Query 037036
Match_columns 87
No_of_seqs 110 out of 723
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 1.7E-41 5.7E-46 230.5 7.7 86 1-87 27-112 (122)
2 1whi_A Ribosomal protein L14; 100.0 2.3E-41 7.9E-46 229.8 7.2 86 1-87 27-112 (122)
3 3r8s_K 50S ribosomal protein L 100.0 4.9E-41 1.7E-45 228.2 6.8 86 1-87 27-113 (122)
4 3bbo_M Ribosomal protein L14; 100.0 7.4E-41 2.5E-45 227.1 6.8 85 1-87 27-111 (121)
5 1vq8_K 50S ribosomal protein L 100.0 8.8E-38 3E-42 214.6 7.1 82 1-87 39-122 (132)
6 3j21_J 50S ribosomal protein L 100.0 4.8E-37 1.6E-41 212.9 6.2 81 2-87 49-131 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 9.3E-37 3.2E-41 210.6 6.7 78 5-87 50-127 (137)
8 2qqr_A JMJC domain-containing 65.1 16 0.00055 23.9 5.3 41 6-60 5-45 (118)
9 3r87_A Putative uncharacterize 61.2 18 0.00063 21.9 4.9 62 5-83 68-130 (135)
10 3h9w_A Diguanylate cyclase wit 59.3 18 0.0006 20.3 4.3 28 43-70 71-98 (115)
11 2ftc_K 39S ribosomal protein L 58.5 15 0.00051 23.3 4.1 29 11-42 7-35 (98)
12 1v74_A Colicin D; colicin D - 52.6 25 0.00085 22.8 4.4 33 44-76 59-93 (107)
13 3ck1_A Putative thioesterase; 48.4 26 0.0009 21.3 4.1 8 76-83 125-132 (150)
14 3f1p_A Endothelial PAS domain- 47.2 18 0.00061 20.3 2.9 29 42-70 74-103 (117)
15 3hm0_A Probable thioesterase; 45.9 40 0.0014 21.7 4.9 30 48-83 134-163 (167)
16 3f1p_B ARYL hydrocarbon recept 45.8 19 0.00065 20.4 2.9 28 43-70 79-107 (121)
17 2egj_A Hypothetical protein AQ 44.9 44 0.0015 19.4 5.1 29 48-83 96-124 (128)
18 2xdp_A Lysine-specific demethy 44.7 14 0.00046 24.4 2.3 28 29-60 19-46 (123)
19 1lo7_A 4-hydroxybenzoyl-COA th 42.8 33 0.0011 20.5 3.8 8 76-83 131-138 (141)
20 3mr0_A Sensory box histidine k 41.2 32 0.0011 20.3 3.5 33 42-76 86-118 (142)
21 3icy_A Sensor protein; sensory 39.5 46 0.0016 18.0 4.4 29 42-70 81-109 (118)
22 1n9l_A PHOT-LOV1, putative blu 39.0 36 0.0012 19.2 3.4 27 44-70 73-99 (109)
23 4i4j_A ACP-polyene thioesteras 37.3 53 0.0018 20.6 4.3 30 48-83 110-142 (159)
24 2pzh_A Hypothetical protein HP 37.3 64 0.0022 19.0 5.1 22 56-83 108-130 (135)
25 2khi_A 30S ribosomal protein S 35.5 67 0.0023 19.8 4.5 35 25-64 26-60 (115)
26 1s5u_A Protein YBGC; structura 35.1 70 0.0024 18.9 4.7 30 48-83 102-132 (138)
27 2khj_A 30S ribosomal protein S 34.1 38 0.0013 20.6 3.1 42 17-63 13-60 (109)
28 2gj3_A Nitrogen fixation regul 34.0 48 0.0016 18.7 3.4 27 44-70 82-108 (120)
29 2w3x_A CALE7; hydrolase, hotdo 33.5 79 0.0027 19.0 4.6 30 48-83 103-135 (147)
30 1njk_A Hypothetical protein YB 33.2 86 0.003 19.3 4.9 31 47-83 116-147 (156)
31 3v2d_T 50S ribosomal protein L 32.7 57 0.0019 22.1 4.0 32 8-42 23-54 (146)
32 3bwz_A Cellulosomal scaffoldin 32.4 20 0.00068 25.3 1.7 16 4-20 13-28 (181)
33 3kcp_B Cellulosome anchoring p 31.8 19 0.00066 25.4 1.5 16 4-20 27-42 (187)
34 2bm3_A Type 2 cohesin, scaffol 31.1 22 0.00074 24.8 1.7 17 4-21 15-31 (166)
35 2fuj_A Conserved hypothetical 30.5 87 0.003 18.5 4.9 29 49-83 105-134 (137)
36 3u28_C H/ACA ribonucleoprotein 30.4 41 0.0014 21.9 2.9 26 51-79 50-77 (114)
37 2hlj_A Hypothetical protein; p 29.6 76 0.0026 19.3 4.0 20 58-83 111-131 (157)
38 2gf6_A Conserved hypothetical 29.2 90 0.0031 18.3 5.6 30 48-83 100-130 (135)
39 2vgl_S AP-2 complex subunit si 29.1 36 0.0012 21.7 2.4 24 57-80 3-26 (142)
40 3r8s_P 50S ribosomal protein L 28.7 57 0.002 21.2 3.3 32 8-42 20-51 (114)
41 3nja_A Probable ggdef family p 28.6 74 0.0025 17.1 4.3 28 43-70 85-112 (125)
42 1tyj_A Cellulosomal scaffoldin 28.0 32 0.0011 24.0 2.1 16 4-20 9-24 (170)
43 2o5u_A Thioesterase; putative 27.7 91 0.0031 18.9 4.1 30 48-83 108-138 (148)
44 1zzo_A RV1677; thioredoxin fol 27.5 55 0.0019 18.8 2.9 21 57-79 103-123 (136)
45 3mea_A SAGA-associated factor 27.3 51 0.0017 22.9 3.1 24 33-58 134-157 (180)
46 3ewk_A Sensor protein; PAS dom 26.4 65 0.0022 20.7 3.4 29 43-71 65-93 (227)
47 2ali_A Hypothetical protein PA 26.4 86 0.003 19.6 3.9 20 58-83 133-153 (158)
48 2eis_A Hypothetical protein TT 26.3 1E+02 0.0035 18.0 4.9 21 59-85 107-127 (133)
49 2k52_A Uncharacterized protein 26.3 96 0.0033 17.6 4.5 33 26-63 2-34 (80)
50 3lhn_A Lipoprotein; structural 26.3 54 0.0019 21.2 2.9 31 51-85 93-125 (126)
51 3k2y_A Uncharacterized protein 26.1 41 0.0014 21.4 2.2 25 53-82 44-68 (109)
52 2hx5_A Hypothetical protein; t 25.9 1E+02 0.0035 18.8 4.1 30 48-83 109-139 (152)
53 2xk0_A Polycomb protein PCL; t 25.6 97 0.0033 18.5 3.7 30 29-63 28-57 (69)
54 2eqn_A Hypothetical protein LO 25.3 41 0.0014 21.1 2.1 25 54-79 50-76 (103)
55 2v3m_A NAF1; ribosomal protein 24.8 65 0.0022 21.1 3.1 27 52-79 55-83 (131)
56 2oaf_A Thioesterase superfamil 24.0 1.3E+02 0.0044 18.3 4.5 30 48-83 113-143 (151)
57 2oiw_A Putative 4-hydroxybenzo 23.9 1.2E+02 0.004 17.9 4.5 30 48-83 95-125 (136)
58 2ey4_C Small nucleolar RNP sim 23.9 42 0.0014 20.3 1.9 20 60-79 36-57 (82)
59 3d72_A Vivid PAS protein VVD; 23.7 1.1E+02 0.0038 17.4 4.4 28 44-71 116-143 (149)
60 2kdk_A ARYL hydrocarbon recept 23.5 96 0.0033 17.0 3.4 25 43-67 80-104 (121)
61 3erw_A Sporulation thiol-disul 22.8 81 0.0028 18.3 3.1 22 57-79 116-137 (145)
62 2xem_A DYNE7, TEBC; biosynthet 22.5 84 0.0029 19.2 3.2 8 76-83 133-140 (150)
63 2hvy_B GAR1, small nucleolar R 22.4 51 0.0018 20.9 2.1 22 57-79 34-57 (104)
64 3luq_A Sensor protein; PAS, hi 22.1 98 0.0033 16.3 3.2 30 43-72 78-107 (114)
65 2zjr_M 50S ribosomal protein L 22.1 43 0.0015 23.2 1.8 31 8-41 28-58 (166)
66 3dml_A Putative uncharacterize 22.0 58 0.002 20.5 2.4 24 55-80 76-99 (116)
67 2gix_A Inward rectifier potass 21.5 43 0.0015 23.4 1.8 26 35-62 15-40 (208)
68 2cye_A TTHA1846, putative thio 21.5 1.3E+02 0.0045 17.5 4.9 19 58-83 105-123 (133)
69 2nuj_A Thioesterase superfamil 21.3 1.6E+02 0.0053 18.3 5.1 20 58-83 131-151 (163)
70 2kuc_A Putative disulphide-iso 21.0 90 0.0031 18.1 3.0 22 57-79 88-109 (130)
71 2ks0_A Uncharacterized protein 20.4 55 0.0019 19.4 1.9 17 51-67 15-31 (71)
72 2fwh_A Thiol:disulfide interch 20.0 43 0.0015 20.2 1.4 23 57-79 93-116 (134)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=1.7e-41 Score=230.54 Aligned_cols=86 Identities=28% Similarity=0.473 Sum_probs=83.7
Q ss_pred CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036 1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE 80 (87)
Q Consensus 1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e 80 (87)
|++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|
T Consensus 27 ~~~rr~a~i-GD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~~~p~GTrI~GpVarE 105 (122)
T 3v2d_O 27 GSNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105 (122)
T ss_dssp TTTCCCBCT-TCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSCBCTH
T ss_pred CCCCcccCC-CCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccchHH
Confidence 467899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCC
Q 037036 81 IDKVEFY 87 (87)
Q Consensus 81 lr~kk~~ 87 (87)
||+++|+
T Consensus 106 lr~~~~~ 112 (122)
T 3v2d_O 106 LREKGFM 112 (122)
T ss_dssp HHHTTCH
T ss_pred HhhCCCc
Confidence 9999984
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=2.3e-41 Score=229.83 Aligned_cols=86 Identities=28% Similarity=0.443 Sum_probs=83.8
