -..-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 45655655 77888888999977665 112246899999988764
No 146
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=34.65 E-value=1.2e+02 Score=26.78 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=32.6
Q ss_pred EEcCCc---ccCCccCCCCC--------EEEEE----EeCEEEEEEEcCCCeE-EEEEECCCCEEEecCCC
Q 037035 100 DLGVGG---INPPHTHPRAT--------EAGIV----LKGRVLVGFVTTNNTF-FSKVLTPGMVFLIPRAH 154 (231)
Q Consensus 100 ~l~pgg---~~~pH~Hp~a~--------Ei~yV----l~G~~~v~~v~~~~~~-~~~~L~~GDv~viP~G~ 154 (231)
.+.||| .-|||-|.+.. |..|- -||=+.-.+-+.++.+ ....+.-||++.+|+|.
T Consensus 159 V~Tp~Gn~SSYPPHKHD~d~~p~Es~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GY 229 (270)
T COG3718 159 VITPGGNWSSYPPHKHDEDNLPHESYLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGY 229 (270)
T ss_pred EEcCCCCcCCCCCCcccccCCccchhhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCc
Confidence 456776 46999996542 33332 3453333333322211 24578999999999985
No 147
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=34.53 E-value=1.5e+02 Score=21.99 Aligned_cols=26 Identities=12% Similarity=-0.119 Sum_probs=19.0
Q ss_pred CCeEEEEEECCCCEEEecCCCeeEEE
Q 037035 134 NNTFFSKVLTPGMVFLIPRAHVHFQL 159 (231)
Q Consensus 134 ~~~~~~~~L~~GDv~viP~G~~H~~~ 159 (231)
+|+.....++.||.+++++..--.+.
T Consensus 51 ~G~~~~~~vk~GD~Vlf~~~~g~ev~ 76 (95)
T PRK00364 51 NGERVPLDVKVGDKVLFGKYAGTEVK 76 (95)
T ss_pred CCCEeecccCCCCEEEEcCCCCeEEE
Confidence 45656678999999999986544443
No 148
>PLN02288 mannose-6-phosphate isomerase
Probab=33.57 E-value=28 Score=32.74 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEECCCCEEEecCCCeeEEEe
Q 037035 140 KVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 140 ~~L~~GDv~viP~G~~H~~~N 160 (231)
..|++||.+++|+|.+|...-
T Consensus 253 v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 253 VKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred EecCCCCEEEecCCCCceecC
Confidence 579999999999999998754
No 149
>PHA00672 hypothetical protein
Probab=32.34 E-value=2.6e+02 Score=22.36 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=52.1
Q ss_pred CceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 92 QGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 92 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
.|+-+..+.++.|.+..=-.| +- +-+++.+|.+.+.. ++. ..+|+.=.++.-|+|--...+...|+.+..+
T Consensus 45 ~GvYARei~IPkGt~LtG~~h-kf-~~~ii~sG~itV~t---dge--~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALI-KV-STVLIFSGHATVFI---GGE--AVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred cceeEEEEeccCceeeeeeee-Ee-eEEEEecccEEEEe---CCc--EEEEecceeeecCCCcccceeeeccceEEEE
Confidence 478888899999998776677 43 44499999999875 344 3468888888889998887777655544433
No 150
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=31.63 E-value=86 Score=32.09 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=33.4
Q ss_pred EEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEE
Q 037035 96 LFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVF 148 (231)
Q Consensus 96 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~ 148 (231)
+....+.||..+-.-=. .+.++.+|++|++.+...+.+.+.....+++||+|
T Consensus 397 ~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 33456777774432212 35689999999999864322233445679999987
No 151
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.54 E-value=1.5e+02 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=53.6
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEE-EEEECCCCEE--EecCCCeeEEEec
Q 037035 93 GVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFF-SKVLTPGMVF--LIPRAHVHFQLNV 161 (231)
Q Consensus 93 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~-~~~L~~GDv~--viP~G~~H~~~N~ 161 (231)
-+.+.|+.++..-++...-..+..++-.++|.--.+.++.++|+.. ...|++||-+ +++.+-=|+-...
T Consensus 276 ~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 276 TAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYLEEAGRHFGMKI 347 (354)
T ss_pred EEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecCCCcccceEe
Confidence 4678899999888877665557889999999999999999988743 4689999954 5566767765544
No 152
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=30.95 E-value=1.6e+02 Score=21.71 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=18.9
Q ss_pred CCeEEEEEECCCCEEEecCCCeeEEEe
Q 037035 134 NNTFFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 134 ~~~~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
+|+.....++.||.+++|....-.+..
