Query 037039
Match_columns 505
No_of_seqs 376 out of 2685
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-66 3.4E-71 556.8 37.6 471 10-505 7-530 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-41 4.9E-46 328.1 12.4 252 168-430 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.3E-35 2.7E-40 334.9 24.5 324 117-486 133-506 (1153)
4 PRK04841 transcriptional regul 99.4 1.5E-11 3.2E-16 138.4 23.4 280 159-482 10-332 (903)
5 PRK00411 cdc6 cell division co 99.3 1E-09 2.2E-14 111.4 25.5 308 157-477 24-380 (394)
6 COG2909 MalT ATP-dependent tra 99.3 3.1E-10 6.7E-15 117.9 20.3 291 159-484 15-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.2 2.8E-09 6.2E-14 106.9 24.7 292 158-457 10-351 (365)
8 PF05729 NACHT: NACHT domain 99.2 3.3E-10 7.1E-15 100.0 11.7 148 191-347 1-162 (166)
9 COG2256 MGS1 ATPase related to 99.0 3.7E-09 8E-14 101.3 11.1 129 187-347 45-175 (436)
10 TIGR00635 ruvB Holliday juncti 98.9 2.5E-08 5.4E-13 97.5 16.3 261 163-458 4-291 (305)
11 PRK00080 ruvB Holliday junctio 98.9 1.6E-08 3.6E-13 99.5 14.4 262 163-458 25-312 (328)
12 PF01637 Arch_ATPase: Archaeal 98.9 3.8E-09 8.2E-14 98.8 6.7 173 165-347 1-203 (234)
13 TIGR03015 pepcterm_ATPase puta 98.9 1.3E-07 2.9E-12 90.6 17.3 147 190-347 43-204 (269)
14 PRK06893 DNA replication initi 98.8 4.7E-08 1E-12 90.9 11.4 122 190-347 39-173 (229)
15 PRK13342 recombination factor 98.8 6.3E-08 1.4E-12 98.3 12.4 145 163-347 12-163 (413)
16 PF13173 AAA_14: AAA domain 98.7 5.8E-08 1.3E-12 81.6 8.7 122 191-340 3-127 (128)
17 PF13401 AAA_22: AAA domain; P 98.7 3.8E-08 8.3E-13 83.1 7.6 117 190-314 4-125 (131)
18 KOG2028 ATPase related to the 98.7 9.9E-08 2.1E-12 90.1 10.8 132 188-347 160-293 (554)
19 PF13191 AAA_16: AAA ATPase do 98.7 3.3E-08 7.1E-13 88.9 7.6 47 164-213 1-47 (185)
20 cd00009 AAA The AAA+ (ATPases 98.7 2.3E-07 4.9E-12 79.7 11.8 125 166-316 1-131 (151)
21 PTZ00112 origin recognition co 98.6 5.8E-07 1.3E-11 94.9 14.5 291 159-457 751-1087(1164)
22 TIGR02903 spore_lon_C ATP-depe 98.6 2.7E-07 5.8E-12 97.8 12.1 177 163-347 154-365 (615)
23 PRK12323 DNA polymerase III su 98.6 4.9E-06 1.1E-10 86.3 19.0 174 163-346 16-194 (700)
24 PTZ00202 tuzin; Provisional 98.6 3E-06 6.6E-11 83.2 16.6 171 157-347 256-433 (550)
25 PRK07003 DNA polymerase III su 98.5 1.1E-06 2.5E-11 92.1 13.8 167 163-347 16-190 (830)
26 PRK13341 recombination factor 98.5 1E-06 2.3E-11 94.3 13.6 144 163-347 28-180 (725)
27 COG3899 Predicted ATPase [Gene 98.5 4.2E-06 9.1E-11 91.9 17.1 299 164-480 1-384 (849)
28 PRK14949 DNA polymerase III su 98.5 3.4E-06 7.3E-11 90.4 15.3 155 163-347 16-190 (944)
29 COG1474 CDC6 Cdc6-related prot 98.5 1.6E-06 3.6E-11 85.6 12.1 180 158-347 12-202 (366)
30 PRK14961 DNA polymerase III su 98.5 3.6E-06 7.9E-11 83.9 14.6 168 163-346 16-189 (363)
31 PRK05564 DNA polymerase III su 98.5 3.2E-06 7E-11 82.7 13.9 154 163-346 4-163 (313)
32 PRK12402 replication factor C 98.4 1.9E-06 4.2E-11 85.4 12.5 170 163-347 15-196 (337)
33 PRK14957 DNA polymerase III su 98.4 4.3E-06 9.2E-11 86.6 14.9 153 163-346 16-189 (546)
34 cd01128 rho_factor Transcripti 98.4 4.6E-07 1E-11 84.6 6.7 90 190-285 16-113 (249)
35 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.4E-06 3.1E-11 81.0 9.9 137 168-346 22-170 (226)
36 PRK14960 DNA polymerase III su 98.4 5.5E-06 1.2E-10 86.1 14.8 170 163-347 15-189 (702)
37 PLN03025 replication factor C 98.4 4.3E-06 9.3E-11 82.0 13.2 155 163-346 13-169 (319)
38 PRK06645 DNA polymerase III su 98.4 7.7E-06 1.7E-10 84.1 14.8 173 163-347 21-199 (507)
39 PRK14963 DNA polymerase III su 98.4 5.3E-06 1.2E-10 85.6 13.5 168 163-347 14-187 (504)
40 PRK08727 hypothetical protein; 98.3 7.4E-06 1.6E-10 76.4 12.6 121 191-347 42-174 (233)
41 PRK09376 rho transcription ter 98.3 3.1E-07 6.7E-12 89.5 3.1 51 191-242 170-222 (416)
42 PF05496 RuvB_N: Holliday junc 98.3 7E-06 1.5E-10 74.0 10.9 149 162-346 23-190 (233)
43 PRK14962 DNA polymerase III su 98.3 1.2E-05 2.5E-10 82.4 14.1 154 163-347 14-188 (472)
44 PRK07994 DNA polymerase III su 98.3 1.4E-05 3E-10 84.2 14.9 167 163-347 16-190 (647)
45 PRK04195 replication factor C 98.3 6.7E-06 1.5E-10 85.3 12.4 153 163-347 14-172 (482)
46 TIGR01242 26Sp45 26S proteasom 98.3 5.8E-06 1.3E-10 82.7 11.3 159 163-347 122-305 (364)
47 PRK14956 DNA polymerase III su 98.3 1.3E-05 2.7E-10 81.1 13.4 171 163-347 18-192 (484)
48 PRK08691 DNA polymerase III su 98.3 1.9E-05 4.2E-10 82.9 14.8 154 163-347 16-190 (709)
49 PRK14951 DNA polymerase III su 98.3 1.6E-05 3.4E-10 83.5 14.1 170 163-347 16-195 (618)
50 PHA02544 44 clamp loader, smal 98.2 1.9E-05 4E-10 77.6 13.8 149 163-346 21-171 (316)
51 PRK00440 rfc replication facto 98.2 3.2E-05 7E-10 76.0 15.5 154 163-347 17-173 (319)
52 PRK07940 DNA polymerase III su 98.2 2.3E-05 5E-10 78.4 14.0 158 163-346 5-187 (394)
53 PRK14958 DNA polymerase III su 98.2 2.3E-05 4.9E-10 81.2 14.3 153 163-345 16-188 (509)
54 PRK14969 DNA polymerase III su 98.2 2.6E-05 5.6E-10 81.3 14.4 154 163-346 16-189 (527)
55 PRK14955 DNA polymerase III su 98.2 1.8E-05 4E-10 79.9 12.8 173 163-346 16-197 (397)
56 PRK14964 DNA polymerase III su 98.2 3E-05 6.5E-10 79.2 14.2 155 163-347 13-187 (491)
57 PRK08084 DNA replication initi 98.2 2.9E-05 6.4E-10 72.5 13.1 121 190-346 45-178 (235)
58 PRK07764 DNA polymerase III su 98.2 2.3E-05 5.1E-10 85.2 14.0 170 163-346 15-190 (824)
59 PRK05896 DNA polymerase III su 98.2 3E-05 6.5E-10 80.5 13.6 166 163-346 16-189 (605)
60 PRK14952 DNA polymerase III su 98.1 5.8E-05 1.3E-09 79.0 15.5 168 163-346 13-188 (584)
61 TIGR02397 dnaX_nterm DNA polym 98.1 6E-05 1.3E-09 75.3 15.2 153 163-347 14-188 (355)
62 TIGR00678 holB DNA polymerase 98.1 5E-05 1.1E-09 68.4 13.2 72 274-347 95-167 (188)
63 PRK11331 5-methylcytosine-spec 98.1 9E-06 2E-10 81.2 8.9 119 163-300 175-298 (459)
64 PRK09112 DNA polymerase III su 98.1 4.1E-05 8.8E-10 75.5 13.0 177 159-346 19-211 (351)
65 PRK09087 hypothetical protein; 98.1 2.2E-05 4.7E-10 72.7 10.3 111 190-347 44-165 (226)
66 KOG2543 Origin recognition com 98.1 7E-05 1.5E-09 71.9 13.3 116 162-285 5-125 (438)
67 PRK05642 DNA replication initi 98.1 4.1E-05 8.8E-10 71.5 11.7 121 190-346 45-177 (234)
68 PF00308 Bac_DnaA: Bacterial d 98.1 3.5E-05 7.6E-10 71.0 11.0 153 165-347 11-178 (219)
69 TIGR00767 rho transcription te 98.1 8.8E-06 1.9E-10 79.9 7.1 90 190-285 168-265 (415)
70 PRK14970 DNA polymerase III su 98.1 6.9E-05 1.5E-09 75.2 13.8 154 163-346 17-178 (367)
71 PRK03992 proteasome-activating 98.1 2.5E-05 5.5E-10 78.6 10.5 158 163-346 131-313 (389)
72 PRK09111 DNA polymerase III su 98.0 7.6E-05 1.7E-09 78.6 14.3 172 163-347 24-203 (598)
73 PRK07471 DNA polymerase III su 98.0 6.4E-05 1.4E-09 74.6 13.0 178 162-347 18-212 (365)
74 COG3903 Predicted ATPase [Gene 98.0 1E-05 2.2E-10 78.6 6.8 264 188-483 12-315 (414)
75 PRK14954 DNA polymerase III su 98.0 0.0001 2.2E-09 77.8 14.7 173 163-346 16-197 (620)
76 PRK14959 DNA polymerase III su 98.0 0.00015 3.2E-09 75.9 14.7 166 163-346 16-189 (624)
77 TIGR02881 spore_V_K stage V sp 98.0 0.0001 2.2E-09 70.1 12.5 161 164-347 7-190 (261)
78 TIGR02639 ClpA ATP-dependent C 98.0 5.3E-05 1.2E-09 82.6 11.9 157 163-347 182-357 (731)
79 PF00004 AAA: ATPase family as 97.9 2.4E-05 5.1E-10 65.9 6.7 21 193-213 1-21 (132)
80 PRK08116 hypothetical protein; 97.9 4E-05 8.6E-10 72.9 8.9 104 191-315 115-221 (268)
81 PRK08903 DnaA regulatory inact 97.9 9.3E-05 2E-09 68.9 11.0 116 190-345 42-167 (227)
82 CHL00181 cbbX CbbX; Provisiona 97.9 0.00043 9.4E-09 66.5 15.8 135 191-347 60-208 (287)
83 TIGR03689 pup_AAA proteasome A 97.9 0.00012 2.6E-09 75.1 12.4 166 163-347 182-377 (512)
84 PRK14087 dnaA chromosomal repl 97.9 0.00021 4.5E-09 73.2 13.9 134 190-348 141-288 (450)
85 TIGR03345 VI_ClpV1 type VI sec 97.9 6.9E-05 1.5E-09 82.5 10.9 158 163-347 187-362 (852)
86 PRK06305 DNA polymerase III su 97.9 0.00029 6.2E-09 72.2 14.7 153 163-346 17-191 (451)
87 PRK07133 DNA polymerase III su 97.9 0.00023 5E-09 75.7 14.2 163 163-346 18-188 (725)
88 TIGR02880 cbbX_cfxQ probable R 97.9 0.00019 4.1E-09 69.0 12.6 134 192-347 60-207 (284)
89 PRK14953 DNA polymerase III su 97.9 0.00042 9.1E-09 71.5 15.6 154 163-347 16-190 (486)
90 PRK14950 DNA polymerase III su 97.9 0.00029 6.3E-09 74.8 14.8 169 163-346 16-190 (585)
91 KOG2227 Pre-initiation complex 97.8 0.00011 2.3E-09 72.5 10.2 180 160-347 147-337 (529)
92 PRK14965 DNA polymerase III su 97.8 0.00029 6.2E-09 74.5 14.3 166 163-346 16-189 (576)
93 PRK06620 hypothetical protein; 97.8 0.00013 2.9E-09 66.9 10.0 108 191-347 45-159 (214)
94 PF05673 DUF815: Protein of un 97.8 0.00016 3.4E-09 66.3 10.2 119 163-314 27-149 (249)
95 PRK12422 chromosomal replicati 97.8 0.00018 3.9E-09 73.4 11.3 134 190-347 141-283 (445)
96 smart00382 AAA ATPases associa 97.8 0.00019 4E-09 60.7 9.8 38 191-230 3-40 (148)
97 PRK14971 DNA polymerase III su 97.8 0.00037 8.1E-09 73.9 13.7 152 163-346 17-191 (614)
98 PRK08451 DNA polymerase III su 97.7 0.00091 2E-08 69.2 15.5 155 163-347 14-188 (535)
99 TIGR00362 DnaA chromosomal rep 97.7 0.00035 7.7E-09 71.0 12.1 134 190-347 136-280 (405)
100 CHL00095 clpC Clp protease ATP 97.7 0.00015 3.2E-09 80.1 9.8 159 163-347 179-353 (821)
101 PRK06647 DNA polymerase III su 97.7 0.00094 2E-08 70.1 15.1 166 163-346 16-189 (563)
102 TIGR00763 lon ATP-dependent pr 97.7 0.0009 1.9E-08 73.6 15.7 50 163-212 320-369 (775)
103 PRK14948 DNA polymerase III su 97.7 0.001 2.2E-08 70.7 15.3 171 163-346 16-191 (620)
104 PRK00149 dnaA chromosomal repl 97.7 0.00069 1.5E-08 69.8 13.8 131 190-347 148-292 (450)
105 PTZ00454 26S protease regulato 97.7 0.00038 8.3E-09 69.9 11.5 158 163-346 145-327 (398)
106 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00025 5.4E-09 78.7 10.9 45 163-213 173-217 (852)
107 PRK08181 transposase; Validate 97.6 0.00016 3.4E-09 68.5 7.8 101 191-315 107-209 (269)
108 PF05621 TniB: Bacterial TniB 97.6 0.00057 1.2E-08 64.7 11.5 108 170-286 44-156 (302)
109 PRK14088 dnaA chromosomal repl 97.6 0.0004 8.7E-09 71.0 11.2 135 190-347 130-275 (440)
110 PRK11034 clpA ATP-dependent Cl 97.6 0.00038 8.2E-09 75.4 11.5 160 163-347 186-361 (758)
111 PRK07952 DNA replication prote 97.6 0.00036 7.8E-09 65.1 9.9 104 190-315 99-205 (244)
112 COG2255 RuvB Holliday junction 97.6 0.00079 1.7E-08 62.4 11.8 149 163-347 26-193 (332)
113 COG1373 Predicted ATPase (AAA+ 97.6 0.001 2.2E-08 67.1 13.7 120 192-342 39-161 (398)
114 PRK12377 putative replication 97.6 0.00035 7.6E-09 65.3 9.6 102 190-314 101-205 (248)
115 COG0593 DnaA ATPase involved i 97.6 0.00065 1.4E-08 67.4 11.7 133 189-347 112-256 (408)
116 KOG0989 Replication factor C, 97.6 0.00038 8.2E-09 65.1 9.4 159 163-346 36-199 (346)
117 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00099 2.1E-08 63.3 12.4 114 192-315 23-161 (262)
118 PRK08058 DNA polymerase III su 97.6 0.0013 2.8E-08 64.7 13.5 169 164-346 6-180 (329)
119 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00038 8.3E-09 77.2 10.9 138 163-314 565-717 (852)
120 PRK10865 protein disaggregatio 97.6 0.00046 1E-08 76.3 11.3 44 163-212 178-221 (857)
121 PRK10536 hypothetical protein; 97.6 0.0022 4.9E-08 59.5 13.9 137 163-316 55-214 (262)
122 PRK14086 dnaA chromosomal repl 97.6 0.00057 1.2E-08 71.3 11.2 130 191-347 315-458 (617)
123 PRK05563 DNA polymerase III su 97.6 0.0017 3.8E-08 68.3 14.9 166 163-346 16-189 (559)
124 PRK08118 topology modulation p 97.6 3.9E-05 8.5E-10 67.5 2.2 34 192-225 3-37 (167)
125 PRK06526 transposase; Provisio 97.5 0.00019 4.2E-09 67.5 6.9 23 191-213 99-121 (254)
126 TIGR02639 ClpA ATP-dependent C 97.5 0.00037 8E-09 76.1 10.1 123 163-302 454-580 (731)
127 PRK08939 primosomal protein Dn 97.5 0.00051 1.1E-08 66.5 9.7 122 167-314 135-260 (306)
128 PRK10787 DNA-binding ATP-depen 97.5 0.0021 4.7E-08 70.1 15.5 166 162-347 321-505 (784)
129 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00026 5.7E-09 78.0 8.5 138 163-314 566-718 (852)
130 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00019 4.1E-09 69.9 6.6 57 158-214 46-102 (361)
131 PRK09183 transposase/IS protei 97.5 0.00035 7.5E-09 66.1 8.2 22 191-212 103-124 (259)
132 PTZ00361 26 proteosome regulat 97.5 0.00038 8.2E-09 70.5 8.9 158 163-346 183-365 (438)
133 CHL00095 clpC Clp protease ATP 97.5 0.00039 8.5E-09 76.9 9.7 139 163-315 509-662 (821)
134 PRK07399 DNA polymerase III su 97.5 0.0023 5E-08 62.3 13.6 173 163-347 4-194 (314)
135 PF13177 DNA_pol3_delta2: DNA 97.5 0.001 2.2E-08 58.2 10.0 138 167-336 1-162 (162)
136 PRK05707 DNA polymerase III su 97.5 0.0016 3.4E-08 63.8 12.3 71 274-346 105-176 (328)
137 PF01695 IstB_IS21: IstB-like 97.4 0.00024 5.1E-09 63.2 5.8 101 191-315 48-150 (178)
138 PRK10865 protein disaggregatio 97.4 0.0006 1.3E-08 75.4 10.2 138 163-314 568-720 (857)
139 PF07693 KAP_NTPase: KAP famil 97.4 0.0043 9.3E-08 61.1 15.3 42 169-213 2-43 (325)
140 PRK06921 hypothetical protein; 97.4 0.00086 1.9E-08 63.7 9.4 37 190-228 117-154 (266)
141 CHL00176 ftsH cell division pr 97.4 0.0014 3.1E-08 69.7 11.9 159 163-347 183-365 (638)
142 PRK13531 regulatory ATPase Rav 97.4 0.00065 1.4E-08 68.7 8.8 152 163-346 20-192 (498)
143 TIGR00602 rad24 checkpoint pro 97.4 0.0012 2.6E-08 69.7 11.0 50 163-213 84-133 (637)
144 COG0542 clpA ATP-binding subun 97.4 0.00057 1.2E-08 72.8 8.5 249 163-455 491-762 (786)
145 COG0470 HolB ATPase involved i 97.4 0.002 4.3E-08 63.4 11.8 144 164-335 2-168 (325)
146 TIGR01241 FtsH_fam ATP-depende 97.3 0.0018 3.9E-08 67.6 11.8 159 163-347 55-237 (495)
147 PF04665 Pox_A32: Poxvirus A32 97.3 0.0011 2.3E-08 61.3 8.8 36 191-228 14-49 (241)
148 PRK06835 DNA replication prote 97.3 0.00074 1.6E-08 66.0 8.1 103 191-315 184-289 (329)
149 COG2607 Predicted ATPase (AAA+ 97.3 0.002 4.3E-08 58.3 9.8 120 163-315 60-183 (287)
150 PRK11034 clpA ATP-dependent Cl 97.3 0.00086 1.9E-08 72.7 8.9 123 163-302 458-584 (758)
151 PF00910 RNA_helicase: RNA hel 97.2 0.00083 1.8E-08 54.3 6.3 20 193-212 1-20 (107)
152 PF07728 AAA_5: AAA domain (dy 97.2 0.00017 3.7E-09 61.4 1.7 90 193-301 2-91 (139)
153 PRK07261 topology modulation p 97.1 0.00079 1.7E-08 59.5 5.5 34 192-225 2-36 (171)
154 PF13207 AAA_17: AAA domain; P 97.1 0.00034 7.5E-09 57.9 3.0 21 192-212 1-21 (121)
155 PF02562 PhoH: PhoH-like prote 97.1 0.001 2.2E-08 60.0 5.9 133 167-316 4-157 (205)
156 PF14532 Sigma54_activ_2: Sigm 97.1 0.00063 1.4E-08 57.8 4.2 108 166-315 1-110 (138)
157 TIGR02237 recomb_radB DNA repa 97.1 0.0027 5.9E-08 58.1 8.7 94 188-285 10-107 (209)
158 COG1484 DnaC DNA replication p 97.0 0.0017 3.7E-08 61.1 7.0 82 189-293 104-185 (254)
159 cd01120 RecA-like_NTPases RecA 97.0 0.0023 5E-08 55.7 7.5 39 192-232 1-39 (165)
160 cd03214 ABC_Iron-Siderophores_ 97.0 0.0056 1.2E-07 54.6 10.0 126 191-320 26-163 (180)
161 TIGR02902 spore_lonB ATP-depen 97.0 0.0018 4E-08 67.8 7.7 44 163-212 65-108 (531)
162 TIGR01243 CDC48 AAA family ATP 97.0 0.0036 7.8E-08 68.6 10.1 50 163-212 178-234 (733)
163 PRK06696 uridine kinase; Valid 97.0 0.00092 2E-08 61.9 4.5 42 168-212 3-44 (223)
164 TIGR01243 CDC48 AAA family ATP 96.9 0.0081 1.8E-07 65.9 12.4 158 163-346 453-633 (733)
165 KOG1514 Origin recognition com 96.9 0.0069 1.5E-07 63.0 10.8 141 161-312 394-546 (767)
166 PRK06871 DNA polymerase III su 96.9 0.016 3.4E-07 56.5 12.9 71 274-346 106-177 (325)
167 cd01131 PilT Pilus retraction 96.9 0.0018 3.8E-08 58.8 6.0 113 191-320 2-114 (198)
168 KOG2228 Origin recognition com 96.9 0.018 4E-07 54.8 12.6 178 163-347 24-218 (408)
169 COG4608 AppF ABC-type oligopep 96.9 0.0055 1.2E-07 57.0 9.0 131 190-323 39-178 (268)
170 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.012 2.6E-07 50.8 10.6 123 191-316 3-139 (159)
171 COG2812 DnaX DNA polymerase II 96.9 0.0017 3.8E-08 66.4 6.2 168 163-347 16-190 (515)
172 KOG0991 Replication factor C, 96.9 0.0019 4.1E-08 58.1 5.6 110 163-300 27-138 (333)
173 cd01394 radB RadB. The archaea 96.9 0.0047 1E-07 57.0 8.5 44 188-233 17-60 (218)
174 PRK15455 PrkA family serine pr 96.9 0.00066 1.4E-08 69.7 3.0 50 163-212 76-125 (644)
175 PRK06090 DNA polymerase III su 96.9 0.038 8.2E-07 53.7 14.8 71 274-346 107-178 (319)
176 cd03238 ABC_UvrA The excision 96.8 0.0067 1.4E-07 53.7 8.9 119 191-319 22-153 (176)
177 PRK09361 radB DNA repair and r 96.8 0.0062 1.3E-07 56.5 8.9 92 188-284 21-116 (225)
178 KOG0741 AAA+-type ATPase [Post 96.8 0.011 2.4E-07 59.4 10.8 135 187-346 535-684 (744)
179 PF13604 AAA_30: AAA domain; P 96.8 0.0059 1.3E-07 55.2 8.4 102 191-313 19-129 (196)
180 KOG2004 Mitochondrial ATP-depe 96.8 0.0063 1.4E-07 63.4 9.3 52 161-212 409-460 (906)
181 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0036 7.7E-08 59.0 7.1 41 191-233 70-111 (274)
182 PRK08699 DNA polymerase III su 96.8 0.016 3.5E-07 56.7 11.9 71 274-346 112-183 (325)
183 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.017 3.7E-07 49.4 10.7 104 191-320 27-132 (144)
184 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0053 1.1E-07 62.7 8.4 97 163-285 190-292 (802)
185 COG0466 Lon ATP-dependent Lon 96.8 0.00098 2.1E-08 69.3 3.2 166 161-347 321-507 (782)
186 CHL00195 ycf46 Ycf46; Provisio 96.7 0.011 2.4E-07 60.9 10.8 159 163-347 228-404 (489)
187 COG1222 RPT1 ATP-dependent 26S 96.7 0.042 9.1E-07 52.9 13.6 155 163-345 151-332 (406)
188 cd03222 ABC_RNaseL_inhibitor T 96.7 0.015 3.3E-07 51.5 10.0 102 191-320 26-137 (177)
189 cd03247 ABCC_cytochrome_bd The 96.7 0.017 3.6E-07 51.4 10.4 122 191-319 29-161 (178)
190 COG1126 GlnQ ABC-type polar am 96.7 0.027 5.9E-07 50.5 11.3 59 265-323 144-204 (240)
191 PRK06964 DNA polymerase III su 96.7 0.015 3.3E-07 57.0 10.8 71 274-346 131-202 (342)
192 PRK11889 flhF flagellar biosyn 96.7 0.018 3.9E-07 56.9 11.0 24 189-212 240-263 (436)
193 cd01393 recA_like RecA is a b 96.6 0.011 2.3E-07 54.9 9.2 95 188-285 17-124 (226)
194 KOG1051 Chaperone HSP104 and r 96.6 0.011 2.4E-07 64.2 10.3 123 163-302 562-687 (898)
195 PRK08769 DNA polymerase III su 96.6 0.038 8.3E-07 53.7 13.0 71 274-346 112-183 (319)
196 PRK04296 thymidine kinase; Pro 96.6 0.0036 7.9E-08 56.3 5.6 115 191-316 3-117 (190)
197 KOG0924 mRNA splicing factor A 96.6 0.014 3E-07 60.4 10.1 151 170-334 359-529 (1042)
198 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.02 4.4E-07 51.1 10.5 21 192-212 1-21 (183)
199 cd03216 ABC_Carb_Monos_I This 96.6 0.011 2.4E-07 51.8 8.4 116 191-320 27-147 (163)
200 PRK12608 transcription termina 96.6 0.004 8.8E-08 61.1 6.1 102 171-284 119-229 (380)
201 PF14516 AAA_35: AAA-like doma 96.6 0.12 2.5E-06 51.0 16.5 179 160-347 8-213 (331)
202 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.016 3.5E-07 54.0 10.1 97 188-285 17-125 (235)
203 PRK11608 pspF phage shock prot 96.6 0.0066 1.4E-07 59.7 7.6 46 163-212 6-51 (326)
204 PRK12724 flagellar biosynthesi 96.6 0.017 3.6E-07 57.8 10.3 24 189-212 222-245 (432)
205 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.021 4.5E-07 53.1 10.2 55 266-320 148-204 (254)
206 KOG1969 DNA replication checkp 96.6 0.01 2.2E-07 62.1 8.8 87 188-300 324-412 (877)
207 cd03228 ABCC_MRP_Like The MRP 96.5 0.013 2.8E-07 51.7 8.6 122 191-320 29-160 (171)
208 cd03223 ABCD_peroxisomal_ALDP 96.5 0.033 7.2E-07 48.9 11.0 116 191-319 28-152 (166)
209 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.038 8.3E-07 50.6 11.6 23 190-212 29-51 (213)
210 PF07724 AAA_2: AAA domain (Cd 96.5 0.0035 7.6E-08 55.2 4.5 91 190-301 3-105 (171)
211 PRK07993 DNA polymerase III su 96.5 0.075 1.6E-06 52.2 14.2 71 274-346 107-178 (334)
212 PRK07667 uridine kinase; Provi 96.5 0.0035 7.5E-08 56.6 4.5 37 172-212 3-39 (193)
213 COG1875 NYN ribonuclease and A 96.5 0.025 5.3E-07 54.6 10.2 142 165-316 226-389 (436)
214 PRK15429 formate hydrogenlyase 96.5 0.014 3.1E-07 63.6 10.0 135 163-315 376-521 (686)
215 cd00983 recA RecA is a bacter 96.5 0.0064 1.4E-07 59.0 6.4 90 188-285 53-143 (325)
216 PLN00020 ribulose bisphosphate 96.4 0.0059 1.3E-07 59.5 6.0 26 188-213 146-171 (413)
217 KOG0735 AAA+-type ATPase [Post 96.4 0.0072 1.6E-07 62.8 6.8 75 189-285 430-504 (952)
218 PHA02244 ATPase-like protein 96.4 0.018 3.8E-07 56.5 9.1 99 192-314 121-230 (383)
219 COG4618 ArpD ABC-type protease 96.4 0.014 2.9E-07 58.8 8.2 54 267-320 482-537 (580)
220 PRK05541 adenylylsulfate kinas 96.4 0.0034 7.4E-08 55.8 3.8 37 188-226 5-41 (176)
221 cd03235 ABC_Metallic_Cations A 96.4 0.044 9.5E-07 50.3 11.4 53 268-320 143-197 (213)
222 KOG0734 AAA+-type ATPase conta 96.4 0.043 9.4E-07 55.4 11.6 51 163-213 304-360 (752)
223 COG1618 Predicted nucleotide k 96.3 0.003 6.6E-08 53.6 3.1 24 190-213 5-28 (179)
224 PF13238 AAA_18: AAA domain; P 96.3 0.0026 5.7E-08 53.0 2.7 21 193-213 1-21 (129)
225 cd03246 ABCC_Protease_Secretio 96.3 0.028 6.1E-07 49.7 9.4 121 191-319 29-160 (173)
226 cd01124 KaiC KaiC is a circadi 96.3 0.021 4.5E-07 51.2 8.7 36 193-230 2-37 (187)
227 cd03230 ABC_DR_subfamily_A Thi 96.3 0.042 9.2E-07 48.6 10.5 123 191-320 27-160 (173)
228 PF08423 Rad51: Rad51; InterP 96.3 0.019 4.2E-07 54.2 8.7 56 188-244 36-95 (256)
229 TIGR02974 phageshock_pspF psp 96.3 0.017 3.6E-07 56.8 8.5 45 165-213 1-45 (329)
230 PTZ00301 uridine kinase; Provi 96.3 0.0044 9.4E-08 56.5 4.1 23 190-212 3-25 (210)
231 TIGR02012 tigrfam_recA protein 96.3 0.0092 2E-07 57.8 6.4 90 188-285 53-143 (321)
232 KOG0730 AAA+-type ATPase [Post 96.3 0.058 1.3E-06 56.0 12.3 164 158-347 428-614 (693)
233 TIGR02324 CP_lyasePhnL phospho 96.3 0.074 1.6E-06 49.2 12.3 54 268-321 160-215 (224)
234 PRK05480 uridine/cytidine kina 96.3 0.0033 7.1E-08 57.6 3.2 26 188-213 4-29 (209)
235 PF00485 PRK: Phosphoribulokin 96.3 0.0034 7.5E-08 56.7 3.2 21 192-212 1-21 (194)
236 PF13671 AAA_33: AAA domain; P 96.3 0.0036 7.9E-08 53.3 3.2 21 192-212 1-21 (143)
237 PF00448 SRP54: SRP54-type pro 96.2 0.011 2.5E-07 53.3 6.5 54 190-245 1-55 (196)
238 TIGR02858 spore_III_AA stage I 96.2 0.091 2E-06 49.9 12.8 134 171-320 97-234 (270)
239 COG2884 FtsE Predicted ATPase 96.2 0.1 2.2E-06 45.9 11.8 57 266-322 146-204 (223)
240 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.053 1.1E-06 51.0 11.1 55 267-321 125-182 (246)
241 COG0714 MoxR-like ATPases [Gen 96.2 0.021 4.6E-07 56.2 8.8 115 163-301 24-138 (329)
242 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0062 1.3E-07 59.0 4.7 51 162-212 60-110 (358)
243 TIGR00235 udk uridine kinase. 96.2 0.004 8.6E-08 57.0 3.3 25 188-212 4-28 (207)
244 KOG0744 AAA+-type ATPase [Post 96.2 0.0094 2E-07 56.4 5.6 139 190-347 177-339 (423)
245 PRK08233 hypothetical protein; 96.2 0.004 8.6E-08 55.6 3.2 24 190-213 3-26 (182)
246 COG0464 SpoVK ATPases of the A 96.2 0.034 7.3E-07 58.2 10.5 159 163-347 242-422 (494)
247 cd03229 ABC_Class3 This class 96.2 0.024 5.2E-07 50.4 8.1 126 191-320 27-166 (178)
248 TIGR01817 nifA Nif-specific re 96.2 0.016 3.5E-07 61.2 8.1 47 163-213 196-242 (534)
249 PRK05022 anaerobic nitric oxid 96.1 0.021 4.5E-07 59.9 8.7 136 162-315 186-332 (509)
250 COG1136 SalX ABC-type antimicr 96.1 0.02 4.4E-07 52.3 7.5 58 264-321 149-209 (226)
251 cd03115 SRP The signal recogni 96.1 0.046 9.9E-07 48.3 9.7 21 192-212 2-22 (173)
252 PRK06067 flagellar accessory p 96.1 0.042 9.1E-07 51.3 9.9 49 188-240 23-71 (234)
253 cd03244 ABCC_MRP_domain2 Domai 96.1 0.07 1.5E-06 49.2 11.2 53 268-320 150-203 (221)
254 cd02019 NK Nucleoside/nucleoti 96.1 0.0038 8.3E-08 45.8 2.2 22 192-213 1-22 (69)
255 COG0468 RecA RecA/RadA recombi 96.1 0.037 8E-07 52.5 9.3 92 187-285 57-151 (279)
256 TIGR03499 FlhF flagellar biosy 96.1 0.021 4.5E-07 54.9 7.8 25 189-213 193-217 (282)
257 COG0563 Adk Adenylate kinase a 96.1 0.008 1.7E-07 53.3 4.6 22 192-213 2-23 (178)
258 PRK09354 recA recombinase A; P 96.1 0.014 3.1E-07 57.0 6.7 90 188-285 58-148 (349)
259 PRK09270 nucleoside triphospha 96.1 0.005 1.1E-07 57.3 3.4 26 187-212 30-55 (229)
260 PRK06762 hypothetical protein; 96.1 0.0044 9.4E-08 54.5 2.9 22 191-212 3-24 (166)
261 PRK13543 cytochrome c biogenes 96.1 0.063 1.4E-06 49.3 10.7 55 267-321 147-203 (214)
262 PRK06547 hypothetical protein; 96.1 0.0079 1.7E-07 53.1 4.4 26 188-213 13-38 (172)
263 PF05659 RPW8: Arabidopsis bro 96.0 0.11 2.3E-06 44.4 11.0 110 2-132 3-115 (147)
264 COG1419 FlhF Flagellar GTP-bin 96.0 0.076 1.7E-06 52.5 11.4 104 189-302 202-310 (407)
265 PRK14974 cell division protein 96.0 0.047 1E-06 53.5 10.0 25 188-212 138-162 (336)
266 cd03283 ABC_MutS-like MutS-lik 96.0 0.062 1.3E-06 48.7 10.2 22 191-212 26-47 (199)
267 TIGR00382 clpX endopeptidase C 96.0 0.036 7.8E-07 55.8 9.4 52 161-212 75-138 (413)
268 COG2842 Uncharacterized ATPase 96.0 0.081 1.8E-06 49.8 10.8 100 191-304 95-194 (297)
269 cd01122 GP4d_helicase GP4d_hel 96.0 0.092 2E-06 50.1 11.9 52 190-244 30-81 (271)
270 COG1223 Predicted ATPase (AAA+ 96.0 0.1 2.2E-06 48.0 11.1 51 163-213 121-174 (368)
271 PLN03187 meiotic recombination 96.0 0.03 6.6E-07 54.9 8.5 57 188-245 124-184 (344)
272 smart00534 MUTSac ATPase domai 96.0 0.05 1.1E-06 48.7 9.3 48 274-322 77-129 (185)
273 cd03264 ABC_drug_resistance_li 96.0 0.025 5.5E-07 51.8 7.5 54 267-320 140-194 (211)
274 cd03215 ABC_Carb_Monos_II This 96.0 0.12 2.6E-06 46.1 11.7 53 268-320 115-169 (182)
275 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.11 2.4E-06 47.3 11.4 49 273-323 106-159 (204)
276 PRK05703 flhF flagellar biosyn 95.9 0.083 1.8E-06 53.8 11.7 23 190-212 221-243 (424)
277 PRK10733 hflB ATP-dependent me 95.9 0.037 8.1E-07 59.6 9.6 50 163-212 152-207 (644)
278 TIGR03771 anch_rpt_ABC anchore 95.9 0.075 1.6E-06 49.1 10.4 54 267-320 123-178 (223)
279 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.048 1E-06 49.5 8.9 55 266-320 113-169 (200)
280 TIGR00959 ffh signal recogniti 95.9 0.14 3E-06 51.9 13.0 24 189-212 98-121 (428)
281 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0061 1.3E-07 54.7 3.0 23 190-212 3-25 (188)
282 PRK04132 replication factor C 95.9 0.097 2.1E-06 57.3 12.5 125 198-346 574-700 (846)
283 PRK00279 adk adenylate kinase; 95.9 0.046 1E-06 50.3 8.9 21 192-212 2-22 (215)
284 PRK09544 znuC high-affinity zi 95.9 0.065 1.4E-06 50.6 10.0 23 191-213 31-53 (251)
285 TIGR00708 cobA cob(I)alamin ad 95.9 0.036 7.9E-07 48.5 7.6 122 190-315 5-140 (173)
286 PRK03839 putative kinase; Prov 95.9 0.0056 1.2E-07 54.6 2.7 22 192-213 2-23 (180)
287 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.041 8.9E-07 47.8 8.0 118 191-321 26-146 (157)
288 COG0572 Udk Uridine kinase [Nu 95.8 0.0071 1.5E-07 54.6 3.1 25 188-212 6-30 (218)
289 PRK14722 flhF flagellar biosyn 95.8 0.09 1.9E-06 52.2 11.0 23 190-212 137-159 (374)
290 PRK06002 fliI flagellum-specif 95.8 0.039 8.5E-07 55.8 8.5 89 190-284 165-263 (450)
291 TIGR03740 galliderm_ABC gallid 95.8 0.09 2E-06 48.6 10.4 53 268-320 135-189 (223)
292 cd03213 ABCG_EPDR ABCG transpo 95.7 0.09 2E-06 47.4 10.1 116 191-316 36-172 (194)
293 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.19 4.1E-06 45.9 12.3 52 268-319 136-188 (207)
294 PRK04040 adenylate kinase; Pro 95.7 0.0078 1.7E-07 54.0 3.0 22 191-212 3-24 (188)
295 TIGR00390 hslU ATP-dependent p 95.7 0.024 5.1E-07 56.6 6.5 51 162-212 11-69 (441)
296 PRK08533 flagellar accessory p 95.7 0.071 1.5E-06 49.5 9.4 48 190-241 24-71 (230)
297 TIGR03522 GldA_ABC_ATP gliding 95.7 0.16 3.4E-06 49.4 12.3 54 268-321 144-198 (301)
298 PRK15056 manganese/iron transp 95.7 0.12 2.7E-06 49.3 11.3 54 268-321 153-208 (272)
299 PRK12723 flagellar biosynthesi 95.7 0.12 2.6E-06 51.7 11.4 106 189-301 173-282 (388)
300 PHA00729 NTP-binding motif con 95.7 0.014 3.1E-07 53.3 4.5 24 189-212 16-39 (226)
301 PRK04328 hypothetical protein; 95.7 0.055 1.2E-06 51.0 8.7 42 188-231 21-62 (249)
302 PRK10867 signal recognition pa 95.7 0.12 2.6E-06 52.4 11.5 24 189-212 99-122 (433)
303 TIGR00554 panK_bact pantothena 95.7 0.016 3.5E-07 55.5 5.0 25 188-212 60-84 (290)
304 PRK00771 signal recognition pa 95.7 0.11 2.4E-06 52.8 11.3 25 189-213 94-118 (437)
305 PRK07132 DNA polymerase III su 95.7 0.29 6.2E-06 47.3 13.5 71 274-346 89-160 (299)
306 COG0396 sufC Cysteine desulfur 95.6 0.11 2.5E-06 47.0 9.9 58 267-324 154-213 (251)
307 TIGR01420 pilT_fam pilus retra 95.6 0.032 6.9E-07 55.3 7.2 113 190-319 122-234 (343)
308 PRK00625 shikimate kinase; Pro 95.6 0.0077 1.7E-07 53.1 2.5 21 192-212 2-22 (173)
309 PRK13647 cbiO cobalt transport 95.6 0.094 2E-06 50.2 10.1 55 266-320 147-203 (274)
310 cd03232 ABC_PDR_domain2 The pl 95.6 0.077 1.7E-06 47.8 9.0 22 191-212 34-55 (192)
311 TIGR02239 recomb_RAD51 DNA rep 95.6 0.056 1.2E-06 52.7 8.6 49 188-236 94-146 (316)
312 cd01125 repA Hexameric Replica 95.6 0.06 1.3E-06 50.4 8.6 21 192-212 3-23 (239)
313 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.1 2.2E-06 48.5 10.0 41 188-230 18-58 (229)
314 cd02023 UMPK Uridine monophosp 95.6 0.0073 1.6E-07 54.8 2.2 21 192-212 1-21 (198)
315 PRK15064 ABC transporter ATP-b 95.6 0.11 2.3E-06 55.0 11.3 53 267-321 165-218 (530)
316 PRK00131 aroK shikimate kinase 95.5 0.0091 2E-07 52.7 2.8 23 190-212 4-26 (175)
317 PF01583 APS_kinase: Adenylyls 95.5 0.016 3.4E-07 49.9 4.0 35 190-226 2-36 (156)
318 PRK13545 tagH teichoic acids e 95.5 0.13 2.9E-06 53.1 11.4 54 267-320 153-208 (549)
319 cd03253 ABCC_ATM1_transporter 95.5 0.21 4.5E-06 46.6 12.1 54 267-320 147-201 (236)
320 TIGR02322 phosphon_PhnN phosph 95.5 0.0095 2.1E-07 53.0 2.8 23 191-213 2-24 (179)
321 cd03236 ABC_RNaseL_inhibitor_d 95.5 0.1 2.2E-06 49.4 9.8 23 191-213 27-49 (255)
322 PF00006 ATP-synt_ab: ATP synt 95.5 0.038 8.1E-07 50.5 6.6 37 191-231 16-52 (215)
323 cd02025 PanK Pantothenate kina 95.5 0.0075 1.6E-07 55.6 2.1 21 192-212 1-21 (220)
324 cd03287 ABC_MSH3_euk MutS3 hom 95.5 0.19 4.1E-06 46.3 11.3 47 274-321 109-160 (222)
325 cd03243 ABC_MutS_homologs The 95.5 0.12 2.6E-06 47.0 9.9 22 191-212 30-51 (202)
326 TIGR03575 selen_PSTK_euk L-ser 95.5 0.034 7.4E-07 54.4 6.6 21 193-213 2-22 (340)
327 TIGR00150 HI0065_YjeE ATPase, 95.5 0.019 4.2E-07 47.9 4.2 41 170-214 6-46 (133)
328 PRK05201 hslU ATP-dependent pr 95.5 0.032 6.9E-07 55.7 6.3 51 162-212 14-72 (443)
329 PF00406 ADK: Adenylate kinase 95.4 0.039 8.5E-07 47.5 6.3 18 195-212 1-18 (151)
330 PRK05917 DNA polymerase III su 95.4 0.26 5.6E-06 47.1 12.1 60 274-335 94-154 (290)
331 PF12775 AAA_7: P-loop contain 95.4 0.01 2.3E-07 56.5 2.8 33 173-212 23-55 (272)
332 PF08433 KTI12: Chromatin asso 95.4 0.039 8.5E-07 52.4 6.6 23 191-213 2-24 (270)
333 PRK10751 molybdopterin-guanine 95.4 0.015 3.3E-07 51.0 3.5 25 188-212 4-28 (173)
334 TIGR03263 guanyl_kin guanylate 95.4 0.012 2.6E-07 52.4 2.9 22 191-212 2-23 (180)
335 cd02024 NRK1 Nicotinamide ribo 95.4 0.0091 2E-07 53.3 2.1 22 192-213 1-22 (187)
336 PF12780 AAA_8: P-loop contain 95.4 0.11 2.3E-06 49.4 9.4 83 191-301 32-115 (268)
337 cd02021 GntK Gluconate kinase 95.4 0.01 2.2E-07 51.1 2.4 22 192-213 1-22 (150)
338 PRK13537 nodulation ABC transp 95.4 0.23 5.1E-06 48.3 12.1 55 267-321 148-204 (306)
339 TIGR00064 ftsY signal recognit 95.4 0.059 1.3E-06 51.4 7.7 25 188-212 70-94 (272)
340 KOG3347 Predicted nucleotide k 95.4 0.015 3.2E-07 48.7 3.1 35 190-231 7-41 (176)
341 cd02028 UMPK_like Uridine mono 95.3 0.013 2.8E-07 52.2 2.9 22 192-213 1-22 (179)
342 PRK10820 DNA-binding transcrip 95.3 0.089 1.9E-06 55.3 9.6 46 163-212 204-249 (520)
343 PF00158 Sigma54_activat: Sigm 95.3 0.047 1E-06 47.9 6.4 132 165-315 1-144 (168)
344 PRK00889 adenylylsulfate kinas 95.3 0.015 3.1E-07 51.6 3.3 24 190-213 4-27 (175)
345 PRK05986 cob(I)alamin adenolsy 95.3 0.062 1.4E-06 47.7 7.1 124 190-316 22-159 (191)
346 PRK10416 signal recognition pa 95.3 0.083 1.8E-06 51.5 8.7 25 189-213 113-137 (318)
347 PRK06217 hypothetical protein; 95.3 0.011 2.4E-07 52.9 2.4 23 192-214 3-25 (183)
348 KOG1532 GTPase XAB1, interacts 95.3 0.014 3.1E-07 53.8 3.1 28 187-214 16-43 (366)
349 PRK05439 pantothenate kinase; 95.3 0.023 5E-07 54.8 4.7 26 187-212 83-108 (311)
350 cd00227 CPT Chloramphenicol (C 95.3 0.012 2.7E-07 52.1 2.6 22 191-212 3-24 (175)
351 TIGR03411 urea_trans_UrtD urea 95.3 0.17 3.6E-06 47.4 10.5 54 267-320 153-207 (242)
352 PTZ00088 adenylate kinase 1; P 95.3 0.023 5E-07 52.6 4.4 21 192-212 8-28 (229)
353 PF07726 AAA_3: ATPase family 95.3 0.0088 1.9E-07 49.2 1.5 27 193-221 2-28 (131)
354 cd02020 CMPK Cytidine monophos 95.2 0.012 2.6E-07 50.3 2.4 21 192-212 1-21 (147)
355 KOG0727 26S proteasome regulat 95.2 0.049 1.1E-06 49.7 6.2 55 159-213 150-212 (408)
356 PRK13765 ATP-dependent proteas 95.2 0.03 6.4E-07 59.6 5.7 77 163-249 31-107 (637)
357 PF03205 MobB: Molybdopterin g 95.2 0.016 3.4E-07 49.3 3.0 39 191-230 1-39 (140)
358 COG1102 Cmk Cytidylate kinase 95.2 0.011 2.4E-07 50.2 2.0 22 192-213 2-23 (179)
359 KOG0733 Nuclear AAA ATPase (VC 95.2 0.08 1.7E-06 54.5 8.3 164 157-346 504-690 (802)
360 PLN03186 DNA repair protein RA 95.2 0.082 1.8E-06 52.0 8.3 57 188-245 121-181 (342)
361 PF06309 Torsin: Torsin; Inte 95.2 0.026 5.7E-07 46.3 4.0 51 163-213 25-76 (127)
362 PF03308 ArgK: ArgK protein; 95.2 0.037 8E-07 51.3 5.5 39 171-213 14-52 (266)
363 KOG2170 ATPase of the AAA+ sup 95.2 0.069 1.5E-06 50.3 7.2 118 163-300 82-203 (344)
364 PRK08972 fliI flagellum-specif 95.2 0.06 1.3E-06 54.3 7.3 40 190-233 162-201 (444)
365 COG1120 FepC ABC-type cobalami 95.2 0.2 4.2E-06 46.9 10.2 60 264-323 145-207 (258)
366 PRK13947 shikimate kinase; Pro 95.1 0.013 2.8E-07 51.7 2.4 21 192-212 3-23 (171)
367 COG1124 DppF ABC-type dipeptid 95.1 0.024 5.3E-07 51.7 4.1 57 267-323 151-210 (252)
368 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.21 4.5E-06 45.3 10.4 21 191-211 29-49 (200)
369 PRK03846 adenylylsulfate kinas 95.1 0.017 3.7E-07 52.4 3.2 25 188-212 22-46 (198)
370 PRK13949 shikimate kinase; Pro 95.1 0.014 3E-07 51.4 2.4 22 192-213 3-24 (169)
371 COG1936 Predicted nucleotide k 95.1 0.016 3.4E-07 50.0 2.6 20 192-211 2-21 (180)
372 KOG0736 Peroxisome assembly fa 95.1 0.12 2.6E-06 54.7 9.4 103 158-286 666-775 (953)
373 TIGR02329 propionate_PrpR prop 95.1 0.055 1.2E-06 56.5 7.1 47 163-213 212-258 (526)
374 PRK08149 ATP synthase SpaL; Va 95.1 0.083 1.8E-06 53.3 8.1 24 190-213 151-174 (428)
375 COG1428 Deoxynucleoside kinase 95.1 0.015 3.3E-07 51.9 2.5 25 190-214 4-28 (216)
376 PRK12726 flagellar biosynthesi 95.1 0.24 5.1E-06 49.0 10.9 102 189-299 205-311 (407)
377 KOG0731 AAA+-type ATPase conta 95.1 0.27 5.9E-06 52.7 12.1 159 163-347 311-494 (774)
378 TIGR01650 PD_CobS cobaltochela 95.1 0.04 8.6E-07 53.4 5.5 46 159-212 41-86 (327)
379 PRK00300 gmk guanylate kinase; 95.1 0.017 3.7E-07 52.7 2.9 24 190-213 5-28 (205)
380 PRK06731 flhF flagellar biosyn 95.0 0.24 5.2E-06 47.0 10.6 23 190-212 75-97 (270)
381 PRK10078 ribose 1,5-bisphospho 95.0 0.018 3.8E-07 51.7 2.9 23 191-213 3-25 (186)
382 COG0467 RAD55 RecA-superfamily 95.0 0.03 6.4E-07 53.2 4.6 42 188-231 21-62 (260)
383 KOG0728 26S proteasome regulat 95.0 0.64 1.4E-05 42.6 12.7 62 163-231 146-215 (404)
384 KOG0739 AAA+-type ATPase [Post 95.0 0.12 2.6E-06 48.5 8.3 100 159-285 128-235 (439)
385 PRK15453 phosphoribulokinase; 95.0 0.11 2.3E-06 49.2 8.1 25 188-212 3-27 (290)
386 PRK14530 adenylate kinase; Pro 95.0 0.016 3.4E-07 53.4 2.6 21 192-212 5-25 (215)
387 PF13481 AAA_25: AAA domain; P 95.0 0.047 1E-06 49.1 5.7 41 191-231 33-81 (193)
388 cd00544 CobU Adenosylcobinamid 95.0 0.09 1.9E-06 46.2 7.2 79 193-284 2-82 (169)
389 PRK11388 DNA-binding transcrip 95.0 0.088 1.9E-06 57.0 8.7 47 163-213 325-371 (638)
390 CHL00081 chlI Mg-protoporyphyr 95.0 0.024 5.1E-07 55.7 3.9 44 163-212 17-60 (350)
391 KOG0927 Predicted transporter 95.0 0.13 2.9E-06 52.3 9.0 59 264-323 228-287 (614)
392 PF00625 Guanylate_kin: Guanyl 95.0 0.023 4.9E-07 50.8 3.4 34 190-225 2-35 (183)
393 cd00071 GMPK Guanosine monopho 95.0 0.017 3.6E-07 49.0 2.4 21 192-212 1-21 (137)
394 cd03289 ABCC_CFTR2 The CFTR su 95.0 0.28 6.1E-06 46.9 11.1 53 267-319 148-201 (275)
395 TIGR02238 recomb_DMC1 meiotic 94.9 0.055 1.2E-06 52.6 6.3 57 188-245 94-154 (313)
396 PRK12597 F0F1 ATP synthase sub 94.9 0.054 1.2E-06 55.2 6.4 41 191-232 144-184 (461)
397 TIGR00764 lon_rel lon-related 94.9 0.052 1.1E-06 57.9 6.6 76 163-249 18-94 (608)
398 PRK12727 flagellar biosynthesi 94.9 0.085 1.8E-06 54.3 7.7 24 189-212 349-372 (559)
399 PRK08927 fliI flagellum-specif 94.9 0.086 1.9E-06 53.3 7.7 40 190-233 158-197 (442)
400 cd00464 SK Shikimate kinase (S 94.9 0.017 3.7E-07 49.8 2.5 20 193-212 2-21 (154)
401 PRK15439 autoinducer 2 ABC tra 94.9 0.2 4.4E-06 52.6 10.9 54 267-320 150-205 (510)
402 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.089 1.9E-06 52.2 7.7 109 188-317 60-169 (362)
403 TIGR02868 CydC thiol reductant 94.9 0.18 3.9E-06 53.3 10.5 23 190-212 361-383 (529)
404 cd03279 ABC_sbcCD SbcCD and ot 94.9 0.44 9.6E-06 43.7 11.8 21 191-211 29-49 (213)
405 TIGR01313 therm_gnt_kin carboh 94.9 0.015 3.3E-07 50.8 2.0 20 193-212 1-20 (163)
406 PF12061 DUF3542: Protein of u 94.9 0.077 1.7E-06 49.9 6.6 75 8-82 298-373 (402)
407 COG0488 Uup ATPase components 94.9 0.27 5.9E-06 51.3 11.4 65 264-334 446-511 (530)
408 PF08477 Miro: Miro-like prote 94.9 0.02 4.4E-07 46.8 2.7 22 193-214 2-23 (119)
409 PRK12339 2-phosphoglycerate ki 94.8 0.022 4.9E-07 51.4 3.0 24 190-213 3-26 (197)
410 PF03193 DUF258: Protein of un 94.8 0.045 9.7E-07 47.3 4.7 35 170-213 24-58 (161)