Q ss_pred CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036 1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE 80 (87)
Q Consensus 1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e 80 (87)
|++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|
T Consensus 27 g~~~r~a~i-GD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarE 105 (122)
T 1whi_A 27 GSGRRYANI-GDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARE 105 (122)
T ss_dssp STTCCCBCT-TCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCSSCEEEEECTTSCBSSSCBCSCBCTH
T ss_pred CCccccccc-CeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeCCceEEEECCCCCEeeeEEEccchHH
Confidence 578899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCC
Q 037036 81 IDKVEFY 87 (87)
Q Consensus 81 lr~kk~~ 87 (87)
||+++|+
T Consensus 106 lr~k~~~ 112 (122)
T 1whi_A 106 LRDKDFM 112 (122)
T ss_dssp HHHTTCH
T ss_pred HhhcCCc
Confidence 9999884
No 3
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=4.9e-41 Score=228.24 Aligned_cols=86 Identities=28% Similarity=0.487 Sum_probs=83.5
Q ss_pred CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCC-CCeeeeEEeccchh
Q 037036 1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQK-EKFEGNSSFWCGRP 79 (87)
Q Consensus 1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~-~~p~GtRI~Gpv~~ 79 (87)
|++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++ ++|+|||||||||+
T Consensus 27 g~~r~~a~i-GD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~~g~p~GTrI~GpVar 105 (122)
T 3r8s_K 27 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTR 105 (122)
T ss_dssp SSSCCCBCT-TCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEESSCEEEEEETTTEEESCSCBCSCCCG
T ss_pred CCCCCcccC-CCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcCCceEEEEeCCCCCEeeeEEEccccH
Confidence 467899999 9999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhcccCC
Q 037036 80 EIDKVEFY 87 (87)
Q Consensus 80 elr~kk~~ 87 (87)
|||+++|+
T Consensus 106 ElR~~~~~ 113 (122)
T 3r8s_K 106 ELRSEKFM 113 (122)
T ss_dssp GGGSGGGH
T ss_pred HHhHcCCc
Confidence 99999884
No 4
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7.4e-41 Score=227.10 Aligned_cols=85 Identities=47% Similarity=0.755 Sum_probs=82.6
Q ss_pred CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036 1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE 80 (87)
Q Consensus 1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e 80 (87)
|++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|
T Consensus 27 g~~~r~a~i-GD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarE 105 (121)
T 3bbo_M 27 ASNRRYARI-GDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARE 105 (121)
T ss_dssp SSCCCCCCT-TCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCSSCEEEECCTTSSCSSSCCCSCCCGG
T ss_pred CCCcccccc-CcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeCCceEEEECCCCCEeEeEEEcCcCHH
Confidence 578899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCC
Q 037036 81 IDKVEFY 87 (87)
Q Consensus 81 lr~kk~~ 87 (87)
||+ +|+
T Consensus 106 lr~-~~~ 111 (121)
T 3bbo_M 106 LRQ-KFA 111 (121)
T ss_dssp GTT-TCH
T ss_pred HHh-cch
Confidence 999 874
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=8.8e-38 Score=214.60 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=78.5
Q ss_pred CCCcce--eeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccch
Q 037036 1 ASNRRY--AHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGR 78 (87)
Q Consensus 1 g~~~~~--a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~ 78 (87)
|++++| |++ ||+|++|||++.|++ |||+++||||||+++++|+||++++|||||+||||++++|+|||||||||
T Consensus 39 g~~~r~p~a~i-GD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVa 114 (132)
T 1vq8_K 39 GTKNRLPKAGL-GDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIA 114 (132)
T ss_dssp CCTTCCCEECT-TCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEEC
T ss_pred CcccccCCCcc-CcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCcEEEeCCceEEEECCCCCEeEEEEEcCcC
Confidence 467888 999 999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCC
Q 037036 79 PEIDKVEFY 87 (87)
Q Consensus 79 ~elr~kk~~ 87 (87)
+|||+ +|+
T Consensus 115 rElr~-~~~ 122 (132)
T 1vq8_K 115 REVAQ-RFG 122 (132)
T ss_dssp HHHHH-HSH
T ss_pred HHHHh-ccc
Confidence 99998 773
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.8e-37 Score=212.86 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=76.4
Q ss_pred CCcce--eeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchh
Q 037036 2 SNRRY--AHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRP 79 (87)
Q Consensus 2 ~~~~~--a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~ 79 (87)
+.++| |.| ||+|++|||++.|++ |||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+
T Consensus 49 ~~~r~~~A~i-GD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVar 124 (141)
T 3j21_J 49 TRRRLASAGV-GDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAR 124 (141)
T ss_dssp CTTCCCCBCS-SCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECH
T ss_pred cccccccCCc-CCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccH
Confidence 45664 999 999999999999998 799999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCC
Q 037036 80 EIDKVEFY 87 (87)
Q Consensus 80 elr~kk~~ 87 (87)
|||+ +|+
T Consensus 125 Elr~-~~~ 131 (141)
T 3j21_J 125 EAAE-RWV 131 (141)
T ss_dssp HHHH-HCH
T ss_pred HHHh-hch
Confidence 9998 463
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=9.3e-37 Score=210.58 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=75.5
Q ss_pred ceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhhcc
Q 037036 5 RYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKV 84 (87)
Q Consensus 5 ~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~k 84 (87)
++|.| ||+|++|||++.|++ |||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|||++
T Consensus 50 ~~A~i-GD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~ 125 (137)
T 3u5e_V 50 PAASL-GDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125 (137)
T ss_dssp CEECT-TCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT
T ss_pred ccCCc-CCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH
Confidence 59999 999999999999998 89999999999999999999999999999999999999999999999999999986
Q ss_pred cCC
Q 037036 85 EFY 87 (87)
Q Consensus 85 k~~ 87 (87)
|+
T Consensus 126 -~~ 127 (137)
T 3u5e_V 126 -WP 127 (137)
T ss_dssp -CH
T ss_pred -hh
Confidence 73
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=65.12 E-value=16 Score=23.89 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=28.7
Q ss_pred eeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEE
Q 037036 6 YAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60 (87)
Q Consensus 6 ~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~V 60 (87)
..++ ||.|.+ |-+-|.-++|.|++++.+.- ..+.|+||+.-
T Consensus 5 ~v~v-Gq~V~a---------kh~ngryy~~~V~~~~~~~~----y~V~F~DgS~s 45 (118)
T 2qqr_A 5 SITA-GQKVIS---------KHKNGRFYQCEVVRLTTETF----YEVNFDDGSFS 45 (118)