T Consensus 50 ~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T cd00320 50 NGERVPLSVKVGDKVLFPKYAGTEVKL 76 (93)
T ss_pred CCCCccccccCCCEEEECCCCceEEEE
Confidence 344445679999999999876444433
No 153
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=30.71 E-value=1.9e+02 Score=20.13 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=31.8
Q ss_pred EeCEEEEEEEcCCC-eEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 037035 122 LKGRVLVGFVTTNN-TFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFV 169 (231)
Q Consensus 122 l~G~~~v~~v~~~~-~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 169 (231)
..|+.-+.+.+.+| .++...+++||..-++.+..-. ...|+-.++-+
T Consensus 5 a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~-i~iGna~~v~v 52 (77)
T PF13464_consen 5 ATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFR-IRIGNAGAVEV 52 (77)
T ss_pred EeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEE-EEEeCCCcEEE
Confidence 44777778776666 5678899999999985444433 45566555544
No 154
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=1.9e+02 Score=21.80 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=22.7
Q ss_pred CCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 037035 133 TNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 133 ~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
.+++.....++.||.++|.+..---+...|+
T Consensus 50 ~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 50 ENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred CCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 3455566789999999999987755555443
No 155
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=29.66 E-value=2.9e+02 Score=21.97 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=38.9
Q ss_pred CEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEe---cCCccEEEEEE
Q 037035 116 TEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLN---VGKGKATFVPI 171 (231)
Q Consensus 116 ~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N---~g~~~a~~i~~ 171 (231)
.-+.+|++|+=++.+. ++ .+...+|+.++.+...+-...- ..++|...+.+
T Consensus 24 p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 4699999999988873 44 3579999999999998876543 34567777664
No 156
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=28.90 E-value=42 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=20.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHhHhcCC
Q 037035 192 SVPNSVLTKSFLVSDDVINAIRSART 217 (231)
Q Consensus 192 ~~p~~vla~af~v~~~~v~~l~~~~~ 217 (231)
||++..+|+.+|+++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 49999999999999999999988744
No 157
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=28.48 E-value=27 Score=32.20 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=52.9
Q ss_pred CCCCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCC-------e---------------------
Q 037035 85 GFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN-------T--------------------- 136 (231)
Q Consensus 85 ~~P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-------~--------------------- 136 (231)
.+|..+.-++.+.....+.|.+.+.|.-|. .-++.-+.|+.++.+.-+.. +
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 345555434566666666688999886655 56888888999988875431 0
Q ss_pred -----EEEEEECCCCEEEecCCCeeEEEe
Q 037035 137 -----FFSKVLTPGMVFLIPRAHVHFQLN 160 (231)
Q Consensus 137 -----~~~~~L~~GDv~viP~G~~H~~~N 160 (231)
.....|++||++++|+-..|+...
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhh
Confidence 012578999999999999998754
No 158
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=28.11 E-value=85 Score=26.27 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=34.3
Q ss_pred EEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 037035 117 EAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNV 161 (231)
Q Consensus 117 Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 161 (231)
-+..-++|++.+.+.. .|..+..+|.+|+-+++.++++-.+...
T Consensus 131 ~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~~ 174 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSGS 174 (215)
T ss_dssp EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEETT
T ss_pred cEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECCC
Confidence 4455688999988765 5778888999999999999988887553
No 159
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.61 E-value=1e+02 Score=31.49 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred EcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEE
Q 037035 101 LGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVF 148 (231)
Q Consensus 101 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~ 148 (231)
..||..+...=.+ -+|+.+|++|++.+.-.+.++......|++||++
T Consensus 447 f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 447 FTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred cCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 4455544433343 4799999999997654443344456789999988
No 160
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=26.27 E-value=68 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCHHHHHhhcCCCHHHHHHhH-hcCCCCC
Q 037035 193 VPNSVLTKSFLVSDDVINAIR-SARTSNK 220 (231)
Q Consensus 193 ~p~~vla~af~v~~~~v~~l~-~~~~~~~ 220 (231)
+..+.||..|.++++.|+++. +++.|+.