411 cd00820 PEPCK_HprK Phosphoenol 94.8 0.026 5.6E-07 45.1 2.9 21 191-211 16-36 (107)
412 PRK14738 gmk guanylate kinase; 94.8 0.028 6E-07 51.3 3.6 25 188-212 11-35 (206)
413 PF01078 Mg_chelatase: Magnesi 94.8 0.045 9.8E-07 49.2 4.8 42 163-212 3-44 (206)
414 cd01135 V_A-ATPase_B V/A-type 94.8 0.088 1.9E-06 49.7 6.9 51 191-241 70-123 (276)
415 COG1703 ArgK Putative periplas 94.8 0.039 8.4E-07 52.0 4.4 65 173-241 38-102 (323)
416 PRK14737 gmk guanylate kinase; 94.8 0.025 5.4E-07 50.6 3.1 24 189-212 3-26 (186)
417 PRK13536 nodulation factor exp 94.8 0.32 7E-06 48.0 11.2 56 267-322 182-239 (340)
418 PRK10636 putative ABC transpor 94.8 0.28 6.1E-06 53.0 11.7 53 267-321 159-212 (638)
419 PF03266 NTPase_1: NTPase; In 94.7 0.02 4.3E-07 50.3 2.4 21 193-213 2-22 (168)
420 PRK14527 adenylate kinase; Pro 94.7 0.022 4.8E-07 51.3 2.8 24 189-212 5-28 (191)
421 COG2274 SunT ABC-type bacterio 94.7 0.17 3.6E-06 54.8 9.8 22 191-212 500-521 (709)
422 PTZ00035 Rad51 protein; Provis 94.7 0.22 4.7E-06 49.1 9.9 56 188-244 116-175 (337)
423 cd01129 PulE-GspE PulE/GspE Th 94.7 0.077 1.7E-06 50.4 6.5 108 190-318 80-187 (264)
424 TIGR02030 BchI-ChlI magnesium 94.7 0.039 8.6E-07 54.1 4.6 44 163-212 4-47 (337)
425 cd03284 ABC_MutS1 MutS1 homolo 94.7 0.16 3.4E-06 46.7 8.3 21 191-211 31-51 (216)
426 PRK05057 aroK shikimate kinase 94.7 0.022 4.8E-07 50.3 2.6 22 191-212 5-26 (172)
427 cd01121 Sms Sms (bacterial rad 94.7 0.087 1.9E-06 52.5 7.0 40 189-230 81-120 (372)
428 cd02027 APSK Adenosine 5'-phos 94.7 0.022 4.7E-07 49.0 2.4 21 192-212 1-21 (149)
429 TIGR01425 SRP54_euk signal rec 94.7 0.65 1.4E-05 47.0 13.2 25 188-212 98-122 (429)
430 PLN02200 adenylate kinase fami 94.7 0.025 5.5E-07 52.6 3.0 24 189-212 42-65 (234)
431 PTZ00494 tuzin-like protein; P 94.7 4.5 9.7E-05 40.9 18.3 171 159-347 367-543 (664)
432 PRK13948 shikimate kinase; Pro 94.6 0.025 5.4E-07 50.3 2.8 25 188-212 8-32 (182)
433 PLN02318 phosphoribulokinase/u 94.6 0.041 8.9E-07 57.2 4.6 26 188-213 63-88 (656)
434 PRK10938 putative molybdenum t 94.6 0.28 6.2E-06 51.3 11.1 22 191-212 30-51 (490)
435 PRK15424 propionate catabolism 94.6 0.078 1.7E-06 55.4 6.7 47 163-213 219-265 (538)
436 COG2019 AdkA Archaeal adenylat 94.6 0.031 6.7E-07 47.8 3.0 23 190-212 4-26 (189)
437 PRK13407 bchI magnesium chelat 94.6 0.032 6.9E-07 54.7 3.6 46 161-212 6-51 (334)
438 cd01136 ATPase_flagellum-secre 94.6 0.15 3.2E-06 49.7 8.2 23 191-213 70-92 (326)
439 PRK13409 putative ATPase RIL; 94.6 0.31 6.8E-06 52.0 11.4 55 267-321 463-520 (590)
440 PF00005 ABC_tran: ABC transpo 94.6 0.031 6.8E-07 47.1 3.2 23 191-213 12-34 (137)
441 COG0542 clpA ATP-binding subun 94.6 0.038 8.3E-07 59.3 4.4 159 163-347 170-345 (786)
442 PRK15064 ABC transporter ATP-b 94.5 0.38 8.2E-06 50.9 11.9 54 267-322 448-502 (530)
443 PRK14723 flhF flagellar biosyn 94.5 0.18 4E-06 54.4 9.4 24 190-213 185-208 (767)
444 PRK13975 thymidylate kinase; P 94.5 0.027 5.9E-07 50.9 2.8 23 191-213 3-25 (196)
445 PTZ00185 ATPase alpha subunit; 94.5 0.08 1.7E-06 54.0 6.3 46 191-236 190-241 (574)
446 PRK09280 F0F1 ATP synthase sub 94.5 0.081 1.8E-06 53.8 6.3 93 191-284 145-247 (463)
447 PF13521 AAA_28: AAA domain; P 94.5 0.029 6.2E-07 49.1 2.8 20 193-212 2-21 (163)
448 PRK05922 type III secretion sy 94.4 0.16 3.4E-06 51.4 8.2 23 191-213 158-180 (434)
449 TIGR00073 hypB hydrogenase acc 94.4 0.031 6.7E-07 51.0 3.0 26 187-212 19-44 (207)
450 PRK10875 recD exonuclease V su 94.4 0.17 3.6E-06 53.9 8.8 22 191-212 168-189 (615)
451 PRK05800 cobU adenosylcobinami 94.4 0.16 3.4E-06 44.7 7.3 21 192-212 3-23 (170)
452 TIGR03375 type_I_sec_LssB type 94.4 0.5 1.1E-05 51.8 12.9 22 191-212 492-513 (694)
453 PRK13409 putative ATPase RIL; 94.4 0.26 5.6E-06 52.6 10.2 23 190-212 99-121 (590)
454 PF13245 AAA_19: Part of AAA d 94.4 0.036 7.8E-07 41.4 2.7 22 191-212 11-33 (76)
455 PF06414 Zeta_toxin: Zeta toxi 94.4 0.12 2.6E-06 46.9 6.6 103 187-303 12-119 (199)
456 PRK09825 idnK D-gluconate kina 94.4 0.031 6.7E-07 49.5 2.8 23 191-213 4-26 (176)
457 cd01672 TMPK Thymidine monopho 94.3 0.077 1.7E-06 47.8 5.5 22 192-213 2-23 (200)
458 TIGR03305 alt_F1F0_F1_bet alte 94.3 0.078 1.7E-06 53.7 5.8 50 191-241 139-189 (449)
459 PRK06761 hypothetical protein; 94.3 0.06 1.3E-06 51.2 4.7 23 191-213 4-26 (282)
460 PRK07594 type III secretion sy 94.3 0.12 2.6E-06 52.2 7.1 38 190-231 155-192 (433)
461 TIGR01818 ntrC nitrogen regula 94.3 0.35 7.6E-06 50.2 10.9 165 163-346 134-320 (463)
462 TIGR02788 VirB11 P-type DNA tr 94.3 0.1 2.2E-06 50.8 6.5 114 190-319 144-257 (308)
463 PRK10923 glnG nitrogen regulat 94.3 0.27 5.8E-06 51.2 10.0 47 163-213 138-184 (469)
464 PF11868 DUF3388: Protein of u 94.3 0.13 2.8E-06 43.5 6.0 93 170-300 36-133 (192)
465 TIGR02236 recomb_radA DNA repa 94.3 0.096 2.1E-06 51.1 6.3 51 188-238 93-147 (310)
466 PRK07721 fliI flagellum-specif 94.3 0.21 4.5E-06 50.9 8.8 25 189-213 157-181 (438)
467 PLN02796 D-glycerate 3-kinase 94.3 0.04 8.6E-07 53.7 3.5 25 188-212 98-122 (347)
468 PRK14257 phosphate ABC transpo 94.3 0.56 1.2E-05 46.1 11.6 23 191-213 109-131 (329)
469 COG3640 CooC CO dehydrogenase 94.3 0.062 1.3E-06 48.8 4.4 21 192-212 2-22 (255)
470 PRK12678 transcription termina 94.3 0.052 1.1E-06 56.0 4.4 22 191-212 417-438 (672)
471 PRK04182 cytidylate kinase; Pr 94.3 0.032 7E-07 49.5 2.7 21 192-212 2-22 (180)
472 PF03796 DnaB_C: DnaB-like hel 94.3 0.19 4E-06 47.7 8.0 53 191-246 20-72 (259)
473 TIGR00176 mobB molybdopterin-g 94.2 0.028 6.1E-07 48.6 2.2 22 192-213 1-22 (155)
474 TIGR03498 FliI_clade3 flagella 94.2 0.12 2.6E-06 52.2 6.9 23 191-213 141-163 (418)
475 PRK14532 adenylate kinase; Pro 94.2 0.03 6.6E-07 50.2 2.5 20 193-212 3-22 (188)
476 PLN03073 ABC transporter F fam 94.2 0.43 9.2E-06 52.1 11.6 53 267-321 637-690 (718)
477 PRK11650 ugpC glycerol-3-phosp 94.2 0.096 2.1E-06 52.1 6.2 56 266-321 143-201 (356)
478 PRK13946 shikimate kinase; Pro 94.2 0.032 6.9E-07 49.9 2.5 23 190-212 10-32 (184)
479 KOG0729 26S proteasome regulat 94.2 0.42 9.2E-06 44.2 9.6 56 163-220 177-239 (435)
480 PRK11147 ABC transporter ATPas 94.2 0.53 1.1E-05 51.0 12.2 52 268-321 451-503 (635)
481 PHA02774 E1; Provisional 94.2 0.2 4.3E-06 52.1 8.3 38 170-212 419-456 (613)
482 PRK11160 cysteine/glutathione 94.2 0.43 9.4E-06 51.0 11.4 24 190-213 366-389 (574)
483 PRK04301 radA DNA repair and r 94.1 0.096 2.1E-06 51.3 6.0 52 188-239 100-155 (317)
484 PLN02348 phosphoribulokinase 94.1 0.04 8.8E-07 54.5 3.2 25 188-212 47-71 (395)
485 cd01428 ADK Adenylate kinase ( 94.1 0.032 6.9E-07 50.3 2.4 20 193-212 2-21 (194)
486 PRK10463 hydrogenase nickel in 94.1 0.084 1.8E-06 50.3 5.3 25 188-212 102-126 (290)
487 TIGR02173 cyt_kin_arch cytidyl 94.1 0.036 7.8E-07 48.8 2.7 21 192-212 2-22 (171)
488 PRK10636 putative ABC transpor 94.1 0.44 9.5E-06 51.5 11.4 54 267-322 440-494 (638)
489 TIGR02915 PEP_resp_reg putativ 94.1 0.18 3.9E-06 52.0 8.3 46 163-212 139-184 (445)
490 COG3267 ExeA Type II secretory 94.1 1.3 2.8E-05 41.1 12.5 146 188-347 49-212 (269)
491 TIGR03574 selen_PSTK L-seryl-t 94.1 0.029 6.3E-07 52.9 2.2 21 192-212 1-21 (249)
492 COG0237 CoaE Dephospho-CoA kin 94.1 0.038 8.2E-07 49.9 2.8 22 191-212 3-24 (201)
493 KOG0735 AAA+-type ATPase [Post 94.1 0.36 7.7E-06 50.9 9.9 127 163-315 667-814 (952)
494 TIGR02768 TraA_Ti Ti-type conj 94.1 0.39 8.5E-06 52.7 11.1 22 191-212 369-390 (744)
495 PF13086 AAA_11: AAA domain; P 94.1 0.084 1.8E-06 48.8 5.3 21 192-212 19-39 (236)
496 PF00154 RecA: recA bacterial 94.1 0.12 2.7E-06 50.0 6.4 91 187-285 50-141 (322)
497 PF01926 MMR_HSR1: 50S ribosom 94.1 0.047 1E-06 44.6 3.1 21 193-213 2-22 (116)
498 cd02029 PRK_like Phosphoribulo 94.1 0.14 3.1E-06 48.0 6.5 21 192-212 1-21 (277)
499 COG0194 Gmk Guanylate kinase [ 94.1 0.043 9.4E-07 48.1 2.9 23 191-213 5-27 (191)
500 PF03029 ATP_bind_1: Conserved 94.1 0.049 1.1E-06 50.8 3.5 20 195-214 1-20 (238)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-66 Score=556.85 Aligned_cols=471 Identities=30% Similarity=0.475 Sum_probs=378.1
Q ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHhhchhhhhhhhHhHHHHHH
Q 037039 10 KLLEKLGSSAYEELLLFCGVKNDLHKLKEKLTTVKSVVLDAEEKQNHNRRLSDWLGKLKDACYDAEDVLDEFEVEDQRRQ 89 (505)
Q Consensus 10 ~l~~kl~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~ 89 (505)
..++|+.+++.+++..+.++++.+..|+++|..++.+++|+++++.....+..|...+++++|++||+++.|.......+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~ 86 (889)
T KOG4658|consen 7 FGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERK 86 (889)
T ss_pred EehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999988889999999999999999999999998876543
Q ss_pred Hhhhcc---cccccccccccCcchhHHhhHHHHHHHHHHHHHHHHhhhccccceeccCcccc-cccccccCCCCCCC-Cc
Q 037039 90 VMKQRS---IGRKFRNFFGSSNPIAFRFRMGHQIKKIRERFDEIAKLSGEFNLIERLDDHRR-VVHKEREATQPNVP-PD 164 (505)
Q Consensus 90 ~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 164 (505)
....-. ...+..++ ..++++.+..+..+..++..+......++.......... ..+.....+.|..+ ..
T Consensus 87 ~~~~l~~~~~~~~~~c~------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 87 ANDLLSTRSVERQRLCL------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HhHHhhhhHHHHHHHhh------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 211000 00011111 134556666666666666666655555543321111100 11111222333333 34
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc-ccccCCceEEEEecCCCCHHHHHHHHHH
Q 037039 165 IIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR-VKEHFELKIWIRVFEDFGERQIMRKIME 243 (505)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~il~ 243 (505)
||.+..++++.+.|.... ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++.+|++
T Consensus 161 -VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 999999999999998653 38999999999999999999999987 9999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh-hc
Q 037039 244 LIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI-MG 322 (505)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~-~~ 322 (505)
.++.... .....+..+++..|.+.|++|||||||||||+. .+|+.+..++|...+||+|++|||++.|+.. ++
T Consensus 234 ~l~~~~~----~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~ 307 (889)
T KOG4658|consen 234 RLGLLDE----EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG 307 (889)
T ss_pred HhccCCc----ccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc
Confidence 8854210 001111245888999999999999999999986 5699999999999999999999999999998 65
Q ss_pred cCCCCCceeCCCCChhhhHHHHHHh------------------------------HHhhhhccCCCChHHHHHHHccccc
Q 037039 323 TRGGTTGYNLQGLPFEDCLSLFMKF------------------------------RTLGSVLCGKTDKRDWEFVRDNEIW 372 (505)
Q Consensus 323 ~~~~~~~~~l~~L~~~~~~~Lf~~~------------------------------~~ig~~L~~~~~~~~w~~~~~~~~~ 372 (505)
.. ..+++.+|+.+|||.||++. .++|+.|+.|.+..+|+.+.+...+
T Consensus 308 ~~---~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 308 VD---YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred CC---ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 54 88999999999999999987 8899999999999999999987765
Q ss_pred cc----cccCCcchhHHHhhHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHH
Q 037039 373 QL----EQMERGILPTLRLSYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLKELL 448 (505)
Q Consensus 373 ~~----~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~ 448 (505)
.+ ++..+.++++|.+||++||+++|.||+|||+||+||.|+++.|+.+||||||+.+..+.+.++++|++|+.+|+
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 52 22356789999999999999999999999999999999999999999999999997766789999999999999
Q ss_pred HcCCccccccCCCCCceeEEEeChhHHHHHHHhhh-----cccEEEcCCC-----C--CCCCCceeeeC
Q 037039 449 SRFFFQDLSFGMLGMETFSFKMHDLMHDLAQQVAK-----DEFLVVNSDC-----Q--FIPKRVRHLSF 505 (505)
Q Consensus 449 ~~sll~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~-----~--~~~~~~rhlsi 505 (505)
++||++..... + +...|+|||+||++|.++|+ +|+.++..+. + ..+..+||+|+
T Consensus 465 ~~~Ll~~~~~~--~-~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 465 RASLLIEERDE--G-RKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred HHHHHhhcccc--c-ceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 99999987654 4 67899999999999999999 7776665431 1 13556788873
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-41 Score=328.09 Aligned_cols=252 Identities=37% Similarity=0.611 Sum_probs=198.8
Q ss_pred cchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHH
Q 037039 168 RDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIE 247 (505)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 247 (505)
||.++++|.+.|... ..+.++|+|+||||+||||||..++++..++.+|+.++|+.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 789999999999864 2678999999999999999999999977789999999999999999998889998888843
Q ss_pred hhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhccCCCC
Q 037039 248 QIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGTRGGT 327 (505)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~~~~~ 327 (505)
.... .....+..+....+.+.|.++++||||||||+. ..|+.+...++....||+||||||+..++..++.. .
T Consensus 77 ~~~~---~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~ 149 (287)
T PF00931_consen 77 PDSS---ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--D 149 (287)
T ss_dssp C-ST---SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC--E
T ss_pred cccc---cccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc--c
Confidence 2100 012334455889999999999999999999864 68988888888888899999999999998776541 2
Q ss_pred CceeCCCCChhhhHHHHHHh------------------------------HHhhhhccCCCChHHHHHHHccccccccc-
Q 037039 328 TGYNLQGLPFEDCLSLFMKF------------------------------RTLGSVLCGKTDKRDWEFVRDNEIWQLEQ- 376 (505)
Q Consensus 328 ~~~~l~~L~~~~~~~Lf~~~------------------------------~~ig~~L~~~~~~~~w~~~~~~~~~~~~~- 376 (505)
..+++++|+.++|++||.+. ..+|+.|+.+.+..+|..+++........
T Consensus 150 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~ 229 (287)
T PF00931_consen 150 KVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRES 229 (287)
T ss_dssp EEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999976 67888886665778999988765444422
Q ss_pred --cCCcchhHHHhhHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccC
Q 037039 377 --MERGILPTLRLSYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSH 430 (505)
Q Consensus 377 --~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~ 430 (505)
....+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|+|||||.+.
T Consensus 230 ~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 230 RDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 345689999999999999999999999999999999999999999999999764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-35 Score=334.94 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccceeccC-----cccccccccccCCCCCCCCcccccchhHHHHHHHHhcCCCCCCCcee
Q 037039 117 GHQIKKIRERFDEIAKLSGEFNLIERLD-----DHRRVVHKEREATQPNVPPDIIGRDKDREKIIELLMQTSDGKSETVS 191 (505)
Q Consensus 117 ~~~i~~l~~~l~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 191 (505)
..++++|++.|.+++...+........+ .....+......+.+.....+||++..++++..+|... ...++
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~ 208 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVR 208 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCceE
Confidence 3578999999999999876321111100 01111111122223333478999999999999988543 35689
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEe---cCC---C--------C-HHHHHHHHHHHHHHhhhhccccC
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRV---FED---F--------G-ERQIMRKIMELIIEQIMTNYVFQ 256 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---~~~---~--------~-~~~~~~~il~~l~~~~~~~~~~~ 256 (505)
+|+|+||||+||||||+.+|+ ++..+|++.+|+.. ... + + ...+..+++.++...
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~-------- 278 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDK-------- 278 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCC--------
Confidence 999999999999999999999 67788998888742 111 0 0 112333334433221
Q ss_pred CCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhccCCCCCceeCCCCC
Q 037039 257 GDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~~~~~~~~~l~~L~ 336 (505)
.+.... ....+++.|++||+||||||||+. ..|+.+.......++||+||||||+..++..++.. ..|+++.|+
T Consensus 279 ~~~~~~-~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~ 352 (1153)
T PLN03210 279 KDIKIY-HLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPS 352 (1153)
T ss_pred CCcccC-CHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCC
Confidence 111111 124577889999999999999854 67888887666678899999999999999876554 789999999
Q ss_pred hhhhHHHHHHh-----------------------------HHhhhhccCCCChHHHHHHHccccccccccCCcchhHHHh
Q 037039 337 FEDCLSLFMKF-----------------------------RTLGSVLCGKTDKRDWEFVRDNEIWQLEQMERGILPTLRL 387 (505)
Q Consensus 337 ~~~~~~Lf~~~-----------------------------~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~ 387 (505)
.++||+||+++ +++|+.|+++ +..+|+.+++++... ....|..+|++
T Consensus 353 ~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~ 428 (1153)
T PLN03210 353 NELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRV 428 (1153)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHH
Confidence 99999999875 7889999987 589999998876442 23579999999
Q ss_pred hHhcccH-HHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCCcee
Q 037039 388 SYDQLSP-HLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLKELLSRFFFQDLSFGMLGMETF 466 (505)
Q Consensus 388 sy~~L~~-~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~ 466 (505)
||+.|++ ..|.||+++|+||.+..++ .+..|++.+.... +.-++.|+++||++... +
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~----~---- 486 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE----D---- 486 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC----C----
Confidence 9999986 5999999999999886553 4778888765432 22389999999998632 2
Q ss_pred EEEeChhHHHHHHHhhhccc
Q 037039 467 SFKMHDLMHDLAQQVAKDEF 486 (505)
Q Consensus 467 ~~~mHdlv~~~a~~~~~~e~ 486 (505)
.+.|||++|++|+.+++++.
T Consensus 487 ~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 487 IVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred eEEhhhHHHHHHHHHHHhhc
Confidence 69999999999999987663
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.5e-11 Score=138.40 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=162.5
Q ss_pred CCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC-CCCHHHH
Q 037039 159 PNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE-DFGERQI 237 (505)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~ 237 (505)
|..+..++-|+.-.+. |.. ....+++.|+|++|.||||++...... ++.++|+++.. +.++..+
T Consensus 10 p~~~~~~~~R~rl~~~----l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f 74 (903)
T PRK04841 10 PVRLHNTVVRERLLAK----LSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERF 74 (903)
T ss_pred CCCccccCcchHHHHH----Hhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHH
Confidence 4444667777754444 432 245689999999999999999988752 33689999964 4566777
Q ss_pred HHHHHHHHHHhhhhcccc------CCCCCc-hHHHHHHHHHcC--CceEEEEEecCCCCChhhHH-HHHHhhcCCCCCcE
Q 037039 238 MRKIMELIIEQIMTNYVF------QGDLNT-HRLQQILRDCLN--GKRYLLVMDDVWNEDPEAWR-NLKSLLLGGANGSK 307 (505)
Q Consensus 238 ~~~il~~l~~~~~~~~~~------~~~~~~-~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~ 307 (505)
+..++..+.......... ..+... ..+...+...+. +.+++|||||+...+..... .+...+....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 888888775322110000 001111 123333333332 67999999999765544444 44444455566778
Q ss_pred EEEecCChHHHH--hhccCCCCCceeCC----CCChhhhHHHHHHh------------------------HHhhhhccCC
Q 037039 308 ILVTTRSRKVAS--IMGTRGGTTGYNLQ----GLPFEDCLSLFMKF------------------------RTLGSVLCGK 357 (505)
Q Consensus 308 iivTTR~~~va~--~~~~~~~~~~~~l~----~L~~~~~~~Lf~~~------------------------~~ig~~L~~~ 357 (505)
+|||||...-.. .+...+ ....+. +|+.+|+..||... ..++..+...
T Consensus 155 lv~~sR~~~~~~~~~l~~~~--~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRD--QLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EEEEeCCCCCCchHhHHhcC--cceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 989999842111 111111 234455 89999999999753 0111111110
Q ss_pred CChHHHHHHHccccccccc-cCCcchhHHHh-hHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCC
Q 037039 358 TDKRDWEFVRDNEIWQLEQ-MERGILPTLRL-SYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEE 435 (505)
Q Consensus 358 ~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~ 435 (505)
.... ....+.+.. ....+...|.- .++.||++.+..+..+|+++. ++.+-+-. +...
T Consensus 233 ~~~~------~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~------l~~~------ 291 (903)
T PRK04841 233 NSSL------HDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVR------VTGE------ 291 (903)
T ss_pred CCch------hhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHH------HcCC------
Confidence 0000 000001111 11234444433 489999999999999999973 44332221 1111
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCCCceeEEEeChhHHHHHHHhh
Q 037039 436 LEDIGMRYLKELLSRFFFQDLSFGMLGMETFSFKMHDLMHDLAQQVA 482 (505)
Q Consensus 436 ~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 482 (505)
+.+...+++|.+.++|.....+ ....|+.|+++++++....
T Consensus 292 --~~~~~~L~~l~~~~l~~~~~~~----~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 --ENGQMRLEELERQGLFIQRMDD----SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CcHHHHHHHHHHCCCeeEeecC----CCCEEehhHHHHHHHHHHH
Confidence 1246789999999997643222 2347889999999998765
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1e-09 Score=111.39 Aligned_cols=308 Identities=13% Similarity=0.066 Sum_probs=166.2
Q ss_pred CCCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 157 TQPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
...+.|..++||++++++|...|...-. +.....+.|+|++|+|||++++.++++.......-..++++.....+...
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3345668899999999999999854321 23345578999999999999999998432222122455666666667777
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC--CceEEEEEecCCCCC----hhhHHHHHHhhcCCCCCcE--E
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNED----PEAWRNLKSLLLGGANGSK--I 308 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~~~~gs~--i 308 (505)
++..++.++... .......+..++...+.+.+. +++.+||||+++... .+.+..+...+... ++++ +
T Consensus 102 ~~~~i~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~v 176 (394)
T PRK00411 102 IFSEIARQLFGH----PPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGV 176 (394)
T ss_pred HHHHHHHHhcCC----CCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEE
Confidence 888888877321 001112233445666666664 457899999997532 23344444433322 2333 5
Q ss_pred EEecCChHHHHhhc----cCCCCCceeCCCCChhhhHHHHHHhHHhh---------------hhccC-CCChHHHHHHHc
Q 037039 309 LVTTRSRKVASIMG----TRGGTTGYNLQGLPFEDCLSLFMKFRTLG---------------SVLCG-KTDKRDWEFVRD 368 (505)
Q Consensus 309 ivTTR~~~va~~~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~ig---------------~~L~~-~~~~~~w~~~~~ 368 (505)
|.++....+..... ..-....+.+.+++.++..+++......+ ..-.. ..+......++.
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66655544332211 11112457899999999988887652111 00000 001110001110
Q ss_pred ccccccc--cc-----CCcch--------hHHHhhHhcccHHHHHHHHHhccC-CC-CCccchhhHHHH--HHhccCccc
Q 037039 369 NEIWQLE--QM-----ERGIL--------PTLRLSYDQLSPHLKQCFAYCSIF-PR-DYQFYGDSLVQF--WMAHGLLQS 429 (505)
Q Consensus 369 ~~~~~~~--~~-----~~~i~--------~~l~~sy~~L~~~~k~cfl~ls~f-p~-~~~i~~~~Li~~--Wiaeg~i~~ 429 (505)
.. .... .. ...+. ..+.-.+..||.+.|..+..++-. .. ...+....+... .+++.+-..
T Consensus 257 ~a-~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 257 RA-GLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HH-HHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 00 0000 00 01121 123346889999988877665533 21 133555555533 233222111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccc--CCCCCceeEEEeChhHHHH
Q 037039 430 HNKKEELEDIGMRYLKELLSRFFFQDLSF--GMLGMETFSFKMHDLMHDL 477 (505)
Q Consensus 430 ~~~~~~~e~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~~mHdlv~~~ 477 (505)
........+|+++|...|++..... +..| +.+.++++.---++
T Consensus 336 ----~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g-~~~~~~~~~~~~~~ 380 (394)
T PRK00411 336 ----PRTHTRFYEYINKLDMLGIINTRYSGKGGRG-RTRLISLSYDPEDV 380 (394)
T ss_pred ----cCcHHHHHHHHHHHHhcCCeEEEEecCCCCC-CeEEEEecCCHHHH
Confidence 0122345679999999999986532 2234 55666665433333
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.28 E-value=3.1e-10 Score=117.92 Aligned_cols=291 Identities=19% Similarity=0.223 Sum_probs=171.1
Q ss_pred CCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC-CCCHHHH
Q 037039 159 PNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE-DFGERQI 237 (505)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~ 237 (505)
|..+...+-|.. +++.|.. ....+.+.|..++|.|||||+..... . ...=..+.|.++++ +.++..+
T Consensus 15 P~~~~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF 82 (894)
T COG2909 15 PVRPDNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARF 82 (894)
T ss_pred CCCcccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHH
Confidence 444456666654 5555543 34679999999999999999988864 1 12234789999886 5677788
Q ss_pred HHHHHHHHHHhhhhccc-------cCCCCCchHHHHHHHHHcC--CceEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcE
Q 037039 238 MRKIMELIIEQIMTNYV-------FQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSK 307 (505)
Q Consensus 238 ~~~il~~l~~~~~~~~~-------~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~ 307 (505)
...++..+..-...... .....+-..+...+..-+. .++..+||||..-. ++.--..+...+.+.+++-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 88888888542210000 0001111113333333332 46899999998743 33334456666667778899
Q ss_pred EEEecCChHHHHhhccCCCCCceeC----CCCChhhhHHHHHHhH------HhhhhccCCCChHHHHHHHcccccccc--
Q 037039 308 ILVTTRSRKVASIMGTRGGTTGYNL----QGLPFEDCLSLFMKFR------TLGSVLCGKTDKRDWEFVRDNEIWQLE-- 375 (505)
Q Consensus 308 iivTTR~~~va~~~~~~~~~~~~~l----~~L~~~~~~~Lf~~~~------~ig~~L~~~~~~~~w~~~~~~~~~~~~-- 375 (505)
.|+|||+..-.......-....+++ -.|+.+|+-++|.... .=.+.|.. ..+-|-..+.-....+.
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~--~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYD--RTEGWAAALQLIALALRNN 240 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHh--hcccHHHHHHHHHHHccCC
Confidence 9999998853322111111122222 3478899999998651 00111111 13344433211000001
Q ss_pred -----------ccCCcchhH-HHhhHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHH
Q 037039 376 -----------QMERGILPT-LRLSYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRY 443 (505)
Q Consensus 376 -----------~~~~~i~~~-l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~ 443 (505)
+..+.+..- ..--++.||+++|..++-||+++. +. ..|+. .-.+ ++.+...
T Consensus 241 ~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~---------~Ltg----~~ng~am 303 (894)
T COG2909 241 TSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCN---------ALTG----EENGQAM 303 (894)
T ss_pred CcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHH---------HHhc----CCcHHHH
Confidence 011112222 234689999999999999999975 22 22222 2112 2346788
Q ss_pred HHHHHHcCCccccccCCCCCceeEEEeChhHHHHHHHhhhc
Q 037039 444 LKELLSRFFFQDLSFGMLGMETFSFKMHDLMHDLAQQVAKD 484 (505)
Q Consensus 444 l~~L~~~sll~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 484 (505)
+++|.+++|+...-++ ....|+.|.+..+|.+..-..
T Consensus 304 Le~L~~~gLFl~~Ldd----~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 304 LEELERRGLFLQRLDD----EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHhCCCceeeecC----CCceeehhHHHHHHHHhhhcc
Confidence 9999999998654333 346999999999998876554
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.8e-09 Score=106.91 Aligned_cols=292 Identities=15% Similarity=0.054 Sum_probs=156.3
Q ss_pred CCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccc-ccC---CceEEEEecCCCC
Q 037039 158 QPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVK-EHF---ELKIWIRVFEDFG 233 (505)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~v~~~~~ 233 (505)
..+.|..++||+.++++|...|..... +.....+.|+|++|+|||++++.+++..... ... -..+|++.....+
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 345667899999999999999875321 2334578999999999999999999742111 111 1346777777667
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC--CceEEEEEecCCCCC---hhhHHHHHHhh--cCCC-CC
Q 037039 234 ERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNED---PEAWRNLKSLL--LGGA-NG 305 (505)
Q Consensus 234 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~---~~~~~~l~~~l--~~~~-~g 305 (505)
...++..|+.++.. ..... .....+..++...+.+.+. +++++||||+++... ......+.... .... ..
T Consensus 88 ~~~~~~~i~~~l~~-~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 88 LYQVLVELANQLRG-SGEEV-PTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred HHHHHHHHHHHHhh-cCCCC-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 77888888888842 00000 1112233344455555553 568999999997541 12222332221 1111 22
Q ss_pred cEEEEecCChHHHHhh----ccCCCCCceeCCCCChhhhHHHHHHhHHhhh---hccC-------------CCChHHHHH
Q 037039 306 SKILVTTRSRKVASIM----GTRGGTTGYNLQGLPFEDCLSLFMKFRTLGS---VLCG-------------KTDKRDWEF 365 (505)
Q Consensus 306 s~iivTTR~~~va~~~----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ig~---~L~~-------------~~~~~~w~~ 365 (505)
..+|.+|........+ ...-....+.+.+.+.++..+++......+. .+.. ..+...-..
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 3445555434322111 1111114578999999998888876522110 0000 001100000
Q ss_pred HHccccc-cccccC-----Ccch--------hHHHhhHhcccHHHHHHHHHhccC--CCCCccchhhHHHHHH--hccCc
Q 037039 366 VRDNEIW-QLEQME-----RGIL--------PTLRLSYDQLSPHLKQCFAYCSIF--PRDYQFYGDSLVQFWM--AHGLL 427 (505)
Q Consensus 366 ~~~~~~~-~~~~~~-----~~i~--------~~l~~sy~~L~~~~k~cfl~ls~f--p~~~~i~~~~Li~~Wi--aeg~i 427 (505)
++..... ...... ..+. ....-++..||.+.+..+..+... .++-.+...++...+- ++.+
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~- 324 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI- 324 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-
Confidence 0000000 000000 0111 122345688999988776665522 1334466666666431 2211
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 037039 428 QSHNKKEELEDIGMRYLKELLSRFFFQDLS 457 (505)
Q Consensus 428 ~~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 457 (505)
.- .........++++.|...||+....
T Consensus 325 ~~---~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 325 GV---DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred CC---CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 1133466788999999999998754
No 8
>PF05729 NACHT: NACHT domain
Probab=99.16 E-value=3.3e-10 Score=100.02 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=86.7
Q ss_pred eEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEH----FELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
+++.|+|.+|+||||+++.++........ +...+|+........... ..+...+.... ........ .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~-----~~~~~~~~---~ 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQL-----PESIAPIE---E 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhh-----ccchhhhH---H
Confidence 47899999999999999999875333322 345667666554333221 22222222111 00000111 1
Q ss_pred HHHH-HcCCceEEEEEecCCCCCh--h-----hHHH-HHHhhcC-CCCCcEEEEecCChHHHHhhccCCCCCceeCCCCC
Q 037039 267 ILRD-CLNGKRYLLVMDDVWNEDP--E-----AWRN-LKSLLLG-GANGSKILVTTRSRKVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 267 ~l~~-~L~~kr~LlVlDdvw~~~~--~-----~~~~-l~~~l~~-~~~gs~iivTTR~~~va~~~~~~~~~~~~~l~~L~ 336 (505)
.+.. ....++++||||++++... . .+.. +...++. ..++++++||||................+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 1111 2257899999999975322 1 2333 3333443 36789999999988763332222222679999999
Q ss_pred hhhhHHHHHHh
Q 037039 337 FEDCLSLFMKF 347 (505)
Q Consensus 337 ~~~~~~Lf~~~ 347 (505)
+++..+++.++
T Consensus 152 ~~~~~~~~~~~ 162 (166)
T PF05729_consen 152 EEDIKQYLRKY 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=3.7e-09 Score=101.33 Aligned_cols=129 Identities=22% Similarity=0.266 Sum_probs=84.8
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
..++....+||++|+||||||+.+.. .....| ..++...+-.+-++++++.-
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a--------------------- 96 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA--------------------- 96 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH---------------------
Confidence 35677888999999999999999987 333333 44444444444444444432
Q ss_pred HHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE--ecCChHHHHhhccCCCCCceeCCCCChhhhHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV--TTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLF 344 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf 344 (505)
-.....+++.+|.+|.|+..+..+-+.| ||.-.+|.-|+| ||.|+...-.-.......++.+++|+.++-..++
T Consensus 97 -~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l 172 (436)
T COG2256 97 -RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLL 172 (436)
T ss_pred -HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHH
Confidence 1223348999999999987665554444 444556777777 6776643211111133478999999999999988
Q ss_pred HHh
Q 037039 345 MKF 347 (505)
Q Consensus 345 ~~~ 347 (505)
.+.
T Consensus 173 ~ra 175 (436)
T COG2256 173 KRA 175 (436)
T ss_pred HHH
Confidence 873
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.95 E-value=2.5e-08 Score=97.45 Aligned_cols=261 Identities=15% Similarity=0.109 Sum_probs=128.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+|+|++..++.|..++..... .......+.++|++|+|||+||+.+.+.. ...| ..+....... ...+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~-~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEK-PGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcC-chhHHHHH
Confidence 4699999999999888864221 12335568899999999999999998832 2221 1111111111 11112222
Q ss_pred HHHHHhhhhccccCCCCC--chHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 243 ELIIEQIMTNYVFQGDLN--THRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~--~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
..+.. .....-++.+ ..+..+.+...+.+.+..+|+++..+. ..+ ... ..+.+-|..||+...+...
T Consensus 77 ~~~~~---~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~---~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 77 TNLEE---GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLD---LPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred Hhccc---CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eec---CCCeEEEEecCCccccCHH
Confidence 22110 0000000000 011233344444555555555554321 111 111 1234556667776554443
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHHh-------------HHhhhhccCCCChHHHHHHHccccccc---cc---cC---
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMKF-------------RTLGSVLCGKTDKRDWEFVRDNEIWQL---EQ---ME--- 378 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~-------------~~ig~~L~~~~~~~~w~~~~~~~~~~~---~~---~~--- 378 (505)
+.... ...+.+++++.++..+++.+. ..++....+.+ ..-..+++.. +.. .. ..
T Consensus 146 l~sR~-~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p--R~~~~ll~~~-~~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 146 LRDRF-GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP--RIANRLLRRV-RDFAQVRGQKIINRDI 221 (305)
T ss_pred HHhhc-ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc--chHHHHHHHH-HHHHHHcCCCCcCHHH
Confidence 32211 145789999999999998865 11222211111 1001111110 000 00 00
Q ss_pred -CcchhHHHhhHhcccHHHHHHHH-HhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHH-HHHHcCCccc
Q 037039 379 -RGILPTLRLSYDQLSPHLKQCFA-YCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLK-ELLSRFFFQD 455 (505)
Q Consensus 379 -~~i~~~l~~sy~~L~~~~k~cfl-~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~sll~~ 455 (505)
......+...|..|+++.+..|. .++.++.+ .+....+.... | .....++..++ .|++++|+..
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCccc
Confidence 11223355678888888877666 55777643 44444443322 1 12234677788 6999999975
Q ss_pred ccc
Q 037039 456 LSF 458 (505)
Q Consensus 456 ~~~ 458 (505)
...
T Consensus 289 ~~~ 291 (305)
T TIGR00635 289 TPR 291 (305)
T ss_pred CCc
Confidence 443
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=1.6e-08 Score=99.52 Aligned_cols=262 Identities=16% Similarity=0.135 Sum_probs=127.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+|+|++..++.+..++..... .+.....+.|+|++|+||||||+.+++.. ...+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 7899999999999887754211 12345678899999999999999998843 2221 111111 111111122222
Q ss_pred HHHHHhhhhccccCCCCC--chHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 243 ELIIEQIMTNYVFQGDLN--THRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~--~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
..+.. .....-++.+ .....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..||+...+...
