Query 037037
Match_columns 701
No_of_seqs 147 out of 219
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02905 beta-amylase 100.0 8E-272 2E-276 2179.4 64.5 700 1-701 1-702 (702)
2 PLN02705 beta-amylase 100.0 3E-247 6E-252 1982.8 57.9 593 82-698 79-679 (681)
3 PLN02801 beta-amylase 100.0 2E-193 5E-198 1542.7 45.3 432 260-695 12-449 (517)
4 PLN02803 beta-amylase 100.0 9E-193 2E-197 1543.9 49.0 431 259-696 81-515 (548)
5 PLN00197 beta-amylase; Provisi 100.0 8E-193 2E-197 1548.0 45.6 437 257-697 99-542 (573)
6 PLN02161 beta-amylase 100.0 3E-190 6E-195 1518.6 47.0 431 257-694 85-530 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 1E-169 2E-174 1337.8 26.8 390 267-687 1-402 (402)
8 PF05687 DUF822: Plant protein 100.0 2.6E-42 5.6E-47 324.2 12.8 131 77-225 1-133 (150)
9 PF02449 Glyco_hydro_42: Beta- 99.2 2.8E-10 6E-15 119.9 14.0 219 283-550 8-238 (374)
10 PF01301 Glyco_hydro_35: Glyco 98.1 1.2E-05 2.6E-10 84.8 9.2 145 284-478 23-172 (319)
11 PLN03059 beta-galactosidase; P 97.1 0.0049 1.1E-07 73.1 13.7 147 283-478 57-214 (840)
12 COG1874 LacA Beta-galactosidas 97.0 0.0086 1.9E-07 69.8 13.6 145 283-477 28-183 (673)
13 TIGR03356 BGL beta-galactosida 96.9 0.0081 1.8E-07 66.1 11.6 111 281-431 50-164 (427)
14 PF00150 Cellulase: Cellulase 96.4 0.012 2.5E-07 58.1 8.0 103 285-431 21-127 (281)
15 smart00633 Glyco_10 Glycosyl h 95.8 0.73 1.6E-05 47.1 17.6 213 308-628 3-216 (254)
16 PF00232 Glyco_hydro_1: Glycos 95.3 0.054 1.2E-06 59.9 8.0 102 281-422 54-159 (455)
17 PRK09852 cryptic 6-phospho-bet 93.7 0.47 1E-05 53.6 10.8 112 281-431 67-183 (474)
18 KOG0496 Beta-galactosidase [Ca 93.6 0.15 3.3E-06 59.3 7.0 141 284-434 48-203 (649)
19 cd03465 URO-D_like The URO-D _ 92.5 0.74 1.6E-05 47.8 9.6 107 287-406 170-287 (330)
20 PF00331 Glyco_hydro_10: Glyco 92.0 2.2 4.8E-05 45.5 12.5 230 290-628 26-273 (320)
21 PRK15014 6-phospho-beta-glucos 91.8 0.76 1.6E-05 51.9 9.2 112 281-432 65-182 (477)
22 PF14871 GHL6: Hypothetical gl 90.3 4.5 9.7E-05 38.6 11.5 108 289-419 4-121 (132)
23 PRK13511 6-phospho-beta-galact 89.3 1.6 3.4E-05 49.2 8.9 111 280-431 49-163 (469)
24 PF02638 DUF187: Glycosyl hydr 88.3 9.9 0.00021 40.8 13.7 230 281-593 15-258 (311)
25 TIGR01233 lacG 6-phospho-beta- 87.8 1.3 2.8E-05 49.8 7.1 111 280-431 48-162 (467)
26 PLN02814 beta-glucosidase 86.6 3.4 7.4E-05 47.2 9.6 112 281-431 73-188 (504)
27 PRK09589 celA 6-phospho-beta-g 85.0 3.7 8.1E-05 46.5 8.8 112 281-431 63-179 (476)
28 PLN02849 beta-glucosidase 84.9 4.8 0.0001 46.1 9.6 112 281-431 75-190 (503)
29 PRK01060 endonuclease IV; Prov 83.3 2.3 5E-05 43.1 5.8 59 269-339 1-64 (281)
30 PRK02412 aroD 3-dehydroquinate 83.3 9.1 0.0002 39.7 10.1 111 289-439 99-211 (253)
31 PLN02998 beta-glucosidase 82.7 6.3 0.00014 45.1 9.4 112 281-431 78-193 (497)
32 TIGR01463 mtaA_cmuA methyltran 81.7 1.8 3.8E-05 45.7 4.4 59 287-349 182-243 (340)
33 PRK09593 arb 6-phospho-beta-gl 80.1 4.5 9.8E-05 45.8 7.1 112 281-431 69-185 (478)
34 cd00465 URO-D_CIMS_like The UR 80.1 2.8 6E-05 43.1 5.0 62 285-350 144-210 (306)
35 PF00128 Alpha-amylase: Alpha 78.6 4.5 9.7E-05 40.0 5.8 64 283-349 2-80 (316)
36 PRK13111 trpA tryptophan synth 76.7 11 0.00024 39.6 8.3 89 262-381 88-177 (258)
37 COG2723 BglB Beta-glucosidase/ 76.5 52 0.0011 37.9 13.9 148 281-476 55-207 (460)
38 cd03308 CmuA_CmuC_like CmuA_Cm 75.2 4.4 9.5E-05 44.2 5.1 82 263-348 172-277 (378)
39 cd03307 Mta_CmuA_like MtaA_Cmu 74.1 3.2 7E-05 43.8 3.7 55 289-349 175-232 (326)
40 TIGR01093 aroD 3-dehydroquinat 74.1 16 0.00036 37.0 8.5 109 291-440 84-194 (228)
41 cd03311 CIMS_C_terminal_like C 73.0 16 0.00034 38.7 8.4 102 285-388 155-261 (332)
42 PRK11572 copper homeostasis pr 72.9 11 0.00024 40.0 7.1 74 263-347 51-127 (248)
43 PLN02361 alpha-amylase 72.6 11 0.00024 42.0 7.5 67 282-351 26-106 (401)
44 PHA00442 host recBCD nuclease 70.1 4.2 9E-05 34.5 2.7 26 289-333 30-55 (59)
45 cd06592 GH31_glucosidase_KIAA1 70.0 54 0.0012 34.9 11.5 115 282-414 27-151 (303)
46 PF07745 Glyco_hydro_53: Glyco 69.8 9.4 0.0002 41.8 6.0 54 288-346 27-80 (332)
47 PRK13209 L-xylulose 5-phosphat 69.5 9.3 0.0002 38.9 5.7 67 270-341 8-76 (283)
48 PF10566 Glyco_hydro_97: Glyco 68.8 8.6 0.00019 41.1 5.4 105 258-390 81-186 (273)
49 PLN02591 tryptophan synthase 68.4 24 0.00052 37.2 8.4 88 262-380 77-165 (250)
50 PRK06252 methylcobalamin:coenz 68.0 5.2 0.00011 42.2 3.6 55 288-348 183-240 (339)
51 PRK08508 biotin synthase; Prov 67.9 24 0.00053 37.0 8.4 54 283-342 41-95 (279)
52 PF01261 AP_endonuc_2: Xylose 66.9 4.5 9.8E-05 37.9 2.6 47 291-342 1-47 (213)
53 PRK10785 maltodextrin glucosid 66.1 46 0.001 38.8 10.9 111 283-411 177-312 (598)
54 PF01487 DHquinase_I: Type I 3 65.8 40 0.00087 33.8 9.2 122 274-439 63-188 (224)
55 cd00502 DHQase_I Type I 3-dehy 65.0 87 0.0019 31.6 11.4 140 289-471 80-221 (225)
56 smart00642 Aamy Alpha-amylase 65.0 25 0.00053 34.5 7.3 69 281-349 15-97 (166)
57 TIGR00433 bioB biotin syntheta 62.6 19 0.00041 37.1 6.4 55 288-344 123-180 (296)
58 cd04724 Tryptophan_synthase_al 62.5 32 0.0007 35.4 8.0 64 263-345 76-139 (242)
59 PF13653 GDPD_2: Glycerophosph 62.3 6.6 0.00014 29.4 2.2 18 288-305 10-27 (30)
60 PF01208 URO-D: Uroporphyrinog 61.8 5.3 0.00012 41.9 2.3 111 289-414 186-307 (343)
61 PF02724 CDC45: CDC45-like pro 61.5 9.7 0.00021 44.7 4.5 22 437-462 382-403 (622)
62 PRK09875 putative hydrolase; P 60.8 2.2E+02 0.0048 30.7 14.0 68 278-364 27-94 (292)
63 PRK09856 fructoselysine 3-epim 60.2 21 0.00045 36.2 6.1 53 286-345 14-70 (275)
64 PF00290 Trp_syntA: Tryptophan 57.7 21 0.00046 37.9 5.8 90 261-381 85-175 (259)
65 TIGR00542 hxl6Piso_put hexulos 55.9 22 0.00049 36.3 5.5 55 284-341 15-71 (279)
66 PRK13210 putative L-xylulose 5 54.9 29 0.00064 35.1 6.1 52 286-341 17-71 (284)
67 TIGR01515 branching_enzym alph 54.2 28 0.00061 40.7 6.6 60 283-348 154-232 (613)
68 TIGR03234 OH-pyruv-isom hydrox 54.1 28 0.0006 35.0 5.8 43 286-340 15-57 (254)
69 CHL00200 trpA tryptophan synth 52.7 61 0.0013 34.4 8.2 92 262-384 90-182 (263)
70 PRK09989 hypothetical protein; 52.6 30 0.00065 35.1 5.8 43 286-340 16-58 (258)
71 PF03659 Glyco_hydro_71: Glyco 52.1 42 0.00091 37.4 7.2 56 283-345 15-70 (386)
72 cd06593 GH31_xylosidase_YicI Y 52.0 38 0.00083 35.6 6.6 87 281-382 20-114 (308)
73 PLN02389 biotin synthase 50.8 28 0.00061 38.6 5.6 45 288-338 178-229 (379)
74 cd00717 URO-D Uroporphyrinogen 50.3 16 0.00035 38.7 3.6 76 288-378 180-259 (335)
75 PF03932 CutC: CutC family; I 49.8 24 0.00053 36.2 4.6 73 261-344 48-123 (201)
76 TIGR02402 trehalose_TreZ malto 47.9 45 0.00097 38.6 6.8 61 283-348 109-186 (542)
77 cd08627 PI-PLCc_gamma1 Catalyt 47.6 50 0.0011 34.9 6.5 65 278-345 23-98 (229)
78 PRK09441 cytoplasmic alpha-amy 46.4 48 0.001 37.3 6.6 69 282-350 19-109 (479)
79 TIGR00262 trpA tryptophan synt 45.9 65 0.0014 33.8 7.1 64 263-345 87-150 (256)
80 PRK13398 3-deoxy-7-phosphohept 45.9 69 0.0015 34.0 7.3 66 272-340 28-96 (266)
81 PF01229 Glyco_hydro_39: Glyco 45.3 27 0.00058 39.5 4.5 60 285-346 39-108 (486)
82 TIGR01464 hemE uroporphyrinoge 44.0 23 0.0005 37.6 3.6 74 289-378 184-262 (338)
83 PRK09997 hydroxypyruvate isome 43.8 46 0.00099 33.8 5.5 41 286-338 16-56 (258)
84 TIGR02104 pulA_typeI pullulana 43.7 56 0.0012 38.1 6.9 65 284-348 163-256 (605)
85 TIGR02456 treS_nterm trehalose 43.5 65 0.0014 36.9 7.3 66 281-349 24-103 (539)
86 PF01055 Glyco_hydro_31: Glyco 42.9 75 0.0016 34.9 7.3 88 281-381 39-133 (441)
87 PF06336 Corona_5a: Coronaviru 42.5 7.5 0.00016 33.3 -0.2 20 506-525 2-21 (65)
88 KOG3531 Rho guanine nucleotide 40.9 55 0.0012 40.4 6.2 133 84-229 348-486 (1036)
89 PRK12313 glycogen branching en 40.6 73 0.0016 37.3 7.2 63 280-348 165-246 (633)
90 PRK10933 trehalose-6-phosphate 40.1 71 0.0015 37.0 6.9 64 281-348 29-107 (551)
91 PRK15452 putative protease; Pr 40.1 30 0.00064 39.3 3.8 41 261-306 57-97 (443)
92 cd03309 CmuC_like CmuC_like. P 40.0 23 0.0005 38.3 2.9 48 298-348 169-221 (321)
93 PLN02808 alpha-galactosidase 40.0 48 0.001 37.3 5.4 60 283-343 47-118 (386)
94 PRK05222 5-methyltetrahydropte 39.9 69 0.0015 38.8 7.0 125 285-421 581-717 (758)
95 PLN00196 alpha-amylase; Provis 39.9 84 0.0018 35.5 7.3 64 283-349 42-119 (428)
96 PRK00115 hemE uroporphyrinogen 39.8 30 0.00066 37.1 3.7 58 287-350 188-249 (346)
97 PLN02475 5-methyltetrahydropte 39.7 77 0.0017 38.6 7.3 82 285-378 586-673 (766)
98 PLN02433 uroporphyrinogen deca 39.6 27 0.00059 37.6 3.3 57 288-348 182-241 (345)
99 PF14488 DUF4434: Domain of un 38.8 1.2E+02 0.0025 30.1 7.3 59 283-343 18-86 (166)
100 PF01791 DeoC: DeoC/LacD famil 38.8 36 0.00079 34.5 3.9 76 263-341 56-131 (236)
101 PRK13125 trpA tryptophan synth 38.6 1.1E+02 0.0023 31.7 7.2 66 263-345 74-139 (244)
102 PF04187 DUF399: Protein of un 38.2 25 0.00055 35.7 2.7 23 319-341 86-108 (213)
103 PRK09993 C-lysozyme inhibitor; 37.9 24 0.00051 35.4 2.3 28 376-403 107-135 (153)
104 PRK00957 methionine synthase; 37.4 1.4E+02 0.0031 31.5 8.1 80 284-381 143-223 (305)
105 PF09184 PPP4R2: PPP4R2; Inte 37.4 7.7 0.00017 41.6 -1.2 29 664-692 96-125 (288)
106 PF01026 TatD_DNase: TatD rela 37.0 2.1E+02 0.0046 29.3 9.1 47 287-345 16-62 (255)
107 TIGR02631 xylA_Arthro xylose i 36.4 38 0.00083 37.6 3.9 54 284-342 31-88 (382)
108 cd01299 Met_dep_hydrolase_A Me 35.9 1E+02 0.0022 32.2 6.7 64 281-348 116-182 (342)
109 PF02065 Melibiase: Melibiase; 35.7 83 0.0018 35.4 6.3 79 283-365 56-145 (394)
110 PF10255 Paf67: RNA polymerase 35.3 31 0.00067 39.0 3.0 33 320-369 6-39 (404)
111 TIGR00674 dapA dihydrodipicoli 34.9 62 0.0013 33.8 5.0 114 261-399 65-183 (285)
112 PRK03906 mannonate dehydratase 34.0 62 0.0013 36.3 5.0 65 290-363 15-79 (385)
113 PLN02564 6-phosphofructokinase 33.9 1.7E+02 0.0037 34.1 8.5 95 286-429 164-258 (484)
114 cd08597 PI-PLCc_PRIP_metazoa C 33.8 83 0.0018 33.8 5.7 65 278-345 23-98 (260)
115 TIGR00695 uxuA mannonate dehyd 33.6 68 0.0015 36.3 5.3 64 290-362 15-78 (394)
116 TIGR02403 trehalose_treC alpha 33.6 1.2E+02 0.0026 35.1 7.4 65 281-348 23-101 (543)
117 KOG0626 Beta-glucosidase, lact 33.3 1.4E+02 0.0029 35.3 7.7 72 282-365 88-164 (524)
118 cd00958 DhnA Class I fructose- 33.2 60 0.0013 32.6 4.4 55 282-340 73-127 (235)
119 TIGR03699 mena_SCO4550 menaqui 32.9 35 0.00076 36.4 2.9 50 288-342 143-201 (340)
120 cd01310 TatD_DNAse TatD like p 32.9 3.3E+02 0.0071 26.8 9.4 46 287-345 17-62 (251)
121 PRK07094 biotin synthase; Prov 32.8 83 0.0018 33.2 5.5 50 288-342 129-185 (323)
122 COG4130 Predicted sugar epimer 32.7 42 0.00092 35.8 3.3 125 257-406 90-226 (272)
123 PLN02229 alpha-galactosidase 32.6 1.1E+02 0.0023 35.1 6.7 69 283-352 78-160 (427)
124 cd08592 PI-PLCc_gamma Catalyti 32.5 39 0.00084 35.6 3.0 30 279-309 24-53 (229)
125 PRK08508 biotin synthase; Prov 32.4 51 0.0011 34.7 3.9 51 288-344 102-159 (279)
126 cd00598 GH18_chitinase-like Th 32.2 1.5E+02 0.0033 28.6 6.8 57 285-345 90-149 (210)
127 COG2019 AdkA Archaeal adenylat 31.3 76 0.0016 32.8 4.7 89 330-429 74-168 (189)
128 TIGR03551 F420_cofH 7,8-dideme 31.3 41 0.0009 36.2 3.1 58 287-344 140-201 (343)
129 PF05706 CDKN3: Cyclin-depende 30.9 30 0.00064 35.0 1.8 48 284-339 57-104 (168)
130 PRK09505 malS alpha-amylase; R 30.9 1E+02 0.0023 37.0 6.5 66 283-348 228-318 (683)
131 TIGR02884 spore_pdaA delta-lac 30.2 94 0.002 31.6 5.2 82 577-674 142-223 (224)
132 TIGR00423 radical SAM domain p 30.2 50 0.0011 35.0 3.4 56 287-342 106-165 (309)
133 COG2352 Ppc Phosphoenolpyruvat 29.8 44 0.00096 41.1 3.2 67 281-354 532-612 (910)
134 PLN02692 alpha-galactosidase 29.7 87 0.0019 35.7 5.3 58 283-342 71-141 (412)
135 COG2342 Predicted extracellula 29.7 84 0.0018 34.5 5.0 64 285-351 126-197 (300)
136 PRK07360 FO synthase subunit 2 29.6 82 0.0018 34.5 5.0 53 287-344 162-223 (371)
137 KOG3375 Phosphoprotein/predict 29.4 48 0.001 33.4 2.9 12 86-97 113-124 (174)
138 COG3142 CutC Uncharacterized p 29.0 1.2E+02 0.0027 32.4 5.9 76 262-348 50-128 (241)
139 PRK12595 bifunctional 3-deoxy- 28.8 1.4E+02 0.0031 33.1 6.7 69 265-340 119-187 (360)
140 KOG1832 HIV-1 Vpr-binding prot 28.4 32 0.0007 42.7 1.8 7 57-63 1467-1473(1516)
141 PF01183 Glyco_hydro_25: Glyco 28.2 2.2E+02 0.0049 27.5 7.2 109 291-422 12-120 (181)
142 PLN02417 dihydrodipicolinate s 28.0 2.4E+02 0.0052 29.7 7.9 98 282-399 80-180 (280)
143 smart00518 AP2Ec AP endonuclea 27.9 1.5E+02 0.0032 30.2 6.2 55 285-345 10-64 (273)
144 PRK04326 methionine synthase; 27.8 96 0.0021 33.0 5.0 58 285-351 161-219 (330)
145 cd08631 PI-PLCc_delta4 Catalyt 27.7 1E+02 0.0022 33.1 5.2 64 278-344 23-95 (258)
146 KOG3960 Myogenic helix-loop-he 27.6 2.2E+02 0.0048 31.0 7.5 85 80-167 111-205 (284)
147 cd06591 GH31_xylosidase_XylS X 27.4 1.5E+02 0.0033 31.8 6.4 87 281-382 20-114 (319)
148 PRK15108 biotin synthase; Prov 27.2 88 0.0019 34.2 4.7 45 288-338 136-187 (345)
149 COG1082 IolE Sugar phosphate i 26.9 1.2E+02 0.0026 30.4 5.3 55 284-345 14-68 (274)
150 PLN02746 hydroxymethylglutaryl 26.3 2.3E+02 0.0049 31.6 7.6 103 289-417 125-239 (347)
151 PF01136 Peptidase_U32: Peptid 26.1 62 0.0013 32.3 3.1 22 285-306 2-23 (233)
152 PLN02884 6-phosphofructokinase 26.0 2.8E+02 0.0061 31.6 8.4 94 287-429 132-225 (411)
153 TIGR03849 arch_ComA phosphosul 25.8 1.4E+02 0.0031 31.7 5.7 70 285-366 71-140 (237)
154 PLN02705 beta-amylase 25.6 62 0.0014 38.7 3.4 43 454-497 382-430 (681)
155 PRK12677 xylose isomerase; Pro 25.5 1.6E+02 0.0034 32.9 6.3 52 286-342 32-87 (384)
156 cd06598 GH31_transferase_CtsZ 25.5 1.7E+02 0.0037 31.3 6.4 67 280-346 19-94 (317)
157 cd08560 GDPD_EcGlpQ_like_1 Gly 25.4 76 0.0017 35.1 3.9 49 289-341 249-297 (356)
158 cd08212 RuBisCO_large_I Ribulo 25.3 1.3E+02 0.0027 34.8 5.6 53 283-346 224-276 (450)
159 TIGR03700 mena_SCO4494 putativ 25.2 95 0.002 33.7 4.5 53 287-344 149-210 (351)
160 PRK06256 biotin synthase; Vali 25.2 78 0.0017 33.7 3.8 51 288-344 152-209 (336)
161 TIGR03056 bchO_mg_che_rel puta 24.9 2.1E+02 0.0046 27.7 6.5 80 545-629 11-94 (278)
162 cd00019 AP2Ec AP endonuclease 24.9 1.9E+02 0.0042 29.6 6.5 53 285-339 10-63 (279)
163 PF01717 Meth_synt_2: Cobalami 24.8 1.4E+02 0.003 31.7 5.6 86 285-382 154-245 (324)
164 cd08593 PI-PLCc_delta Catalyti 24.5 1.5E+02 0.0032 31.9 5.6 56 279-337 24-85 (257)
165 TIGR02102 pullulan_Gpos pullul 24.5 1.5E+02 0.0032 37.9 6.4 66 283-348 478-581 (1111)
166 cd08629 PI-PLCc_delta1 Catalyt 24.2 1.7E+02 0.0037 31.6 6.0 64 279-345 24-98 (258)
167 cd02809 alpha_hydroxyacid_oxid 24.1 6E+02 0.013 27.0 10.1 130 283-422 127-287 (299)
168 TIGR02529 EutJ ethanolamine ut 24.0 1.8E+02 0.004 29.9 6.1 63 269-343 25-96 (239)
169 PRK14511 maltooligosyl trehalo 24.0 2.7E+02 0.0058 34.8 8.3 67 283-350 18-97 (879)
170 PRK06830 diphosphate--fructose 23.9 3.4E+02 0.0074 31.3 8.6 95 286-429 160-254 (443)
171 COG3693 XynA Beta-1,4-xylanase 23.9 57 0.0012 36.4 2.5 112 308-475 69-183 (345)
172 PRK03170 dihydrodipicolinate s 23.8 1.7E+02 0.0037 30.6 5.9 118 261-403 68-190 (292)
173 PF04476 DUF556: Protein of un 23.8 1.1E+02 0.0023 32.7 4.4 44 291-338 137-183 (235)
174 smart00481 POLIIIAc DNA polyme 23.7 2.6E+02 0.0056 22.8 5.8 44 286-340 16-59 (67)
175 PF02679 ComA: (2R)-phospho-3- 23.5 1.1E+02 0.0025 32.5 4.6 89 261-366 65-153 (244)
176 PRK00009 phosphoenolpyruvate c 23.5 66 0.0014 39.9 3.2 71 305-379 563-641 (911)
177 cd00951 KDGDH 5-dehydro-4-deox 23.3 5.4E+02 0.012 27.2 9.5 114 261-422 67-182 (289)
178 PF03786 UxuA: D-mannonate deh 23.3 68 0.0015 35.8 3.0 51 290-344 16-67 (351)
179 cd03310 CIMS_like CIMS - Cobal 23.2 2.1E+02 0.0045 30.0 6.4 59 285-349 151-211 (321)
180 TIGR01371 met_syn_B12ind 5-met 23.2 2.2E+02 0.0048 34.6 7.4 82 285-377 575-661 (750)
181 cd08625 PI-PLCc_beta3 Catalyti 23.1 1.6E+02 0.0036 31.6 5.7 68 278-346 23-101 (258)
182 PF01902 ATP_bind_4: ATP-bindi 23.1 1.6E+02 0.0036 30.5 5.5 59 576-637 123-181 (218)
183 PLN02251 pyrophosphate-depende 22.9 4.2E+02 0.0091 31.6 9.3 103 280-429 172-274 (568)
184 PRK08673 3-deoxy-7-phosphohept 22.7 1.7E+02 0.0037 32.4 5.8 59 277-340 99-162 (335)
185 PF05226 CHASE2: CHASE2 domain 22.6 6.7E+02 0.014 26.2 9.9 58 283-345 62-119 (310)
186 PTZ00398 phosphoenolpyruvate c 22.5 71 0.0015 39.9 3.2 51 297-354 616-672 (974)
187 cd02876 GH18_SI-CLP Stabilin-1 22.5 1.5E+02 0.0033 31.4 5.3 48 284-333 93-141 (318)
188 PF14851 FAM176: FAM176 family 22.3 1.1E+02 0.0024 30.7 3.9 28 86-118 117-144 (153)
189 PTZ00286 6-phospho-1-fructokin 22.1 4.3E+02 0.0093 30.6 9.0 103 286-439 164-266 (459)
190 cd06602 GH31_MGAM_SI_GAA This 22.0 8.1E+02 0.018 26.7 10.8 92 280-382 19-119 (339)
191 cd08595 PI-PLCc_zeta Catalytic 21.8 79 0.0017 34.0 3.0 31 278-309 23-53 (257)
192 cd06589 GH31 The enzymes of gl 21.8 9.2E+02 0.02 25.1 15.3 177 281-493 20-219 (265)
193 PRK06555 pyrophosphate--fructo 21.8 3.1E+02 0.0068 31.3 7.8 89 284-421 98-186 (403)
194 PF13407 Peripla_BP_4: Peripla 21.6 2.6E+02 0.0055 27.4 6.3 109 282-420 39-151 (257)
195 PRK04302 triosephosphate isome 21.6 2.1E+02 0.0046 29.0 6.0 47 289-345 76-122 (223)
196 cd00945 Aldolase_Class_I Class 21.6 2.2E+02 0.0049 26.7 5.7 73 263-342 48-120 (201)
197 PRK09121 5-methyltetrahydropte 21.3 1.5E+02 0.0032 32.4 5.1 60 285-352 156-216 (339)
198 COG0159 TrpA Tryptophan syntha 21.3 2.5E+02 0.0054 30.4 6.6 89 262-382 93-183 (265)
199 PRK02227 hypothetical protein; 21.3 1.2E+02 0.0026 32.3 4.2 46 289-338 135-183 (238)
200 PF03009 GDPD: Glycerophosphor 21.2 95 0.0021 30.0 3.3 21 289-309 14-34 (256)
201 PRK04175 rpl7ae 50S ribosomal 20.9 2.2E+02 0.0048 27.0 5.5 44 574-631 33-76 (122)
202 PF04854 DUF624: Protein of un 20.8 82 0.0018 26.6 2.4 24 398-421 37-60 (77)
203 cd08594 PI-PLCc_eta Catalytic 20.7 2.2E+02 0.0047 30.2 5.9 66 279-347 24-100 (227)
204 PTZ00445 p36-lilke protein; Pr 20.6 2.1E+02 0.0045 30.4 5.6 62 280-341 24-97 (219)
205 CHL00040 rbcL ribulose-1,5-bis 20.4 1.8E+02 0.0039 33.8 5.7 53 283-345 246-298 (475)
206 COG2301 CitE Citrate lyase bet 20.3 59 0.0013 35.3 1.7 85 198-305 1-87 (283)
No 1
>PLN02905 beta-amylase
Probab=100.00 E-value=7.7e-272 Score=2179.45 Aligned_cols=700 Identities=83% Similarity=1.379 Sum_probs=672.5
Q ss_pred CcchhhhhcCCCCCchhhhccccccccCchhhhccccccccceeecccccCCCCCCCCchhhhHHHHHhhcCCCCCCCCC
Q 037037 1 MATDMQRLIGTSEEDDEEEMDMDVKEEDDDEEENGEKHGRRQVMVGVDVCTAPSSSNNNQFQHQQEIQEQAGTPGGGGVR 80 (701)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (701)
|+|||++|+||||||||||||||||||||+|.+|+++|-.-.-||.+| +.+.++++|..|||||+||||||||+||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (702)
T PLN02905 1 MATDMQKLIGTSEEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMVSVD-GAAVSSSGNDEFMHQQSIQEQVGTPGGGGSR 79 (702)
T ss_pred CcchHHHHhCCCccCchhhhccccccccccchhhhhhccceeeeeecc-cccccCCCchHHHHHHHHHHhcCCCCCCccC
Confidence 899999999999999999999999999999999999999888899987 5667778888999999999999999999999
Q ss_pred CCCChhHHhhhhHHHHhhhHHHHHHHHhhhhcCCCCCCcccchHHHHHHHHHHhCcEECCCCCccCCCCCCCCCCCCCCc
Q 037037 81 RSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGSRTAGGASS 160 (701)
Q Consensus 81 r~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~l~~~~d~n~v~~al~~~ag~~v~~dg~~y~~~~~~~~~~~~~~~ 160 (701)
|+|+||||||||+|||||||||+|||+|||+||||+||+|||+|+||||||+||||+||+||||||++++.+.+.+|+|.