T ss_dssp CCCT-TCEEEE---------ECTTSSEEEEEEEEEEEEEE----EEEEETTSCEE
T ss_pred eecc-CCEEEE---------ECCCCCEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 4567 999884 12247888999999876543 56788887754
No 9
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=61.21 E-value=18 Score=21.89 Aligned_cols=62 Identities=5% Similarity=-0.012 Sum_probs=32.0
Q ss_pred ceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecC-CCeeEEecCceEEEECCCCCeeeeEEeccchhhhhc
Q 037036 5 RYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRD-NGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 5 ~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~-dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~ 83 (87)
+.+.. ||.|.+...-.... +... .....+.+. ||..+---+-..|.+|.++.|. |+|.++++
T Consensus 68 ~p~~~-gd~v~v~t~v~~~~----~~s~------~~~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~ 130 (135)
T 3r87_A 68 DGVEF-AEICDIRTSFTLDG----KYKT------LWRQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILA 130 (135)
T ss_dssp SCCCT-TCEEEEEEEEEEET----TTEE------EEEEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHH
T ss_pred CcccC-CCEEEEEEEEEEeC----CEEE------EEEEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHH
Confidence 44566 88877776433221 1111 112223333 5544443444566777665554 78888875
No 10
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=59.25 E-value=18 Score=20.32 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=23.7
Q ss_pred ceecCCCeeEEecCceEEEECCCCCeee
Q 037036 43 NLRRDNGIIIAYDDSTTAVIHQKEKFEG 70 (87)
Q Consensus 43 ~~~r~dG~~i~F~~Na~VLl~~~~~p~G 70 (87)
.++++||.+.-+...+.++.+.+|.|.+
T Consensus 71 r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 71 RALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 4668899998999999999999998763
No 11
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=58.46 E-value=15 Score=23.33 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=22.4
Q ss_pred CCEEEEEEEccCCCCCccccCeeEEEEEeeee
Q 037036 11 RNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCT 42 (87)
Q Consensus 11 GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~ 42 (87)
||+|.|.++-.-. =++-|.+.++|+..+.
T Consensus 7 GDtv~V~~~i~g~---k~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 7 GSILRVTTADPYA---SGKISQFLGICIQRSG 35 (98)
T ss_pred CCEEEEEEEECCC---ceEeeeEEEEEEEEEC
Confidence 9999999976622 2467899999998653
No 12
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=52.57 E-value=25 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=25.5
Q ss_pred eecCCCeeEEe--cCceEEEECCCCCeeeeEEecc
Q 037036 44 LRRDNGIIIAY--DDSTTAVIHQKEKFEGNSSFWC 76 (87)
Q Consensus 44 ~~r~dG~~i~F--~~Na~VLl~~~~~p~GtRI~Gp 76 (87)
+++..++.+.| ..|-+|+++.+|+.++-=.+-|
T Consensus 59 YR~~~dskVy~N~~T~~~Viid~~g~FvsGwKl~p 93 (107)
T 1v74_A 59 YRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKINP 93 (107)
T ss_dssp CTTSTTCEEEECTTTCEEEEECTTSCEEEEEECCT
T ss_pred eecCCCcEEEEeCCCCeEEEEcCCCCEEEEEEcCC
Confidence 45556899999 7899999999999876544433
No 13
>3ck1_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.74A {Ralstonia eutropha}
Probab=48.36 E-value=26 Score=21.33 Aligned_cols=8 Identities=0% Similarity=-0.218 Sum_probs=6.1
Q ss_pred cchhhhhc
Q 037036 76 CGRPEIDK 83 (87)
Q Consensus 76 pv~~elr~ 83 (87)
|+|.|+++
T Consensus 125 ~ip~~~~~ 132 (150)
T 3ck1_A 125 PLPDPVRQ 132 (150)
T ss_dssp CCCHHHHH
T ss_pred cCCHHHHH
Confidence 78888765
No 14
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=47.24 E-value=18 Score=20.28 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=23.1
Q ss_pred eceecCCCeeEEecCceEEEECC-CCCeee
Q 037036 42 TNLRRDNGIIIAYDDSTTAVIHQ-KEKFEG 70 (87)
Q Consensus 42 ~~~~r~dG~~i~F~~Na~VLl~~-~~~p~G 70 (87)
..++++||.++-++.++..+.++ .+.|.+
T Consensus 74 ~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 74 YRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 34678999999999999998887 676654
No 15
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae}
Probab=45.93 E-value=40 Score=21.75 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=14.8
Q ss_pred CCeeEEecCceEEEECCCCCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~ 83 (87)
||..+.--+-..|.+|.++.|. |+|.|+++
T Consensus 134 ~g~~~a~a~~~~V~vD~~~rp~------~iP~~~r~ 163 (167)
T 3hm0_A 134 GESMLVTAKVEIALINEEGKPR------RLPKELFS 163 (167)
T ss_dssp TTEEEEEEEEEEEEEETTSCBC------CCCC----
T ss_pred CCEEEEEEEEEEEEECCCCCEe------cCCHHHHH
Confidence 4544433444456777665444 78888875
No 16
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=45.79 E-value=19 Score=20.38 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=22.3
Q ss_pred ceecCCCeeEEecCceEEEECC-CCCeee
Q 037036 43 NLRRDNGIIIAYDDSTTAVIHQ-KEKFEG 70 (87)
Q Consensus 43 ~~~r~dG~~i~F~~Na~VLl~~-~~~p~G 70 (87)
.++++||.++-++.++..+.++ .+.|.+
T Consensus 79 r~~~~dG~~~w~~~~~~~~~~~~~g~~~~ 107 (121)
T 3f1p_B 79 RFRSKNQEWLWMRTSSFTFQNPYSDEIEY 107 (121)
T ss_dssp EEECTTSCEEEEEEEEEEECCTTCCCCCE
T ss_pred EEEecCCCEEEEEEEEEEEECCCCCceeE
Confidence 4678999999999999998887 666643
No 17
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=44.95 E-value=44 Score=19.39 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=15.9
Q ss_pred CCeeEEecCceEEEECCCCCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~ 83 (87)
||..+---+-..|.+ +++.|. |+|.++++
T Consensus 96 ~g~~~a~~~~~~v~~-~~~r~~------~ip~~~~~ 124 (128)
T 2egj_A 96 EDIAVAKANTKHCMV-KNGKIV------SIPKEVLE 124 (128)
T ss_dssp TTEEEEEEEEEEEEE-ETTEEC------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEE-eCCcEe------cCCHHHHH
Confidence 565433333334455 555554 78888775
No 18
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=44.72 E-value=14 Score=24.42 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=21.2
Q ss_pred ccCeeEEEEEeeeeceecCCCeeEEecCceEE
Q 037036 29 VSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60 (87)
Q Consensus 29 kg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~V 60 (87)
-|.-++|.|++.....- ..+.|+||+.-
T Consensus 19 ngryy~~~V~~~~~~~~----y~V~F~DgS~s 46 (123)
T 2xdp_A 19 NTRYYSCRVMAVTSQTF----YEVMFDDGSFS 46 (123)
T ss_dssp CCCCCCCEEEEEEEEEE----EEEEETTSCEE
T ss_pred CCcEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 47888888998876543 66888888776
No 19
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP} SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Probab=42.78 E-value=33 Score=20.46 Aligned_cols=8 Identities=0% Similarity=-0.309 Sum_probs=6.2
Q ss_pred cchhhhhc
Q 037036 76 CGRPEIDK 83 (87)
Q Consensus 76 pv~~elr~ 83 (87)
|+|.++++
T Consensus 131 ~ip~~~~~ 138 (141)
T 1lo7_A 131 EVPADYIE 138 (141)
T ss_dssp CCCHHHHH
T ss_pred cCCHHHHH
Confidence 78888775
No 20
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=41.23 E-value=32 Score=20.32 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=26.0
Q ss_pred eceecCCCeeEEecCceEEEECCCCCeeeeEEecc
Q 037036 42 TNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWC 76 (87)
Q Consensus 42 ~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gp 76 (87)
+.+.++||.+.-+...+.++.+.+|.|.+ +.|.