T Consensus 98 ~~l~~---~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 98 TNLEE---GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSP 166 (328)
T ss_pred Hhccc---CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHH
Confidence 21100 0000000000 0012222333333334444444332110 000001 224556667775544433
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHHh-------------HHhhhhccCCCChHHHHHHHcccc-ccccccC--------
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMKF-------------RTLGSVLCGKTDKRDWEFVRDNEI-WQLEQME-------- 378 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~-------------~~ig~~L~~~~~~~~w~~~~~~~~-~~~~~~~-------- 378 (505)
+.... ...+.+++++.++..+++... ..++..-.+ ++.....+++... +......
T Consensus 167 L~sRf-~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G--~pR~a~~~l~~~~~~a~~~~~~~I~~~~v 243 (328)
T PRK00080 167 LRDRF-GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG--TPRIANRLLRRVRDFAQVKGDGVITKEIA 243 (328)
T ss_pred HHHhc-CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 32211 145899999999999999866 112211111 1111111111100 0000000
Q ss_pred CcchhHHHhhHhcccHHHHHHHH-HhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHH-HHHHcCCcccc
Q 037039 379 RGILPTLRLSYDQLSPHLKQCFA-YCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLK-ELLSRFFFQDL 456 (505)
Q Consensus 379 ~~i~~~l~~sy~~L~~~~k~cfl-~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~sll~~~ 456 (505)
......+...+..|++..+..+. .+..|+.+ .+..+.+.... | ...+.+++.++ .|++.+|++..
T Consensus 244 ~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 244 DKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---------EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---------CCcchHHHHhhHHHHHcCCcccC
Confidence 12233455677888887777775 77778765 45555554332 1 12234566677 89999999865
Q ss_pred cc
Q 037039 457 SF 458 (505)
Q Consensus 457 ~~ 458 (505)
..
T Consensus 311 ~~ 312 (328)
T PRK00080 311 PR 312 (328)
T ss_pred Cc
Confidence 43
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.86 E-value=3.8e-09 Score=98.80 Aligned_cols=173 Identities=24% Similarity=0.291 Sum_probs=84.9
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH---
Q 037039 165 IIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI--- 241 (505)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i--- 241 (505)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+. .+..-...+|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 799999999999988643 2468889999999999999999883 3221113444444443322 222222
Q ss_pred -------HHHHHHhhhhccc----cCCCCCchHHHHHHHHHcC--CceEEEEEecCCCCC------hhhHHHHHHhhcC-
Q 037039 242 -------MELIIEQIMTNYV----FQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNED------PEAWRNLKSLLLG- 301 (505)
Q Consensus 242 -------l~~l~~~~~~~~~----~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~------~~~~~~l~~~l~~- 301 (505)
...+......... .............+.+.+. +++.+||+||+.... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1112111100000 0000111122222333332 345999999995432 2223344444443
Q ss_pred --CCCCcEEEEecCChHHHHh-hc----cCCCCCceeCCCCChhhhHHHHHHh
Q 037039 302 --GANGSKILVTTRSRKVASI-MG----TRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va~~-~~----~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+.+ +|+++....+... .. ..+....+.+++|+.+++++++...
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKEL 203 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHH
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHH
Confidence 33334 4555544444433 11 1122345999999999999999863
No 13
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=1.3e-07 Score=90.57 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=85.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
.+++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..+...++.. ....+...+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~-------~~~~~~~~~~~~l~ 112 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLE-------TEGRDKAALLRELE 112 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHH
Confidence 468899999999999999999985321 111 12233 233456667777776655221 11122222223332
Q ss_pred ----HH-cCCceEEEEEecCCCCChhhHHHHHHhhcC---CCCCcEEEEecCChHHHHhhccC-------CCCCceeCCC
Q 037039 270 ----DC-LNGKRYLLVMDDVWNEDPEAWRNLKSLLLG---GANGSKILVTTRSRKVASIMGTR-------GGTTGYNLQG 334 (505)
Q Consensus 270 ----~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTTR~~~va~~~~~~-------~~~~~~~l~~ 334 (505)
.. ..+++.+||+||+|..+...++.+...... ......|++|.... ....+... .....+.+.+
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 22 267889999999998777777776543321 12223455665433 22222110 0013578999
Q ss_pred CChhhhHHHHHHh
Q 037039 335 LPFEDCLSLFMKF 347 (505)
Q Consensus 335 L~~~~~~~Lf~~~ 347 (505)
|+.++..+++...
T Consensus 192 l~~~e~~~~l~~~ 204 (269)
T TIGR03015 192 LDREETREYIEHR 204 (269)
T ss_pred CCHHHHHHHHHHH
Confidence 9999998888764
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=98.79 E-value=4.7e-08 Score=90.93 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=74.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
.+.+.|+|++|+|||+|++.+++. .......+.|+++... ..... .+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------------~~~ 86 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------------AVL 86 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------------HHH
Confidence 357889999999999999999983 3333345566655310 00000 011
Q ss_pred HHcCCceEEEEEecCCCCC-hhhHHH-HHHhhcCC-CCCcEEEE-ecCC---------hHHHHhhccCCCCCceeCCCCC
Q 037039 270 DCLNGKRYLLVMDDVWNED-PEAWRN-LKSLLLGG-ANGSKILV-TTRS---------RKVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TTR~---------~~va~~~~~~~~~~~~~l~~L~ 336 (505)
+.+. +.-+|+|||+|... ...|+. +...+... ..|+.+|| |+.. +++.+.+... ..+++++++
T Consensus 87 ~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd 162 (229)
T PRK06893 87 ENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLT 162 (229)
T ss_pred hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCC
Confidence 1122 23489999998642 345653 44444332 23555554 5543 3566665543 678999999
Q ss_pred hhhhHHHHHHh
Q 037039 337 FEDCLSLFMKF 347 (505)
Q Consensus 337 ~~~~~~Lf~~~ 347 (505)
.++.++++.+.
T Consensus 163 ~e~~~~iL~~~ 173 (229)
T PRK06893 163 DEQKIIVLQRN 173 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.77 E-value=6.3e-08 Score=98.34 Aligned_cols=145 Identities=17% Similarity=0.238 Sum_probs=88.9
Q ss_pred CcccccchhHHH---HHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREK---IIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
.+++|++..+.. +.+++.. .....+.++|++|+||||||+.+++. .... |+.++........++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 678998877655 7777743 34557888999999999999999873 2222 233332222122222
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE--ecCChHH
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV--TTRSRKV 317 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v 317 (505)
.++.... .....+++.+|++|+++.......+.|...+.. |..++| ||.+...
T Consensus 79 ~ii~~~~----------------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~ 133 (413)
T PRK13342 79 EVIEEAR----------------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSF 133 (413)
T ss_pred HHHHHHH----------------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhh
Confidence 2222220 011245788999999987766666667666653 444444 4444321
Q ss_pred --HHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 318 --ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 318 --a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+. .....+.+.+++.++...++.+.
T Consensus 134 ~l~~aL~--SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 134 EVNPALL--SRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hccHHHh--ccceeeEeCCCCHHHHHHHHHHH
Confidence 11121 22367899999999999998864
No 16
>PF13173 AAA_14: AAA domain
Probab=98.72 E-value=5.8e-08 Score=81.64 Aligned_cols=122 Identities=18% Similarity=0.263 Sum_probs=77.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
+++.|.|+.|+|||||+++++.+.. ....+++++..+.........+ +.+.+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------------~~~~~~~ 56 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------------LLEYFLE 56 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------------hHHHHHH
Confidence 6899999999999999999987432 2245666665443221100000 1222333
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh---ccCCCCCceeCCCCChhhh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM---GTRGGTTGYNLQGLPFEDC 340 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~---~~~~~~~~~~l~~L~~~~~ 340 (505)
....++.+|+||++... ..|......+.+..+..+|++|+.+......- ...+....+++.||+..|.
T Consensus 57 ~~~~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 57 LIKPGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhccCCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 33447888999999544 56777666666655678999999887665331 1123335689999988763
No 17
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.72 E-value=3.8e-08 Score=83.12 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=76.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcccccc---ccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVK---EHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
.+++.|+|.+|+|||++++.+.+..... ..-..++|+.+....+...+...++..+.... ....+..++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL------KSRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS------SSTS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc------cccCCHHHHHH
Confidence 4688999999999999999998742110 00345679998888889999999999885421 11223444667
Q ss_pred HHHHHcCCc-eEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcEEEEecCC
Q 037039 267 ILRDCLNGK-RYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSKILVTTRS 314 (505)
Q Consensus 267 ~l~~~L~~k-r~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 314 (505)
.+.+.+... ..+||+|++... ..+.++.|..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776544 469999999654 5555555654444 566777776654
No 18
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.71 E-value=9.9e-08 Score=90.07 Aligned_cols=132 Identities=17% Similarity=0.278 Sum_probs=89.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
..++.+.+||++|+||||||+.+.+...... ..||..|....-..-.++|.++-..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------------- 215 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------------- 215 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH--------------------
Confidence 5678888999999999999999998433222 5678877766555666666665411
Q ss_pred HHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE--ecCChHHHHhhccCCCCCceeCCCCChhhhHHHHH
Q 037039 268 LRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV--TTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFM 345 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~ 345 (505)
...+.++|.+|.+|.|...+..+- -.+||.-.+|+-++| ||.|+...-.........++.|+.|+.++-..++.
T Consensus 216 -~~~l~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 216 -EKSLTKRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred -HHhhhcceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 123457899999999975433222 345677778887776 77776432221111334789999999999888877
Q ss_pred Hh
Q 037039 346 KF 347 (505)
Q Consensus 346 ~~ 347 (505)
..
T Consensus 292 ra 293 (554)
T KOG2028|consen 292 RA 293 (554)
T ss_pred HH
Confidence 63
No 19
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.71 E-value=3.3e-08 Score=88.92 Aligned_cols=47 Identities=23% Similarity=0.450 Sum_probs=32.2
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 164 DIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.|+||+++++++...|.... ....+.+.|+|++|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999995221 455689999999999999999999884
No 20
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.69 E-value=2.3e-07 Score=79.67 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=72.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHH
Q 037039 166 IGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELI 245 (505)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 245 (505)
+|++..++.+...+... ..+.+.|+|++|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47788888888887542 346788999999999999999998432 222345565544332221111100000
Q ss_pred HHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC------CCCcEEEEecCChH
Q 037039 246 IEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG------ANGSKILVTTRSRK 316 (505)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTTR~~~ 316 (505)
............++.+||+||++.........+...+... ..+..+|+||....
T Consensus 72 -----------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999754233333444444432 35788888887654
No 21
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=5.8e-07 Score=94.87 Aligned_cols=291 Identities=12% Similarity=0.050 Sum_probs=150.4
Q ss_pred CCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc---cccCC--ceEEEEecCCCC
Q 037039 159 PNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV---KEHFE--LKIWIRVFEDFG 233 (505)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~v~~~~~ 233 (505)
.++|..+.||++++++|...|...-.+ .....++.|+|++|.|||++++.|.+.... ....+ .+++|+...-.+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 456788999999999999988653221 123367789999999999999999874211 11122 346777766667
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC---CceEEEEEecCCCCChhhHHHHHHhhcC-CCCCcEEE
Q 037039 234 ERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN---GKRYLLVMDDVWNEDPEAWRNLKSLLLG-GANGSKIL 309 (505)
Q Consensus 234 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~---~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~ii 309 (505)
...++..|.++|.... ........+....+...+. ....+||||++.......-+.|...+.. ...+++|+
T Consensus 830 p~sIYqvI~qqL~g~~-----P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKK-----PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred HHHHHHHHHHHHcCCC-----CCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 7888888887773211 1122233344445554442 2346999999964321111223222221 12455555
Q ss_pred E--ecCChH----HHHhhccCCCCCceeCCCCChhhhHHHHHHhHHh-------------hhhccC-CCChHHHHHHHcc
Q 037039 310 V--TTRSRK----VASIMGTRGGTTGYNLQGLPFEDCLSLFMKFRTL-------------GSVLCG-KTDKRDWEFVRDN 369 (505)
Q Consensus 310 v--TTR~~~----va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~i-------------g~~L~~-~~~~~~w~~~~~~ 369 (505)
| +|...+ +...+...-....+...|.+.++-.+++...... |...+. ..+...-..++..
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 4 332221 1112222111134677999999988888776221 111100 0111111111111
Q ss_pred cccccccc----CCcchhH--------HHhhHhcccHHHHHHHHHhccC-C--CCCccchhhHHHHH--HhccCcccCCC
Q 037039 370 EIWQLEQM----ERGILPT--------LRLSYDQLSPHLKQCFAYCSIF-P--RDYQFYGDSLVQFW--MAHGLLQSHNK 432 (505)
Q Consensus 370 ~~~~~~~~----~~~i~~~--------l~~sy~~L~~~~k~cfl~ls~f-p--~~~~i~~~~Li~~W--iaeg~i~~~~~ 432 (505)
... .... ...+..+ +.-....||.|.|..++.+... - ....++...+.... +++..-...+.
T Consensus 985 AgE-ikegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv 1063 (1164)
T PTZ00112 985 AFE-NKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM 1063 (1164)
T ss_pred HHh-hcCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC
Confidence 100 0000 0112222 2335567899987766644332 1 12246555555443 33310000011
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccc
Q 037039 433 KEELEDIGMRYLKELLSRFFFQDLS 457 (505)
Q Consensus 433 ~~~~e~~~~~~l~~L~~~sll~~~~ 457 (505)
....+ ...+|+.+|...|+|...+
T Consensus 1064 ~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1064 CSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred CCcHH-HHHHHHHHHHhcCeEEecC
Confidence 11223 7788999999999987644
No 22
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.62 E-value=2.7e-07 Score=97.81 Aligned_cols=177 Identities=19% Similarity=0.294 Sum_probs=109.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEecCC---CCHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF---ELKIWIRVFED---FGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~ 236 (505)
+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 6789999999998887743 334578999999999999999998754332322 22345555321 22222
Q ss_pred HHHHHHHHH-----------HHh-------------hhhccccCCCCC--chHHHHHHHHHcCCceEEEEEecCCCCChh
Q 037039 237 IMRKIMELI-----------IEQ-------------IMTNYVFQGDLN--THRLQQILRDCLNGKRYLLVMDDVWNEDPE 290 (505)
Q Consensus 237 ~~~~il~~l-----------~~~-------------~~~~~~~~~~~~--~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~ 290 (505)
+...++... ... ...+...-+..+ +...+..|.+.+.+++++++.|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 211111100 000 000000011122 223788899999999999998888877777
Q ss_pred hHHHHHHhhcCCCCCcEEEE--ecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 291 AWRNLKSLLLGGANGSKILV--TTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 291 ~~~~l~~~l~~~~~gs~iiv--TTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.|..+...+....+...+++ ||++.. +...+.. ....+.+.+++.++.+.++.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~ 365 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNA 365 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHH
Confidence 88888887777666665666 566443 2222221 2246788999999999999874
No 23
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=4.9e-06 Score=86.30 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=94.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.++||.+..++.|.+.+..+ .-...+.++|..|+||||+|+.+.+.......-...- + .+..+.....-..|.
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 67999999999999999753 2345678999999999999999876321100000000 0 000111111111110
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecCChHH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDC----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTRSRKV 317 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v 317 (505)
..-..... ...........++.+.+... ..++.-++|+|+++..+...++.|+..+..-..++++|+ ||....+
T Consensus 89 aG~hpDvi-EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYI-EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcce-EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00000000 00000000111111111111 235667999999988888888999888877555666555 5544555
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+.+. ...+.+..++.++..+.+.+
T Consensus 168 lpTIrSR--Cq~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 168 PVTVLSR--CLQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred hhHHHHH--HHhcccCCCChHHHHHHHHH
Confidence 4333322 26789999999988877764
No 24
>PTZ00202 tuzin; Provisional
Probab=98.56 E-value=3e-06 Score=83.20 Aligned_cols=171 Identities=11% Similarity=0.138 Sum_probs=104.0
Q ss_pred CCCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 157 TQPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
..|..+..|+||+.++..|...|.... ....+++.|.|++|+|||||++.+..... + ..++.... +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHH
Confidence 345666899999999999999986543 23356999999999999999999986322 2 23333333 6788
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc-----C-CceEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcEEE
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL-----N-GKRYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSKIL 309 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~ii 309 (505)
++..++.+|+. .......++...|.+.+ . +++.+||+-=-.-. -...+++.. .|.....-|.|+
T Consensus 325 lLr~LL~ALGV--------~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v 395 (550)
T PTZ00202 325 TLRSVVKALGV--------PNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVV 395 (550)
T ss_pred HHHHHHHHcCC--------CCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheee
Confidence 89999988842 11122233444444333 2 66667776432111 112222222 233344567788
Q ss_pred EecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 310 VTTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 vTTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+---.+.+--..-.-+....|.+.+++.++|...-...
T Consensus 396 ~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 396 IEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred eeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 76554443322222244456889999999988776654
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.1e-06 Score=92.13 Aligned_cols=167 Identities=14% Similarity=0.215 Sum_probs=96.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+++..+ .-...+.++|..|+||||+|+.+.+.......++ +..+........|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 67999999999999998643 2245667999999999999998876321111110 01111111111111
Q ss_pred HHHHHhhhhccccC---CCCCchHHHHHHHH----HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 243 ELIIEQIMTNYVFQ---GDLNTHRLQQILRD----CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 243 ~~l~~~~~~~~~~~---~~~~~~~l~~~l~~----~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
..-. .+.... ......++.+.+.. -..++.-++|||+++..+...|+.|+..+.......++|+||.+.
T Consensus 84 ~G~h----~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 84 EGRF----VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred cCCC----ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 1000 000000 00001111111111 113455689999998888888999998887766677877777664
Q ss_pred H-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 316 K-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 316 ~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
. +...+. .....+.+..++.++..+.+.+.
T Consensus 160 ~KIp~TIr--SRCq~f~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 160 QKIPVTVL--SRCLQFNLKQMPAGHIVSHLERI 190 (830)
T ss_pred hhccchhh--hheEEEecCCcCHHHHHHHHHHH
Confidence 3 322222 22367999999999988887654
No 26
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.53 E-value=1e-06 Score=94.32 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=84.9
Q ss_pred CcccccchhHH---HHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDRE---KIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
.+++|.+..+. .+.+.+.. .+...+.++|++|+||||||+.+++ ....+| +.+........-.+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f-----~~lna~~~~i~dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHF-----SSLNAVLAGVKDLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcc-----eeehhhhhhhHHHH
Confidence 67899888774 45555542 3455678999999999999999997 333344 11111000000011
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHc--CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE--ecCCh
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL--NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV--TTRSR 315 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~ 315 (505)
+++. .....+ .+++.+|+|||++......++.|...+.. |+.++| ||.+.
T Consensus 95 ~~i~-----------------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp 148 (725)
T PRK13341 95 AEVD-----------------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENP 148 (725)
T ss_pred HHHH-----------------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCCh
Confidence 1111 111111 24677999999987666667667655543 555555 34443
Q ss_pred H--HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 316 K--VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 316 ~--va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
. +...+.+ ....+.+++|+.++...++...
T Consensus 149 ~~~l~~aL~S--R~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 149 YFEVNKALVS--RSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred HhhhhhHhhc--cccceecCCCCHHHHHHHHHHH
Confidence 2 2222222 1257899999999988888764
No 27
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=4.2e-06 Score=91.87 Aligned_cols=299 Identities=15% Similarity=0.168 Sum_probs=159.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccccc---CCceEEEEecCCC---CHHHH
Q 037039 164 DIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH---FELKIWIRVFEDF---GERQI 237 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~wv~v~~~~---~~~~~ 237 (505)
.++||+.+++.|...+.... ...-.++.+.|.+|||||+|+++|... +.+. |-...+-....+. ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 37899999999999997765 344569999999999999999999873 3322 1111111111111 11234
Q ss_pred HHHHHHHHHHhh---------------hhcc------------ccC--C---CCCch---H-----HHHHHHHHc-CCce
Q 037039 238 MRKIMELIIEQI---------------MTNY------------VFQ--G---DLNTH---R-----LQQILRDCL-NGKR 276 (505)
Q Consensus 238 ~~~il~~l~~~~---------------~~~~------------~~~--~---~~~~~---~-----l~~~l~~~L-~~kr 276 (505)
+++++.++.... +.+. ..+ . ..... . ....+.... +.|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 444444441110 0000 000 0 00000 0 222333333 3569
Q ss_pred EEEEEecCCCCChhhHHHHHHhhcCCCC----CcEEEEecCChHH-HHhhccCCCCCceeCCCCChhhhHHHHHHh----
Q 037039 277 YLLVMDDVWNEDPEAWRNLKSLLLGGAN----GSKILVTTRSRKV-ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF---- 347 (505)
Q Consensus 277 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~----gs~iivTTR~~~v-a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~---- 347 (505)
.++|+||+...|....+-|......... -+.|..+...... ............+.|.||+..+...|....
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999977766666555544443321 1223333322222 222223333467999999999998887654
Q ss_pred --------HHhhhhccCCC-ChH-HHHHHHcc---------cccccc-------ccCCcchhHHHhhHhcccHHHHHHHH
Q 037039 348 --------RTLGSVLCGKT-DKR-DWEFVRDN---------EIWQLE-------QMERGILPTLRLSYDQLSPHLKQCFA 401 (505)
Q Consensus 348 --------~~ig~~L~~~~-~~~-~w~~~~~~---------~~~~~~-------~~~~~i~~~l~~sy~~L~~~~k~cfl 401 (505)
..+-....+++ -.. .-+.+.+. ..|..+ ....++...+..-.+.||...+..+-
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111111122 111 11112221 111111 01112344577889999999999999
Q ss_pred HhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCCceeE---EEeChhHHHHH
Q 037039 402 YCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLKELLSRFFFQDLSFGMLGMETFS---FKMHDLMHDLA 478 (505)
Q Consensus 402 ~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~---~~mHdlv~~~a 478 (505)
..|++-.. |+.+.|...|- +.....+....+.|....++-..+....+..... -..||.+++.|
T Consensus 316 ~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaa 382 (849)
T COG3899 316 AAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAA 382 (849)
T ss_pred HHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHH
Confidence 99999755 55677776651 1455667777777777666653332222211222 25688888877
Q ss_pred HH
Q 037039 479 QQ 480 (505)
Q Consensus 479 ~~ 480 (505)
-.
T Consensus 383 Y~ 384 (849)
T COG3899 383 YN 384 (849)
T ss_pred hc
Confidence 44
No 28
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.4e-06 Score=90.37 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=97.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH-------------------FELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 223 (505)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++....... |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 67999999999999988643 22345689999999999999999874211111 1111
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
+++.......+ +.+++++..+ ......+++-++|||++........+.|+..+-...
T Consensus 91 iEidAas~~kV-DdIReLie~v----------------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP 147 (944)
T PRK14949 91 IEVDAASRTKV-DDTRELLDNV----------------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP 147 (944)
T ss_pred EEeccccccCH-HHHHHHHHHH----------------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC
Confidence 22211100111 1112222211 001124677799999998888888999998888766
Q ss_pred CCcEEEEecC-ChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 304 NGSKILVTTR-SRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 304 ~gs~iivTTR-~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...++|++|. ...+...+.. +...+.+.+|+.++....+...
T Consensus 148 ~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 148 EHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred CCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHH
Confidence 6666666554 4444433222 2367999999999988887763
No 29
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.6e-06 Score=85.62 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=115.8
Q ss_pred CCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEecCCCCHH
Q 037039 158 QPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE--LKIWIRVFEDFGER 235 (505)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~ 235 (505)
.++.|..+.+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.|.. ++..... ..++|++-...++.
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHH
Confidence 345666799999999999998865432 22233488999999999999999998 4444332 26899999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC--CceEEEEEecCCCCChhhHHHHHHhhcCCCC-CcEEE--E
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNEDPEAWRNLKSLLLGGAN-GSKIL--V 310 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~ii--v 310 (505)
+++..|+.+++. ....+....+..+.+.+.+. ++.+++|||++.......-+.|...+..... .++|+ .
T Consensus 88 ~i~~~i~~~~~~------~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~ 161 (366)
T COG1474 88 QVLSKILNKLGK------VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIA 161 (366)
T ss_pred HHHHHHHHHcCC------CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEE
Confidence 999999998851 12334555666677777764 5789999999964321111333333332222 34433 3
Q ss_pred ecCChHHHHhhcc----CCCCCceeCCCCChhhhHHHHHHh
Q 037039 311 TTRSRKVASIMGT----RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 311 TTR~~~va~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+-+......+.. .-+...+...|-+.++-...+...
T Consensus 162 i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R 202 (366)
T COG1474 162 VSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRER 202 (366)
T ss_pred EeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHH
Confidence 3443333322221 111133677888888888777766
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.6e-06 Score=83.93 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=94.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.+.+.+..+ .-...+.++|+.|+||||+|+.+.+.......+. ..++.....-.++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 67999999999999988643 2345678999999999999999986321111000 00111001111111
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-H
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-K 316 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~ 316 (505)
.........- ........+....+.+.+ .+++-++|+|++.......++.+...+......+++|++|.+. .
T Consensus 84 ~~~~~d~~~~--~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 84 KGLCLDLIEI--DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred cCCCCceEEe--cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1000000000 000000011111111111 2455699999998777677888888887766677777766543 3
Q ss_pred HHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 317 VASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 317 va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+...+.. ....+++.+++.++..+.+..
T Consensus 162 l~~tI~S--Rc~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 162 IPKTILS--RCLQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred hhHHHHh--hceEEeCCCCCHHHHHHHHHH
Confidence 3333222 236789999999998877665
No 31
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=3.2e-06 Score=82.71 Aligned_cols=154 Identities=16% Similarity=0.235 Sum_probs=101.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccc----cccccCCceEEEEe-cCCCCHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQ----RVKEHFELKIWIRV-FEDFGERQI 237 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~v-~~~~~~~~~ 237 (505)
.+++|.+..++.+.+.+..+ .-.....++|+.|+||||+|+.++... ....|.|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 46789889899999988643 334677899999999999999888631 12345555555432 22223222
Q ss_pred HHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHH
Q 037039 238 MRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKV 317 (505)
Q Consensus 238 ~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v 317 (505)
.+++.+.+.. .-..+++-++|+|++...+...++.|...+....+++.+|++|.+.+.
T Consensus 78 ir~~~~~~~~----------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ 135 (313)
T PRK05564 78 IRNIIEEVNK----------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ 135 (313)
T ss_pred HHHHHHHHhc----------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 2233332210 011245667778888766778999999999988889999988876542
Q ss_pred H-HhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 318 A-SIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 318 a-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
. ..+.+ ....+.+.+++.++....+.+
T Consensus 136 ll~TI~S--Rc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 136 ILDTIKS--RCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred CcHHHHh--hceeeeCCCcCHHHHHHHHHH
Confidence 2 22222 236789999999998776654
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.45 E-value=1.9e-06 Score=85.41 Aligned_cols=170 Identities=12% Similarity=0.174 Sum_probs=91.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHH-HHHH-
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGER-QIMR- 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~-~~~~- 239 (505)
.+++|++..++.+..++.. ...+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++-.+.. ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 6789999999999988863 2334678999999999999999887321 11122 22344433211000 0000
Q ss_pred --HHHHHHHHhhhhccccCCCCCchHHH-HHHHHH---c--CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEe
Q 037039 240 --KIMELIIEQIMTNYVFQGDLNTHRLQ-QILRDC---L--NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVT 311 (505)
Q Consensus 240 --~il~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~---L--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 311 (505)
.....+.. . ........+.. ..+... . .+.+-+||+||+..........|...+......+++|+|
T Consensus 88 ~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 161 (337)
T PRK12402 88 DPRFAHFLGT----D--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA 161 (337)
T ss_pred Ccchhhhhhh----h--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 00000000 0 00000111111 111111 1 234558999999766555566677766655556778887
Q ss_pred cCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 312 TRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 312 TR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
|.+. .+...+.. ....+.+.+++.++...++...
T Consensus 162 ~~~~~~~~~~L~s--r~~~v~~~~~~~~~~~~~l~~~ 196 (337)
T PRK12402 162 TRQPSKLIPPIRS--RCLPLFFRAPTDDELVDVLESI 196 (337)
T ss_pred eCChhhCchhhcC--CceEEEecCCCHHHHHHHHHHH
Confidence 7543 22222222 2256788899988877776653
No 33
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.3e-06 Score=86.57 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=95.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccc-------------------ccCCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVK-------------------EHFELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 223 (505)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 67999999999999988643 234567899999999999999987621100 012222
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
+++.........+ .++++.. +.. -..+++-++|+|++.......++.|...+...
T Consensus 91 ieidaas~~gvd~-ir~ii~~-----------------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep 146 (546)
T PRK14957 91 IEIDAASRTGVEE-TKEILDN-----------------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP 146 (546)
T ss_pred EEeecccccCHHH-HHHHHHH-----------------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC
Confidence 2322211111111 1122221 111 12356679999999877778888999988876
Q ss_pred CCCcEEEE-ecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 303 ANGSKILV-TTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 303 ~~gs~iiv-TTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+.+|+ ||....+...+.. ....+++.+++.++....+..
T Consensus 147 p~~v~fIL~Ttd~~kil~tI~S--Rc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 147 PEYVKFILATTDYHKIPVTILS--RCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred CCCceEEEEECChhhhhhhHHH--heeeEEeCCCCHHHHHHHHHH
Confidence 66666664 5544444423222 236789999999987766654
No 34
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4.6e-07 Score=84.61 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC--CCHHHHHHHHHHHHHHhhhhccccCCCC-CchH---
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED--FGERQIMRKIMELIIEQIMTNYVFQGDL-NTHR--- 263 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~-~~~~--- 263 (505)
-..++|+|++|+|||||++.++++.... +|+.++|+.+.+. ++..+++..+...+... ..+.+. ....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~-----~~~~~~~~~~~~~~ 89 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIAS-----TFDEPPERHVQVAE 89 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEe-----cCCCCHHHHHHHHH
Confidence 3578899999999999999999965444 8999999998776 78888888873322110 011110 0011
Q ss_pred -HHHHHHHH-cCCceEEEEEecCC
Q 037039 264 -LQQILRDC-LNGKRYLLVMDDVW 285 (505)
Q Consensus 264 -l~~~l~~~-L~~kr~LlVlDdvw 285 (505)
........ -.+++.+|++|++.
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHH
Confidence 12222222 25899999999994
No 35
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=1.4e-06 Score=81.05 Aligned_cols=137 Identities=17% Similarity=0.186 Sum_probs=77.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHH
Q 037039 168 RDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIE 247 (505)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 247 (505)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++. ........++++++.-. ... ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~~-~~--- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QAD-PE--- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------HhH-HH---
Confidence 34456666666542 33467889999999999999999873 22233344555433211 000 00
Q ss_pred hhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChh-hH-HHHHHhhcC-CCCCcEEEEecCChH--------
Q 037039 248 QIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPE-AW-RNLKSLLLG-GANGSKILVTTRSRK-------- 316 (505)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTTR~~~-------- 316 (505)
+...+.+ .-+|||||+...... .| +.+...+.. ...+..+|+||+...
T Consensus 84 --------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 84 --------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred --------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 1111222 238999999754322 23 345544432 123457888887532
Q ss_pred -HHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 317 -VASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 317 -va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+...+.. ...+.+.+++.++...++..
T Consensus 143 ~L~~r~~~---~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 143 DLRTRLAW---GLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred HHHHHHhc---CeeEecCCCCHHHHHHHHHH
Confidence 2222211 15689999999888877754
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.5e-06 Score=86.12 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=95.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+.+..... .++. ...+.....-..+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~-~~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVT-STPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCC-CCCCccCHHHHHHh
Confidence 68999999999999999743 224677899999999999999887632110 0110 01111111111111
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHH----HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRD----CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KV 317 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v 317 (505)
..-...+..-. ........+..+.+.. -..++.-++|+|++...+....+.|...+.....+.++|++|.+. .+
T Consensus 83 ~g~hpDviEID-AAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEID-AASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEec-ccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 00000000000 0000001111111111 123566789999998877788888888888766677777777553 33
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+. .....+.+.+++.++....+...
T Consensus 162 p~TIl--SRCq~feFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 162 PITVI--SRCLQFTLRPLAVDEITKHLGAI 189 (702)
T ss_pred hHHHH--HhhheeeccCCCHHHHHHHHHHH
Confidence 22211 22367899999999887777643
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=4.3e-06 Score=82.03 Aligned_cols=155 Identities=14% Similarity=0.247 Sum_probs=91.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
.+++|.+..++.|..++.. .+.+.+.++|++|+||||+|+.+++.. ....|. ..+-++.++..+. +..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHH
Confidence 6789999888888877753 233457799999999999999988732 112232 1222222222222 122333
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHh
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASI 320 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~ 320 (505)
++.+... ... .-.++.-+++||++..........|...+......+++|+++... .+...
T Consensus 85 i~~~~~~-------~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 85 IKMFAQK-------KVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHHHhc-------ccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchh
Confidence 3222110 000 002456799999998776666667777775545567777766442 22222
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHH
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+.+. ...+++.+++.++....+..
T Consensus 146 L~SR--c~~i~f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 146 IQSR--CAIVRFSRLSDQEILGRLMK 169 (319)
T ss_pred HHHh--hhcccCCCCCHHHHHHHHHH
Confidence 2221 25689999999888777654
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=7.7e-06 Score=84.14 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=97.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCc-eEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFEL-KIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 241 (505)
.+++|.+..+..|...+..+ .-...+.++|+.|+||||+|+.+++.......... -.+. .+.....-..+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHH
Confidence 67899999999988877643 23467889999999999999999873211110000 0000 00000000011
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHH----HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecCChH
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRD----CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTRSRK 316 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~ 316 (505)
.......... ..........++...+.. -+.+++-++|+|+++......++.|...+....+.+.+|+ ||+...
T Consensus 92 ~~~~h~Dv~e-idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 92 NNHNHPDIIE-IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred hcCCCCcEEE-eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 0000000000 000000111112221111 1235677899999998777889999988887666666654 555555
Q ss_pred HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 317 VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 317 va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+...+... ...+.+.+++.++....+...
T Consensus 171 I~~tI~SR--c~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 171 IPATIISR--CQRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred hhHHHHhc--ceEEEccCCCHHHHHHHHHHH
Confidence 55444332 256899999999988888755
No 39
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.3e-06 Score=85.62 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=96.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+++... .-...+.++|++|+||||+|+.+++.......+...+|.|.+. ..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~ 80 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVR 80 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHh
Confidence 67899999999998888643 2235678999999999999999887432222222222322110 0000
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHH-----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecC-ChH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDC-----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTR-SRK 316 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~ 316 (505)
........ .. ........+....+.+. ..+++-++|+|+++......++.|...+......+.+|++|. ...
T Consensus 81 ~~~h~dv~-el-~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 81 RGAHPDVL-EI-DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred cCCCCceE-Ee-cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 00000000 00 00000011111112221 234566899999987777788889888877655556555554 344
Q ss_pred HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 317 VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 317 va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+...+.. ....+.+.+++.++....+...
T Consensus 159 l~~~I~S--Rc~~~~f~~ls~~el~~~L~~i 187 (504)
T PRK14963 159 MPPTILS--RTQHFRFRRLTEEEIAGKLRRL 187 (504)
T ss_pred CChHHhc--ceEEEEecCCCHHHHHHHHHHH
Confidence 4333322 2367999999999998888764
No 40
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=7.4e-06 Score=76.39 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=71.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
..+.|+|.+|+|||+|++.+++. .......+.|+++.+ ....+. ..+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------------~~~~- 89 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------------DALE- 89 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------------HHHH-
Confidence 45999999999999999999873 333333556665322 111110 1111
Q ss_pred HcCCceEEEEEecCCCCC-hhhHHH-HHHhhcC-CCCCcEEEEecCCh---------HHHHhhccCCCCCceeCCCCChh
Q 037039 271 CLNGKRYLLVMDDVWNED-PEAWRN-LKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGYNLQGLPFE 338 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ 338 (505)
.+ .+.-+||+||+.... ...|.. +...+.. ...|..||+||+.. ++.+.+... ..+.+++++.+
T Consensus 90 ~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~---~~~~l~~~~~e 165 (233)
T PRK08727 90 AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC---IRIGLPVLDDV 165 (233)
T ss_pred HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC---ceEEecCCCHH
Confidence 11 123489999996331 123432 3333322 12456799999743 233333332 67899999999
Q ss_pred hhHHHHHHh
Q 037039 339 DCLSLFMKF 347 (505)
Q Consensus 339 ~~~~Lf~~~ 347 (505)
+-..++.+.
T Consensus 166 ~~~~iL~~~ 174 (233)
T PRK08727 166 ARAAVLRER 174 (233)
T ss_pred HHHHHHHHH
Confidence 998888763
No 41
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.32 E-value=3.1e-07 Score=89.49 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=41.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCC--CHHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDF--GERQIMRKIM 242 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~il 242 (505)
+-..|+|++|+||||||+.||++.... +|+.++||.+.+.. ...+++..+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 467899999999999999999965444 89999999999886 5556666654
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.30 E-value=7e-06 Score=73.96 Aligned_cols=149 Identities=20% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
-.+|+|.+.-+..+.-++.... ..++.+..+.+||++|+||||||..+.+ .....|. +.+.. ...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~-------- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIE-------- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C----------
T ss_pred HHHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhh--------
Confidence 3789999998888765554221 1135678889999999999999999998 4444442 22111 101
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC--------CCCc-------
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG--------ANGS------- 306 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs------- 306 (505)
...++...+.. ++ ++-+|.+|.++......-+.|..++.++ ++++
T Consensus 88 ------------------k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 ------------------KAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp ------------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred ------------------hHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 11223332222 22 3457777999877666656666665542 1111
Q ss_pred ----EEEEecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 307 ----KILVTTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 307 ----~iivTTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
-|=-|||...+...+...-+ ...+++..+.+|-..+...
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFg-i~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFG-IVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSS-EEEE----THHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcc-eecchhcCCHHHHHHHHHH
Confidence 23347887665554443211 2346888888877776654
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.2e-05 Score=82.41 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=89.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH-------------------FELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 223 (505)
.+++|.+.....|...+..+ .-...+.++|++|+||||+|+.+.+....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 67999998888888877643 22356789999999999999999763211100 0011
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
..+..+....... .+++.... .. -..+++-++|+|+++.......+.|...+...
T Consensus 89 ~el~aa~~~gid~-iR~i~~~~-----------------------~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p 144 (472)
T PRK14962 89 IELDAASNRGIDE-IRKIRDAV-----------------------GYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP 144 (472)
T ss_pred EEEeCcccCCHHH-HHHHHHHH-----------------------hhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC
Confidence 1222211111111 11111111 10 12346679999999766556677777777664
Q ss_pred CCCcEEEEecCC-hHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 303 ANGSKILVTTRS-RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 303 ~~gs~iivTTR~-~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+.+|++|.+ ..+...+... ...+.+.+++.++....+...
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR--~~vv~f~~l~~~el~~~L~~i 188 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISR--CQVIEFRNISDELIIKRLQEV 188 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcC--cEEEEECCccHHHHHHHHHHH
Confidence 444555444433 4444443332 367889999999877766653
No 44
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.4e-05 Score=84.18 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=96.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.++||.+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......+ ...++.....-..|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 68999999999999988643 223456899999999999999987632111000 001111111111111
Q ss_pred HHHHHhhhhccc-cC-C-CCCchH---HHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-CC
Q 037039 243 ELIIEQIMTNYV-FQ-G-DLNTHR---LQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT-RS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~-~~-~-~~~~~~---l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~ 314 (505)
.. ...+.. .. . .....+ +.+.+.. -..+++-++|+|+++.......+.|+..+-.....+++|++| ..
T Consensus 84 ~g----~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 84 QG----RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred cC----CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 10 000000 00 0 001111 1111111 124567799999998888888999999888766666665554 44
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+...+.+ +...+.+.+|+.++....+...
T Consensus 160 ~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 160 QKLPVTILS--RCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred cccchHHHh--hheEeeCCCCCHHHHHHHHHHH
Confidence 444433222 2367999999999988777653
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.29 E-value=6.7e-06 Score=85.28 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=90.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.+.+|+..... ....+.+.|+|++|+||||+|+.+++.. .|+ .+-++.++..+ ...+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~-~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRT-ADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEccccccc-HHHHHHHH
Confidence 6799999999999999865321 1226789999999999999999998843 122 22334443222 22222222
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCCh----hhHHHHHHhhcCCCCCcEEEEecCCh-HH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDP----EAWRNLKSLLLGGANGSKILVTTRSR-KV 317 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTTR~~-~v 317 (505)
..... .. .....++-+||||+++.... ..+..|...+.. .++.||+|+.+. ..
T Consensus 86 ~~~~~--------~~------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~ 143 (482)
T PRK04195 86 GEAAT--------SG------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDP 143 (482)
T ss_pred HHhhc--------cC------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCcccc
Confidence 22210 00 01113678999999975422 345666666653 234466666432 11
Q ss_pred HH-hhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 318 AS-IMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 318 a~-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.. .+. .....+.+.+++.++....+...
T Consensus 144 ~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i 172 (482)
T PRK04195 144 SLRELR--NACLMIEFKRLSTRSIVPVLKRI 172 (482)
T ss_pred chhhHh--ccceEEEecCCCHHHHHHHHHHH
Confidence 11 111 12256889999988877776654
No 46
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.28 E-value=5.8e-06 Score=82.71 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=87.2
Q ss_pred CcccccchhHHHHHHHHhcCCCC-------CCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG-------KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|++..+++|.+.+...-.. +-..++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----H
Confidence 67999999999999877432110 0123456889999999999999999983 33333 22211 1
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------ChhhHHHHHHhh---cC
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPEAWRNLKSLL---LG 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l---~~ 301 (505)
.+ ..... +. ....+...+...-...+.+|+||+++.. +.+....+...+ ..
T Consensus 191 ~l----~~~~~---------g~--~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 191 EL----VRKYI---------GE--GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred HH----HHHhh---------hH--HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 11 11110 00 0001122222222346789999998632 112222233332 21
Q ss_pred --CCCCcEEEEecCChHHH-Hhhcc-CCCCCceeCCCCChhhhHHHHHHh
Q 037039 302 --GANGSKILVTTRSRKVA-SIMGT-RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va-~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+..||.||...... ..+.. ..-...+.+...+.++..++|..+
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHH
Confidence 13466788888754322 11111 001256888999999999998753
No 47
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.3e-05 Score=81.07 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=94.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..+..|..++... .-...+.++|+.|+||||+|+.+.+..... +.... ..+.....-..+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~~------~pCg~C~sC~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIGN------EPCNECTSCLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccCc------cccCCCcHHHHHH
Confidence 67999999999999988643 223467899999999999999998732111 00000 0000000011111
Q ss_pred HHHHHhhhh-ccccCCCCCc-hHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecCChHHH
Q 037039 243 ELIIEQIMT-NYVFQGDLNT-HRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTRSRKVA 318 (505)
Q Consensus 243 ~~l~~~~~~-~~~~~~~~~~-~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~va 318 (505)
......... +.....+.+. .++.+.+.. ...++.-++|+|++.......++.|...+........+|+ ||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 110000000 0000000000 012222221 1235667999999998888889999888876555555554 55545554
Q ss_pred HhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 319 SIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 319 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+.+. ...|.+.+++.++-...+...
T Consensus 166 ~TI~SR--Cq~~~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 166 ETILSR--CQDFIFKKVPLSVLQDYSEKL 192 (484)
T ss_pred HHHHhh--hheeeecCCCHHHHHHHHHHH
Confidence 333322 256899999988877766654
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.9e-05 Score=82.90 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=91.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH-------------------FELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 223 (505)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+.+....... |...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 68999999999999998743 22456789999999999999988763111100 1111
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
+.+........ +.+++++... .. -..+++-++|+|++...+....+.|...+...
T Consensus 91 lEidaAs~~gV-d~IRelle~a-----------------------~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 91 LEIDAASNTGI-DNIREVLENA-----------------------QYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred EEEeccccCCH-HHHHHHHHHH-----------------------HhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 11211111111 1111111111 00 01246678999999876766777888888765
Q ss_pred CCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 303 ANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 303 ~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+++|++|.+. .+...+. +....+.+.+++.++....+.+.
T Consensus 147 p~~v~fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred CCCcEEEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHH
Confidence 5566677666433 3322221 11255788899998877776643
No 49
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.6e-05 Score=83.55 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=94.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEecCCCCHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF--ELKIWIRVFEDFGERQIMRK 240 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~ 240 (505)
.+++|-+..++.|.+++... .-...+.++|+.|+||||+|+.+.+........ .+.. ...++....-..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHH
Confidence 67999999899999988753 234567899999999999999986421110000 0000 011111111111
Q ss_pred HHHHHHHhhhhccccCC---CCCchHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-
Q 037039 241 IMELIIEQIMTNYVFQG---DLNTHRLQQILRDC----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT- 312 (505)
Q Consensus 241 il~~l~~~~~~~~~~~~---~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT- 312 (505)
|...- +.+..... .....+..+.+... ..++.-++|||+++......++.|...+......+++|++|
T Consensus 87 i~~g~----h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 87 IDSGR----FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHcCC----CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 10000 00000000 00011111111110 12445589999999888888899988887766666666554
Q ss_pred CChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 313 RSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 313 R~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
....+...+.. ....+.+.+++.++....+...
T Consensus 163 d~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 163 DPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred CchhhhHHHHH--hceeeecCCCCHHHHHHHHHHH
Confidence 44444333222 2367899999999887777643
No 50
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.24 E-value=1.9e-05 Score=77.61 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=88.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++. ... ....++.+. .. .....+.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-cc-HHHHHHHH
Confidence 78999999999999988642 33567778999999999999999873 211 123344333 11 22222222
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHh
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSKILVTTRSRK-VASI 320 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~ 320 (505)
..+... . .+.+.+-+||+|++... .......+...+.....++++|+||.... +...
T Consensus 89 ~~~~~~--------------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 89 TRFAST--------------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHh--------------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 221110 0 01134558899999755 33344455555655566788898886542 2222
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHH
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+... ...+.+...+.++...++..
T Consensus 148 l~sR--~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 148 LRSR--CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHhh--ceEEEeCCCCHHHHHHHHHH
Confidence 2221 14567777777777766554
No 51
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.24 E-value=3.2e-05 Score=75.99 Aligned_cols=154 Identities=13% Similarity=0.215 Sum_probs=89.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe--cCCCCHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRV--FEDFGERQIMRK 240 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~ 240 (505)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+.. .++.+ +..... ....+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~-~~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGI-DVIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccch-HHHHH
Confidence 67899999999999988642 234578999999999999999987321 111211 12222 222111 12222
Q ss_pred HHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHH
Q 037039 241 IMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVAS 319 (505)
Q Consensus 241 il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~ 319 (505)
.+..+... .+ .....+-++++|++..........|...+......+.+|+++... .+..
T Consensus 88 ~i~~~~~~--------~~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~ 147 (319)
T PRK00440 88 KIKEFART--------AP------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIID 147 (319)
T ss_pred HHHHHHhc--------CC------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccch
Confidence 22222110 00 001235689999997665556667777776655667777776432 2222
Q ss_pred hhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 320 IMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+... ...+.+.+++.++....+...