T Consensus 80 ~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~~l~~eag~~v~~dg~~y~~~~~~~~~~~~~~~ 159 (702)
T PLN02905 80 RSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGTRPAGGTSA 159 (702)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccchHHHHHHHHHhcCcEEcCCCCcccccCCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999977776655556665
Q ss_pred -cccccCccccccccCCcccccccccccCCccccccccceeecCCCCCCCCCcccCCCCccccccccccc-cccccCCCc
Q 037037 161 -MVTSSSSHMVSQQTPSTSLRGVSSGYRSSVEYNTCQMKGVFMPTPSPYDLSPIAQSQPSLVEDGREQTE-IQSHIGGPV 238 (701)
Q Consensus 161 -~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (701)
+.+++|||++|+|||++|||.+++|||||++|+.|-...++...+||++.||+.+|+++||+.++++++ .-+||..|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 239 (702)
T PLN02905 160 VAATSSSSHLVSQQTPPPSLRGVSSGYRSSVEYNACRMKGVFVPASSPYDVSPSQSSELVVVMGDRGSQNENHGLIGGSV 239 (702)
T ss_pred ccccccccccccccCCcchhcccccccccccccchhhhccccccCCCccccccCCCCcceeEeecccccccccCCccCcc
Confidence 788999999999999999999999999999999999999999999999999999999999999999888 456775599
Q ss_pred ccccchhhhcCCCCCCCCCCCCCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCc
Q 037037 239 DAVSDKQIADVPPKLPERDFSGTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQD 318 (701)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~q 318 (701)
+|-.++++.|+++..++.+|+++++||||||||||+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~ 319 (702)
T PLN02905 240 DAINSKQILDIPPKLTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQE 319 (702)
T ss_pred cccchhhhhhhhcccccccccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCc
Confidence 99444444499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccC
Q 037037 319 YNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLR 398 (701)
Q Consensus 319 YdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~ 398 (701)
|||+||++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+
T Consensus 320 YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~ 399 (702)
T PLN02905 320 YNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILR 399 (702)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCC
Q 037037 399 GRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGH 478 (701)
Q Consensus 399 GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Gh 478 (701)
||||||||+|||+|||++|++||+++||+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||
T Consensus 400 GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~Gh 479 (702)
T PLN02905 400 GRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGH 479 (702)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeEEeceeeeccCCCC
Q 037037 479 SFWARGPDNAGSYNSRPHETGFFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIGAKLSGFHWWYKTAS 558 (701)
Q Consensus 479 p~WG~gP~nAg~YNs~P~~T~FF~~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~~laaKV~GIHWWY~t~S 558 (701)
|+||.||||||+||++|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+||||||||||+|+|
T Consensus 480 peWG~gP~dAG~YN~~P~~TgFF~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g~~LaaKVaGIHWWY~t~S 559 (702)
T PLN02905 480 LFWARGPDNTGSYNSQPHETGFFCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIAAKLPGVHWWYKTAS 559 (702)
T ss_pred HhhccCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhccccCCCCCCchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCC
Q 037037 559 HAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLP 638 (701)
Q Consensus 559 HAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~ 638 (701)
|||||||||||+++||||.||++|||||+|+|+||||||+|++||...++++|+||+||+||+++||++||+|+|||||+
T Consensus 560 HAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~ 639 (702)
T PLN02905 560 HAAELTAGFYNPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLP 639 (702)
T ss_pred chHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceecccccc
Confidence 99999999999999999999999999999999999999999998422248899999999999999999999999999999
Q ss_pred CCChhhHHHHHHhcCCCCCCCCCccceEEEeeCCcccCCCcchhHHHHHHHHhcCCcccccCC
Q 037037 639 CHDRVGYNKILDNAKPLSDPDGRHFLSFSYLRLGLGLMERENFMEFERFVKRMHGEAVLDLQV 701 (701)
Q Consensus 639 ~~d~~ay~qI~~na~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~ 701 (701)
+||.++|+||++|++++++++..+|++||||||++.||+++||++|++|||+||+++.+|.++
T Consensus 640 r~D~~ay~qI~~na~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~~~~~~~ 702 (702)
T PLN02905 640 CHDRVGYNKILENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEAVLDLQL 702 (702)
T ss_pred ccCHHHHHHHHHHhhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhcccccccCCC
Confidence 999999999999999987777778999999999999999999999999999999999988753
No 2
>PLN02705 beta-amylase
Probab=100.00 E-value=2.6e-247 Score=1982.78 Aligned_cols=593 Identities=56% Similarity=0.972 Sum_probs=575.7
Q ss_pred CCChhHHhhhhHHHHhhhHHHHHHHHhhhhcCCCCCCcccchHHHHHHHHHHhCcEECCCCCccCCCCCCCCCCCCCCcc
Q 037037 82 SRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGSRTAGGASSM 161 (701)
Q Consensus 82 ~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~l~~~~d~n~v~~al~~~ag~~v~~dg~~y~~~~~~~~~~~~~~~~ 161 (701)
+++++||||||+|||||||||+|||||||+||||+||+|||+||||||||+||||+||+||||||++++|++.+.
T Consensus 79 ~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~lp~~~d~n~vl~al~~eagw~v~~dg~~yr~~~~~~~~~~----- 153 (681)
T PLN02705 79 REREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSPQPSHVGS----- 153 (681)
T ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHhcCcEEcCCCCcccCCCCCccccc-----
Confidence 334589999999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred ccccCccccccccCCc--ccccccccccCCccccccccceeecCCCCCCCCCcccCCCCcccccccc-ccc----ccccc
Q 037037 162 VTSSSSHMVSQQTPST--SLRGVSSGYRSSVEYNTCQMKGVFMPTPSPYDLSPIAQSQPSLVEDGRE-QTE----IQSHI 234 (701)
Q Consensus 162 ~~~~s~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~ 234 (701)
|+|+|||||++ +|++|++ .--++||+|+|||| |+||| .|||||||++++ +++ +++||
T Consensus 154 -----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (681)
T PLN02705 154 -----FPVRSVESPLSSSTLKNCAK-----AAIESQQHSVLRID----ESLSP--VSLDSVVIAESDHPGNGRYTSTSPI 217 (681)
T ss_pred -----ccccCccCcchhhhHHHhhh-----hhhcccccchhccc----cccCc--ccccceeeecccccccccccccCcc
Confidence 99999999998 7899994 12388999999999 99999 999999999998 344 78999
Q ss_pred CCCccc-ccchhhhcCCCCCCCCCCCCCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeec
Q 037037 235 GGPVDA-VSDKQIADVPPKLPERDFSGTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEA 313 (701)
Q Consensus 235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~ 313 (701)
+ |++| ++||+++++++.+++++|+++++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~ 296 (681)
T PLN02705 218 T-SVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEG 296 (681)
T ss_pred c-cccccchhhhhhccCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeec
Confidence 9 9999 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCc
Q 037037 314 HTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDK 393 (701)
Q Consensus 314 ~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~ 393 (701)
++|++|||+||++||+|||++|||||||||||||||||||+|+||||+||+++|++|||||||||+|+||+||||||+|+
T Consensus 297 ~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~ 376 (681)
T PLN02705 297 WNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDK 376 (681)
T ss_pred CCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHH
Q 037037 394 ERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKAS 473 (701)
Q Consensus 394 ~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA 473 (701)
+|||+||||||||+|||+|||++|++||++++|+||+|||||||||||||||++.||+||||||||||||||+++||++|
T Consensus 377 ~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA 456 (681)
T PLN02705 377 ERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAA 456 (681)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcccCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeEEeceeeec
Q 037037 474 EARGHSFWARGPDNAGSYNSRPHETGFFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIGAKLSGFHWW 553 (701)
Q Consensus 474 ~~~Ghp~WG~gP~nAg~YNs~P~~T~FF~~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~~laaKV~GIHWW 553 (701)
+++|||+||.||||||+||++|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+|||||||||
T Consensus 457 ~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~~~LsaKVaGIHWW 536 (681)
T PLN02705 457 KSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEETKIIVKIPAVYWW 536 (681)
T ss_pred HHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhccccCCCCCCchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCcccc
Q 037037 554 YKTASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVAS 633 (701)
Q Consensus 554 Y~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaG 633 (701)
|+|+||||||||||||+++||||.||++|||||+|+|+|||+||+|+++ ++.+++|+||+||+||+++||++||+|+|
T Consensus 537 Y~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~--~~~~a~s~PE~LV~QV~~aA~~~Gv~vaG 614 (681)
T PLN02705 537 YKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPN--ENDEALADPEGLSWQVLNSAWDRGLTVAG 614 (681)
T ss_pred CCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCC--CCCccCCCHHHHHHHHHHHHHHcCCceee
Confidence 9999999999999999999999999999999999999999999999998 47889999999999999999999999999
Q ss_pred ccCCCCCChhhHHHHHHhcCCCCCCCCCccceEEEeeCCcccCCCcchhHHHHHHHHhcCCcccc
Q 037037 634 ENTLPCHDRVGYNKILDNAKPLSDPDGRHFLSFSYLRLGLGLMERENFMEFERFVKRMHGEAVLD 698 (701)
Q Consensus 634 ENAL~~~d~~ay~qI~~na~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~ 698 (701)
||||++||.++|+||++|++++++++..+|++||||||++.||+++||++|+.|||+||++++.-
T Consensus 615 ENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~ 679 (681)
T PLN02705 615 ENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIRDK 679 (681)
T ss_pred cccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhccccccc
Confidence 99999999999999999999998888888999999999999999999999999999999988743
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=2.3e-193 Score=1542.73 Aligned_cols=432 Identities=51% Similarity=0.947 Sum_probs=420.6
Q ss_pred CCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEE
Q 037037 260 GTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQ 339 (701)
Q Consensus 260 ~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlq 339 (701)
..++||||||||||+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|||||
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhh
Q 037037 340 VVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDE 419 (701)
Q Consensus 340 vVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~ 419 (701)
||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++
T Consensus 92 ~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 92 AIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD 171 (517)
T ss_pred EEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCCcccCCCCCCCCCCCCCCCCCC
Q 037037 420 FFQNGVISMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETG 499 (701)
Q Consensus 420 ~l~~gvI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Ghp~WG~gP~nAg~YNs~P~~T~ 499 (701)
|+++++|+||+|||||||||||||||+++||+||||||||||||||+++||++|+++|||+||. |||||+||++|++|+
T Consensus 172 ~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t~ 250 (517)
T PLN02801 172 FLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDTG 250 (517)
T ss_pred hccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCCC
Confidence 9987899999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC--ceeEEeceeeeccCCCCChhhhhccccCCCCCCchH
Q 037037 500 FFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGT--CIGAKLSGFHWWYKTASHAAELTAGFYNPCNRDGYA 577 (701)
Q Consensus 500 FF~~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~--~laaKV~GIHWWY~t~SHAAELTAGYYNt~~rDGY~ 577 (701)
||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|+||||||||||+|+||||||||||||+++||||.
T Consensus 251 FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY~ 330 (517)
T PLN02801 251 FFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGYR 330 (517)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccchH
Confidence 999999999999999999999999999999999999999875 899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCCCCChhhHHHHHHhcCCCC-
Q 037037 578 AIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLS- 656 (701)
Q Consensus 578 pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~~~d~~ay~qI~~na~~~~- 656 (701)
|||+|||||+|+|+||||||+|++| +++++|+||+||+||+++||++||+|+|||||+|||+++|+||++|++++.
T Consensus 331 pIa~m~~rh~~~l~FTClEM~D~eq---~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~~ 407 (517)
T PLN02801 331 PIARMLSRHYGILNFTCLEMRDTEQ---PAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNGV 407 (517)
T ss_pred HHHHHHHHcCCeEEEeecccccCCC---CcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhccC
Confidence 9999999999999999999999998 789999999999999999999999999999999999999999999999764
Q ss_pred C---CCCCccceEEEeeCCcccCCCcchhHHHHHHHHhcCCc
Q 037037 657 D---PDGRHFLSFSYLRLGLGLMERENFMEFERFVKRMHGEA 695 (701)
Q Consensus 657 ~---~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 695 (701)
+ +...+|++||||||++.||+++||++|++|||+||++.
T Consensus 408 ~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 449 (517)
T PLN02801 408 NKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQ 449 (517)
T ss_pred CcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhcccc
Confidence 2 22356999999999999999999999999999999864
No 4
>PLN02803 beta-amylase
Probab=100.00 E-value=8.7e-193 Score=1543.90 Aligned_cols=431 Identities=49% Similarity=0.902 Sum_probs=419.6
Q ss_pred CCCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccE
Q 037037 259 SGTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 259 ~~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKl 338 (701)
...++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHh
Q 037037 339 QVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFD 418 (701)
Q Consensus 339 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~ 418 (701)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEEecccCCCCCCCCCCCCCCC-CcCCcceeehhchHHHHHHHHHHHHhhCCcccCC-CCCCCCCCCCCCC
Q 037037 419 EFFQNGVISMVVVGLGPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKNLRKASEARGHSFWAR-GPDNAGSYNSRPH 496 (701)
Q Consensus 419 ~~l~~gvI~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkymlasLk~aA~~~Ghp~WG~-gP~nAg~YNs~P~ 496 (701)
+|++ +||+||+|||||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ ||||||+||++|+
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9998 69999999999999999999999888 9999999999999999999999999999999995 8999999999999
Q ss_pred CCCccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC--ceeEEeceeeeccCCCCChhhhhccccCCCCCC
Q 037037 497 ETGFFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGT--CIGAKLSGFHWWYKTASHAAELTAGFYNPCNRD 574 (701)
Q Consensus 497 ~T~FF~~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~--~laaKV~GIHWWY~t~SHAAELTAGYYNt~~rD 574 (701)
+|+||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+|+||||||||||||+++||
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rd 399 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHD 399 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcc
Confidence 999999989999999999999999999999999999999999865 899999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCCCCChhhHHHHHHhcCC
Q 037037 575 GYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKP 654 (701)
Q Consensus 575 GY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~~~d~~ay~qI~~na~~ 654 (701)
||.||++|||||+|+|+||||||+|++| |++++|+||+||+||+++||++||+|+|||||++||.++|+||++++++
T Consensus 400 GY~~Ia~mf~rh~~~l~FTClEM~D~eq---p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~ 476 (548)
T PLN02803 400 GYLPIARMFSKHGVVLNFTCMEMRDGEQ---PEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRS 476 (548)
T ss_pred cHHHHHHHHHHcCCeEEEEecCcccCCC---CccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcc
Confidence 9999999999999999999999999998 7899999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCccceEEEeeCCcccCCCcchhHHHHHHHHhcCCcc
Q 037037 655 LSDPDGRHFLSFSYLRLGLGLMERENFMEFERFVKRMHGEAV 696 (701)
Q Consensus 655 ~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 696 (701)
+.. .+|++||||||++.||+++||++|++|||+||++..
T Consensus 477 ~~~---~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 515 (548)
T PLN02803 477 DSG---NGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGR 515 (548)
T ss_pred ccc---CceeeeEEecCChHHcChhhHHHHHHHHHHhcCccc
Confidence 532 369999999999999999999999999999998654
No 5
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=7.6e-193 Score=1547.95 Aligned_cols=437 Identities=45% Similarity=0.846 Sum_probs=422.1
Q ss_pred CCCCCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCc
Q 037037 257 DFSGTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKL 336 (701)
Q Consensus 257 ~~~~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GL 336 (701)
.-...++||||||||||+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||
T Consensus 99 ~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GL 178 (573)
T PLN00197 99 TKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGL 178 (573)
T ss_pred ccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCC
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHH
Q 037037 337 KLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVE 416 (701)
Q Consensus 337 KlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~ 416 (701)
|||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||||||+|||+|||++
T Consensus 179 Klq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~ 258 (573)
T PLN00197 179 KVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDN 258 (573)
T ss_pred eEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCcEEEEEecccCCCCCCCCCCCCCCC-CcCCcceeehhchHHHHHHHHHHHHhhCCcccC-CCCCCCCCCCCC
Q 037037 417 FDEFFQNGVISMVVVGLGPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKNLRKASEARGHSFWA-RGPDNAGSYNSR 494 (701)
Q Consensus 417 F~~~l~~gvI~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkymlasLk~aA~~~Ghp~WG-~gP~nAg~YNs~ 494 (701)
|++||+ ++|+||+|||||||||||||||+++| |+||||||||||||||+++||++|+++|||+|| .||||||+||+.
T Consensus 259 F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~ 337 (573)
T PLN00197 259 FKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNNW 337 (573)
T ss_pred HHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCCC
Confidence 999998 59999999999999999999999888 999999999999999999999999999999999 489999999999
Q ss_pred CCCCCccc-cCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--CceeEEeceeeeccCCCCChhhhhccccCCC
Q 037037 495 PHETGFFC-DGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIGAKLSGFHWWYKTASHAAELTAGFYNPC 571 (701)
Q Consensus 495 P~~T~FF~-~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g--~~laaKV~GIHWWY~t~SHAAELTAGYYNt~ 571 (701)
|++|+||+ ++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||||||||||++
T Consensus 338 P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt~ 417 (573)
T PLN00197 338 PEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNTR 417 (573)
T ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccCC
Confidence 99999999 57899999999999999999999999999999999985 6899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCCCCChhhHHHHHHh
Q 037037 572 NRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDN 651 (701)
Q Consensus 572 ~rDGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~~~d~~ay~qI~~n 651 (701)
+||||+||++|||||+|+|+||||||+|++| |++++|+||+||+||+++||++||+|+|||||+|||.++|+||+++
T Consensus 418 ~rDGY~~Ia~mfarh~~~l~FTClEM~D~eq---p~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~ 494 (573)
T PLN00197 418 FRDGYLPIAQMLARHGAIFNFTCIEMRDHEQ---PQDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQA 494 (573)
T ss_pred CcccHHHHHHHHHHcCCeEEEEecCcccCCC---CccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHh
Confidence 9999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred cCCCCC--CCCCccceEEEeeCCcccCCCcchhHHHHHHHHhcCCccc
Q 037037 652 AKPLSD--PDGRHFLSFSYLRLGLGLMERENFMEFERFVKRMHGEAVL 697 (701)
Q Consensus 652 a~~~~~--~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~ 697 (701)
++...+ +...++++||||||++.||+++||++|++|||+||++...
T Consensus 495 ~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~ 542 (573)
T PLN00197 495 SSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDS 542 (573)
T ss_pred cccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCC
Confidence 876542 2346799999999999999999999999999999998763
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=2.7e-190 Score=1518.57 Aligned_cols=431 Identities=37% Similarity=0.739 Sum_probs=416.1
Q ss_pred CCCCCCcccEEEeeccceeecCC----cccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHH
Q 037037 257 DFSGTPYVPVYVMLPLGVINLKC----ELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVS 332 (701)
Q Consensus 257 ~~~~~~~vpVyVMLPLdvV~~~~----~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr 332 (701)
.....++||||||||||+|+.++ +|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||
T Consensus 85 ~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr 164 (531)
T PLN02161 85 VSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLIS 164 (531)
T ss_pred ccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 34457899999999999999764 79999999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHH
Q 037037 333 ELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRS 412 (701)
Q Consensus 333 ~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~S 412 (701)
++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|
T Consensus 165 ~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 244 (531)
T PLN02161 165 EAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLS 244 (531)
T ss_pred HcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecccCCCCCCCCCCCCCCC-CcCCcceeehhchHHHHHHHHHHHHhhCCcccC-CCCCCCCC
Q 037037 413 FRVEFDEFFQNGVISMVVVGLGPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKNLRKASEARGHSFWA-RGPDNAGS 490 (701)
Q Consensus 413 Fr~~F~~~l~~gvI~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkymlasLk~aA~~~Ghp~WG-~gP~nAg~ 490 (701)
||++|++|++ +||+||+|||||||||||||||+++| |+||||||||||||||+++||++|+++|||+|| .||||||.
T Consensus 245 Fr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~ 323 (531)
T PLN02161 245 FSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGC 323 (531)
T ss_pred HHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcc
Confidence 9999999997 69999999999999999999999877 999999999999999999999999999999999 58999999
Q ss_pred CCCCCCCCCcccc-CCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--------CceeEEeceeeeccCCCCChh
Q 037037 491 YNSRPHETGFFCD-GGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--------TCIGAKLSGFHWWYKTASHAA 561 (701)
Q Consensus 491 YNs~P~~T~FF~~-gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g--------~~laaKV~GIHWWY~t~SHAA 561 (701)
||+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++ ++|+||||||||||+|+||||
T Consensus 324 Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaA 403 (531)
T PLN02161 324 YNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPA 403 (531)
T ss_pred cCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchh
Confidence 9999999999996 5789999999999999999999999999999999963 789999999999999999999
Q ss_pred hhhccccCCCCCCchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCCCCC
Q 037037 562 ELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHD 641 (701)
Q Consensus 562 ELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~~~d 641 (701)
||||||||+++||||.|||+|||||+|+|+||||||+|.+| +++++|+||+||+||+++||++||+|+|||||+|||
T Consensus 404 ElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq---~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D 480 (531)
T PLN02161 404 ELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSET---PEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFD 480 (531)
T ss_pred hhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCC---CccccCCHHHHHHHHHHHHHHcCCceeecccccccC
Confidence 99999999999999999999999999999999999999998 788999999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCCccceEEEeeCCcccCCCcchhHHHHHHHHhcCC
Q 037037 642 RVGYNKILDNAKPLSDPDGRHFLSFSYLRLGLGLMERENFMEFERFVKRMHGE 694 (701)
Q Consensus 642 ~~ay~qI~~na~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~ 694 (701)
..+|+||++|++.. +..++++||||||++.||+++||++|++|||+||++
T Consensus 481 ~~~~~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 481 EMGLRQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred hhHHHHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 99999999999633 235799999999999999999999999999999986
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=9.7e-170 Score=1337.75 Aligned_cols=390 Identities=57% Similarity=1.062 Sum_probs=333.5
Q ss_pred EEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 267 YVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 267 yVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
|||||||+|+++++++ +|+++|++||++|||||||||||||||+++|++|||++|++||+|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988775 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcE
Q 037037 347 CGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVI 426 (701)
Q Consensus 347 CGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI 426 (701)
|||||||+|+||||+||++++++| |||||||+|+||+|||| |||+||| ||+|.|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 599
Q ss_pred EEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHH------hhCCcccC-CCCCCCCCCCCCCCCCC
Q 037037 427 SMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASE------ARGHSFWA-RGPDNAGSYNSRPHETG 499 (701)
Q Consensus 427 ~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~------~~Ghp~WG-~gP~nAg~YNs~P~~T~ 499 (701)
+||+|||||||||||||||+++||+||||||||||||||+++||++|+ +++||+|| .+|+++ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999 55689999 589999 999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC---ceeEEeceeeeccC--CCCChhhhhccccCCCCCC
Q 037037 500 FFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGT---CIGAKLSGFHWWYK--TASHAAELTAGFYNPCNRD 574 (701)
Q Consensus 500 FF~~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~---~laaKV~GIHWWY~--t~SHAAELTAGYYNt~~rD 574 (701)
||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 999999999999999999999999999999999999999987 89999999999999 88999999999999
Q ss_pred chHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCCCCChhhHHHHHHhcCC
Q 037037 575 GYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKP 654 (701)
Q Consensus 575 GY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~~~d~~ay~qI~~na~~ 654 (701)
|+||++|||||+|+|+||||||+|.++ .|. .|+||+||+||+++|+++||+|+|||||++||+++|+||+++++.
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~--~p~--~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~ 375 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEE--QPE--YSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG 375 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSG--SCG--GG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCC--CCC--CCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc
Confidence 999999999999999999999999954 233 569999999999999999999999999999999999999999985
Q ss_pred CCCCCCCccceEEEeeCCcccCCCcchhHHHHH
Q 037037 655 LSDPDGRHFLSFSYLRLGLGLMERENFMEFERF 687 (701)
Q Consensus 655 ~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~F 687 (701)
. ++.+||||||++.||+++||.+|++|
T Consensus 376 ~------~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 376 Y------NYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp T------TTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred c------CCCCeEEEccChHhcCcccHHhccCC
Confidence 3 46679999999999999999999998
No 8
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=100.00 E-value=2.6e-42 Score=324.17 Aligned_cols=131 Identities=40% Similarity=0.514 Sum_probs=104.3
Q ss_pred CCCCCCCChhHHhhhhHHHHhhhHHHHHHHHhhhhcCCCCCCcccchHHHHHHHHHHhCcEECCCCCccCCCCCCC--CC
Q 037037 77 GGVRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGS--RT 154 (701)
Q Consensus 77 ~~~~r~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~l~~~~d~n~v~~al~~~ag~~v~~dg~~y~~~~~~~--~~ 154 (701)
|+++|.++||||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+||||||++|+|+ ..
T Consensus 1 ~~~~r~pt~kErEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~~aD~NeVLkALc~eAGw~Ve~DGTtyr~~~~~~~~~~ 80 (150)
T PF05687_consen 1 GSGGRRPTWKERENNKRRERRRRAIAAKIFAGLRAHGNYKLPKHADNNEVLKALCREAGWTVEPDGTTYRKGCKPPEPME 80 (150)
T ss_pred CCCcccccHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHhCCEEEccCCCeeccCCCCCcccc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999988 23
Q ss_pred CCCCCccccccCccccccccCCcccccccccccCCccccccccceeecCCCCCCCCCcccCCCCccccccc
Q 037037 155 AGGASSMVTSSSSHMVSQQTPSTSLRGVSSGYRSSVEYNTCQMKGVFMPTPSPYDLSPIAQSQPSLVEDGR 225 (701)
Q Consensus 155 ~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (701)
..|+|.. .+++|+.. +...+.+|++|+.+..+.++.- ..+|| .++|.+++.+.
T Consensus 81 ~~g~s~~--------~sp~ss~~-~~~~ss~~~sp~~s~~~s~~ss-------~~pSp--~~~d~~~~~~~ 133 (150)
T PF05687_consen 81 IVGSSAS--------ASPCSSYQ-LSPNSSAFPSPVPSYQPSPSSS-------SFPSP--SSLDSINNSSS 133 (150)
T ss_pred ccccCCC--------CCCcCCCc-CCccccCcCCcccccCCCcCCC-------CCCCC--ccccccccccc
Confidence 3344333 34444443 5566778899966666655433 33344 67777766654
No 9
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.17 E-value=2.8e-10 Score=119.93 Aligned_cols=219 Identities=15% Similarity=0.242 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHHcCCceEEE-eeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCch
Q 037037 283 DPDGLLKQLRVLKSINVDGVMV-DCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPH 361 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~ 361 (701)
+.+.++..|+.+|++|+.-|.+ .+-|..+|+ .+++|||+.++++++++++.||||...+.. -..|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~------------~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKVILGTPT------------AAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EEEEEECT------------TTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeEEEEecc------------ccccc
Confidence 3478999999999999999996 899999998 699999999999999999999997544442 25899
Q ss_pred HHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhh-hhcCCcEEEEEecccCCCCCC
Q 037037 362 WVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDE-FFQNGVISMVVVGLGPCGELR 440 (701)
Q Consensus 362 WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~-~l~~gvI~eI~VGLGPaGELR 440 (701)
|+. ++.|++...|+.|.+. +.+.-.-. -.--..|+++++.|..++.. |.+...|..++|.=.|.+.
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~----~~g~~~~~----~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~-- 141 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRR----GFGSRQHY----CPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH-- 141 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBE----ECCCSTT-----HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT--
T ss_pred chh---hhcccccccCCCCCcC----ccCCcccc----chhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC--
Confidence 997 5689999999999762 22211100 02246778887777777754 3344468888885444333
Q ss_pred CCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCC------cccCCCC--CCCCCCCC--CCCCCCccccCCccccc
Q 037037 441 YPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGH------SFWARGP--DNAGSYNS--RPHETGFFCDGGDYNGY 510 (701)
Q Consensus 441 YPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Gh------p~WG~gP--~nAg~YNs--~P~~T~FF~~gG~w~S~ 510 (701)
.||.+.+++.|++..++++. ..||+.- +....+.. +|..+....+.+
T Consensus 142 ------------------~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~----- 198 (374)
T PF02449_consen 142 ------------------RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPA----- 198 (374)
T ss_dssp ------------------S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HH-----
T ss_pred ------------------cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChH-----
Confidence 79999999999999999974 5787531 22233332 454444222211
Q ss_pred cccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeEEecee
Q 037037 511 YGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIGAKLSGF 550 (701)
Q Consensus 511 YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~~laaKV~GI 550 (701)
.-.+|...-+..+.++-..+..+.+++-++.+|..++-+.
T Consensus 199 ~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~ 238 (374)
T PF02449_consen 199 QWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGS 238 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccc
Confidence 1124445556888888888888888888888998888776
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.08 E-value=1.2e-05 Score=84.84 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhH---HHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCc
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGY---KKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLP 360 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY---~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP 360 (701)
++..+..|+++|++|+..|.+-|-|.+.|. .|++|||++- ..+++||++.||+|.+=.-=-.|+ .-.+=-||
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~a----E~~~gG~P 97 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICA----EWDNGGLP 97 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---T----TBGGGG--
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEEEecccceecc----cccchhhh
Confidence 677889999999999999999999999998 5999999985 488999999999954333333444 11122399
Q ss_pred hHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhc--CCcEEEEEecccCCCC
Q 037037 361 HWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQ--NGVISMVVVGLGPCGE 438 (701)
Q Consensus 361 ~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~--~gvI~eI~VGLGPaGE 438 (701)
.|+... +++.+... + ..-++.-+.||+.+....++++- .|.|..||| |
T Consensus 98 ~Wl~~~----~~~~~R~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv------E 147 (319)
T PF01301_consen 98 AWLLRK----PDIRLRTN----D----------------PPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQV------E 147 (319)
T ss_dssp GGGGGS----TTS-SSSS---------------------HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE------S
T ss_pred hhhhcc----cccccccc----c----------------hhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhh------h
Confidence 999753 33433211 1 12356667777777777777662 368999998 1
Q ss_pred CCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCC
Q 037037 439 LRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGH 478 (701)
Q Consensus 439 LRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Gh 478 (701)
=-|-+++. =-.||. .|++.+++.|-
T Consensus 148 NEyg~~~~--------------~~~Y~~-~l~~~~~~~g~ 172 (319)
T PF01301_consen 148 NEYGSYGT--------------DRAYME-ALKDAYRDWGI 172 (319)
T ss_dssp SSGGCTSS---------------HHHHH-HHHHHHHHTT-
T ss_pred hhhCCCcc--------------cHhHHH-HHHHHHHHhhC
Confidence 11113332 225665 77888877764
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=97.15 E-value=0.0049 Score=73.13 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHH---HHHHHhcCccEEEEEeeeccCCCCCCCccccC
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKL---FQMVSELKLKLQVVMSFHECGGNVGDDVCIPL 359 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~L---f~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPL 359 (701)
.++.-+.-|+++|++|.+.|.+-|-|.+-|. .|++|||+|=+.| +++|++.||.+.+=..=.-|+-= -.=-|
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw----~~GGl 131 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW----NFGGF 131 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee----cCCCC
Confidence 4677788999999999999999999999998 5999999998765 67889999998876666666511 00129
Q ss_pred chHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhc--------CCcEEEEEe
Q 037037 360 PHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQ--------NGVISMVVV 431 (701)
Q Consensus 360 P~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~--------~gvI~eI~V 431 (701)
|.|++. +|+|.+ ||--+.|.+.|+.|-+...+.+. .|-|..+||
T Consensus 132 P~WL~~----~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 132 PVWLKY----VPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred chhhhc----CCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 999974 455544 33345666666676666655552 357888888
Q ss_pred cccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCC
Q 037037 432 GLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGH 478 (701)
Q Consensus 432 GLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Gh 478 (701)
|=-|=||... | ---|+--++-|++.|.+.|-
T Consensus 184 ------ENEYGs~~~~----~------~~~d~~Yl~~l~~~~~~~Gi 214 (840)
T PLN03059 184 ------ENEYGPVEWE----I------GAPGKAYTKWAADMAVKLGT 214 (840)
T ss_pred ------cccccceecc----c------CcchHHHHHHHHHHHHHcCC
Confidence 5556666321 1 12356666778888888874
No 12
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0086 Score=69.81 Aligned_cols=145 Identities=18% Similarity=0.317 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHcCCceEEE-eeeeeeeecCCCCcccchhHHHH-HHHHHhcCccEEEEEeeeccCCCCCCCccccCc
Q 037037 283 DPDGLLKQLRVLKSINVDGVMV-DCWWGIVEAHTPQDYNWNGYKKL-FQMVSELKLKLQVVMSFHECGGNVGDDVCIPLP 360 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~qYdWSgY~~L-f~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP 360 (701)
..+.+...|+++|++|+.-|.+ ++-|+..|+ .-++|||+--+.. ++|+.+.||++.. .. |+ +---|
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~vil--~t----~P-----~g~~P 95 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYVIL--RT----GP-----TGAPP 95 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceEEE--ec----CC-----CCCCc
Confidence 3488999999999999999999 999999998 5899999988888 9999999998654 32 11 22379
Q ss_pred hHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCC---chH-HHHHHHHHH----HHHH-HhhhhcCCcEEEEEe
Q 037037 361 HWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGR---TAL-EVYFDYMRS----FRVE-FDEFFQNGVISMVVV 431 (701)
Q Consensus 361 ~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GR---Tpi-q~Y~DFM~S----Fr~~-F~~~l~~gvI~eI~V 431 (701)
.|.. +..|+|..+|..|.+- ..-+| +|. ..|+.+-+- -|+. +.+.. -|...+|
T Consensus 96 ~Wl~---~~~PeiL~~~~~~~~~------------~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~---~v~~w~~ 157 (673)
T COG1874 96 AWLA---KKYPEILAVDENGRVR------------SDGARENICPVSPVYREYLDRILQQIRERLYGNGP---AVITWQN 157 (673)
T ss_pred hHHh---cCChhheEecCCCccc------------CCCcccccccccHHHHHHHHHHHHHHHHHHhccCC---ceeEEEc
Confidence 9997 5679999999996531 11122 111 145554443 5555 44433 3667777
Q ss_pred cccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhC
Q 037037 432 GLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARG 477 (701)
Q Consensus 432 GLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G 477 (701)
.- -|++| -||-+|..+.|+...++.+
T Consensus 158 dn------eY~~~--------------~~~~~~~~~~f~~wLk~~y 183 (673)
T COG1874 158 DN------EYGGH--------------PCYCDYCQAAFRLWLKKGY 183 (673)
T ss_pred cC------ccCCc--------------cccccccHHHHHHHHHhCc
Confidence 76 44444 3888999999998888876
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.87 E-value=0.0081 Score=66.09 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=88.2
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCI 357 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 357 (701)
..+..-.+..|+.||++|++.+-+.|=|--|++.+++++| +..|+++++.+++.||+..|.|. | .