T Consensus 86 ~r~~~~~G~~~w~~~~~~~~~d~~g~~~~--~~G~ 118 (142)
T 3mr0_A 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGW 118 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE--EEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEE--EEEE
Confidence 44678899988888899999999998863 4554
No 21
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=39.52 E-value=46 Score=17.99 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=23.5
Q ss_pred eceecCCCeeEEecCceEEEECCCCCeee
Q 037036 42 TNLRRDNGIIIAYDDSTTAVIHQKEKFEG 70 (87)
Q Consensus 42 ~~~~r~dG~~i~F~~Na~VLl~~~~~p~G 70 (87)
..+.++||.+.-+...+..+.+.+|.+.|
T Consensus 81 ~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 81 YRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 34668899988888888889999988764
No 22
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=39.00 E-value=36 Score=19.20 Aligned_cols=27 Identities=11% Similarity=0.008 Sum_probs=21.4
Q ss_pred eecCCCeeEEecCceEEEECCCCCeee
Q 037036 44 LRRDNGIIIAYDDSTTAVIHQKEKFEG 70 (87)
Q Consensus 44 ~~r~dG~~i~F~~Na~VLl~~~~~p~G 70 (87)
.+++||..+-.+-+..-+.+.+|.+.+
T Consensus 73 ~~~kdG~~~~~~~~~~pi~d~~G~~~~ 99 (109)
T 1n9l_A 73 NYRKDGTPFWNLLTVTPIKTPDGRVSK 99 (109)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 468999987777778888888888764
No 23
>4i4j_A ACP-polyene thioesterase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: TAR; 2.78A {Streptomyces globisporus}
Probab=37.27 E-value=53 Score=20.61 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=17.8
Q ss_pred CCeeEEecCceEEEECCC---CCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQK---EKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~---~~p~GtRI~Gpv~~elr~ 83 (87)
+|..+---+-..|.+|.+ +.|. |+|.++++
T Consensus 110 ~g~~~a~~~~~~v~vd~~~~~~r~~------~iP~~~~~ 142 (159)
T 4i4j_A 110 GETLVARGRQRIACMRGPNTATVPT------LIPEALAE 142 (159)
T ss_dssp CEEEEEEEEEEEEEEESCSSSCEEC------CCCHHHHH
T ss_pred CCeEEEEEEEEEEEEECCCCCCcEe------cCCHHHHH
Confidence 344433334456777765 4454 88888875
No 24
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane, TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A {Helicobacter pylori}
Probab=37.26 E-value=64 Score=19.02 Aligned_cols=22 Identities=0% Similarity=-0.159 Sum_probs=13.9
Q ss_pred CceEEEEC-CCCCeeeeEEeccchhhhhc
Q 037036 56 DSTTAVIH-QKEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 56 ~Na~VLl~-~~~~p~GtRI~Gpv~~elr~ 83 (87)
.-..|.+| +++.|. |+|.++++
T Consensus 108 ~~~~v~vd~~~~r~~------~ip~~~~~ 130 (135)
T 2pzh_A 108 EIKFGFVNRSTYSPI------AIPKLFKE 130 (135)
T ss_dssp EEEEEEECTTTCCEE------CCCHHHHH
T ss_pred EEEEEEEECCCCcEe------cCCHHHHH
Confidence 33456677 456665 78888765
No 25
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=35.52 E-value=67 Score=19.76 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=26.5
Q ss_pred CCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECC
Q 037036 25 MPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQ 64 (87)
Q Consensus 25 ~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~ 64 (87)
...+.|+++.|.|.+.. ..|.++.++++.-.|+..
T Consensus 26 ~~~~~G~~~~G~V~~v~-----~~G~FV~l~~~~~Glvhi 60 (115)
T 2khi_A 26 KRYPEGTKLTGRVTNLT-----DYGCFVEIEEGVEGLVHV 60 (115)
T ss_dssp CSSCSSCEEEEEEEEEE-----TTEEEEECSTTCEEEEET
T ss_pred hcCCCCCEEEEEEEEEE-----CCEEEEEECCCCEEEEEH
Confidence 35788999999999864 368888888766666653
No 26
>1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1
Probab=35.13 E-value=70 Score=18.85 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=17.1
Q ss_pred CCeeEEecCceEEEECCC-CCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQK-EKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~-~~p~GtRI~Gpv~~elr~ 83 (87)
||..+---+-..|.+|.+ +.|. |+|.++++
T Consensus 102 ~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 132 (138)
T 1s5u_A 102 ENTLLNEAEVLVVCVDPLKMKPR------ALPKSIVA 132 (138)
T ss_dssp TCCEEEEEEEEEEEEETTTTEEC------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEEeCCCCCEe------cCCHHHHH
Confidence 554443334445667754 4454 78888875
No 27
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=34.07 E-value=38 Score=20.63 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=24.6
Q ss_pred EEEccCCC------CCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEEC
Q 037036 17 VIKKAIPK------MPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIH 63 (87)
Q Consensus 17 sVkk~~~~------~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~ 63 (87)
++|.+.+. ...+.|+++.|.|.+.. ..|.++.++++.--||.
T Consensus 13 ~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~-----~~G~fV~l~~~~~Gll~ 60 (109)
T 2khj_A 13 GLVPRGSHMFNNWVALNKKGAIVTGKVTAVD-----AKGATVELADGVEGYLR 60 (109)
T ss_dssp --------CHHHHTTTCCSSSEEEEEEEEEC-----SSCEEEECSTTCBCCBC
T ss_pred chhhcccCHHHHHhhcCCCCCEEEEEEEEEE-----CCeEEEEECCCCEEEEE
Confidence 45655553 35788999999999864 45888888765444443
No 28
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=34.00 E-value=48 Score=18.66 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=21.6
Q ss_pred eecCCCeeEEecCceEEEECCCCCeee
Q 037036 44 LRRDNGIIIAYDDSTTAVIHQKEKFEG 70 (87)
Q Consensus 44 ~~r~dG~~i~F~~Na~VLl~~~~~p~G 70 (87)
.+++||..+-.+-+...+.+.+|.+.|
T Consensus 82 ~~~~dG~~~~~~~~~~pi~~~~g~~~~ 108 (120)
T 2gj3_A 82 NRRKDKTLYLAELTVAPVLNEAGETIY 108 (120)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 568899988788788888888888765
No 29
>2w3x_A CALE7; hydrolase, hotdog fold, thioesterase, enediyne biosynthesis; HET: JEF; 1.75A {Micromonospora echinospora}
Probab=33.46 E-value=79 Score=18.96 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=16.4
Q ss_pred CCeeEEecCceEEEECCC-C--CeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQK-E--KFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~-~--~p~GtRI~Gpv~~elr~ 83 (87)
||..+---+-..|++|.+ + .|. |+|.++++
T Consensus 103 ~g~~~a~~~~~~v~vd~~~~~~r~~------~ip~~~~~ 135 (147)
T 2w3x_A 103 DDLLVARGRQRIACMRGPNGRTEPV------RVPAGLVR 135 (147)
T ss_dssp SEEEEEEEEEEEEEEESSTTSCEEC------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEEECCCCccccc------cCCHHHHH
Confidence 444333334445667754 2 454 78888775
No 30
>1njk_A Hypothetical protein YBAW; structural genomics, thioesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: d.38.1.1
Probab=33.22 E-value=86 Score=19.33 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=18.6
Q ss_pred CCCeeEEecCceEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 47 DNGIIIAYDDSTTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 47 ~dG~~i~F~~Na~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
.||..+---+-..|.+|. .+.|. |+|.++++
T Consensus 116 ~~g~~~a~~~~~~v~vd~~~~r~~------~iP~~~~~ 147 (156)
T 1njk_A 116 PEGQVVADALITFVCIDLKTQKAL------ALEGELRE 147 (156)
T ss_dssp TTTEEEEEEEEEEEEEETTTTEEE------CSSTTTTH
T ss_pred CCCeEEEEEEEEEEEEECCCCccc------CCCHHHHH
Confidence 356544444444566775 35554 88888875
No 31
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=32.73 E-value=57 Score=22.13 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=22.3
Q ss_pred eecCCEEEEEEEccCCCCCccccCeeEEEEEeeee
Q 037036 8 HILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCT 42 (87)
Q Consensus 8 ~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~ 42 (87)
.+ ||+|.|.++-.. +.=++=+.+.++|+.-+.