T Consensus 148 ~l~sr--~~~~~~~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 148 PIQSR--CAVFRFSPLKKEAVAERLRYI 173 (319)
T ss_pred hHHHH--hheeeeCCCCHHHHHHHHHHH
Confidence 11111 145788899988877666543
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=2.3e-05 Score=78.37 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=94.1
Q ss_pred CcccccchhHHHHHHHHhcCCCC----CCCceeEEEEEecCCChHHHHHHHHhccccccc------------------cC
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG----KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE------------------HF 220 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------~F 220 (505)
.+++|.+..++.|.+.+..+..+ +..-...+.++|++|+|||++|+.+.+...-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 56899999999999999754210 001346688999999999999998865211100 01
Q ss_pred CceEEEEec-CCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHh
Q 037039 221 ELKIWIRVF-EDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSL 298 (505)
Q Consensus 221 ~~~~wv~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~ 298 (505)
+...++... ......+ .+++.+.+ .. -..+++-++|+|++...+....+.|...
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~-----------------------~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIA-----------------------ARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHH-----------------------HhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 111122111 0011111 11111111 11 1134556888899987777777888888
Q ss_pred hcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 299 LLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 299 l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+....+++.+|++|.+. .+...+.+ ....+.+.+++.++....+..
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrS--Rc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRS--RCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHh--hCeEEECCCCCHHHHHHHHHH
Confidence 87766677676666554 44433332 236789999999998887763
No 53
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.3e-05 Score=81.22 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=92.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc-------------------cCCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE-------------------HFELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 223 (505)
.++||-+..++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 67999999999999999643 2234678999999999999998876321111 11112
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
+.+..+......+ .+++++.+.. .-..++.-++|+|+++.......+.|...+....
T Consensus 91 ~eidaas~~~v~~-iR~l~~~~~~----------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp 147 (509)
T PRK14958 91 FEVDAASRTKVED-TRELLDNIPY----------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP 147 (509)
T ss_pred EEEcccccCCHHH-HHHHHHHHhh----------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC
Confidence 2222221111111 1222221100 0113566689999998877788888888888766
Q ss_pred CCcEEEEecC-ChHHHHhhccCCCCCceeCCCCChhhhHHHHH
Q 037039 304 NGSKILVTTR-SRKVASIMGTRGGTTGYNLQGLPFEDCLSLFM 345 (505)
Q Consensus 304 ~gs~iivTTR-~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~ 345 (505)
..+++|++|. ...+...+.. ....+.+.+++.++....+.
T Consensus 148 ~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~ 188 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQ 188 (509)
T ss_pred CCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHH
Confidence 6777776554 3333322222 12567888888887655443
No 54
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.6e-05 Score=81.29 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=91.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc-------------------cCCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE-------------------HFELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 223 (505)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+........ .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 67999999999999988743 2235568999999999999999876321100 11112
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
+++..+..... +.+++++..+. ..-..+++-++|+|++........+.|...+....
T Consensus 91 ~ei~~~~~~~v-d~ir~l~~~~~----------------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 91 IEVDAASNTQV-DAMRELLDNAQ----------------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred eEeeccccCCH-HHHHHHHHHHh----------------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence 22221111111 11111211110 00113566799999998777777888888888765
Q ss_pred CCcEEEEecCC-hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 304 NGSKILVTTRS-RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 304 ~gs~iivTTR~-~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+.+|++|.+ ..+...+.+ ....+.+.+++.++....+..
T Consensus 148 ~~~~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred CCEEEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHH
Confidence 66666665543 333221111 125678888888887766554
No 55
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=1.8e-05 Score=79.89 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=93.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEE-ecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIR-VFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i 241 (505)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|..+.+...-...+....|.. ...++.....-..+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 67999999999998888642 2234588999999999999998876322111111111110 01111111111111
Q ss_pred HHHHHHhhhhccc--cCCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-C
Q 037039 242 MELIIEQIMTNYV--FQGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT-R 313 (505)
Q Consensus 242 l~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R 313 (505)
.... +.+.. ........+-...+.+.+ .+++-++|+|++.......++.|...+....+.+.+|++| +
T Consensus 91 ~~~~----~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 91 DAGT----SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred hcCC----CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1100 00000 000001111111122222 3456688999998777778889988888766677766555 4
Q ss_pred ChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 314 SRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 314 ~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+...+... ...+++.+++.++....+..
T Consensus 167 ~~kl~~tl~sR--~~~v~f~~l~~~ei~~~l~~ 197 (397)
T PRK14955 167 LHKIPATIASR--CQRFNFKRIPLEEIQQQLQG 197 (397)
T ss_pred hHHhHHHHHHH--HHHhhcCCCCHHHHHHHHHH
Confidence 44444332221 14688899998887666654
No 56
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3e-05 Score=79.19 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=96.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc-------------------cccCCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV-------------------KEHFELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~ 223 (505)
.+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+...... ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 67999999999888888643 22357889999999999999888751100 0112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
+.+..+...+..+ .+++++.... .-..+++-++|+|++........+.|...+....
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp 144 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA 144 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC
Confidence 3333332222221 2222222200 0012456689999998777778888998888766
Q ss_pred CCcEEEEec-CChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 304 NGSKILVTT-RSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 304 ~gs~iivTT-R~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+.+++|++| ....+...+... ...+.+.+++.++....+...
T Consensus 145 ~~v~fIlatte~~Kl~~tI~SR--c~~~~f~~l~~~el~~~L~~i 187 (491)
T PRK14964 145 PHVKFILATTEVKKIPVTIISR--CQRFDLQKIPTDKLVEHLVDI 187 (491)
T ss_pred CCeEEEEEeCChHHHHHHHHHh--heeeecccccHHHHHHHHHHH
Confidence 777766655 444554433322 266889999988877776653
No 57
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=2.9e-05 Score=72.46 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=70.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
.+.+.|+|++|+|||+|++.+++. ....-..+.|+++..... .. .++.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~-----------------------~~~~~~~~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---FV-----------------------PEVLEGME 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---hh-----------------------HHHHHHhh
Confidence 357889999999999999999873 222223445665432100 00 01111111
Q ss_pred HHcCCceEEEEEecCCCCC-hhhHHH-HHHhhcC-CCCC-cEEEEecCCh---------HHHHhhccCCCCCceeCCCCC
Q 037039 270 DCLNGKRYLLVMDDVWNED-PEAWRN-LKSLLLG-GANG-SKILVTTRSR---------KVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~g-s~iivTTR~~---------~va~~~~~~~~~~~~~l~~L~ 336 (505)
+ --+|++||+.... ...|+. +...+.. ...| .++|+||+.. ++.+.+.+. ..+++++++
T Consensus 97 ~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~~~ 168 (235)
T PRK08084 97 Q-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQPLS 168 (235)
T ss_pred h-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecCCC
Confidence 1 1388999996431 234543 2233322 1123 4799998754 344444443 678999999
Q ss_pred hhhhHHHHHH
Q 037039 337 FEDCLSLFMK 346 (505)
Q Consensus 337 ~~~~~~Lf~~ 346 (505)
+++-.+++.+
T Consensus 169 ~~~~~~~l~~ 178 (235)
T PRK08084 169 DEEKLQALQL 178 (235)
T ss_pred HHHHHHHHHH
Confidence 9988888765
No 58
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2.3e-05 Score=85.19 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=94.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+.+......... ...+.....-..|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHH
Confidence 67999999999999998743 2235678999999999999999876322111100 00011111100000
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHH-----HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-CChH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRD-----CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT-RSRK 316 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~-----~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~ 316 (505)
..-.................+-+..|++ -..++.-++|||++.......++.|+..+.+-...+.+|++| ....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000000000000000000111111111 123556688999998888889999999998866666666555 4444
Q ss_pred HHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 317 VASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 317 va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+...+... ...|.+..++.++....+.+
T Consensus 163 Ll~TIrSR--c~~v~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 163 VIGTIRSR--THHYPFRLVPPEVMRGYLER 190 (824)
T ss_pred hhHHHHhh--eeEEEeeCCCHHHHHHHHHH
Confidence 54433332 36789999998887766655
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3e-05 Score=80.55 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=93.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+... |.-|... ..++.......+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 67999999999999988643 2246788999999999999999876321 1112111 1111111111111
Q ss_pred HHHHHhhhhccccCC---CCCchH---HHHHHHHH-cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-CC
Q 037039 243 ELIIEQIMTNYVFQG---DLNTHR---LQQILRDC-LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT-RS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~---~~~~~~---l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~ 314 (505)
.... ....... .....+ +...+... ..+++-++|+|++.......+..|...+......+.+|++| ..
T Consensus 84 ~~~h----~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 84 TNQS----VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred cCCC----CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 1100 0000000 000011 11111110 12344469999998777778888988887765566665544 44
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+... ...+.+.+++.++....+..
T Consensus 160 ~KLl~TI~SR--cq~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 160 QKIPLTIISR--CQRYNFKKLNNSELQELLKS 189 (605)
T ss_pred HhhhHHHHhh--hhhcccCCCCHHHHHHHHHH
Confidence 4443332221 26789999999988777665
No 60
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5.8e-05 Score=79.02 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=94.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+.+...-....+ ..+++....-..|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhh
Confidence 67999999999999998643 2234578999999999999999886321111000 00111111111110
Q ss_pred HHHHHhhhhccc-cCC-CCCchH----HHHHHHHH-cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecCC
Q 037039 243 ELIIEQIMTNYV-FQG-DLNTHR----LQQILRDC-LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTRS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~-~~~-~~~~~~----l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~ 314 (505)
..-... .+.. ... .....+ +.+.+... ..+++-++|+|++........+.|+..+......+.+|+ ||..
T Consensus 81 ~~~~~~--~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 81 PNGPGS--IDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred cccCCC--ceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 000000 0000 000 000111 11111111 124556899999988888888999998887666666565 5454
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+.+. ...+.+.+++.++..+.+..
T Consensus 159 ~kll~TI~SR--c~~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 159 EKVLPTIRSR--THHYPFRLLPPRTMRALIAR 188 (584)
T ss_pred HhhHHHHHHh--ceEEEeeCCCHHHHHHHHHH
Confidence 5554433332 26789999999887766654
No 61
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=6e-05 Score=75.30 Aligned_cols=153 Identities=18% Similarity=0.297 Sum_probs=91.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccc--------------------ccCCc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVK--------------------EHFEL 222 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~ 222 (505)
.+++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+.....-. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 67899999999999988643 234577899999999999998887531100 0121
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcC
Q 037039 223 KIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG 301 (505)
Q Consensus 223 ~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 301 (505)
.+++....... ....++++..+ .. -..+++-++|+|++........+.+...+..
T Consensus 88 ~~~~~~~~~~~-~~~~~~l~~~~-----------------------~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~ 143 (355)
T TIGR02397 88 VIEIDAASNNG-VDDIREILDNV-----------------------KYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE 143 (355)
T ss_pred EEEeeccccCC-HHHHHHHHHHH-----------------------hcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC
Confidence 12221111111 11122222221 10 0124555889999876666677888888866
Q ss_pred CCCCcEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 302 GANGSKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 ~~~gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+.+.+|++|.+.. +...+... ...+++.+++.++....+...
T Consensus 144 ~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~ 188 (355)
T TIGR02397 144 PPEHVVFILATTEPHKIPATILSR--CQRFDFKRIPLEDIVERLKKI 188 (355)
T ss_pred CccceeEEEEeCCHHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHH
Confidence 556677777765443 33333222 256788889888877776653
No 62
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=5e-05 Score=68.45 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=50.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+.+-++|+|++........+.|...+....+.+.+|++|++. .+...+.. ....+.+.+++.++..+.+.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCCHHHHHHHHHHc
Confidence 456789999998777777888988887766667777776643 33332222 2267899999999887777653
No 63
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.13 E-value=9e-06 Score=81.17 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=77.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 56788899999999988643 4677899999999999999988544445677888999998887665543210
Q ss_pred HHHHHhhhhccccCCCCC--chHHHHHHHHHcC--CceEEEEEecCCCCChhh-HHHHHHhhc
Q 037039 243 ELIIEQIMTNYVFQGDLN--THRLQQILRDCLN--GKRYLLVMDDVWNEDPEA-WRNLKSLLL 300 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~--~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~-~~~l~~~l~ 300 (505)
- ...+.. ..-+.+.+..... +++++||+|++...+... +..+...+.
T Consensus 247 P-----------~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 P-----------NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C-----------CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0 001111 1112233333322 468999999997655333 455544443
No 64
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=4.1e-05 Score=75.53 Aligned_cols=177 Identities=10% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc--cCCceEEEEecCCCCHHH
Q 037039 159 PNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE--HFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~v~~~~~~~~ 236 (505)
|.....++|.+.....+...+..+ .-...+.|+|+.|+||||+|..+.+...-.. .+... .....+....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCH
Confidence 334478999999999999998653 2345788999999999999998876321100 01111 0011111112
Q ss_pred HHHHHHHHHHHhhh---hc--ccc---CCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 237 IMRKIMELIIEQIM---TN--YVF---QGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 237 ~~~~il~~l~~~~~---~~--~~~---~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
..+.+...-...+. .. ... ...+.. +....+.+++ .+++-++|+|++...+....+.|...+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 22222211000000 00 000 001111 2222334433 3566799999998888888888888887755
Q ss_pred CCcEEEEec-CChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 304 NGSKILVTT-RSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 304 ~gs~iivTT-R~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
.++.+|++| +...+...+.+ ....+.+.+++.++...++..
T Consensus 170 ~~~~fiLit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred CCceEEEEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHH
Confidence 555555444 44344333322 236799999999999988876
No 65
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=2.2e-05 Score=72.68 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=67.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
.+.+.|+|++|+|||+|++.+++... ..+++.. .+..+++..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~------------------------ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA------------------------ 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh------------------------
Confidence 35689999999999999998886321 1233221 1111111111
Q ss_pred HHcCCceEEEEEecCCCC--ChhhHHHHHHhhcCCCCCcEEEEecCC---------hHHHHhhccCCCCCceeCCCCChh
Q 037039 270 DCLNGKRYLLVMDDVWNE--DPEAWRNLKSLLLGGANGSKILVTTRS---------RKVASIMGTRGGTTGYNLQGLPFE 338 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~iivTTR~---------~~va~~~~~~~~~~~~~l~~L~~~ 338 (505)
.+ -+|++||+... +.+++-.+...+.. .|..+|+|++. +++.+.+... ..+++++++.+
T Consensus 87 ---~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e 156 (226)
T PRK09087 87 ---AE--GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDA 156 (226)
T ss_pred ---hc--CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHH
Confidence 11 27888999532 23333333333333 35679998873 3344444443 77999999999
Q ss_pred hhHHHHHHh
Q 037039 339 DCLSLFMKF 347 (505)
Q Consensus 339 ~~~~Lf~~~ 347 (505)
+-..++.+.
T Consensus 157 ~~~~iL~~~ 165 (226)
T PRK09087 157 LLSQVIFKL 165 (226)
T ss_pred HHHHHHHHH
Confidence 999888865
No 66
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.08 E-value=7e-05 Score=71.90 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=78.1
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
.+.+.+|+.++..+..++...+ ..-+..|-|+|..|.|||.+.+.+++... -..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 3678999999999999887653 22355668999999999999999998441 235899999999999999999
Q ss_pred HHHHHHhhhhccccCCCC-CchHHHHHHHH--Hc--CCceEEEEEecCC
Q 037039 242 MELIIEQIMTNYVFQGDL-NTHRLQQILRD--CL--NGKRYLLVMDDVW 285 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~-~~~~l~~~l~~--~L--~~kr~LlVlDdvw 285 (505)
+.++......+....... +-.+....+.+ .. +++.++||||++.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad 125 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD 125 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH
Confidence 998841000000000000 11112333333 11 2568999999995
No 67
>PRK05642 DNA replication initiation factor; Validated
Probab=98.08 E-value=4.1e-05 Score=71.45 Aligned_cols=121 Identities=20% Similarity=0.297 Sum_probs=69.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
...+.|+|..|+|||+|++.+++. ....-..++|++..+ +... . ..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~----~--------------------~~~~ 92 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR----G--------------------PELL 92 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh----h--------------------HHHH
Confidence 356889999999999999999873 222223456665421 1110 0 0122
Q ss_pred HHcCCceEEEEEecCCCC-ChhhHHH-HHHhhcC-CCCCcEEEEecCChH---------HHHhhccCCCCCceeCCCCCh
Q 037039 270 DCLNGKRYLLVMDDVWNE-DPEAWRN-LKSLLLG-GANGSKILVTTRSRK---------VASIMGTRGGTTGYNLQGLPF 337 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~-~~~~~~~-l~~~l~~-~~~gs~iivTTR~~~---------va~~~~~~~~~~~~~l~~L~~ 337 (505)
+.+.+-. +||+||+... ....|+. +...+.. ...|..+|+||+... +.+.+.+. ..+++++++.
T Consensus 93 ~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g---l~~~l~~~~~ 168 (234)
T PRK05642 93 DNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA---LVFQMRGLSD 168 (234)
T ss_pred HhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC---eeeecCCCCH
Confidence 2222222 6889999632 2234543 4444432 234677999887542 22222222 5688899999
Q ss_pred hhhHHHHHH
Q 037039 338 EDCLSLFMK 346 (505)
Q Consensus 338 ~~~~~Lf~~ 346 (505)
++-..++..
T Consensus 169 e~~~~il~~ 177 (234)
T PRK05642 169 EDKLRALQL 177 (234)
T ss_pred HHHHHHHHH
Confidence 988888764
No 68
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=3.5e-05 Score=71.01 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=84.0
Q ss_pred cccc-chhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEecCCCCHHHHHHHH
Q 037039 165 IIGR-DKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE--LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 165 ~vGr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i 241 (505)
++|- ....-.....+.... +.....+.|+|..|+|||+|.+.+++ ...+..+ .++|+ +..++...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~ 79 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREF 79 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHH
Confidence 4564 333344445554442 23445578999999999999999998 4443332 34455 344556666
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC-hhhHHH-HHHhhcC-CCCCcEEEEecCCh---
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED-PEAWRN-LKSLLLG-GANGSKILVTTRSR--- 315 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTTR~~--- 315 (505)
...+.. . ....+...+. .-=+|++||+.... ...|+. +...+.. ...|.++|+|+...
T Consensus 80 ~~~~~~---------~------~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 80 ADALRD---------G------EIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHT---------T------SHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred HHHHHc---------c------cchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 555521 0 1123444444 34478899996432 223433 3332222 13466899999643
Q ss_pred ------HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 316 ------KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 316 ------~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
++.+.+.+. -.+++++++.++...++.+.
T Consensus 144 l~~~~~~L~SRl~~G---l~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 144 LSGLLPDLRSRLSWG---LVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp TTTS-HHHHHHHHCS---EEEEE----HHHHHHHHHHH
T ss_pred ccccChhhhhhHhhc---chhhcCCCCHHHHHHHHHHH
Confidence 333444443 67899999999888888764
No 69
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=8.8e-06 Score=79.94 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=59.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC--CCHHHHHHHHHHHHHHhhhhccccCCCCCc-hH---
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED--FGERQIMRKIMELIIEQIMTNYVFQGDLNT-HR--- 263 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~-~~--- 263 (505)
-..++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .+..++++.++..+.... ...+... ..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast-----~d~p~~~~~~va~ 241 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST-----FDEPASRHVQVAE 241 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEec-----CCCChHHHHHHHH
Confidence 357889999999999999999995433 37999999999866 778888887754332110 1111111 11
Q ss_pred -HHHHHHHH-cCCceEEEEEecCC
Q 037039 264 -LQQILRDC-LNGKRYLLVMDDVW 285 (505)
Q Consensus 264 -l~~~l~~~-L~~kr~LlVlDdvw 285 (505)
..+..... -.+++.+|++|++.
T Consensus 242 ~v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHHHcCCCeEEEEEChh
Confidence 11112222 35899999999994
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.9e-05 Score=75.18 Aligned_cols=154 Identities=14% Similarity=0.261 Sum_probs=89.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc------cccCCceE-EEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV------KEHFELKI-WIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~v~~~~~~~ 235 (505)
.+++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+.... ...|+..+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 67899999999999998643 23468889999999999999998763211 01122111 1111111111
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-CC
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT-RS 314 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~ 314 (505)
....++++.+.. .-..+++-++++|++.......++.+...+......+.+|++| ..
T Consensus 91 ~~i~~l~~~~~~----------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 91 DDIRNLIDQVRI----------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred HHHHHHHHHHhh----------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 111122221100 0112455589999997656667777877776544455565555 33
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+... ...+++.+++.++....+..
T Consensus 149 ~kl~~~l~sr--~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 149 HKIIPTILSR--CQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred ccCCHHHHhc--ceeEecCCccHHHHHHHHHH
Confidence 3333322221 25688999998887776664
No 71
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=2.5e-05 Score=78.56 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=86.0
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|++..+++|.+.+..+-. .+-..++-|.++|++|+|||++|+.+++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 6789999999999887643211 01134566889999999999999999883 2222 233221 1
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------ChhhHHHHHHhhcC---
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPEAWRNLKSLLLG--- 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~--- 301 (505)
.+ .... .++ ....+...+...-...+.+|+||++... +.+....+...+..
T Consensus 200 ~l----~~~~---------~g~--~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 200 EL----VQKF---------IGE--GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred HH----hHhh---------ccc--hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 11 1111 000 0111222222222356789999999632 11222333333321
Q ss_pred --CCCCcEEEEecCChHHHH-hhc-cCCCCCceeCCCCChhhhHHHHHH
Q 037039 302 --GANGSKILVTTRSRKVAS-IMG-TRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va~-~~~-~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+..||.||...+... .+- ..--...+.+...+.++-.++|..
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 123556777776543221 111 100124688999999988888864
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=7.6e-05 Score=78.56 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=95.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEecCCCCHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE--LKIWIRVFEDFGERQIMRK 240 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~ 240 (505)
.+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+.+......... ...+ ..+.....-..
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 78999999999999998753 2345788999999999999999987321111110 0000 00111111111
Q ss_pred HHHHHHHhhhhccccCCCCCchHHHHHHHHH-----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec-CC
Q 037039 241 IMELIIEQIMTNYVFQGDLNTHRLQQILRDC-----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT-RS 314 (505)
Q Consensus 241 il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~ 314 (505)
|...-...+..-. ........++.+ +.+. ..+++-++|+|++........+.|...+..-..++.+|++| ..
T Consensus 95 i~~g~h~Dv~e~~-a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 95 IMEGRHVDVLEMD-AASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HhcCCCCceEEec-ccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 1110000000000 000011111111 1111 12455679999998777778888888887766677776554 44
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+...+... ...+.+..++.++....+...
T Consensus 173 ~kll~tI~SR--cq~~~f~~l~~~el~~~L~~i 203 (598)
T PRK09111 173 RKVPVTVLSR--CQRFDLRRIEADVLAAHLSRI 203 (598)
T ss_pred hhhhHHHHhh--eeEEEecCCCHHHHHHHHHHH
Confidence 4444333222 267889999998877777653
No 73
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=6.4e-05 Score=74.56 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=99.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEE---EEecCCCCHHHHH
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIW---IRVFEDFGERQIM 238 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w---v~v~~~~~~~~~~ 238 (505)
..+++|.+..++.|.+.+..+ .-...+.++|+.|+||+|+|..+.+..--......... ......+.....-
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 378999999999999988753 22456889999999999999887653211110000000 0000000001111
Q ss_pred HHHHHHHHHhhhhccc---cC-----CCCCchHHHHHHHHHcC-----CceEEEEEecCCCCChhhHHHHHHhhcCCCCC
Q 037039 239 RKIMELIIEQIMTNYV---FQ-----GDLNTHRLQQILRDCLN-----GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANG 305 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~---~~-----~~~~~~~l~~~l~~~L~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 305 (505)
+.+...-...+..-.+ .. ..+. .+-+..+.+.+. +.+-++|+|++...+....+.|...+..-..+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~-VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVIT-VDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEeccccccccccccccc-HHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111100000000000 00 0011 122223333332 45679999999888888888999888876667
Q ss_pred cEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 306 SKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 306 s~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+.+|++|.+.. +...+. .....+.+.+++.++..+++...
T Consensus 172 ~~~IL~t~~~~~llpti~--SRc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIR--SRCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred eEEEEEECCchhchHHhh--ccceEEECCCCCHHHHHHHHHHh
Confidence 77777776653 332222 23467999999999998888753
No 74
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.03 E-value=1e-05 Score=78.65 Aligned_cols=264 Identities=16% Similarity=0.177 Sum_probs=160.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHH-HHHhhhhccccCCCCCchHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMEL-IIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
...+.+.++|.|||||||++-.+.. +..-|..-.|+..-.+......+.-++.. ++.. ..+......
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~---------~~~g~~~~~ 79 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLH---------VQPGDSAVD 79 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccc---------cccchHHHH
Confidence 3458899999999999999987765 56678766655555555555555544443 4221 111122344
Q ss_pred HHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhccCCCCCceeCCCCChh-hhHHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGYNLQGLPFE-DCLSLFM 345 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~~~~~~~~~l~~L~~~-~~~~Lf~ 345 (505)
.+.....++|.++|+||..+. ...-..+...+..+.+.-.|+.|+|..... .+...+.+.+|+.. ++.++|.
T Consensus 80 ~~~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~~L~~~d~a~~lf~ 152 (414)
T COG3903 80 TLVRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV------AGEVHRRVPSLSLFDEAIELFV 152 (414)
T ss_pred HHHHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCCccccCCchhHHHH
Confidence 566777889999999998321 122233455566666777788898876432 22356778888765 6888887
Q ss_pred Hh------------------HHhhhhccCCC-------------ChHHHHHHHcccccccc-------ccCCcchhHHHh
Q 037039 346 KF------------------RTLGSVLCGKT-------------DKRDWEFVRDNEIWQLE-------QMERGILPTLRL 387 (505)
Q Consensus 346 ~~------------------~~ig~~L~~~~-------------~~~~w~~~~~~~~~~~~-------~~~~~i~~~l~~ 387 (505)
.. ..|...+.+-+ ...+-...++.....+. .......+.+.+
T Consensus 153 ~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~w 232 (414)
T COG3903 153 CRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDW 232 (414)
T ss_pred HHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhh
Confidence 55 11111111111 00111111111100111 112346788999
Q ss_pred hHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCCceeE
Q 037039 388 SYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLKELLSRFFFQDLSFGMLGMETFS 467 (505)
Q Consensus 388 sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~ 467 (505)
||.-|....+..|.-++.|...|... ...|.+.|-... .+.-....-+..|++.+++-..... ....
T Consensus 233 s~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~----~~a~ 299 (414)
T COG3903 233 SYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLL----GRAR 299 (414)
T ss_pred hhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhh----hHHH
Confidence 99999999999999999998876554 345555443211 1233456678899999998776544 3446
Q ss_pred EEeChhHHHHHHHhhh
Q 037039 468 FKMHDLMHDLAQQVAK 483 (505)
Q Consensus 468 ~~mHdlv~~~a~~~~~ 483 (505)
|+.-+-+|.|+..+..
T Consensus 300 ~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 300 YRLLETGRRYALAELH 315 (414)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777788888776554
No 75
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.0001 Score=77.80 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=93.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEE-ecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIR-VFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i 241 (505)
.+++|.+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......++.-.|.. +...+.....-..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 67999999999999888643 2235588999999999999988876321111111001111 01111111111111
Q ss_pred HHHHHHhhhhccc--cCCCCC-chHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecC
Q 037039 242 MELIIEQIMTNYV--FQGDLN-THRLQQILRDC----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTR 313 (505)
Q Consensus 242 l~~l~~~~~~~~~--~~~~~~-~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR 313 (505)
...- +.+.. ...... ..++...+... ..+.+-++|+|+++.......+.|...+..-...+.+|+ |++
T Consensus 91 ~~g~----~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 91 DAGT----SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred hccC----CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1100 00000 000001 11122111111 234556889999987777788889888887655666555 444
Q ss_pred ChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 314 SRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 314 ~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+...+... ...+++.+++.++....+..
T Consensus 167 ~~kLl~TI~SR--c~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 167 LHKIPATIASR--CQRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred hhhhhHHHHhh--ceEEecCCCCHHHHHHHHHH
Confidence 44444333222 26789999998887666554
No 76
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00015 Score=75.92 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=92.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..+..|.+.+... .-...+.++|+.|+||||+|+.+.+......... ...++....-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 67899998888888888642 2246788999999999999999887322111000 00111111111111
Q ss_pred HHHHHhhhhccccCCC--CCchHHHHHHHHH-----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-
Q 037039 243 ELIIEQIMTNYVFQGD--LNTHRLQQILRDC-----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS- 314 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~-----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~- 314 (505)
... +.+...... ....+-...|.+. ..+++-+||+|++........+.|...+........+|++|.+
T Consensus 84 ~g~----hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 84 QGM----HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred cCC----CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 100 000000000 0001111112111 2356679999999877777888888888764445556665544
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+.. ....+.+.+++.++....+..
T Consensus 160 ~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 160 HKFPVTIVS--RCQHFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred hhhhHHHHh--hhhccccCCCCHHHHHHHHHH
Confidence 444433222 125689999999988877764
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=0.0001 Score=70.15 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=79.5
Q ss_pred cccccchhHHHHHHHHhcC---------CCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCH
Q 037039 164 DIIGRDKDREKIIELLMQT---------SDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGE 234 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 234 (505)
.++|.+..++.|.+..... .-...+....+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877776665432110 001123456678999999999999999976311001011112233221
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC--------hhhHHHHHHhhcCCCCCc
Q 037039 235 RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED--------PEAWRNLKSLLLGGANGS 306 (505)
Q Consensus 235 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs 306 (505)
.++. ... .++ ........+... . ..+|++|++.... .+....+...+.......
T Consensus 83 ~~l~----~~~---------~g~--~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 ADLV----GEY---------IGH--TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred HHhh----hhh---------ccc--hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 1111 111 000 111122333322 1 3488999996421 223444555554444444
Q ss_pred EEEEecCChHHHH------hhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 307 KILVTTRSRKVAS------IMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 307 ~iivTTR~~~va~------~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+|+++...+... .+...- ...+.+++++.++-.+++.+.
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHHHHHHHHHH
Confidence 5556654433211 111110 134788899988888887653
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.97 E-value=5.3e-05 Score=82.62 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=84.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccc---cccccC-CceEEEEecCCCCHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQ---RVKEHF-ELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~v~~~~~~~~~~ 238 (505)
..++||+.+++.+++.|... ...-+.++|++|+|||++|+.+++.. .+...+ +..+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH-
Confidence 57999999999999988643 22345699999999999999998732 111112 334442 1 11111
Q ss_pred HHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC---------hhhHHHHHHhhcCCCCCcEEE
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED---------PEAWRNLKSLLLGGANGSKIL 309 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~ii 309 (505)
+..- ...+.....+...+.+.-..++.+|++|+++... .+.-+.|+..+..+ .-++|
T Consensus 250 ---~a~~---------~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~I 315 (731)
T TIGR02639 250 ---LAGT---------KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCI 315 (731)
T ss_pred ---hhhc---------cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEE
Confidence 1000 0000001112333333223468899999996221 11223344444332 12344
Q ss_pred EecCChHHH------HhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 310 VTTRSRKVA------SIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 vTTR~~~va------~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
-+|...+.. ..+.. ....+.+..++.++..+++...
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCceEEeCCCCHHHHHHHHHHH
Confidence 444432211 11111 1256899999999999998854
No 79
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.94 E-value=2.4e-05 Score=65.88 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 569999999999999999984
No 80
>PRK08116 hypothetical protein; Validated
Probab=97.93 E-value=4e-05 Score=72.86 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=58.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
..+.++|.+|+|||+||..+++. ...+...+++++ ..+++..+...+. ... ... ...+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~---------~~~--~~~-~~~~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYK---------SSG--KED-ENEIIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHh---------ccc--ccc-HHHHHH
Confidence 35789999999999999999984 333333455554 3344444444331 111 011 112333
Q ss_pred HcCCceEEEEEecCCCCChhhHHH--HHHhhcC-CCCCcEEEEecCCh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRN--LKSLLLG-GANGSKILVTTRSR 315 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~--l~~~l~~-~~~gs~iivTTR~~ 315 (505)
.+.+-. ||||||+.......|.. |...+.. -.+|..+||||...
T Consensus 175 ~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 175 SLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344333 89999996443344533 4433332 13456799998654
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.92 E-value=9.3e-05 Score=68.87 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=62.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
...+.|+|.+|+|||+||+.+++... ...+ ...+++..... ..+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~----------~~~------------------------ 85 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL----------LAF------------------------ 85 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH----------HHH------------------------
Confidence 45788999999999999999988321 1111 23344322110 000
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcCC-CCCc-EEEEecCChHHHH--------hhccCCCCCceeCCCCChhh
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG-ANGS-KILVTTRSRKVAS--------IMGTRGGTTGYNLQGLPFED 339 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTTR~~~va~--------~~~~~~~~~~~~l~~L~~~~ 339 (505)
... ...-+||+||+...+...-..|...+... ..|. .+|+|++...... .+.. ...+.+.+++.++
T Consensus 86 ~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~---~~~i~l~pl~~~~ 161 (227)
T PRK08903 86 DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW---GLVYELKPLSDAD 161 (227)
T ss_pred hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc---CeEEEecCCCHHH
Confidence 011 22347889999654333333454445331 2333 4666666433221 1111 1568899999876
Q ss_pred hHHHHH
Q 037039 340 CLSLFM 345 (505)
Q Consensus 340 ~~~Lf~ 345 (505)
-..++.
T Consensus 162 ~~~~l~ 167 (227)
T PRK08903 162 KIAALK 167 (227)
T ss_pred HHHHHH
Confidence 554443
No 82
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00043 Score=66.49 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=71.9
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
..+.++|++|+||||+|+.++........-...-|+.++ ... +...+. +. ........+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~----l~~~~~---------g~--~~~~~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDD----LVGQYI---------GH--TAPKTKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHH----HHHHHh---------cc--chHHHHHHHHH
Confidence 347789999999999999997621111111111244443 111 222221 10 11112222333
Q ss_pred HcCCceEEEEEecCCCC---------ChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhccC-----CCCCceeCCCCC
Q 037039 271 CLNGKRYLLVMDDVWNE---------DPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGTR-----GGTTGYNLQGLP 336 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~~-----~~~~~~~l~~L~ 336 (505)
. ..-+|+||++... ..+....|...+.....+.+||+++............ --...+.+++++
T Consensus 121 a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t 197 (287)
T CHL00181 121 A---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYT 197 (287)
T ss_pred c---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcC
Confidence 2 2249999999642 2234445555565555567777777654432221110 001468999999
Q ss_pred hhhhHHHHHHh
Q 037039 337 FEDCLSLFMKF 347 (505)
Q Consensus 337 ~~~~~~Lf~~~ 347 (505)
.++...++...
T Consensus 198 ~~el~~I~~~~ 208 (287)
T CHL00181 198 PEELLQIAKIM 208 (287)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 83
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.90 E-value=0.00012 Score=75.12 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=88.0
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhcccccccc-----CCceEEEEecC
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH-----FELKIWIRVFE 230 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~v~~ 230 (505)
.++.|.+..+++|.+.+..+-. .+-..++-+.++|++|+|||++|+.+++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 6788899999999887642110 01123456889999999999999999984 2222 12334444332
Q ss_pred CCCHHHHHHHHHHHHHHhhhhccccCCCCCc-hHHHHHHHHH-cCCceEEEEEecCCCCC-------hhh-----HHHHH
Q 037039 231 DFGERQIMRKIMELIIEQIMTNYVFQGDLNT-HRLQQILRDC-LNGKRYLLVMDDVWNED-------PEA-----WRNLK 296 (505)
Q Consensus 231 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~-L~~kr~LlVlDdvw~~~-------~~~-----~~~l~ 296 (505)
. .++ ... .++.... ..+....++. ..+++++|+||+++..- ... ...|.
T Consensus 260 ~----eLl----~ky---------vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 260 P----ELL----NKY---------VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred h----hhc----ccc---------cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 1 111 100 0000000 0112222222 23578999999996310 111 22344
Q ss_pred HhhcCC--CCCcEEEEecCChHHHH-hhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 297 SLLLGG--ANGSKILVTTRSRKVAS-IMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 297 ~~l~~~--~~gs~iivTTR~~~va~-~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+... ..+..||.||...+... .+-..+. ...+.+...+.++..++|..+
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHH
Confidence 434322 23445555665443221 1111011 145899999999999999865
No 84
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00021 Score=73.16 Aligned_cols=134 Identities=15% Similarity=0.230 Sum_probs=78.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF--ELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
..-+.|+|..|+|||+|++.+.+ .+.... -.++++ +..+++..+...+... .+....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~-------------~~~~~~ 199 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKT-------------HKEIEQ 199 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHh-------------hhHHHH
Confidence 34588999999999999999988 333222 123344 3345666666665220 011223
Q ss_pred HHHHcCCceEEEEEecCCCCC-hhhH-HHHHHhhcC-CCCCcEEEEecCCh---------HHHHhhccCCCCCceeCCCC
Q 037039 268 LRDCLNGKRYLLVMDDVWNED-PEAW-RNLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGYNLQGL 335 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~iivTTR~~---------~va~~~~~~~~~~~~~l~~L 335 (505)
+.+.+. ..-+||+||+.... ...+ +.+...+.. ...|..||+|+... .+...+.+. -.+.++++
T Consensus 200 ~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G---l~~~L~~p 275 (450)
T PRK14087 200 FKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG---LSIAIQKL 275 (450)
T ss_pred HHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC---ceeccCCc
Confidence 444443 23488899996432 1222 334333332 12345688887643 222233232 56789999
Q ss_pred ChhhhHHHHHHhH
Q 037039 336 PFEDCLSLFMKFR 348 (505)
Q Consensus 336 ~~~~~~~Lf~~~~ 348 (505)
+.++-..++.+..
T Consensus 276 d~e~r~~iL~~~~ 288 (450)
T PRK14087 276 DNKTATAIIKKEI 288 (450)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998763
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=6.9e-05 Score=82.50 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=84.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc---cccc-CCceEE-EEecCCCCHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR---VKEH-FELKIW-IRVFEDFGERQI 237 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~w-v~v~~~~~~~~~ 237 (505)
..++||+.++++++..|.... ..-+.++|++|+||||||+.+..... +... .+..+| +.++.-......
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 679999999999999886532 23455999999999999999887321 1111 123333 222110000000
Q ss_pred HHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc-CCceEEEEEecCCCCC-------hhhH-HHHHHhhcCCCCCcEE
Q 037039 238 MRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL-NGKRYLLVMDDVWNED-------PEAW-RNLKSLLLGGANGSKI 308 (505)
Q Consensus 238 ~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~-------~~~~-~~l~~~l~~~~~gs~i 308 (505)
..+ -...+...+.+.- .+++.+|++|+++... ..+- +.|+..+..+ .-++
T Consensus 261 ~ge-------------------~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~ 319 (852)
T TIGR03345 261 KGE-------------------FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRT 319 (852)
T ss_pred chH-------------------HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEE
Confidence 000 0011222232222 2468999999986421 1111 1234433322 2455
Q ss_pred EEecCChHHHHhhcc----CCCCCceeCCCCChhhhHHHHHHh
Q 037039 309 LVTTRSRKVASIMGT----RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 309 ivTTR~~~va~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
|-||..++....... ......+.+++++.++...++...
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 555554332111110 012267999999999999996533
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00029 Score=72.17 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=89.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc---------------------cCC
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE---------------------HFE 221 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~ 221 (505)
.+++|.+..++.+.+.+..+ .-...+.++|+.|+||||+|+.+.+...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 68999999999999988643 2246678999999999999988875311100 111
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcC
Q 037039 222 LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG 301 (505)
Q Consensus 222 ~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 301 (505)
.+++.-...... +..+++.+.+. ..-..+++-++|+|++........+.|...+..
T Consensus 92 -~~~i~g~~~~gi-d~ir~i~~~l~----------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 92 -VLEIDGASHRGI-EDIRQINETVL----------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE 147 (451)
T ss_pred -eEEeeccccCCH-HHHHHHHHHHH----------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc
Confidence 111110001111 11111111110 001125667889999976666677778888877
Q ss_pred CCCCcEEEEecC-ChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 302 GANGSKILVTTR-SRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 302 ~~~gs~iivTTR-~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...++.+|++|. ...+...+.. ....+.+.+++.++....+..
T Consensus 148 p~~~~~~Il~t~~~~kl~~tI~s--Rc~~v~f~~l~~~el~~~L~~ 191 (451)
T PRK06305 148 PPQHVKFFLATTEIHKIPGTILS--RCQKMHLKRIPEETIIDKLAL 191 (451)
T ss_pred CCCCceEEEEeCChHhcchHHHH--hceEEeCCCCCHHHHHHHHHH
Confidence 655666766653 3333332222 125689999999887766554
No 87
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00023 Score=75.68 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=92.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+....-.....+ ...++.... ..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~------~~~pC~~C~---~~- 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD------LLEPCQECI---EN- 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC------CCCchhHHH---Hh-
Confidence 67999999999999999643 2345678999999999999998875211000000 000000000 00
Q ss_pred HHHHHhhhhccccCCC---CCchH---HHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEE-EecCC
Q 037039 243 ELIIEQIMTNYVFQGD---LNTHR---LQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKIL-VTTRS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~---~~~~~---l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTTR~ 314 (505)
... ......... ....+ +.+.+.. -..+++-++|+|++.......+..|...+......+.+| +||..
T Consensus 83 --~~~--~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 83 --VNN--SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred --hcC--CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 000 000000000 00111 1111111 123566699999998777788888888887755555555 45555
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+... ...+.+.+++.++....+..
T Consensus 159 ~KLl~TI~SR--cq~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 159 HKIPLTILSR--VQRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred hhhhHHHHhh--ceeEEccCCCHHHHHHHHHH
Confidence 5554333222 26789999999988777654
No 88
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.88 E-value=0.00019 Score=68.97 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHH
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDC 271 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (505)
-+.++|++|+|||++|+.+..-...........|+.++. . +++..+ .+. ........+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~---------~g~--~~~~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQY---------IGH--TAPKTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhh---------ccc--chHHHHHHHHHc
Confidence 477999999999999977765211111111123444431 1 122222 111 111122223332
Q ss_pred cCCceEEEEEecCCCC---------ChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhccC-----CCCCceeCCCCCh
Q 037039 272 LNGKRYLLVMDDVWNE---------DPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGTR-----GGTTGYNLQGLPF 337 (505)
Q Consensus 272 L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~~-----~~~~~~~l~~L~~ 337 (505)
..-+|+||++... ..+.+..|...+.....+.+||+++............ --...+.+++++.
T Consensus 121 ---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 121 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred ---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 2368999999622 1234556666666555566777776544332221110 0014589999999
Q ss_pred hhhHHHHHHh
Q 037039 338 EDCLSLFMKF 347 (505)
Q Consensus 338 ~~~~~Lf~~~ 347 (505)
+|-..++...
T Consensus 198 edl~~I~~~~ 207 (284)
T TIGR02880 198 AELLVIAGLM 207 (284)
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00042 Score=71.49 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=90.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc--c-----------------ccCCce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV--K-----------------EHFELK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~-----------------~~F~~~ 223 (505)
.+++|.+..+..+.+.+... .-...+.++|+.|+||||+|+.+...... . ..|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 67899999999999999643 22356778999999999999988752110 0 001111
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
+++..+...... ..+. +.+.+.. -..+++-++|+|+++.......+.|...+...
T Consensus 91 ~eidaas~~gvd-~ir~-----------------------I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep 146 (486)
T PRK14953 91 IEIDAASNRGID-DIRA-----------------------LRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP 146 (486)
T ss_pred EEEeCccCCCHH-HHHH-----------------------HHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC
Confidence 222111111100 0011 1111111 11356779999999877667778888888776
Q ss_pred CCCcEEEEec-CChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 303 ANGSKILVTT-RSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 303 ~~gs~iivTT-R~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+.+.+|++| +...+...+... ...+.+.+++.++....+...
T Consensus 147 p~~~v~Il~tt~~~kl~~tI~SR--c~~i~f~~ls~~el~~~L~~i 190 (486)
T PRK14953 147 PPRTIFILCTTEYDKIPPTILSR--CQRFIFSKPTKEQIKEYLKRI 190 (486)
T ss_pred CCCeEEEEEECCHHHHHHHHHHh--ceEEEcCCCCHHHHHHHHHHH
Confidence 5556565554 433443322221 256888999988877666553
No 90
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00029 Score=74.77 Aligned_cols=169 Identities=13% Similarity=0.179 Sum_probs=93.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+.+.......+. ....++.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 68999999999998888643 2235678999999999999999886321100000 011122222222222
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHH-----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-hH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDC-----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS-RK 316 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~ 316 (505)
......... ..........++. .+.+. ..+++-++|+|++........+.|...+......+.+|++|.+ ..
T Consensus 85 ~~~~~d~~~-i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 85 EGSAVDVIE-MDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred cCCCCeEEE-EeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 211000000 0000001111111 12221 1245678999999776667788888888776666667665543 33
Q ss_pred HHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 317 VASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 317 va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+...+... ...+.+..++.++....+..
T Consensus 163 ll~tI~SR--~~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 163 VPATILSR--CQRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred hhHHHHhc--cceeeCCCCCHHHHHHHHHH
Confidence 43333222 25678888888877666554
No 91
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00011 Score=72.47 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=110.6
Q ss_pred CCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 160 NVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..+..++||+.+++.+.+++...-+ ....+.+-|.|-+|.|||.+...++.+......=..+++++...-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 4457899999999999999986543 35567888999999999999999987532221113456776665566778888
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCc--eEEEEEecCCCCChhhHHHHHHhhcC-CCCCcEEEEecCChH
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGK--RYLLVMDDVWNEDPEAWRNLKSLLLG-GANGSKILVTTRSRK 316 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTTR~~~ 316 (505)
.|...+..... ......+.+..+..+..+. .+|+|+|.++......-..|...|.. .-+++++|+.---..
T Consensus 225 kI~~~~~q~~~------s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 225 KIFSSLLQDLV------SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHHHhc------CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh
Confidence 88887744221 1122255666677766543 68999999853221111222222222 234566555321110
Q ss_pred ------HHHhhcc--CCCCCceeCCCCChhhhHHHHHHh
Q 037039 317 ------VASIMGT--RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 317 ------va~~~~~--~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
....+.. .-....+...|-+.++-.++|...
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 1111111 111256788888999999999877
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00029 Score=74.48 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=90.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+.+...-....+ ...++....-..|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 68999999999999988643 2245678999999999999998876321111000 00111111111110
Q ss_pred HHHHHhhhhccccCC--CCCchHHHHHHHHH-----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecCC
Q 037039 243 ELIIEQIMTNYVFQG--DLNTHRLQQILRDC-----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTRS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~-----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~ 314 (505)
..- ..+....+ +....+-...+.+. ..+++-++|+|++...+....+.|...+......+.+|+ ||..
T Consensus 84 ~g~----~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 84 EGR----SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred cCC----CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 000 00000000 00001111111111 124556899999987777788889888887656666665 5444
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+... ...+.+.+++.++....+..
T Consensus 160 ~kl~~tI~SR--c~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 160 HKVPITILSR--CQRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred hhhhHHHHHh--hhhhhcCCCCHHHHHHHHHH
Confidence 5554433322 25678888888776655543
No 93
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.00013 Score=66.88 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=62.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
+.+.|+|++|+|||+|++.+++... . .++. ... .. . .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~----------------------~~-----~-------~ 81 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIF----------------------FN-----E-------E 81 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhh----------------------hc-----h-------h
Confidence 5689999999999999998877321 1 1211 000 00 0 0
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-------HHHhhccCCCCCceeCCCCChhhhHHH
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-------VASIMGTRGGTTGYNLQGLPFEDCLSL 343 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-------va~~~~~~~~~~~~~l~~L~~~~~~~L 343 (505)
.+ ...-+|++||+........-.+...+. ..|..+|+|++... +.+.+.+. .++++++++.++-..+
T Consensus 82 ~~-~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g---l~~~l~~pd~~~~~~~ 155 (214)
T PRK06620 82 IL-EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV---LSILLNSPDDELIKIL 155 (214)
T ss_pred HH-hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC---ceEeeCCCCHHHHHHH
Confidence 01 123478899995322122222222222 34668999987442 23333332 5789999999887777
Q ss_pred HHHh
Q 037039 344 FMKF 347 (505)
Q Consensus 344 f~~~ 347 (505)
+.+.
