BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037037
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/438 (48%), Positives = 271/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNFA E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 271/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCI--GAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF+ E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/438 (48%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ LFQ+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +P IGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NAKP + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/438 (48%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 7 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 66
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ LFQ+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 67 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 126
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 127 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 186
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +P IGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 187 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 245
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 246 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 305
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 306 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 362
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NAKP + P +YLRL L
Sbjct: 363 LSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLL 422
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 423 QKSNFNIFKKFVLKMHAD 440
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP G+LRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA +N LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 269/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+L F E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 269/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGV VD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ L Q+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 270/438 (61%), Gaps = 10/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YVPVYVMLPLGV+N+ DPDGL +QL L++ VDGVMVD WGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDWR 70
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y+ LFQ+V E L LQ +MSFH+CGGNVGD V IP+P WV +IG N IF+T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D E + GRTA+E+Y DYM+SFR +F ++G+I + VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+YL + + A GH W PD+AG YN P TGFF
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L++HGD++L A AF G + K+SG HWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I L ++ A+LNF E+ E+ S+A + P L+ QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD---SEQPSDAKSGPQELVQQV 366
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPL----SDPDGRHFLSFSYLRLGLGLX 676
++ W VA EN LP +D YN+I+ NA+P + P +YLRL L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 677 XXXXXXXXXXXVKRMHGE 694
V +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/442 (47%), Positives = 266/442 (60%), Gaps = 10/442 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YV VYVMLPL +++ D L QLR L VDGVMVD WWG+VE P+ Y+W+
Sbjct: 9 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 68
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
YK+LF++V + LKLQ +MSFH+CGGNVGD V IP+P WV ++G +P IF+TD G R
Sbjct: 69 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 128
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D + + GR+A+++Y DYM SFR EF GVI + VGLGP GE+RYP
Sbjct: 129 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYP 188
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P HGW +PGIGEF CYD+YL + + A+ A GH W P++ G YN P T FF
Sbjct: 189 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEW-EFPNDVGQYNDTPERTQFFR 247
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
D G Y GRFFL WYS L+ HGDR+L A F G + K+SG HWWYK SHA
Sbjct: 248 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHA 307
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I LK++ A +NF AE+ E+ S+A++ P+ L+ QV
Sbjct: 308 AELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD---SEQSSQAMSAPEELVQQV 364
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKP----LSDPDGRHFLSFSYLRLGLGLX 676
++A W VA EN LP +D YN IL NA+P S P F+YLRL L
Sbjct: 365 LSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 424
Query: 677 XXXXXXXXXXXVKRMHGEAVLD 698
V RMH D
Sbjct: 425 EGQNYANFKTFVDRMHANLPRD 446
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/442 (47%), Positives = 266/442 (60%), Gaps = 10/442 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YV VYVMLPL +++ D L QLR L VDGVMVD WWG+VE P+ Y+W+
Sbjct: 5 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 64
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
YK+LF++V + LKLQ +MSFH+CGGNVGD V IP+P WV ++G +P IF+TD G R
Sbjct: 65 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 124
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E L+ G+D + + GR+A+++Y DYM SFR +F GVI + VGLGP GELRYP
Sbjct: 125 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYP 184
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P HGW +PGIGEF CYD+YL + + A+ A GH W P++AG YN P T FF
Sbjct: 185 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEW-EFPNDAGQYNDTPERTQFFR 243
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
D G Y GRFFL WYS L+ HGDR+L A F G + K++G HWWYK SHA
Sbjct: 244 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPSHA 303
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAG+YN +RDGY I LK++ A +NF AE+ E+ +A++ P+ L+ QV
Sbjct: 304 AELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD---SEQPPDAMSAPEELVQQV 360
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKP----LSDPDGRHFLSFSYLRLGLGLX 676
++A W V+ EN LP +D YN IL NA+P S P F+YLRL L
Sbjct: 361 LSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 420
