RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 037036
         (87 letters)



>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
          thermophilus [TaxId: 274]}
          Length = 122

 Score = 45.1 bits (107), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          SN +YA +  +V V  +K+AIP+  ++  DV   ++V T   ++R +G  I +DD+   +
Sbjct: 28 SNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVI 86

Query: 62 IHQKEKFEGNSSF 74
          I+ + +  G   F
Sbjct: 87 INNQLEPRGTRVF 99


>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia
          coli [TaxId: 562]}
          Length = 121

 Score = 44.8 bits (106), Expect = 4e-08
 Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   +
Sbjct: 27 SHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVL 85

Query: 62 IHQKEK 67
          ++   +
Sbjct: 86 LNNNSE 91


>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score = 34.4 bits (79), Expect = 4e-04
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 12  NVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEG 70
           +   V + K  P+M      V   ++V     +RR +G  + ++D+   ++ + E   G
Sbjct: 51  DKITVSVTKGTPEMR---RQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRG 106


>d1iwpb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 184

 Score = 25.2 bits (55), Expect = 0.93
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 49  GIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVEFY 87
           GI I      T VIHQ++    ++     +  +  +E Y
Sbjct: 84  GIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLETY 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,814
Number of extensions: 12877
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)