T Consensus 156 l~k~ 159 (214)
T PRK06620 156 IFKH 159 (214)
T ss_pred HHHH
Confidence 6653
No 94
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.82 E-value=0.00016 Score=66.28 Aligned_cols=119 Identities=26% Similarity=0.404 Sum_probs=70.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|.+.+++.|++-...--. .....-+.++|..|+|||+|++.+.+...-+. .+ -|.+... -+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~---------~L 91 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE---------DL 91 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH---------Hh
Confidence 7899999999999875433221 23345677899999999999999987321111 11 1222210 00
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCC-CCChhhHHHHHHhhcCC---CCCcEEEEecCC
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVW-NEDPEAWRNLKSLLLGG---ANGSKILVTTRS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~---~~gs~iivTTR~ 314 (505)
.. -.++.+.|+. ...||+|.+||+. +.....+..|++.|..+ .|...+|..|.|
T Consensus 92 ~~----------------l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 GD----------------LPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred cc----------------HHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 00 0112222331 3569999999985 34556788888888753 333444444443
No 95
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00018 Score=73.40 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=73.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
..-+.|+|+.|+|||+|++.+.+. .......+++++ ...+...+...+.. . . ...++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~---------~---~---~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRS---------G---E---MQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhc---------c---h---HHHHH
Confidence 356789999999999999999983 332223345553 23344444444310 0 0 12244
Q ss_pred HHcCCceEEEEEecCCCCChhh--HHHHHHhhcC-CCCCcEEEEecCCh-H----HHHhhccC-CCCCceeCCCCChhhh
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEA--WRNLKSLLLG-GANGSKILVTTRSR-K----VASIMGTR-GGTTGYNLQGLPFEDC 340 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~-~~~gs~iivTTR~~-~----va~~~~~~-~~~~~~~l~~L~~~~~ 340 (505)
..+. ..-+|++||+....... .+.+...+.. ...|..||+||... . +...+.+. .....+.+.+++.++-
T Consensus 198 ~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 198 QFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred HHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 4443 33488889986432111 1223333221 11355788888542 1 11111111 1115688999999999
Q ss_pred HHHHHHh
Q 037039 341 LSLFMKF 347 (505)
Q Consensus 341 ~~Lf~~~ 347 (505)
..++.+.
T Consensus 277 ~~iL~~k 283 (445)
T PRK12422 277 RSFLERK 283 (445)
T ss_pred HHHHHHH
Confidence 8888765
No 96
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.78 E-value=0.00019 Score=60.74 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=26.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
..+.|+|++|+||||+++.+... .......++++..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEE
Confidence 57889999999999999999883 222222355554443
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00037 Score=73.92 Aligned_cols=152 Identities=14% Similarity=0.226 Sum_probs=94.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc---------------------cccCC
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV---------------------KEHFE 221 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------~~~F~ 221 (505)
.+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+...... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 67999999999999998643 23456889999999999999887663210 01222
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH-HcCCceEEEEEecCCCCChhhHHHHHHhhc
Q 037039 222 LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLL 300 (505)
Q Consensus 222 ~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 300 (505)
. ..+........ +.+++++.++ .. -..+++-++|+|++.......++.|...+.
T Consensus 92 ~-~~ld~~~~~~v-d~Ir~li~~~-----------------------~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LE 146 (614)
T PRK14971 92 I-HELDAASNNSV-DDIRNLIEQV-----------------------RIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLE 146 (614)
T ss_pred e-EEecccccCCH-HHHHHHHHHH-----------------------hhCcccCCcEEEEEECcccCCHHHHHHHHHHHh
Confidence 1 11211111111 1111222211 00 012345588999998777788889999988
Q ss_pred CCCCCcEEEE-ecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 301 GGANGSKILV-TTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 301 ~~~~gs~iiv-TTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
.-..++.+|+ ||....+...+... ...+.+.+++.++....+..
T Consensus 147 epp~~tifIL~tt~~~kIl~tI~SR--c~iv~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 147 EPPSYAIFILATTEKHKILPTILSR--CQIFDFNRIQVADIVNHLQY 191 (614)
T ss_pred CCCCCeEEEEEeCCchhchHHHHhh--hheeecCCCCHHHHHHHHHH
Confidence 7666676665 44545554443332 26789999999888777664
No 98
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00091 Score=69.18 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=92.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccc--cc----------------CC-ce
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVK--EH----------------FE-LK 223 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~----------------F~-~~ 223 (505)
.+++|-+..++.|...+..+ .-..++.++|+.|+||||+|+.+.+..--. .. +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 67999999999999988643 234567899999999999999876521100 00 10 11
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 224 IWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 224 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
+.+..+..... +..++++.... ..-..+++-++|+|++.....+..+.|...+....
T Consensus 89 ~eldaas~~gI-d~IRelie~~~----------------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 89 IEMDAASNRGI-DDIRELIEQTK----------------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred EEeccccccCH-HHHHHHHHHHh----------------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 11111111111 11111111110 00012456689999998878888888988887766
Q ss_pred CCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 304 NGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 304 ~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+++|++|.+. .+...+.. ....+.+.+++.++....+...
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~I 188 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILS--RTQHFRFKQIPQNSIISHLKTI 188 (535)
T ss_pred CceEEEEEECChhhCchHHHh--hceeEEcCCCCHHHHHHHHHHH
Confidence 677777666543 33222222 2367899999998877776543
No 99
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.71 E-value=0.00035 Score=71.00 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=71.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE--LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
...+.|+|++|+|||+|++.+++ ....... .+++++ ..++...+...+.. . . ...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~---------~--~----~~~ 192 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRN---------N--K----MEE 192 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHc---------C--C----HHH
Confidence 35688999999999999999998 3433332 344553 23444444444421 0 1 112
Q ss_pred HHHHcCCceEEEEEecCCCCChh-hH-HHHHHhhcC-CCCCcEEEEecCCh-HHHHh----hcc-CCCCCceeCCCCChh
Q 037039 268 LRDCLNGKRYLLVMDDVWNEDPE-AW-RNLKSLLLG-GANGSKILVTTRSR-KVASI----MGT-RGGTTGYNLQGLPFE 338 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTTR~~-~va~~----~~~-~~~~~~~~l~~L~~~ 338 (505)
+.+.+++ .-+|+|||+...... .+ +.+...+.. ...|..+|+||... .-... +.+ ......+.+++.+.+
T Consensus 193 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 193 FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 2233322 348899999643211 11 223333322 12345688887642 11111 111 011145788888988
Q ss_pred hhHHHHHHh
Q 037039 339 DCLSLFMKF 347 (505)
Q Consensus 339 ~~~~Lf~~~ 347 (505)
+-..++.+.
T Consensus 272 ~r~~il~~~ 280 (405)
T TIGR00362 272 TRLAILQKK 280 (405)
T ss_pred HHHHHHHHH
Confidence 888887764
No 100
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.70 E-value=0.00015 Score=80.14 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=84.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc---ccccC-CceEEEEecCCCCHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR---VKEHF-ELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~~~ 238 (505)
..++||+++++++++.|.... ..-+.++|++|+|||++|..++.... +.... +..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 458999999999999997532 23446999999999999999887321 11111 244553 1 11111
Q ss_pred HHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------ChhhHHHHHHhhcCCCCCcEEEE
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------DPEAWRNLKSLLLGGANGSKILV 310 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iiv 310 (505)
+... ...+.-...+...+.+.-..++.+|++|+++.. +...-+.|+..+..+ .-++|.
T Consensus 247 ---~ag~---------~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~Ig 312 (821)
T CHL00095 247 ---LAGT---------KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIG 312 (821)
T ss_pred ---hccC---------CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEE
Confidence 0000 000000111333333333457899999999521 111122334333332 234555
Q ss_pred ecCChHHHHhhcc----CCCCCceeCCCCChhhhHHHHHHh
Q 037039 311 TTRSRKVASIMGT----RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 311 TTR~~~va~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+|...+....... ......+.+...+.++...++...
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 5554443221110 111255788888888887777643
No 101
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00094 Score=70.10 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=92.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..+..|...+..+ .-...+.++|+.|+||||+|+.+.+..-....... .++.....-..|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHH
Confidence 68999999999999999743 23457889999999999999998873211100000 0000000001110
Q ss_pred HHHHHhhhhccc-cCCC--CCchHHHHHH---HH-HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecC-C
Q 037039 243 ELIIEQIMTNYV-FQGD--LNTHRLQQIL---RD-CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTR-S 314 (505)
Q Consensus 243 ~~l~~~~~~~~~-~~~~--~~~~~l~~~l---~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR-~ 314 (505)
.. ...+.. .... ....++.+.. .. -..+++-++|+|++.......++.|...+....+.+.+|++|. .
T Consensus 84 ~~----~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 84 ND----NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred cC----CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 00 000000 0000 0111111111 11 1235666899999987777788888888887666666666554 3
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+... ...+.+.+++.++-...+..
T Consensus 160 ~kL~~tI~SR--c~~~~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 160 HKLPATIKSR--CQHFNFRLLSLEKIYNMLKK 189 (563)
T ss_pred HHhHHHHHHh--ceEEEecCCCHHHHHHHHHH
Confidence 4443333222 25688888988887666654
No 102
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.69 E-value=0.0009 Score=73.59 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.|.+++.........+..++.++|++|+|||++|+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999998876432111122335799999999999999999987
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.001 Score=70.70 Aligned_cols=171 Identities=12% Similarity=0.217 Sum_probs=92.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|.+..+..|..++... .-...+.++|+.|+||||+|+.+++..... ..+.. ....+......+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 67899999999999988753 223567899999999999999998732111 11000 001122112212221
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecC-ChHH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDC----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTR-SRKV 317 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~v 317 (505)
.........- ..........+.+.+... ..+++-++|+|++.......++.|...+......+.+|++|. ...+
T Consensus 86 ~g~h~D~~ei-~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 86 AGNALDVIEI-DAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred cCCCccEEEE-eccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 1110000000 000001111111111111 124556899999987777788889888887555565555444 3333
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+.. ....+.+..++.++....+..
T Consensus 165 lpTIrS--Rc~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 165 LPTIIS--RCQRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred hHHHHh--heeEEEecCCCHHHHHHHHHH
Confidence 333222 125678888888876665543
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.68 E-value=0.00069 Score=69.82 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=73.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE--LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
...+.|+|++|+|||+|++.+.+ .....++ .+++++. ..+...+...+.. . . ...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~---------~--~----~~~ 204 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRN---------N--T----MEE 204 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHc---------C--c----HHH
Confidence 45688999999999999999998 4444442 2345532 3344444444311 0 1 122
Q ss_pred HHHHcCCceEEEEEecCCCCCh-h-hHHHHHHhhcC-CCCCcEEEEecCChH---------HHHhhccCCCCCceeCCCC
Q 037039 268 LRDCLNGKRYLLVMDDVWNEDP-E-AWRNLKSLLLG-GANGSKILVTTRSRK---------VASIMGTRGGTTGYNLQGL 335 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~~~-~-~~~~l~~~l~~-~~~gs~iivTTR~~~---------va~~~~~~~~~~~~~l~~L 335 (505)
+.+.++ +.-+|||||+..... . ..+.+...+.. ...|..||+||.... +...+... ..+.+++.
T Consensus 205 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g---l~v~i~~p 280 (450)
T PRK00149 205 FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG---LTVDIEPP 280 (450)
T ss_pred HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC---eeEEecCC
Confidence 333333 244899999964311 1 11233333321 123455888776532 12222221 56889999
Q ss_pred ChhhhHHHHHHh
Q 037039 336 PFEDCLSLFMKF 347 (505)
Q Consensus 336 ~~~~~~~Lf~~~ 347 (505)
+.++-..++.+.
T Consensus 281 d~~~r~~il~~~ 292 (450)
T PRK00149 281 DLETRIAILKKK 292 (450)
T ss_pred CHHHHHHHHHHH
Confidence 999988888765
No 105
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.67 E-value=0.00038 Score=69.87 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=84.9
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|.+..+++|.+.+..+-. .+-..++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 6789999999988876642110 01134567889999999999999999983 22222 22211 1
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------Chh---hHHHHHHhhcC
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPE---AWRNLKSLLLG 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~---~~~~l~~~l~~ 301 (505)
. +.... .++ ....+...+.......+.+|+||++... +.. .+..+...+..
T Consensus 214 ~----l~~k~---------~ge--~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 E----FVQKY---------LGE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred H----HHHHh---------cch--hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 1 11111 000 1111233333444567899999997521 111 12222222322
Q ss_pred --CCCCcEEEEecCChHHHH-hh-ccCCCCCceeCCCCChhhhHHHHHH
Q 037039 302 --GANGSKILVTTRSRKVAS-IM-GTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+..||.||...+... .+ ...--...+.+...+.++...+|..
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 224567888887554322 11 1111124577877777777777664
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.66 E-value=0.00025 Score=78.68 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=36.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++||+.++++++..|.... ...+.++|++|+|||++|..+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 569999999999999996532 234458999999999999988773
No 107
>PRK08181 transposase; Validated
Probab=97.65 E-value=0.00016 Score=68.50 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=53.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
.-+.++|++|+|||.||..+.+ ......-.+.|+++ .+++..+.... . +.. ....+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~---------~--~~~---~~~~l~~ 164 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVAR---------R--ELQ---LESAIAK 164 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHH---------h--CCc---HHHHHHH
Confidence 3488999999999999999987 33333334455532 33433332211 0 011 1122222
Q ss_pred HcCCceEEEEEecCCCCChhhH--HHHHHhhcCCCCCcEEEEecCCh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAW--RNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~--~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
+. +-=||||||+.......| ..|...+.....+..+||||...
T Consensus 165 -l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 165 -LD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -Hh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 22 334999999964322222 23444444321123588888754
No 108
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.65 E-value=0.00057 Score=64.67 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=71.0
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHHHHHHHHHHH
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQIMRKIMELI 245 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l 245 (505)
..++.+.++|..+. ..+.+-+.|||.+|.|||++++++....-... .--.++.|.....++...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 33555666665543 46677899999999999999999986422111 011466778888999999999999999
Q ss_pred HHhhhhccccCCCCCchHHHHHHHHHcCC-ceEEEEEecCCC
Q 037039 246 IEQIMTNYVFQGDLNTHRLQQILRDCLNG-KRYLLVMDDVWN 286 (505)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~ 286 (505)
+... ........+.......++. +--+||+|.+.+
T Consensus 121 gaP~------~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 121 GAPY------RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred Cccc------CCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 6532 1222223334444445543 445889999964
No 109
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0004 Score=70.99 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=74.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccC-C-ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF-E-LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
..-+.|+|.+|+|||+|++.+++ .....+ . .++|++. .+++.++...+.. . . ...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~---------~--~----~~~ 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKE---------G--K----LNE 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhc---------c--c----HHH
Confidence 34588999999999999999998 443433 2 3455543 3455555554411 0 1 112
Q ss_pred HHHHcCCceEEEEEecCCCC-ChhhH-HHHHHhhcC-CCCCcEEEEecC-ChHHHHhh----cc-CCCCCceeCCCCChh
Q 037039 268 LRDCLNGKRYLLVMDDVWNE-DPEAW-RNLKSLLLG-GANGSKILVTTR-SRKVASIM----GT-RGGTTGYNLQGLPFE 338 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~-~~~~~-~~l~~~l~~-~~~gs~iivTTR-~~~va~~~----~~-~~~~~~~~l~~L~~~ 338 (505)
+.+.+..+.-+|++||+... +...+ ..+...+.. ...|..||+||. ...-...+ .+ ......+.+++.+.+
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 33333334568999999632 11111 223333221 123456888874 33221111 11 011146789999998
Q ss_pred hhHHHHHHh
Q 037039 339 DCLSLFMKF 347 (505)
Q Consensus 339 ~~~~Lf~~~ 347 (505)
.-..++.+.
T Consensus 267 ~r~~IL~~~ 275 (440)
T PRK14088 267 TRKKIARKM 275 (440)
T ss_pred HHHHHHHHH
Confidence 888887765
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00038 Score=75.38 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=84.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc---cccc-CCceEEEEecCCCCHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR---VKEH-FELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~wv~v~~~~~~~~~~ 238 (505)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++.... +... .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~-- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS-- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH--
Confidence 469999999999999887532 12345899999999999999886311 1111 13444421 1111
Q ss_pred HHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------ChhhHHHHHHhhcCCCCCcEEEE
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------DPEAWRNLKSLLLGGANGSKILV 310 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iiv 310 (505)
++... ...+.....+...+...-+.++.+|++|++... ...+...+..++...+ .-++|-
T Consensus 253 --llaG~---------~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIg 320 (758)
T PRK11034 253 --LLAGT---------KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIG 320 (758)
T ss_pred --Hhccc---------chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEe
Confidence 11000 000000111222222222346789999999631 1223333333333222 234555
Q ss_pred ecCChHHHHhhcc----CCCCCceeCCCCChhhhHHHHHHh
Q 037039 311 TTRSRKVASIMGT----RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 311 TTR~~~va~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+|...+....... ......+.++.++.++...++...
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 5544443221110 012256899999999999998754
No 111
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.63 E-value=0.00036 Score=65.06 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=56.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-.... ..+.... .+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~---------~~~~~~~----~~l 157 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFS---------NSETSEE----QLL 157 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHh---------hccccHH----HHH
Confidence 347889999999999999999984 322223445553 2333333332220 0011111 222
Q ss_pred HHcCCceEEEEEecCCCCChhhHHH--HHHhhcCC-CCCcEEEEecCCh
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRN--LKSLLLGG-ANGSKILVTTRSR 315 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~~ 315 (505)
+.+. +.=||||||+.......|.. +...+... ...-.+||||...
T Consensus 158 ~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 158 NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 3344 34488889997655566664 33333321 1234477777643
No 112
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00079 Score=62.36 Aligned_cols=149 Identities=20% Similarity=0.292 Sum_probs=85.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+|+|.++-++.+.=++.... ..+..+-.+.++|++|.||||||.-+.+. ...++. +.-....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~l---------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPAL---------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccc----------
Confidence 789999998888876665432 23566888999999999999999999983 332221 0000000
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcC--------CCCCcEEE-----
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG--------GANGSKIL----- 309 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~gs~ii----- 309 (505)
....++...|.. |+. .=.|.+|.++......-+-|..++.+ .++++|.+
T Consensus 89 ----------------eK~gDlaaiLt~-Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 89 ----------------EKPGDLAAILTN-LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----------------cChhhHHHHHhc-CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 012223333333 232 33455677765544333334443332 23444433
Q ss_pred ------EecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 310 ------VTTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 ------vTTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
-|||.-.+.+.+...-+ -+.+++--+.+|-.+.....
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFG-i~~rlefY~~~eL~~Iv~r~ 193 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFG-IIQRLEFYTVEELEEIVKRS 193 (332)
T ss_pred CeeEeeeccccccccchhHHhcC-CeeeeecCCHHHHHHHHHHH
Confidence 48987766655544311 34667777777766666554
No 113
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.62 E-value=0.001 Score=67.07 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=76.1
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHH
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDC 271 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (505)
++.|.|+-++||||+++.+... ..+. .+++...+......-+.+.+..+ ...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~-----------------------~~~ 90 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAY-----------------------IEL 90 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHH-----------------------HHh
Confidence 9999999999999999666552 1111 45554433222222122222222 111
Q ss_pred cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhc---cCCCCCceeCCCCChhhhHH
Q 037039 272 LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMG---TRGGTTGYNLQGLPFEDCLS 342 (505)
Q Consensus 272 L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~---~~~~~~~~~l~~L~~~~~~~ 342 (505)
-..++.+|+||.|.. ...|......+.+.++. +|++|+.+........ -.|....+.+-||+..|-..
T Consensus 91 ~~~~~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 91 KEREKSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred hccCCceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 112789999999954 47898888888876666 8898887765432211 12444679999999999865
No 114
>PRK12377 putative replication protein; Provisional
Probab=97.62 E-value=0.00035 Score=65.28 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=56.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
...+.++|.+|+|||+||..+.+. .....-.++++++. +++..+-.... ..... .. +.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~----------~~~~~---~~-~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYD----------NGQSG---EK-FL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHh----------ccchH---HH-HH
Confidence 357889999999999999999984 33333345666442 33333332220 00011 11 22
Q ss_pred HHcCCceEEEEEecCCCCChhhHH--HHHHhhcCC-CCCcEEEEecCC
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWR--NLKSLLLGG-ANGSKILVTTRS 314 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 314 (505)
+.+ .+-=||||||+.......|. .|...+... .+.-.+||||..
T Consensus 159 ~~l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 159 QEL-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHh-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 222 34569999999544333443 344444432 223347888764
No 115
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00065 Score=67.36 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=82.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
....+.|+|..|.|||.|++.+.+ ....+.+....+.+ +......+.+..+.. .-.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------------~~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRD---------------NEMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHh---------------hhHHHH
Confidence 467899999999999999999999 55555553333333 334445555554421 113445
Q ss_pred HHHcCCceEEEEEecCCCC-ChhhH-HHHHHhhcC-CCCCcEEEEecCCh---------HHHHhhccCCCCCceeCCCCC
Q 037039 269 RDCLNGKRYLLVMDDVWNE-DPEAW-RNLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~-~~~~~-~~l~~~l~~-~~~gs~iivTTR~~---------~va~~~~~~~~~~~~~l~~L~ 336 (505)
++.. .-=++++||++-. ..+.| +.+...|.. ...|-.||+|++.. .+.+.+.+. -.+.+.+.+
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~Pd 245 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPPD 245 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCCC
Confidence 5555 3348899999632 11122 223333322 12334899998643 444555444 779999999
Q ss_pred hhhhHHHHHHh
Q 037039 337 FEDCLSLFMKF 347 (505)
Q Consensus 337 ~~~~~~Lf~~~ 347 (505)
.+....++.+.
T Consensus 246 ~e~r~aiL~kk 256 (408)
T COG0593 246 DETRLAILRKK 256 (408)
T ss_pred HHHHHHHHHHH
Confidence 99998888875
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.60 E-value=0.00038 Score=65.09 Aligned_cols=159 Identities=13% Similarity=0.211 Sum_probs=96.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceE-EEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKI-WIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~~~~i 241 (505)
.+++|.+..+.-|.+.+.. ...++...+|++|.|||+-|.......--.+.|++++ -.++|..-... +.+.=
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 7799999999999998874 3467888999999999998887776322245566554 23444432222 10000
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHc--CCce-EEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-hHH
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCL--NGKR-YLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS-RKV 317 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v 317 (505)
+..+. .+........ ..++ -.||||++.....+.|..|...+......++.|+.+.. ..+
T Consensus 109 ik~fa----------------kl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 109 IKNFA----------------KLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hcCHH----------------HHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 00000 0000000000 1234 37899999988889999999999886666766655433 222
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+.+ ....+..++|..++...-+..
T Consensus 173 i~pi~S--RC~KfrFk~L~d~~iv~rL~~ 199 (346)
T KOG0989|consen 173 IRPLVS--RCQKFRFKKLKDEDIVDRLEK 199 (346)
T ss_pred ChHHHh--hHHHhcCCCcchHHHHHHHHH
Confidence 222211 124578888988877666554
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.58 E-value=0.00099 Score=63.33 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=60.2
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH--------HHHHHHhhhhc-cccCCCCCch
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI--------MELIIEQIMTN-YVFQGDLNTH 262 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i--------l~~l~~~~~~~-~~~~~~~~~~ 262 (505)
-+.+.|++|+|||+||+.+.+ .... ..+.++.....+..+++... ...+....... ......+...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 456899999999999999986 2221 23445555555544443221 11110000000 0000001111
Q ss_pred HHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC----------------CCCcEEEEecCCh
Q 037039 263 RLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG----------------ANGSKILVTTRSR 315 (505)
Q Consensus 263 ~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~~gs~iivTTR~~ 315 (505)
.+....+ +...|++|++...+.+.+..|...+..+ .++.+||+|+...
T Consensus 98 ----~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 98 ----RLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred ----hHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 1111112 3468999999877777777787776432 1356788888753
No 118
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0013 Score=64.70 Aligned_cols=169 Identities=10% Similarity=0.110 Sum_probs=90.2
Q ss_pred cccc-cchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 164 DIIG-RDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 164 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.++| -+..++.+.+.+..+ .-.....++|+.|+||||+|..+.+..--....... .+.....-..+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 4566 666677777777532 335677899999999999998886521111100000 000000000000
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HH
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDC----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KV 317 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v 317 (505)
..-......-...+......++.+.+... ..+.+=++|+|++...+....+.|...+.....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000000000000001111111111111 23455679999998777778888999998877788788777654 33
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+.+ ....+.+.+++.++....+..
T Consensus 154 l~TIrS--Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILS--RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHh--hceeeeCCCCCHHHHHHHHHH
Confidence 333322 236789999999998777764
No 119
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.58 E-value=0.00038 Score=77.21 Aligned_cols=138 Identities=17% Similarity=0.270 Sum_probs=78.5
Q ss_pred CcccccchhHHHHHHHHhcCCCC---CCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG---KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+...+.....+ .+....++.++|++|+|||++|+.+... ....-...+.+.++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 56999999999999988753211 1223467889999999999999999862 111111223333332211111
Q ss_pred HHHHHHHHhhhhccccCCCCCc-hHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNT-HRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSK 307 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ 307 (505)
...+.. .++...+.+. ..+...++. ....+|+||++...+...+..|...+..+. ..+-
T Consensus 640 --~~~l~g----~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 640 --VARLIG----APPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred --HHHhcC----CCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 111110 0000011111 113333322 233599999999888899999988886541 2344
Q ss_pred EEEecCC
Q 037039 308 ILVTTRS 314 (505)
Q Consensus 308 iivTTR~ 314 (505)
||+||..
T Consensus 711 iI~TSn~ 717 (852)
T TIGR03346 711 IIMTSNL 717 (852)
T ss_pred EEEeCCc
Confidence 7777764
No 120
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.00046 Score=76.34 Aligned_cols=44 Identities=27% Similarity=0.490 Sum_probs=36.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++||+.++++++..|.... ..-+.++|++|+|||+||..+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH
Confidence 569999999999999997532 23455999999999999999887
No 121
>PRK10536 hypothetical protein; Provisional
Probab=97.56 E-value=0.0022 Score=59.52 Aligned_cols=137 Identities=13% Similarity=0.224 Sum_probs=74.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEE----ecCC-----CC
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIR----VFED-----FG 233 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----v~~~-----~~ 233 (505)
..+.++......+..+|.. ..++.+.|++|+|||+||..+..+.-..+.|+..+-.. +.+. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4577888888888888853 24899999999999999988776422233454333321 1110 11
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH-----------HHHcCCceE---EEEEecCCCCChhhHHHHHHhh
Q 037039 234 ERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL-----------RDCLNGKRY---LLVMDDVWNEDPEAWRNLKSLL 299 (505)
Q Consensus 234 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l-----------~~~L~~kr~---LlVlDdvw~~~~~~~~~l~~~l 299 (505)
..+-+.-.+.-+...+..- . ....+...+ ..++++..+ +||+|.+.+.+..+...+ +
T Consensus 127 ~~eK~~p~~~pi~D~L~~~--~----~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~---l 197 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRR--L----GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF---L 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH--h----ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHH---H
Confidence 1111111122211111000 0 000011111 135566654 999999987766544444 4
Q ss_pred cCCCCCcEEEEecCChH
Q 037039 300 LGGANGSKILVTTRSRK 316 (505)
Q Consensus 300 ~~~~~gs~iivTTR~~~ 316 (505)
...+.+|++|+|--..+
T Consensus 198 tR~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 198 TRLGENVTVIVNGDITQ 214 (262)
T ss_pred hhcCCCCEEEEeCChhh
Confidence 44457899999865443
No 122
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00057 Score=71.28 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=75.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHF--ELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
..+.|+|..|+|||.|++.+++ .....+ -.++|++ ..+++.++...+.. . ....+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~---------~------~~~~f 371 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRD---------G------KGDSF 371 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHh---------c------cHHHH
Confidence 3588999999999999999998 343332 2334553 33444444444311 0 11223
Q ss_pred HHHcCCceEEEEEecCCCC-ChhhHH-HHHHhhcC-CCCCcEEEEecCCh---------HHHHhhccCCCCCceeCCCCC
Q 037039 269 RDCLNGKRYLLVMDDVWNE-DPEAWR-NLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~-~~~~~~-~l~~~l~~-~~~gs~iivTTR~~---------~va~~~~~~~~~~~~~l~~L~ 336 (505)
++.+.+ -=+|||||+... ..+.|+ .|...+.. ...|..|||||... .+.+.+... -.+.++..+
T Consensus 372 ~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G---Lvv~I~~PD 447 (617)
T PRK14086 372 RRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG---LITDVQPPE 447 (617)
T ss_pred HHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC---ceEEcCCCC
Confidence 333332 347889999643 222332 23333322 12355688888753 233333333 678999999
Q ss_pred hhhhHHHHHHh
Q 037039 337 FEDCLSLFMKF 347 (505)
Q Consensus 337 ~~~~~~Lf~~~ 347 (505)
.+.-..++.++
T Consensus 448 ~EtR~aIL~kk 458 (617)
T PRK14086 448 LETRIAILRKK 458 (617)
T ss_pred HHHHHHHHHHH
Confidence 99988888765
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0017 Score=68.32 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=92.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+.........- ...+++....-..|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 78999999999999998753 234567789999999999999886521110000 011122111111111
Q ss_pred HHHHHhhhhccccCC--CCCchHHHHHHHHH-----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE-ecCC
Q 037039 243 ELIIEQIMTNYVFQG--DLNTHRLQQILRDC-----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV-TTRS 314 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~-----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~ 314 (505)
... ..+...-+ .....+-...+... ..++.-++|+|++.......+..|...+......+.+|+ ||..
T Consensus 84 ~g~----~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 84 NGS----LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cCC----CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 100 00000000 00111111122222 235667889999987777788888888876555555555 4444
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 315 RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 315 ~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+...+.. ....+.+.+++.++....+..
T Consensus 160 ~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 160 HKIPATILS--RCQRFDFKRISVEDIVERLKY 189 (559)
T ss_pred hhCcHHHHh--HheEEecCCCCHHHHHHHHHH
Confidence 444332222 125678888888887666654
No 124
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=3.9e-05 Score=67.49 Aligned_cols=34 Identities=24% Similarity=0.589 Sum_probs=27.3
Q ss_pred EEEEEecCCChHHHHHHHHhcccccc-ccCCceEE
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVK-EHFELKIW 225 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 225 (505)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854443 35677776
No 125
>PRK06526 transposase; Provisional
Probab=97.55 E-value=0.00019 Score=67.50 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.-+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45789999999999999998763
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.54 E-value=0.00037 Score=76.13 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=71.3
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+.+.+..... ..+....++.++|++|+|||+||+.++.. . +...+.+..++-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 4578999889988888764211 11223457889999999999999999872 2 2233444444321111
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCC-ceEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNG-KRYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
.+...++. ++...+.+.. ..+.+.++. ..-+|+||++...+.+.++.|...+..+
T Consensus 525 ~~~~lig~-----~~gyvg~~~~---~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGA-----PPGYVGFEQG---GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcC-----CCCCcccchh---hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11111110 0000111111 123333333 3459999999988888888888887654
No 127
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.53 E-value=0.00051 Score=66.48 Aligned_cols=122 Identities=14% Similarity=0.209 Sum_probs=68.0
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHH
Q 037039 167 GRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELII 246 (505)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~ 246 (505)
++........+++..... ....+-+.|+|..|+|||.||..+++. ....--.+.++++ ..++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 444445555566653321 123456889999999999999999984 3222223455543 244444443331
Q ss_pred HhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHH--HHHhh-cCC-CCCcEEEEecCC
Q 037039 247 EQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRN--LKSLL-LGG-ANGSKILVTTRS 314 (505)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTTR~ 314 (505)
.+ .....+.. ++ +-=||||||+.......|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ----------~~----~~~~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 ----------DG----SVKEKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ----------cC----cHHHHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 00 11222222 22 45589999997665667753 44444 322 244568888864
No 128
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.53 E-value=0.0021 Score=70.15 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=88.9
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
+.+.+|.+..+++|+.+|............++.++|++|+||||+|+.+.. .....| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch
Confidence 467899999999999888642111122345799999999999999999986 222222 112333322322111000
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhh----HHHHHHhhcCC---------------
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEA----WRNLKSLLLGG--------------- 302 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~~--------------- 302 (505)
.. . .+.....+...+...- ...-+|+||.+....... ...|...+...
T Consensus 396 -~~----------~-~g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 396 -RT----------Y-IGSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred -hc----------c-CCCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccccc
Confidence 00 0 0111122333444322 234478899996432211 23444444321
Q ss_pred CCCcEEEEecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 303 ANGSKILVTTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 303 ~~gs~iivTTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
-.+.-+|.||....+...+- ++...+.+.+++.++-.++...+
T Consensus 463 ls~v~~i~TaN~~~i~~aLl--~R~~ii~~~~~t~eek~~Ia~~~ 505 (784)
T PRK10787 463 LSDVMFVATSNSMNIPAPLL--DRMEVIRLSGYTEDEKLNIAKRH 505 (784)
T ss_pred CCceEEEEcCCCCCCCHHHh--cceeeeecCCCCHHHHHHHHHHh
Confidence 12333444554433322221 23367899999999988877665
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.52 E-value=0.00026 Score=78.03 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=77.8
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+.+.+..... ..+....++.++|++|+|||.||+.+... .-......+=+.++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 6799999999999998854211 11334568899999999999999988652 1111111111221111000 0
Q ss_pred HHHHHHHHhhhhccccCCCCCch-HHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTH-RLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSK 307 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~-~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ 307 (505)
.+ ..+. +.++.-.+.... .+...+++ ...-+|+||++...++..++.|...+..+. ..+-
T Consensus 640 ~~-~~l~----g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 640 TV-SRLK----GSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred hh-cccc----CCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 00 1110 000000011111 13333332 455699999998878888888888877652 3566
Q ss_pred EEEecCC
Q 037039 308 ILVTTRS 314 (505)
Q Consensus 308 iivTTR~ 314 (505)
||+||..
T Consensus 712 iI~TSNl 718 (852)
T TIGR03345 712 ILLTSNA 718 (852)
T ss_pred EEEeCCC
Confidence 7777764
No 130
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.51 E-value=0.00019 Score=69.90 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=46.0
Q ss_pred CCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccc
Q 037039 158 QPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
.++...+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+..
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344445899999999999999976543334556899999999999999999998743
No 131
>PRK09183 transposase/IS protein; Provisional
Probab=97.51 E-value=0.00035 Score=66.14 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+.|+|++|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4577999999999999999976
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.51 E-value=0.00038 Score=70.46 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=85.0
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|.+..+++|.+.+...-. -+-....-+.++|++|+|||+||+.+++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence 6788999999999887742110 0112345678999999999999999998 333333 222111
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------Chhh---HHHHHHhhcC
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPEA---WRNLKSLLLG 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~---~~~l~~~l~~ 301 (505)
.+ .... .++ ....+...+.....+.+.+|+||++... +.+. ...+...+..
T Consensus 252 eL----~~k~---------~Ge--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 252 EL----IQKY---------LGD--GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred hh----hhhh---------cch--HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 11 1111 000 0111222333333467889999997421 0111 1122222221
Q ss_pred --CCCCcEEEEecCChHHHHhhcc--CCCCCceeCCCCChhhhHHHHHH
Q 037039 302 --GANGSKILVTTRSRKVASIMGT--RGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va~~~~~--~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+.+||.||...+.....-. ..-...+.+...+.++..++|..
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 1335678888875544332111 01124678888888888888864
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00039 Score=76.89 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=78.3
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.|.+.+..... ..+....++.++|+.|+|||+||+.+.+. .-..-...+-+..++-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc---
Confidence 6789999999999888763211 11233456778999999999999998762 111111223333332111111
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCce-EEEEEecCCCCChhhHHHHHHhhcCC-----------CCCcE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKR-YLLVMDDVWNEDPEAWRNLKSLLLGG-----------ANGSK 307 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~ 307 (505)
+..-++. ++...+.+.. ..|.+.++.++ .+++||++...+...++.|...+..+ ...+-
T Consensus 584 -~~~l~g~-----~~gyvg~~~~---~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 584 -VSKLIGS-----PPGYVGYNEG---GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred -HHHhcCC-----CCcccCcCcc---chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 1111100 0000111111 12334444444 58999999888888898888887764 13455
Q ss_pred EEEecCCh
Q 037039 308 ILVTTRSR 315 (505)
Q Consensus 308 iivTTR~~ 315 (505)
+|+||...
T Consensus 655 ~I~Tsn~g 662 (821)
T CHL00095 655 IIMTSNLG 662 (821)
T ss_pred EEEeCCcc
Confidence 67777643
No 134
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0023 Score=62.27 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=98.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc-------------cccCCceEEEEec
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV-------------KEHFELKIWIRVF 229 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~v~ 229 (505)
.+++|.+..++.+.+.+..+ .-.....++|+.|+||+++|..+.+..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 46899999999999988643 22478899999999999998777652110 1123344454321
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCCC
Q 037039 230 EDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGAN 304 (505)
Q Consensus 230 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 304 (505)
...+-..+-.+-+...+. .......+.. +-...+.+.+ .+++-++|+|++...+....+.|...+-.-++
T Consensus 79 ~~~~g~~~~~~~~~~~~~----~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 79 YQHQGKLITASEAEEAGL----KRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN 153 (314)
T ss_pred ccccccccchhhhhhccc----cccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC
Confidence 000000000000010000 0000001111 1122333333 35667899999987777888889998877554
Q ss_pred CcEEEEecCChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 305 GSKILVTTRSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 305 gs~iivTTR~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..-|++|+....+...+.+. ...+.+.+++.++..+.+...
T Consensus 154 ~~fILi~~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 154 GTLILIAPSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred CeEEEEECChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHh
Confidence 43344444444444444332 367999999999998888764
No 135
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.47 E-value=0.001 Score=58.22 Aligned_cols=138 Identities=15% Similarity=0.175 Sum_probs=77.2
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc------------------cCCceEEEEe
Q 037039 167 GRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE------------------HFELKIWIRV 228 (505)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------~F~~~~wv~v 228 (505)
|-+...+.|.+.+..+ .-...+.++|+.|+||+++|..+.+..--.. ..+...|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4556667777777543 2345688999999999999988765311111 1222333322
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 229 FEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 229 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
.... ......+.. .+...+ .++.=++|+|++.....+.+..|+..+....
T Consensus 76 ~~~~------------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp 130 (162)
T PF13177_consen 76 DKKK------------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP 130 (162)
T ss_dssp TTSS------------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT
T ss_pred cccc------------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC
Confidence 1110 011111122 233332 2456689999998888899999999999888
Q ss_pred CCcEEEEecCChH-HHHhhccCCCCCceeCCCCC
Q 037039 304 NGSKILVTTRSRK-VASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 304 ~gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~ 336 (505)
.++.+|++|.+.. +...+.+. ...+.+.+|+
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SR--c~~i~~~~ls 162 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSR--CQVIRFRPLS 162 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTT--SEEEEE----
T ss_pred CCEEEEEEECChHHChHHHHhh--ceEEecCCCC
Confidence 8899998888764 33333222 2445555543
No 136
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0016 Score=63.80 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++-++|+|++...+....+.|...+..-..++.+|+||.+.. +...+.+ +...+.+.+++.+++.+.+..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S--Rc~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS--RCQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh--hceeeeCCCcCHHHHHHHHHH
Confidence 3444557799988888899999999988667777887777653 3322222 236789999999999877764
No 137
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.45 E-value=0.00024 Score=63.18 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=49.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
.-+.|+|.+|+|||.||..+.+.. +...+ .+.|+.. . +++..+... . .... ....+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~----~L~~~l~~~------~-~~~~---~~~~~~~ 105 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------S----DLLDELKQS------R-SDGS---YEELLKR 105 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------H----HHHHHHHCC------H-CCTT---HCHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------C----ceecccccc------c-cccc---hhhhcCc
Confidence 468899999999999999998732 22222 3455543 2 333333210 0 1111 1122222
Q ss_pred HcCCceEEEEEecCCCCChhhHHH--HHHhhcCCCCCcEEEEecCCh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRN--LKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~--l~~~l~~~~~gs~iivTTR~~ 315 (505)
+. +-=||||||+-......|.. +...+...-....+||||...
T Consensus 106 -l~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 106 -LK-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp -HH-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred -cc-cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 22 23478899997554444432 333332211122588888654
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.0006 Score=75.44 Aligned_cols=138 Identities=14% Similarity=0.227 Sum_probs=76.6
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+...+..... ..+....++.++|++|+|||+||+.+++. ....-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 5689999999999888864321 11223357889999999999999999862 211111223333332111 1
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCC-ceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNG-KRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSK 307 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ 307 (505)
.....+.. .++...+.+.. ..+.+.++. ..-+|+||++...+...+..|...+..+. ..+.
T Consensus 641 ~~~~~LiG----~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~i 713 (857)
T PRK10865 641 HSVSRLVG----APPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTV 713 (857)
T ss_pred hhHHHHhC----CCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccE
Confidence 11112211 00000011111 112233322 23599999998778888888888776531 1233
Q ss_pred EEEecCC
Q 037039 308 ILVTTRS 314 (505)
Q Consensus 308 iivTTR~ 314 (505)
||+||..
T Consensus 714 iI~TSN~ 720 (857)
T PRK10865 714 VIMTSNL 720 (857)
T ss_pred EEEeCCc
Confidence 7777765
No 139
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.44 E-value=0.0043 Score=61.11 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=33.1
Q ss_pred chhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 169 DKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 169 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+...+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345567777776543 256789999999999999999998874
No 140
>PRK06921 hypothetical protein; Provisional
Probab=97.41 E-value=0.00086 Score=63.69 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=27.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcccccccc-CCceEEEEe
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEH-FELKIWIRV 228 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 228 (505)
...+.++|.+|+|||+||..+++ .+... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 45788999999999999999998 33333 334566653
No 141
>CHL00176 ftsH cell division protein; Validated
Probab=97.40 E-value=0.0014 Score=69.66 Aligned_cols=159 Identities=15% Similarity=0.250 Sum_probs=83.7
Q ss_pred CcccccchhHHHHHHHH---hcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELL---MQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.++.|.++.++++.+.+ ..... -+....+-+.++|++|+|||+||+.+++.. . .-|+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccH----HH
Confidence 67889887776665544 22210 011234568899999999999999998732 1 12333321 11
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC----------hhhHH----HHHHhhcC-
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED----------PEAWR----NLKSLLLG- 301 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~~~~----~l~~~l~~- 301 (505)
+ .... . +.....+...+.......+++|+||+++... ...++ .+...+..
T Consensus 252 f----~~~~---------~--g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 252 F----VEMF---------V--GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred H----HHHh---------h--hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 1 1111 0 0011223444555556788999999995321 12222 22222222
Q ss_pred -CCCCcEEEEecCChHHHH-hhccCC-CCCceeCCCCChhhhHHHHHHh
Q 037039 302 -GANGSKILVTTRSRKVAS-IMGTRG-GTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 -~~~gs~iivTTR~~~va~-~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+..||.||...+... .+-..+ -...+.+...+.++-.++|..+
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~ 365 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVH 365 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHH
Confidence 234556676776643322 121101 1245777777877777777654
No 142
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.39 E-value=0.00065 Score=68.74 Aligned_cols=152 Identities=13% Similarity=0.218 Sum_probs=83.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH-
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI- 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i- 241 (505)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.+.....-...|.... +..+ .+.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFS---TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHhcccCcceeee-eeec---CcHHhcCcHH
Confidence 45999999999999988754 3577999999999999999987322222332110 0001 111211111
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCC---ceEEEEEecCCCCChhhHHHHHHhhcCCC--C-------CcEEE
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNG---KRYLLVMDDVWNEDPEAWRNLKSLLLGGA--N-------GSKIL 309 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~---kr~LlVlDdvw~~~~~~~~~l~~~l~~~~--~-------gs~ii 309 (505)
+.... . .. .+.....+ .--++++|+++.........|...+.... . ..+++
T Consensus 88 i~~~~---------~----~g----~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfi 150 (498)
T PRK13531 88 IQALK---------D----EG----RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLL 150 (498)
T ss_pred Hhhhh---------h----cC----chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEE
Confidence 11100 0 00 01111112 11289999999888888888888774321 1 23566
Q ss_pred EecCChHHHH-------hhccCCCCCceeCCCCChhhh-HHHHHH
Q 037039 310 VTTRSRKVAS-------IMGTRGGTTGYNLQGLPFEDC-LSLFMK 346 (505)
Q Consensus 310 vTTR~~~va~-------~~~~~~~~~~~~l~~L~~~~~-~~Lf~~ 346 (505)
+++.++ +.. .+.-. .-.+.+++++.++. .+++..
T Consensus 151 v~ATN~-LPE~g~~leAL~DRF--liri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 151 VTASNE-LPEADSSLEALYDRM--LIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEECCC-CcccCCchHHhHhhE--EEEEECCCCCchHHHHHHHHc
Confidence 655553 221 11000 13578899985444 666654
No 143
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=0.0012 Score=69.74 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=40.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..++++..++.....+ ....+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999998754311 123357999999999999999999873
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00057 Score=72.77 Aligned_cols=249 Identities=15% Similarity=0.186 Sum_probs=133.0
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF---ELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 236 (505)
..++|.+..+..+.+.+..... +.+....+...+|+.|+|||-||+.+.. .-| +..+-+ |+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRI------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceee------chHH
Confidence 6799999999999998865332 2245567888899999999999998876 234 222222 3222
Q ss_pred HHHHH-HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceE-EEEEecCCCCChhhHHHHHHhhcCC----CC------
Q 037039 237 IMRKI-MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRY-LLVMDDVWNEDPEAWRNLKSLLLGG----AN------ 304 (505)
Q Consensus 237 ~~~~i-l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~----~~------ 304 (505)
....- ...|.. .++.--+.+. -..|-+..+.++| +|.||.+...+++..+.|...|.++ +.
T Consensus 560 y~EkHsVSrLIG----aPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 560 YMEKHSVSRLIG----APPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHHHHHhC----CCCCCceecc---ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEec
Confidence 22221 111110 1111111122 2234555666777 8889999888888888888888765 22
Q ss_pred -CcEEEEecCChH--HHHhhccCCCCCceeCCC-CChhhhHHHHHHhHHhhhhccCCCChHHHHHHHcccccccccc-CC
Q 037039 305 -GSKILVTTRSRK--VASIMGTRGGTTGYNLQG-LPFEDCLSLFMKFRTLGSVLCGKTDKRDWEFVRDNEIWQLEQM-ER 379 (505)
Q Consensus 305 -gs~iivTTR~~~--va~~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~-~~ 379 (505)
.+-||+||.--. +.... . . .. -..+...+. +-..+.....++-...+ +... .+... ..