T Consensus 23 ~~-GDtV~V~~~i~E--G~keRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 23 RP-GDTVRVSYKVKE--GNRTRIQDFEGIVIRIRR 54 (146)
T ss_dssp CT-TCEEEEEEEEEC--SSCEEEEEEEEEEEEEEC
T ss_pred CC-CCEEEEEEEEcc--CCceeeeeEEEEEEEEEC
Confidence 45 999999997532 212245789999998653
No 32
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=32.44 E-value=20 Score=25.25 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=13.1
Q ss_pred cceeeecCCEEEEEEEc
Q 037036 4 RRYAHILRNVFVVVIKK 20 (87)
Q Consensus 4 ~~~a~i~GD~I~vsVkk 20 (87)
+-.|.+ ||+|.++||-
T Consensus 13 Kt~a~V-GdIItATi~v 28 (181)
T 3bwz_A 13 KTTASV-GEIVTASINI 28 (181)
T ss_dssp CSCCCT-TCEEEEEEEE
T ss_pred cccccc-ccEEEEEEEe
Confidence 446888 9999999974
No 33
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=31.82 E-value=19 Score=25.40 Aligned_cols=16 Identities=6% Similarity=0.349 Sum_probs=12.7
Q ss_pred cceeeecCCEEEEEEEc
Q 037036 4 RRYAHILRNVFVVVIKK 20 (87)
Q Consensus 4 ~~~a~i~GD~I~vsVkk 20 (87)
+-.|.+ ||+|+++||-
T Consensus 27 Kt~a~V-GdII~ATIki 42 (187)
T 3kcp_B 27 RNKGEV-GDILIGTVRI 42 (187)
T ss_dssp CSCCCT-TCEEEEEEEE
T ss_pred ccceee-ccEEEEEEEE
Confidence 446788 9999999974
No 34
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=31.13 E-value=22 Score=24.75 Aligned_cols=17 Identities=6% Similarity=0.323 Sum_probs=13.5
Q ss_pred cceeeecCCEEEEEEEcc
Q 037036 4 RRYAHILRNVFVVVIKKA 21 (87)
Q Consensus 4 ~~~a~i~GD~I~vsVkk~ 21 (87)
+-.|.+ ||+|.++||--
T Consensus 15 KT~~~V-GdII~Atv~vn 31 (166)
T 2bm3_A 15 RNKGEV-GDILIGTVRIN 31 (166)
T ss_dssp CSCCCT-TCEEEEEEEEE
T ss_pred Ccceee-CCEEEEEEEEc
Confidence 446788 99999999753
No 35
>2fuj_A Conserved hypothetical protein; structural genomics, conserved hypot protein, hot DOG domain, acyl-COA thioesterase, hydrolase; 1.70A {Xanthomonas campestris PV} SCOP: d.38.1.1
Probab=30.48 E-value=87 Score=18.51 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=10.0
Q ss_pred CeeEEecCceEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 49 GIIIAYDDSTTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 49 G~~i~F~~Na~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
|..+---+-..|.+|. .+.|. |+|.++++
T Consensus 105 g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 134 (137)
T 2fuj_A 105 GVLYSDGNVVVVWIDTQTGKSA------SLPDAVRA 134 (137)
T ss_dssp TCEEEEEEEEEEEESSSCCCC---------------
T ss_pred CeEEEEEEEEEEEEECCCCCcC------CCCHHHHH
Confidence 5443333344566775 45555 77888775
No 36
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=30.40 E-value=41 Score=21.89 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=17.8
Q ss_pred eEEecCceEEEECCCCCeeee--EEeccchh
Q 037036 51 IIAYDDSTTAVIHQKEKFEGN--SSFWCGRP 79 (87)
Q Consensus 51 ~i~F~~Na~VLl~~~~~p~Gt--RI~Gpv~~ 79 (87)
..+| ||.| .+++.+.+|+ .|||||..
T Consensus 50 VP~f--NapV-y~enK~~IGKVdEIFGPin~ 77 (114)
T 3u28_C 50 IPYF--NAPI-YLENKTQVGKVDEILGPLNE 77 (114)
T ss_dssp EECT--TCEE-ECTTCCEEEEEEEEESBTTS
T ss_pred CCCC--CCEe-EccCCccceeEeEEeCCCCc
Confidence 4454 4555 5566679997 79999853
No 37
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Pseudomonas putida} SCOP: d.38.1.1
Probab=29.56 E-value=76 Score=19.29 Aligned_cols=20 Identities=0% Similarity=-0.378 Sum_probs=10.2
Q ss_pred eEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 58 TTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 58 a~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
..|.+|. .+.|. |+|.++++
T Consensus 111 ~~v~vd~~~~r~~------~ip~~~~~ 131 (157)
T 2hlj_A 111 MLLHVDLAGPQSA------PFGHTTVC 131 (157)
T ss_dssp EEEEBCC---CBC------CCCHHHHH
T ss_pred EEEEEECCCCccC------CCCHHHHH
Confidence 3455663 34443 67777664
No 38
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Probab=29.22 E-value=90 Score=18.27 Aligned_cols=30 Identities=17% Similarity=-0.028 Sum_probs=16.8
Q ss_pred CCeeEEecCceEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
||..+---+-..|.+|. .+.|. |+|.++++
T Consensus 100 ~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 130 (135)
T 2gf6_A 100 DGELTTEGYVIQIAINPKIWKST------EMPKEIMD 130 (135)
T ss_dssp TTEEEEEEEEEEEEEETTTTEEC------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEEecccCcee------cCCHHHHH
Confidence 55443333334556665 34554 78888875
No 39
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=29.13 E-value=36 Score=21.74 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=20.1
Q ss_pred ceEEEECCCCCeeeeEEeccchhh
Q 037036 57 STTAVIHQKEKFEGNSSFWCGRPE 80 (87)
Q Consensus 57 Na~VLl~~~~~p~GtRI~Gpv~~e 80 (87)
.|+.++|++|+++=+|-+-|.+.+
T Consensus 3 ~~i~i~~~~Gk~~l~k~y~~~~~~ 26 (142)
T 2vgl_S 3 RFILIQNRAGKTRLAKWYMQFDDD 26 (142)
T ss_dssp EEEEEEETTSCEEEEEECSCCCHH
T ss_pred EEEEEEcCCCCEEEEEeCCCCChh
Confidence 478899999999999999876543
No 40
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=28.68 E-value=57 Score=21.15 Aligned_cols=32 Identities=6% Similarity=0.015 Sum_probs=21.6
Q ss_pred eecCCEEEEEEEccCCCCCccccCeeEEEEEeeee
Q 037036 8 HILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCT 42 (87)
Q Consensus 8 ~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~ 42 (87)
.. ||+|.|.++-... .=++=|.+.++|+.-+.