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------f 117 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------W 117 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------C
Confidence 4567888999999999999999999999999998888888 79999999999999999988887 4 3
Q ss_pred cCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 358 PLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 358 PLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
-||.|+.+. -|-.|+ .-++.|.+|.+-..++|.+...- -||.|..+
T Consensus 118 d~P~~l~~~------------gGw~~~----------------~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 118 DLPQALEDR------------GGWLNR----------------DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CccHHHHhc------------CCCCCh----------------HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 499998642 233332 33688888988888999874320 25666654
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.40 E-value=0.012 Score=58.11 Aligned_cols=103 Identities=11% Similarity=0.233 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeee-cCCCC---cccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCc
Q 037037 285 DGLLKQLRVLKSINVDGVMVDCWWGIVE-AHTPQ---DYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLP 360 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDVWWGiVE-~~~P~---qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP 360 (701)
...++.++.||++|+.-|-+.|.|...+ ...+. .--|..++++++.+++.||+| |+.+|.- |
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~------------~ 86 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNA------------P 86 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEES------------T
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccC------------c
Confidence 3789999999999999999999994444 33333 345777888999999999987 7899952 7
Q ss_pred hHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 037037 361 HWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVV 431 (701)
Q Consensus 361 ~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~V 431 (701)
.|.. +..+. ....+..+.|.+|.+.+...|++. ..|.-++|
T Consensus 87 ~w~~------------~~~~~---------------~~~~~~~~~~~~~~~~la~~y~~~---~~v~~~el 127 (281)
T PF00150_consen 87 GWAN------------GGDGY---------------GNNDTAQAWFKSFWRALAKRYKDN---PPVVGWEL 127 (281)
T ss_dssp TCSS------------STSTT---------------TTHHHHHHHHHHHHHHHHHHHTTT---TTTEEEES
T ss_pred cccc------------ccccc---------------ccchhhHHHHHhhhhhhccccCCC---CcEEEEEe
Confidence 7710 00000 011134677888999999988643 34555544
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=95.77 E-value=0.73 Score=47.07 Aligned_cols=213 Identities=17% Similarity=0.230 Sum_probs=121.0
Q ss_pred eeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcce
Q 037037 308 WGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECL 387 (701)
Q Consensus 308 WGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyL 387 (701)
|+.+|+ .+++|||+.-.++++.+++.|++++.-..++.+ -.|.|+....
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~-------------------- 51 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS-------------------- 51 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC--------------------
Confidence 899997 699999999999999999999999754334322 2789985311
Q ss_pred eeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHH
Q 037037 388 SWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLK 467 (701)
Q Consensus 388 SlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymla 467 (701)
.+ .-.+...+|++.-..+|.. .|..++|.=-|-..= -+.+..+ -| ++..| +.|+..
T Consensus 52 ---~~--------~~~~~~~~~i~~v~~ry~g-----~i~~wdV~NE~~~~~-~~~~~~~-~w-~~~~G-----~~~i~~ 107 (254)
T smart00633 52 ---KE--------TLLARLENHIKTVVGRYKG-----KIYAWDVVNEALHDN-GSGLRRS-VW-YQILG-----EDYIEK 107 (254)
T ss_pred ---HH--------HHHHHHHHHHHHHHHHhCC-----cceEEEEeeecccCC-Ccccccc-hH-HHhcC-----hHHHHH
Confidence 01 2256677778777777764 355555554443310 0001110 12 23344 468888
Q ss_pred HHHHHHHhhCCcccCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcC-CCceeEE
Q 037037 468 NLRKASEARGHSFWARGPDNAGSYNSRPHETGFFCDGGDYNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFE-GTCIGAK 546 (701)
Q Consensus 468 sLk~aA~~~Ghp~WG~gP~nAg~YNs~P~~T~FF~~gG~w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~-g~~laaK 546 (701)
.|+.+.+.. |+ +..|-++ |+...+ - .+.++++...+.+.. |++|-+
T Consensus 108 af~~ar~~~------------------P~-a~l~~Nd--y~~~~~------~-----~k~~~~~~~v~~l~~~g~~iDg- 154 (254)
T smart00633 108 AFRYAREAD------------------PD-AKLFYND--YNTEEP------N-----AKRQAIYELVKKLKAKGVPIDG- 154 (254)
T ss_pred HHHHHHHhC------------------CC-CEEEEec--cCCcCc------c-----HHHHHHHHHHHHHHHCCCccce-
Confidence 887665431 22 2223221 221111 0 344577777776664 455321
Q ss_pred eceeeeccCCCCChhhhhccccCCCCCCchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHh
Q 037037 547 LSGFHWWYKTASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWD 626 (701)
Q Consensus 547 V~GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~ 626 (701)
=|++++..... .+.+....+++.|++.|..+.+|=++++.... + ..=...+++++.++..
T Consensus 155 -iGlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~----~---~~qA~~~~~~l~~~~~ 214 (254)
T smart00633 155 -IGLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISGYPN----P---QAQAADYEEVFKACLA 214 (254)
T ss_pred -eeeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCCCc----H---HHHHHHHHHHHHHHHc
Confidence 13344332111 11234777888899999999999777664221 0 0002346677777776
Q ss_pred cC
Q 037037 627 VC 628 (701)
Q Consensus 627 ~G 628 (701)
+.
T Consensus 215 ~p 216 (254)
T smart00633 215 HP 216 (254)
T ss_pred CC
Confidence 64
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.27 E-value=0.054 Score=59.89 Aligned_cols=102 Identities=18% Similarity=0.317 Sum_probs=78.2
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC-CCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT-PQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~-P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
.....-.+..|+-||++|+...-+-+=|.-|++.+ .+++| +..|++|++.+++.|++..|.|. |
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H----------- 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H----------- 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------
Confidence 35678899999999999999999999999999987 77777 99999999999999999888885 4
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQ 422 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~ 422 (701)
.-||.|+.+.| |-.| |.-++.|.+|-+---++|.+...
T Consensus 122 ~~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~ 159 (455)
T PF00232_consen 122 FDLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVK 159 (455)
T ss_dssp S--BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBS
T ss_pred cccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcc
Confidence 35999998753 2222 34478888888888888888553
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=93.67 E-value=0.47 Score=53.56 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=88.2
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC----CCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT----PQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~----P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
.....-.+..++-||++|+...-+-+=|.-|++.+ +++-.+..|++|++-+++.|++..|.|.-|
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~----------- 135 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF----------- 135 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 45678889999999999999999999999998864 578889999999999999999999999866
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
.||.|+.+.- -|-.| |.-++.|.+|-+-..++|.+..+- -||.|..|
T Consensus 136 -~~P~~l~~~~-----------GGW~~----------------~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 -DVPMHLVTEY-----------GSWRN----------------RKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred -CCCHHHHHhc-----------CCCCC----------------HHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 5999985420 12222 345788888888888888874431 15667653
No 18
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.15 Score=59.33 Aligned_cols=141 Identities=18% Similarity=0.370 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHH---HHhcCccEEEEEe-eeccCCCCCCCccccC
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQM---VSELKLKLQVVMS-FHECGGNVGDDVCIPL 359 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~m---vr~~GLKlqvVMS-FHqCGGNVGD~~~IPL 359 (701)
++--..-|+++|+.|.+.|.+-|.|.+-|. .|++|||||=..|... |++.||=+.-=+- |=+--.|-| -|
T Consensus 48 pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~G-----G~ 121 (649)
T KOG0496|consen 48 PEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFG-----GL 121 (649)
T ss_pred hhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCC-----Cc
Confidence 455567799999999999999999999997 6999999998888764 5566765442221 222223333 38
Q ss_pred chHHHhhhhcCCCeeeecCCCCcCCcceeeccCccc----ccCCC-------chHHHHHHHHHHHHHHHhhhhcCCcEEE
Q 037037 360 PHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKER----VLRGR-------TALEVYFDYMRSFRVEFDEFFQNGVISM 428 (701)
Q Consensus 360 P~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~p----Vl~GR-------Tpiq~Y~DFM~SFr~~F~~~l~~gvI~e 428 (701)
|.|+. .-|.|.|..-..-.-.|.=.|.-=-+| +|..+ .--..|..+-+++++....|++...+..
T Consensus 122 P~wL~----~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~ 197 (649)
T KOG0496|consen 122 PWWLR----NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLA 197 (649)
T ss_pred chhhh----hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEE
Confidence 97774 456788865444433332234333333 22110 1125799999999999999999766666
Q ss_pred EEeccc
Q 037037 429 VVVGLG 434 (701)
Q Consensus 429 I~VGLG 434 (701)
+..+.|
T Consensus 198 ~~l~~g 203 (649)
T KOG0496|consen 198 TSLGTG 203 (649)
T ss_pred EecCCC
Confidence 655555
No 19
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=92.53 E-value=0.74 Score=47.76 Aligned_cols=107 Identities=22% Similarity=0.444 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHH
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWV 363 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 363 (701)
+...++++..+|+++|.++--|+--.--+|..|. |-+++++++-|++.|.+ ..+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~----~~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGP----VIHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCc----eEEEECC-Cch-----hHHHHH
Confidence 4556677778899999999988743322566565 99999999999998764 5679996 533 444555
Q ss_pred HhhhhcCCCeeeecCCC-----C---cCCcceeeccCcccccCCCchHHHH
Q 037037 364 AEIGRINPHIFFTDREG-----R---RNPECLSWGIDKERVLRGRTALEVY 406 (701)
Q Consensus 364 ~e~g~~npDIfftDr~G-----~---rn~EyLSlgvD~~pVl~GRTpiq~Y 406 (701)
.+.+ .|++-.|..- + -.+-||-.++|..-+|..-||-++.
T Consensus 240 ~~~~---~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~ 287 (330)
T cd03465 240 ADLG---ADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIK 287 (330)
T ss_pred HHhC---CCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHH
Confidence 5444 3555554331 0 0245777888876345445765555
No 20
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=91.98 E-value=2.2 Score=45.49 Aligned_cols=230 Identities=20% Similarity=0.329 Sum_probs=128.1
Q ss_pred HHHHHHHcCCceEEE--eeeeeeeecCCCCcccchhHHHHHHHHHhcCccEE--EEEeeeccCCCCCCCccccCchHHHh
Q 037037 290 QLRVLKSINVDGVMV--DCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQ--VVMSFHECGGNVGDDVCIPLPHWVAE 365 (701)
Q Consensus 290 ~L~aLK~~GVdGVmv--DVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlq--vVMSFHqCGGNVGD~~~IPLP~WV~e 365 (701)
..+.+-..-..-|+. +.=|+.+|+ .+++|||+.-+++.+.+++.|++++ +++ .|. -.|.||..
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~Lv-W~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLV-WHS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEE-ESS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEE-Ecc-----------cccceeee
Confidence 344444444555555 388999997 5899999999999999999999998 444 453 37999986
Q ss_pred hhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe---cccCCC---C
Q 037037 366 IGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV---GLGPCG---E 438 (701)
Q Consensus 366 ~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V---GLGPaG---E 438 (701)
....+|+ + -+.....|+.+-++.-.-.++ |.|....| -+...| .
T Consensus 93 ~~~~~~~------------~-----------------~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~ 143 (320)
T PF00331_consen 93 LANGSPD------------E-----------------KEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGG 143 (320)
T ss_dssp STTSSBH------------H-----------------HHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSS
T ss_pred ccCCCcc------------c-----------------HHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcccc
Confidence 5111110 0 123444444444443333332 34444433 233332 2
Q ss_pred CCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCCcccCCCCCCCCCCCCCCCCCCccccCCccccccccchHHH
Q 037037 439 LRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFCDGGDYNGYYGRFFLNW 518 (701)
Q Consensus 439 LRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Ghp~WG~gP~nAg~YNs~P~~T~FF~~gG~w~S~YGkFFLsW 518 (701)
||- ..| |.-+| +.|....|+.|-+.. |+-.=|..+ |+....
T Consensus 144 ~r~------~~~-~~~lG-----~~yi~~aF~~A~~~~------------------P~a~L~~ND---y~~~~~------ 184 (320)
T PF00331_consen 144 LRD------SPW-YDALG-----PDYIADAFRAAREAD------------------PNAKLFYND---YNIESP------ 184 (320)
T ss_dssp BCT------SHH-HHHHT-----TCHHHHHHHHHHHHH------------------TTSEEEEEE---SSTTST------
T ss_pred ccC------Chh-hhccc-----HhHHHHHHHHHHHhC------------------CCcEEEecc---ccccch------
Confidence 332 111 22234 678888888887743 222233433 333222
Q ss_pred hHHHHHhHHHHHHHHHHHhcC-CCceeEEecee----eeccCCCCChhhhhccccCCCCCCchHHHHHHHHHcCCEEEEe
Q 037037 519 YSQVLVDHGDRVLSLAKLAFE-GTCIGAKLSGF----HWWYKTASHAAELTAGFYNPCNRDGYAAIVATLKKNGAVLNFA 593 (701)
Q Consensus 519 YS~~Li~HGDrVLs~A~~vF~-g~~laaKV~GI----HWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FT 593 (701)
.+-++++.+.+.+=. |+|| -|| |+..... .+.+...++.|+..|+.+++|
T Consensus 185 ------~k~~~~~~lv~~l~~~gvpI----dgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~IT 239 (320)
T PF00331_consen 185 ------AKRDAYLNLVKDLKARGVPI----DGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHIT 239 (320)
T ss_dssp ------HHHHHHHHHHHHHHHTTHCS-----EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEE
T ss_pred ------HHHHHHHHHHHHHHhCCCcc----ceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEE
Confidence 567788887776552 5554 444 5544432 334667788888899999999
Q ss_pred ecccccccccccCcc--CCCChhHHHHHHHHHHHhcC
Q 037037 594 SAELHTLERQEEFSE--ALADPDGLMWQVMNAAWDVC 628 (701)
Q Consensus 594 ClEM~d~eq~~~~~~--a~s~PE~Lv~QV~~aA~~~G 628 (701)
=|++..... +.. ....=..+..+++.+|.++.
T Consensus 240 ElDv~~~~~---~~~~~~~~~qA~~~~~~~~~~~~~~ 273 (320)
T PF00331_consen 240 ELDVRDDDN---PPDAEEEEAQAEYYRDFLTACFSHP 273 (320)
T ss_dssp EEEEESSST---TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeecCCCC---CcchHHHHHHHHHHHHHHHHHHhCC
Confidence 999887664 111 00001234556666776665
No 21
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=91.76 E-value=0.76 Score=51.92 Aligned_cols=112 Identities=8% Similarity=0.189 Sum_probs=86.5
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC----CCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT----PQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~----P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
..+..-.+..++-||++|+...-.-+=|.-|++.+ +++-.+..|++|++-+++.|++..|-|.-+
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~----------- 133 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF----------- 133 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 35667889999999999999999999999998864 577789999999999999999988888644
Q ss_pred ccCchHHHhh-hhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEec
Q 037037 357 IPLPHWVAEI-GRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVVG 432 (701)
Q Consensus 357 IPLP~WV~e~-g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~VG 432 (701)
-||.|+.+. | |-.| |.-++.|.+|.+-.-++|.+...- -||.|+.+-
T Consensus 134 -dlP~~L~~~yG------------GW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 134 -EMPLHLVQQYG------------SWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred -CCCHHHHHhcC------------CCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 599999642 2 2222 333778888887777777763320 267787653
No 22
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=90.28 E-value=4.5 Score=38.60 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCceEEEeee--eeeee------cCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCc
Q 037037 289 KQLRVLKSINVDGVMVDCW--WGIVE------AHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLP 360 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVW--WGiVE------~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP 360 (701)
+-+..||.+||+.|++.+= ||..= ...|.- .-.-..++++.+++.|+++.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4567899999999999765 66431 111221 34567899999999999999999998 23
Q ss_pred hHHHhhhhcCCCeeeecCCCC--cCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhh
Q 037037 361 HWVAEIGRINPHIFFTDREGR--RNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDE 419 (701)
Q Consensus 361 ~WV~e~g~~npDIfftDr~G~--rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~ 419 (701)
.|+ .+..||=+..|+.|+ +..+....+.-..++ - .-|.||+..-..+.-+
T Consensus 70 ~~~---~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~---n---s~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 70 EDA---AERHPEWFVRDADGRPMRGERFGYPGWYTCCL---N---SPYREFLLEQIREILD 121 (132)
T ss_pred hHH---HHhCCceeeECCCCCCcCCCCcCCCCceecCC---C---ccHHHHHHHHHHHHHH
Confidence 343 368999999999998 333443322111111 1 3477888776666543
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=89.25 E-value=1.6 Score=49.17 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=85.4
Q ss_pred cccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCC---cccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 280 ELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQ---DYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 280 ~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~---qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
...+..-.+..++-||++|+..--.-+=|--|++.+++ +=-+..|++|++-+++.|++-.|.|. |
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 116 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H----------- 116 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 34677889999999999999999999999999998754 44678899999999999999888875 4
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
.-||.|+.+ +-|-.|+| -++.|.+|-+-.-++|.+ .+. -||.|..+
T Consensus 117 ~dlP~~L~~------------~GGW~n~~----------------~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 117 FDTPEALHS------------NGDWLNRE----------------NIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CCCcHHHHH------------cCCCCCHH----------------HHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 469999964 23444444 367777777777777777 541 14666543
No 24
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=88.34 E-value=9.9 Score=40.75 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=127.3
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeee-e------eecCC------CCc-ccchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWG-I------VEAHT------PQD-YNWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWG-i------VE~~~------P~q-YdWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
+..++.+++-|+.||++|+..|-++||+. . +++.+ +++ -.|.--..+.+.+++.||++++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 44789999999999999999999999984 1 11111 000 1144456677888899999999884432
Q ss_pred cCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcE
Q 037037 347 CGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVI 426 (701)
Q Consensus 347 CGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI 426 (701)
-...++.-. ---|.|+. ..+|+...+...+.-+.=+|.-+ ...=++|+.+--.+.-.-.+ |
T Consensus 95 ~~~~~~~~~-~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSHIL-KKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhhhh-hcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 222222111 12467764 23455444444443232244332 45556777776666533221 5
Q ss_pred EEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhhCCcccCCCCCCCCCCCCCCCCCCccccCCc
Q 037037 427 SMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEARGHSFWARGPDNAGSYNSRPHETGFFCDGGD 506 (701)
Q Consensus 427 ~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~Ghp~WG~gP~nAg~YNs~P~~T~FF~~gG~ 506 (701)
..|.+= --|||.. . + -||.+..+.+++. .|. .|. ..|.+..
T Consensus 156 DGIhlD-----dy~yp~~--~--~---------g~~~~~~~~y~~~---~g~-----~~~------~~~~d~~------- 196 (311)
T PF02638_consen 156 DGIHLD-----DYFYPPP--S--F---------GYDFPDVAAYEKY---TGK-----DPF------SSPEDDA------- 196 (311)
T ss_pred CeEEec-----ccccccc--c--C---------CCCCccHHHHHHh---cCc-----CCC------CCccchH-------
Confidence 566543 3455532 1 1 1344445556542 111 111 0111111
Q ss_pred cccccccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeEEeceeeeccCCCCChhhhhccccCCCCCCchHHHHHHHHHc
Q 037037 507 YNGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIGAKLSGFHWWYKTASHAAELTAGFYNPCNRDGYAAIVATLKKN 586 (701)
Q Consensus 507 w~S~YGkFFLsWYS~~Li~HGDrVLs~A~~vF~g~~laaKV~GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh 586 (701)
+..|=.+.+-.--.+|-...+++=+.+.+++=..|+. |.+-.+=|.....-+++-
T Consensus 197 --------W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~-----------------~~~y~~~~qD~~~W~~~G 251 (311)
T PF02638_consen 197 --------WTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIW-----------------NSAYDDYYQDWRNWLKEG 251 (311)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecch-----------------hhhhhheeccHHHHHhcC
Confidence 7788777777777777777776667777776554442 122233467777777655
Q ss_pred CCEEEEe
Q 037037 587 GAVLNFA 593 (701)
Q Consensus 587 ~v~l~FT 593 (701)
-++..++
T Consensus 252 ~iD~i~P 258 (311)
T PF02638_consen 252 YIDYIVP 258 (311)
T ss_pred CccEEEe
Confidence 5555554
No 25
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=87.76 E-value=1.3 Score=49.84 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=83.2
Q ss_pred cccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc---cchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 280 ELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY---NWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 280 ~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY---dWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
...+....+..++-||++|+..--.-+=|.-+++.+++++ -...|++|++-+++.|++-.|.|. |
T Consensus 48 a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 115 (467)
T TIGR01233 48 ASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H----------- 115 (467)
T ss_pred cCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------
Confidence 3467888999999999999999999999999999887666 477899999999999999777775 4
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhc-CCcEEEEEe
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQ-NGVISMVVV 431 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~-~gvI~eI~V 431 (701)
.-||.|+.+ +-|-.|+| -++.|.+|-+---++|.+ .+ =-||.|..+
T Consensus 116 ~dlP~~L~~------------~GGW~n~~----------------~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 116 FDTPEALHS------------NGDFLNRE----------------NIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CCCcHHHHH------------cCCCCCHH----------------HHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 469999964 23444443 366666666555566665 32 125666553
No 26
>PLN02814 beta-glucosidase
Probab=86.59 E-value=3.4 Score=47.21 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=85.9
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccc---hhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW---NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCI 357 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdW---SgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 357 (701)
.....-.+..++-||++|++.--.-+=|--|++.+++++|- ..|++|++-+++.|++-.|-|. | .
T Consensus 73 ~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H-----------~ 140 (504)
T PLN02814 73 SDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H-----------Y 140 (504)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 46778899999999999999999999999999988777775 6799999999999999888886 4 4
Q ss_pred cCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 358 PLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 358 PLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
-||.|+.+. --|-.| |.-++.|.+|-+---++|.+..+- -||.|..+
T Consensus 141 dlP~~L~~~-----------yGGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 141 DLPQSLEDE-----------YGGWIN----------------RKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCCHHHHHh-----------cCCcCC----------------hhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 699999652 023333 334777777777777778774431 14556653
No 27
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=85.00 E-value=3.7 Score=46.48 Aligned_cols=112 Identities=11% Similarity=0.191 Sum_probs=84.1
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC----CCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT----PQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~----P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
.....-.+..++-||++|+..--.-+=|.-|++.| +++=-...|++|++-+++.|++-.|-|. |
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H----------- 130 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H----------- 130 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 46778899999999999999999999999999975 2444578899999999999999888884 5
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
.-||.|+.+. --|-.|+ .-++.|.+|-+---++|.+..+- -||.|..+
T Consensus 131 ~dlP~~L~~~-----------yGGW~n~----------------~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 FEMPYHLVTE-----------YGGWRNR----------------KLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCCHHHHHh-----------cCCcCCh----------------HHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 4699999542 0233333 33677777776667777764320 25777654
No 28
>PLN02849 beta-glucosidase
Probab=84.92 E-value=4.8 Score=46.08 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=85.4
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCI 357 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 357 (701)
..+..-.+..++-||++|+..--.-+=|--|++.+.+++| ...|++|++-+++.|++-.|-|. | .
T Consensus 75 ~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H-----------~ 142 (503)
T PLN02849 75 CDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H-----------Y 142 (503)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------C
Confidence 4677889999999999999999999999999998765555 66899999999999999888875 5 4
Q ss_pred cCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 358 PLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 358 PLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
-||.|+.+. --|-.| |.-++.|.+|-+---++|.+..+- -||.|..+
T Consensus 143 dlP~~L~~~-----------yGGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 143 DHPQYLEDD-----------YGGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCcHHHHHh-----------cCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 699999652 023333 344777777877777777774331 15667654
No 29
>PRK01060 endonuclease IV; Provisional
Probab=83.28 E-value=2.3 Score=43.13 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=42.7
Q ss_pred eeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccch-----hHHHHHHHHHhcCccEE
Q 037037 269 MLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN-----GYKKLFQMVSELKLKLQ 339 (701)
Q Consensus 269 MLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWS-----gY~~Lf~mvr~~GLKlq 339 (701)
|+++++.++- .+.|+..|+.++++|.++|++.++ .|..|... .-+++-+++++.||++.
T Consensus 1 ~~~~g~~~~~-----~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 1 MKLIGAHVSA-----AGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISPE 64 (281)
T ss_pred CCeEEEeeec-----CCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 6677776531 123899999999999999999654 35444332 35668889999999974
No 30
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=83.25 E-value=9.1 Score=39.74 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=65.4
Q ss_pred HHHHHHHHcC-CceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhh
Q 037037 289 KQLRVLKSIN-VDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIG 367 (701)
Q Consensus 289 ~~L~aLK~~G-VdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g 367 (701)
.-|+.+-.+| ||.|.|++.++. ...++|.+.+++.|.| +|+|+|.=.+ ..+.|-+..
T Consensus 99 ~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~k--vI~S~H~f~~--------tP~~~~l~~- 156 (253)
T PRK02412 99 ALIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVK--VVLSYHDFEK--------TPPKEEIVE- 156 (253)
T ss_pred HHHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCE--EEEeeCCCCC--------CcCHHHHHH-
Confidence 3456666778 999999886531 2356777888887765 7889994321 123342210
Q ss_pred hcCCCeeeecCCCCcCCcceeeccCcccc-cCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCC
Q 037037 368 RINPHIFFTDREGRRNPECLSWGIDKERV-LRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGEL 439 (701)
Q Consensus 368 ~~npDIfftDr~G~rn~EyLSlgvD~~pV-l~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGEL 439 (701)
.-.++.++|+|-+.+ ..-+++-++.. .+ .|..++..-.. .+-=|.++||+.|-+
T Consensus 157 --------------~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~~~--~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 157 --------------RLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKELYA--DQPLITMSMGKLGRI 211 (253)
T ss_pred --------------HHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhcCC--CCCEEEEeCCCCchH
Confidence 013556778886665 34456655554 22 34444443211 244578899998854
No 31
>PLN02998 beta-glucosidase
Probab=82.70 E-value=6.3 Score=45.06 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=85.4
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCI 357 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 357 (701)
..+..-.+..++-||++|+..--.-+=|.-|++.|++.+| ...|++|++-+++.|++-.|.|. | .
T Consensus 78 ~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H-----------~ 145 (497)
T PLN02998 78 CDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H-----------F 145 (497)
T ss_pred ccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 4677889999999999999999999999999998776665 67899999999999999888875 4 4
Q ss_pred cCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 358 PLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 358 PLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
-||.|+.+.- -|-.| |.-++.|.+|-+---++|.+..+- -||.|+.+
T Consensus 146 dlP~~L~~~y-----------GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 146 DLPQALEDEY-----------GGWLS----------------QEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCHHHHHhh-----------CCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 6999996520 13322 344777888877777777773321 15667653
No 32
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=81.65 E-value=1.8 Score=45.75 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc---cchhHHHHHHHHHhcCccEEEEEeeeccCC
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY---NWNGYKKLFQMVSELKLKLQVVMSFHECGG 349 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY---dWSgY~~Lf~mvr~~GLKlqvVMSFHqCGG 349 (701)
+...++++.++|+++|.+.--|+-..--+|.+| -|-+++++++-|++.|.. + ..|-||.