T Consensus 633 rNtiIImTSN~Gs~~i~~~~--~---~----~~~~~~~~~~~~------v~~~l~~~F~PEFLNRi-d~II-~F~~L~~~ 695 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDA--D---G----DDFADKEALKEA------VMEELKKHFRPEFLNRI-DEII-PFNPLSKE 695 (786)
T ss_pred ceeEEEEecccchHHHHhhc--c---c----cccchhhhHHHH------HHHHHHhhCCHHHHhhc-ccEE-eccCCCHH
Confidence 355666664321 11110 0 0 00 001111111 11112222222222221 1111 11111 12
Q ss_pred cchhHHHhhHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHcCCccc
Q 037039 380 GILPTLRLSYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYLKELLSRFFFQD 455 (505)
Q Consensus 380 ~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~ 455 (505)
.+..+...-++.|...++ -.++.+.-..-+.-|+++--..+..|...+...-++.+...+..-+|..
T Consensus 696 ~l~~Iv~~~L~~l~~~L~---------~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g 762 (786)
T COG0542 696 VLERIVDLQLNRLAKRLA---------ERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFG 762 (786)
T ss_pred HHHHHHHHHHHHHHHHHH---------hCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555544433 3577777778888888876666666665666666677766666666653
No 145
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.002 Score=63.41 Aligned_cols=144 Identities=12% Similarity=0.162 Sum_probs=84.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc-------------------cCCceE
Q 037039 164 DIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE-------------------HFELKI 224 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 224 (505)
.++|-+.....+..+..... .-...+.++|++|+||||+|..+.+...-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45677777888888887431 2233588999999999999998886321111 123344
Q ss_pred EEEecCCCCH---HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcC
Q 037039 225 WIRVFEDFGE---RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG 301 (505)
Q Consensus 225 wv~v~~~~~~---~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 301 (505)
.+..++.... .+..+++.+.... . ...++.-++++|++.......-..+...+..
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~---------~-------------~~~~~~kviiidead~mt~~A~nallk~lEe 135 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSE---------S-------------PLEGGYKVVIIDEADKLTEDAANALLKTLEE 135 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhcc---------C-------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhcc
Confidence 4444433331 2222222222100 0 0035678999999987777777778888877
Q ss_pred CCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCC
Q 037039 302 GANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGL 335 (505)
Q Consensus 302 ~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L 335 (505)
....+.+|++|... .+...+.+ ....+.+.+.
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc~~i~f~~~ 168 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RCQRIRFKPP 168 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cceeeecCCc
Confidence 77788888888733 33332222 2244666653
No 146
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.34 E-value=0.0018 Score=67.60 Aligned_cols=159 Identities=14% Similarity=0.224 Sum_probs=81.4
Q ss_pred CcccccchhHHHHHHHHh---cCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELLM---QTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.+++|.+..++++.+.+. .... .+....+-+.++|++|+|||+||+.+++.. ... ++.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 678998887776665443 1100 012234458899999999999999998732 212 222221 11
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC----------hhhHHH----HHHhhcC-
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED----------PEAWRN----LKSLLLG- 301 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~~~~~----l~~~l~~- 301 (505)
+ .... .+ .....+...+.......+.+|+||++.... ...+.. +...+..
T Consensus 124 ~----~~~~---------~g--~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 124 F----VEMF---------VG--VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred H----HHHH---------hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 1 1111 00 111223344444445677899999995310 112222 2222221
Q ss_pred -CCCCcEEEEecCChH-HHHhhccCC-CCCceeCCCCChhhhHHHHHHh
Q 037039 302 -GANGSKILVTTRSRK-VASIMGTRG-GTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 -~~~gs~iivTTR~~~-va~~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+..||.||.... +-..+-..+ -...+.+...+.++-.++|...
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 223445666665543 212111101 1245778888877777777654
No 147
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.34 E-value=0.0011 Score=61.28 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=29.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRV 228 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 228 (505)
-.++|+|..|+|||||...+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4677999999999999999887 46678877776643
No 148
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.32 E-value=0.00074 Score=65.96 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=54.4
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
..+.++|.+|+|||+||..+++. ....--.++|+++ .+++..+...- ... ..+....+ +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~------~~l~~~l~~~~---------~~~---~~~~~~~~-~ 242 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA------DELIEILREIR---------FNN---DKELEEVY-D 242 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH------HHHHHHHHHHH---------hcc---chhHHHHH-H
Confidence 56889999999999999999983 3332234556543 22333322211 000 01111112 2
Q ss_pred HcCCceEEEEEecCCCCChhhH--HHHHHhhcCC-CCCcEEEEecCCh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAW--RNLKSLLLGG-ANGSKILVTTRSR 315 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTTR~~ 315 (505)
.+. .-=||||||+.......| ..|...+... ..+..+||||...
T Consensus 243 ~l~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 243 LLI-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred Hhc-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 222 124899999965433333 3344444332 2345688888643
No 149
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.002 Score=58.31 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=73.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|.+...+.+++-...-.. .....-|.+||.-|+|||+|++.+.+ .+....-. -|.|... ....+-.|+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--dl~~Lp~l~ 131 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--DLATLPDLV 131 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--HHhhHHHHH
Confidence 6799999999988765433221 23345677999999999999999988 44333322 2222210 001111122
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCC-CCChhhHHHHHHhhcCC---CCCcEEEEecCCh
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVW-NEDPEAWRNLKSLLLGG---ANGSKILVTTRSR 315 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~---~~gs~iivTTR~~ 315 (505)
+.|+. ...||+|..||+. +.+...+..|+..+..+ .+...++..|.|.
T Consensus 132 -----------------------~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 132 -----------------------ELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------------------HHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 22221 3679999999995 44667888999988764 3444455555444
No 150
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00086 Score=72.66 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=69.6
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.|.+.+..... ..+.....+.++|++|+|||+||+.+.... .. ..+.+..++-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----
Confidence 4579999999999888763211 112335678999999999999999997732 21 22233333221111
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC-CceEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN-GKRYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
. ...+.. .++...+.+.. ..+.+.+. ....+|+||++...+.+.++.|...+..+
T Consensus 529 ~-~~~LiG----~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 529 T-VSRLIG----APPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred c-HHHHcC----CCCCccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1 112211 00000011111 12223333 33469999999888888888888877643
No 151
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.24 E-value=0.00083 Score=54.26 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.0
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876
No 152
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.18 E-value=0.00017 Score=61.41 Aligned_cols=90 Identities=28% Similarity=0.286 Sum_probs=50.3
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL 272 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L 272 (505)
|.++|++|+|||+||+.++.. ... ...-+.++...+..++....--. . .........+...+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~--~-------~~~~~~~~~l~~a~~--- 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS--N-------GQFEFKDGPLVRAMR--- 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET---T-------TTTCEEE-CCCTTHH---
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec--c-------ccccccccccccccc---
Confidence 569999999999999999872 211 22335666666666543321110 0 000011111111111
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhcC
Q 037039 273 NGKRYLLVMDDVWNEDPEAWRNLKSLLLG 301 (505)
Q Consensus 273 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 301 (505)
+..++|||++...+...+..|...+..
T Consensus 65 --~~~il~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 65 --KGGILVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp --EEEEEEESSCGG--HHHHHTTHHHHSS
T ss_pred --ceeEEEECCcccCCHHHHHHHHHHHhh
Confidence 899999999976666777777776654
No 153
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.00079 Score=59.49 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=24.1
Q ss_pred EEEEEecCCChHHHHHHHHhcccccc-ccCCceEE
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVK-EHFELKIW 225 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 225 (505)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999987632221 13455555
No 154
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.12 E-value=0.00034 Score=57.85 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 155
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.10 E-value=0.001 Score=59.99 Aligned_cols=133 Identities=19% Similarity=0.333 Sum_probs=61.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC------CCHHHHHHH
Q 037039 167 GRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED------FGERQIMRK 240 (505)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~------~~~~~~~~~ 240 (505)
.+..+-...++.|.. ..++.+.|++|.|||.||....-+.-....|+..+++.-.-+ +-+-++-.+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 344555666666752 358999999999999999887765444577887777642211 111111111
Q ss_pred H---HHHHHHhhhhccccCCCCCchHHHHHHH---------HHcCCc---eEEEEEecCCCCChhhHHHHHHhhcCCCCC
Q 037039 241 I---MELIIEQIMTNYVFQGDLNTHRLQQILR---------DCLNGK---RYLLVMDDVWNEDPEAWRNLKSLLLGGANG 305 (505)
Q Consensus 241 i---l~~l~~~~~~~~~~~~~~~~~~l~~~l~---------~~L~~k---r~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 305 (505)
+ +.-+...+. .-.....+...+. .+++|+ ..+||+|++.+....++.. .+...+.|
T Consensus 76 ~~p~~~p~~d~l~------~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---ilTR~g~~ 146 (205)
T PF02562_consen 76 MEPYLRPIYDALE------ELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---ILTRIGEG 146 (205)
T ss_dssp --TTTHHHHHHHT------TTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HHTTB-TT
T ss_pred HHHHHHHHHHHHH------HHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HHcccCCC
Confidence 1 111110000 0000111112221 234554 4699999997666555544 45556679
Q ss_pred cEEEEecCChH
Q 037039 306 SKILVTTRSRK 316 (505)
Q Consensus 306 s~iivTTR~~~ 316 (505)
||+|++--..+
T Consensus 147 skii~~GD~~Q 157 (205)
T PF02562_consen 147 SKIIITGDPSQ 157 (205)
T ss_dssp -EEEEEE----
T ss_pred cEEEEecCcee
Confidence 99999865443
No 156
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.07 E-value=0.00063 Score=57.82 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=64.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc-cccCCceEEEEecCCCCHHHHHHHHHHH
Q 037039 166 IGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV-KEHFELKIWIRVFEDFGERQIMRKIMEL 244 (505)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~il~~ 244 (505)
||....++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|...- ...
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh--------------
Confidence 577777777877775542 22345679999999999999998874321 11221100 000
Q ss_pred HHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC-CCCcEEEEecCCh
Q 037039 245 IIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG-ANGSKILVTTRSR 315 (505)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTTR~~ 315 (505)
.+ . +.+.. .+.--|+|+|+..-+.+....|...+... ....|+|.||...
T Consensus 60 --------------~~-~---~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 --------------LP-A---ELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------TC-H---HHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------Cc-H---HHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 1 11111 14456789999877777777788777643 5678999998754
No 157
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.06 E-value=0.0027 Score=58.15 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=52.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchH---H
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR---L 264 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~---l 264 (505)
+.-.++.|+|++|+|||+++.++... ....-..++|++... ++...+.. +..................+..+ .
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45689999999999999999888763 223346788998865 55544333 33322111000000001111112 3
Q ss_pred HHHHHHHcCC-ceEEEEEecCC
Q 037039 265 QQILRDCLNG-KRYLLVMDDVW 285 (505)
Q Consensus 265 ~~~l~~~L~~-kr~LlVlDdvw 285 (505)
...+...+.. +.-+||+|.+-
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4444444443 45689999983
No 158
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0017 Score=61.12 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=47.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
+..-+.++|.+|+|||.||..+.+. +...=-.+.+++ ..+++.++..... . ......|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~----------~----~~~~~~l 161 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFD----------E----GRLEEKL 161 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHh----------c----CchHHHH
Confidence 3456889999999999999999994 333222444553 3445555544441 1 1122223
Q ss_pred HHHcCCceEEEEEecCCCCChhhHH
Q 037039 269 RDCLNGKRYLLVMDDVWNEDPEAWR 293 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~~~~~~~ 293 (505)
.+.++ +-=||||||+-......|.
T Consensus 162 ~~~l~-~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 162 LRELK-KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred HHHhh-cCCEEEEecccCccCCHHH
Confidence 33222 2348999999754444443
No 159
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.02 E-value=0.0023 Score=55.70 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=27.9
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCC
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDF 232 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 232 (505)
++.|+|.+|+||||++..+... ....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3679999999999999999873 22233456777665543
No 160
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.01 E-value=0.0056 Score=54.63 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEec--CCCCHHHHHHH------HHHHHHHhhhhccccCCCCCch
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVF--EDFGERQIMRK------IMELIIEQIMTNYVFQGDLNTH 262 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~--~~~~~~~~~~~------il~~l~~~~~~~~~~~~~~~~~ 262 (505)
.+++|+|..|.|||||.+.++.-. ....+.+++.-. ...+....... +++.+.-.... .......+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~-~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLA-DRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHh-cCCcccCCHH
Confidence 589999999999999999998732 234455544211 11222222111 12222110000 0011122222
Q ss_pred H-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CC-CcEEEEecCChHHHHh
Q 037039 263 R-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-AN-GSKILVTTRSRKVASI 320 (505)
Q Consensus 263 ~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~va~~ 320 (505)
+ ..-.+.+.+-..+-++++|+.-. .|......+...+... .. |..||++|.+......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2 22335556666788899999742 3445555565555432 22 6778888888765533
No 161
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.00 E-value=0.0018 Score=67.83 Aligned_cols=44 Identities=34% Similarity=0.460 Sum_probs=36.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 57999999999998876532 234567999999999999999976
No 162
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.98 E-value=0.0036 Score=68.65 Aligned_cols=50 Identities=34% Similarity=0.314 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|.+..++.|.+.+...-. -+-...+-+.++|++|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 5688999999999887643210 0012345688999999999999999987
No 163
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.00092 Score=61.93 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 168 RDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|..-+++|.+.+.... ..++.+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5666778888776532 35678999999999999999999987
No 164
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.93 E-value=0.0081 Score=65.92 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=83.3
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|.+..++.|.+.+...-. .+-...+-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 5678888888888776642110 01123455789999999999999999983 22222 22221 1
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------C----hhhHHHHHHhhcC--
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------D----PEAWRNLKSLLLG-- 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------~----~~~~~~l~~~l~~-- 301 (505)
+ ++... .+ .....+...+...-...+.+|+||++... + ......+...+..
T Consensus 522 ~----l~~~~---------vG--ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 522 E----ILSKW---------VG--ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred H----Hhhcc---------cC--cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 1 11111 00 01112333344444567899999998521 0 0122334444432
Q ss_pred CCCCcEEEEecCChHHHHhhccC-C-CCCceeCCCCChhhhHHHHHH
Q 037039 302 GANGSKILVTTRSRKVASIMGTR-G-GTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 302 ~~~gs~iivTTR~~~va~~~~~~-~-~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
...+--||.||...+.....-.. + -...+.+...+.++-.++|..
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~ 633 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKI 633 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHH
Confidence 12344556666555433221111 1 124577777788877777754
No 165
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.93 E-value=0.0069 Score=62.98 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=88.0
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc------ccccCCceEEEEecCCCCH
Q 037039 161 VPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR------VKEHFELKIWIRVFEDFGE 234 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~v~~~~~~ 234 (505)
+|..+-+|+.+..+|-.++...-.. ...-..+-|.|.+|.|||..+..|.+... -...|+ .+.++...-..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCH
Confidence 5567889999999999888654321 13334889999999999999999987422 112353 334555555678
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC-----CceEEEEEecCCCCChhhHHHHHHhhcC-CCCCcEE
Q 037039 235 RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN-----GKRYLLVMDDVWNEDPEAWRNLKSLLLG-GANGSKI 308 (505)
Q Consensus 235 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~i 308 (505)
.++...|...+ ..+........+.|..+.. .+.+++++|++...-...-+-+...|.. ..++||+
T Consensus 472 ~~~Y~~I~~~l---------sg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKL 542 (767)
T KOG1514|consen 472 REIYEKIWEAL---------SGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKL 542 (767)
T ss_pred HHHHHHHHHhc---------ccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCce
Confidence 88888888887 3333333334445555543 4578999998742111111233444443 4567887
Q ss_pred EEec
Q 037039 309 LVTT 312 (505)
Q Consensus 309 ivTT 312 (505)
+|.+
T Consensus 543 vvi~ 546 (767)
T KOG1514|consen 543 VVIA 546 (767)
T ss_pred EEEE
Confidence 7644
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.016 Score=56.47 Aligned_cols=71 Identities=8% Similarity=0.029 Sum_probs=54.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++=++|+|++........+.|...+..-.+++.+|++|.+. .+...+.+ +...+.+.+++.++..+.+..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S--RC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS--RCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh--hceEEeCCCCCHHHHHHHHHH
Confidence 566688899998888889999999999877788888777665 44333222 236789999999998877765
No 167
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.0018 Score=58.82 Aligned_cols=113 Identities=16% Similarity=0.241 Sum_probs=61.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
.+|.|+|+.|+||||++..+.. ....+....++. +.++.. ....-...+..+ ...+.+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E---~~~~~~~~~i~q------~~vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIE---FVHESKRSLINQ------REVGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCcc---ccccCccceeee------cccCCCccCHHHHHHH
Confidence 4789999999999999988776 233333344443 222111 100000000000 0011122235666777
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
.|...+=+|++|.+. +.+....+.... ..|..++.|+...++...
T Consensus 70 aLr~~pd~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 70 ALRQDPDVILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred HhcCCcCEEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 777777799999994 344444433333 245568888877665543
No 168
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.92 E-value=0.018 Score=54.81 Aligned_cols=178 Identities=20% Similarity=0.216 Sum_probs=98.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEecCCCCH-HHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF-ELKIWIRVFEDFGE-RQIMRK 240 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~-~~~~~~ 240 (505)
..++|-.++...+-.++....- ......+.|+|+.|.|||+|...+..+ .+.| +..+-|........ +-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 4588888888888777754321 122345779999999999998887775 2233 23344455444333 345777
Q ss_pred HHHHHHHhhhhccccCCCCCchHHHHHHHHHcC------CceEEEEEecCCCCChhhHHHH-HHhhc----CCCCCcEEE
Q 037039 241 IMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN------GKRYLLVMDDVWNEDPEAWRNL-KSLLL----GGANGSKIL 309 (505)
Q Consensus 241 il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~------~kr~LlVlDdvw~~~~~~~~~l-~~~l~----~~~~gs~ii 309 (505)
|..++..+........ .+-.+-...|-..|+ +-+.++|+|.++-.....-+.+ ...|. ...|-|-|-
T Consensus 99 I~rql~~e~~~~~k~~--gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig 176 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSF--GSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIG 176 (408)
T ss_pred HHHHHHHHHhhhheee--cccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEE
Confidence 7777755443221111 122222233333443 2368889988753222111222 22222 235567777
Q ss_pred EecCChHH---HHhhccCCCC-CceeCCCCChhhhHHHHHHh
Q 037039 310 VTTRSRKV---ASIMGTRGGT-TGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 vTTR~~~v---a~~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+|||-.-+ .....+.-.. .++-++.++.++...++.+.
T Consensus 177 ~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 177 VTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred eeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 89986532 2222222111 35677888899999988875
No 169
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0055 Score=56.97 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=72.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC-----CCCHHHHHHHHHHHHHHhhhhccccCCCCCchHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE-----DFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRL 264 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 264 (505)
-.+++|||..|+|||||++.+.. ....-.+.+++.-.+ .....+...++++.++..-..-...+...+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 36899999999999999999986 223333444433111 1112223334444432110000011112233332
Q ss_pred H-HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC--CCCCcEEEEecCChHHHHhhcc
Q 037039 265 Q-QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG--GANGSKILVTTRSRKVASIMGT 323 (505)
Q Consensus 265 ~-~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~va~~~~~ 323 (505)
+ -.+.+.|.-++-|||.|..-+. |...-.++...+.+ ...|-..+..|-+-.++..++.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2 3466778889999999997432 32233344444433 2346678888888888887754
No 170
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.90 E-value=0.012 Score=50.79 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=62.6
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC---CCHHHHHHHHHHHHHH-hhhhccccCCCCCch----
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED---FGERQIMRKIMELIIE-QIMTNYVFQGDLNTH---- 262 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~---- 262 (505)
..|-|++..|.||||+|-...- +...+=-.+.++...+. .....++..+ ..+.- ...............
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678889999999999977654 22222223334333332 3333333332 00000 000000000000011
Q ss_pred --HHHHHHHHHcCCce-EEEEEecCCC---CChhhHHHHHHhhcCCCCCcEEEEecCChH
Q 037039 263 --RLQQILRDCLNGKR-YLLVMDDVWN---EDPEAWRNLKSLLLGGANGSKILVTTRSRK 316 (505)
Q Consensus 263 --~l~~~l~~~L~~kr-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 316 (505)
...+..++.+.... =|||||++-. ...-..+.+...+.....+.-+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233444444444 4999999842 122345667777777777888999999864
No 171
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0017 Score=66.39 Aligned_cols=168 Identities=14% Similarity=0.199 Sum_probs=97.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+.-...|.+.+.... -..-....|+-|+||||+|+.+....-.. -+ ....++.....-++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhh
Confidence 678999999999999997542 23455678999999999998887521111 11 1122233222222222
Q ss_pred HHHHHhh-hhccccCCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-h
Q 037039 243 ELIIEQI-MTNYVFQGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS-R 315 (505)
Q Consensus 243 ~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~ 315 (505)
..-..++ ..+.... ...+-...|.+.. +++.=+.|+|.|+-.....|+.|...+..-....+.|+.|.+ .
T Consensus 84 ~g~~~DviEiDaASn---~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 84 EGSLIDVIEIDAASN---TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred cCCcccchhhhhhhc---cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 2100000 0000000 1111122233322 345558899999888889999999999876666666655554 4
Q ss_pred HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 316 KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 316 ~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+...+-+ +...|.++.++.++-...+...
T Consensus 161 Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i 190 (515)
T COG2812 161 KIPNTILS--RCQRFDFKRLDLEEIAKHLAAI 190 (515)
T ss_pred cCchhhhh--ccccccccCCCHHHHHHHHHHH
Confidence 44332222 2367899999999877776654
No 172
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.88 E-value=0.0019 Score=58.05 Aligned_cols=110 Identities=17% Similarity=0.301 Sum_probs=63.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF-ELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 241 (505)
.++||-++.++.+.-...+ .+.+-+.|.||+|+||||-+..+++.. ....| +.+.-.++|+.-.+.-+-..|
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHH
Confidence 6899999999988766653 456778899999999999776666521 11112 333444444433322221111
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHc-CCceEEEEEecCCCCChhhHHHHHHhhc
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCL-NGKRYLLVMDDVWNEDPEAWRNLKSLLL 300 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 300 (505)
+.+.. -+-.| .++.-.+|||..++.....-+.+.....
T Consensus 100 -K~FAQ--------------------~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 100 -KMFAQ--------------------KKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred -HHHHH--------------------hhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 11100 00011 2555689999998766555556665544
No 173
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.87 E-value=0.0047 Score=57.01 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=31.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFG 233 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 233 (505)
..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 44578999999999999999998763 222233567776554443
No 174
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.87 E-value=0.00066 Score=69.67 Aligned_cols=50 Identities=20% Similarity=0.388 Sum_probs=41.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.++.+++|++.|.....+....-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 47899999999999999443222245568999999999999999999987
No 175
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.038 Score=53.71 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=53.4
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++=++|+|++........+.|...+..-.+++.+|++|.+. .+...+.+. ...+.+.+++.++..+.+..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR--Cq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR--CQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--ceeEeCCCCCHHHHHHHHHH
Confidence 445688999998878889999999998877778777776654 444433332 36789999999998877764
No 176
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.85 E-value=0.0067 Score=53.72 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=61.0
Q ss_pred eEEEEEecCCChHHHHHHHHhccc---cccc---cCC--ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCch
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQ---RVKE---HFE--LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTH 262 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~---~~~~---~F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 262 (505)
.+++|+|+.|+|||||.+.+..+. .+.. .|. ...|+ .+ .+.++.+.-............+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 589999999999999999886321 1111 111 12222 11 233333321000000011112222
Q ss_pred H-HHHHHHHHcCCc--eEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHH
Q 037039 263 R-LQQILRDCLNGK--RYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVAS 319 (505)
Q Consensus 263 ~-l~~~l~~~L~~k--r~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~ 319 (505)
. ..-.+...+-.+ +=+++||..-. .+....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2 222344455555 67888898743 3555555555555432 24677889998887654
No 177
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.0062 Score=56.51 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=51.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHH-HHHhhhhccccCCCCCchH---
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMEL-IIEQIMTNYVFQGDLNTHR--- 263 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~~~--- 263 (505)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+ .++... +.. ...+.......+..+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEE-LLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH-HHHHhhChHh-HhhCeEEEeCCCHHHHHH
Confidence 44579999999999999999998763 32334577888876 5554433 233322 100 000000011111112
Q ss_pred HHHHHHHHcCCceEEEEEecC
Q 037039 264 LQQILRDCLNGKRYLLVMDDV 284 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdv 284 (505)
..+.+...+..+.-++|+|.+
T Consensus 96 ~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 96 AIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHHhcccEEEEeCc
Confidence 233344444456679999998
No 178
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.011 Score=59.44 Aligned_cols=135 Identities=23% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
...+..+.+.|++|+|||+||..+.. ...|+.+--++..+-.. ..+......+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG---------------------~sEsaKc~~i~k 589 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIG---------------------LSESAKCAHIKK 589 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccC---------------------ccHHHHHHHHHH
Confidence 35577788999999999999999976 35677554332111000 000001111334
Q ss_pred HHHHHcCCceEEEEEecCCCC----------ChhhHHHHHHhhcCC-CCCcEEE--EecCChHHHHhhccCC-CCCceeC
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE----------DPEAWRNLKSLLLGG-ANGSKIL--VTTRSRKVASIMGTRG-GTTGYNL 332 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~----------~~~~~~~l~~~l~~~-~~gs~ii--vTTR~~~va~~~~~~~-~~~~~~l 332 (505)
.+....+..--.||+||+... .....+.|.-.|... ..|-|.+ -||....+.+.|+... -...+.+
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 455556677789999998421 112333444444432 2344544 4777788888776421 1145777
Q ss_pred CCCCh-hhhHHHHHH
Q 037039 333 QGLPF-EDCLSLFMK 346 (505)
Q Consensus 333 ~~L~~-~~~~~Lf~~ 346 (505)
+.++. ++..+.++.
T Consensus 670 pnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEE 684 (744)
T ss_pred CccCchHHHHHHHHH
Confidence 77776 555555543
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.81 E-value=0.0059 Score=55.24 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=51.6
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
++..|.|++|.||||+.+.+.... ... ...+.+..... .....+.+.... +...+...+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~--~~~-g~~v~~~apT~----~Aa~~L~~~~~~------------~a~Ti~~~l~~ 79 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEAL--EAA-GKRVIGLAPTN----KAAKELREKTGI------------EAQTIHSFLYR 79 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHH--HHT-T--EEEEESSH----HHHHHHHHHHTS-------------EEEHHHHTTE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHH--HhC-CCeEEEECCcH----HHHHHHHHhhCc------------chhhHHHHHhc
Confidence 678899999999999998887632 222 12232222211 122222222210 00001111111
Q ss_pred Hc---------CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecC
Q 037039 271 CL---------NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTR 313 (505)
Q Consensus 271 ~L---------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR 313 (505)
.. ..+.-+||+|++...+...+..|...... .|+++|+.=-
T Consensus 80 ~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 80 IPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp ECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred CCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 10 12345999999987777777777777665 4678886543
No 180
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0063 Score=63.37 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=42.7
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 161 VPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.+-+|.++-+++|++++.-..-.++.+-++++.+|++|+|||++|+.|+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 4467899999999999998644322345568999999999999999999987
No 181
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.80 E-value=0.0036 Score=59.04 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=30.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFG 233 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~ 233 (505)
+-++|+|.+|+|||||++.+++ .++.+|+ .++++-+.+...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcH
Confidence 5688999999999999999998 4554564 455666665443
No 182
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.016 Score=56.66 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=48.4
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++-++|+|++...+...-+.+...+.....++.+|++|.+.. +...+.+ ....+.+.+++.+++...+..
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 3444556788887777777888888876555676777777654 4433222 236788999999998777754
No 183
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.017 Score=49.40 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=59.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchH-HHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR-LQQILR 269 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-l~~~l~ 269 (505)
.+++|+|..|.|||||++.+..-. ....+.+|+.-.. .+ ..... .+..+ ..-.|.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i------~~~~~--lS~G~~~rv~la 82 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KI------GYFEQ--LSGGEKMRLALA 82 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EE------EEEcc--CCHHHHHHHHHH
Confidence 589999999999999999998732 2233444432100 00 00000 11111 222345
Q ss_pred HHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 270 DCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
..+-.++-++++|+.-. .|......+...+... +..||++|.+.+....
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 55566777889999742 3555555665555543 2468888887765543
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0053 Score=62.75 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=63.2
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.++=|.+..+.++.+++..-.. -+-..++=|.++|++|+|||.||+.+.+.. .-. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch-----
Confidence 6788899999988887754211 012345667899999999999999999843 222 3333321
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCC
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVW 285 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw 285 (505)
+|+..+ .+.++..+.+.+.+.-..-++++++|++.
T Consensus 258 ---eivSGv-----------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGV-----------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhccc-----------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222 11233336666666667789999999995
No 185
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00098 Score=69.33 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=89.6
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHH
Q 037039 161 VPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRK 240 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 240 (505)
.+.+-+|.++-+++|+++|.-..-...-+-+++++||++|+|||+|++.++. .....| +=++++.--|..++--
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRG- 394 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRG- 394 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcc-
Confidence 3467899999999999998543211133457999999999999999999997 444444 1223333333222100
Q ss_pred HHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCCh----hhHHHHHHhhcC-CCC-----------
Q 037039 241 IMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDP----EAWRNLKSLLLG-GAN----------- 304 (505)
Q Consensus 241 il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~-~~~----------- 304 (505)
....--+.=...+.+.+++. +.+.=|++||.++.... +--..|+..|.. .++
T Consensus 395 -----------HRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 395 -----------HRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred -----------ccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 00000011122233444433 45677899999863211 111122222221 000
Q ss_pred -CcE-EEEecCCh-H-H-HHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 305 -GSK-ILVTTRSR-K-V-ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 305 -gs~-iivTTR~~-~-v-a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
=|. +.|||-|. + + +..+ ++..++++.+-+++|-.++-+++
T Consensus 463 DLS~VmFiaTANsl~tIP~PLl---DRMEiI~lsgYt~~EKl~IAk~~ 507 (782)
T COG0466 463 DLSKVMFIATANSLDTIPAPLL---DRMEVIRLSGYTEDEKLEIAKRH 507 (782)
T ss_pred chhheEEEeecCccccCChHHh---cceeeeeecCCChHHHHHHHHHh
Confidence 133 34555433 2 1 1222 33478899999999877776655
No 186
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.74 E-value=0.011 Score=60.90 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=79.5
Q ss_pred CcccccchhHHHHHHHHhcC----CCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQT----SDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 238 (505)
.++.|.+..++.+.+....- ...+-..++-|.++|++|+|||.+|+.+.+. ..-.| +.++. ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~-----~~l~~----~~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL-----LRLDV----GK-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE-----EEEEh----HH--
Confidence 56788777666665432110 0011234567889999999999999999883 22221 11110 00
Q ss_pred HHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------Chh----hHHHHHHhhcCCCCCc
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------DPE----AWRNLKSLLLGGANGS 306 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------~~~----~~~~l~~~l~~~~~gs 306 (505)
+.... .+ .....+.+.+...-...+++|++|++... +.. ....+...+.....+-
T Consensus 295 --l~~~~---------vG--ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V 361 (489)
T CHL00195 295 --LFGGI---------VG--ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPV 361 (489)
T ss_pred --hcccc---------cC--hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCce
Confidence 00000 00 01112333333333457899999998521 111 1122233333333344
Q ss_pred EEEEecCChH-HHHhh-ccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 307 KILVTTRSRK-VASIM-GTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 307 ~iivTTR~~~-va~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
-||.||.+.+ +-..+ ...--...+.++.-+.++-.++|..+
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~ 404 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIH 404 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 4566775543 22222 11001145778777888888888754
No 187
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.042 Score=52.94 Aligned_cols=155 Identities=22% Similarity=0.235 Sum_probs=85.5
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++=|-++++++|.+...-+-. -+-..++=|.+||++|.|||-||++|+| +....| +.+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 6677899999999887643221 0124566788999999999999999999 444334 433321
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC-CceEEEEEecCCC-----------CChhhHH---HHHHhhc
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN-GKRYLLVMDDVWN-----------EDPEAWR---NLKSLLL 300 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdvw~-----------~~~~~~~---~l~~~l~ 300 (505)
++.+.. .++ ...+...+.+.-+ ..+..|.+|.++. .+.+.-. +|...+.
T Consensus 220 ----ElVqKY---------iGE---GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 220 ----ELVQKY---------IGE---GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred ----HHHHHH---------hcc---chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 222222 111 1223444444444 4589999999852 1222222 2333333
Q ss_pred CC--CCCcEEEEecCChHHHHhh--ccCCCCCceeCCCCChhhhH-HHHH
Q 037039 301 GG--ANGSKILVTTRSRKVASIM--GTRGGTTGYNLQGLPFEDCL-SLFM 345 (505)
Q Consensus 301 ~~--~~gs~iivTTR~~~va~~~--~~~~~~~~~~l~~L~~~~~~-~Lf~ 345 (505)
.+ ...-|||..|...++.... ...--.+.+++. |+..++. ++|.
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~ 332 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILK 332 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHH
Confidence 32 2356888887665543221 111112456666 5555544 4443
No 188
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.70 E-value=0.015 Score=51.52 Aligned_cols=102 Identities=17% Similarity=0.077 Sum_probs=58.6
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEE------ecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchH-
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIR------VFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR- 263 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~- 263 (505)
.+++|+|+.|+|||||.+.+..-. ....+.+++. +.+... .+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-------------------------LSgGq~ 77 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-------------------------LSGGEL 77 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-------------------------CCHHHH
Confidence 589999999999999999988632 2223333321 111110 11111
Q ss_pred HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CC-CcEEEEecCChHHHHh
Q 037039 264 LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-AN-GSKILVTTRSRKVASI 320 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~va~~ 320 (505)
..-.+...+..++-+++||.--. .|......+...+... .. +..||++|.+......
T Consensus 78 qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 78 QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 22335555666778899999743 2444444455544431 22 3568888887765543
No 189
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.70 E-value=0.017 Score=51.45 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=62.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccc-c--------CCCCCc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYV-F--------QGDLNT 261 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~-~--------~~~~~~ 261 (505)
.+++|.|..|+|||||++.+..-. ....+.+++.-. +.......+-..+.. ...... . ....+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~-~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISV-LNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEE-EccCCeeecccHHHhhcccCCH
Confidence 589999999999999999998632 122344433211 111110011000000 000000 0 111122
Q ss_pred hH-HHHHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 262 HR-LQQILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 262 ~~-l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
.+ ..-.|.+.+-.++=+++||+.... |....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22 223345556677788999998532 44444445555443334677888888887654
No 190
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.69 E-value=0.027 Score=50.49 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=41.1
Q ss_pred HHHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHhhcc
Q 037039 265 QQILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG-GANGSKILVTTRSRKVASIMGT 323 (505)
Q Consensus 265 ~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~~~~ 323 (505)
.-.|.+.|.-++-++.||..-+. |++.-.++...+.. ...|-..|+.|.....|..+..
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh
Confidence 34577788888899999998543 55555555555544 3467778888888887776543
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.015 Score=57.01 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=53.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++-++|+|++...+...++.|...+..-.+++.+|++|.+ ..+...+.+ +...+.+.+++.++..+.+..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHH
Confidence 45568899999888889999999999987777876666655 444433332 236789999999998888765
No 192
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.018 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+.++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999876
No 193
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.65 E-value=0.011 Score=54.88 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=53.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccC------CceEEEEecCCCCHHHHHHHHHHHHHHhh---hhccccCCC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF------ELKIWIRVFEDFGERQIMRKIMELIIEQI---MTNYVFQGD 258 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~~~~~il~~l~~~~---~~~~~~~~~ 258 (505)
..-.++.|+|.+|+|||+||..+.... .... ..++|+.....++...+ .++.+...... .........
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeC
Confidence 445799999999999999999887532 1222 46688887776665443 33333321110 000001111
Q ss_pred CCchHHHHHHHHHc----CCceEEEEEecCC
Q 037039 259 LNTHRLQQILRDCL----NGKRYLLVMDDVW 285 (505)
Q Consensus 259 ~~~~~l~~~l~~~L----~~kr~LlVlDdvw 285 (505)
.+..++...+.... ..+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 22233444444433 2345699999984
No 194
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.011 Score=64.22 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=75.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCC--CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKS--ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRK 240 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 240 (505)
..++|.++.+..|.+.+.....+-. .....+.+.|+.|+|||-||+.+.. .+-+..+ .+|++ |..+...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~--~~Iri----Dmse~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEE--NFIRL----DMSEFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCcc--ceEEe----chhhhhh-
Confidence 4578888888888888876543211 2567788999999999999999876 2322222 33333 2222222
Q ss_pred HHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceE-EEEEecCCCCChhhHHHHHHhhcCC
Q 037039 241 IMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRY-LLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 241 il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
+.+.++ .+...-..+....|-+.++.++| +|+||||...+......+...+..+
T Consensus 633 vsklig--------sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIG--------SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccC--------CCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 111110 11112222344567778887776 7789999877877777777777654
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.038 Score=53.73 Aligned_cols=71 Identities=13% Similarity=0.206 Sum_probs=51.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++-++|+|++...+...-+.|...+..-..++.+|++|.+. .+...+.+. ...+.+.+++.+++...+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR--Cq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR--CQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh--heEeeCCCcCHHHHHHHHHH
Confidence 456799999998777778888888888877778777777653 443333322 36688999999888777654
No 196
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.0036 Score=56.32 Aligned_cols=115 Identities=13% Similarity=0.020 Sum_probs=59.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
.++.|+|+.|.||||+|...... ...+-..++.+. ..++.......++..++.... ...-....++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~----~~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE----AIPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCccc----ceEeCChHHHHHHHHh
Confidence 47789999999999999888763 323322333331 111222222233333311000 0000122234444444
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK 316 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 316 (505)
..++.-+||+|.+.-.+.++...+...+. ..|..||+|.++.+
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 33345589999995443333333444332 35778999998754
No 197
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.61 E-value=0.014 Score=60.35 Aligned_cols=151 Identities=21% Similarity=0.276 Sum_probs=76.4
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHH-HHHHHhccccccccCCceEEEEecCCCCH--HHHHHHHHHHHH
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTA-VAQLVYNDQRVKEHFELKIWIRVFEDFGE--RQIMRKIMELII 246 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~il~~l~ 246 (505)
...++|++.+.. ..||.|+|..|+|||| |++.+|.+- |...--+-+.++-.. ..+.+.+.+.+.
T Consensus 359 ~~R~~ll~~ir~--------n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 359 ACRDQLLSVIRE--------NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHhh--------CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 445566666643 3689999999999998 889888742 211112334443322 234455555553
Q ss_pred Hhhhhcc--c-cCCCC----------CchH-HHHHHHHHcCCceEEEEEecCCCCC--hhhHHH-HHHhhcCCCCCcEEE
Q 037039 247 EQIMTNY--V-FQGDL----------NTHR-LQQILRDCLNGKRYLLVMDDVWNED--PEAWRN-LKSLLLGGANGSKIL 309 (505)
Q Consensus 247 ~~~~~~~--~-~~~~~----------~~~~-l~~~l~~~L~~kr~LlVlDdvw~~~--~~~~~~-l~~~l~~~~~gs~ii 309 (505)
..++... . .-++. .+.- +.+.|....-+|--.||+|..++.. .+..-. ++..+. ....-|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEE
Confidence 2222110 0 00111 1111 3333444333456689999997532 222222 233333 23467999
Q ss_pred EecCChHHHHhhccCCCCCceeCCC
Q 037039 310 VTTRSRKVASIMGTRGGTTGYNLQG 334 (505)
Q Consensus 310 vTTR~~~va~~~~~~~~~~~~~l~~ 334 (505)
|||-..+........+....+.+++
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecC
Confidence 9998765544443333223333333
No 198
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.61 E-value=0.02 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 199
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.60 E-value=0.011 Score=51.78 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC--CCCHHHHHHHHHHHHHHhhhhccccCCCCCchH-HHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE--DFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR-LQQI 267 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-l~~~ 267 (505)
.+++|+|..|.|||||.+.+..-. ....+.+++.-.. ..+...... ..+ ....+ .+..+ ..-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i------~~~~q--LS~G~~qrl~ 92 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGI------AMVYQ--LSVGERQMVE 92 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCe------EEEEe--cCHHHHHHHH
Confidence 589999999999999999998632 2344555542111 111111100 001 00000 22222 2233
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
+.+.+-.++-++++|+.-. .|......+...+... ..|..||++|.+......
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5555666778888999753 3555555555555432 346678888888765443
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.59 E-value=0.004 Score=61.09 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=58.6
Q ss_pred hHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC-Cc-eEEEEecCC-CCHHHHHHHHHHHHHH
Q 037039 171 DREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF-EL-KIWIRVFED-FGERQIMRKIMELIIE 247 (505)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~v~~~-~~~~~~~~~il~~l~~ 247 (505)
-..++++.+..-. +-+-+.|+|.+|+|||||++.+.+. +.... +. ++|+.+.+. ..+.+++..+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455777776431 2245689999999999999998873 33322 33 467777754 4556666666664422
Q ss_pred hhhhccccCCCC-CchHH---HHHHHHHc--CCceEEEEEecC
Q 037039 248 QIMTNYVFQGDL-NTHRL---QQILRDCL--NGKRYLLVMDDV 284 (505)
Q Consensus 248 ~~~~~~~~~~~~-~~~~l---~~~l~~~L--~~kr~LlVlDdv 284 (505)
.. ..+.. ..... ...+.+++ .+++.+||+|++
T Consensus 192 st-----~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 ST-----FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ec-----CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 10 01111 11111 11111222 589999999998
No 201
>PF14516 AAA_35: AAA-like domain
Probab=96.59 E-value=0.12 Score=51.02 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=98.2
Q ss_pred CCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC-----CCH
Q 037039 160 NVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED-----FGE 234 (505)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~ 234 (505)
...+.+|.|...-+++.+.|... -..+.|.|+-.+|||+|...+.+..+. ..| ..+++++..- .+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCH
Confidence 33367889997777888888642 258899999999999999998874332 234 3446665541 345
Q ss_pred HHHHHHHHHHHHHhhhhccccC----CCC-CchHHHHHHHHHc---CCceEEEEEecCCCCC--h----hhHHHHHHhhc
Q 037039 235 RQIMRKIMELIIEQIMTNYVFQ----GDL-NTHRLQQILRDCL---NGKRYLLVMDDVWNED--P----EAWRNLKSLLL 300 (505)
Q Consensus 235 ~~~~~~il~~l~~~~~~~~~~~----~~~-~~~~l~~~l~~~L---~~kr~LlVlDdvw~~~--~----~~~~~l~~~l~ 300 (505)
...+..++..+..++.-..... ... ........+.+.+ .+++.+|+||++...- . +-+..|+....
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 6677777777766553211000 011 1122333344432 2689999999996321 1 12222222222
Q ss_pred CCC----CCcEEEEecCChHHHHhhcc----CCCCCceeCCCCChhhhHHHHHHh
Q 037039 301 GGA----NGSKILVTTRSRKVASIMGT----RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 301 ~~~----~gs~iivTTR~~~va~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
... ..+-.++.....+....... ......+.|.+++.+|...|....
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 111 11111222111111101111 111246899999999999998766
No 202
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.59 E-value=0.016 Score=54.05 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=54.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEecCCCCHHHHHHHHHHHHHHhhh---hccccCCCCC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH----FELKIWIRVFEDFGERQIMRKIMELIIEQIM---TNYVFQGDLN 260 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~ 260 (505)
..-.++.|+|.+|+|||+||.+++-....... -..++|++....++...+ .++++....... .........+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 45579999999999999999998743222221 357889988777665443 333333321100 0000000111
Q ss_pred chH---HHHHHHHHcC-C-ceEEEEEecCC
Q 037039 261 THR---LQQILRDCLN-G-KRYLLVMDDVW 285 (505)
Q Consensus 261 ~~~---l~~~l~~~L~-~-kr~LlVlDdvw 285 (505)
..+ +...+...+. . +.-|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 122 3333444443 3 66799999984
No 203
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.59 E-value=0.0066 Score=59.66 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=37.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|....+.++.+.+.... ....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 458999999999988886653 2234577999999999999999986
No 204
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.017 Score=57.78 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...++.++|++|+||||++.++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 205
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.021 Score=53.09 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=34.4
Q ss_pred HHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHh
Q 037039 266 QILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLG-GANGSKILVTTRSRKVASI 320 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~ 320 (505)
-.|.+.|..++=||+||.--. .|...-..+...+.. ...|+.||++|-+-.....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHh
Confidence 446678889999999998532 233333334444432 1238899999988765443
No 206
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.55 E-value=0.01 Score=62.06 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=57.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
+.-+++.++|++|+||||||.-|+++. -| .++=+++|+.-+...+-..|...+..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~-------------------- 378 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQN-------------------- 378 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhh--------------------
Confidence 556899999999999999999888732 22 35667888877776665555554421
Q ss_pred HHHHc--CCceEEEEEecCCCCChhhHHHHHHhhc
Q 037039 268 LRDCL--NGKRYLLVMDDVWNEDPEAWRNLKSLLL 300 (505)
Q Consensus 268 l~~~L--~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 300 (505)
...+ .+++.-||+|.+.-......+.|...+.
T Consensus 379 -~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 379 -HSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred -ccccccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 1122 2578889999997554334444544443
No 207
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.013 Score=51.73 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=62.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC--CCCHHHHHHHHHHHHHHhhhhccc-cC----CC-CCch
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE--DFGERQIMRKIMELIIEQIMTNYV-FQ----GD-LNTH 262 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~~~~~-~~----~~-~~~~ 262 (505)
.+++|+|+.|.|||||.+.++.-. ....+.+++.-.. ....... ...+.. ...... .. ++ .+..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~-~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAY-VPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEE-EcCCchhccchHHHHhhCHH
Confidence 589999999999999999998732 2234444432110 0011110 000000 000000 00 00 1111
Q ss_pred H-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 263 R-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 263 ~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
+ ..-.+...+-.++-+++||+-.. .|......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 2 12234555666778999999753 2444455555555433335678888888776643
No 208
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.52 E-value=0.033 Score=48.87 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=60.8
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEE-------EecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWI-------RVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR 263 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 263 (505)
.+++|+|..|.|||||++.+..-.. ...+.+++ .+.+..... ...+.+.+... .....+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~------~~~~LS~G~ 96 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYP------WDDVLSGGE 96 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccc--cccHHHHhhcc------CCCCCCHHH
Confidence 5899999999999999999987421 11222221 122222111 01222222100 111222222
Q ss_pred -HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 264 -LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 264 -l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
..-.+.+.+-.++=+++||+--. .|......+...+... +..||++|.+.....
T Consensus 97 ~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 23334555566777888898642 2444445555555443 356888888776543
No 209
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.038 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47888999999999999988863
No 210
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.48 E-value=0.0035 Score=55.24 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=51.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcccccc-ccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVK-EHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
..++.+.|+.|+|||.||+.+.. ... +.....+-+..+.-.. ..-...++..+... .. .... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~------~~---~~v~----~ 66 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGS------PP---GYVG----A 66 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHH------TT---CHHH----H
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc-cchHHhhhhhhhhc------cc---ceee----c
Confidence 46788999999999999999887 222 2233444444443222 11111112222110 00 0000 0
Q ss_pred HHHcCCceEEEEEecCCCCCh-----------hhHHHHHHhhcC
Q 037039 269 RDCLNGKRYLLVMDDVWNEDP-----------EAWRNLKSLLLG 301 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~ 301 (505)
. ..-+|+||++...+. ..|+.|...+..