T Consensus 20 ~~-GDtv~V~~~i~EG--~keRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 20 RP-GDTVEVKVWVVEG--SKKRLQAFEGVVIAIRN 51 (114)
T ss_dssp CT-TCEEEEEEEEEET--TEEEEEEEEEEEEEEEC
T ss_pred CC-CCEEEEEEEEecC--CceeeeeEEEEEEEEEC
Confidence 45 9999999864321 11244689999998653
No 41
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=28.60 E-value=74 Score=17.07 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=22.4
Q ss_pred ceecCCCeeEEecCceEEEECCCCCeee
Q 037036 43 NLRRDNGIIIAYDDSTTAVIHQKEKFEG 70 (87)
Q Consensus 43 ~~~r~dG~~i~F~~Na~VLl~~~~~p~G 70 (87)
.+.+.||...-+...+..+.+.++.+.+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 112 (125)
T 3nja_A 85 RIVRPDGQVRELLERNHIQRQASGQVDH 112 (125)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEECCCCCEEEEEEeeEEEECCCCCEEE
Confidence 4567899888888888888888888764
No 42
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=28.01 E-value=32 Score=23.98 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=13.3
Q ss_pred cceeeecCCEEEEEEEc
Q 037036 4 RRYAHILRNVFVVVIKK 20 (87)
Q Consensus 4 ~~~a~i~GD~I~vsVkk 20 (87)
+-.|.+ ||+|.++|+-
T Consensus 9 Kt~a~V-GdiItATi~v 24 (170)
T 1tyj_A 9 NDKVAV-GDKVTLTINV 24 (170)
T ss_dssp CSEECT-TCEEEEEEEE
T ss_pred ccceee-ccEEEEEEEE
Confidence 456888 9999999974
No 43
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=27.71 E-value=91 Score=18.87 Aligned_cols=30 Identities=7% Similarity=-0.042 Sum_probs=16.3
Q ss_pred CCeeEEecCceEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
||..+---+-..|.+|. .+.|. |+|.|+++
T Consensus 108 ~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 138 (148)
T 2o5u_A 108 QREACAAGRFVHVFVERRSSRPV------AIPQELRD 138 (148)
T ss_dssp CCBCSEEEEEEEEEEETTTCCBC------CCCHHHHH
T ss_pred CceEEEEEEEEEEEEECCCCccc------cCCHHHHH
Confidence 44433333334566664 35554 78888765
No 44
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=27.45 E-value=55 Score=18.77 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=17.1
Q ss_pred ceEEEECCCCCeeeeEEeccchh
Q 037036 57 STTAVIHQKEKFEGNSSFWCGRP 79 (87)
Q Consensus 57 Na~VLl~~~~~p~GtRI~Gpv~~ 79 (87)
.+.+|+|++|..+ +..|+.+.
T Consensus 103 P~~~~id~~g~i~--~~~g~~~~ 123 (136)
T 1zzo_A 103 PAYAFVDPHGNVD--VVRGRMSQ 123 (136)
T ss_dssp SEEEEECTTCCEE--EEESCCCH
T ss_pred ceEEEECCCCCEE--EEecCCCH
Confidence 4789999999988 88887653
No 45
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=27.32 E-value=51 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=17.4
Q ss_pred eEEEEEeeeeceecCCCeeEEecCce
Q 037036 33 FTTLIVCTCTNLRRDNGIIIAYDDST 58 (87)
Q Consensus 33 ~~AvIVrtk~~~~r~dG~~i~F~~Na 58 (87)
++|+|+.+.+. ..+...++|||..
T Consensus 134 Y~A~V~~~p~~--~~~~y~L~FEdde 157 (180)
T 3mea_A 134 YRALIHAPPQR--PQDDYSVLFEDTS 157 (180)
T ss_dssp EEEEEEECCSS--TTCCEEEEEBCTT
T ss_pred eEEEEecCCCC--CCCcEEEEEcCCC
Confidence 57889887642 3366889999874
No 46
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=26.43 E-value=65 Score=20.74 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.4
Q ss_pred ceecCCCeeEEecCceEEEECCCCCeeee
Q 037036 43 NLRRDNGIIIAYDDSTTAVIHQKEKFEGN 71 (87)
Q Consensus 43 ~~~r~dG~~i~F~~Na~VLl~~~~~p~Gt 71 (87)
..+++||..+-.+-+...+.+.+|.+.|.
T Consensus 65 ~~~~~dG~~~~~~~~~~p~~d~~g~~~~~ 93 (227)
T 3ewk_A 65 CNRRKDGTRYWVDSTIVPLMDNAGKPRQY 93 (227)
T ss_dssp EEECSSSCEEEEEEEEEEEECSSSCEEEE
T ss_pred EEEcCCCCEEeeeeEEEEEEcCCCCEEEE
Confidence 35689999988888888899999998764
No 47
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 3qy3_A
Probab=26.39 E-value=86 Score=19.59 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=12.3
Q ss_pred eEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 58 TTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 58 a~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
..|.+|. .+.|. |+|.++++
T Consensus 133 ~~v~vd~~~~rp~------~iP~~~~~ 153 (158)
T 2ali_A 133 KLVWVRHAENRST------PVPDSIRA 153 (158)
T ss_dssp EEEEEEGGGTEEC------CCCHHHHH
T ss_pred EEEEEECCCCccc------CCCHHHHH
Confidence 3455664 34454 78888875
No 48
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national project on protein struc functional analyses; HET: COA; 2.10A {Thermus thermophilus}
Probab=26.34 E-value=1e+02 Score=18.04 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=9.7
Q ss_pred EEEECCCCCeeeeEEeccchhhhhccc
Q 037036 59 TAVIHQKEKFEGNSSFWCGRPEIDKVE 85 (87)
Q Consensus 59 ~VLl~~~~~p~GtRI~Gpv~~elr~kk 85 (87)
.|.+|.++.|. |+|.++++..
T Consensus 107 ~v~vd~~~k~~------~ip~~~~~~~ 127 (133)
T 2eis_A 107 LVAVDERGRPS------PVPPLEGGEA 127 (133)
T ss_dssp EEEBCTTSCBC------CCCCCC----
T ss_pred EEEECCCCCEE------ECCCcCCCCC
Confidence 34555544433 7777777543
No 49
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=26.30 E-value=96 Score=17.62 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=21.4
Q ss_pred CccccCeeEEEEEeeeeceecCCCeeEEecCceEEEEC
Q 037036 26 PLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIH 63 (87)
Q Consensus 26 kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~ 63 (87)
..+.|+++.|.|.+.. ..|.++..+++.--|+.
T Consensus 2 ~~~~G~iv~G~V~~v~-----~~G~fV~l~~~~~Gllh 34 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIE-----KYGAFINLNEQVRGLLR 34 (80)
T ss_dssp CCCTTCEEEEEEEEEE-----TTEEEEEEETTEEEEEC
T ss_pred CCCCCCEEEEEEEEEe-----CCEEEEEECCCCEEEEE
Confidence 3456788888777753 35777777766555554
No 50
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=26.28 E-value=54 Score=21.24 Aligned_cols=31 Identities=3% Similarity=-0.186 Sum_probs=21.4
Q ss_pred eEEecCceEEEECCCCCeeeeEEeccc--hhhhhccc
Q 037036 51 IIAYDDSTTAVIHQKEKFEGNSSFWCG--RPEIDKVE 85 (87)
Q Consensus 51 ~i~F~~Na~VLl~~~~~p~GtRI~Gpv--~~elr~kk 85 (87)
...-++|...+||.+|+|+ .|+. .+.|++++
T Consensus 93 ~y~V~en~L~~Ld~~G~~i----~~~la~~Y~L~K~~ 125 (126)
T 3lhn_A 93 KYLVGENQLLMLDTEGNRI----TGGLAEHYILKKKG 125 (126)
T ss_dssp EEEEETTEEEEBCTTSCBC----CSTTGGGGEEEETT
T ss_pred eEEEcCCEEEEECCCCCCC----CCCcccccEEEecc
Confidence 4456889999999886654 6776 56666543
No 51
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=26.14 E-value=41 Score=21.36 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=18.6
Q ss_pred EecCceEEEECCCCCeeeeEEeccchhhhh
Q 037036 53 AYDDSTTAVIHQKEKFEGNSSFWCGRPEID 82 (87)
Q Consensus 53 ~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr 82 (87)
.+|.||+-+.+.++.- .|-||+++.