T Consensus 30 ~t~~~Lae~F~vspe~irrILkskw~p~~ 58 (225)
T PF06413_consen 30 WTVERLAESFKVSPEAIRRILKSKWVPTE 58 (225)
T ss_pred cCHHHHHhhCCCCHHHHHHHHhcCCCCCH
Confidence 677899999999999999985 4666543
No 161
>PHA02699 hypothetical protein; Provisional
Probab=25.41 E-value=1.8e+02 Score=27.45 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=43.2
Q ss_pred EEEEEcCCccc-CCccCCCC--CEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEE-ecCCccEEEEEE
Q 037035 97 FRIDLGVGGIN-PPHTHPRA--TEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQL-NVGKGKATFVPI 171 (231)
Q Consensus 97 ~~v~l~pgg~~-~pH~Hp~a--~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~-N~g~~~a~~i~~ 171 (231)
..+.++-|-.. .-|++++. --.+++++-++..++.-++.+..+..+++||++++|.--.-.+. ..|.+ +.++.+
T Consensus 146 ~LVKLkHGN~fm~~~m~~~sagFvAtICIKNeGiSgI~Vp~T~~lktnmqeGD~IVsRSsRGI~FLPQIGGe-AiYLIV 223 (466)
T PHA02699 146 QALKLKHDEWYMRHHMAPDMAAFVAIICIKNEGMAAIAVNNTKFLKTNIQEGDAIVFPAARGMFFLPHIGGD-AEYIIL 223 (466)
T ss_pred EEEEeeccchhhcccccCcccceEEEEEEcCCCeeEEEecCCcceeeeeecCCEEEEehhchhhhhhhcCCc-eEEEEE
Confidence 34555555432 22344333 34455777777777766666656788999999999975444332 33433 444433
No 162
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=25.33 E-value=80 Score=32.49 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=44.1
Q ss_pred EEEcCCcc-cCCccCCCCCEEEEEEeCEEEEEEEcCC----------------CeEEEEEECCCCEEEecCCCeeEEEec
Q 037035 99 IDLGVGGI-NPPHTHPRATEAGIVLKGRVLVGFVTTN----------------NTFFSKVLTPGMVFLIPRAHVHFQLNV 161 (231)
Q Consensus 99 v~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----------------~~~~~~~L~~GDv~viP~G~~H~~~N~ 161 (231)
..+.+||- +--|.+ ....++|.+.++..---..+. .+-+.-.|++|+.++||.|.+|..+-.
T Consensus 141 fhidfggtsvwyhil-~G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~Tp 219 (776)
T KOG1633|consen 141 FHIDFGGTSVWYHIL-AGEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLTP 219 (776)
T ss_pred cccCCCCcchhhhhh-ccccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeecC
Confidence 34455553 445666 456666666664321111110 122456899999999999999999876
Q ss_pred CCccEEEEEEEeC
Q 037035 162 GKGKATFVPIFNS 174 (231)
Q Consensus 162 g~~~a~~i~~~~s 174 (231)
-+.-+...-++.+
T Consensus 220 ~d~l~fgGnflhs 232 (776)
T KOG1633|consen 220 TDCLVFGGNFLHS 232 (776)
T ss_pred cchheeccchhhh
Confidence 5554444444434
No 163
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.04 E-value=27 Score=35.91 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.3
Q ss_pred EEECCCCEEEecCCCeeEEEecCC
Q 037035 140 KVLTPGMVFLIPRAHVHFQLNVGK 163 (231)
Q Consensus 140 ~~L~~GDv~viP~G~~H~~~N~g~ 163 (231)
..=.-||.++||+|.+|.++|.-+
T Consensus 801 fvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 801 FVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred hhhcccceEEecCCCcHHhhhhhh
Confidence 445779999999999999999754
No 164
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=24.91 E-value=36 Score=35.53 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=45.1
Q ss_pred CCCCCCceEEEEEEEcCCcccCCccCCCCCEEEEEEeCEEEEEEEcCCCeE-EEEEECCCCEE
Q 037035 87 PAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTF-FSKVLTPGMVF 148 (231)
Q Consensus 87 P~L~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~L~~GDv~ 148 (231)
|-|..++.++.++.+.||...--.= ..+.++.+|+.|+++.-.-.+.++. +..++..||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqg-D~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQG-DSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcC-CccCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 5567778899999999998765443 3578999999999986543333443 44578889987
No 165
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=23.36 E-value=73 Score=25.88 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCCCceeecCCC--CCccccCCCCCCCCCcCCCCeee
Q 037035 27 PDPLQDICVADLD--APISINGFPCKPASEVTSDDFFT 62 (231)
Q Consensus 27 ~~~~~d~cva~~~--~~~~~~g~~ck~p~~~~~~df~f 62 (231)
|.-..|||++.+. .++|+-|.--.. ....+||+|
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g~~--~tr~dDy~f 140 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGGDG--PTRGDDYVF 140 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCCCC--CccccceEE
Confidence 5668899999775 468888754333 335799998
No 166
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=23.22 E-value=54 Score=29.87 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=27.5
Q ss_pred ccCCCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecC
Q 037035 110 HTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPR 152 (231)
Q Consensus 110 H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~ 152 (231)
|+||+ .-|...+....+++.++.-....+.++||.+++=-
T Consensus 131 hthpd---~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~ 170 (324)
T COG2144 131 HTHPD---TPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVG 170 (324)
T ss_pred ccCCC---CCCceeeeEEecccccccccccCCCCcCCEEEEEe
Confidence 99976 44556677777777665433355789999887743
No 167
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=22.66 E-value=80 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=16.8
Q ss_pred CCHHHHHhhcCCCHHHHHHhHhc
Q 037035 193 VPNSVLTKSFLVSDDVINAIRSA 215 (231)
Q Consensus 193 ~p~~vla~af~v~~~~v~~l~~~ 215 (231)
=.+.-|.+.+|++++++++|++.