T Consensus 67 ~-----~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 67 E-----EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp H-----HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred c-----chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 0 111999999988888 888888887754
No 211
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.075 Score=52.24 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=53.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+++=++|+|++.....+.-+.|...+.+-..++.+|++|.+. .+...+.+. ...+.+.+++.++....+..
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR--Cq~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR--CRLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--cccccCCCCCHHHHHHHHHH
Confidence 567799999998778888899999998877788777777664 444333322 26688999999988776653
No 212
>PRK07667 uridine kinase; Provisional
Probab=96.47 E-value=0.0035 Score=56.63 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.|.+.+.... ....+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665442 4458999999999999999999987
No 213
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.025 Score=54.59 Aligned_cols=142 Identities=25% Similarity=0.423 Sum_probs=74.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc-ccccccCCceEE----EEecCCCC-----H
Q 037039 165 IIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND-QRVKEHFELKIW----IRVFEDFG-----E 234 (505)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~w----v~v~~~~~-----~ 234 (505)
+-+|+.+-.--+++|+. +.+..|.+.|.+|.|||.||-...-. ...++.|..++- +.+.++.. .
T Consensus 226 i~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 34466666666777873 56899999999999999988554321 122344543332 22333211 1
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH---------HHcCCc---eEEEEEecCCCCChhhHHHHHHhhcCC
Q 037039 235 RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR---------DCLNGK---RYLLVMDDVWNEDPEAWRNLKSLLLGG 302 (505)
Q Consensus 235 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~---------~~L~~k---r~LlVlDdvw~~~~~~~~~l~~~l~~~ 302 (505)
.+=+.-.++.+...+..-. .........+...+. .+.+|+ .-+||+|.+.+... .+++..+...
T Consensus 300 EeKm~PWmq~i~DnLE~L~-~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~ 375 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLF-SPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRA 375 (436)
T ss_pred hhhccchHHHHHhHHHHHh-cccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhc
Confidence 1212222222222111000 111111111222221 223454 45899999976544 4566667778
Q ss_pred CCCcEEEEecCChH
Q 037039 303 ANGSKILVTTRSRK 316 (505)
Q Consensus 303 ~~gs~iivTTR~~~ 316 (505)
+.||||+.|--..+
T Consensus 376 G~GsKIVl~gd~aQ 389 (436)
T COG1875 376 GEGSKIVLTGDPAQ 389 (436)
T ss_pred cCCCEEEEcCCHHH
Confidence 89999999875443
No 214
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.47 E-value=0.014 Score=63.57 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=74.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++...- .. ...+.+++..- . ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~-~-~~~~~~-- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAM-P-AGLLES-- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccC-C-hhHhhh--
Confidence 469999999999887776432 22346779999999999999999874311 11 12233333321 1 111111
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcEEEEe
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSKILVT 311 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 311 (505)
.+....... .. +. .......+. ....=.|+||++..........|...+..+. .+.|||.|
T Consensus 446 -~lfg~~~~~--~~-g~-~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 446 -DLFGHERGA--FT-GA-SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred -hhcCccccc--cc-cc-ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEe
Confidence 111100000 00 00 000111121 1223569999998777777778887775431 24588888
Q ss_pred cCCh
Q 037039 312 TRSR 315 (505)
Q Consensus 312 TR~~ 315 (505)
|...
T Consensus 518 t~~~ 521 (686)
T PRK15429 518 TNRD 521 (686)
T ss_pred CCCC
Confidence 8654
No 215
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.45 E-value=0.0064 Score=58.96 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=52.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
+.-+++-|+|++|+||||||.+++.. ....-..++|+.....+++. .++.++.....-. .....+..+....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~-v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLL-ISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHhe-ecCCCCHHHHHHH
Confidence 45578999999999999999987752 33334567888876666643 2233321111000 1111122334444
Q ss_pred HHHHcC-CceEEEEEecCC
Q 037039 268 LRDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 268 l~~~L~-~kr~LlVlDdvw 285 (505)
+...++ +.--+||+|.+-
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 444443 456699999974
No 216
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.43 E-value=0.0059 Score=59.46 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+..++|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55789999999999999999999984
No 217
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0072 Score=62.85 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=47.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
..+-|.|.|+.|+|||+||+.+++... +.+.-.+.+|+.+.--.. . +..|.+- +...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~-~-~e~iQk~-------------------l~~vf 487 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGS-S-LEKIQKF-------------------LNNVF 487 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccch-h-HHHHHHH-------------------HHHHH
Confidence 446788999999999999999998433 333334445544432111 1 2222222 23445
Q ss_pred HHHcCCceEEEEEecCC
Q 037039 269 RDCLNGKRYLLVMDDVW 285 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw 285 (505)
.+.+...+-+|||||+.
T Consensus 488 se~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHHhhCCcEEEEcchh
Confidence 66677889999999995
No 218
>PHA02244 ATPase-like protein
Probab=96.40 E-value=0.018 Score=56.54 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=53.0
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHH
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDC 271 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (505)
-|.|+|++|+|||+||+.++.. ... -|+.++...+ .+...+ .. ..........+ .+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~-----pfv~In~l~d-------~~~L~G-~i----~~~g~~~dgpL----l~A 177 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDL-----DFYFMNAIMD-------EFELKG-FI----DANGKFHETPF----YEA 177 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCC-----CEEEEecChH-------HHhhcc-cc----cccccccchHH----HHH
Confidence 3668999999999999999873 221 2333332111 000000 00 00111111112 222
Q ss_pred cCCceEEEEEecCCCCChhhHHHHHHhhcC-----------CCCCcEEEEecCC
Q 037039 272 LNGKRYLLVMDDVWNEDPEAWRNLKSLLLG-----------GANGSKILVTTRS 314 (505)
Q Consensus 272 L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-----------~~~gs~iivTTR~ 314 (505)
+ .+--+|+||++..........|...+.. ..++.++|+|+..
T Consensus 178 ~-~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 178 F-KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred h-hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 2 2346999999976666666666666532 1356788888875
No 219
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.37 E-value=0.014 Score=58.75 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=33.8
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG-GANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~ 320 (505)
.|-+.|-+.++|+|||.-... |.+-=..|..++.. ...|+.+|+.|....+...
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 467778899999999987533 32322335555543 3456666666666665544
No 220
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.37 E-value=0.0034 Score=55.76 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=28.7
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEE
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWI 226 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 226 (505)
....+|.+.|++|+||||+|+.+++ .....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 3456999999999999999999987 444455555555
No 221
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.37 E-value=0.044 Score=50.27 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=32.9
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
+...|..++=+++||..-. .|......+...+... ..|..||++|.+.+.+..
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 4455566778899999743 2445555555555432 246678888888765544
No 222
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.043 Score=55.44 Aligned_cols=51 Identities=31% Similarity=0.419 Sum_probs=37.2
Q ss_pred Ccccccch---hHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDK---DREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++-|-|+ ++++|+++|.++.. -+..=++=|.++|++|.|||-||+.|+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 56777664 56777788876532 11233567889999999999999999984
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.003 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346889999999999999999873
No 224
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.0026 Score=52.98 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.32 E-value=0.028 Score=49.71 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=60.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC--CCCHHHHHHHHHHHHHHhhhhccc-cC----CC-CCch
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE--DFGERQIMRKIMELIIEQIMTNYV-FQ----GD-LNTH 262 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~~~~~-~~----~~-~~~~ 262 (505)
.+++|+|..|.|||||.+.+..-. ....+.+++.-.. ....... ...+.. ...... .. +. .+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~-~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGY-LPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEE-ECCCCccccCcHHHHCcCHH
Confidence 589999999999999999998632 2233444332110 0111111 111100 000000 00 00 1112
Q ss_pred H-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHH
Q 037039 263 R-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVAS 319 (505)
Q Consensus 263 ~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~ 319 (505)
+ ..-.+...+-.++=+++||+.-. .|......+...+... ..|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2 22234455556677889999753 2444444454444431 23667888888877654
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.32 E-value=0.021 Score=51.15 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=25.5
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
+.|.|++|+|||+||.++.... ...=..++|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence 6789999999999998876532 12224567876644
No 227
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.042 Score=48.56 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=63.0
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCC--------CCch
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGD--------LNTH 262 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~--------~~~~ 262 (505)
.+++|+|..|.|||||.+.+.... ....+.+++.-....+.. ..+-..+.. .......... .+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~-~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGY-LPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEE-EecCCccccCCcHHHHhhcCHH
Confidence 589999999999999999998732 223344443211000000 000000000 0000000000 1112
Q ss_pred H-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 263 R-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 263 ~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
+ ..-.+...+..++=++++|+.-. .|......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2 22235566667888999999743 2444445555555432 236778999888776553
No 228
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.31 E-value=0.019 Score=54.20 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=38.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEecCCCCHHHHHHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH----FELKIWIRVFEDFGERQIMRKIMEL 244 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~ 244 (505)
..-.+.=|+|.+|+|||+|+.+++-...+... =..++|++-...|+...+. +|++.
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~ 95 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAER 95 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhc
Confidence 34468999999999999999877643222221 2357899988888887664 45543
No 229
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.30 E-value=0.017 Score=56.82 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 165 IIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
++|....+.++.+.+.... ....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677778888887776543 22345679999999999999999863
No 230
>PTZ00301 uridine kinase; Provisional
Probab=96.30 E-value=0.0044 Score=56.54 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 231
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.28 E-value=0.0092 Score=57.84 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=51.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
+.-+++-|+|++|+||||||.++... ....-..++|+...+.++.. .+++++.....-. ........+....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~-v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLL-VSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeE-EecCCCHHHHHHH
Confidence 55679999999999999999887763 33333466788766655543 2333321111100 1111122233344
Q ss_pred HHHHcC-CceEEEEEecCC
Q 037039 268 LRDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 268 l~~~L~-~kr~LlVlDdvw 285 (505)
+...++ +..-+||+|.+-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 444443 456699999984
No 232
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.058 Score=56.01 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=85.5
Q ss_pred CCCCC-CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEec
Q 037039 158 QPNVP-PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVF 229 (505)
Q Consensus 158 ~~~~~-~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 229 (505)
.|.+. +++=|.++-+.+|.+.+..+.. -+-..++-|..+|+||+|||++|+.+.+ ...-+| +.+.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvk 500 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVK 500 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eecc
Confidence 34445 5666788877777766543211 0124567788999999999999999998 444444 3332
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------ChhhHHHHHHh
Q 037039 230 EDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPEAWRNLKSL 298 (505)
Q Consensus 230 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~ 298 (505)
.+ +++... .+ ..+..+.+.+++.-+--+++|.||.++.. .......|..-
T Consensus 501 gp--------EL~sk~---------vG--eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtE 561 (693)
T KOG0730|consen 501 GP--------ELFSKY---------VG--ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTE 561 (693)
T ss_pred CH--------HHHHHh---------cC--chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHH
Confidence 21 111111 01 11222444455554556788899988531 11223334444
Q ss_pred hcCCCCCcEEEE---ecCChHHHHhhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 299 LLGGANGSKILV---TTRSRKVASIMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 299 l~~~~~gs~iiv---TTR~~~va~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+........|+| |-|...+-..+-.-|. ...+.++.-+.+-..++|+.+
T Consensus 562 mDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~ 614 (693)
T KOG0730|consen 562 MDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC 614 (693)
T ss_pred cccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHH
Confidence 433333333443 4444444333322111 144555555555567777764
No 233
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.27 E-value=0.074 Score=49.22 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHhh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~~ 321 (505)
|...+-..+-+++||+.-. .|......+...+... ..|..||++|.+...+..+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~ 215 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV 215 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4445556677999999743 2445555555555432 2467789999887766543
No 234
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.26 E-value=0.0033 Score=57.61 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+..+|+|.|.+|+||||||+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999873
No 235
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.26 E-value=0.0034 Score=56.74 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 236
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.0036 Score=53.32 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.24 E-value=0.011 Score=53.29 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=32.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC-CCCHHHHHHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE-DFGERQIMRKIMELI 245 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l 245 (505)
+++|.++|+.|+||||.+.+++.... .+-..+..++... .....+-++...+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l 55 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEIL 55 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHh
Confidence 47899999999999998777776332 2223455665432 223334444445544
No 238
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.23 E-value=0.091 Score=49.91 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=66.9
Q ss_pred hHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhh
Q 037039 171 DREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIM 250 (505)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~ 250 (505)
..+.++..|... ....-++|+|+.|+|||||.+.+... + ....+.+++.- ......+...++...+.. .
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g-~~v~~~d~~~ei~~~~~~-~- 165 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRG-KKVGIVDERSEIAGCVNG-V- 165 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECC-EEeecchhHHHHHHHhcc-c-
Confidence 345555555532 33567899999999999999999873 2 22233444311 011100111222221100 0
Q ss_pred hccccCCCCC---chHHHHHHHHHc-CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 251 TNYVFQGDLN---THRLQQILRDCL-NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 251 ~~~~~~~~~~---~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
.........+ ...-...+...+ ...+=++++|.+- ..+.+..+...+. .|..+|+||....+...
T Consensus 166 ~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0000000011 100111122222 2478899999984 3455565655553 47789999988766443
No 239
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.22 E-value=0.1 Score=45.86 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=37.9
Q ss_pred HHHHHHcCCceEEEEEecCC-CCCh-hhHHHHHHhhcCCCCCcEEEEecCChHHHHhhc
Q 037039 266 QILRDCLNGKRYLLVMDDVW-NEDP-EAWRNLKSLLLGGANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw-~~~~-~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~ 322 (505)
-.+.+.+-+++-+|+=|.-- +.|+ ..|+-+.-+-.-+..|+.||++|.+..+...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34666777888889888652 2232 345444333333567999999999999887664
No 240
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.053 Score=50.98 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
.|...|..+.=+++||..-. .|...-..+...+... ..|..||++|.+...+..+
T Consensus 125 ~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 125 AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 35566677888999999743 2444444455444432 2366789999887766543
No 241
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.21 E-value=0.021 Score=56.23 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=68.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|.+..+..+...+... +.+.+.|.+|+|||+||+.+.. ... -..+++.......+.+++....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCchh
Confidence 34889888888887777644 3577999999999999999987 222 2335566666666665544333
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcC
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG 301 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 301 (505)
-...... .....-. ...+. ..-+.++.+|.++......-..|...+..
T Consensus 91 ~~~~~~~------~~~~~~~--~gpl~---~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 91 YAALLLE------PGEFRFV--PGPLF---AAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred Hhhhhcc------CCeEEEe--cCCcc---cccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 2221000 0000000 00000 01116999999998777666667776654
No 242
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.20 E-value=0.0062 Score=59.00 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=45.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|+|.++.++++++.+...+.+.+..-+|+-++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999877666677889999999999999999999876
No 243
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.19 E-value=0.004 Score=56.97 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+...+|+|+|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4558999999999999999999986
No 244
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0094 Score=56.37 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=73.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcccccc--ccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVK--EHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
.++|.++|+||.|||+|.+.+++...++ +.|....-+.+ +...+..+....-+ -....+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi----nshsLFSKWFsESg------------KlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI----NSHSLFSKWFSESG------------KLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE----ehhHHHHHHHhhhh------------hHHHHHHHH
Confidence 5789999999999999999999875443 34544444433 22333333222111 112235666
Q ss_pred HHHHcCCce--EEEEEecCCCC------------Chh---hHHHHHHhhcCC-CCCcEEEEecCCh----HHHHhhccCC
Q 037039 268 LRDCLNGKR--YLLVMDDVWNE------------DPE---AWRNLKSLLLGG-ANGSKILVTTRSR----KVASIMGTRG 325 (505)
Q Consensus 268 l~~~L~~kr--~LlVlDdvw~~------------~~~---~~~~l~~~l~~~-~~gs~iivTTR~~----~va~~~~~~~ 325 (505)
+.+.+.++. .++.+|.|.+. ..+ ..+.+...+..- ....-+|+||.|- ++|---.+.
T Consensus 241 I~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRAD- 319 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRAD- 319 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhh-
Confidence 777777654 34567877321 111 122222222221 1223466666553 233222222
Q ss_pred CCCceeCCCCChhhhHHHHHHh
Q 037039 326 GTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 326 ~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
-...+++-+.+.-.++++.+
T Consensus 320 --i~~yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 320 --IVFYVGPPTAEAIYEILKSC 339 (423)
T ss_pred --heeecCCccHHHHHHHHHHH
Confidence 34566777777667777655
No 245
>PRK08233 hypothetical protein; Provisional
Probab=96.18 E-value=0.004 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999863
No 246
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.034 Score=58.22 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=86.0
Q ss_pred CcccccchhHHHHHHHHhc---CCC----CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQ---TSD----GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
..+.|.+...+.+.+.+.. ... ..-...+.+.++|++|.|||.||+.+++ ....+| +.+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----
Confidence 4566666666555554422 111 0123456888999999999999999998 333344 222211
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC------C-----hhhHHHHHHhhcCCC-
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE------D-----PEAWRNLKSLLLGGA- 303 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~------~-----~~~~~~l~~~l~~~~- 303 (505)
. ++... -......+...+....+..++.|.+|.+..- + ......+...+....
T Consensus 311 ~----l~sk~-----------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 311 E----LLSKW-----------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred H----Hhccc-----------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 1 11111 0011222445555666788999999999521 1 134455555554333
Q ss_pred -CCcEEEEecCChHHHHhhccC-CC-CCceeCCCCChhhhHHHHHHh
Q 037039 304 -NGSKILVTTRSRKVASIMGTR-GG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 304 -~gs~iivTTR~~~va~~~~~~-~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+..||-||.........-.. +. ...+.+.+-+.++..+.|..+
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~ 422 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIH 422 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHH
Confidence 333345555444332211110 11 246777888888888888764
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.024 Score=50.40 Aligned_cols=126 Identities=18% Similarity=0.195 Sum_probs=61.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCC----------CC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGD----------LN 260 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~----------~~ 260 (505)
.+++|+|..|.|||||++.+.... ....+.+.+.-........-.......+.. .......... .+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGM-VFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEE-EecCCccCCCCCHHHheeecCC
Confidence 589999999999999999998631 223344433110000000000000011100 0000000000 11
Q ss_pred chH-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-C-CCcEEEEecCChHHHHh
Q 037039 261 THR-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-A-NGSKILVTTRSRKVASI 320 (505)
Q Consensus 261 ~~~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~-~gs~iivTTR~~~va~~ 320 (505)
..+ ..-.+...+..++=+++||+--. .|......+...+... . .|..||++|.+......
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 112 22234555666778889998743 3455555555555432 2 25678888888765543
No 248
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.16 E-value=0.016 Score=61.21 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=38.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|....+.++.+.+.... .....|.|+|..|+|||++|+.+++.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 679999999999998886543 22345679999999999999999874
No 249
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.13 E-value=0.021 Score=59.87 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=75.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
+..++|....++++.+.+.... ....-|.|+|..|+|||++|+.+++...- .-...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHH--
Confidence 3679999999999998887653 23356779999999999999999874221 111223344333221 1111
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcEEEE
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSKILV 310 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiv 310 (505)
..++...... ... ... +....+. ....=.|+||++..........|...+..+. ...+||.
T Consensus 256 -~~lfG~~~g~--~~g-a~~-~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 327 (509)
T PRK05022 256 -SELFGHVKGA--FTG-AIS-NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327 (509)
T ss_pred -HHhcCccccc--cCC-Ccc-cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEE
Confidence 1221110000 000 000 0000111 1122347899998777777788888776532 1458888
Q ss_pred ecCCh
Q 037039 311 TTRSR 315 (505)
Q Consensus 311 TTR~~ 315 (505)
||...
T Consensus 328 ~t~~~ 332 (509)
T PRK05022 328 ATNRD 332 (509)
T ss_pred ecCCC
Confidence 87543
No 250
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.13 E-value=0.02 Score=52.26 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCceEEEEEecCC-CCChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 264 LQQILRDCLNGKRYLLVMDDVW-NEDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
-.-.+.+.|-..+-+|+-|.-- +-|...-..+...+... ..|..||+.|.+..+|..+
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 3345667778888888888752 22444444555555432 3477899999999999865
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.12 E-value=0.046 Score=48.32 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998876
No 252
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.12 E-value=0.042 Score=51.28 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=33.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRK 240 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 240 (505)
+.-.++.|+|.+|+|||+||.++... .. .+=..++|++..+. ..++..+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~-~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-AL-KQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HH-hCCCEEEEEEcCCC--HHHHHHH
Confidence 45678999999999999999998542 11 22346778877543 3444443
No 253
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.09 E-value=0.07 Score=49.25 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
|.+.+-.++-+++||+... .|......+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 4455556677899999753 2444555555555543334568888877765543
No 254
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.09 E-value=0.0038 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 255
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.037 Score=52.45 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCc---hH
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNT---HR 263 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~---~~ 263 (505)
-+.-+++=|+|+.|+||||||.+++- ..+..-..++|+..-..+++..+. ++...... +.......+. .+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d----~l~v~~~~~~e~q~~ 129 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLD----NLLVSQPDTGEQQLE 129 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhc----ceeEecCCCHHHHHH
Confidence 35668999999999999999988776 344444578999988888887643 33333111 0001111121 22
Q ss_pred HHHHHHHHcCCceEEEEEecCC
Q 037039 264 LQQILRDCLNGKRYLLVMDDVW 285 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw 285 (505)
+.+.+......+--|+|+|.+-
T Consensus 130 i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 130 IAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHhccCCCCEEEEecCc
Confidence 5555555555556799999984
No 256
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.021 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+++.|+|++|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 257
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.008 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999884
No 258
>PRK09354 recA recombinase A; Provisional
Probab=96.08 E-value=0.014 Score=57.02 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=53.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
+.-+++-|+|++|+||||||.+++.. ....-..++|+.....+++. .+++++.....-. .....+..+....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~ll-i~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLL-VSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeE-EecCCCHHHHHHH
Confidence 45679999999999999999887752 33334567888877766653 2333322111111 1111122333344
Q ss_pred HHHHcC-CceEEEEEecCC
Q 037039 268 LRDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 268 l~~~L~-~kr~LlVlDdvw 285 (505)
+...++ +..-+||+|.+-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 444443 456699999984
No 259
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.07 E-value=0.005 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhc
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+..+++|.|++|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999886
No 260
>PRK06762 hypothetical protein; Provisional
Probab=96.07 E-value=0.0044 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 261
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.07 E-value=0.063 Score=49.30 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLG-GANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~~ 321 (505)
.+...+-.++=+++||..-. .|......+...+.. ...|..||++|.+...+..+
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence 34445555667899998743 244444555554432 23456788888887766544
No 262
>PRK06547 hypothetical protein; Provisional
Probab=96.05 E-value=0.0079 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999863
No 263
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.05 E-value=0.11 Score=44.36 Aligned_cols=110 Identities=12% Similarity=0.201 Sum_probs=80.0
Q ss_pred cchh-hhH-HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHHhhchhhhh
Q 037039 2 VESF-FPI-EKLLEKLGSSAYEELLLFCGVKNDLHKLKEKLTTVKSVVLDAEEKQN-HNRRLSDWLGKLKDACYDAEDVL 78 (505)
Q Consensus 2 Ae~~-~av-~~l~~kl~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~Wl~~lr~~ayd~eD~l 78 (505)
||.+ +|+ +.+++.|...+.+........+.=+++|..++++|.-++.+.+.... -+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 4445 556 88888888888888888888888899999999999999999887543 23333677889999999999998
Q ss_pred hhhHhHHHHHHHhhhcccccccccccccCcchhHHhhHHHHHHHHHHHHHHHHh
Q 037039 79 DEFEVEDQRRQVMKQRSIGRKFRNFFGSSNPIAFRFRMGHQIKKIRERFDEIAK 132 (505)
Q Consensus 79 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~l~~~l~~i~~ 132 (505)
..|.. ++++ ++...++.+++|+++.+.+....+
T Consensus 83 ~k~sk----------------~~r~-----n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 83 EKCSK----------------VRRW-----NLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHhcc----------------ccHH-----HHHhhHhHHHHHHHHHHHHHHHhc
Confidence 87732 1110 122345677888888777766544
No 264
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.03 E-value=0.076 Score=52.47 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=51.7
Q ss_pred ceeEEEEEecCCChHHH-HHHHHhccccccccCCceEEEEecCCCCH--HHHHHHHHHHHHHhhhhccccCCCCCchHHH
Q 037039 189 TVSVVPIVGIGGLGKTA-VAQLVYNDQRVKEHFELKIWIRVFEDFGE--RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQ 265 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 265 (505)
+-++|.+||+.|+|||| ||+..+.-....+ =..+..++.. .+.+ .+-++.-.+-+.. +...-.+..++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtD-tYRIGA~EQLk~Ya~im~v------p~~vv~~~~el~ 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTD-TYRIGAVEQLKTYADIMGV------PLEVVYSPKELA 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEec-cchhhHHHHHHHHHHHhCC------ceEEecCHHHHH
Confidence 36899999999999996 7766654221122 2345555543 2222 2222222222211 111112334444
Q ss_pred HHHHHHcCCceEEEEEecCCCC--ChhhHHHHHHhhcCC
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE--DPEAWRNLKSLLLGG 302 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~--~~~~~~~l~~~l~~~ 302 (505)
..+.. +++. =+|.+|-+-.. |.....++...+...
T Consensus 274 ~ai~~-l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 274 EAIEA-LRDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred HHHHH-hhcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 44433 3444 45556766532 445666677766654
No 265
>PRK14974 cell division protein FtsY; Provisional
Probab=96.02 E-value=0.047 Score=53.49 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.+|.++|++|+||||++..++.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999998887775
No 266
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.02 E-value=0.062 Score=48.69 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999998864
No 267
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.02 E-value=0.036 Score=55.76 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=36.3
Q ss_pred CCCcccccchhHHHHHHHHhc------C--CCCCC----CceeEEEEEecCCChHHHHHHHHhc
Q 037039 161 VPPDIIGRDKDREKIIELLMQ------T--SDGKS----ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~------~--~~~~~----~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..++|.+..++.+...+.. . ....+ .....+.++|++|+|||+||+.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 346789999999888765521 0 00000 1135788999999999999999986
No 268
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.99 E-value=0.081 Score=49.84 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=69.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
+.+.++|+.|+|||+-++.+++. .+....+..+..+....+...+...... .......+....+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~--------~~~~~~~d~~~~~~~ 160 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFG--------ATDGTINDLTERLMI 160 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHH
Confidence 47889999999999999999873 2333444566666666666666555532 222334446666777
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCC
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGAN 304 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 304 (505)
.+.+..-+|+.|.........++.|.......+.
T Consensus 161 ~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi 194 (297)
T COG2842 161 RLRDTVRLIIVDEADRLPYRALEELRRIHDKTGI 194 (297)
T ss_pred HHccCcceeeeehhhccChHHHHHHHHHHHhhCc
Confidence 7788889999999877777788888776655433
No 269
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.99 E-value=0.092 Score=50.14 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=34.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMEL 244 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~ 244 (505)
-.++.|.|.+|+||||++.++..... ..+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999998876321 22124577877655 445555555443
No 270
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.99 E-value=0.1 Score=48.03 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=38.1
Q ss_pred CcccccchhHHH---HHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREK---IIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.++.+.+ |.+.|.++..=++-.++-|..+|++|.|||.+|+.+.|.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 678998877654 456665543222345678889999999999999999993
No 271
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.98 E-value=0.03 Score=54.95 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=39.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHHHHHHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQIMRKIMELI 245 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l 245 (505)
..-.++-|+|.+|+|||+|+.+++-...... .-..++|+.....|++..+.. +++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 4557888999999999999988763222211 124678999988888887644 44444
No 272
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.97 E-value=0.05 Score=48.72 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=29.3
Q ss_pred CceEEEEEecCCCC-ChhhHHH----HHHhhcCCCCCcEEEEecCChHHHHhhc
Q 037039 274 GKRYLLVMDDVWNE-DPEAWRN----LKSLLLGGANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 274 ~kr~LlVlDdvw~~-~~~~~~~----l~~~l~~~~~gs~iivTTR~~~va~~~~ 322 (505)
.++-|+++|..-.. +...-.. +...+.. ..|+.+|++|...++...+.
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 37889999998532 2222222 2222322 23678999999988776653
No 273
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.025 Score=51.78 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
.+...+..++=+++||+--. .|...-..+...+.....+..||++|.+......
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 35556667888999999742 2444444455555432224568888888776543
No 274
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.95 E-value=0.12 Score=46.11 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
|...+-.++-+++||+--. .|......+...+... ..|..||++|.+......
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5555666778999999743 2445555555555432 236778999888754443
No 275
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.93 E-value=0.11 Score=47.25 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCceEEEEEecCCCC-ChhhH----HHHHHhhcCCCCCcEEEEecCChHHHHhhcc
Q 037039 273 NGKRYLLVMDDVWNE-DPEAW----RNLKSLLLGGANGSKILVTTRSRKVASIMGT 323 (505)
Q Consensus 273 ~~kr~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~gs~iivTTR~~~va~~~~~ 323 (505)
..++-|+++|..-.. +..+. ..+...+.. .|+.+|+||...+++..+..
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 356789999998432 22221 223333333 37889999999998887654
No 276
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.93 E-value=0.083 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999998887765
No 277
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.92 E-value=0.037 Score=59.55 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=32.3
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|.+...+++.+.+..... -+..-.+-|.|+|++|+|||++|+.+.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4567777666666554432110 0011133488999999999999999987
No 278
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.89 E-value=0.075 Score=49.15 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=34.5
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
.+...+-.++-++++|+--. .|......+...+... ..|..||++|.+.+....
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45566677888999999743 2445555555555432 246778888888765443
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.89 E-value=0.048 Score=49.49 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 266 QILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
-.|...+-..+=++++|+.-. .|......+...+... ..|..||++|.+......
T Consensus 113 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 345556666778999999742 3444555555554432 236678889888876653
No 280
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.89 E-value=0.14 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.++.++|.+|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877765
No 281
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.88 E-value=0.0061 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++|.|+|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 282
>PRK04132 replication factor C small subunit; Provisional
Probab=95.88 E-value=0.097 Score=57.35 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=78.0
Q ss_pred cCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCce
Q 037039 198 IGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKR 276 (505)
Q Consensus 198 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 276 (505)
|.++||||+|..+++..- .+.++ ..+-++.++..+.. ..++++..+... .+. -..+.
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~--------~~~------------~~~~~ 631 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFART--------KPI------------GGASF 631 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhc--------CCc------------CCCCC
Confidence 678899999999998421 12222 34566666544433 444554444210 000 01245
Q ss_pred EEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 277 YLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 277 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
-++|+|+++..+......|...+..-...+++|++|.+. .+...+.+ ....+.+.+++.++-...+..
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHHHHHHHHH
Confidence 799999999888788888888888755566777665544 34333332 236799999998877766553
No 283
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.88 E-value=0.046 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998875
No 284
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.87 E-value=0.065 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|+|..|+|||||++.++.-
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 285
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.87 E-value=0.036 Score=48.46 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=62.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceE---EEEecCCCCHHHHHHHHHHHHH-Hhhhhccc-cCCCCCc---
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKI---WIRVFEDFGERQIMRKIMELII-EQIMTNYV-FQGDLNT--- 261 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~v~~~~~~~~~~~~il~~l~-~~~~~~~~-~~~~~~~--- 261 (505)
...|-|++..|.||||+|..+.- +...+=-.+. |+.-.........+... .+. ........ ...+...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 36788888899999999977654 2222211222 33222223444444332 110 00000000 0001110
Q ss_pred --hHHHHHHHHHcCCceE-EEEEecCCC---CChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 262 --HRLQQILRDCLNGKRY-LLVMDDVWN---EDPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 262 --~~l~~~l~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
.+..+..++.+...+| |+|||.+-. ...-..+.+...+....++.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1133344455555444 999999831 12233456677777777788999999986
No 286
>PRK03839 putative kinase; Provisional
Probab=95.87 E-value=0.0056 Score=54.58 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 287
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.041 Score=47.76 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=63.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchH-HHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR-LQQILR 269 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-l~~~l~ 269 (505)
.+++|+|..|.|||||.+.+.... ....+.+++.-....... .......+. ...+ .+..+ ..-.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~------~~~q--lS~G~~~r~~l~ 92 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIG------YVPQ--LSGGQRQRVALA 92 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceE------EEee--CCHHHHHHHHHH
Confidence 589999999999999999998732 234455554321111100 001111110 0000 22222 222345
Q ss_pred HHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHhh
Q 037039 270 DCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~~ 321 (505)
..+...+=++++|..-. .|......+...+... ..+..++++|.+.......
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 55556678899999853 2444455555554431 2256788888887766543
No 288
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0071 Score=54.64 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=23.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.+|+|-|.+|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 289
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.09 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.++.++|+.|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 290
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.79 E-value=0.039 Score=55.78 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=47.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCch-------
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTH------- 262 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~------- 262 (505)
-..++|+|..|+|||||++.+.... ....+++++.-...-+...+....+...... ........+....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~r-tI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKK-AVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCC-eEEEEEcCCCCHHHHHHHHH
Confidence 3578999999999999999887632 1223444443223344444444443332110 0000011111111
Q ss_pred ---HHHHHHHHHcCCceEEEEEecC
Q 037039 263 ---RLQQILRDCLNGKRYLLVMDDV 284 (505)
Q Consensus 263 ---~l~~~l~~~L~~kr~LlVlDdv 284 (505)
...+.++. +++..||++||+
T Consensus 241 ~a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHH--cCCCEEEeccch
Confidence 13333433 489999999998
No 291
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.77 E-value=0.09 Score=48.58 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
+...+-..+-+++||+.-. .|......+...+... ..|..||++|.+......
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 4455566778899999743 3445555555555432 236679999988876544
No 292
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.75 E-value=0.09 Score=47.44 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=59.9
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEE---------------EecCCCC---HHHHHHHHHHHHHHhhhhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWI---------------RVFEDFG---ERQIMRKIMELIIEQIMTN 252 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---------------~v~~~~~---~~~~~~~il~~l~~~~~~~ 252 (505)
.+++|.|+.|.|||||.+.+..-.. .....+.+++ .+.+... ...+...+.... .
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~--~---- 108 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA--K---- 108 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH--H----
Confidence 5899999999999999999986320 0112222221 1111111 112222221100 0
Q ss_pred cccCCCCCchH-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChH
Q 037039 253 YVFQGDLNTHR-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRK 316 (505)
Q Consensus 253 ~~~~~~~~~~~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~ 316 (505)
. ...+..+ ..-.|...+-.++-++++|+.-. .|......+...+... ..|..||++|.+..
T Consensus 109 --~-~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 109 --L-RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred --h-ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0 0122222 22234555556777899999753 2455555555555432 23677888888763
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.75 E-value=0.19 Score=45.85 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
+.+.+-.++=+++||+... .|......+...+.....|..+|++|.+.....
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 4445556777888999753 244555555555554334677888888776654
No 294
>PRK04040 adenylate kinase; Provisional
Probab=95.73 E-value=0.0078 Score=53.97 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999977
No 295
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.73 E-value=0.024 Score=56.55 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=37.4
Q ss_pred CCcccccchhHHHHHHHHhcC-------CC-CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 162 PPDIIGRDKDREKIIELLMQT-------SD-GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..++|.++.++.+.-.+... .. .....++-|.++|++|+|||++|+.+..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899988888887666532 00 0112346788999999999999999987
No 296
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.72 E-value=0.071 Score=49.54 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=30.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
-.++.|.|.+|+||||||.++.... .+.. ..+++++. ..+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 4589999999999999986655421 1222 34566653 33445555555
No 297
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.71 E-value=0.16 Score=49.40 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
+...+-.++-+++||.--. .|...-..+...+.....+..||+||.+.+.+..+
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHh
Confidence 4556667888999999743 24444444444443322356799999988755443
No 298
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.12 Score=49.32 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHhh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~~ 321 (505)
|...|-.++=++++|..-. .|......+...+... ..|..||++|.+.+.+..+
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 4445556677999999753 2445555555555432 2366788888887655443
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.12 Score=51.73 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=53.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccc-cCC-ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKE-HFE-LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
..++|.++|+.|+||||.+..+........ .-. .+..++. +.+....... +......+..+ ........++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQ--L~~~a~~lgvp--v~~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQ--IQTYGDIMGIP--VKAIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHH--HHHHhhcCCcc--eEeeCcHHHHHH
Confidence 357999999999999999988876322211 112 3334443 3333332211 33332221111 111112233444
Q ss_pred HHHHHcCCceEEEEEecCCCC--ChhhHHHHHHhhcC
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE--DPEAWRNLKSLLLG 301 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~--~~~~~~~l~~~l~~ 301 (505)
.+.+. .+.-++++|..-.. +......+...+..
T Consensus 248 ~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred HHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 44443 34568888988543 22344556665554
No 300
>PHA00729 NTP-binding motif containing protein
Probab=95.68 E-value=0.014 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....|.|.|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999987
No 301
>PRK04328 hypothetical protein; Provisional
Probab=95.67 E-value=0.055 Score=50.96 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
+.-.++.|.|.+|+|||+||.++... .. ..-..++|++..+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 34578999999999999999886542 12 23356788877653
No 302
>PRK10867 signal recognition particle protein; Provisional
Probab=95.67 E-value=0.12 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997777665
No 303
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.66 E-value=0.016 Score=55.47 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999987754
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.66 E-value=0.11 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+.+|.++|.+|+||||+|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999988863
No 305
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.29 Score=47.28 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-hHHHHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+.+=++|+|++........+.|...+...++++.+|++|.+ ..+...+.+ ....+++.+++.++....+..
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S--Rc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS--RCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh--CeEEEECCCCCHHHHHHHHHH
Confidence 47778889999777777888899999887778877776544 444433322 237799999999988766654
No 306
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.11 Score=47.00 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=38.4
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHhhccC
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG-GANGSKILVTTRSRKVASIMGTR 324 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~~~~~ 324 (505)
.+.+.+--++-|.|||..++- |.+....+...+.. ..+|+-+||.|..+.++......
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 344444556778999998653 44555555554443 34577789999999998887543
No 307
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.63 E-value=0.032 Score=55.28 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=63.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
...+.|.|+.|+||||+.+.+.+ .+..+....++. +.++. +....-...+.. ....+.......+.++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~---E~~~~~~~~~i~------q~evg~~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPI---EYVHRNKRSLIN------QREVGLDTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCCh---hhhccCccceEE------ccccCCCCcCHHHHHH
Confidence 36899999999999999998876 333344445543 22221 111000000000 0011122233667788
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
..|...+=.|++|.+. +.+.+...... ...|..++.|+-..+...
T Consensus 190 ~~lr~~pd~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 190 AALREDPDVILIGEMR--DLETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred HhhccCCCEEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 8888899999999994 44555443332 234556777776655543
No 308
>PRK00625 shikimate kinase; Provisional
Probab=95.62 E-value=0.0077 Score=53.15 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 309
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.094 Score=50.20 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
-.|...|-.++=+|+||+.-.. |......+...+... ..|..||++|.+.+.+..
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3455666778889999998532 444455555555432 236678888888776544
No 310
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.077 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 311
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.60 E-value=0.056 Score=52.72 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=34.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~ 236 (505)
..-.++.|+|.+|+|||||+..++....... .-..++|+.....++...
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 4568999999999999999988864222111 112568998877777765
No 312
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.59 E-value=0.06 Score=50.38 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988875
No 313
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.57 E-value=0.1 Score=48.47 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=29.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
+.-.++.|.|.+|+||||||.++.... ...-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 345789999999999999998876421 12234677887643
No 314
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.56 E-value=0.0073 Score=54.79 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|+|.|++|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.11 Score=54.98 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
.|...|-.++-+|+||.-... |...-..+...+.. .|..||++|.+......+
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhh
Confidence 344555667789999997532 44455555555543 356688888888765543
No 316
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.55 E-value=0.0091 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999999999987
No 317
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.54 E-value=0.016 Score=49.89 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=25.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEE
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWI 226 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 226 (505)
..+|-|.|.+|+||||||+.+.. +....-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 36889999999999999999987 333333344444
No 318
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.54 E-value=0.13 Score=53.11 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=33.7
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLG-GANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~ 320 (505)
.|...|-..+-+|+||..-. .|......+...+.. ...|..||++|.+......
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~ 208 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKS 208 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 35555666788999999753 244444445444433 2346678899888765544
No 319
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.21 Score=46.58 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
.|...|-.++-+++||+.-. .|......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 45566677888999999853 2445555555555442236678888888776643
No 320
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.52 E-value=0.0095 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.52 E-value=0.1 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|+|+.|.|||||.+.++.-
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 322
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.51 E-value=0.038 Score=50.53 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=28.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
.-++|.|.+|+|||+|+..+.++. .-+..+++.+.+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer 52 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGER 52 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESEC
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeecccc
Confidence 568899999999999999998743 2234477777654
No 323
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.50 E-value=0.0075 Score=55.61 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|+|.|.+|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 324
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.50 E-value=0.19 Score=46.29 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=29.8
Q ss_pred CceEEEEEecCCCCC----hhh-HHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 274 GKRYLLVMDDVWNED----PEA-WRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~----~~~-~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
+++-|++||..-... ... -..+...+... .++.+|++|...+++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 578999999974321 111 11233334332 578899999999887655
No 325
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.48 E-value=0.12 Score=46.98 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 326
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.47 E-value=0.034 Score=54.40 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999863
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.46 E-value=0.019 Score=47.94 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccc
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
++..++-+.|...- ..-.+|.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555554321 223589999999999999999998753
No 328
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.45 E-value=0.032 Score=55.71 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=37.9
Q ss_pred CCcccccchhHHHHHHHHhcC--------CCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 162 PPDIIGRDKDREKIIELLMQT--------SDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..++|.+..++.+..++... ..........|.++|++|+|||+||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999998877541 000011246789999999999999999987
No 329
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.44 E-value=0.039 Score=47.51 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.9
Q ss_pred EEecCCChHHHHHHHHhc
Q 037039 195 IVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 195 I~G~gGiGKTtLA~~v~~ 212 (505)
|+|++|+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999987
No 330
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.43 E-value=0.26 Score=47.13 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=41.1
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCC-hHHHHhhccCCCCCceeCCCC
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGYNLQGL 335 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~va~~~~~~~~~~~~~l~~L 335 (505)
++.=++|+|++.....+.++.|...+..-.+++.+|++|.+ ..+...+.+. ...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR--cq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR--SLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc--ceEEEccch
Confidence 55668899999888889999999999887777777776666 4443332221 244555544
No 331
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.42 E-value=0.01 Score=56.48 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 173 EKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 173 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++.+... + +-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~------~-~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN------G-RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC------T-EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc------C-CcEEEECCCCCchhHHHHhhhc
Confidence 4455555532 2 4567999999999999998775
No 332
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.40 E-value=0.039 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=18.1
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+.|.|.|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47889999999999999999873
No 333
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.39 E-value=0.015 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+++|+|..|+|||||++.+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3467999999999999999999986
No 334
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.39 E-value=0.012 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++|+|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 335
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.38 E-value=0.0091 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 336
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.37 E-value=0.11 Score=49.39 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=46.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceE-EEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKI-WIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
+-..++|.||+||+||++.+..= . +..+ -+.+++.++..+.-.++-..+ .+
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~i---~---~~~~~~i~~~~~y~~~~f~~dLk~~~----------------------~~ 83 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAFI---C---GYEVFQIEITKGYSIKDFKEDLKKAL----------------------QK 83 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHHH---T---TEEEE-TTTSTTTHHHHHHHHHHHHH----------------------HH
T ss_pred CCeEEecCCCccHHHHHHHHHHH---h---ccceEEEEeeCCcCHHHHHHHHHHHH----------------------HH
Confidence 55669999999999999887641 1 1111 122334444433322221111 22
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcC
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG 301 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 301 (505)
...++++..+++.|-+-.+..-++.+...+..
T Consensus 84 ag~~~~~~vfll~d~qi~~~~fLe~in~LL~s 115 (268)
T PF12780_consen 84 AGIKGKPTVFLLTDSQIVDESFLEDINSLLSS 115 (268)
T ss_dssp HHCS-S-EEEEEECCCSSSCHHHHHHHHHHHC
T ss_pred HhccCCCeEEEecCcccchHhHHHHHHHHHhC
Confidence 34578899999999765555566777666654
No 337
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.37 E-value=0.01 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4679999999999999998873
No 338
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.37 E-value=0.23 Score=48.31 Aligned_cols=55 Identities=29% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG-GANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~~ 321 (505)
.|...|-.++=+|+||.--.. |...-..+...+.. ...|..||+||.+.+-+..+
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 355666778889999997432 33333333333332 23477899999988766544
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.37 E-value=0.059 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.+++.++|++|+||||++..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999999888876
No 340
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.015 Score=48.70 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
.+-|.|.|.||+|||||+..+.... ..-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhH
Confidence 3457799999999999999997521 2246666653
No 341
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.35 E-value=0.013 Score=52.21 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 342
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.34 E-value=0.089 Score=55.25 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=35.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|....+.++++.+.... ..-.-|.|+|..|+||+++|+.+++
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHH
Confidence 579999998888887775432 1123477999999999999999875
No 343
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.33 E-value=0.047 Score=47.93 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=67.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC-CCCHHHHHHHHHH
Q 037039 165 IIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE-DFGERQIMRKIME 243 (505)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~ 243 (505)
++|....+.++++.+.... ... .-|.|+|..|+||+.+|+.+++...- ...-|+.+.- ..+... +-.
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~-~pVlI~GE~GtGK~~lA~~IH~~s~r----~~~pfi~vnc~~~~~~~----~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSD-LPVLITGETGTGKELLARAIHNNSPR----KNGPFISVNCAALPEEL----LES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TST-S-EEEECSTTSSHHHHHHHHHHCSTT----TTS-EEEEETTTS-HHH----HHH
T ss_pred CEeCCHHHHHHHHHHHHHh---CCC-CCEEEEcCCCCcHHHHHHHHHHhhhc----ccCCeEEEehhhhhcch----hhh
Confidence 4788888888888876653 122 45569999999999999999983211 1223343332 222222 222
Q ss_pred HHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC------C-----CCcEEEEec
Q 037039 244 LIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG------A-----NGSKILVTT 312 (505)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTT 312 (505)
.|+...... ........ ...+... ..=-|+||++.......-..|...+..+ . ...|||.||
T Consensus 69 ~LFG~~~~~--~~~~~~~~--~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 69 ELFGHEKGA--FTGARSDK--KGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp HHHEBCSSS--STTTSSEB--EHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred hhhcccccc--cccccccc--CCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 332210000 00000101 1122222 2336789999876666666677666532 1 157888888
Q ss_pred CCh
Q 037039 313 RSR 315 (505)
Q Consensus 313 R~~ 315 (505)
...
T Consensus 142 ~~~ 144 (168)
T PF00158_consen 142 SKD 144 (168)
T ss_dssp SS-
T ss_pred CcC
Confidence 754
No 344
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.015 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 345
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.32 E-value=0.062 Score=47.74 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=63.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC---CCCHHHHHHHHHHHHHH-hhhhccccCCCCCchH--
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE---DFGERQIMRKIMELIIE-QIMTNYVFQGDLNTHR-- 263 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~-- 263 (505)
...|-|+|..|-||||+|..+.- +...+=-.+..+...+ .......+..+- .+.- ...............+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 46888999999999999977654 2222211222333322 233334333310 0000 0000000000000111
Q ss_pred ----HHHHHHHHcCCce-EEEEEecCCC---CChhhHHHHHHhhcCCCCCcEEEEecCChH
Q 037039 264 ----LQQILRDCLNGKR-YLLVMDDVWN---EDPEAWRNLKSLLLGGANGSKILVTTRSRK 316 (505)
Q Consensus 264 ----l~~~l~~~L~~kr-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 316 (505)
..+..++.+...+ =|+|||.+-. ...-..+.+...+....++.-||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2333445554444 5999999831 122345667777777777889999999763
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.32 E-value=0.083 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...++.++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998863
No 347
>PRK06217 hypothetical protein; Validated
Probab=95.31 E-value=0.011 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
.|.|.|++|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998743
No 348
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.31 E-value=0.014 Score=53.83 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhccc
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
..++.+|.++||+|+||||..+.++.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 3556788899999999999999998743
No 349
>PRK05439 pantothenate kinase; Provisional
Probab=95.28 E-value=0.023 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhc
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998876
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.27 E-value=0.012 Score=52.11 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 351
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.27 E-value=0.17 Score=47.43 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=33.0
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
.+...+-.++=+++||+.-. .|......+...+.....+..||++|.+.+.+..