T Consensus 44 ~yD~nAI~V~~~~g~k-----vGYvPr~~a 68 (109)
T 3k2y_A 44 QYDDNAISVWTLQHAK-----LGYIARYQN 68 (109)
T ss_dssp SSCTTCEEEECTTCCE-----EEEECGGGH
T ss_pred cCChhHEEEEeCCCCE-----EEEecHHHH
Confidence 4899999999887755 456776643
No 52
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase fold, structura genomics, joint center for structural genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP: d.38.1.1
Probab=25.87 E-value=1e+02 Score=18.78 Aligned_cols=30 Identities=17% Similarity=-0.007 Sum_probs=15.9
Q ss_pred CCeeEEecCceEEEECC-CCCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQ-KEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~-~~~p~GtRI~Gpv~~elr~ 83 (87)
+|..+---.-..|++|. .+.|. |+|.++++
T Consensus 109 ~g~~~a~~~~~~v~vd~~~~r~~------~iP~~~~~ 139 (152)
T 2hx5_A 109 EEQIAAHALIRHLAINAQTRHRC------ALPEGIDR 139 (152)
T ss_dssp TTEEEEEEEEEEECEETTTCCBC------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEEeCCCCeEe------cCCHHHHH
Confidence 45433333334456664 35553 77887764
No 53
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=25.57 E-value=97 Score=18.49 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=21.5
Q ss_pred ccCeeEEEEEeeeeceecCCCeeEEecCceEEEEC
Q 037036 29 VSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIH 63 (87)
Q Consensus 29 kg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~ 63 (87)
-|.-+-|-||.+. +.-+.|+|+||+-.-..
T Consensus 28 DG~fYLGtIVd~~-----~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 28 DGRFYLGTIIDQT-----SDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp TSCEEEEEEEEEC-----SSCEEEEETTCCEEEEC
T ss_pred CCCEEEEEEEecC-----CceEEEEecCCcceeee
Confidence 4667777776543 45588999999976654
No 54
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.29 E-value=41 Score=21.07 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=17.9
Q ss_pred ecCceEEEECCCCCeeee--EEeccchh
Q 037036 54 YDDSTTAVIHQKEKFEGN--SSFWCGRP 79 (87)
Q Consensus 54 F~~Na~VLl~~~~~p~Gt--RI~Gpv~~ 79 (87)
.+.|+.+. +++.+++|. .|||||..
T Consensus 50 l~~~s~l~-~edk~~IGkV~EiFGpV~~ 76 (103)
T 2eqn_A 50 VNEETVIF-KSDRQAAGKIFEIFGPVAH 76 (103)
T ss_dssp CCTTCEEE-CTTSBEEEEEEEEESCSSS
T ss_pred CcCCCEEE-ecCCcEEEEEEEEECCCCC
Confidence 45566654 566799997 68999854
No 55
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=24.79 E-value=65 Score=21.08 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=19.8
Q ss_pred EEecCceEEEECCCCCeeee--EEeccchh
Q 037036 52 IAYDDSTTAVIHQKEKFEGN--SSFWCGRP 79 (87)
Q Consensus 52 i~F~~Na~VLl~~~~~p~Gt--RI~Gpv~~ 79 (87)
--++.||++-+ ++..++|. .|||||..
T Consensus 55 ~vl~~~s~l~l-edr~~IGkV~EiFGpV~~ 83 (131)
T 2v3m_A 55 RVLKEGSIFCL-EDRTLIGMLTEVFGPLQN 83 (131)
T ss_dssp CCCCTTCEEEE-TTCCEEEECCEEESCSSS
T ss_pred cccCCCCEEEe-cCCcEEEEEEEEeCCCCC
Confidence 35677777765 55799997 79999853
No 56
>2oaf_A Thioesterase superfamily; YP_508616.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: CIT PGE; 2.00A {Jannaschia SP} SCOP: d.38.1.1
Probab=24.00 E-value=1.3e+02 Score=18.28 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=15.8
Q ss_pred CCeeEEecCceEEEECCC-CCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQK-EKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~-~~p~GtRI~Gpv~~elr~ 83 (87)
||..+---+-..|.+|.+ +.|. |+|.++++
T Consensus 113 ~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 143 (151)
T 2oaf_A 113 DGVTCFVGAFTCVFTIADQFKSQ------PAPDHLRA 143 (151)
T ss_dssp TTEEEEEEEEEEEEEEGGGTEEE------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEEcCCCCccc------CCCHHHHH
Confidence 454333333344556643 4443 78888765
No 57
>2oiw_A Putative 4-hydroxybenzoyl-COA thioesterase; structural genomics, protein structure initiative, midwest center for structu genomics; 2.00A {Geobacillus stearothermophilus} SCOP: d.38.1.1
Probab=23.92 E-value=1.2e+02 Score=17.86 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=16.3
Q ss_pred CCeeEEecCceEEEECCC-CCeeeeEEeccchhhhhc
Q 037036 48 NGIIIAYDDSTTAVIHQK-EKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 48 dG~~i~F~~Na~VLl~~~-~~p~GtRI~Gpv~~elr~ 83 (87)
+|..+---+-..|.+|.+ +.|. |+|.++++
T Consensus 95 ~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 125 (136)
T 2oiw_A 95 NGVVCAKGRSVYVNFNFDTGRPE------PIPDDIRV 125 (136)
T ss_dssp TTEEEEEEEEEEEEEETTTTEEC------CCCHHHHH
T ss_pred CCEEEEEEEEEEEEEECCCCccc------cCCHHHHH
Confidence 454333333345566653 4454 78888765
No 58
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=23.89 E-value=42 Score=20.33 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=15.6
Q ss_pred EEECCCCCeeee--EEeccchh
Q 037036 60 AVIHQKEKFEGN--SSFWCGRP 79 (87)
Q Consensus 60 VLl~~~~~p~Gt--RI~Gpv~~ 79 (87)
.+.+++++.+|. .|||||..
T Consensus 36 ~Vy~e~~~~IGkV~dIfGPv~~ 57 (82)
T 2ey4_C 36 RVVDKRLQFVGIVKDVFGPVKM 57 (82)
T ss_dssp EEECTTCCCCEEEEEEEEESSS
T ss_pred EeEcCCCCEeEEEEEEECCCCC
Confidence 457788889997 79999853
No 59
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=23.69 E-value=1.1e+02 Score=17.45 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=22.3
Q ss_pred eecCCCeeEEecCceEEEECCCCCeeee
Q 037036 44 LRRDNGIIIAYDDSTTAVIHQKEKFEGN 71 (87)
Q Consensus 44 ~~r~dG~~i~F~~Na~VLl~~~~~p~Gt 71 (87)
..++||..+-++-++..+.+.+|++.|-
T Consensus 116 ~~~~dG~~~~~~~~~~~i~~~~g~~~~~ 143 (149)
T 3d72_A 116 NFKKNGQRFVNFLTMIPVRDETGEYRYS 143 (149)
T ss_dssp EECTTCCEEEEEEEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEEEEEEEEcCCCCEEEE
Confidence 4578999888888888888888887653
No 60
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=23.45 E-value=96 Score=16.99 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=19.8
Q ss_pred ceecCCCeeEEecCceEEEECCCCC
Q 037036 43 NLRRDNGIIIAYDDSTTAVIHQKEK 67 (87)
Q Consensus 43 ~~~r~dG~~i~F~~Na~VLl~~~~~ 67 (87)
.++++||.++-++.++..+.+.++.
T Consensus 80 r~~~~dG~~~~~~~~~~~~~d~~~~ 104 (121)
T 2kdk_A 80 KFRAKDGSFVTLKSQWFSFTNPDTK 104 (121)
T ss_dssp EEECSSSCEEEEEEEEEEEECCSSS
T ss_pred EEEEcCCCEEEEEEEEEEEECCCCC
Confidence 3578999988888888888887644
No 61
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=22.80 E-value=81 Score=18.31 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=16.9
Q ss_pred ceEEEECCCCCeeeeEEeccchh
Q 037036 57 STTAVIHQKEKFEGNSSFWCGRP 79 (87)
Q Consensus 57 Na~VLl~~~~~p~GtRI~Gpv~~ 79 (87)
-+.+|+|++|..+. +..|..+.
T Consensus 116 P~~~lid~~G~i~~-~~~g~~~~ 137 (145)
T 3erw_A 116 PTSFLLNEKGEIEK-TKIGPMTA 137 (145)
T ss_dssp SEEEEECTTCCEEE-EEESCCCH
T ss_pred CeEEEEcCCCcEEE-EEcCCcCH
Confidence 46799999999887 56676654
No 62
>2xem_A DYNE7, TEBC; biosynthetic protein, polyketide biosynthesis, enediyne anti agent, thioesterase; HET: SSV; 2.10A {Micromonospora chersina} PDB: 2xfl_A
Probab=22.54 E-value=84 Score=19.24 Aligned_cols=8 Identities=13% Similarity=0.082 Sum_probs=5.9
Q ss_pred cchhhhhc
Q 037036 76 CGRPEIDK 83 (87)
Q Consensus 76 pv~~elr~ 83 (87)
|+|.++++
T Consensus 133 ~iP~~~~~ 140 (150)
T 2xem_A 133 EVPAELRR 140 (150)
T ss_dssp CCCHHHHH
T ss_pred cCCHHHHH
Confidence 77888765
No 63
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=22.40 E-value=51 Score=20.93 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=16.5
Q ss_pred ceEEEECCCCCeeee--EEeccchh
Q 037036 57 STTAVIHQKEKFEGN--SSFWCGRP 79 (87)
Q Consensus 57 Na~VLl~~~~~p~Gt--RI~Gpv~~ 79 (87)
||.| .+++.+.+|. .|||||..