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~--~--ilH~CG~ 243 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGI--T--VLHICGF 243 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCc--e--EEEECCC
Confidence 355667778999999988877863333356644 499999999999988732 3 3699973
No 33
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=80.11 E-value=4.5 Score=45.84 Aligned_cols=112 Identities=11% Similarity=0.187 Sum_probs=83.1
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC-C---CcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT-P---QDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~-P---~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
..+..-.+..++-||++|++.--.-+=|--|++.| + ++=-...|++|++-+++.|++-.|.|. |
T Consensus 69 ~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H----------- 136 (478)
T PRK09593 69 IDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H----------- 136 (478)
T ss_pred cchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 46778899999999999999999999999999975 3 344578999999999999999888875 4
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVV 431 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~V 431 (701)
.-||+|+.+. --|-.|+ .-++.|.+|-+---++|.+...- -||.|..+
T Consensus 137 ~dlP~~L~~~-----------~GGW~n~----------------~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 137 FDCPMHLIEE-----------YGGWRNR----------------KMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred cCCCHHHHhh-----------cCCCCCh----------------HHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 4699999642 0233333 33677777766666666664321 15667654
No 34
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=80.07 E-value=2.8 Score=43.13 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeec--CCCC---cccchhHHHHHHHHHhcCccEEEEEeeeccCCC
Q 037037 285 DGLLKQLRVLKSINVDGVMVDCWWGIVEA--HTPQ---DYNWNGYKKLFQMVSELKLKLQVVMSFHECGGN 350 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~--~~P~---qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGN 350 (701)
+.+...++++.++|+++|.++-=|+-... -+|. +|-|.+|+++++.++..|.++ ..|-||+.
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~----~lH~cg~~ 210 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI----VHHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce----EEEECCCH
Confidence 34666777888999999998865543321 1344 445999999999888777543 35999963
No 35
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.63 E-value=4.5 Score=40.03 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecC-CCCccc-------------chhHHHHHHHHHhcCccEEEEEee-ecc
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAH-TPQDYN-------------WNGYKKLFQMVSELKLKLQVVMSF-HEC 347 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P~qYd-------------WSgY~~Lf~mvr~~GLKlqvVMSF-HqC 347 (701)
|.+.|.+.|..||.+||++|.+- .|.|.. +..-|+ +..+++|.+.+++.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 46889999999999999999885 344432 222232 345688999999999999886666 765
Q ss_pred CC
Q 037037 348 GG 349 (701)
Q Consensus 348 GG 349 (701)
..
T Consensus 79 ~~ 80 (316)
T PF00128_consen 79 DD 80 (316)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 36
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.75 E-value=11 Score=39.65 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=66.4
Q ss_pred CcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE
Q 037037 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 262 ~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
..+|+.+|.=...|- .-.+++-++.+|++||+||-++ + .-+....++++.+++.||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip----------D--Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP----------D--LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC----------C--CCHHHHHHHHHHHHHcCCcEEEE
Confidence 446888888776542 2367778999999999999995 1 22467889999999999999988
Q ss_pred EeeeccCCCCCCCccccCchHHHhhhhcCCC-eeeecCCCC
Q 037037 342 MSFHECGGNVGDDVCIPLPHWVAEIGRINPH-IFFTDREGR 381 (701)
Q Consensus 342 MSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfftDr~G~ 381 (701)
++-. .-+..+..+.+..++ |+|..+.|.
T Consensus 149 vap~------------t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 149 VAPT------------TTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred eCCC------------CCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 7655 235688877777777 666577663
No 37
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.47 E-value=52 Score=37.95 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=105.6
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCC-ccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQ-DYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~-qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
.....-.+..++-+|++|+...-+-+=|.-+-+.+.+ ..| =..|++||+-+.+.|++..|-|+ |
T Consensus 55 ~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H----------- 122 (460)
T COG2723 55 SDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H----------- 122 (460)
T ss_pred cchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 4567788999999999999999999999999986655 455 45699999999999999888775 4
Q ss_pred ccCchHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcC-CcEEEEEecccC
Q 037037 357 IPLPHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQN-GVISMVVVGLGP 435 (701)
Q Consensus 357 IPLP~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~-gvI~eI~VGLGP 435 (701)
..||.|+.+.. .|-.| |.-|+.|..|-+---..|.+..+- -|.-|+.|=+.
T Consensus 123 fd~P~~L~~~y-----------gGW~n----------------R~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~- 174 (460)
T COG2723 123 FDLPLWLQKPY-----------GGWEN----------------RETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE- 174 (460)
T ss_pred cCCcHHHhhcc-----------CCccC----------------HHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc-
Confidence 57999998653 23322 455888888887777778766541 14556655443
Q ss_pred CCCCCCCCCCCCCCCcCCcceeehhchHHHHHHHHHHHHhh
Q 037037 436 CGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKNLRKASEAR 476 (701)
Q Consensus 436 aGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~ 476 (701)
+=|. .|--+|++..++-.=+-+--.+-++|.+.
T Consensus 175 ---~~y~-----~~~~~p~~~~~~~~~qa~hh~~lA~A~av 207 (460)
T COG2723 175 ---LGYL-----YGGHPPGIVDPKAAYQVAHHMLLAHALAV 207 (460)
T ss_pred ---cccc-----ccccCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 2121 23345777777766566666666666653
No 38
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=75.19 E-value=4.4 Score=44.20 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=52.3
Q ss_pred cccEEEeeccceeec-----CC----cccCHHHHHH-----------HHHHHHHcCCce-EEEeeeeeeeecCCCCccc-
Q 037037 263 YVPVYVMLPLGVINL-----KC----ELIDPDGLLK-----------QLRVLKSINVDG-VMVDCWWGIVEAHTPQDYN- 320 (701)
Q Consensus 263 ~vpVyVMLPLdvV~~-----~~----~l~~~~al~~-----------~L~aLK~~GVdG-VmvDVWWGiVE~~~P~qYd- 320 (701)
.+-..+..|++++.. .+ -+++|+.+.+ .+++...+|++| |.+...-+-.+-=+|.+|.
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~e 251 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEK 251 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHH
Confidence 355778889985542 11 1335655444 444556789998 6666643222223466666
Q ss_pred --chhHHHHHHHHHhcCccEEEEEeeeccC
Q 037037 321 --WNGYKKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 321 --WSgY~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
|-+++++++-|++.|.+ +| .|-||
T Consensus 252 f~~P~~k~i~~~i~~~g~~--~i--lh~cG 277 (378)
T cd03308 252 FYWPSFKKVVEGLAARGQR--IF--LFFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHhcCCC--EE--EEcCC
Confidence 99999999999998754 23 39998
No 39
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=74.15 E-value=3.2 Score=43.75 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCC
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGG 349 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGG 349 (701)
..++++..+|+|+|.+.--|+-..--+|..|. |-+++++++-+++ + ....|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-----~~ilh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-----PTILHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-----CcEEEECCC
Confidence 45566677899999998889844323677777 9999999999997 2 233588984
No 40
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=74.07 E-value=16 Score=37.00 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=64.3
Q ss_pred HHHH-HHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhc
Q 037037 291 LRVL-KSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRI 369 (701)
Q Consensus 291 L~aL-K~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~ 369 (701)
|+.+ ...|||.|.||++|.. ...++|.+.+++.|- .+|+|+|.=.+. -+.+.|+ +.
T Consensus 84 l~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~--kvI~S~H~f~~t------p~~~~l~-~~--- 140 (228)
T TIGR01093 84 LKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGT--KIIMSYHDFQKT------PSWEEIV-ER--- 140 (228)
T ss_pred HHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCC--EEEEeccCCCCC------CCHHHHH-HH---
Confidence 4554 6789999999998741 235667777777664 578899943211 1122332 11
Q ss_pred CCCeeeecCCCCcCCcceeeccCcccc-cCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCCC
Q 037037 370 NPHIFFTDREGRRNPECLSWGIDKERV-LRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELR 440 (701)
Q Consensus 370 npDIfftDr~G~rn~EyLSlgvD~~pV-l~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGELR 440 (701)
-.++.++|+|-+.+ ..-+++-++. .. .+|..++.... .+.=|.++||+.|-+-
T Consensus 141 -------------~~~~~~~gaDivKia~~a~~~~D~~-~l-l~~~~~~~~~~---~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 141 -------------LEKALSYGADIVKIAVMANSKEDVL-TL-LEITNKVDEHA---DVPLITMSMGDRGKIS 194 (228)
T ss_pred -------------HHHHHHhCCCEEEEEeccCCHHHHH-HH-HHHHHHHHhcC---CCCEEEEeCCCCChhH
Confidence 12445677886655 2345554433 22 25555665441 2455789999998653
No 41
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=73.03 E-value=16 Score=38.68 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCceEEEee-eeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchH-
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC-WWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHW- 362 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~W- 362 (701)
++++..+++|..+|++.|.+|= -|+.+-...+......+-+++.+.+++.+...++ ..|-|.||...+-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 5778889999999999999986 5554332112344556666777777765555554 46999999743322222333
Q ss_pred HHhh-hhcCCCeeeecCCCCc--CCccee
Q 037037 363 VAEI-GRINPHIFFTDREGRR--NPECLS 388 (701)
Q Consensus 363 V~e~-g~~npDIfftDr~G~r--n~EyLS 388 (701)
+++. -+...|.++-|-...+ +-|.|.
T Consensus 233 i~~~l~~~~vd~~~le~~~~~~~~~~~l~ 261 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNSRAGGLEPLK 261 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCCCCcchHHHH
Confidence 2332 2344677776665432 344443
No 42
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=72.85 E-value=11 Score=39.99 Aligned_cols=74 Identities=12% Similarity=0.309 Sum_probs=54.2
Q ss_pred cccEEEeeccc---eeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEE
Q 037037 263 YVPVYVMLPLG---VINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQ 339 (701)
Q Consensus 263 ~vpVyVMLPLd---vV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlq 339 (701)
.+||+||+=-- .+-++ ..-+.+...++.+|++|+|||.+ |+.- ..++.|...=++|.+.++ ||++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~----G~L~--~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVT----GVLD--VDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEE----eeEC--CCCCcCHHHHHHHHHHhc--CCceE
Confidence 48999998442 22222 24478999999999999999987 4443 478999999999999985 67775
Q ss_pred EEEeeecc
Q 037037 340 VVMSFHEC 347 (701)
Q Consensus 340 vVMSFHqC 347 (701)
-=++|-.|
T Consensus 120 FHRAfD~~ 127 (248)
T PRK11572 120 FHRAFDMC 127 (248)
T ss_pred Eechhhcc
Confidence 44555544
No 43
>PLN02361 alpha-amylase
Probab=72.64 E-value=11 Score=42.05 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=51.1
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccc-------------hhHHHHHHHHHhcCccEEEEEee-ecc
Q 037037 282 IDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW-------------NGYKKLFQMVSELKLKLQVVMSF-HEC 347 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdW-------------SgY~~Lf~mvr~~GLKlqvVMSF-HqC 347 (701)
+-++.|.+.|..||.+||++|-+.- +.+..++.-|+- ..+++|++-+++.|+|+.+=+-+ |-|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P---~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPP---PSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCC---CCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 3579999999999999999998765 234444444444 35899999999999999876655 777
Q ss_pred CCCC
Q 037037 348 GGNV 351 (701)
Q Consensus 348 GGNV 351 (701)
|..-
T Consensus 103 g~~~ 106 (401)
T PLN02361 103 GTTQ 106 (401)
T ss_pred CCCC
Confidence 7543
No 44
>PHA00442 host recBCD nuclease inhibitor
Probab=70.06 E-value=4.2 Score=34.54 Aligned_cols=26 Identities=42% Similarity=0.863 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHh
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSE 333 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~ 333 (701)
.-|.+|++.||| ||+||.+..+|+-+
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~ 55 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAE 55 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhh
Confidence 457888889987 99999999999864
No 45
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.95 E-value=54 Score=34.85 Aligned_cols=115 Identities=11% Similarity=0.209 Sum_probs=69.7
Q ss_pred cCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCCccc-----chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCC
Q 037037 282 IDPDGLLKQLRVLKSIN--VDGVMVDCWWGIVEAHTPQDYN-----WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDD 354 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~G--VdGVmvDVWWGiVE~~~P~qYd-----WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~ 354 (701)
.+.+.+..-++.+++.| +|.|.+|.-|-- .-+.|. |-.-+++++-+++.|+|+.+++.=+-+-
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~------ 96 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT------ 96 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC------
Confidence 46688899999999988 789999985531 123333 3456788888999999877766544321
Q ss_pred ccccCchHHHhhhhcCCCeeeecCCCCcCCccee-eccCcccc--cCCCchHHHHHHHHHHHH
Q 037037 355 VCIPLPHWVAEIGRINPHIFFTDREGRRNPECLS-WGIDKERV--LRGRTALEVYFDYMRSFR 414 (701)
Q Consensus 355 ~~IPLP~WV~e~g~~npDIfftDr~G~rn~EyLS-lgvD~~pV--l~GRTpiq~Y~DFM~SFr 414 (701)
-.=+.+.+. ..+++.++..|. ..++. +|....-+ +...-+.+.|.+-++.+.
T Consensus 97 -----~s~~~~e~~-~~g~~vk~~~g~--~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 97 -----DSENFREAV-EKGYLVSEPSGD--IPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred -----CCHHHHhhh-hCCeEEECCCCC--CCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 111233343 347888998883 23442 33222222 233444566666665554
No 46
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=69.78 E-value=9.4 Score=41.81 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
+.-|+.||..||.-|-+-|| |.+...+..|...=.++++-++++|||+- |-||-
T Consensus 27 ~d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vl--ldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVL--LDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEE--EEE-S
T ss_pred CCHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEE--Eeecc
Confidence 34688899999999999997 66644578888888889999999999976 88883
No 47
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.55 E-value=9.3 Score=38.87 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=46.5
Q ss_pred eccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchh--HHHHHHHHHhcCccEEEE
Q 037037 270 LPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNG--YKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 270 LPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSg--Y~~Lf~mvr~~GLKlqvV 341 (701)
+||++.. ..++..-.+...++.+|.+|.+||++.+. + ....+..++|+. -++|-+++++.||++..+
T Consensus 8 ~~~~~~~--~~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~--~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYE--KALPAGECWLEKLAIAKTAGFDFVEMSVD-E--SDERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeec--ccCCCCCCHHHHHHHHHHcCCCeEEEecC-c--cccchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 4565543 12344457889999999999999999642 0 001134456765 567899999999999875
No 48
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=68.77 E-value=8.6 Score=41.13 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=67.3
Q ss_pred CCCCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCcc
Q 037037 258 FSGTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLK 337 (701)
Q Consensus 258 ~~~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLK 337 (701)
++...+|.|.+-.--..-.+...+.+. +++.|+.+++.||.||.||.. .+..|+-=..|.+|++.+-+.+|-
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcE
Confidence 455677777766554431111113333 699999999999999999986 458899999999999999999875
Q ss_pred EEEEEeeeccCCCCCCCccccCch-HHHhhhhcCCCeeeecCCCCcCCcceeec
Q 037037 338 LQVVMSFHECGGNVGDDVCIPLPH-WVAEIGRINPHIFFTDREGRRNPECLSWG 390 (701)
Q Consensus 338 lqvVMSFHqCGGNVGD~~~IPLP~-WV~e~g~~npDIfftDr~G~rn~EyLSlg 390 (701)
+-||.|= +|. |- +.-|.+ ..++|-|-.|+-.|.
T Consensus 153 ----vnfHg~~----------kPtG~~----RTyPN~--mT~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 153 ----VNFHGAT----------KPTGLR----RTYPNL--MTREGVRGQEYNKWS 186 (273)
T ss_dssp ----EEETTS-------------TTHH----HCSTTE--EEE--S--GGGGGTT
T ss_pred ----EEecCCc----------CCCccc----ccCccH--HHHHHhhhhhhcccc
Confidence 5799765 554 43 566765 578888999995454
No 49
>PLN02591 tryptophan synthase
Probab=68.44 E-value=24 Score=37.18 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=64.9
Q ss_pred CcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE
Q 037037 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 262 ~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
..+|+.+|.=+..|- .-.+++-++.+|++||+||.++ ..-+..-.++.+.+++.||.+.+.
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~Gviip------------DLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVP------------DLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeC------------CCCHHHHHHHHHHHHHcCCeEEEE
Confidence 346888888776542 2478888999999999999997 123567778999999999999998
Q ss_pred EeeeccCCCCCCCccccCchHHHhhhhcCCCee-eecCCC
Q 037037 342 MSFHECGGNVGDDVCIPLPHWVAEIGRINPHIF-FTDREG 380 (701)
Q Consensus 342 MSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIf-ftDr~G 380 (701)
.+-. +-+..+..+.+.-++.. +..+.|
T Consensus 138 v~Pt------------t~~~ri~~ia~~~~gFIY~Vs~~G 165 (250)
T PLN02591 138 TTPT------------TPTERMKAIAEASEGFVYLVSSTG 165 (250)
T ss_pred eCCC------------CCHHHHHHHHHhCCCcEEEeeCCC
Confidence 8766 23568888777666644 335444
No 50
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=67.98 E-value=5.2 Score=42.19 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccC
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
...++++..+||++|.+.-=|+--.--+|..|. +-+++++++-+++. ....|-||
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~------~~ilH~cG 240 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL------PTILHICG 240 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC------CcEEEECC
Confidence 445666778999999887767532223466555 99999999999875 23468897
No 51
>PRK08508 biotin synthase; Provisional
Probab=67.86 E-value=24 Score=37.01 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCceEEE-eeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 283 DPDGLLKQLRVLKSINVDGVMV-DCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
+++.+.+..+.+++.|+..|.+ +-+= ++....+.+|.++++.||+.++++.+..
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i~~ 95 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHLIA 95 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEEEe
Confidence 5677888888888999998865 2221 2234578899999999999887665433
No 52
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=66.93 E-value=4.5 Score=37.95 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 291 LRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 291 L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
|+.+|++|+++|++.+|+..-.... =....++.+++++.||++..+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~i~~~~ 47 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-----DDEAEELRRLLEDYGLKIASLH 47 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-----hHHHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999998876543211 2467899999999999965543
No 53
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.14 E-value=46 Score=38.81 Aligned_cols=111 Identities=20% Similarity=0.341 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc-------------chhHHHHHHHHHhcCccEEEEEeeeccCC
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN-------------WNGYKKLFQMVSELKLKLQVVMSFHECGG 349 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd-------------WSgY~~Lf~mvr~~GLKlqvVMSFHqCGG 349 (701)
|.++|.+.|..||.+||++|-+-= |.+..+--.|+ ...+++|++.+++.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 669999999999999999998753 34544433443 35678999999999999999999987772
Q ss_pred CCCCCccccCchHHHhhhh---------cCC--CeeeecCCCCcCCcceee-ccCcccccCCCchHHHHHHHHH
Q 037037 350 NVGDDVCIPLPHWVAEIGR---------INP--HIFFTDREGRRNPECLSW-GIDKERVLRGRTALEVYFDYMR 411 (701)
Q Consensus 350 NVGD~~~IPLP~WV~e~g~---------~np--DIfftDr~G~rn~EyLSl-gvD~~pVl~GRTpiq~Y~DFM~ 411 (701)
. -.|+..... ..| |-|+-+..| .|.+| +++.+|-|.=..| ...+||.
T Consensus 254 ~---------~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~----~~~~w~g~~~lPdLN~~np--~v~~~l~ 312 (598)
T PRK10785 254 S---------HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDG----RALDWLGYASLPKLDFQSE--EVVNEIY 312 (598)
T ss_pred C---------CHHHHHhhccccccccCCCCCcceeeEECCCC----CcCCcCCCCcCccccCCCH--HHHHHHH
Confidence 1 127654321 111 444444444 24565 5677887764433 4555554
No 54
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=65.83 E-value=40 Score=33.83 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=67.9
Q ss_pred eeecCCccc-CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCC
Q 037037 274 VINLKCELI-DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVG 352 (701)
Q Consensus 274 vV~~~~~l~-~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVG 352 (701)
....+|... +.+.-..-|+.+-.+|++.|.|+++ .+.-+.... .....-+..+|+|+|-..+
T Consensus 63 ~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~--~~~~~~~~~iI~S~H~f~~--- 125 (224)
T PF01487_consen 63 TKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSR--LAARKGGTKIILSYHDFEK--- 125 (224)
T ss_dssp BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHH--HHHHHTTSEEEEEEEESS----
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHH--HHHhhCCCeEEEEeccCCC---
Confidence 334455543 3344445566667788998888665 122222223 3334455677999994442
Q ss_pred CCccccCchH--HHhhhhcCCCeeeecCCCCcCCcceeeccCcccc-cCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 037037 353 DDVCIPLPHW--VAEIGRINPHIFFTDREGRRNPECLSWGIDKERV-LRGRTALEVYFDYMRSFRVEFDEFFQNGVISMV 429 (701)
Q Consensus 353 D~~~IPLP~W--V~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pV-l~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI 429 (701)
-|.| +.+. -.++..+|+|-+.+ ...+++-++.. +..|..++.... .+.-|
T Consensus 126 ------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~~---~~p~i 178 (224)
T PF01487_consen 126 ------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREEP---DIPVI 178 (224)
T ss_dssp --------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHHT---SSEEE
T ss_pred ------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhcc---CCcEE
Confidence 3443 2221 13344567776555 35566666665 566667777652 37778
Q ss_pred EecccCCCCC
Q 037037 430 VVGLGPCGEL 439 (701)
Q Consensus 430 ~VGLGPaGEL 439 (701)
-++||+.|.+
T Consensus 179 ~~~MG~~G~~ 188 (224)
T PF01487_consen 179 AISMGELGRI 188 (224)
T ss_dssp EEEETGGGHH
T ss_pred EEEcCCCchh
Confidence 9999999853
No 55
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=65.01 E-value=87 Score=31.62 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhh
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGR 368 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~ 368 (701)
.-|+.+-.+|+|-|.||..+ .-..++...+++. +..+|+|+|.-.+.. +.+.|..-.
T Consensus 80 ~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~--~~kiI~S~H~f~~tp------~~~~l~~~~-- 136 (225)
T cd00502 80 ELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKG--NTKIIGSYHDFSGTP------SDEELVSRL-- 136 (225)
T ss_pred HHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhC--CCEEEEEeccCCCCc------CHHHHHHHH--
Confidence 34566667789999998755 2356666666644 455788999544222 233343211
Q ss_pred cCCCeeeecCCCCcCCcceeeccCccccc-CCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCCC-CCCCCC
Q 037037 369 INPHIFFTDREGRRNPECLSWGIDKERVL-RGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGELR-YPSCPV 446 (701)
Q Consensus 369 ~npDIfftDr~G~rn~EyLSlgvD~~pVl-~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGELR-YPSYp~ 446 (701)
.++-.+|+|-..+- .-+++-++. +.| .|..++.... .+.=|.++||+.|.+- -=+.--
T Consensus 137 ---------------~~~~~~gadivKla~~~~~~~D~~-~ll-~~~~~~~~~~---~~p~i~~~MG~~G~~SRil~~~~ 196 (225)
T cd00502 137 ---------------EKMAALGADIVKIAVMANSIEDNL-RLL-KFTRQVKNLY---DIPLIAINMGELGKLSRILSPVF 196 (225)
T ss_pred ---------------HHHHHhCCCEEEEEecCCCHHHHH-HHH-HHHHHHHhcC---CCCEEEEEcCCCCchhhcccccc
Confidence 12334566655552 334433333 233 3444444322 2455788999999643 111101
Q ss_pred CCCCcCCcceeehhchHHHHHHHHH
Q 037037 447 KHGWRYPGIGEFQCYDQYLLKNLRK 471 (701)
Q Consensus 447 ~~GW~yPGiGEFQCYDkymlasLk~ 471 (701)
..-+.|..+|+-..-.+.-+..|++
T Consensus 197 gs~~t~~~~~~~sApGQ~~~~~l~~ 221 (225)
T cd00502 197 GSPLTYASLPEPSAPGQLSVEELKQ 221 (225)
T ss_pred CCcccccCCCCCCCCCCcCHHHHHH
Confidence 1126666666555544444444444
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=64.99 E-value=25 Score=34.47 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeec-CCCCcc-------------cchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEA-HTPQDY-------------NWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~-~~P~qY-------------dWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
.-+.+.+.+.|..||++||++|-+---+--... ....-| .+...++|.+-+++.|+||..=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457899999999999999999966433221110 001111 346678999999999999998888877
Q ss_pred cCC
Q 037037 347 CGG 349 (701)
Q Consensus 347 CGG 349 (701)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 775
No 57
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=62.59 E-value=19 Score=37.09 Aligned_cols=55 Identities=15% Similarity=0.017 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeee---cCCCCcccchhHHHHHHHHHhcCccEEEEEee
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVE---AHTPQDYNWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE---~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
...|+.||.+|++.|.+.+= +.-| .-. +..+|..+.+.++.++++|+++.+-|-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 56788999999999988743 3111 111 2468899999999999999987665555
No 58
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=62.52 E-value=32 Score=35.42 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=46.9
Q ss_pred cccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 263 ~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
.+|+.+|.=++.+- ..++.+-++.++.+||+||.+.-- | + ..-.++++.+++.|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 35788885554331 134677799999999999999411 1 1 256789999999999999999
Q ss_pred eee
Q 037037 343 SFH 345 (701)
Q Consensus 343 SFH 345 (701)
+-+
T Consensus 137 ~P~ 139 (242)
T cd04724 137 APT 139 (242)
T ss_pred CCC
Confidence 855
No 59
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=62.34 E-value=6.6 Score=29.35 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCceEEEe
Q 037037 288 LKQLRVLKSINVDGVMVD 305 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvD 305 (701)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345688889999999987
No 60
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=61.76 E-value=5.3 Score=41.93 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCC---cccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHh
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQ---DYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAE 365 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~---qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 365 (701)
..++++..+|+|+|.+-- ....--+|. +|-+-+|++|++.|++.|.+ ..-+|-|| +..--||.+ .+
T Consensus 186 ~~~~~~~~~G~d~i~~~d--~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG-----~~~~~~~~l-~~ 254 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFD--SSGSLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICG-----NTTPILDDL-AD 254 (343)
T ss_dssp HHHHHHHHTT-SEEEEEE--TTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETT-----HG-GGHHHH-HT
T ss_pred HHHHHHHHhCCCcccccc--cccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECC-----chHHHHHHH-Hh
Confidence 345677789999995433 222222344 77899999999999999995 45689998 221123333 33
Q ss_pred hhhcCCCeeeecCCCCc--------CCcceeeccCcccccCCCchHHHHHHHHHHHH
Q 037037 366 IGRINPHIFFTDREGRR--------NPECLSWGIDKERVLRGRTALEVYFDYMRSFR 414 (701)
Q Consensus 366 ~g~~npDIfftDr~G~r--------n~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr 414 (701)
.| .|++-.|..=.- .+=||-=++|..-+|. -||-+++..--+-..
T Consensus 255 ~g---~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 255 LG---ADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp SS----SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred cC---CCEEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 32 344444432111 1222222445444556 677777765444444
No 61
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=61.53 E-value=9.7 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCcCCcceeehhch
Q 037037 437 GELRYPSCPVKHGWRYPGIGEFQCYD 462 (701)
Q Consensus 437 GELRYPSYp~~~GW~yPGiGEFQCYD 462 (701)
-+|.|||+-..-||+ +++-+.|
T Consensus 382 ~dl~~~sF~r~~Gy~----~~lSA~D 403 (622)
T PF02724_consen 382 DDLVFPSFVRTYGYR----GKLSASD 403 (622)
T ss_pred CCceeeeEEEEecCC----CceeHHH
Confidence 478899998776665 4565655
No 62
>PRK09875 putative hydrolase; Provisional
Probab=60.82 E-value=2.2e+02 Score=30.73 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccc
Q 037037 278 KCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCI 357 (701)
Q Consensus 278 ~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 357 (701)
+..+.+.++....|+.+|++|+.-| ||+ .|.-+ =..=..|.++.++.|+.|.+.=-||.-.
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~--------T~~g~-GRd~~~l~~is~~tgv~Iv~~TG~y~~~--------- 87 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEM--------TNRYM-GRNAQFMLDVMRETGINVVACTGYYQDA--------- 87 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-Eec--------CCCcc-CcCHHHHHHHHHHhCCcEEEcCcCCCCc---------
Confidence 4467888999999999999999876 443 22222 1223678889999998877776677321
Q ss_pred cCchHHH
Q 037037 358 PLPHWVA 364 (701)
Q Consensus 358 PLP~WV~ 364 (701)
-+|.|+.
T Consensus 88 ~~p~~~~ 94 (292)
T PRK09875 88 FFPEHVA 94 (292)
T ss_pred cCCHHHh
Confidence 3788886
No 63
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.22 E-value=21 Score=36.15 Aligned_cols=53 Identities=15% Similarity=0.376 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc--cc--hhHHHHHHHHHhcCccEEEEEeee
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY--NW--NGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY--dW--SgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
-+...|+.++++|+++|++ |+- .|..| ++ ..=++|.+.+.+.||++..+...|
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 5899999999999999998 331 11122 12 145778889999999986554444
No 64
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=57.72 E-value=21 Score=37.87 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=63.9
Q ss_pred CCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 261 TPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 261 ~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
.+.+|+.+|.=...|- ...++.-++.+|++||+||.++ .=| +....++.+.+++.||.+..
T Consensus 85 ~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIip--------DLP----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIP--------DLP----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEET--------TSB----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEc--------CCC----hHHHHHHHHHHHHcCCeEEE
Confidence 4678999999887653 2467778999999999999874 222 45778999999999999999
Q ss_pred EEeeeccCCCCCCCccccCchHHHhhhhcCCC-eeeecCCCC
Q 037037 341 VMSFHECGGNVGDDVCIPLPHWVAEIGRINPH-IFFTDREGR 381 (701)
Q Consensus 341 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfftDr~G~ 381 (701)
.++=. .-+..+..+.+.-+. ||+..+.|.