Query: 677 XXXXXXXXXXXVKRMHGEAVLD 698
V RMH D
Sbjct: 421 EGQNYVNFKTFVDRMHANLPRD 442
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 267/438 (60%), Gaps = 9/438 (2%)
Query: 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN 322
YV +YVMLPLGV+N D + + +L+ +K+ DGVMVD WWGI+EA P+ Y+W+
Sbjct: 12 YVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWS 71
Query: 323 GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382
Y++LFQ+V + LK+Q +MSFH+CGGNVGD V IP+P W+ +IG NP IF+T+R G R
Sbjct: 72 AYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNR 131
Query: 383 NPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYP 442
N E LS G+D +R+ +GRTALE+Y D+M SFR +F + G I + VG G GELRYP
Sbjct: 132 NQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYP 191
Query: 443 SCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFC 502
S P GW +PGIGEFQCYD+Y++ + ++A + G++ W AG+YN P +T FF
Sbjct: 192 SYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFFR 251
Query: 503 DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHA 560
G Y G+FFL WYS L+ HGD+VL A F G I AK+SG HWWY SHA
Sbjct: 252 PNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHA 311
Query: 561 AELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620
AELTAGFYN RDGY I L ++ A LNF E+ E+ +EA + P L+ QV
Sbjct: 312 AELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRD---SEQPAEAKSAPQELVQQV 368
Query: 621 MNAAWDVCTPVASENTLPCHDRVGYNKILDNAKP----LSDPDGRHFLSFSYLRLGLGLX 676
+++ W VA EN LP +D YN++L +P L+ P +YLRL L
Sbjct: 369 LSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLRLSDDLL 428
Query: 677 XXXXXXXXXXXVKRMHGE 694
VK+MH +
Sbjct: 429 QTDNFELFKKFVKKMHAD 446
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 169/394 (42%), Gaps = 44/394 (11%)
Query: 268 VMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKL 327
VM PL IN D KQL+ LK+ V + D WWG VE+ ++W+ YK
Sbjct: 10 VMGPLAKIN------DWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 328 FQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECL 387
V E LK ++S H+CGGNVGDD IPLP W++ G + + F D G N E L
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEAL 122
Query: 388 S--WGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYPSCP 445
S W G+ E+Y + +F +I + + GP GELRYPS
Sbjct: 123 SPLWS------GTGKQYDELYASFAENFAG------YKSIIPKIYLSGGPSGELRYPSYY 170
Query: 446 VKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSF------WARGPDNAGSYNSRPHETG 499
GW YPG G+FQ Y + R A + S W + N G
Sbjct: 171 PAAGWSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDG 230
Query: 500 FFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFE---GTCIGAKLSGFHWWYKT 556
F+ +GG YN YG+ FL+WY VL H + + A F+ G IGAK+SG HW
Sbjct: 231 FYTNGG-YNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNN 289
Query: 557 AS--HAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPD 614
+ H E G+Y+ Y ++ K L F E+ +S P
Sbjct: 290 PAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL----PS 339
Query: 615 GLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKI 648
L+ V + A + EN LP G+ KI
Sbjct: 340 TLVDTVSSIANAKGVRLNGENALPTGGS-GFQKI 372
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 183/429 (42%), Gaps = 60/429 (13%)
Query: 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW 321
P Y+M PL I E+ + + LR K +MVD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQFDF 65
Query: 322 NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGR 381
+ ++ Q V +K+ ++S H+CGGNVGDD +P+P WV + + ++F G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 382 RNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRY 441
N E L+ V+R E+Y + + + D VI+ + + GP GELRY
Sbjct: 125 VNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD------VIAKIELSGGPAGELRY 175
Query: 442 PSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFF 501
PS G YP G+FQ Y ++ R W + GS N G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFR---------LWVL--NKYGSLNEVNKAWGTK 224
Query: 502 ----------CDGGDY--NGY---YGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTC---I 543
DG + NGY YG+ +L WY +L +H + LA AF+ T I
Sbjct: 225 LISELAILPPSDGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPI 284
Query: 544 GAKLSGFHWWYK--TASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLE 601
GAK++G HW Y T H AE AG+ + Y+ ++ K +NF E+
Sbjct: 285 GAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVNFTCLEMTDKG 338
Query: 602 RQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLSDPDGR 661
E+S P L+ + A + + EN L + Y ++ + A
Sbjct: 339 SYPEYSM----PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAF------NY 388
Query: 662 HFLSFSYLR 670
+F F+ LR
Sbjct: 389 NFAGFTLLR 397
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 181/429 (42%), Gaps = 60/429 (13%)
Query: 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW 321
P Y+M PL I E+ + + LR K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 322 NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGR 381
+ ++ Q V +K+ ++S H+CGGNVGDD +P+P WV + + ++F G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 382 RNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRY 441
N E L+ V+R E+Y + + + D VI+ + + GP GELRY
Sbjct: 125 VNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD------VIAKIFLSGGPAGELRY 175
Query: 442 PSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFF 501
PS G YP G+FQ Y ++ R W + GS N G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFR---------LWVL--NKYGSLNEVNKAWGTK 224
Query: 502 ----------CDGGDY--NGY---YGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTC---I 543
DG + NGY YG+ +L WY +L +H + LA AF+ T I
Sbjct: 225 LISELAILPPSDGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPI 284
Query: 544 GAKLSGFHWWYK--TASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLE 601
GAK++G HW Y T H AE AG+ + Y+ ++ K + F E+
Sbjct: 285 GAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKG 338
Query: 602 RQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLSDPDGR 661
E+S P L+ + A + + EN L + Y ++ + A