T Consensus 34 na~V-y~enk~~IGKV~DIfGPV~~ 57 (104)
T 2hvy_B 34 NDRV-VDKRLQFVGIVKDVFGPVKM 57 (104)
T ss_dssp TCEE-ECTTCCEEEEEEEEEEESSS
T ss_pred CCEe-EcCCCCEeEEEEEEECCCCC
Confidence 4444 7788889997 79999853
No 64
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=22.13 E-value=98 Score=16.26 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=20.9
Q ss_pred ceecCCCeeEEecCceEEEECCCCCeeeeE
Q 037036 43 NLRRDNGIIIAYDDSTTAVIHQKEKFEGNS 72 (87)
Q Consensus 43 ~~~r~dG~~i~F~~Na~VLl~~~~~p~GtR 72 (87)
...+.||....++-++.-+.+.++++.|--
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~ 107 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYEGEGRVGGVV 107 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEEEEEEeECCCCCEEEEE
Confidence 345778887777778888888888877643
No 65
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=22.06 E-value=43 Score=23.19 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=21.0
Q ss_pred eecCCEEEEEEEccCCCCCccccCeeEEEEEeee
Q 037036 8 HILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTC 41 (87)
Q Consensus 8 ~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk 41 (87)
.+ ||+|.|.++-..- .=++=|.|.++|+.-+
T Consensus 28 r~-GDtV~V~vkI~EG--~KeRiQ~FeGVVIarr 58 (166)
T 2zjr_M 28 RP-GDTVRVDTKVREG--NRTRSQAFEGVVIAIN 58 (166)
T ss_dssp SS-SEEEEEECCTTSS--SCCCCEEEECCEEECC
T ss_pred CC-CCEEEEEEEEecC--CeeeecceEEEEEEEe
Confidence 45 9999999864321 1124578999999754
No 66
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=22.01 E-value=58 Score=20.52 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=19.6
Q ss_pred cCceEEEECCCCCeeeeEEeccchhh
Q 037036 55 DDSTTAVIHQKEKFEGNSSFWCGRPE 80 (87)
Q Consensus 55 ~~Na~VLl~~~~~p~GtRI~Gpv~~e 80 (87)
.--+.|+++ +|++++ |+.|-.+.+
T Consensus 76 g~PT~i~f~-~G~ev~-Ri~G~~~~~ 99 (116)
T 3dml_A 76 FTPTFVLMA-GDVESG-RLEGYPGED 99 (116)
T ss_dssp SSSEEEEEE-TTEEEE-EEECCCCHH
T ss_pred CCCEEEEEE-CCEEEe-eecCCCCHH
Confidence 456888888 899998 899988874
No 67
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=21.50 E-value=43 Score=23.41 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=17.9
Q ss_pred EEEEeeeeceecCCCeeEEecCceEEEE
Q 037036 35 TLIVCTCTNLRRDNGIIIAYDDSTTAVI 62 (87)
Q Consensus 35 AvIVrtk~~~~r~dG~~i~F~~Na~VLl 62 (87)
|++.+...+.+|. ..|.|.+||+|-.
T Consensus 15 ~vfakisrP~kRa--~tI~FS~~AVI~~ 40 (208)
T 2gix_A 15 CNVQFINVGEKRN--ETLVFSHNAVIAM 40 (208)
T ss_dssp BCEEEECCCCSCS--CSEEECSCEEEEE
T ss_pred EEEEEecCCcccC--CcEEecCeEEEEE
Confidence 5566666565554 4689999999854
No 68
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=21.50 E-value=1.3e+02 Score=17.50 Aligned_cols=19 Identities=5% Similarity=-0.130 Sum_probs=11.2
Q ss_pred eEEEECCCCCeeeeEEeccchhhhhc
Q 037036 58 TTAVIHQKEKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 58 a~VLl~~~~~p~GtRI~Gpv~~elr~ 83 (87)
..|.+| ++.|. |+|.|+++
T Consensus 105 ~~v~~d-~~~~~------~~p~~~~~ 123 (133)
T 2cye_A 105 VLVWLE-GGRPA------PLPEAIRE 123 (133)
T ss_dssp EEEEEE-TTEEC------CCCHHHHH
T ss_pred EEEEEe-CCCcc------cCCHHHHH
Confidence 345566 44333 78888775
No 69
>2nuj_A Thioesterase superfamily; YP_509914.1, structural genomics, protein structure initiative, joint center for structural G JCSG, hydrolase; 2.00A {Jannaschia} SCOP: d.38.1.1
Probab=21.34 E-value=1.6e+02 Score=18.29 Aligned_cols=20 Identities=0% Similarity=-0.215 Sum_probs=12.4
Q ss_pred eEEEECCC-CCeeeeEEeccchhhhhc
Q 037036 58 TTAVIHQK-EKFEGNSSFWCGRPEIDK 83 (87)
Q Consensus 58 a~VLl~~~-~~p~GtRI~Gpv~~elr~ 83 (87)
..|.+|.+ +.|. |+|.++++
T Consensus 131 ~~v~vd~~~~r~~------~ip~~~~~ 151 (163)
T 2nuj_A 131 VVVLLNRDGSGRY------PIPEAGRA 151 (163)
T ss_dssp EEEEECTTSSSBC------CCCHHHHH
T ss_pred EEEEEECCCCCCc------cCCHHHHH
Confidence 35667753 5554 77887764
No 70
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.00 E-value=90 Score=18.13 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=16.9
Q ss_pred ceEEEECCCCCeeeeEEeccchh
Q 037036 57 STTAVIHQKEKFEGNSSFWCGRP 79 (87)
Q Consensus 57 Na~VLl~~~~~p~GtRI~Gpv~~ 79 (87)
-+.++++++|+++. ++.|..+.
T Consensus 88 Pt~~~~d~~G~~~~-~~~G~~~~ 109 (130)
T 2kuc_A 88 PTLLFINSSGEVVY-RLVGAEDA 109 (130)
T ss_dssp CEEEEECTTSCEEE-EEESCCCH
T ss_pred CEEEEECCCCcEEE-EecCCCCH
Confidence 47888999999887 56777654
No 71
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=20.37 E-value=55 Score=19.39 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=14.8
Q ss_pred eEEecCceEEEECCCCC
Q 037036 51 IIAYDDSTTAVIHQKEK 67 (87)
Q Consensus 51 ~i~F~~Na~VLl~~~~~ 67 (87)
.++||++.++|-..+|.
T Consensus 15 V~sFd~e~i~L~T~~G~ 31 (71)
T 2ks0_A 15 VQSFDPKEILLETIQGV 31 (71)
T ss_dssp EEEECSSEEEEEETTEE
T ss_pred EEEECCCEEEEEeCceE
Confidence 58999999999888765
No 72
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=20.01 E-value=43 Score=20.18 Aligned_cols=23 Identities=4% Similarity=-0.190 Sum_probs=18.9
Q ss_pred ceEEEECCCCCeee-eEEeccchh
Q 037036 57 STTAVIHQKEKFEG-NSSFWCGRP 79 (87)
Q Consensus 57 Na~VLl~~~~~p~G-tRI~Gpv~~ 79 (87)
-+.+++|++|+++. .|..|..+.
T Consensus 93 Pt~~~~d~~G~~v~~~~~~G~~~~ 116 (134)
T 2fwh_A 93 PTILFFDGQGQEHPQARVTGFMDA 116 (134)
T ss_dssp SEEEEECTTSCBCGGGCBCSCCCH
T ss_pred CEEEEECCCCCEeeeeeeeeccCH
Confidence 47889999999985 688898764
Done!