T Consensus 146 lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 146 LVAPT------------TPEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp EEETT------------S-HHHHHHHHHH-SSEEEEESSSSS
T ss_pred EECCC------------CCHHHHHHHHHhCCcEEEeeccCCC
Confidence 88865 245677777666555 455577664
No 65
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=55.95 E-value=22 Score=36.33 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccch--hHHHHHHHHHhcCccEEEE
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN--GYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWS--gY~~Lf~mvr~~GLKlqvV 341 (701)
.-.+...|+.++++|.+||++.++.. - ..+..++|+ .-.++-+++++.||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET-D--DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc-c--chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 45788999999999999999965431 1 123444554 4567888899999999866
No 66
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=54.94 E-value=29 Score=35.10 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecC-CCCcccchh--HHHHHHHHHhcCccEEEE
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAH-TPQDYNWNG--YKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P~qYdWSg--Y~~Lf~mvr~~GLKlqvV 341 (701)
.+...|+.++++|.++|++.+. +.. .....+|+. -++|.+++++.||++..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 5788999999999999998532 211 123346754 578999999999999866
No 67
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=54.19 E-value=28 Score=40.66 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=44.4
Q ss_pred CHHHHHHHH-HHHHHcCCceEEE-eeeeeeeecCCCCcccchh-----------------HHHHHHHHHhcCccEEEEEe
Q 037037 283 DPDGLLKQL-RVLKSINVDGVMV-DCWWGIVEAHTPQDYNWNG-----------------YKKLFQMVSELKLKLQVVMS 343 (701)
Q Consensus 283 ~~~al~~~L-~aLK~~GVdGVmv-DVWWGiVE~~~P~qYdWSg-----------------Y~~Lf~mvr~~GLKlqvVMS 343 (701)
+.++|...| ..||.+||+.|.+ +|-. .|...+|.| .++|++.+.+.|+||..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e------~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAE------HPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccc------CCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 358888886 9999999999998 7642 233334433 78999999999999887666
Q ss_pred eeccC
Q 037037 344 FHECG 348 (701)
Q Consensus 344 FHqCG 348 (701)
|--++
T Consensus 228 ~NH~~ 232 (613)
T TIGR01515 228 PGHFP 232 (613)
T ss_pred ccCcC
Confidence 63333
No 68
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.06 E-value=28 Score=35.01 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
.+...|+.+|++|.+||++. + | +++ .-.++.+++++.||++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~--~-------~--~~~-~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL--F-------P--YDW-DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec--C-------C--ccC-CHHHHHHHHHHcCCeEEE
Confidence 58889999999999999873 2 1 122 257788899999999864
No 69
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=52.68 E-value=61 Score=34.38 Aligned_cols=92 Identities=14% Similarity=0.285 Sum_probs=67.3
Q ss_pred CcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE
Q 037037 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 262 ~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
..+|+.+|.=+..|- .-.+++-++.+|++|||||.+.-. | +.-..++++.+++.||++..+
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 346888887776542 236788899999999999988642 2 255789999999999999999
Q ss_pred EeeeccCCCCCCCccccCchHHHhhhhcCCC-eeeecCCCCcCC
Q 037037 342 MSFHECGGNVGDDVCIPLPHWVAEIGRINPH-IFFTDREGRRNP 384 (701)
Q Consensus 342 MSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfftDr~G~rn~ 384 (701)
++-+ .-+..+..+.+.-.. |++..+.|..-.
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVTGL 182 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCCC
Confidence 9887 235677776655543 555577776443
No 70
>PRK09989 hypothetical protein; Provisional
Probab=52.61 E-value=30 Score=35.09 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
-|...|+++|++|.+||++-. +..+++ .++.+++++.||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~~---~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYST---LQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCCH---HHHHHHHHHcCCcEEE
Confidence 478899999999999999932 222443 5788889999999763
No 71
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=52.14 E-value=42 Score=37.43 Aligned_cols=56 Identities=11% Similarity=0.267 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
..+..++.++..|++|+||..+++. .+..+.+..-..+++.+...|+||-..+=++
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~ 70 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLFFSFDMN 70 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 5688899999999999999999996 3555778888999999999997776555554
No 72
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=52.04 E-value=38 Score=35.61 Aligned_cols=87 Identities=13% Similarity=0.291 Sum_probs=58.7
Q ss_pred ccCHHHHHHHHHHHHHcC--CceEEEee-eeeeeecCCCCcccch-----hHHHHHHHHHhcCccEEEEEeeeccCCCCC
Q 037037 281 LIDPDGLLKQLRVLKSIN--VDGVMVDC-WWGIVEAHTPQDYNWN-----GYKKLFQMVSELKLKLQVVMSFHECGGNVG 352 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~G--VdGVmvDV-WWGiVE~~~P~qYdWS-----gY~~Lf~mvr~~GLKlqvVMSFHqCGGNVG 352 (701)
..+.+.+.+-++.+|++| +|.|.+|. |+ ...+-..|.|. .-+++++-+++.|+|+..++ |-+ |+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~---~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~--~P~---i~ 91 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM---KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI--NPY---IA 91 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc---cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe--cCC---CC
Confidence 467889999999999999 89999998 65 21111245555 67899999999999965555 432 22
Q ss_pred CCccccCchHHHhhhhcCCCeeeecCCCCc
Q 037037 353 DDVCIPLPHWVAEIGRINPHIFFTDREGRR 382 (701)
Q Consensus 353 D~~~IPLP~WV~e~g~~npDIfftDr~G~r 382 (701)
.+. | +.+++. .++.|.++..|..
T Consensus 92 ~~~----~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 92 QKS----P--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred CCc----h--hHHHHH-HCCeEEECCCCCe
Confidence 111 2 334443 4588998887763
No 73
>PLN02389 biotin synthase
Probab=50.84 E-value=28 Score=38.62 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC-------CcccchhHHHHHHHHHhcCccE
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTP-------QDYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P-------~qYdWSgY~~Lf~mvr~~GLKl 338 (701)
..+|++||++|+|.+.+ ..|. .| ..-+|..+.+..+.++++|+++
T Consensus 178 ~E~l~~LkeAGld~~~~-----~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH-----NLDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEe-----eecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 57899999999999988 3453 12 1238999999999999999876
No 74
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=50.28 E-value=16 Score=38.68 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCceEEE-eeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHH
Q 037037 288 LKQLRVLKSINVDGVMV-DCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWV 363 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 363 (701)
....+++.++|+++|.+ |- |+- --+|.+|+ |-+.++|++-+++.|-. .+| .|-|||+. ++-.++
T Consensus 180 ~~~~~~~ieaGad~i~i~d~-~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~i--lh~cg~~~------~~~~~~ 247 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDS-WAG--ALSPEDFEEFVLPYLKRIIEEVKKRLPG-VPV--ILFAKGAG------GLLEDL 247 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCc-ccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCE--EEEcCCCH------HHHHHH
Confidence 34445556699999974 43 442 24577777 99999999999998311 123 56677431 455555
Q ss_pred HhhhhcCCCeeeecC
Q 037037 364 AEIGRINPHIFFTDR 378 (701)
Q Consensus 364 ~e~g~~npDIfftDr 378 (701)
.+.+ .|++-.|.
T Consensus 248 ~~~~---~~~~s~d~ 259 (335)
T cd00717 248 AQLG---ADVVGLDW 259 (335)
T ss_pred HhcC---CCEEEeCC
Confidence 5433 35554443
No 75
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=49.80 E-value=24 Score=36.20 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=47.3
Q ss_pred CCcccEEEeecc---ceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCcc
Q 037037 261 TPYVPVYVMLPL---GVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLK 337 (701)
Q Consensus 261 ~~~vpVyVMLPL---dvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLK 337 (701)
...+||+||+=- |.+-++ ...+.+...++.+|++|++||.+ |..- .++..|...=++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~Vf----G~L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVF----GALT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEE----EeEC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 456899999854 222222 24478999999999999999987 4444 478899999999999987 666
Q ss_pred EEEEEee
Q 037037 338 LQVVMSF 344 (701)
Q Consensus 338 lqvVMSF 344 (701)
+--=++|
T Consensus 117 ~tFHRAf 123 (201)
T PF03932_consen 117 VTFHRAF 123 (201)
T ss_dssp EEE-GGG
T ss_pred EEEeCcH
Confidence 5433333
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=47.92 E-value=45 Score=38.57 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchh-----------------HHHHHHHHHhcCccEEEEEeee
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNG-----------------YKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSg-----------------Y~~Lf~mvr~~GLKlqvVMSFH 345 (701)
+.++|...|..||++||++|.+-= |.| .|..++|.| .++|++.+.+.|++|..=+-|.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 558999999999999999996531 222 355567754 7999999999999998877775
Q ss_pred ccC
Q 037037 346 ECG 348 (701)
Q Consensus 346 qCG 348 (701)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 565
No 77
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=47.61 E-value=50 Score=34.91 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCc---ccch---hHHHHHHHHHhcCcc-----EEEEEeee
Q 037037 278 KCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQD---YNWN---GYKKLFQMVSELKLK-----LQVVMSFH 345 (701)
Q Consensus 278 ~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~q---YdWS---gY~~Lf~mvr~~GLK-----lqvVMSFH 345 (701)
+++|.-...+++-.++|+ .|+..|++|||=|- ...|-. +.+. ..+++.+.|++...+ |...|--|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~--dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~~S~yPvIlslE~H 98 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPVIYHGHTLTTKIKFSDVLHTIKEHAFVTSEYPIILSIEDH 98 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCceEHHHHHHHHHHhhccCCCCCEEEEEccc
Confidence 356666677777777777 89999999999761 111221 1222 368899999998775 44455556
No 78
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=46.38 E-value=48 Score=37.34 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc---c-------------------chhHHHHHHHHHhcCccEE
Q 037037 282 IDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY---N-------------------WNGYKKLFQMVSELKLKLQ 339 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY---d-------------------WSgY~~Lf~mvr~~GLKlq 339 (701)
..++.|...|..||.+||++|-+--.+=-........| | ....++|++-+++.|+||.
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34788999999999999999977553221111011223 2 2347899999999999999
Q ss_pred EEEeeeccCCC
Q 037037 340 VVMSFHECGGN 350 (701)
Q Consensus 340 vVMSFHqCGGN 350 (701)
+=+-|--|+++
T Consensus 99 ~D~V~NH~~~~ 109 (479)
T PRK09441 99 ADVVLNHKAGA 109 (479)
T ss_pred EEECcccccCC
Confidence 98888778753
No 79
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.90 E-value=65 Score=33.78 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=47.4
Q ss_pred cccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 263 ~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
.+|+..|+=...|- .-.+++-++.+|++||+||.+.- + | ...-.++.+.+++.||++..++
T Consensus 87 ~~plv~m~Y~Npi~-------~~G~e~f~~~~~~aGvdgviipD-----l---p----~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLIF-------RKGVEEFYAKCKEVGVDGVLVAD-----L---P----LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHHh-------hhhHHHHHHHHHHcCCCEEEECC-----C---C----hHHHHHHHHHHHHCCCcEEEEE
Confidence 35666666554321 24778889999999999998873 1 2 2345789999999999999888
Q ss_pred eee
Q 037037 343 SFH 345 (701)
Q Consensus 343 SFH 345 (701)
+-+
T Consensus 148 ~P~ 150 (256)
T TIGR00262 148 APN 150 (256)
T ss_pred CCC
Confidence 766
No 80
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.89 E-value=69 Score=34.05 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=47.7
Q ss_pred cceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCc---ccchhHHHHHHHHHhcCccEEE
Q 037037 272 LGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQD---YNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 272 LdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~q---YdWSgY~~Lf~mvr~~GLKlqv 340 (701)
|-+|.-=|.+.+.+++...-++||++|+.-|.+-.|= =+.+|.. +-..+++.|.+.+++.||.+..
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 3344444678899999999999999999977766553 1222222 2266899999999999987654
No 81
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=45.29 E-value=27 Score=39.46 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHHHHHHH-HcCCceEEEeeeeee------e---ecCCCCcccchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 285 DGLLKQLRVLK-SINVDGVMVDCWWGI------V---EAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 285 ~al~~~L~aLK-~~GVdGVmvDVWWGi------V---E~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
..++.+|+.++ .+|+.-|- +||=+ + +..+...|||+.-+++++.+.+.|||..+-|+|=-
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR--~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p 108 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVR--FHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMP 108 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEE--ES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-
T ss_pred HHHHHHHHHHHhccCceEEE--EEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEech
Confidence 57888999987 69998885 44433 2 22222349999999999999999999999999843
No 82
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=43.95 E-value=23 Score=37.62 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCceEE-EeeeeeeeecCCCCccc---chhHHHHHHHHHhc-CccEEEEEeeeccCCCCCCCccccCchHH
Q 037037 289 KQLRVLKSINVDGVM-VDCWWGIVEAHTPQDYN---WNGYKKLFQMVSEL-KLKLQVVMSFHECGGNVGDDVCIPLPHWV 363 (701)
Q Consensus 289 ~~L~aLK~~GVdGVm-vDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~-GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 363 (701)
..++++.++|+++|. .|- |+ .-=+|.+|+ |-+.++|++-+++. |- .+| .|-|||. . ++-.|+
T Consensus 184 ~~~~~~~eaGad~i~i~d~-~~--~~lsp~~f~ef~~p~~k~i~~~i~~~~~~--~~i--lh~cg~~----~--~~~~~~ 250 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDS-WA--GALSPEDFEEFVLPYLKKIIEEVKARLPN--VPV--ILFAKGA----G--HLLEEL 250 (338)
T ss_pred HHHHHHHHcCCCEEEEECC-cc--ccCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCE--EEEeCCc----H--HHHHHH
Confidence 444556679999997 444 44 234577777 99999999999986 21 233 4556643 1 344455
Q ss_pred HhhhhcCCCeeeecC
Q 037037 364 AEIGRINPHIFFTDR 378 (701)
Q Consensus 364 ~e~g~~npDIfftDr 378 (701)
.+. ..|++-.|.
T Consensus 251 ~~~---~~~~~s~d~ 262 (338)
T TIGR01464 251 AET---GADVVGLDW 262 (338)
T ss_pred Hhc---CCCEEEeCC
Confidence 443 235555444
No 83
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.76 E-value=46 Score=33.80 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccE
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKl 338 (701)
.++..|++++++|.+||++ |+ |.. ...+++.+++++.||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCC---CCHHHHHHHHHHcCCcE
Confidence 4888899999999999999 22 211 24778888999999997
No 84
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=43.73 E-value=56 Score=38.10 Aligned_cols=65 Identities=23% Similarity=0.448 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCceEEE-ee---------------eeeeeec--CCC-Ccc---------cchhHHHHHHHHHhcC
Q 037037 284 PDGLLKQLRVLKSINVDGVMV-DC---------------WWGIVEA--HTP-QDY---------NWNGYKKLFQMVSELK 335 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmv-DV---------------WWGiVE~--~~P-~qY---------dWSgY~~Lf~mvr~~G 335 (701)
..++...|..||++||..|.+ +| -||.-=. -+| ..| -....++|++-+.+.|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 456778899999999999975 22 1553210 000 000 0345889999999999
Q ss_pred ccEEEEEee-eccC
Q 037037 336 LKLQVVMSF-HECG 348 (701)
Q Consensus 336 LKlqvVMSF-HqCG 348 (701)
+||..=+-| |-|+
T Consensus 243 i~VilDvV~NH~~~ 256 (605)
T TIGR02104 243 IRVIMDVVYNHTYS 256 (605)
T ss_pred CEEEEEEEcCCccC
Confidence 999998888 5443
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=43.54 E-value=65 Score=36.94 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=50.0
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC-CCccc-------------chhHHHHHHHHHhcCccEEEEEeeec
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT-PQDYN-------------WNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~-P~qYd-------------WSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
.-|.++|.+.|..||++||++|-+-=. .|..+ ...|+ +..+++|++.+++.|+||..=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 467799999999999999999966432 23211 23333 45678999999999999999888887
Q ss_pred cCC
Q 037037 347 CGG 349 (701)
Q Consensus 347 CGG 349 (701)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 763
No 86
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=42.86 E-value=75 Score=34.93 Aligned_cols=88 Identities=11% Similarity=0.180 Sum_probs=54.4
Q ss_pred ccCHHHHHHHHHHHHHc--CCceEEEeeeeeeeecCCCCcccch-----hHHHHHHHHHhcCccEEEEEeeeccCCCCCC
Q 037037 281 LIDPDGLLKQLRVLKSI--NVDGVMVDCWWGIVEAHTPQDYNWN-----GYKKLFQMVSELKLKLQVVMSFHECGGNVGD 353 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~--GVdGVmvDVWWGiVE~~~P~qYdWS-----gY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD 353 (701)
..+.+.+.+-++.+++. -+|++.+|.||+--. +.|.|. .-+++++.+++.|+|+.+.+.=|-+-
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~----- 109 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN----- 109 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET-----
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCC-----
Confidence 45688888888888875 479999999998722 245554 57999999999999976655444222
Q ss_pred CccccCchHHHhhhhcCCCeeeecCCCC
Q 037037 354 DVCIPLPHWVAEIGRINPHIFFTDREGR 381 (701)
Q Consensus 354 ~~~IPLP~WV~e~g~~npDIfftDr~G~ 381 (701)
+.. .- .-. +.+. ..++++++.+|.
T Consensus 110 ~~~-~~-~~~-~~~~-~~~~~v~~~~g~ 133 (441)
T PF01055_consen 110 DSP-DY-ENY-DEAK-EKGYLVKNPDGS 133 (441)
T ss_dssp TTT-B--HHH-HHHH-HTT-BEBCTTSS
T ss_pred CCC-cc-hhh-hhHh-hcCceeecccCC
Confidence 111 01 122 2232 237899999994
No 87
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=42.50 E-value=7.5 Score=33.32 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=17.5
Q ss_pred ccccccccchHHHhHHHHHh
Q 037037 506 DYNGYYGRFFLNWYSQVLVD 525 (701)
Q Consensus 506 ~w~S~YGkFFLsWYS~~Li~ 525 (701)
.|-|.+||-|++-|-..|+.
T Consensus 2 kwltsfgra~iscykslllt 21 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLT 21 (65)
T ss_pred chHHHHhHHHHHHHHHHHHH
Confidence 48999999999999988764
No 88
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=40.89 E-value=55 Score=40.39 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=69.7
Q ss_pred ChhHHhhhhHHHHhhhHHHHHH--HHhhhhcCCCCCCcccchHHHHHHHHHHhCcEECCCCCccCCCCCCCCCCCC---C
Q 037037 84 PLEEKERTKLRERHRRAITARI--LAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGSRTAGG---A 158 (701)
Q Consensus 84 ~~~ere~~~~rer~rrai~~~i--~~glr~~g~~~l~~~~d~n~v~~al~~~ag~~v~~dg~~y~~~~~~~~~~~~---~ 158 (701)
.--+||.+++|+-+||....-= -+|++. +-|. -.-+|.+.+-. |=+-++.|+-|-+..+..+..-. +
T Consensus 348 ~~y~re~~~k~~~f~r~~~~~~s~~r~~~s-s~~~-----l~sd~~~~~~~--~sl~~~n~~~~~~~~~~~~ss~P~l~s 419 (1036)
T KOG3531|consen 348 LDYVREGGKKREPFERKHSKSHSTRRGLYS-SPYG-----LVSDVPEQHRN--GSLYEANGTDSYNKHQNVHSSEPHIAS 419 (1036)
T ss_pred chhhhhcccccchhhcccccccccchhhcc-CCch-----hhhhccccccc--cceeecccccCcccccccccCCceecc
Confidence 3468888888887776543210 111111 0000 11123333222 55566677766655554321110 1
Q ss_pred CccccccCccccccccCCc-ccccccccccCCccccccccceeecCCCCCCCCCcccCCCCccccccccccc
Q 037037 159 SSMVTSSSSHMVSQQTPST-SLRGVSSGYRSSVEYNTCQMKGVFMPTPSPYDLSPIAQSQPSLVEDGREQTE 229 (701)
Q Consensus 159 ~~~~~~~s~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (701)
|..-+++. ...+.+|+. |-++-.. -+|+++. ||.++..+.-|.+-+|+|+.......+-+++.+..
T Consensus 420 s~~~~~~~--~~~~~s~~~~sr~~~~~--T~ptq~~-~~s~~pt~~~p~~ss~t~sp~~s~~si~Se~~~a~ 486 (1036)
T KOG3531|consen 420 SQPADHPF--SGTLDSPAGKSRTGAPA--TSPTQHR-CQSSVPTVEQPQRSSLTPSPHPSPISITSEKSQAP 486 (1036)
T ss_pred CCCCCCCC--cccccCcccccccCCCC--CCCCchh-ccccCCCcCCCCCCcCCCCCCCCccccccccccCc
Confidence 11111111 123444444 3333333 3566665 99999999999999999988777777777766443
No 89
>PRK12313 glycogen branching enzyme; Provisional
Probab=40.65 E-value=73 Score=37.34 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=46.4
Q ss_pred cccCHHHHHHHH-HHHHHcCCceEEE-eeeeeeeecCCCCcccchh-----------------HHHHHHHHHhcCccEEE
Q 037037 280 ELIDPDGLLKQL-RVLKSINVDGVMV-DCWWGIVEAHTPQDYNWNG-----------------YKKLFQMVSELKLKLQV 340 (701)
Q Consensus 280 ~l~~~~al~~~L-~aLK~~GVdGVmv-DVWWGiVE~~~P~qYdWSg-----------------Y~~Lf~mvr~~GLKlqv 340 (701)
..-+-+++...| ..||++||+.|.+ +|+ | .|...+|.| .++|++.+.+.||||..
T Consensus 165 ~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 165 RPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344567888885 9999999999984 443 2 244445544 89999999999999887
Q ss_pred EEeeeccC
Q 037037 341 VMSFHECG 348 (701)
Q Consensus 341 VMSFHqCG 348 (701)
=+-|--|+
T Consensus 239 D~V~nH~~ 246 (633)
T PRK12313 239 DWVPGHFP 246 (633)
T ss_pred EECCCCCC
Confidence 77774454
No 90
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=40.10 E-value=71 Score=37.05 Aligned_cols=64 Identities=16% Similarity=0.348 Sum_probs=47.7
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEE-eeeeeeeecCC-CCccc-------------chhHHHHHHHHHhcCccEEEEEeee
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMV-DCWWGIVEAHT-PQDYN-------------WNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~-P~qYd-------------WSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
.-|.+++.+.|..||.+||++|-+ +|+ +... ...|+ ...+++|++.+++.|+||..=+-|-
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~----~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~N 104 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFY----VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFN 104 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCC----CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 457899999999999999999965 443 1110 11222 3458999999999999999888877
Q ss_pred ccC
Q 037037 346 ECG 348 (701)
Q Consensus 346 qCG 348 (701)
-|+
T Consensus 105 H~s 107 (551)
T PRK10933 105 HTS 107 (551)
T ss_pred Ccc
Confidence 665
No 91
>PRK15452 putative protease; Provisional
Probab=40.10 E-value=30 Score=39.32 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEee
Q 037037 261 TPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDC 306 (701)
Q Consensus 261 ~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDV 306 (701)
..+++|||.+|.-+ .+ .+-+.+...|+.|+.+|||||.|-=
T Consensus 57 ~~g~kvyvt~n~i~--~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 57 ALGKKFYVVVNIAP--HN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HcCCEEEEEecCcC--CH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 45689999998432 22 2347788889999999999999853
No 92
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=40.03 E-value=23 Score=38.28 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCceEEEeeeeeee--ecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccC
Q 037037 298 NVDGVMVDCWWGIV--EAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 298 GVdGVmvDVWWGiV--E~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
|+|+|.+==.|+-. .--+|..|. |-+|++|++-+++.| .....+|.||
T Consensus 169 Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~---g~piilH~cG 221 (321)
T cd03309 169 EPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT---SALIVHHSCG 221 (321)
T ss_pred CCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc---CCceEEEeCC
Confidence 99999984445532 112355554 999999999999884 1235569998
No 93
>PLN02808 alpha-galactosidase
Probab=39.99 E-value=48 Score=37.26 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=44.3
Q ss_pred CHHHHHHHHHH-----HHHcCCceEEEeeeeeeeecCCCC-------cccchhHHHHHHHHHhcCccEEEEEe
Q 037037 283 DPDGLLKQLRV-----LKSINVDGVMVDCWWGIVEAHTPQ-------DYNWNGYKKLFQMVSELKLKLQVVMS 343 (701)
Q Consensus 283 ~~~al~~~L~a-----LK~~GVdGVmvDVWWGiVE~~~P~-------qYdWSgY~~Lf~mvr~~GLKlqvVMS 343 (701)
+.+.|.....+ ||.+|.+-|.||-=|-..++...+ +|- +|-+.|++.|++.|||+=.-..
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP-~G~~~lad~iH~~GlkfGiy~~ 118 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFP-SGIKALADYVHSKGLKLGIYSD 118 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcC-ccHHHHHHHHHHCCCceEEEec
Confidence 56777777777 689999999998666444443333 232 6899999999999999876543
No 94
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=39.91 E-value=69 Score=38.77 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCceEEEee-eeeeeecCCCCcccchhHHHHH----HHHHhcCccEEEEEeeeccCCCCCCCccccC
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC-WWGIVEAHTPQDYNWNGYKKLF----QMVSELKLKLQVVMSFHECGGNVGDDVCIPL 359 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~qYdWSgY~~Lf----~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPL 359 (701)
.+++..+++|..+|+.-|-+|- -| .|.-....-+|..|.+.+ +.+-+ |++--..+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 5788889999999999999983 23 454334556787775544 44443 6654556799999999775 1 2
Q ss_pred chHHHhhhhcCCCeeeecCCCCcCCcceeecc----Cccc---ccCCCchHHHHHHHHHHHHHHHhhhh
Q 037037 360 PHWVAEIGRINPHIFFTDREGRRNPECLSWGI----DKER---VLRGRTALEVYFDYMRSFRVEFDEFF 421 (701)
Q Consensus 360 P~WV~e~g~~npDIfftDr~G~rn~EyLSlgv----D~~p---Vl~GRTpiq~Y~DFM~SFr~~F~~~l 421 (701)
|. +.+-+-|.++-+ ..+.+.|-|.... ++.- |.+.++|-=.-.|-++.=-..+..++
T Consensus 654 ~~----i~~l~vD~~~lE-~~rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v 717 (758)
T PRK05222 654 DA----IAALDADVISIE-TSRSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVI 717 (758)
T ss_pred HH----HHhCCCCEEEEE-ecCCCchhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 22 235567877766 2222244444221 2211 23555554333344444444444444
No 95
>PLN00196 alpha-amylase; Provisional
Probab=39.86 E-value=84 Score=35.54 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccc--------------hhHHHHHHHHHhcCccEEEEEeeeccC
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW--------------NGYKKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdW--------------SgY~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
.++.|...|..||++||++|-+.- +.++.++..|+- ..+++|.+-+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P---~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPP---PSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 578899999999999999998764 235444445532 258999999999999998877776666
Q ss_pred C
Q 037037 349 G 349 (701)
Q Consensus 349 G 349 (701)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 4
No 96
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=39.82 E-value=30 Score=37.08 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCceEE-EeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccCCC
Q 037037 287 LLKQLRVLKSINVDGVM-VDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECGGN 350 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVm-vDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGN 350 (701)
+...++++.++||++|. .|= |+- --+|.+|+ |-+.++|++-+++.|=. .+|| |-|||.
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~-~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~il--h~cg~~ 249 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDS-WAG--ALSPADYREFVLPYMKRIVAELKREHPD-VPVI--LFGKGA 249 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecC-ccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEE--EEcCCc
Confidence 34455666779999997 444 442 24577777 99999999999987411 2333 777743
No 97
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=39.67 E-value=77 Score=38.55 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCceEEEee-eeeeeecCCCCcccchhHHHHH----HHHHhcCccEEEEEeeeccCCCCCCCccccC
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC-WWGIVEAHTPQDYNWNGYKKLF----QMVSELKLKLQVVMSFHECGGNVGDDVCIPL 359 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~qYdWSgY~~Lf----~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPL 359 (701)
.+++..+++|..+|+.-|-+|- -| .|...-..-+|..|.+.+ .++ ..|++-..-+++|-|-||..+
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal--~e~~~~~~~~~~~~l~~av~af~~~-~~~v~~~~~I~~H~C~gnf~~------ 656 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAAL--REGLPLRKSEHAFYLDWAVHSFRIT-NCGVQDTTQIHTHMCYSNFND------ 656 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcch--hhcCCcCccCHHHHHHHHHHHHHHH-HhcCCCCCEEEEEEecCCcHH------
Confidence 5788889999999999999983 33 243223457788787665 333 345644555788999999664
Q ss_pred chHHHh-hhhcCCCeeeecC
Q 037037 360 PHWVAE-IGRINPHIFFTDR 378 (701)
Q Consensus 360 P~WV~e-~g~~npDIfftDr 378 (701)
|.+ +.+-+-|.++-|-
T Consensus 657 ---I~~~i~~l~~D~~~~E~ 673 (766)
T PLN02475 657 ---IIHSIIDMDADVITIEN 673 (766)
T ss_pred ---HHHHHHhCCCCEEEEEc
Confidence 222 3456678777653
No 98
>PLN02433 uroporphyrinogen decarboxylase
Probab=39.63 E-value=27 Score=37.57 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---chhHHHHHHHHHhcCccEEEEEeeeccC
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WNGYKKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WSgY~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
...++++.++|++.|++.==|+- --+|.+|. |-+.++|++-+++.+-.. -+..|.||
T Consensus 182 ~~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG 241 (345)
T PLN02433 182 IEYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANG 241 (345)
T ss_pred HHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCC
Confidence 34455566799999855433443 24577776 999999999999863221 24568898
No 99
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=38.84 E-value=1.2e+02 Score=30.09 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC--CCcc-cc-------hhHHHHHHHHHhcCccEEEEEe
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHT--PQDY-NW-------NGYKKLFQMVSELKLKLQVVMS 343 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~--P~qY-dW-------SgY~~Lf~mvr~~GLKlqvVMS 343 (701)
+++.-+..|+.||++|++-|.+= |.-.+... |-++ ++ .-...+++.+.+.|+||.+=|-
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 45778899999999999999766 44333322 3333 11 1357889999999999987554
No 100
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.82 E-value=36 Score=34.47 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=47.6
Q ss_pred cccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE
Q 037037 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 263 ~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
.+++=|-+|...-... ....+....+.+...++|+|+|.+=++||.... +...+...-=.++.+.|++.|||+.+-
T Consensus 56 ~~~~vi~fp~g~~~~~--~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTE--PKGYDQIVAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp EEEEEESTTTSSSTHH--HHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ccceEEEeCCCCCccc--cccccchHHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4556666666532210 011111167888999999999999999999875 334444445555666667778887665
No 101
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.60 E-value=1.1e+02 Score=31.68 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=43.1
Q ss_pred cccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 263 ~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
.+|+.+|.=+..+ + .....-++.++++|++||.+... .+|. ...-.++.+.+++.||+..+.+
T Consensus 74 ~~Pl~lM~y~n~~-----~---~~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 74 SVPIILMTYLEDY-----V---DSLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred CCCEEEEEecchh-----h---hCHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 3577666543321 1 23455688889999999999421 0121 1345689999999999987776
Q ss_pred eee
Q 037037 343 SFH 345 (701)
Q Consensus 343 SFH 345 (701)
+-+
T Consensus 137 ~p~ 139 (244)
T PRK13125 137 SPK 139 (244)
T ss_pred CCC
Confidence 654
No 102
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=38.17 E-value=25 Score=35.75 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=17.6
Q ss_pred ccchhHHHHHHHHHhcCccEEEE
Q 037037 319 YNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 319 YdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
|+|+.|+.|++.+|+.||++.+.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA~ 108 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIAL 108 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEEE
T ss_pred CchHHHHHHHHHHHHCCCCEEEe
Confidence 58999999999999999988763
No 103
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=37.89 E-value=24 Score=35.35 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.0
Q ss_pred ecCCCCcCCccee-eccCcccccCCCchH
Q 037037 376 TDREGRRNPECLS-WGIDKERVLRGRTAL 403 (701)
Q Consensus 376 tDr~G~rn~EyLS-lgvD~~pVl~GRTpi 403 (701)
.....+-+.|-|+ |++++.+-++|||.+
T Consensus 107 v~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 107 STIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEcCCCcChhheeeecCCCCcccccceee
Confidence 4455666779999 599988899999975
No 104
>PRK00957 methionine synthase; Provisional
Probab=37.41 E-value=1.4e+02 Score=31.49 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCceEEEee-eeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchH
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDC-WWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHW 362 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~W 362 (701)
.+++...+++|+.+|++.|.+|= -|.. +-.++.-..+.++.+-+ ++++. ...|-|| |.. |-|
T Consensus 143 a~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~--v~lH~CG-~~~-------~i~ 205 (305)
T PRK00957 143 ARALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVP--VAMHVCG-DVS-------NII 205 (305)
T ss_pred HHHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCc--eEEEECC-CcH-------HHH
Confidence 36788899999999999888872 2321 22234444444444433 33443 4579995 321 112
Q ss_pred HHhhhhcCCCeeeecCCCC
Q 037037 363 VAEIGRINPHIFFTDREGR 381 (701)
Q Consensus 363 V~e~g~~npDIfftDr~G~ 381 (701)
-...+.+-|.++-|-.+.