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~ 66 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRER 66 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHH
Confidence 35678889999999999999875
No 168
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=21.33 E-value=1e+02 Score=19.26 Aligned_cols=26 Identities=12% Similarity=-0.029 Sum_probs=18.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHhHhcCC
Q 037035 192 SVPNSVLTKSFLVSDDVINAIRSART 217 (231)
Q Consensus 192 ~~p~~vla~af~v~~~~v~~l~~~~~ 217 (231)
+.+..-+++.+|++..+|.+..+.+.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 38888999999999999999988764
No 169
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=21.10 E-value=1.1e+02 Score=19.09 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=21.0
Q ss_pred hhhcCCCCCCHHHHHhhcCCCHHHHHHhHhc
Q 037035 185 TLFDTNPSVPNSVLTKSFLVSDDVINAIRSA 215 (231)
Q Consensus 185 slf~~~~~~p~~vla~af~v~~~~v~~l~~~ 215 (231)
.++.. +++..-+|+.||++..+|-+.++.
T Consensus 16 ~l~~~--G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 16 ELYAE--GMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHT--T--HHHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHC--CCCHHHHHHHHCcCHHHHHHHHhc
Confidence 34555 589999999999999999988754
No 170
>PHA02951 Hypothetical protein; Provisional
Probab=21.02 E-value=3.9e+02 Score=24.53 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=43.9
Q ss_pred EEEEEcCCccc-CCccC---CCCCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEEEecCCCeeEEE-ecCCccEEEEE
Q 037035 97 FRIDLGVGGIN-PPHTH---PRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQL-NVGKGKATFVP 170 (231)
Q Consensus 97 ~~v~l~pgg~~-~pH~H---p~a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~-N~g~~~a~~i~ 170 (231)
..+.++-|-.. .-|.+ .-+--...+++-++..++.-++.......+.+||++++|+--.-.+. ..|.+ +.++.
T Consensus 102 ~lVkLkHGn~f~~~~~~~~~s~gFvAtICIKNeGiSgl~Vp~t~~LK~ni~~GD~IVsRs~rGv~fLPQIGGe-aiYLI 179 (337)
T PHA02951 102 FLVKLKHGNGFTKGALYLGHSAGFTATICLKNEGISGLYIPGTSVLKINICQGDTIVSRSSRGVQFLPQIGGE-AIYLV 179 (337)
T ss_pred EEEEeecCchhhccccccCCccceEEEEEEcCCCeeEEEeCCCchheeeeccCcEEEEeccccceeccccCce-eEEEE
Confidence 34556555432 22223 22345667888888888776666655678999999999975444443 33433 44443
No 171
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.19 E-value=2.1e+02 Score=23.10 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=25.3
Q ss_pred CCEEEEEEeCEEEEEEEcCCCeEEEEEECCCCEE
Q 037035 115 ATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVF 148 (231)
Q Consensus 115 a~Ei~yVl~G~~~v~~v~~~~~~~~~~L~~GDv~ 148 (231)
..+-.++.+|++.+.|++.+|+.......+|+.+
T Consensus 25 ~~~~~~~~~g~v~I~~~~~dG~~~~v~~~~G~sL 58 (143)
T PTZ00490 25 TSRALYSTPGKVKVCVKKRDGTHCDVEVPVGMSL 58 (143)
T ss_pred eeeeeccCCCcEEEEEEcCCCCEEEEEECCCccH
Confidence 3455666899999999998886666677777644
Done!