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRS 207 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 34555666777999999743 3444444554444432224578888888776544
No 352
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.26 E-value=0.023 Score=52.60 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999876
No 353
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.26 E-value=0.0088 Score=49.18 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=18.2
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCC
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQRVKEHFE 221 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 221 (505)
|.|+|.+|+||||+|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999987 4555553
No 354
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.24 E-value=0.012 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 355
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.049 Score=49.73 Aligned_cols=55 Identities=31% Similarity=0.331 Sum_probs=39.4
Q ss_pred CCCC-CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 159 PNVP-PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 159 ~~~~-~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
|.+. .++-|.+-.++++.+...-+-. -+-+.++-+.++|++|.|||.||+.|.|+
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4443 6677888888888776543211 11244567789999999999999999994
No 356
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.23 E-value=0.03 Score=59.63 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=55.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|.+..++.|...+... +.+.++|.+|+||||+|+.+.... ...+|+..+|... ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 77999999888888777532 368899999999999999988732 2234577788765 3346667777777
Q ss_pred HHHHHhh
Q 037039 243 ELIIEQI 249 (505)
Q Consensus 243 ~~l~~~~ 249 (505)
.+++.++
T Consensus 101 ~~~G~~~ 107 (637)
T PRK13765 101 AGKGKQI 107 (637)
T ss_pred HhcCHHH
Confidence 6655543
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.22 E-value=0.016 Score=49.27 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=26.0
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999842 223454444554443
No 358
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.011 Score=50.20 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+|.|-|++|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6889999999999999999874
No 359
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.08 Score=54.53 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=85.2
Q ss_pred CCCCCC-CcccccchhHHHHHHHHhcCCCC-------CCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 037039 157 TQPNVP-PDIIGRDKDREKIIELLMQTSDG-------KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRV 228 (505)
Q Consensus 157 ~~~~~~-~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 228 (505)
+.|.+. .++=|.++-..++.-.+..+-.. +-..+.=|.++|++|+|||-||++|+| +..-+| +++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isV 576 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISV 576 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----Eee
Confidence 344444 44555566666666655543210 112245677999999999999999999 444455 433
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----C------hhhHHHHHH
Q 037039 229 FEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----D------PEAWRNLKS 297 (505)
Q Consensus 229 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----~------~~~~~~l~~ 297 (505)
-.+ + +++... + .++......+.+.-..-+|.|.||.+... + ....++|+.
T Consensus 577 KGP----E----LlNkYV---------G--ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLt 637 (802)
T KOG0733|consen 577 KGP----E----LLNKYV---------G--ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLT 637 (802)
T ss_pred cCH----H----HHHHHh---------h--hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHH
Confidence 221 2 222211 0 11222444555555678999999998521 1 123344444
Q ss_pred hhcCC--CCCcEEEEecCChHHHHhhccC-CC-CCceeCCCCChhhhHHHHHH
Q 037039 298 LLLGG--ANGSKILVTTRSRKVASIMGTR-GG-TTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 298 ~l~~~--~~gs~iivTTR~~~va~~~~~~-~~-~~~~~l~~L~~~~~~~Lf~~ 346 (505)
-+... ..|--||-.|..+++....-.. |. ...+-++.-+.+|-..+++.
T Consensus 638 ElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~ 690 (802)
T KOG0733|consen 638 ELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKT 690 (802)
T ss_pred HhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHH
Confidence 44432 3455666666555543221111 11 12344444455555555543
No 360
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.21 E-value=0.082 Score=51.97 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=39.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHHHHHHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQIMRKIMELI 245 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l 245 (505)
..-.++-|+|.+|+|||+|+..++-...... .-..++|+.....|++..+ .+|++.+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~ 181 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERF 181 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHc
Confidence 4467888999999999999987774222111 1126889999888888765 3444443
No 361
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.20 E-value=0.026 Score=46.28 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=35.7
Q ss_pred CcccccchhHHHHHHHHhcCCC-CCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-GKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|..-..+.+.+.+..--. ....++-|++.+|.+|+|||.+++.++++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4577776666666655543211 12467789999999999999988887764
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.19 E-value=0.037 Score=51.27 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 171 DREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...++++.+... ..+..+|+|.|+||+|||||...+...
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 455666666654 245689999999999999999888763
No 363
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.18 E-value=0.069 Score=50.26 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=66.2
Q ss_pred CcccccchhHHHHHHHHhcCCC-CCCCceeEEEEEecCCChHHHHHHHHhccccccc-cCCceE-EEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE-HFELKI-WIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~-wv~v~~~~~~~~~~~ 239 (505)
..++|..-.++.|+..+...-. ....++-+++.+|.+|+||.-+++.+.++..-.. +=+.+- ++....-+....+ .
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i-e 160 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI-E 160 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH-H
Confidence 4567776666666666643211 1246788999999999999999998887532111 001110 1100000111110 0
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHc-CCceEEEEEecCCCCChhhHHHHHHhhc
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL-NGKRYLLVMDDVWNEDPEAWRNLKSLLL 300 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 300 (505)
.- ..++...++..+ .-+|-|+|||++......-.+.|...+.
T Consensus 161 ~Y-------------------k~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 161 DY-------------------KEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HH-------------------HHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 00 011333444433 3579999999998777777777777766
No 364
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.17 E-value=0.06 Score=54.25 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=28.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCC
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFG 233 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 233 (505)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+.+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~r 201 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGR 201 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChH
Confidence 3578999999999999999998632 224555566665443
No 365
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.15 E-value=0.2 Score=46.92 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC--CCCCcEEEEecCChHHHHhhcc
Q 037039 264 LQQILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG--GANGSKILVTTRSRKVASIMGT 323 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~va~~~~~ 323 (505)
-...+...|..+.=+|+||.--+. |...--.+...+.. ...|..||+++.+-+.|...+.
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 334566777788888889985321 21111222222322 1346779999999988876543
No 366
>PRK13947 shikimate kinase; Provisional
Probab=95.14 E-value=0.013 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 367
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.024 Score=51.71 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC--CCCCcEEEEecCChHHHHhhcc
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG--GANGSKILVTTRSRKVASIMGT 323 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~va~~~~~ 323 (505)
.+.+.|.-++=+||+|..-+. |...-..+...|.. ...+-.+|+.|.+-.++..++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 456667777888889986432 22222223333322 2245568888888887777664
No 368
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.14 E-value=0.21 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.7
Q ss_pred eEEEEEecCCChHHHHHHHHh
Q 037039 191 SVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~ 211 (505)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 369
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.14 E-value=0.017 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 370
>PRK13949 shikimate kinase; Provisional
Probab=95.12 E-value=0.014 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.|+|++|+||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 371
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.016 Score=50.02 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 037039 192 VVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~ 211 (505)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998886
No 372
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.12 Score=54.68 Aligned_cols=103 Identities=16% Similarity=0.284 Sum_probs=64.1
Q ss_pred CCCCC-CcccccchhHHHHHHHHhcCCC------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 158 QPNVP-PDIIGRDKDREKIIELLMQTSD------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 158 ~~~~~-~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
.|.+. .++=|.++-+.+|.+-+.-+-. .+-.+..=|.++|++|.|||-||++|+.. |. ..|++|-.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE------cs-L~FlSVKG 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE------CS-LNFLSVKG 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh------ce-eeEEeecC
Confidence 35555 7788899999988876633110 01122456779999999999999999872 21 22444433
Q ss_pred CCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCC
Q 037039 231 DFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWN 286 (505)
Q Consensus 231 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~ 286 (505)
+ ++++.-. + .++..+.+.+.+.-..++|.|.||.+++
T Consensus 739 P--------ELLNMYV---------G--qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 739 P--------ELLNMYV---------G--QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H--------HHHHHHh---------c--chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2 2222221 1 1223355556666677999999999965
No 373
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.09 E-value=0.055 Score=56.51 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|....+.++.+.+..-. ....-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 569999999999988876543 22356779999999999999999874
No 374
>PRK08149 ATP synthase SpaL; Validated
Probab=95.09 E-value=0.083 Score=53.31 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-..++|+|..|+|||||...+++.
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcC
Confidence 357899999999999999999873
No 375
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.015 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhccc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999998843
No 376
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.24 Score=49.02 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=52.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCH--HHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGE--RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
+.+++.++|+.|+||||++..+.... ...-..+.+++.. ++.. ..-+....+.+.. +.....+..++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaD-tyR~gAveQLk~yae~lgv------pv~~~~dp~dL~~ 275 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTD-TFRSGAVEQFQGYADKLDV------ELIVATSPAELEE 275 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCC-ccCccHHHHHHHHhhcCCC------CEEecCCHHHHHH
Confidence 46799999999999999998887632 1221234555543 3322 2223332222210 0111123344555
Q ss_pred HHHHHcC-CceEEEEEecCCC--CChhhHHHHHHhh
Q 037039 267 ILRDCLN-GKRYLLVMDDVWN--EDPEAWRNLKSLL 299 (505)
Q Consensus 267 ~l~~~L~-~kr~LlVlDdvw~--~~~~~~~~l~~~l 299 (505)
.+...-. +..=+|++|-.-. .+.+....+....
T Consensus 276 al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 276 AVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 5544321 3345788888753 2333444554444
No 377
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.27 Score=52.66 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=81.6
Q ss_pred CcccccchhHHHH---HHHHhcCCCC---CCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKI---IELLMQTSDG---KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l---~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.++.|-++.+++| +++|.++... +-.-++=+.++|++|+|||-||++++... .+-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH-----
Confidence 6788877655555 5556543211 12335667899999999999999999833 2334555432
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC---------------ChhhHHHHHHhhcC
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE---------------DPEAWRNLKSLLLG 301 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---------------~~~~~~~l~~~l~~ 301 (505)
+.++.+. .. ......+.+...-...+++|.+|++... ....+++|..-+..
T Consensus 379 ---EFvE~~~---------g~--~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 379 ---EFVEMFV---------GV--GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred ---HHHHHhc---------cc--chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 1222221 00 0111222333333456788888887421 12234444444443
Q ss_pred CCCCc--EEEEecCChHHHHhh--ccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 302 GANGS--KILVTTRSRKVASIM--GTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 ~~~gs--~iivTTR~~~va~~~--~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...++ -+|-+|...++.... ...--.+.+.++.-+.....++|..+
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 33333 233355544443221 11111244666666666666777654
No 378
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.06 E-value=0.04 Score=53.36 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 159 PNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|..++.++-.......++..+... +.|.|.|.+|+||||+|+.+..
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence 444455666656666677777432 3588999999999999999987
No 379
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.05 E-value=0.017 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=21.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-.+|+|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 380
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.04 E-value=0.24 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++++|.+|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999988865
No 381
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.04 E-value=0.018 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999763
No 382
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.04 E-value=0.03 Score=53.22 Aligned_cols=42 Identities=29% Similarity=0.207 Sum_probs=34.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
+.-+++.|+|.+|+|||+++.++.. ....+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 5568999999999999999988877 44555788999987764
No 383
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.64 Score=42.63 Aligned_cols=62 Identities=27% Similarity=0.255 Sum_probs=41.9
Q ss_pred Ccccc-cchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 163 PDIIG-RDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 163 ~~~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
..++| .+..+.+|.+.+.-+.. -+-.+++-+.++|++|.|||-||+.|+++ ..+-|+.||..
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs 215 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS 215 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH
Confidence 34555 47778877776643211 11245667889999999999999999873 34456777653
No 384
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.12 Score=48.53 Aligned_cols=100 Identities=20% Similarity=0.344 Sum_probs=61.5
Q ss_pred CCCC-CcccccchhHHHHHHHHhcCC------CCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 159 PNVP-PDIIGRDKDREKIIELLMQTS------DGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 159 ~~~~-~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
|.+. +++-|.+..++.|.+...-+- ++....-+-|.++|++|.||+-||+.|... ... -|++||..
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----TFFSvSSS 200 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----TFFSVSSS 200 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----ceEEeehH
Confidence 4444 678899999888887653221 122344678889999999999999999873 222 23444432
Q ss_pred CCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc-CCceEEEEEecCC
Q 037039 232 FGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL-NGKRYLLVMDDVW 285 (505)
Q Consensus 232 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw 285 (505)
+ ++.... + +...+...|.+.- .+|+-+|.+|.+.
T Consensus 201 ----D----LvSKWm---------G---ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ----D----LVSKWM---------G---ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ----H----HHHHHh---------c---cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 2 222221 0 1222444444433 4689999999985
No 385
>PRK15453 phosphoribulokinase; Provisional
Probab=95.03 E-value=0.11 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998875
No 386
>PRK14530 adenylate kinase; Provisional
Probab=95.02 E-value=0.016 Score=53.37 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 387
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.02 E-value=0.047 Score=49.12 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=26.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccC--------CceEEEEecCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHF--------ELKIWIRVFED 231 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~v~~~ 231 (505)
.++.|.|++|+||||++..+.........| ..++|+....+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999998887643322223 25667766554
No 388
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.01 E-value=0.09 Score=46.19 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL 272 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L 272 (505)
+.|.|.+|+|||++|.++... .....+++.-...++.. +...|.. .... .+..+...+....|.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~-H~~~------R~~~w~t~E~~~~l~~~l 68 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIAR-HRKR------RPAHWRTIETPRDLVSAL 68 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHH-HHHh------CCCCceEeecHHHHHHHH
Confidence 678999999999999988652 22456777666666543 3333333 1110 233333333223333333
Q ss_pred CC--ceEEEEEecC
Q 037039 273 NG--KRYLLVMDDV 284 (505)
Q Consensus 273 ~~--kr~LlVlDdv 284 (505)
.. +.-.+++|.+
T Consensus 69 ~~~~~~~~VLIDcl 82 (169)
T cd00544 69 KELDPGDVVLIDCL 82 (169)
T ss_pred HhcCCCCEEEEEcH
Confidence 21 2337999987
No 389
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.00 E-value=0.088 Score=57.01 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+.++|....+.++.+.+.... ....-|.|+|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 568999988888888776543 12234679999999999999999873
No 390
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.99 E-value=0.024 Score=55.73 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=36.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+.+||.++.+..|...+.+ +++.-+.|.|..|+||||+|+.+++
T Consensus 17 ~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 7899999988888777654 4455677999999999999999975
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.98 E-value=0.13 Score=52.28 Aligned_cols=59 Identities=24% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhcc
Q 037039 264 LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGT 323 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~ 323 (505)
....|.+.|=.++.||.||+--+ .|.+.-.-|..+|.....+ .++|++++++..+..++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhh
Confidence 34445566667899999999753 2445444556666654433 69999999987776665
No 392
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.97 E-value=0.023 Score=50.84 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=25.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEE
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIW 225 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w 225 (505)
.+++.|+|+.|+|||||++.+.. .....|...++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hccccccccee
Confidence 36889999999999999999987 34445543333
No 393
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.96 E-value=0.017 Score=48.97 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 394
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.95 E-value=0.28 Score=46.87 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=32.6
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
.|.+.+-.++=+++||+... .|......+...+.....++.||++|.+.+...
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~ 201 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML 201 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 34455556677888999753 345555556565554334667777777665544
No 395
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.94 E-value=0.055 Score=52.61 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=39.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcccccc----ccCCceEEEEecCCCCHHHHHHHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVK----EHFELKIWIRVFEDFGERQIMRKIMELI 245 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~l 245 (505)
+.-.++-|+|++|+|||+|+.+++-..... ..=..++|++....|++..+.. +++.+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 455789999999999999998765322221 1123678999888888877643 44444
No 396
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.94 E-value=0.054 Score=55.19 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=30.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDF 232 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 232 (505)
+-++|.|.+|+|||||+..+.++... .+-+.++++-+.+..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~ 184 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERS 184 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcch
Confidence 57899999999999999888874322 245677777666543
No 397
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.94 E-value=0.052 Score=57.85 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=50.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc-cCCceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE-HFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
..++|.++.++.+...+... ..+.++|++|+||||+|+.+.+ .... .|...+++..+ ..+...++..+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHH
Confidence 77899999888888777532 2455999999999999999987 3333 33333333322 23455667777
Q ss_pred HHHHHHhh
Q 037039 242 MELIIEQI 249 (505)
Q Consensus 242 l~~l~~~~ 249 (505)
...++...
T Consensus 87 ~~~~g~~~ 94 (608)
T TIGR00764 87 PAGEGREI 94 (608)
T ss_pred HHhhchHH
Confidence 77665543
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.085 Score=54.33 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|+|+|++|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 399
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.93 E-value=0.086 Score=53.30 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=28.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCC
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFG 233 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 233 (505)
-..++|+|..|+|||||++.+++... -+.++++-+.+...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~r 197 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGR 197 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcH
Confidence 46789999999999999999987322 23455566665443
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.92 E-value=0.017 Score=49.80 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999986
No 401
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.90 E-value=0.2 Score=52.60 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=32.2
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG-GANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~ 320 (505)
.|...|-..+-+|+||.--.. |...-..+...+.. ...|..||++|.+...+..
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 205 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQ 205 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 355556667789999997432 33333444444432 1236678899988765544
No 402
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.89 E-value=0.089 Score=52.21 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=61.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
..++=+-|||..|.|||.|.-..|+...++.. ........+.++-+.+.... ...+....
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~----------~~~~~l~~ 119 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLR----------GQDDPLPQ 119 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHh----------CCCccHHH
Confidence 34677889999999999999999985433110 01122345555555553311 11112334
Q ss_pred HHHHcCCceEEEEEecCCCCChhhHHHHHHhhcC-CCCCcEEEEecCChHH
Q 037039 268 LRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLG-GANGSKILVTTRSRKV 317 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v 317 (505)
+.+.+.++..||.||.+.-.|..+---|...|.. ...|. +||+|.|...
T Consensus 120 va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 120 VADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred HHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 4455666777999999865444333333333332 23455 6666655543
No 403
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.88 E-value=0.18 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-..++|+|+.|+|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 404
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=94.87 E-value=0.44 Score=43.65 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEecCCChHHHHHHHHh
Q 037039 191 SVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~ 211 (505)
.+++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHhe
Confidence 589999999999999999976
No 405
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.87 E-value=0.015 Score=50.83 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=18.1
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 406
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.87 E-value=0.077 Score=49.92 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=62.0
Q ss_pred HHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-HhhhccCchHHHHHHHHHHHhhchhhhhhhhH
Q 037039 8 IEKLLEKLGSSAYEELLLFCGVKNDLHKLKEKLTTVKSVVLDA-EEKQNHNRRLSDWLGKLKDACYDAEDVLDEFE 82 (505)
Q Consensus 8 v~~l~~kl~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~ 82 (505)
|..++++|-.+.......+.-++.+++-++.+++++|.||+.. ++....-........++-..||++|.++|.+.
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 4677888888877777777778999999999999999999987 44344333488999999999999999999874
No 407
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.86 E-value=0.27 Score=51.33 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhccCCCCCceeCCC
Q 037039 264 LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGYNLQG 334 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~~~~~~~~~~l~~ 334 (505)
..-.|...+-.+.=+||||.--+ -|.+..+.|..+|... +|+ ||+.|.+......+.. ..+.+.+
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va~----~i~~~~~ 511 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVAT----RIWLVED 511 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhcc----eEEEEcC
Confidence 33445566677889999998743 3666777777777654 344 8888999988776653 4455543
No 408
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.86 E-value=0.02 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEecCCChHHHHHHHHhccc
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~ 214 (505)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998754
No 409
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.83 E-value=0.022 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 410
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.83 E-value=0.045 Score=47.32 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+++|.+.|. + +++.++|..|+|||||...+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45777888883 2 68899999999999999999874
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.81 E-value=0.026 Score=45.12 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=19.3
Q ss_pred eEEEEEecCCChHHHHHHHHh
Q 037039 191 SVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~ 211 (505)
..++|+|+.|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 678999999999999999876
No 412
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.80 E-value=0.028 Score=51.31 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+.|.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4568899999999999999999875
No 413
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.79 E-value=0.045 Score=49.22 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..+..+.-.... ..-+.++|++|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688888888777665542 24688999999999999999864
No 414
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.78 E-value=0.088 Score=49.68 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=34.6
Q ss_pred eEEEEEecCCChHHHHHHHHhccccc--cccCCceEEEEecCCCCH-HHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRV--KEHFELKIWIRVFEDFGE-RQIMRKI 241 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~v~~~~~~-~~~~~~i 241 (505)
+-++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+..+. .++..++
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~ 123 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDF 123 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHh
Confidence 46789999999999999988875331 122467788888765433 3444443
No 415
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.77 E-value=0.039 Score=51.96 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHH
Q 037039 173 EKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 173 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
.+|+..+... ..+..+|+|.|.||+|||||.-.+-.....+.+=-.++=|.-|.+++--.++-+=
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 4555656543 3667899999999999999998877643333332334445555555555554443
No 416
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.76 E-value=0.025 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..+|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999987
No 417
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.76 E-value=0.32 Score=48.04 Aligned_cols=56 Identities=29% Similarity=0.270 Sum_probs=34.2
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC-CCCCcEEEEecCChHHHHhhc
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG-GANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~va~~~~ 322 (505)
.|...|-.++=+|+||.--.. |...-..+...+.. ...|..||+||.+.+.+..++
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~ 239 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 239 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 345566678889999997432 33333334443332 124677999999887665443
No 418
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.76 E-value=0.28 Score=53.00 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
.|...|-.++=+|+||.--+. |...-..|...+... +..||++|.+......+
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPI 212 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHh
Confidence 455566677889999997532 333334455555443 23588888888766554
No 419
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.74 E-value=0.02 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.1
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 420
>PRK14527 adenylate kinase; Provisional
Probab=94.74 E-value=0.022 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 421
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.74 E-value=0.17 Score=54.82 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 422
>PTZ00035 Rad51 protein; Provisional
Probab=94.73 E-value=0.22 Score=49.10 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=37.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcccccc---c-cCCceEEEEecCCCCHHHHHHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVK---E-HFELKIWIRVFEDFGERQIMRKIMEL 244 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~~~~il~~ 244 (505)
..-.++.|+|.+|+|||||+..++-..... . .=..++|+.....+++..+ .++.+.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~ 175 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAER 175 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHH
Confidence 456799999999999999998886432211 0 1134568887777776663 333443
No 423
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.73 E-value=0.077 Score=50.37 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=55.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
-.++.|.|..|+||||++..+.+. +.. ....+ +.+.++.... +..+ .++ ... ........+.++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~~-~q~--------~v~-~~~~~~~~~~l~ 143 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPGI-NQV--------QVN-EKAGLTFARGLR 143 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCCc-eEE--------EeC-CcCCcCHHHHHH
Confidence 368999999999999999887652 221 11121 2222221100 0000 000 001 111123667778
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHH
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVA 318 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va 318 (505)
..|+..+=.|+++++.+ .+....+..+.. .|..++-|....++.
T Consensus 144 ~~lR~~PD~i~vgEiR~--~e~a~~~~~aa~---tGh~v~tTlHa~~~~ 187 (264)
T cd01129 144 AILRQDPDIIMVGEIRD--AETAEIAVQAAL---TGHLVLSTLHTNDAP 187 (264)
T ss_pred HHhccCCCEEEeccCCC--HHHHHHHHHHHH---cCCcEEEEeccCCHH
Confidence 88888888999999954 343333333332 344455555544433
No 424
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.70 E-value=0.039 Score=54.12 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=35.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+||.+..+..+.-.+.. +...-+.|.|.+|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~------~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID------PKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999888766664 3345677999999999999999975
No 425
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.70 E-value=0.16 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.5
Q ss_pred eEEEEEecCCChHHHHHHHHh
Q 037039 191 SVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~ 211 (505)
.++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 426
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.70 E-value=0.022 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..|.|+|+.|+|||||++.+.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4688999999999999999987
No 427
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.68 E-value=0.087 Score=52.54 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=28.8
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 3468999999999999999988763 222224567776543
No 428
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.68 E-value=0.022 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 429
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.68 E-value=0.65 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+.+|.++|.+|+||||++..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988875
No 430
>PLN02200 adenylate kinase family protein
Probab=94.66 E-value=0.025 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 431
>PTZ00494 tuzin-like protein; Provisional
Probab=94.65 E-value=4.5 Score=40.88 Aligned_cols=171 Identities=10% Similarity=0.094 Sum_probs=100.7
Q ss_pred CCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHH
Q 037039 159 PNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 238 (505)
+..+..+|.|+.+-..+.+.|.+.. ...++++.+.|.-|.||++|.+.....+.+ ..++|.+... ++.+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchH
Confidence 4455789999999998888887654 467899999999999999999887764322 3456766544 3456
Q ss_pred HHHHHHHHHhhhhccccCCCC-CchH-HHHHHH---HHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEec
Q 037039 239 RKIMELIIEQIMTNYVFQGDL-NTHR-LQQILR---DCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTT 312 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~-~~~~-l~~~l~---~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTT 312 (505)
+.|++.++-+ ..+.+ +..+ +.+... ....++.=+||+-=-.- .-...+.+.. .|.....-|.|++--
T Consensus 436 rsVVKALgV~------nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EV 508 (664)
T PTZ00494 436 RSVVRALGVS------NVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAV 508 (664)
T ss_pred HHHHHHhCCC------ChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeec
Confidence 7788877431 11111 2222 122222 22345555666532210 1112222222 233334457788755
Q ss_pred CChHHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 313 RSRKVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 313 R~~~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
-.+.+-...-.-+....|.+.+++.++|.+.-.+.
T Consensus 509 plESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 509 PMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hHhhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 44443322222244466899999999998877654
No 432
>PRK13948 shikimate kinase; Provisional
Probab=94.63 E-value=0.025 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.....|.++|+.|+||||+++.+.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457888999999999999999987
No 433
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.63 E-value=0.041 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++.+|+|.|++|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 56789999999999999999999863
No 434
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.62 E-value=0.28 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 435
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.60 E-value=0.078 Score=55.41 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=38.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|....++++.+.+.... ....-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 569999999999988876542 22346779999999999999999874
No 436
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.031 Score=47.84 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999887765
No 437
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.59 E-value=0.032 Score=54.67 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 161 VPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.-..++|.+..++.+.-.+.. .+..-+.+.|.+|+||||+|+.+..
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 337799999998887755542 2234588999999999999999865
No 438
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.59 E-value=0.15 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|+|..|+|||||.+.+.+.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999998873
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=94.59 E-value=0.31 Score=51.99 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
.|...|..+.=+++||.--. .|...-..+...+... ..|..||++|.+...+..+
T Consensus 463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 35566677888999998642 2444444555555432 2356688888887766554
No 440
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.58 E-value=0.031 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999998863
No 441
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.038 Score=59.29 Aligned_cols=159 Identities=21% Similarity=0.294 Sum_probs=85.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccc---cccccC-CceEEEEecCCCCHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQ---RVKEHF-ELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~v~~~~~~~~~~ 238 (505)
..++||+++++++++.|.... .+.++ ++|.+|+|||++|.-++..- .|-... +..++. + +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D----- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----D----- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----c-----
Confidence 559999999999999998653 23333 68999999999776665410 111111 112211 0 0
Q ss_pred HHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC---------ChhhHHHHHHhhcCCCCCcEEE
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE---------DPEAWRNLKSLLLGGANGSKIL 309 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~ii 309 (505)
+ ..+.. + ..-.+.-+..+...+.+.-+.++..|.+|.++.. ..+.-+-|+.+|..+.- -.|=
T Consensus 234 --~-g~LvA----G-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL-~~IG 304 (786)
T COG0542 234 --L-GSLVA----G-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL-RCIG 304 (786)
T ss_pred --H-HHHhc----c-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe-EEEE
Confidence 0 01100 0 0001111222444444444456899999998631 12233445555554432 3366
Q ss_pred EecCChHHHHhhc----cCCCCCceeCCCCChhhhHHHHHHh
Q 037039 310 VTTRSRKVASIMG----TRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 vTTR~~~va~~~~----~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.||-++. -+.+. -.-....+.+...+.+++..++.-.
T Consensus 305 ATT~~EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 305 ATTLDEY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred eccHHHH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 6775542 11111 0012267889999999998888644
No 442
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.55 E-value=0.38 Score=50.86 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=34.3
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhc
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~ 322 (505)
.|...+-.++-+|+||.--+ .|...-..+...+... .+ .||++|.+...+..++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~~ 502 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSLA 502 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHhC
Confidence 35556667788999999743 2444445555555543 24 6888888887665543
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.18 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++.++|+.|+||||++.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999988888763
No 444
>PRK13975 thymidylate kinase; Provisional
Probab=94.52 E-value=0.027 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 445
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.51 E-value=0.08 Score=54.04 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=31.5
Q ss_pred eEEEEEecCCChHHHHH-HHHhcccccc-----ccCCceEEEEecCCCCHHH
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYNDQRVK-----EHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~-----~~F~~~~wv~v~~~~~~~~ 236 (505)
+-++|.|..|+|||+|| ..+.|...+. ++-+.++++-+.+..+.-.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ 241 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVA 241 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHH
Confidence 46789999999999997 6666643221 2335677888887654433
No 446
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.49 E-value=0.081 Score=53.76 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=48.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCC-HHHHHHHHHHHHHHhhhhccccCCCCCch-H-----
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFG-ERQIMRKIMELIIEQIMTNYVFQGDLNTH-R----- 263 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~-~----- 263 (505)
+-++|.|.+|+|||||+..+..+... ++=+.++++-+.+... ..+++.+++..=...-..-.....+.... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 56889999999999999887653221 1113566676665433 23344443331000000000000111111 1
Q ss_pred HHHHHHHHc---CCceEEEEEecC
Q 037039 264 LQQILRDCL---NGKRYLLVMDDV 284 (505)
Q Consensus 264 l~~~l~~~L---~~kr~LlVlDdv 284 (505)
..-.+-+++ ++++.||++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 222344444 679999999998
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.48 E-value=0.029 Score=49.08 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.8
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 448
>PRK05922 type III secretion system ATPase; Validated
Probab=94.45 E-value=0.16 Score=51.43 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|+|..|+|||||.+.+.+.
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc
Confidence 56899999999999999999873
No 449
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.44 E-value=0.031 Score=51.05 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhc
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++++|+++|..|+|||||..++.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999999876
No 450
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.43 E-value=0.17 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.7
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++..|.|.+|.||||++..+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 6888999999999999988876
No 451
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.42 E-value=0.16 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++.|.|.+|+||||+|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 588999999999999998875
No 452
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.42 E-value=0.5 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|+|..|+|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 453
>PRK13409 putative ATPase RIL; Provisional
Probab=94.41 E-value=0.26 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|+.|+|||||.+.+..
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999876
No 454
>PF13245 AAA_19: Part of AAA domain
Probab=94.38 E-value=0.036 Score=41.43 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.5
Q ss_pred eEEEEEecCCChHHHHH-HHHhc
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~ 212 (505)
+++.|.|++|.|||+++ ..+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57788999999999544 44443
No 455
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.36 E-value=0.12 Score=46.89 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=47.8
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCC-----Cc
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDL-----NT 261 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~-----~~ 261 (505)
..++.++.|.|.+|+||||++..+..... ....+.++...--.......++...- ..... ..
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~---------~~~~~~~~~~~a 78 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKAD---------PDEASELTQKEA 78 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHH---------CCCTHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhh---------hhhhHHHHHHHH
Confidence 46788999999999999999998876211 24445554322111111111111110 00000 11
Q ss_pred hHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC
Q 037039 262 HRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA 303 (505)
Q Consensus 262 ~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 303 (505)
..+...+....-.+++=||+|..-. +......+...+...+
T Consensus 79 ~~~~~~~~~~a~~~~~nii~E~tl~-~~~~~~~~~~~~k~~G 119 (199)
T PF06414_consen 79 SRLAEKLIEYAIENRYNIIFEGTLS-NPSKLRKLIREAKAAG 119 (199)
T ss_dssp HHHHHHHHHHHHHCT--EEEE--TT-SSHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCC-ChhHHHHHHHHHHcCC
Confidence 1145555555556777888898754 2344444666665533
No 456
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.36 E-value=0.031 Score=49.55 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++.|+|++|+|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 457
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.35 E-value=0.077 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 458
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.33 E-value=0.078 Score=53.74 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=34.4
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCH-HHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGE-RQIMRKI 241 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~~~i 241 (505)
+-++|.|.+|+|||+|+..+.++.. +.+-+.++|+-+.+..+. .+++.++
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~ 189 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREM 189 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHH
Confidence 5688999999999999999877532 233467788877765433 3344443
No 459
>PRK06761 hypothetical protein; Provisional
Probab=94.32 E-value=0.06 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
++|.|.|++|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 460
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.31 E-value=0.12 Score=52.23 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=27.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
-..++|+|..|+|||||.+.+.+.. +.+..+++.+.+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeR 192 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGER 192 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCC
Confidence 3578999999999999999988732 2344555555543
No 461
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.31 E-value=0.35 Score=50.16 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=83.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|......++...+.... .....+.|.|..|+||+++|+.+..... . ....++.+.-..-....+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~--~~~~~~~~~c~~~~~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSP--R--ANGPFIALNMAAIPKDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCC--C--CCCCeEEEeCCCCCHHHHHHHh
Confidence 357888877788777775432 2234567999999999999999986321 1 1122232221111122222221
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcEEEEe
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSKILVT 311 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 311 (505)
+ .. ........ .............-.|+||++..........|...+..+. .+.+||.|
T Consensus 206 --f-g~------~~~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~ 275 (463)
T TIGR01818 206 --F-GH------EKGAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAA 275 (463)
T ss_pred --c-CC------CCCCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEe
Confidence 1 10 00000000 0000000111223458899998777777778887776432 14588888
Q ss_pred cCChHHHHhhcc--C-------CCCCceeCCCCC--hhhhHHHHHH
Q 037039 312 TRSRKVASIMGT--R-------GGTTGYNLQGLP--FEDCLSLFMK 346 (505)
Q Consensus 312 TR~~~va~~~~~--~-------~~~~~~~l~~L~--~~~~~~Lf~~ 346 (505)
|...-- ..+.. . -....+.+.+|. .+|--.|...
T Consensus 276 ~~~~l~-~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~ 320 (463)
T TIGR01818 276 THQNLE-ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARH 320 (463)
T ss_pred CCCCHH-HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHH
Confidence 864421 11000 0 001357788888 4555444443
No 462
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.30 E-value=0.1 Score=50.85 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=58.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
-..+.|+|..|+|||||++.+... .... ..++.+.-........ ..... + ... ............+.+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~-~~iv~ied~~El~~~~--~~~~~-l----~~~-~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKD-ERIITIEDTREIFLPH--PNYVH-L----FYS-KGGQGLAKVTPKDLLQ 212 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCcc-ccEEEEcCccccCCCC--CCEEE-E----Eec-CCCCCcCccCHHHHHH
Confidence 368899999999999999988863 2111 1222221111111100 00000 0 000 0011111233566677
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
..|+..+=.|++|.+.. .+.+.. ...+..+..| ++.|+...+...
T Consensus 213 ~~Lr~~pd~ii~gE~r~--~e~~~~-l~a~~~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 213 SCLRMRPDRIILGELRG--DEAFDF-IRAVNTGHPG--SITTLHAGSPEE 257 (308)
T ss_pred HHhcCCCCeEEEeccCC--HHHHHH-HHHHhcCCCe--EEEEEeCCCHHH
Confidence 78888888899999954 455543 3444333222 467776655443
No 463
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.29 E-value=0.27 Score=51.16 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|....+..+...+.... .....+.|.|.+|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 468999888888877775432 22345779999999999999999874
No 464
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=94.29 E-value=0.13 Score=43.47 Aligned_cols=93 Identities=15% Similarity=0.365 Sum_probs=53.7
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHH--HHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHH
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTA--VAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIE 247 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt--LA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 247 (505)
+++.-|+++|.+--. .++.++|+|-|||-+|||. +|..||.+ .-|.-+|.. ++++-++.-
T Consensus 36 eeLGlLVDFmaEl~K--~~Gh~lIGiRGmPRVGKTEsivAasVcAn---------KrW~f~SST-----likQTvRs~-- 97 (192)
T PF11868_consen 36 EELGLLVDFMAELFK--EEGHKLIGIRGMPRVGKTESIVAASVCAN---------KRWLFLSST-----LIKQTVRSQ-- 97 (192)
T ss_pred hHhccHHHHHHHHHH--hcCceEEeecCCCccCchhHHHHHhhhcC---------ceEEEeeHH-----HHHHHHHHH--
Confidence 445555555533211 3567899999999999995 66777763 347766642 333222211
Q ss_pred hhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCC---CChhhHHHHHHhhc
Q 037039 248 QIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWN---EDPEAWRNLKSLLL 300 (505)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~---~~~~~~~~l~~~l~ 300 (505)
|..---+...+.|+|.+-+ .+..-|..+...+.
T Consensus 98 --------------------L~~dE~~~~~ifIIDGivSt~r~~e~H~~Lvreim~ 133 (192)
T PF11868_consen 98 --------------------LIEDEYNENNIFIIDGIVSTRRSNERHWQLVREIMR 133 (192)
T ss_pred --------------------hhhcccCcCcEEEEeeeeeeccCCHHHHHHHHHHHc
Confidence 0000013457888999853 24566776666543
No 465
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.28 E-value=0.096 Score=51.15 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=37.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~ 238 (505)
..-.++-|+|.+|+|||+++.+++-...... .=..++|+.....+++..+.
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~ 147 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM 147 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH
Confidence 4467889999999999999988875322211 11268899988888877643
No 466
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.21 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.-..++|+|..|+|||||++.+.+.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999999988873
No 467
>PLN02796 D-glycerate 3-kinase
Probab=94.28 E-value=0.04 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+-+|+|.|..|+|||||++.+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 4567999999999999999999986
No 468
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.27 E-value=0.56 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|+|..|.|||||++.++.-
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999864
No 469
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.27 E-value=0.062 Score=48.81 Aligned_cols=21 Identities=43% Similarity=0.793 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999988544
No 470
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.26 E-value=0.052 Score=56.03 Aligned_cols=22 Identities=32% Similarity=0.200 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.-..|+|++|+|||||++.|.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999999998
No 471
>PRK04182 cytidylate kinase; Provisional
Probab=94.26 E-value=0.032 Score=49.50 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 472
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.26 E-value=0.19 Score=47.72 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=36.3
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELII 246 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~ 246 (505)
.++.|-|.+|+|||++|..+..+.-.... ..++|++. .-+..++...++....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~Sl--Em~~~~l~~R~la~~s 72 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSL--EMSEEELAARLLARLS 72 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEES--SS-HHHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcC--CCCHHHHHHHHHHHhh
Confidence 57888899999999999999875433222 45666544 4566677777776663
No 473
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.25 E-value=0.028 Score=48.64 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
|++|+|+.|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 474
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.25 E-value=0.12 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|+|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999988873
No 475
>PRK14532 adenylate kinase; Provisional
Probab=94.24 E-value=0.03 Score=50.21 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.4
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999976
No 476
>PLN03073 ABC transporter F family; Provisional
Probab=94.24 E-value=0.43 Score=52.14 Aligned_cols=53 Identities=21% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
.|...+-.++-+|+||.--+ .|...-..+...+... .| .||++|.+......+
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~ 690 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGS 690 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHh
Confidence 34556667888999999743 2444444455555443 34 588888888766554
No 477
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.096 Score=52.11 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=33.7
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC--CCCCcEEEEecCChHHHHhh
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG--GANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~va~~~ 321 (505)
-.|.+.|..++=+|+||.--+. |...-..+...+.. ...|..+|++|.+..-+..+
T Consensus 143 valARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 201 (356)
T PRK11650 143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTL 201 (356)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3456667778889999997532 33333334443332 12366788888887655443
No 478
>PRK13946 shikimate kinase; Provisional
Probab=94.21 E-value=0.032 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.|.++|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 479
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.42 Score=44.17 Aligned_cols=56 Identities=29% Similarity=0.262 Sum_probs=38.3
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccC
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF 220 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 220 (505)
+++-|=.+++++|.+...-+-- -+-+.++-|.++|++|.|||-+|+.|.| +...+|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 5566677777777765432210 0123456678999999999999999999 554444
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.17 E-value=0.53 Score=50.95 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
|...+-.++=+|+||.--+ .|....+.|...+... .| .||++|.+...+..+
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vSHd~~~~~~~ 503 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QG-TVLLVSHDRQFVDNT 503 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHHHh
Confidence 4455566778999998743 3555556666666554 34 588888887766544
No 481
>PHA02774 E1; Provisional
Probab=94.17 E-value=0.2 Score=52.06 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.-+..+..+|.. .++..-+.|+|++|.|||.+|..+.+
T Consensus 419 ~fl~~lk~~l~~-----~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 419 SFLTALKDFLKG-----IPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 345566666642 24456889999999999999999887
No 482
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.17 E-value=0.43 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-..++|+|+.|.|||||++.+...
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 483
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.14 E-value=0.096 Score=51.31 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=37.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEecCCCCHHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH----FELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~ 239 (505)
+.-.++-|+|++|+|||+++.+++-....... =..++|++....+++..+..
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 45678999999999999999888753221111 13788999888888766543
No 484
>PLN02348 phosphoribulokinase
Probab=94.14 E-value=0.04 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+++.+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 485
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.14 E-value=0.032 Score=50.26 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 486
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.14 E-value=0.084 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=23.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..++.|+|.+|+|||||...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999887
No 487
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.13 E-value=0.036 Score=48.76 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 488
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.12 E-value=0.44 Score=51.52 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhhc
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~~ 322 (505)
.|...+-.++=+|+||.--+ .|...-..+...+... .| .||++|.+...+..++
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~ 494 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTT 494 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhC
Confidence 34555666788999999743 2445555555555544 35 5888888877665543
No 489
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.12 E-value=0.18 Score=51.98 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=34.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|....++++...+.... ..... +.|.|..|+||+++|+.+..
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lA~~ih~ 184 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIA---PSDIT-VLLLGESGTGKEVLARALHQ 184 (445)
T ss_pred cceeecCHHHHHHHHHHHHHh---CCCCC-EEEECCCCcCHHHHHHHHHH
Confidence 458888888888877775432 12333 45999999999999999986
No 490
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.12 E-value=1.3 Score=41.06 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=78.7
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC-CCCHHHHHHHHHHHHHHhhhhccccCCCCCchH---
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE-DFGERQIMRKIMELIIEQIMTNYVFQGDLNTHR--- 263 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~--- 263 (505)
.+.+++.++|.-|+|||.+.+.+..... =+.++-+.+.. ..+...+...|+..+.. +...+...
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~--------~p~~~~~~~~e 116 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLES--------QPKVNVNAVLE 116 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhcc--------CccchhHHHHH
Confidence 4457999999999999999995443111 01222233332 34555666666666632 11111111
Q ss_pred -HHHHHHHHc-CCce-EEEEEecCCCCChhhHHHHHHhhcCCCCCc---EEEEecCCh-------HHHHhhccCCCCCc-
Q 037039 264 -LQQILRDCL-NGKR-YLLVMDDVWNEDPEAWRNLKSLLLGGANGS---KILVTTRSR-------KVASIMGTRGGTTG- 329 (505)
Q Consensus 264 -l~~~l~~~L-~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTTR~~-------~va~~~~~~~~~~~- 329 (505)
....|.... +++| ..+++|+.........+.++.....-..++ +|+..-..+ .+...... ....
T Consensus 117 ~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir 194 (269)
T COG3267 117 QIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIR 194 (269)
T ss_pred HHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEE
Confidence 223333333 4677 899999998766667776665544222222 233322111 11111111 1123
Q ss_pred eeCCCCChhhhHHHHHHh
Q 037039 330 YNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 330 ~~l~~L~~~~~~~Lf~~~ 347 (505)
|++.|++.++...++...
T Consensus 195 ~~l~P~~~~~t~~yl~~~ 212 (269)
T COG3267 195 IELPPLTEAETGLYLRHR 212 (269)
T ss_pred EecCCcChHHHHHHHHHH
Confidence 899999999887777654
No 491
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.12 E-value=0.029 Score=52.88 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 377999999999999999986
No 492
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.10 E-value=0.038 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|+|+.|+||||+|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999988754
No 493
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.36 Score=50.85 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=73.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCC-------CCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGK-------SETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++-|..+.++.+.+.+..+.... -....-|.++|++|+|||-||..+.... . .-+++|-.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~-~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------N-LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------C-eeEEEecCH----
Confidence 456677777777777776543210 0123457899999999999999987632 1 124555332
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------ChhhHHHHHHhhcC--C
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPEAWRNLKSLLLG--G 302 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~--~ 302 (505)
++ +.... +.++....+.+.+.-.-|+|.|.||...+. .....++|...+.. +
T Consensus 736 El----L~KyI-----------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 736 EL----LSKYI-----------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG 800 (952)
T ss_pred HH----HHHHh-----------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc
Confidence 22 22221 112233455566666789999999998642 12345555555543 3
Q ss_pred CCCcEEEE-ecCCh
Q 037039 303 ANGSKILV-TTRSR 315 (505)
Q Consensus 303 ~~gs~iiv-TTR~~ 315 (505)
-.|--|+- |||..
T Consensus 801 l~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 801 LDGVYILAATSRPD 814 (952)
T ss_pred cceEEEEEecCCcc
Confidence 44655554 55544
No 494
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.09 E-value=0.39 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+++.|.|.+|.||||+++.+..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~ 390 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAARE 390 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHH
Confidence 4788999999999999999875
No 495
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.09 E-value=0.084 Score=48.83 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=15.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..|.|++|.||||++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 788999999999986666555
No 496
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.08 E-value=0.12 Score=49.98 Aligned_cols=91 Identities=19% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHH
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQ 266 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 266 (505)
-+.-+++-|+|+.|+||||||..+.. ..+..-..++|+.....+++. .+..++..+..-.... +....+...
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~-P~~~E~al~ 121 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQ-PDTGEQALW 121 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE--SSHHHHHH
T ss_pred cccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEec-CCcHHHHHH
Confidence 34557999999999999999998886 344444567899877766653 3333433222111111 112233333
Q ss_pred HHHHHcC-CceEEEEEecCC
Q 037039 267 ILRDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 267 ~l~~~L~-~kr~LlVlDdvw 285 (505)
.....++ +.--++|+|.|-
T Consensus 122 ~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CT
T ss_pred HHHHHhhcccccEEEEecCc
Confidence 4444443 444589999984
No 497
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.08 E-value=0.047 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 498
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.08 E-value=0.14 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|+|.|.+|+||||+++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.06 E-value=0.043 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++.|.|++|+|||||++.++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 67889999999999999999984
No 500
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.06 E-value=0.049 Score=50.80 Aligned_cols=20 Identities=25% Similarity=0.332 Sum_probs=17.0
Q ss_pred EEecCCChHHHHHHHHhccc
Q 037039 195 IVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 195 I~G~gGiGKTtLA~~v~~~~ 214 (505)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998743
Done!