T Consensus 206 -~~l~~~~vd~i~ld~~~~ 223 (305)
T PRK00957 206 -DDLLKFNVDILDHEFASN 223 (305)
T ss_pred -HHHHhCCCCEEEEeecCC
Confidence 223455668888887655
No 105
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=37.36 E-value=7.7 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.460 Sum_probs=25.4
Q ss_pred ceEEEeeCCcccCCC-cchhHHHHHHHHhc
Q 037037 664 LSFSYLRLGLGLMER-ENFMEFERFVKRMH 692 (701)
Q Consensus 664 ~~FTyLRm~~~lf~~-~n~~~F~~FVr~M~ 692 (701)
.=||++|||.+|+.| .+|..+..|+|.|.
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~ale 125 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALE 125 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHh
Confidence 349999999999999 47999999999884
No 106
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=36.99 E-value=2.1e+02 Score=29.34 Aligned_cols=47 Identities=9% Similarity=0.221 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
....|+.++++||.+|.+... +...++.+.++.++.+.++.+.+-+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~------------~~~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVST------------DPEDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEES------------SHHHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCC------------CHHHhHHHHHHHhcCCCeEEEEecCC
Confidence 567789999999998852211 12455588888999999999999999
No 107
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=36.42 E-value=38 Score=37.56 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCceEEEe----eeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 284 PDGLLKQLRVLKSINVDGVMVD----CWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvD----VWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
+-.+...+++|+.+|.+||++. +-|+..+.+. + .-+++|-+++++.||++..|.
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEee
Confidence 3456788999999999999853 1132221110 0 126789999999999987654
No 108
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=35.94 E-value=1e+02 Score=32.22 Aligned_cols=64 Identities=11% Similarity=0.174 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecC-CC--CcccchhHHHHHHHHHhcCccEEEEEeeeccC
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAH-TP--QDYNWNGYKKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P--~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
+.+++.+++.++.++..|++.|-+=.=++..-.. .+ ..++-...+++++.+++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 4678999999999999999999765533321111 11 2567778899999999999874 467554
No 109
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=35.72 E-value=83 Score=35.35 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCceEEEee-eeee----------eecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCC
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDC-WWGI----------VEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNV 351 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDV-WWGi----------VE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNV 351 (701)
+.+.+.+.++++|.+|++-+.+|- |++. -+. .+.+|= +|-+.|++-|++.|||.=.=+..=.+ |.
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v--~~ 131 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMV--SP 131 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEE--ES
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEeccccc--cc
Confidence 678899999999999999999986 5433 221 133332 58999999999999998776654333 23
Q ss_pred CCCccccCchHHHh
Q 037037 352 GDDVCIPLPHWVAE 365 (701)
Q Consensus 352 GD~~~IPLP~WV~e 365 (701)
+-...---|.|++.
T Consensus 132 ~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 132 DSDLYREHPDWVLR 145 (394)
T ss_dssp SSCHCCSSBGGBTC
T ss_pred hhHHHHhCccceee
Confidence 33444558999875
No 110
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.35 E-value=31 Score=39.01 Aligned_cols=33 Identities=30% Similarity=0.677 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCc-hHHHhhhhc
Q 037037 320 NWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLP-HWVAEIGRI 369 (701)
Q Consensus 320 dWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP-~WV~e~g~~ 369 (701)
.|.-|.+||..+- |-..++.+.|| +|+|++.++
T Consensus 6 Sw~nYc~LF~~iL-----------------~s~~p~~l~LPn~WlwDiiDE 39 (404)
T PF10255_consen 6 SWDNYCELFNYIL-----------------NSDGPVNLELPNQWLWDIIDE 39 (404)
T ss_pred HHHHHHHHHHHHh-----------------CCCCCcccCCCcHHHHHHHHH
Confidence 5999999999997 22235789999 599998743
No 111
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.95 E-value=62 Score=33.83 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEE--eeeeeeeecCCCCcccchhHHHHHHHHHhcCccE
Q 037037 261 TPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMV--DCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 261 ~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmv--DVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKl 338 (701)
...+||++..--..+ +..-...+..+++|+|+||+ +.|+..-+.+ -..+|++|++.+ ++.|
T Consensus 65 ~~~~~vi~gv~~~s~---------~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~-----i~~~~~~i~~~~---~~pi 127 (285)
T TIGR00674 65 NGRVPVIAGTGSNAT---------EEAISLTKFAEDVGADGFLVVTPYYNKPTQEG-----LYQHFKAIAEEV---DLPI 127 (285)
T ss_pred CCCCeEEEeCCCccH---------HHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHH-----HHHHHHHHHhcC---CCCE
Q ss_pred EEEEeeeccCCCCCCCccccCchHHHhhhhcCCC-eeeecCCC--CcCCcceeeccCcccccCC
Q 037037 339 QVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPH-IFFTDREG--RRNPECLSWGIDKERVLRG 399 (701)
Q Consensus 339 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfftDr~G--~rn~EyLSlgvD~~pVl~G 399 (701)
..-=.=..+| ++|+.-+++.-.+.|. +.+||-+| .+-.+++...-+++.||.|
T Consensus 128 ~lYn~P~~tg--------~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G 183 (285)
T TIGR00674 128 ILYNVPSRTG--------VSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAPDDFVVLSG 183 (285)
T ss_pred EEEECcHHhc--------CCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC
No 112
>PRK03906 mannonate dehydratase; Provisional
Probab=33.96 E-value=62 Score=36.32 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHH
Q 037037 290 QLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWV 363 (701)
Q Consensus 290 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 363 (701)
.|..+|++||.||.... ..-.....+.-..-+++-++|.++||+|-||=|+- |-++...-+|.+=
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~p-----v~~~Ik~g~~~rd 79 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESVP-----VHEDIKTGTPNRD 79 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCC-----ccHHHHcCCCCHH
Confidence 47889999999999753 21111233344456788899999999999986653 3345444555543
No 113
>PLN02564 6-phosphofructokinase
Probab=33.91 E-value=1.7e+02 Score=34.10 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHh
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAE 365 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 365 (701)
....-+..||..|++++.+= .|++ --.+=..|++.+++.|+++.+| -+|+=+
T Consensus 164 ~~~~iv~~L~~~~Id~LivI--------GGDG--S~~gA~~L~e~~~~~g~~i~VI----------------GIPKTI-- 215 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYII--------GGDG--TQKGASVIYEEIRRRGLKVAVA----------------GIPKTI-- 215 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEE--------CCch--HHHHHHHHHHHHHHcCCCceEE----------------Eecccc--
Confidence 45677889999999998651 2444 3456778888899999998775 255543
Q ss_pred hhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 037037 366 IGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMV 429 (701)
Q Consensus 366 ~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI 429 (701)
|.||.+||. |||.| |+++...+-..+.+++-...-.-=.|.|+
T Consensus 216 ----DNDI~~tD~---------T~GFd--------TAv~~~~~aI~~i~~tA~S~~~rv~iVEv 258 (484)
T PLN02564 216 ----DNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESVENGIGLVKL 258 (484)
T ss_pred ----cCCCcCccc---------CCCHH--------HHHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 669999985 78877 88999999999999887776521124555
No 114
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=33.76 E-value=83 Score=33.79 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=43.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc-cch-----hHHHHHHHHHhcCcc-----EEEEEeee
Q 037037 278 KCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY-NWN-----GYKKLFQMVSELKLK-----LQVVMSFH 345 (701)
Q Consensus 278 ~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY-dWS-----gY~~Lf~mvr~~GLK-----lqvVMSFH 345 (701)
+++|.-...++.-.++|+ .|+..|++|||=|- ...|-.| ++. ..+++.+.|++.+.+ |...|--|
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~--~gepvV~Hg~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 98 (260)
T cd08597 23 EDQLRGPSSVEGYVRALQ-RGCRCVELDCWDGP--NGEPVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILCIENH 98 (260)
T ss_pred CCeecCccCHHHHHHHHH-hCCCEEEEEeEcCC--CCCEEEEeCCccccceEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 356666666777677775 99999999999762 1123322 233 578899999988766 44445555
No 115
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=33.61 E-value=68 Score=36.30 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchH
Q 037037 290 QLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHW 362 (701)
Q Consensus 290 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~W 362 (701)
.|..+|++||+||....-- + .....+.=..-+++-++|.++||+|-||=|+. |-++...-+|.+
T Consensus 15 ~l~~irQ~G~~giV~al~~-~---p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~p-----v~e~Ik~g~~~r 78 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I---PNGEVWEKEEIRKRKEYIESAGLHWSVVESVP-----VHEAIKTGTGNY 78 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C---CCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCC-----ccHHHHcCCCcH
Confidence 4788999999999976521 1 11222333446778889999999999986653 334544445544
No 116
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=33.55 E-value=1.2e+02 Score=35.05 Aligned_cols=65 Identities=18% Similarity=0.375 Sum_probs=49.1
Q ss_pred ccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecC-CCCcc-------------cchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 281 LIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAH-TPQDY-------------NWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P~qY-------------dWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
.-+.+++...|..||.+||++|-+---. +.. ....| .....++|.+.+++.|+||..=+-|.-
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~---~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH 99 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFY---VSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNH 99 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcc---cCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 4577999999999999999999664322 221 11233 345688999999999999999999977
Q ss_pred cC
Q 037037 347 CG 348 (701)
Q Consensus 347 CG 348 (701)
|+
T Consensus 100 ~~ 101 (543)
T TIGR02403 100 TS 101 (543)
T ss_pred cc
Confidence 76
No 117
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=33.32 E-value=1.4e+02 Score=35.28 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCC--Ccccch---hHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcc
Q 037037 282 IDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTP--QDYNWN---GYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVC 356 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P--~qYdWS---gY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 356 (701)
...-..+.+++-||.+||++--.-+-|.-+=+.|. +..|.. +|+.|.+-..+.|++-.|-| ||
T Consensus 88 D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH----------- 155 (524)
T KOG0626|consen 88 DFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH----------- 155 (524)
T ss_pred hhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec-----------
Confidence 34557788999999999999999999999888887 567876 59999999999999998888 57
Q ss_pred ccCchHHHh
Q 037037 357 IPLPHWVAE 365 (701)
Q Consensus 357 IPLP~WV~e 365 (701)
--||+|+.+
T Consensus 156 wDlPq~LeD 164 (524)
T KOG0626|consen 156 WDLPQALED 164 (524)
T ss_pred CCCCHHHHH
Confidence 359999975
No 118
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=33.19 E-value=60 Score=32.65 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=43.1
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 282 IDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
.+...+..+++.+..+|+++|.+-+.+|-. +..+...-.+++.+++++.|+|+.+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 345667778899999999999999988833 2355666778888888999999755
No 119
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=32.87 E-value=35 Score=36.38 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCceEEEeeeeee-eecC--------CCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGI-VEAH--------TPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGi-VE~~--------~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
...|+.||.+|++-|- |. +|.. .|.+..|..|.+.++.++++|+++.+-|
T Consensus 143 ~e~l~~Lk~aG~~~~~-----~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 143 REVLERLKEAGLDSIP-----GGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHcCCCcCC-----CCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 7899999999999663 32 3321 2667799999999999999999965433
No 120
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=32.87 E-value=3.3e+02 Score=26.75 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
...-|+.++++||+.+.+-=.+ +..+..+.+++++. .++.+.+.+|
T Consensus 17 ~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 17 RDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 4677888899999988765221 22456677788887 7788888888
No 121
>PRK07094 biotin synthase; Provisional
Probab=32.75 E-value=83 Score=33.18 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC-------CcccchhHHHHHHHHHhcCccEEEEE
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTP-------QDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P-------~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
...|+.||.+|++.|.+.+ |...| ....|..+.+.++.++++|+++..-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl-----Es~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH-----ETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred HHHHHHHHHcCCCEEEecc-----ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceE
Confidence 4678899999999998654 43221 25789999999999999998764433
No 122
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=32.69 E-value=42 Score=35.78 Aligned_cols=125 Identities=21% Similarity=0.277 Sum_probs=78.4
Q ss_pred CCCCCCcccEEEeeccceeecCCcccCHHHHHHHHHHHHH-cCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcC
Q 037037 257 DFSGTPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKS-INVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELK 335 (701)
Q Consensus 257 ~~~~~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~-~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~G 335 (701)
+++..-+...-||.||.--+..++...++.+...||+||- +--.||. |+||+-|=..-.-..--+-.+.|+.+|
T Consensus 90 ~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 90 DYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred HHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
Confidence 4555677789999999765555778899999999999995 3333433 689976655545555556778888887
Q ss_pred cc--EEEEE-eeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCC------cc-eeeccCcccccC-CCchHH
Q 037037 336 LK--LQVVM-SFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNP------EC-LSWGIDKERVLR-GRTALE 404 (701)
Q Consensus 336 LK--lqvVM-SFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~------Ey-LSlgvD~~pVl~-GRTpiq 404 (701)
=. ...|. .||- -| +|+ ++||-|..|-+.- +- .+=+.|.-+||- +.--++
T Consensus 165 g~~~fklvhDTFHH-----------hL------agE---~~ffpdlTGLVHiSgV~d~~~~~~dm~d~hRVlv~~~Drl~ 224 (272)
T COG4130 165 GERVFKLVHDTFHH-----------HL------AGE---TEFFPDLTGLVHISGVEDPRLDVEDMRDPHRVLVGEKDRLD 224 (272)
T ss_pred CCceeeeehhhhhh-----------hh------ccc---ceecccccceeEecccCCCcccHhhhcCcceEEecCccccc
Confidence 54 33332 4552 22 232 6799998876532 11 123556666653 333344
Q ss_pred HH
Q 037037 405 VY 406 (701)
Q Consensus 405 ~Y 406 (701)
-|
T Consensus 225 N~ 226 (272)
T COG4130 225 NI 226 (272)
T ss_pred cH
Confidence 44
No 123
>PLN02229 alpha-galactosidase
Probab=32.61 E-value=1.1e+02 Score=35.11 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=48.9
Q ss_pred CHHHHHHHHHH-----HHHcCCceEEEeeeeeeeecCC-------CCcccchhHHHHHHHHHhcCccEEEEEe--eeccC
Q 037037 283 DPDGLLKQLRV-----LKSINVDGVMVDCWWGIVEAHT-------PQDYNWNGYKKLFQMVSELKLKLQVVMS--FHECG 348 (701)
Q Consensus 283 ~~~al~~~L~a-----LK~~GVdGVmvDVWWGiVE~~~-------P~qYdWSgY~~Lf~mvr~~GLKlqvVMS--FHqCG 348 (701)
+.+.|.....+ ||.+|.+-|.||-=|--.++.. |.+|- +|-+.|++.|++.|||+=.-.. ...|+
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC~ 156 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTCQ 156 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCcccC
Confidence 56777777777 5999999999987442222222 34444 6899999999999999866443 34677
Q ss_pred CCCC
Q 037037 349 GNVG 352 (701)
Q Consensus 349 GNVG 352 (701)
|+.|
T Consensus 157 ~~pG 160 (427)
T PLN02229 157 VRPG 160 (427)
T ss_pred CCCC
Confidence 6655
No 124
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=32.51 E-value=39 Score=35.65 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=23.4
Q ss_pred CcccCHHHHHHHHHHHHHcCCceEEEeeeee
Q 037037 279 CELIDPDGLLKQLRVLKSINVDGVMVDCWWG 309 (701)
Q Consensus 279 ~~l~~~~al~~~L~aLK~~GVdGVmvDVWWG 309 (701)
++|.-...+++-.++|+ .|+..|++|||=|
T Consensus 24 ~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 24 DQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 55666666676666776 8999999999976
No 125
>PRK08508 biotin synthase; Provisional
Probab=32.38 E-value=51 Score=34.68 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC----C---cccchhHHHHHHHHHhcCccEEEEEee
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTP----Q---DYNWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P----~---qYdWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
..+|++||.+|++.+-++ +|. ++ + -.+|.-..+.++.++++|+++-.-|=+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 678999999999999886 444 22 1 256888888888999999877554443
No 126
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=32.15 E-value=1.5e+02 Score=28.57 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=35.0
Q ss_pred HHHHHH-HHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcC--ccEEEEEeee
Q 037037 285 DGLLKQ-LRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELK--LKLQVVMSFH 345 (701)
Q Consensus 285 ~al~~~-L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~G--LKlqvVMSFH 345 (701)
+.|.++ ++.++..|.|||.+|..|.-.+.. -++..|.++.+.+|+.= .++...++.+
T Consensus 90 ~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~l~~~~~~ls~a~~ 149 (210)
T cd00598 90 AAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSALGAANYLLTIAVP 149 (210)
T ss_pred HHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHHhcccCcEEEEEec
Confidence 444444 455688999999999655433211 24778888888777751 1244444444
No 127
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=31.28 E-value=76 Score=32.81 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=50.8
Q ss_pred HHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCC------CCcCCcceeeccCcccccCCCchH
Q 037037 330 MVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDRE------GRRNPECLSWGIDKERVLRGRTAL 403 (701)
Q Consensus 330 mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~------G~rn~EyLSlgvD~~pVl~GRTpi 403 (701)
-|.+.+++ +||-.|..==. .+....-||.||+++- +||+|+-=+. .+|-++ -+=--| +.+---|
T Consensus 74 rI~~~~~~--iivDtH~~IkT-P~GylpgLP~~Vl~~l--~pd~ivllEaDp~~Il~RR~~D-~~r~Rd----~es~e~i 143 (189)
T COG2019 74 RIAEMALE--IIVDTHATIKT-PAGYLPGLPSWVLEEL--NPDVIVLLEADPEEILERRLRD-SRRDRD----VESVEEI 143 (189)
T ss_pred HHHHhhhc--eEEeccceecC-CCccCCCCcHHHHHhc--CCCEEEEEeCCHHHHHHHHhcc-cccccc----cccHHHH
Confidence 34444555 89999964322 2334566999999965 8888873222 111111 000011 1112236
Q ss_pred HHHHHHHHHHHHHHhhhhcCCcEEEE
Q 037037 404 EVYFDYMRSFRVEFDEFFQNGVISMV 429 (701)
Q Consensus 404 q~Y~DFM~SFr~~F~~~l~~gvI~eI 429 (701)
+.-.++-|.++-+.+-+.++ ++.=|
T Consensus 144 ~eHqe~nR~aA~a~A~~~ga-tVkIV 168 (189)
T COG2019 144 REHQEMNRAAAMAYAILLGA-TVKIV 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHhCC-eEEEE
Confidence 77778888888888888875 55444
No 128
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=31.28 E-value=41 Score=36.17 Aligned_cols=58 Identities=10% Similarity=0.195 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCceEEE---eeee-eeeecCCCCcccchhHHHHHHHHHhcCccEEEEEee
Q 037037 287 LLKQLRVLKSINVDGVMV---DCWW-GIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmv---DVWW-GiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
....|++||++|++.|.. +..- .+-.+-.|.+..+..+.+.+++++++||++-..|=|
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 368899999999998851 1110 011122455667778899999999999998666544
No 129
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=30.93 E-value=30 Score=35.03 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEE
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQ 339 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlq 339 (701)
++.|++.|.+||+.||..|.+ ++|...-..|.+. .|.+.++++||+|+
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEEE
Confidence 478999999999999999976 7787666667766 46688999998764
No 130
>PRK09505 malS alpha-amylase; Reviewed
Probab=30.88 E-value=1e+02 Score=37.02 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCceEEEe-eeeeeeec-----------CCCCcc-------------cchhHHHHHHHHHhcCcc
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVD-CWWGIVEA-----------HTPQDY-------------NWNGYKKLFQMVSELKLK 337 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvD-VWWGiVE~-----------~~P~qY-------------dWSgY~~Lf~mvr~~GLK 337 (701)
|.++|...|..||++||++|-+- ++=.+... .+...| ....+++|++-+++.|+|
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 67899999999999999999753 32111100 011111 345689999999999999
Q ss_pred EEEEEeeeccC
Q 037037 338 LQVVMSFHECG 348 (701)
Q Consensus 338 lqvVMSFHqCG 348 (701)
|..=+-|--++
T Consensus 308 VilD~V~NH~~ 318 (683)
T PRK09505 308 ILFDVVMNHTG 318 (683)
T ss_pred EEEEECcCCCc
Confidence 98876664444
No 131
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=30.25 E-value=94 Score=31.57 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCCCCCChhhHHHHHHhcCCCC
Q 037037 577 AAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTLPCHDRVGYNKILDNAKPLS 656 (701)
Q Consensus 577 ~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL~~~d~~ay~qI~~na~~~~ 656 (701)
..+.+.++++|..+.+.+++..|-.. .....|+..+.+|+..+..-.|-|.=.+.. ...++..+|+..++
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~-----~~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk--- 211 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKV-----DEQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLK--- 211 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCC-----CCCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHH---
Confidence 35788999999999999988665442 112457888899887665544554433221 23468999998877
Q ss_pred CCCCCccceEEEeeCCcc
Q 037037 657 DPDGRHFLSFSYLRLGLG 674 (701)
Q Consensus 657 ~~~~~~~~~FTyLRm~~~ 674 (701)
-.+|+|.++.+.
T Consensus 212 ------~~Gy~fvtl~el 223 (224)
T TIGR02884 212 ------EQGYTFKSLDDL 223 (224)
T ss_pred ------HCCCEEEEhHHc
Confidence 345888887754
No 132
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=30.17 E-value=50 Score=34.98 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCc---eEEEeee-eeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 287 LLKQLRVLKSINVD---GVMVDCW-WGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 287 l~~~L~aLK~~GVd---GVmvDVW-WGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
.+..|++||.+|++ ++-.+.. -.+-..-.|++..|..|.+..+.++++|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
No 133
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=29.83 E-value=44 Score=41.10 Aligned_cols=67 Identities=31% Similarity=0.573 Sum_probs=49.9
Q ss_pred ccCHHHHHHHHHHHH-----HcC---CceEEEeeeeeeeecCCCCcc---cchhHH---HHHHHHHhcCccEEEEEeeec
Q 037037 281 LIDPDGLLKQLRVLK-----SIN---VDGVMVDCWWGIVEAHTPQDY---NWNGYK---KLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 281 l~~~~al~~~L~aLK-----~~G---VdGVmvDVWWGiVE~~~P~qY---dWSgY~---~Lf~mvr~~GLKlqvVMSFHq 346 (701)
|+|...+-.+|-.|- .+| +.-||+ |.--+..++-| +|.-|+ +|.++++++|.+|+- ||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMl----GYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl---FHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVML----GYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL---FHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEe----cccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE---Ecc
Confidence 566666666664431 233 777777 66666666666 899997 589999999999985 999
Q ss_pred cCCCCCCC
Q 037037 347 CGGNVGDD 354 (701)
Q Consensus 347 CGGNVGD~ 354 (701)
-||.||-.
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999864
No 134
>PLN02692 alpha-galactosidase
Probab=29.70 E-value=87 Score=35.67 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=41.2
Q ss_pred CHHHHHHHHHH-----HHHcCCceEEEee-eeeeeecCC-------CCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 283 DPDGLLKQLRV-----LKSINVDGVMVDC-WWGIVEAHT-------PQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 283 ~~~al~~~L~a-----LK~~GVdGVmvDV-WWGiVE~~~-------P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
+.+.+.....+ ||.+|.+-|.||. |++.. +.. |.+|= +|-+.|++.|++.|||+=.-.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-rd~~G~~~~d~~kFP-~G~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-RDEKGNLVPKKSTFP-SGIKALADYVHSKGLKLGIYS 141 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-CCCCCCeeeChhhcC-CcHHHHHHHHHHCCCceEEEe
Confidence 55666666554 4888999999987 65543 222 33333 789999999999999986544
No 135
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=29.66 E-value=84 Score=34.49 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCceEEEee---eeeeeec-----CCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCC
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC---WWGIVEA-----HTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNV 351 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV---WWGiVE~-----~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNV 351 (701)
+.+...|++|+..|+|||-+|+ ||=..+. .++-+=.=.-|.+|.+.+|.+.=-+.+| -|-|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi---~qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI---PQNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE---ecccHhh
Confidence 5788999999999999998876 4332222 1222233334899999999876545555 3555443
No 136
>PRK07360 FO synthase subunit 2; Reviewed
Probab=29.58 E-value=82 Score=34.54 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeee-e--------cCCCCcccchhHHHHHHHHHhcCccEEEEEee
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWGIV-E--------AHTPQDYNWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWGiV-E--------~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
.+.+|+.||++|++.+- |.. | .-.|++-.+..|.+..++++++||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 46789999999999993 211 1 11477888889999999999999999665555
No 137
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=29.38 E-value=48 Score=33.39 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=6.4
Q ss_pred hHHhhhhHHHHh
Q 037037 86 EEKERTKLRERH 97 (701)
Q Consensus 86 ~ere~~~~rer~ 97 (701)
.|-|..|.|||-
T Consensus 113 eeiEKQrA~eRY 124 (174)
T KOG3375|consen 113 EEIEKQRAKERY 124 (174)
T ss_pred HHHHHHHHHHHH
Confidence 344555666663
No 138
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=28.96 E-value=1.2e+02 Score=32.37 Aligned_cols=76 Identities=21% Similarity=0.423 Sum_probs=57.4
Q ss_pred CcccEEEeecc---ceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccE
Q 037037 262 PYVPVYVMLPL---GVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 262 ~~vpVyVMLPL---dvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKl 338 (701)
..+|||+|.== |.|-++. ..+.+....+..|.+|++||.+=+- ..+++.|=.--++|.+.+. ||-+
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 56889999732 2333333 3478999999999999999987542 4689999999999988877 6666
Q ss_pred EEEEeeeccC
Q 037037 339 QVVMSFHECG 348 (701)
Q Consensus 339 qvVMSFHqCG 348 (701)
--=++|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 6667787776
No 139
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.82 E-value=1.4e+02 Score=33.13 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=48.3
Q ss_pred cEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 265 PVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 265 pVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
|+++-.| |.+.+.+.+...-+.||.+||.-+--=.|==-.-..+-+-..+.+|+.|++.+++.||.+..
T Consensus 119 ~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t 187 (360)
T PRK12595 119 QSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS 187 (360)
T ss_pred eeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4555566 56788899999999999999876663333201111123455678899999999999998755
No 140
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.35 E-value=32 Score=42.70 Aligned_cols=7 Identities=14% Similarity=0.339 Sum_probs=3.1
Q ss_pred CCchhhh
Q 037037 57 NNNQFQH 63 (701)
Q Consensus 57 ~~~~~~~ 63 (701)
+|..|+.
T Consensus 1467 ~D~df~~ 1473 (1516)
T KOG1832|consen 1467 IDGDFME 1473 (1516)
T ss_pred CChHHHH
Confidence 3444544
No 141
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=28.25 E-value=2.2e+02 Score=27.50 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=64.8
Q ss_pred HHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhhhhcC
Q 037037 291 LRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRIN 370 (701)
Q Consensus 291 L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~n 370 (701)
..+||+.||+.|++=+.=|.- |-=..|..=.+.++++||++-+..-++.| |..+. . .+.+
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a---------~--~qA~ 71 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA---------E--AQAD 71 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH---------H--HHHH
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH---------H--HHHH
Confidence 567799999999999875542 22245777788899999998877777765 32221 0 0111
Q ss_pred CCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 037037 371 PHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQ 422 (701)
Q Consensus 371 pDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~ 422 (701)
+|.+.-+....-.|-+++|-+--...........++++.|.+++....|
T Consensus 72 ---~f~~~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 72 ---YFLNQVKGGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp ---HHHHCTHTSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---HHHHHhcccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 2222221122333334566442233445578889999999999976554
No 142
>PLN02417 dihydrodipicolinate synthase
Probab=27.98 E-value=2.4e+02 Score=29.71 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccc--hhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccC
Q 037037 282 IDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNW--NGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPL 359 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdW--SgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPL 359 (701)
++.+......++.+++|+|+||+ ..|--|.. .+-.+.|+-|.++. ||+=+|-=+ ...+.|
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~---------~~P~y~~~~~~~i~~~f~~va~~~----pi~lYn~P~-----~tg~~l 141 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALH---------INPYYGKTSQEGLIKHFETVLDMG----PTIIYNVPG-----RTGQDI 141 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEE---------cCCccCCCCHHHHHHHHHHHHhhC----CEEEEEChh-----HhCcCC
Q ss_pred chHHHhhhhcCCC-eeeecCCCCcCCcceeeccCcccccCC
Q 037037 360 PHWVAEIGRINPH-IFFTDREGRRNPECLSWGIDKERVLRG 399 (701)
Q Consensus 360 P~WV~e~g~~npD-IfftDr~G~rn~EyLSlgvD~~pVl~G 399 (701)
|.-++..-.+.|. +-++|.+|+ ..+..+-.+.+.||.|
T Consensus 142 ~~~~l~~l~~~pni~giKdss~~--~~~~~~~~~~~~v~~G 180 (280)
T PLN02417 142 PPEVIFKIAQHPNFAGVKECTGN--DRVKQYTEKGILLWSG 180 (280)
T ss_pred CHHHHHHHhcCCCEEEEEeCCCc--HHHHHHhcCCeEEEEc
No 143
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=27.88 E-value=1.5e+02 Score=30.20 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 285 DGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
..+...|..+.++|+++|.+ |.+-.....+..++=...++|-+++++.||++ +.|
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l----s~h 64 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV----SVH 64 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE----EEE
Confidence 35788999999999999988 33333222122223335888999999999984 557
No 144
>PRK04326 methionine synthase; Provisional
Probab=27.78 E-value=96 Score=32.96 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCceEEEee-eeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCC
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC-WWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNV 351 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNV 351 (701)
+++...+++|+.+|++.|.+|= =|.. .|. +|.-+.+.++.+-+ +++..+ ..|-|.||.