Sbjct: 339 SYPEYSM----PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAF------NY 388
Query: 662 HFLSFSYLR 670
+F F+ LR
Sbjct: 389 NFAGFTLLR 397
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 181/429 (42%), Gaps = 60/429 (13%)
Query: 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW 321
P Y+M PL I E+ + + LR K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 322 NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGR 381
+ ++ Q V +K+ ++S H+CGGNVGDD +P+P WV + + ++F G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 382 RNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRY 441
N E L+ V+R E+Y + + + D VI+ + + GP GELRY
Sbjct: 125 VNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD------VIAKIYLSGGPAGELRY 175
Query: 442 PSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFF 501
PS G YP G+FQ Y ++ R W + GS N G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFR---------LWVL--NKYGSLNEVNKAWGTK 224
Query: 502 ----------CDGGDY--NGY---YGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTC---I 543
DG + NGY YG+ +L WY +L +H + LA AF+ T I
Sbjct: 225 LISELAILPPSDGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPI 284
Query: 544 GAKLSGFHWWYK--TASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLE 601
GAK++G HW Y T H AE AG+ + Y+ ++ K + F E+
Sbjct: 285 GAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKG 338
Query: 602 RQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLSDPDGR 661
E+S P L+ + A + + EN L + Y ++ + A
Sbjct: 339 SYPEYSM----PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAF------NY 388
Query: 662 HFLSFSYLR 670
+F F+ LR
Sbjct: 389 NFAGFTLLR 397
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 181/429 (42%), Gaps = 60/429 (13%)
Query: 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW 321
P Y+M PL I E+ + + LR K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 322 NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGR 381
+ ++ Q V +K+ ++S H+CGGNVGDD +P+P WV + + ++F G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 382 RNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRY 441
N E L+ V+R E+Y + + + D VI+ + + GP GELRY
Sbjct: 125 VNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD------VIAKIELSGGPAGELRY 175
Query: 442 PSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFF 501
PS G YP G+FQ Y ++ R W + GS N G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFR---------LWVL--NKYGSLNEVNKAWGTK 224
Query: 502 ----------CDGGDY--NGY---YGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTC---I 543
DG + NGY YG+ +L WY +L +H + LA AF+ T I
Sbjct: 225 LISELAILPPSDGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPI 284
Query: 544 GAKLSGFHWWYK--TASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLE 601
GAK++G HW Y T H AE AG+ + Y+ ++ K + F E+
Sbjct: 285 GAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKG 338
Query: 602 RQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLSDPDGR 661
E+S P L+ + A + + EN L + Y ++ + A
Sbjct: 339 SYPEYSM----PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAF------NY 388
Query: 662 HFLSFSYLR 670
+F F+ LR
Sbjct: 389 NFAGFTLLR 397
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 180/429 (41%), Gaps = 60/429 (13%)
Query: 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW 321
P Y+M PL I E+ + + LR K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 322 NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGR 381
+ ++ Q V +K+ ++S H+CGGNVGDD +P+P WV + + ++F G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 382 RNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRY 441
N E L+ V+R E+Y + + + D VI+ + + GP G LRY
Sbjct: 125 VNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD------VIAKIYLSGGPAGALRY 175
Query: 442 PSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFF 501
PS G YP G+FQ Y ++ R W + GS N G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFR---------LWVL--NKYGSLNEVNKAWGTK 224
Query: 502 ----------CDGGDY--NGY---YGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTC---I 543
DG + NGY YG+ +L WY +L +H + LA AF+ T I
Sbjct: 225 LISELAILPPSDGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPI 284
Query: 544 GAKLSGFHWWYK--TASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLE 601
GAK++G HW Y T H AE AG+ + Y+ ++ K + F E+
Sbjct: 285 GAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKG 338
Query: 602 RQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLSDPDGR 661
E+S P L+ + A + + EN L + Y ++ + A
Sbjct: 339 SYPEYSM----PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAF------NY 388
Query: 662 HFLSFSYLR 670
+F F+ LR
Sbjct: 389 NFAGFTLLR 397
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 459 QCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFCDGGDYNG 509
QC L+ N + A E GH + N SY RP+ G G D +G
Sbjct: 91 QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG 141
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 459 QCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFCDGGDYNG 509
QC L+ N + A E GH + N SY RP+ G G D +G
Sbjct: 92 QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG 142
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 459 QCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFCDGGDYNG 509
QC L+ N + A E GH + N SY RP+ G G D +G
Sbjct: 90 QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG 140
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 588 AVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNK 647
+++N+ + ++ T + +E ++ + G ++ +N A C P+ T + Y++
Sbjct: 2071 SIINYDTKKMMTPKIREAITKGYLEDPGFDYETVNRASKACGPLVKWATAQTY----YSE 2126
Query: 648 ILDNAKPLSD 657
ILD KPL +
Sbjct: 2127 ILDRIKPLRE 2136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,134,240
Number of Sequences: 62578
Number of extensions: 847681
Number of successful extensions: 1716
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1619
Number of HSP's gapped (non-prelim): 27
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)