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~v--~lH~C~G~~ 219 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAKL--GLHVCYGDY 219 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCEE--EEEEeCCCc
Confidence 5788889999999999998873 2221 232 33444444444433 445433 569998775
No 145
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=27.73 E-value=1e+02 Score=33.15 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=43.9
Q ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc---cchh---HHHHHHHHHhcCcc---EEEEEee
Q 037037 278 KCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY---NWNG---YKKLFQMVSELKLK---LQVVMSF 344 (701)
Q Consensus 278 ~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY---dWSg---Y~~Lf~mvr~~GLK---lqvVMSF 344 (701)
+++|.-....+...++|+ .|+--|++|||=| +...|-.| .+.. .+++.+.|++...+ +=+|+|+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlsl 95 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSL 95 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 356766677777778887 5999999999987 22234433 2222 78899999998776 3344544
No 146
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=27.62 E-value=2.2e+02 Score=31.01 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=50.1
Q ss_pred CCCCChhHHhhhhHHHHhhhHHHHHHHHhhhhcCCCCCCcccchH----------HHHHHHHHHhCcEECCCCCccCCCC
Q 037037 80 RRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADIN----------DVIAALAREAGWVVLPDGTTFPSRS 149 (701)
Q Consensus 80 ~r~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~l~~~~d~n----------~v~~al~~~ag~~v~~dg~~y~~~~ 149 (701)
|+.-+.--|...-+|||||=.=.-.-|.-|.+----|+-+|---= |=|.+|..+++= .+++-.|+.|.
T Consensus 111 rks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~--~~~~~~~~~g~ 188 (284)
T KOG3960|consen 111 RKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ--AEKGLAYAPGP 188 (284)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc--cchhhhhcCCC
Confidence 555555566667789999976666778888775433333333323 335578888763 34555577777
Q ss_pred CCCCCCCCCCccccccCc
Q 037037 150 QGSRTAGGASSMVTSSSS 167 (701)
Q Consensus 150 ~~~~~~~~~~~~~~~~s~ 167 (701)
.|. ..+.++..++++.|
T Consensus 189 ~p~-~~~Ps~~~~~~sd~ 205 (284)
T KOG3960|consen 189 LPG-DGAPSSPRSNCSDF 205 (284)
T ss_pred CCC-CCCCCCCCcccccc
Confidence 663 23334444444443
No 147
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=27.42 E-value=1.5e+02 Score=31.78 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHHHHHHc--CCceEEEee-eeeeeecCCCCcccch-----hHHHHHHHHHhcCccEEEEEeeeccCCCCC
Q 037037 281 LIDPDGLLKQLRVLKSI--NVDGVMVDC-WWGIVEAHTPQDYNWN-----GYKKLFQMVSELKLKLQVVMSFHECGGNVG 352 (701)
Q Consensus 281 l~~~~al~~~L~aLK~~--GVdGVmvDV-WWGiVE~~~P~qYdWS-----gY~~Lf~mvr~~GLKlqvVMSFHqCGGNVG 352 (701)
..+.+.+...++.+++. -+|.|.+|. ||+ ..+-..|+|. .-+++++-+++.|+|+.+++.=|-+-
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~---- 92 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP---- 92 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC----
Confidence 45778888888888875 789999996 664 1111256665 56788888999999988866433211
Q ss_pred CCccccCchHHHhhhhcCCCeeeecCCCCc
Q 037037 353 DDVCIPLPHWVAEIGRINPHIFFTDREGRR 382 (701)
Q Consensus 353 D~~~IPLP~WV~e~g~~npDIfftDr~G~r 382 (701)
.-+. .+.+++ .+++.++..|..
T Consensus 93 -----~~~~--y~e~~~-~g~~v~~~~g~~ 114 (319)
T cd06591 93 -----ETEN--YKEMDE-KGYLIKTDRGPR 114 (319)
T ss_pred -----CChh--HHHHHH-CCEEEEcCCCCe
Confidence 1122 334433 478899887764
No 148
>PRK15108 biotin synthase; Provisional
Probab=27.21 E-value=88 Score=34.15 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCCcc-------cchhHHHHHHHHHhcCccE
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY-------NWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY-------dWSgY~~Lf~mvr~~GLKl 338 (701)
...|++||++|||+|-+++ |. .|..| +|....+..+.++++|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
No 149
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=26.88 E-value=1.2e+02 Score=30.35 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
...+..-|+.++.+|.+||++.. ++.. ..++....+|-+.+++.||++-.+..+.
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~------~~~~~~~~~l~~~l~~~gl~i~~~~~~~ 68 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLF------PADYKELAELKELLADYGLEITSLAPFS 68 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccC------CchhhhHHHHHHHHHHcCcEEEeecccC
Confidence 45678899999999999999877 2222 2223238999999999999986544433
No 150
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.29 E-value=2.3e+02 Score=31.58 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCC------CCcccchhHHHHHHHHHhcCccEEEEEeee-ccCCCCCCCccccCch
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHT------PQDYNWNGYKKLFQMVSELKLKLQVVMSFH-ECGGNVGDDVCIPLPH 361 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~------P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH-qCGGNVGD~~~IPLP~ 361 (701)
.++++..++|++.|.+-+ .+-|... ...-.+.-++++.+++++.||++++.+|.- .|- |.-.++ |.
T Consensus 125 ~die~A~~~g~~~v~i~~--s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p----~~~r~~-~~ 197 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFA--SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP----IEGPVP-PS 197 (347)
T ss_pred HHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC----ccCCCC-HH
Confidence 455556678999877665 4433221 233456678889999999999999777542 222 222243 66
Q ss_pred HHHhhhhc----CC-CeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHH
Q 037037 362 WVAEIGRI----NP-HIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEF 417 (701)
Q Consensus 362 WV~e~g~~----np-DIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F 417 (701)
.|.+..+. -. .|.+.|--|. -+|.++| ++++..+++|
T Consensus 198 ~l~~~~~~~~~~Gad~I~l~DT~G~------------------a~P~~v~-~lv~~l~~~~ 239 (347)
T PLN02746 198 KVAYVAKELYDMGCYEISLGDTIGV------------------GTPGTVV-PMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcCC------------------cCHHHHH-HHHHHHHHhC
Confidence 77664321 11 3555555554 3677776 5556666554
No 151
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=26.14 E-value=62 Score=32.34 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCceEEEee
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC 306 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV 306 (701)
+++++.|+.|+++|||||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999863
No 152
>PLN02884 6-phosphofructokinase
Probab=26.02 E-value=2.8e+02 Score=31.60 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHhh
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEI 366 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~ 366 (701)
++.-++.||+.|++++.+ = .|.+ -..+=.+|.+.+++.|+++.+| -+|+=+
T Consensus 132 ~~~i~~~L~~~~Id~Liv-------I-GGdg--S~~~a~~L~~~~~~~g~~i~vI----------------GIPkTI--- 182 (411)
T PLN02884 132 TSDIVDSIEARGINMLFV-------L-GGNG--THAGANAIHNECRKRKMKVSVV----------------GVPKTI--- 182 (411)
T ss_pred HHHHHHHHHHcCCCEEEE-------E-CCch--HHHHHHHHHHHHHHcCCCceEE----------------eccccc---
Confidence 566778899999998864 1 2444 3346677888888888887665 255533
Q ss_pred hhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 037037 367 GRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMV 429 (701)
Q Consensus 367 g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI 429 (701)
|.||..|| .|+|.| |+++...+.+...+..-.+-..--.|.||
T Consensus 183 ---DNDi~~tD---------~TiGFd--------TAv~~~~~ai~~l~~tA~s~~~rv~iVEv 225 (411)
T PLN02884 183 ---DNDILLMD---------KTFGFD--------TAVEEAQRAINSAYIEAHSAYHGIGLVKL 225 (411)
T ss_pred ---cCCCcCcc---------cCCCHH--------HHHHHHHHHHHHHHHhhhccCCcEEEEEe
Confidence 66999988 467777 88999999999998886442211135555
No 153
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=25.83 E-value=1.4e+02 Score=31.75 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHH
Q 037037 285 DGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVA 364 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~ 364 (701)
..|...|+..|.+|.+.|++- .|--...=.-..++.+++++.|||+.+=+.-.- -..+..++...|+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~----~~~~~~~~~~~~i~ 138 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSEVGKKS----PEKDSELTPDDRIK 138 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEeccccccC----CcccccCCHHHHHH
Confidence 788999999999999999873 333445556678899999999999987543321 11122356667766
Q ss_pred hh
Q 037037 365 EI 366 (701)
Q Consensus 365 e~ 366 (701)
.+
T Consensus 139 ~~ 140 (237)
T TIGR03849 139 LI 140 (237)
T ss_pred HH
Confidence 54
No 154
>PLN02705 beta-amylase
Probab=25.58 E-value=62 Score=38.73 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=22.3
Q ss_pred cceeehhchHHHHHHHHHHHHhh-CC-----cccCCCCCCCCCCCCCCCC
Q 037037 454 GIGEFQCYDQYLLKNLRKASEAR-GH-----SFWARGPDNAGSYNSRPHE 497 (701)
Q Consensus 454 GiGEFQCYDkymlasLk~aA~~~-Gh-----p~WG~gP~nAg~YNs~P~~ 497 (701)
|+=-.|||..||. +||...... +. -+=|.||..-=.|=|-|..
T Consensus 382 GRTplq~Y~DFM~-SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~ 430 (681)
T PLN02705 382 GRTGIEVYFDFMR-SFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPER 430 (681)
T ss_pred CCCHHHHHHHHHH-HHHHHHHHhccCCceeEEEeccCCCccccCCCCccc
Confidence 4444677777774 455555542 11 2334566555455554543
No 155
>PRK12677 xylose isomerase; Provisional
Probab=25.47 E-value=1.6e+02 Score=32.92 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCceEEEee---e-eeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 286 GLLKQLRVLKSINVDGVMVDC---W-WGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDV---W-WGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
.+...+.+++.+|++||++.. | |+.... ..+ ...++|-+++++.|||+..|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeEEEe
Confidence 377889999999999998821 1 211111 001 147889999999999987654
No 156
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.46 E-value=1.7e+02 Score=31.34 Aligned_cols=67 Identities=12% Similarity=0.253 Sum_probs=46.9
Q ss_pred cccCHHHHHHHHHHHHHcC--CceEEEee-eeeeee-cCCCCcccch-----hHHHHHHHHHhcCccEEEEEeeec
Q 037037 280 ELIDPDGLLKQLRVLKSIN--VDGVMVDC-WWGIVE-AHTPQDYNWN-----GYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 280 ~l~~~~al~~~L~aLK~~G--VdGVmvDV-WWGiVE-~~~P~qYdWS-----gY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
...+.+.+..-++.+++.| +|+|.+|. |++..- +..-+.|+|. --+++++-+++.|+|+.+++.=|-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v 94 (317)
T cd06598 19 GYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFV 94 (317)
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcc
Confidence 3457788888888888755 79999998 554321 1123345554 467888889999999999886553
No 157
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.37 E-value=76 Score=35.11 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
..|+.+++.|+++|-.+.|.=+.. .. .+.. -..++++.++++||||+|-
T Consensus 249 ~~l~~i~a~~a~~i~P~~~~l~~~-~~--~~~~-~~~~~v~~Ah~~GL~V~~W 297 (356)
T cd08560 249 PSMDELKARGVNIIAPPIWMLVDP-DE--NGKI-VPSEYAKAAKAAGLDIITW 297 (356)
T ss_pred HHHHHHHhCCccEecCchhhcccc-cc--cccc-CCHHHHHHHHHcCCEEEEE
Confidence 568999999999887755433333 12 2223 5678999999999998874
No 158
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=25.30 E-value=1.3e+02 Score=34.79 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeec
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHE 346 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHq 346 (701)
+.+.|....+.++++|+.+||+|+.+| |++-+.|.+.+++.+|-|+.=-+||.
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~g 276 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGHA 276 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccce
Confidence 479999999999999999999997765 34556677777788877776666663
No 159
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=25.25 E-value=95 Score=33.72 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCceEEEeeeee-eeecC--------CCCcccchhHHHHHHHHHhcCccEEEEEee
Q 037037 287 LLKQLRVLKSINVDGVMVDCWWG-IVEAH--------TPQDYNWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 287 l~~~L~aLK~~GVdGVmvDVWWG-iVE~~--------~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
.+..|++||++|++.+- | -+|.. .|++..|.-+.+..+.++++|+++-.-|=|
T Consensus 149 ~~e~l~~LkeAGld~~~-----~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMP-----GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCC-----CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 46679999999998664 2 23332 266778899999999999999998655444
No 160
>PRK06256 biotin synthase; Validated
Probab=25.16 E-value=78 Score=33.65 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCCcc-------cchhHHHHHHHHHhcCccEEEEEee
Q 037037 288 LKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY-------NWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 288 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY-------dWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
...|+.||++|++.|.+. +|. .+..| +|..+.+.++.++++|+++..-+=|
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE
No 161
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=24.94 E-value=2.1e+02 Score=27.69 Aligned_cols=80 Identities=10% Similarity=0.114 Sum_probs=47.9
Q ss_pred EEeceeeeccCCCCChh-hh---hccccCCCCCCchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHH
Q 037037 545 AKLSGFHWWYKTASHAA-EL---TAGFYNPCNRDGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQV 620 (701)
Q Consensus 545 aKV~GIHWWY~t~SHAA-EL---TAGYYNt~~rDGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV 620 (701)
+++.|+||+|....+.. .. .-|+ .....-|.++++.|++. +...+++++.......+.....+-+.++..|
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 48899999997554321 11 1132 23344588999999884 5566677764332111222134567888888
Q ss_pred HHHHHhcCC
Q 037037 621 MNAAWDVCT 629 (701)
Q Consensus 621 ~~aA~~~GV 629 (701)
.......++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 887776554
No 162
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.88 E-value=1.9e+02 Score=29.55 Aligned_cols=53 Identities=19% Similarity=0.033 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhc-CccEE
Q 037037 285 DGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSEL-KLKLQ 339 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~-GLKlq 339 (701)
..+...|+.+|++|.++|.+++=+.. +...+. .+=...++|.+++++. |+.+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~~~i~ 63 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPR-SWLSRP-LKKERAEKFKAIAEEGPSICLS 63 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCC-ccCCCC-CCHHHHHHHHHHHHHcCCCcEE
Confidence 56788999999999999998762110 000000 0115678888888888 66644
No 163
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=24.85 E-value=1.4e+02 Score=31.72 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCc------ccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCcccc
Q 037037 285 DGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQD------YNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIP 358 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~q------YdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 358 (701)
+++.+++++|..+|+.-|-+|-= .+-+.-.... .+|.-+.+..+.+- .+. -+.+..|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGE--DATVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STT--TSEEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCC--CCEEEEEecCccchhhH---
Confidence 57888999999999999999854 2222111111 13332322222221 133 34569999999854321
Q ss_pred CchHHHhhhhcCCCeeeecCCCCc
Q 037037 359 LPHWVAEIGRINPHIFFTDREGRR 382 (701)
Q Consensus 359 LP~WV~e~g~~npDIfftDr~G~r 382 (701)
-...+.+-|.|+-+=...+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2334566787776555544
No 164
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=24.50 E-value=1.5e+02 Score=31.90 Aligned_cols=56 Identities=29% Similarity=0.443 Sum_probs=39.9
Q ss_pred CcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---c---hhHHHHHHHHHhcCcc
Q 037037 279 CELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---W---NGYKKLFQMVSELKLK 337 (701)
Q Consensus 279 ~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---W---SgY~~Lf~mvr~~GLK 337 (701)
++|.-....+...++|+ .|+--|++|||=| +...|-.|- + =..+++.+.|++.+.+
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~ 85 (257)
T cd08593 24 DQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFK 85 (257)
T ss_pred CcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhcc
Confidence 56666667777777777 8999999999987 222344332 1 2358899999998765
No 165
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=24.46 E-value=1.5e+02 Score=37.87 Aligned_cols=66 Identities=15% Similarity=0.338 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEe-ee-eeee-ec----------CCCCcccchh-------------------------H
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVD-CW-WGIV-EA----------HTPQDYNWNG-------------------------Y 324 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvD-VW-WGiV-E~----------~~P~qYdWSg-------------------------Y 324 (701)
+..+|...|..||.+||..|.+= |. .+-| |. .+...|+|-| +
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 45899999999999999999653 32 1112 10 0123455653 7
Q ss_pred HHHHHHHHhcCccEEEEEeeeccC
Q 037037 325 KKLFQMVSELKLKLQVVMSFHECG 348 (701)
Q Consensus 325 ~~Lf~mvr~~GLKlqvVMSFHqCG 348 (701)
++|++-+.+.||+|..=+-|--|+
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~ 581 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTA 581 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccccccc
Confidence 888888889999988766664443
No 166
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=24.24 E-value=1.7e+02 Score=31.58 Aligned_cols=64 Identities=19% Similarity=0.409 Sum_probs=44.3
Q ss_pred CcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc-ch-----hHHHHHHHHHhcCcc-----EEEEEeee
Q 037037 279 CELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN-WN-----GYKKLFQMVSELKLK-----LQVVMSFH 345 (701)
Q Consensus 279 ~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd-WS-----gY~~Lf~mvr~~GLK-----lqvVMSFH 345 (701)
++|.-....+...++|+ .|+--|++|||=| +...|-.|- |+ ..+++.+.|++...+ |...|--|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~H 98 (258)
T cd08629 24 DQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENH 98 (258)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 56666667777777777 8999999999988 222344332 22 578999999998776 44444445
No 167
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=24.12 E-value=6e+02 Score=27.02 Aligned_cols=130 Identities=21% Similarity=0.163 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE------------------Eee
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV------------------MSF 344 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV------------------MSF 344 (701)
+++.+...++.++..|+++|.+.+--- +++ ....|. .|-++.+..++++.+- +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~---~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWD---DLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHH---HHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEE
Confidence 567788888999999999998865321 121 113443 2333333334443321 334
Q ss_pred eccCCCCCCCccccCchHHHhhhhcCC-CeeeecCCCCcC----CcceeeccCcccccCCCchHHH--------HHHHHH
Q 037037 345 HECGGNVGDDVCIPLPHWVAEIGRINP-HIFFTDREGRRN----PECLSWGIDKERVLRGRTALEV--------YFDYMR 411 (701)
Q Consensus 345 HqCGGNVGD~~~IPLP~WV~e~g~~np-DIfftDr~G~rn----~EyLSlgvD~~pVl~GRTpiq~--------Y~DFM~ 411 (701)
|.+||-..| ..+|-...+.++.+.-+ +|-..=--|-++ .++|.+|+|- |.-||--+.. -.++++
T Consensus 200 ~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~--V~ig~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADA--VLIGRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCE--EEEcHHHHHHHHhcCHHHHHHHHH
Confidence 455655433 23444445555543322 344443444444 4688899997 4445544422 246788
Q ss_pred HHHHHHhhhhc
Q 037037 412 SFRVEFDEFFQ 422 (701)
Q Consensus 412 SFr~~F~~~l~ 422 (701)
.++.++...+.
T Consensus 277 ~l~~el~~~m~ 287 (299)
T cd02809 277 ILRDELERAMA 287 (299)
T ss_pred HHHHHHHHHHH
Confidence 88888777663
No 168
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=24.04 E-value=1.8e+02 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=47.3
Q ss_pred eeccceeecCCcccCHHHHHHHHHHHH-----HcCCc----eEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEE
Q 037037 269 MLPLGVINLKCELIDPDGLLKQLRVLK-----SINVD----GVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQ 339 (701)
Q Consensus 269 MLPLdvV~~~~~l~~~~al~~~L~aLK-----~~GVd----GVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlq 339 (701)
++|-+.|. ++.+.|.++...-|++|| .+|.. -|.|++|+--+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred eccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 44444443 577899999999999998 34542 4678888877665 688899999999997
Q ss_pred EEEe
Q 037037 340 VVMS 343 (701)
Q Consensus 340 vVMS 343 (701)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 7754
No 169
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=24.02 E-value=2.7e+02 Score=34.85 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc-------------cchhHHHHHHHHHhcCccEEEEEeeeccCC
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY-------------NWNGYKKLFQMVSELKLKLQVVMSFHECGG 349 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY-------------dWSgY~~Lf~mvr~~GLKlqvVMSFHqCGG 349 (701)
+.+++.+.|..||.+||+.|-+---+--.. .+...| ....+++|.+-+++.||||..=+-+.-|+.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~-gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARP-GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCC-CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 347899999999999999997654321110 012222 357899999999999999999888877773
Q ss_pred C
Q 037037 350 N 350 (701)
Q Consensus 350 N 350 (701)
+
T Consensus 97 ~ 97 (879)
T PRK14511 97 G 97 (879)
T ss_pred c
Confidence 3
No 170
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.87 E-value=3.4e+02 Score=31.31 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHh
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAE 365 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 365 (701)
.++.-++.||..|++.+.+= .|++ --.+=.+|.+.+++.||++.+| -+|+=+
T Consensus 160 ~~~~iv~~L~~~~I~~L~vI--------GGdg--T~~gA~~l~ee~~~~g~~I~VI----------------GIPKTI-- 211 (443)
T PRK06830 160 DPEEIVDTLERMNINILFVI--------GGDG--TLRGASAIAEEIERRGLKISVI----------------GIPKTI-- 211 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEe--------CCch--HHHHHHHHHHHHHHhCCCceEE----------------Eecccc--
Confidence 46677899999999998651 2444 3345667888898899998876 256543
Q ss_pred hhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 037037 366 IGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMV 429 (701)
Q Consensus 366 ~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI 429 (701)
|.||.+||. |||.| |+++...+..+..+++-...-.-=.|.|+
T Consensus 212 ----DNDi~~td~---------S~GFd--------TAv~~a~~aI~~~~~eA~s~~~rv~iVEv 254 (443)
T PRK06830 212 ----DNDINFIQK---------SFGFE--------TAVEKATEAIRCAHVEANGAPNGIGLVKL 254 (443)
T ss_pred ----CCCCcCccc---------CCCHH--------HHHHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 669999884 67777 88999999999999988876431125555
No 171
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=23.86 E-value=57 Score=36.36 Aligned_cols=112 Identities=17% Similarity=0.334 Sum_probs=74.0
Q ss_pred eeeeecCCCCcccchhHHHHHHHHHhcCccEE--EEEeeeccCCCCCCCccccCchHHHhhhhcCCCeeeecCCCCcCCc
Q 037037 308 WGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQ--VVMSFHECGGNVGDDVCIPLPHWVAEIGRINPHIFFTDREGRRNPE 385 (701)
Q Consensus 308 WGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlq--vVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfftDr~G~rn~E 385 (701)
|...|. .++.|+|..-.++++.+|+.||+++ ..+.-| ..|.|+.. |+
T Consensus 69 we~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~------------q~P~W~~~-----------~e------- 117 (345)
T COG3693 69 WEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHS------------QVPDWLFG-----------DE------- 117 (345)
T ss_pred cccccC-CCCccCccchHHHHHHHHHcCCeeccceeeecc------------cCCchhhc-----------cc-------
Confidence 999997 7999999999999999999999864 333333 47888742 11
Q ss_pred ceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhh-cCCcEEEEEecccCCCCCCCCCCCCCCCCcCCcceeehhchHH
Q 037037 386 CLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFF-QNGVISMVVVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQY 464 (701)
Q Consensus 386 yLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l-~~gvI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDky 464 (701)
+.+.--++++++++..--..|..-+ .=+||.|+- --. | +|.++ -|..-+.| ..|
T Consensus 118 -----------~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~--g-----~~R~s-~w~~~~~g-----pd~ 172 (345)
T COG3693 118 -----------LSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQ--G-----SLRRS-AWYDGGTG-----PDY 172 (345)
T ss_pred -----------cChHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCC--c-----hhhhh-hhhccCCc-----cHH
Confidence 1122336788888777777766622 112455542 222 2 44433 37666777 489
Q ss_pred HHHHHHHHHHh
Q 037037 465 LLKNLRKASEA 475 (701)
Q Consensus 465 mlasLk~aA~~ 475 (701)
+.-+|+.|.++
T Consensus 173 I~~aF~~Area 183 (345)
T COG3693 173 IKLAFHIAREA 183 (345)
T ss_pred HHHHHHHHHhh
Confidence 99999988873
No 172
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.84 E-value=1.7e+02 Score=30.64 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEE--eeeeeeeecCCCCcccchhHHHHHHHHHhcCccE
Q 037037 261 TPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMV--DCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 261 ~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmv--DVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKl 338 (701)
...+||++..--..+ +......+.++++|+|+||+ +.|...-+.. -..+|++|++-+ +|.+
T Consensus 68 ~~~~~vi~gv~~~~~---------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~-----i~~~~~~ia~~~---~~pv 130 (292)
T PRK03170 68 NGRVPVIAGTGSNST---------AEAIELTKFAEKAGADGALVVTPYYNKPTQEG-----LYQHFKAIAEAT---DLPI 130 (292)
T ss_pred CCCCcEEeecCCchH---------HHHHHHHHHHHHcCCCEEEECCCcCCCCCHHH-----HHHHHHHHHhcC---CCCE
Q ss_pred EEEEeeeccCCCCCCCccccCchHHHhhhhcCCC-eeeecCCCC--cCCcceeeccCcccccCCCchH
Q 037037 339 QVVMSFHECGGNVGDDVCIPLPHWVAEIGRINPH-IFFTDREGR--RNPECLSWGIDKERVLRGRTAL 403 (701)
Q Consensus 339 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfftDr~G~--rn~EyLSlgvD~~pVl~GRTpi 403 (701)
..--.--.+| +.|+.=++..-.++|. +.++|.+|. +-.+++...-|++.||.|.-.+
T Consensus 131 ~lYn~P~~~g--------~~l~~~~~~~L~~~p~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~ 190 (292)
T PRK03170 131 ILYNVPGRTG--------VDILPETVARLAEHPNIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL 190 (292)
T ss_pred EEEECccccC--------CCCCHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh
No 173
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=23.78 E-value=1.1e+02 Score=32.71 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHHcCCceEEEeeeeeeeecCCCCcc---cchhHHHHHHHHHhcCccE
Q 037037 291 LRVLKSINVDGVMVDCWWGIVEAHTPQDY---NWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 291 L~aLK~~GVdGVmvDVWWGiVE~~~P~qY---dWSgY~~Lf~mvr~~GLKl 338 (701)
+..++.+|++|||+|-+ .+.+..-| ++..-.+..+.+|+.||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56778999999999976 44454444 4555666778888899975
No 174
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.67 E-value=2.6e+02 Score=22.81 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
.++..++++|+.|.+.|- |.+-. +-.++.++.+.+++.|+|+.+
T Consensus 16 ~~~~~~~~a~~~g~~~v~------iTDh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIA------ITDHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEE------EeeCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 366788999999999984 55542 567788999999999988765
No 175
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.54 E-value=1.1e+02 Score=32.47 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=54.0
Q ss_pred CCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 261 TPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 261 ~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
...|+||-.-.|--+. .-...+...|+.+|.+|.+.|+|. .+--...=.--.++.+++++.|||+.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiS--------dGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEIS--------DGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEec--------CCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3557788777666442 126789999999999999999984 233344455677889999999999877
Q ss_pred EEeeeccCCCCCCCccccCchHHHhh
Q 037037 341 VMSFHECGGNVGDDVCIPLPHWVAEI 366 (701)
Q Consensus 341 VMSFHqCGGNVGD~~~IPLP~WV~e~ 366 (701)
=..-. +.+.+....+..|+..+
T Consensus 132 EvG~K----~~~~~~~~~~~~~i~~~ 153 (244)
T PF02679_consen 132 EVGKK----DPESDFSLDPEELIEQA 153 (244)
T ss_dssp EES-S----SHHHHTT--CCHHHHHH
T ss_pred cccCC----CchhcccCCHHHHHHHH
Confidence 55422 11222223366788764
No 176
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=23.52 E-value=66 Score=39.94 Aligned_cols=71 Identities=23% Similarity=0.481 Sum_probs=43.3
Q ss_pred eeeeeeeecCCCCcc---cchhHHH---HHHHHHhcCccEEEEEeeeccCCCCCCCccccCch-HHHh-hhhcCCCeeee
Q 037037 305 DCWWGIVEAHTPQDY---NWNGYKK---LFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPH-WVAE-IGRINPHIFFT 376 (701)
Q Consensus 305 DVWWGiVE~~~P~qY---dWSgY~~---Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~-WV~e-~g~~npDIfft 376 (701)
.|-=|.--+..++-| +|+-|++ |.+++++.|+|+.+ ||.+||.||-.-. |.=. .+.+ .|..+-.|-+|
T Consensus 563 eVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGGg-p~~~ai~~qp~g~~~g~iR~T 638 (911)
T PRK00009 563 EVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGGG-PAYAAILSQPPGSVKGRIRVT 638 (911)
T ss_pred EEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCCC-hHHHHHHhCCCccccCceEEE
Confidence 333355444333333 7998875 56667899988876 9999999987644 2111 2221 14444467777
Q ss_pred cCC
Q 037037 377 DRE 379 (701)
Q Consensus 377 Dr~ 379 (701)
-|.
T Consensus 639 eQG 641 (911)
T PRK00009 639 EQG 641 (911)
T ss_pred eec
Confidence 664
No 177
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=23.32 E-value=5.4e+02 Score=27.19 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEE
Q 037037 261 TPYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQV 340 (701)
Q Consensus 261 ~~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqv 340 (701)
...+||.|..-.++ +......+..+++|+|+||+ -.---...+-.+-.+.|.-|-++ .+ .|
T Consensus 67 ~~~~pvi~gv~~~t----------~~~i~~a~~a~~~Gad~v~~-------~pP~y~~~~~~~i~~~f~~v~~~-~~-~p 127 (289)
T cd00951 67 AGRVPVLAGAGYGT----------ATAIAYAQAAEKAGADGILL-------LPPYLTEAPQEGLYAHVEAVCKS-TD-LG 127 (289)
T ss_pred CCCCCEEEecCCCH----------HHHHHHHHHHHHhCCCEEEE-------CCCCCCCCCHHHHHHHHHHHHhc-CC-CC
Q ss_pred EEeeeccCCCCCCCccccCchHHHhhhhc-CCCe-eeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHh
Q 037037 341 VMSFHECGGNVGDDVCIPLPHWVAEIGRI-NPHI-FFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFD 418 (701)
Q Consensus 341 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~-npDI-fftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~ 418 (701)
||-++..| +.||.=++..-.+ .|.| .+||.+|. +..+..+++.+.+.|.
T Consensus 128 i~lYn~~g--------~~l~~~~l~~L~~~~pnivgiKds~~d---------------------~~~~~~~~~~~~~~~~ 178 (289)
T cd00951 128 VIVYNRAN--------AVLTADSLARLAERCPNLVGFKDGVGD---------------------IELMRRIVAKLGDRLL 178 (289)
T ss_pred EEEEeCCC--------CCCCHHHHHHHHhcCCCEEEEEeCCCC---------------------HHHHHHHHHhcCCCeE
Q ss_pred hhhc
Q 037037 419 EFFQ 422 (701)
Q Consensus 419 ~~l~ 422 (701)
=|.|
T Consensus 179 v~~G 182 (289)
T cd00951 179 YLGG 182 (289)
T ss_pred EEeC
No 178
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=23.30 E-value=68 Score=35.83 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHc-CCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEee
Q 037037 290 QLRVLKSI-NVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSF 344 (701)
Q Consensus 290 ~L~aLK~~-GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSF 344 (701)
.|..+++. ||+||..-..+--+ ...++-..=+++-+.|.++||+|-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47778886 99999998866322 22334445678888999999999998653
No 179
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=23.22 E-value=2.1e+02 Score=30.00 Aligned_cols=59 Identities=22% Similarity=0.131 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCceEEEee-eeeeeecCCCCcccchhHHHHHHHHHh-cCccEEEEEeeeccCC
Q 037037 285 DGLLKQLRVLKSINVDGVMVDC-WWGIVEAHTPQDYNWNGYKKLFQMVSE-LKLKLQVVMSFHECGG 349 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~qYdWSgY~~Lf~mvr~-~GLKlqvVMSFHqCGG 349 (701)
+.+...+++|+.+|++.|.+|= -|...-. + ..+.....+++.+.+.+ .|-+ ...|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 5677889999999999888862 2222211 1 35788888889988876 3322 24699996
No 180
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=23.16 E-value=2.2e+02 Score=34.62 Aligned_cols=82 Identities=10% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCceEEEe--eeeeeeecCCCCcccchhHHHHH-HHHHhc--CccEEEEEeeeccCCCCCCCccccC
Q 037037 285 DGLLKQLRVLKSINVDGVMVD--CWWGIVEAHTPQDYNWNGYKKLF-QMVSEL--KLKLQVVMSFHECGGNVGDDVCIPL 359 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvD--VWWGiVE~~~P~qYdWSgY~~Lf-~mvr~~--GLKlqvVMSFHqCGGNVGD~~~IPL 359 (701)
.+++..++.|.++|+.-|-+| .| +|.-.-..-+|..|.+.+ +.++.+ |++--.-+.+|-|-||+++-
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL---~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i----- 646 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPAL---REGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEI----- 646 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchh---hhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHH-----
Confidence 477888999999999999998 34 332222223666665443 333332 55322334899999987631
Q ss_pred chHHHhhhhcCCCeeeec
Q 037037 360 PHWVAEIGRINPHIFFTD 377 (701)
Q Consensus 360 P~WV~e~g~~npDIfftD 377 (701)
=.++ .+.+-|.++-|
T Consensus 647 ~~~l---~~l~vD~i~lE 661 (750)
T TIGR01371 647 IESI---ADLDADVISIE 661 (750)
T ss_pred HHHH---HhCCCCEEEEE
Confidence 1223 34556766666
No 181
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.14 E-value=1.6e+02 Score=31.56 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcc---cch---hHHHHHHHHHhcCcc-----EEEEEeeec
Q 037037 278 KCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDY---NWN---GYKKLFQMVSELKLK-----LQVVMSFHE 346 (701)
Q Consensus 278 ~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qY---dWS---gY~~Lf~mvr~~GLK-----lqvVMSFHq 346 (701)
+++|.-....++..++|+ .|+--|++|||=|--....|-.| .+. ..+++.+.|++...+ |...|--|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 101 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENHV 101 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 367777777888888885 89999999999874222234443 222 368899999997766 555555574
No 182
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=23.09 E-value=1.6e+02 Score=30.48 Aligned_cols=59 Identities=7% Similarity=-0.049 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCccccccCC
Q 037037 576 YAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPVASENTL 637 (701)
Q Consensus 576 Y~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~vaGENAL 637 (701)
...+++.|-+.|+...++|+.-.--+. .--...=-++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~---~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDE---SFLGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--G---GGTT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCh---HHCCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 667888888899999999987432221 00111223689999999999999999999974
No 183
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=22.86 E-value=4.2e+02 Score=31.62 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=72.8
Q ss_pred cccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccC
Q 037037 280 ELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPL 359 (701)
Q Consensus 280 ~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPL 359 (701)
++.+++.+++-++.||++|++++.+= .|++-+ +.=..|.+..++.|.+++|| -+
T Consensus 172 k~~~~e~~~~~~~~l~~l~Id~LViI--------GGddS~--~~A~~Lae~~~~~g~~i~VI----------------GV 225 (568)
T PLN02251 172 KIETPEQFKQAEETATKLDLDGLVVI--------GGDDSN--TNACLLAEYFRAKNLKTRVI----------------GC 225 (568)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEe--------CCchHH--HHHHHHHHHHHhcCCCeeEE----------------Ee
Confidence 56788999999999999999998652 244433 34557888888889888876 14
Q ss_pred chHHHhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 037037 360 PHWVAEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMV 429 (701)
Q Consensus 360 P~WV~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI 429 (701)
|+=+ |.||..||-+ .|+|.| |++..|.+.+...+..-.+.-.--.|.||
T Consensus 226 PKTI------DNDL~~td~e-------~s~GFd--------TA~k~~a~~I~ni~~da~S~~k~~~~Vev 274 (568)
T PLN02251 226 PKTI------DGDLKSKEVP-------TSFGFD--------TACKIYSEMIGNVMIDARSTGKYYHFVRL 274 (568)
T ss_pred CceE------eCCCCCCcCC-------CCCCHH--------HHHHHHHHHHHHHHHHHHhhCCEEEEEEe
Confidence 4433 5578765522 388888 78999999999998876665321025565
No 184
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=22.68 E-value=1.7e+02 Score=32.41 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=45.2
Q ss_pred cCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchh-----HHHHHHHHHhcCccEEE
Q 037037 277 LKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNG-----YKKLFQMVSELKLKLQV 340 (701)
Q Consensus 277 ~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSg-----Y~~Lf~mvr~~GLKlqv 340 (701)
--|.+.+.+++...-+.||.+|..-+...+| +..-.-|.|.| ++-|++.+++.||.+..
T Consensus 99 GPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 99 GPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred ecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 3567889999999999999999985554444 33333356655 99999999999998765
No 185
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=22.58 E-value=6.7e+02 Score=26.19 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
.++.+..-|++|.++|+..|.+|+-- .|+ ..++=.+...|++.+++.|=++..-..|+
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~vvl~~~~~ 119 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRVVLASVFS 119 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeEEEEEecc
Confidence 56789999999999999999999954 443 22221288999999999986555443344
No 186
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=22.53 E-value=71 Score=39.94 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=34.9
Q ss_pred cCCceEEEeeeeeeeecCCCCcc---cchhHHH---HHHHHHhcCccEEEEEeeeccCCCCCCC
Q 037037 297 INVDGVMVDCWWGIVEAHTPQDY---NWNGYKK---LFQMVSELKLKLQVVMSFHECGGNVGDD 354 (701)
Q Consensus 297 ~GVdGVmvDVWWGiVE~~~P~qY---dWSgY~~---Lf~mvr~~GLKlqvVMSFHqCGGNVGD~ 354 (701)
.|.--||+ |.--+..++-| +|+-|++ |.+++++.|+|+.+ ||.+||.||-.
T Consensus 616 ~~~qeVMl----GYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~---FhGrGGsvgRG 672 (974)
T PTZ00398 616 NGIQEIMI----GYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRF---FHGRGGSVSRG 672 (974)
T ss_pred CCeEEEEE----ecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCC
Confidence 56666665 44333222222 7888875 56668899999876 99999999854
No 187
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=22.48 E-value=1.5e+02 Score=31.37 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=28.3
Q ss_pred HHHHHHH-HHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHh
Q 037037 284 PDGLLKQ-LRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSE 333 (701)
Q Consensus 284 ~~al~~~-L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~ 333 (701)
++.|.++ ++-++..|.|||.+|+| -.....+. .=+...|.+|++-+|+
T Consensus 93 R~~fi~s~~~~~~~~~~DGidiD~w-e~p~~~~~-~~d~~~~~~~l~el~~ 141 (318)
T cd02876 93 REKLIKLLVTTAKKNHFDGIVLEVW-SQLAAYGV-PDKRKELIQLVIHLGE 141 (318)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEech-hhhcccCC-HHHHHHHHHHHHHHHH
Confidence 3445444 55668999999999974 22211111 1156667776666654
No 188
>PF14851 FAM176: FAM176 family
Probab=22.34 E-value=1.1e+02 Score=30.66 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=15.8
Q ss_pred hHHhhhhHHHHhhhHHHHHHHHhhhhcCCCCCC
Q 037037 86 EEKERTKLRERHRRAITARILAGLRRHGNYNLR 118 (701)
Q Consensus 86 ~ere~~~~rer~rrai~~~i~~glr~~g~~~l~ 118 (701)
+|-|+.+|=|||-| |-.-| -+-|+-.+|
T Consensus 117 e~~e~A~rlEeRe~-iirEI----W~n~~~d~~ 144 (153)
T PF14851_consen 117 EELERAQRLEERER-IIREI----WMNGQPDIL 144 (153)
T ss_pred HHHHHHHHHHHHHH-HHHHH----HHhcCCCCC
Confidence 67777777776654 33333 344554444
No 189
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=22.13 E-value=4.3e+02 Score=30.64 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHHHh
Q 037037 286 GLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAE 365 (701)
Q Consensus 286 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 365 (701)
.+..-++.|+..|++++.+= .|++ --.+=.+|++.+++.|+++.+|- +|+=+
T Consensus 164 ~~~~iv~~L~~~~I~~L~vI--------GGdg--T~~~A~~L~ee~~~~g~~I~VIG----------------IPKTI-- 215 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTL--------GGDG--THRGALAIYKELRRRKLNISVVG----------------IPKTI-- 215 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEe--------CCch--HHHHHHHHHHHHHHhCCCceEEE----------------ecccc--
Confidence 56778889999999998652 2333 34566788999999999987752 66544
Q ss_pred hhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhhcCCcEEEEEecccCCCCC
Q 037037 366 IGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFFQNGVISMVVVGLGPCGEL 439 (701)
Q Consensus 366 ~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l~~gvI~eI~VGLGPaGEL 439 (701)
|.||.+||. |||.| |+++...+..++.+.+-...-. -|-=|+|=..=||-|
T Consensus 216 ----DNDI~~td~---------S~GFd--------TAv~~~~~aI~~~~~eA~S~~~--~v~iVEvMGR~sG~L 266 (459)
T PTZ00286 216 ----DNDIPIIDE---------SFGFQ--------TAVEEAQNAIRAAYVEAKSAKN--GVGIVKLMGRDSGFI 266 (459)
T ss_pred ----CCCCCCccc---------CcCch--------HHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcchhHH
Confidence 669999994 78888 8899999999999998777542 233334333355544
No 190
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=22.00 E-value=8.1e+02 Score=26.71 Aligned_cols=92 Identities=10% Similarity=0.149 Sum_probs=57.8
Q ss_pred cccCHHHHHHHHHHHHHc--CCceEEEeeeeeeeecCCCCcccc-----hhH--HHHHHHHHhcCccEEEEEeeeccCCC
Q 037037 280 ELIDPDGLLKQLRVLKSI--NVDGVMVDCWWGIVEAHTPQDYNW-----NGY--KKLFQMVSELKLKLQVVMSFHECGGN 350 (701)
Q Consensus 280 ~l~~~~al~~~L~aLK~~--GVdGVmvDVWWGiVE~~~P~qYdW-----SgY--~~Lf~mvr~~GLKlqvVMSFHqCGGN 350 (701)
...+.+.+..-++.+++. -+|+|.+|+=|- . .-+.|.| ..- +++++-+++.|+|+.+++-=|-+-.+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYM--D--RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccc--c--CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 345678888888888874 579999996553 1 1234443 344 88899999999999888755543221
Q ss_pred CCCCccccCchHHHhhhhcCCCeeeecCCCCc
Q 037037 351 VGDDVCIPLPHWVAEIGRINPHIFFTDREGRR 382 (701)
Q Consensus 351 VGD~~~IPLP~WV~e~g~~npDIfftDr~G~r 382 (701)
.+. .-|. .+.+.+ .+.|.++..|..
T Consensus 95 ~~~----~~~~--~~e~~~-~g~~v~~~~g~~ 119 (339)
T cd06602 95 PTG----SYPP--YDRGLE-MDVFIKNDDGSP 119 (339)
T ss_pred CCC----CCHH--HHHHHH-CCeEEECCCCCE
Confidence 110 1222 333433 367888888854
No 191
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=21.82 E-value=79 Score=33.97 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=25.9
Q ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEeeeee
Q 037037 278 KCELIDPDGLLKQLRVLKSINVDGVMVDCWWG 309 (701)
Q Consensus 278 ~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWG 309 (701)
+++|.-...++...++|+ .|+--|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg 53 (257)
T cd08595 23 SDQLVGPSDLDGYVSALR-KGCRCLEIDCWDG 53 (257)
T ss_pred CCcccCcccHHHHHHHHH-hCCcEEEEEeecC
Confidence 357777778888888888 8999999999965
No 192
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.77 E-value=9.2e+02 Score=25.08 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=96.3
Q ss_pred ccCHHHHHHHHHHHHH--cCCceEEEeeeeeeeecCCCCccc-----chhHHHHHHHHHhcCccEEEEEeeeccCCCCCC
Q 037037 281 LIDPDGLLKQLRVLKS--INVDGVMVDCWWGIVEAHTPQDYN-----WNGYKKLFQMVSELKLKLQVVMSFHECGGNVGD 353 (701)
Q Consensus 281 l~~~~al~~~L~aLK~--~GVdGVmvDVWWGiVE~~~P~qYd-----WSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD 353 (701)
..+.+.+..-.+.+++ +-+|+|.+|.+|.--- +.--++ |.--+++++-+++.|+|+.+++.-+-
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v------- 90 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI------- 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH-------
Confidence 4677888888888887 5679999999998422 222113 44568899999999998888775442
Q ss_pred CccccCchHHHhhhhcC-----CCeeeecCCCCcCCcceeeccCcccc--cCCCchH---HHHHHH-HHHHHHHHhhhhc
Q 037037 354 DVCIPLPHWVAEIGRIN-----PHIFFTDREGRRNPECLSWGIDKERV--LRGRTAL---EVYFDY-MRSFRVEFDEFFQ 422 (701)
Q Consensus 354 ~~~IPLP~WV~e~g~~n-----pDIfftDr~G~rn~EyLSlgvD~~pV--l~GRTpi---q~Y~DF-M~SFr~~F~~~l~ 422 (701)
-.|..+.-+.. -|-+-+|- .|...+-.+...- .++.+.. ..|.-. .++..+.+...-.
T Consensus 91 ------~~w~~~~~~~~~~~~Gvdg~w~D~-----~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~ 159 (265)
T cd06589 91 ------REWWAEVVKKLLVSLGVDGFWTDM-----GEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSK 159 (265)
T ss_pred ------HHHHHHHHHHhhccCCCCEEeccC-----CCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcC
Confidence 77888755432 13344442 2322221111000 0011211 233332 3444444444321
Q ss_pred CCcEEEEEecccCCCCCCCCCCCCCC---CCcCCcceeehhchHHHHHHHHHHHHh--hCCcccCCCCCCCCCCCC
Q 037037 423 NGVISMVVVGLGPCGELRYPSCPVKH---GWRYPGIGEFQCYDQYLLKNLRKASEA--RGHSFWARGPDNAGSYNS 493 (701)
Q Consensus 423 ~gvI~eI~VGLGPaGELRYPSYp~~~---GW~yPGiGEFQCYDkymlasLk~aA~~--~Ghp~WG~gP~nAg~YNs 493 (701)
..-..-+.-+ |=+|-=||+..=..+ .| ..|+.+++..... .|-|.||. |.|.+..
T Consensus 160 ~~r~~~~sRs-~~~Gsqry~~~W~GD~~stW------------~~l~~~i~~~l~~~l~G~~~~g~---DigGf~~ 219 (265)
T cd06589 160 NKRPFILSRS-GYAGSQRYAGMWSGDNTSTW------------GYLRSQIPAGLTMSMSGIPFVGS---DIGGFTG 219 (265)
T ss_pred CCCeEEEEcC-CcccccCcCceeCCcccCCH------------HHHHHHHHHHHhhhccCCcccCC---CcCCCCC
Confidence 1112223333 335777886664322 14 3366677666555 48889886 5665543
No 193
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=21.76 E-value=3.1e+02 Score=31.27 Aligned_cols=89 Identities=19% Similarity=0.071 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCCCCccccCchHH
Q 037037 284 PDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVGDDVCIPLPHWV 363 (701)
Q Consensus 284 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 363 (701)
.+.++.-++.||..|+|++.+= .|++- .++=..|.+.+++.|+.+.+| -+|+=+
T Consensus 98 ~~~~~~~~~~L~~~~Id~Li~I--------GGdgS--~~~a~~L~~~~~~~g~~i~vv----------------gIPkTI 151 (403)
T PRK06555 98 ENPLKVAAERLAADGVDILHTI--------GGDDT--NTTAADLAAYLAENGYDLTVV----------------GLPKTI 151 (403)
T ss_pred hHHHHHHHHHHHHcCCCEEEEE--------CChhH--HHHHHHHHHHHHHhCCCceEE----------------Eeeeee
Confidence 4567888999999999998651 34443 345567888888887766554 255543
Q ss_pred HhhhhcCCCeeeecCCCCcCCcceeeccCcccccCCCchHHHHHHHHHHHHHHHhhhh
Q 037037 364 AEIGRINPHIFFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRVEFDEFF 421 (701)
Q Consensus 364 ~e~g~~npDIfftDr~G~rn~EyLSlgvD~~pVl~GRTpiq~Y~DFM~SFr~~F~~~l 421 (701)
|.||..||. |+|.| |+++...+++...++.-...-
T Consensus 152 ------DNDl~~td~---------t~Gf~--------TA~~~~~~ai~~l~~ta~s~~ 186 (403)
T PRK06555 152 ------DNDVVPIRQ---------SLGAW--------TAAEQGARFFDNVINEHSANP 186 (403)
T ss_pred ------eCCCCCccC---------CcCHH--------HHHHHHHHHHHHHHHHHHhcC
Confidence 668988774 67777 889999999999999877754
No 194
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.64 E-value=2.6e+02 Score=27.37 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=62.9
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeecc-CCCCCCCccccCc
Q 037037 282 IDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHEC-GGNVGDDVCIPLP 360 (701)
Q Consensus 282 ~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqC-GGNVGD~~~IPLP 360 (701)
.+.+.....|+.+.+.|+|||-+-.+ .+ +....+++.+++.|+++.. ++.- -.+....+.+...
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~-------~~-----~~~~~~l~~~~~~gIpvv~---~d~~~~~~~~~~~~v~~d 103 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPV-------DP-----DSLAPFLEKAKAAGIPVVT---VDSDEAPDSPRAAYVGTD 103 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESS-------ST-----TTTHHHHHHHHHTTSEEEE---ESSTHHTTSTSSEEEEE-
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCC-------CH-----HHHHHHHHHHhhcCceEEE---Eeccccccccceeeeecc
Confidence 56688889999999999999976533 11 3455888999999995554 5432 1111122222211
Q ss_pred hHHHhhhhcCCCeeeecCCCCcCCccee-ecc--CcccccCCCchHHHHHHHHHHHHHHHhhh
Q 037037 361 HWVAEIGRINPHIFFTDREGRRNPECLS-WGI--DKERVLRGRTALEVYFDYMRSFRVEFDEF 420 (701)
Q Consensus 361 ~WV~e~g~~npDIfftDr~G~rn~EyLS-lgv--D~~pVl~GRTpiq~Y~DFM~SFr~~F~~~ 420 (701)
..- .|..--++|. ..- .++-++.|........+.++.|++.|+++
T Consensus 104 ~~~---------------~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~ 151 (257)
T PF13407_consen 104 NYE---------------AGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEY 151 (257)
T ss_dssp HHH---------------HHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHC
T ss_pred HHH---------------HHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhc
Confidence 110 0111112221 011 23334566666777778899999999983
No 195
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.61 E-value=2.1e+02 Score=28.95 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
..++.||.+||+||.++- +.+......-.++++.+++.||.+. ++.|
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~I--~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLESV--VCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeEE--EEcC
Confidence 458899999999998863 2223334445678888888887755 4444
No 196
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.57 E-value=2.2e+02 Score=26.73 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred cccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEE
Q 037037 263 YVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVM 342 (701)
Q Consensus 263 ~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVM 342 (701)
.+||.|. |+........+......+.++.+|+|+|++..=++.--. +..+.-...|+++.+.+ +.++.+.+-.
T Consensus 48 ~~~v~~~-----v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~-~~~~~~~~~~~~i~~~~-~~~~pv~iy~ 120 (201)
T cd00945 48 DVPVIVV-----VGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKE-GDWEEVLEEIAAVVEAA-DGGLPLKVIL 120 (201)
T ss_pred CCeEEEE-----ecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhC-CCHHHHHHHHHHHHHHh-cCCceEEEEE
No 197
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=21.32 E-value=1.5e+02 Score=32.38 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCceEEEe-eeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeeeccCCCCC
Q 037037 285 DGLLKQLRVLKSINVDGVMVD-CWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFHECGGNVG 352 (701)
Q Consensus 285 ~al~~~L~aLK~~GVdGVmvD-VWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFHqCGGNVG 352 (701)
++++..+++|..+|++-|-+| ..|... +.. .=..|.++++.+-+ |++..+ ..|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~----~~~-~~~~~v~~~n~~~~-g~~~~v--~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVF----FDE-VNDWGVAALERAIE-GLKCET--AVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhh----hHH-HHHHHHHHHHHHHc-CCCCce--EEEEeCCCCC
Confidence 467889999999999999998 233310 000 02334445555443 677554 4599988864
No 198
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.30 E-value=2.5e+02 Score=30.44 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=61.5
Q ss_pred CcccEEEeeccceeecCCcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEE
Q 037037 262 PYVPVYVMLPLGVINLKCELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 262 ~~vpVyVMLPLdvV~~~~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvV 341 (701)
..+|+-+|.=...| -...+++=++.+|++|||||.|. +--++=+ .++.+.+++.||++..+
T Consensus 93 ~~~Pivlm~Y~Npi-------~~~Gie~F~~~~~~~GvdGlivp----------DLP~ee~--~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 93 VKVPIVLMTYYNPI-------FNYGIEKFLRRAKEAGVDGLLVP----------DLPPEES--DELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCCCEEEEEeccHH-------HHhhHHHHHHHHHHcCCCEEEeC----------CCChHHH--HHHHHHHHHcCCcEEEE
Confidence 56788888766544 34678888999999999999873 2222222 36888888999999988
Q ss_pred EeeeccCCCCCCCccccCc-hHHHhhhhcC-CCeeeecCCCCc
Q 037037 342 MSFHECGGNVGDDVCIPLP-HWVAEIGRIN-PHIFFTDREGRR 382 (701)
Q Consensus 342 MSFHqCGGNVGD~~~IPLP-~WV~e~g~~n-pDIfftDr~G~r 382 (701)
.+=- =| .++-.+.+.- .-|+|-.+.|..
T Consensus 154 vaPt-------------t~~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 154 VAPT-------------TPDERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred eCCC-------------CCHHHHHHHHHhCCCcEEEEeccccc
Confidence 7633 34 4555554333 469999997654
No 199
>PRK02227 hypothetical protein; Provisional
Probab=21.29 E-value=1.2e+02 Score=32.33 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCC---cccchhHHHHHHHHHhcCccE
Q 037037 289 KQLRVLKSINVDGVMVDCWWGIVEAHTPQ---DYNWNGYKKLFQMVSELKLKL 338 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~---qYdWSgY~~Lf~mvr~~GLKl 338 (701)
.-+..++++|++|+|+|-+ .+.+-. -+++..-.++.+++|+.||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567789999999999975 444433 355666777788899999975
No 200
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=21.24 E-value=95 Score=30.04 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCceEEEeeeee
Q 037037 289 KQLRVLKSINVDGVMVDCWWG 309 (701)
Q Consensus 289 ~~L~aLK~~GVdGVmvDVWWG 309 (701)
..+++..++|+++|++||+.-
T Consensus 14 ~af~~A~~~G~~~iE~Dv~lT 34 (256)
T PF03009_consen 14 AAFRAAIELGADGIELDVQLT 34 (256)
T ss_dssp HHHHHHHHTTSSEEEEEEEE-
T ss_pred HHHHHHHHhCCCeEccccccc
Confidence 344555688999999999974
No 201
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.86 E-value=2.2e+02 Score=27.03 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=38.5
Q ss_pred CchHHHHHHHHHcCCEEEEeecccccccccccCccCCCChhHHHHHHHHHHHhcCCcc
Q 037037 574 DGYAAIVATLKKNGAVLNFASAELHTLERQEEFSEALADPDGLMWQVMNAAWDVCTPV 631 (701)
Q Consensus 574 DGY~pIa~mf~rh~v~l~FTClEM~d~eq~~~~~~a~s~PE~Lv~QV~~aA~~~GV~v 631 (701)
-|+..+.+.+++..+.|.|-+-+ ++|..+...+...|++++|++
T Consensus 33 ~G~~~v~kaikkgkakLVilA~D--------------~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 33 KGTNETTKAVERGIAKLVVIAED--------------VDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred EcHHHHHHHHHcCCccEEEEeCC--------------CChHHHHHHHHHHHHHcCCCE
Confidence 47999999999999999998743 567788899999999999995
No 202
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=20.78 E-value=82 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhh
Q 037037 398 RGRTALEVYFDYMRSFRVEFDEFF 421 (701)
Q Consensus 398 ~GRTpiq~Y~DFM~SFr~~F~~~l 421 (701)
++++....+++|.++||++|..-.
T Consensus 37 ~~~~~~~~~~~f~~~fk~nf~~~~ 60 (77)
T PF04854_consen 37 RDEEDSYLFRDFWRAFKQNFKQSL 60 (77)
T ss_pred cCCccChHHHHHHHHHHHHHHHHH
Confidence 445567899999999999998754
No 203
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=20.73 E-value=2.2e+02 Score=30.24 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=44.2
Q ss_pred CcccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCccc---ch---hHHHHHHHHHhcCcc-----EEEEEeeecc
Q 037037 279 CELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYN---WN---GYKKLFQMVSELKLK-----LQVVMSFHEC 347 (701)
Q Consensus 279 ~~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYd---WS---gY~~Lf~mvr~~GLK-----lqvVMSFHqC 347 (701)
++|.-....+...++| ..|+-.|++|||=| +...|-.|- .. ..+++.+.|++.+.+ |...|--|.|
T Consensus 24 ~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hcs 100 (227)
T cd08594 24 DQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHCS 100 (227)
T ss_pred CcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccCC
Confidence 4566556666677777 78999999999987 222344432 11 268899999998766 4555555643
No 204
>PTZ00445 p36-lilke protein; Provisional
Probab=20.57 E-value=2.1e+02 Score=30.40 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=48.7
Q ss_pred cccCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccch------------hHHHHHHHHHhcCccEEEE
Q 037037 280 ELIDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWN------------GYKKLFQMVSELKLKLQVV 341 (701)
Q Consensus 280 ~l~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWS------------gY~~Lf~mvr~~GLKlqvV 341 (701)
.++..+....--+.||..|+-.|.+|.==-+|..++.|..++. ..++++..++++|++|.||
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 3455566666677799999999999987777777666666664 4788899999999998776
No 205
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=20.42 E-value=1.8e+02 Score=33.79 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCCcccchhHHHHHHHHHhcCccEEEEEeee
Q 037037 283 DPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHTPQDYNWNGYKKLFQMVSELKLKLQVVMSFH 345 (701)
Q Consensus 283 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~qYdWSgY~~Lf~mvr~~GLKlqvVMSFH 345 (701)
+.+.+....+.++++|..+||+|+++ +-|++-+.|.+.+++.+|-|+.=-++|
T Consensus 246 ~~~em~~ra~~a~e~G~~~~mv~~~~----------~G~~al~~l~~~~~~~~l~IhaHrA~~ 298 (475)
T CHL00040 246 TCEEMYKRAVFARELGVPIVMHDYLT----------GGFTANTSLAHYCRDNGLLLHIHRAMH 298 (475)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeccc----------cccchHHHHHHHhhhcCceEEeccccc
Confidence 57999999999999999999999876 246667777777778888777766666
No 206
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=20.28 E-value=59 Score=35.28 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=45.5
Q ss_pred ceeecCCCCCCCCCcccCC-CCccccccccccccccccCCCcccccchhhhc-CCCCCCCCCCCCCCcccEEEeecccee
Q 037037 198 KGVFMPTPSPYDLSPIAQS-QPSLVEDGREQTEIQSHIGGPVDAVSDKQIAD-VPPKLPERDFSGTPYVPVYVMLPLGVI 275 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vpVyVMLPLdvV 275 (701)
|.|++|+-.++.+.-...+ .|+|+++..|.-. |- +....++ +.-...+.+++....|+|+ |
T Consensus 1 s~LfvPa~~~~~i~ka~~~~aD~vi~DLEDaVa---~~-------~K~~Ar~~l~~~l~~~~~~~~~~VRIN---~---- 63 (283)
T COG2301 1 SMLFVPATNADAIAKAAISGADSVILDLEDAVA---PA-------DKDAARDNLRRALLDLPFTGEVVVRIN---G---- 63 (283)
T ss_pred CccccCCCCHHHHHhhhhcCCCEEEEeccccCC---cc-------chHHHHHHHHHHhcccCccCceEEEec---C----
Confidence 3456666555555444333 7777777766321 10 0011111 2223445555543333322 2
Q ss_pred ecCCcccCHHHHHHHHHHHHHcCCceEEEe
Q 037037 276 NLKCELIDPDGLLKQLRVLKSINVDGVMVD 305 (701)
Q Consensus 276 ~~~~~l~~~~al~~~L~aLK~~GVdGVmvD 305 (701)
+ +...-...|.++...||+|||++
T Consensus 64 -----l-~t~~g~~Dl~av~~~~~d~v~LP 87 (283)
T COG2301 64 -----L-DTPWGADDLAAVVRSAVDGVVLP 87 (283)
T ss_pred -----C-CChhhHHHHHHHHhcCCCEEEcc
Confidence 2 22456788999999999999997
Done!