Query 037039
Match_columns 505
No_of_seqs 376 out of 2685
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 13:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-48 1.8E-52 405.6 19.5 296 166-487 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.6E-39 1.9E-43 342.6 21.4 271 163-478 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-37 8.7E-42 356.0 22.7 295 157-486 118-453 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.8E-34 2E-38 302.8 24.2 288 158-482 119-449 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.8 2.1E-20 7E-25 151.8 3.1 78 9-86 4-83 (115)
6 1w5s_A Origin recognition comp 99.6 7.5E-15 2.6E-19 148.4 14.3 288 160-457 19-372 (412)
7 2qen_A Walker-type ATPase; unk 99.5 1.2E-12 4.2E-17 128.9 17.8 282 161-479 10-349 (350)
8 2fna_A Conserved hypothetical 99.4 6.2E-12 2.1E-16 124.1 20.9 279 161-478 11-356 (357)
9 1fnn_A CDC6P, cell division co 99.4 1E-11 3.5E-16 124.2 20.4 312 160-485 14-387 (389)
10 2v1u_A Cell division control p 99.4 5E-11 1.7E-15 119.0 21.8 283 160-457 16-352 (387)
11 2qby_B CDC6 homolog 3, cell di 99.4 3.2E-11 1.1E-15 120.5 19.4 179 162-347 19-209 (384)
12 2qby_A CDC6 homolog 1, cell di 99.1 5.2E-11 1.8E-15 118.8 7.0 179 160-347 17-209 (386)
13 1njg_A DNA polymerase III subu 99.1 3.1E-10 1.1E-14 105.3 10.1 167 163-347 23-197 (250)
14 2chg_A Replication factor C sm 99.0 1.2E-09 4.2E-14 99.7 11.9 155 163-347 17-173 (226)
15 1hqc_A RUVB; extended AAA-ATPa 98.9 2.9E-09 9.8E-14 103.6 8.6 150 163-347 12-180 (324)
16 1sxj_B Activator 1 37 kDa subu 98.8 1.2E-08 4E-13 99.0 11.2 155 163-347 21-178 (323)
17 1iqp_A RFCS; clamp loader, ext 98.7 5.2E-08 1.8E-12 94.6 9.7 155 163-347 25-181 (327)
18 1jbk_A CLPB protein; beta barr 98.7 3.4E-08 1.2E-12 87.7 7.1 45 163-213 22-66 (195)
19 3te6_A Regulatory protein SIR3 98.7 9.2E-08 3.1E-12 91.6 10.5 173 164-347 21-210 (318)
20 1jr3_A DNA polymerase III subu 98.5 1.2E-06 4.1E-11 86.6 13.7 170 163-347 16-190 (373)
21 2chq_A Replication factor C sm 98.4 9.3E-07 3.2E-11 85.3 10.5 152 163-347 17-173 (319)
22 3pvs_A Replication-associated 98.4 1.4E-06 5E-11 87.9 11.8 146 163-347 26-177 (447)
23 3pfi_A Holliday junction ATP-d 98.4 7.3E-06 2.5E-10 79.9 15.8 149 163-347 29-196 (338)
24 2p65_A Hypothetical protein PF 98.4 5.5E-07 1.9E-11 79.4 6.7 45 163-213 22-66 (187)
25 3h4m_A Proteasome-activating n 98.3 2.2E-06 7.4E-11 81.4 11.2 159 163-347 17-200 (285)
26 2z4s_A Chromosomal replication 98.3 1.4E-06 4.9E-11 88.0 9.5 132 190-347 130-275 (440)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.3 7.6E-06 2.6E-10 76.5 13.9 159 163-347 6-189 (262)
28 3n70_A Transport activator; si 98.3 1.5E-06 5.1E-11 73.5 7.7 115 164-315 2-116 (145)
29 3bos_A Putative DNA replicatio 98.3 2.1E-06 7.2E-11 79.1 9.0 143 163-347 28-186 (242)
30 3u61_B DNA polymerase accessor 98.3 4.3E-06 1.5E-10 81.0 11.2 149 163-346 26-176 (324)
31 3ec2_A DNA replication protein 98.2 2.7E-06 9.1E-11 74.8 8.7 121 169-315 20-143 (180)
32 1sxj_D Activator 1 41 kDa subu 98.2 8.5E-06 2.9E-10 79.8 13.0 166 163-347 37-204 (353)
33 3syl_A Protein CBBX; photosynt 98.2 6.3E-06 2.2E-10 79.2 11.4 161 164-347 32-216 (309)
34 1sxj_E Activator 1 40 kDa subu 98.2 9.6E-06 3.3E-10 79.5 12.1 165 163-347 14-205 (354)
35 1d2n_A N-ethylmaleimide-sensit 98.2 9.6E-06 3.3E-10 76.4 11.2 153 163-345 33-209 (272)
36 1l8q_A Chromosomal replication 98.1 1.5E-05 5.3E-10 77.1 11.7 131 189-347 36-178 (324)
37 3co5_A Putative two-component 98.1 2.7E-06 9.1E-11 71.8 5.4 110 163-313 4-114 (143)
38 1sxj_A Activator 1 95 kDa subu 98.0 4.6E-06 1.6E-10 86.2 6.7 164 163-347 39-221 (516)
39 3uk6_A RUVB-like 2; hexameric 98.0 7.4E-05 2.5E-09 73.5 14.9 47 163-213 44-93 (368)
40 2gno_A DNA polymerase III, gam 98.0 2.6E-05 8.8E-10 74.5 10.9 148 167-347 1-151 (305)
41 2w58_A DNAI, primosome compone 98.0 8.8E-06 3E-10 72.9 7.1 62 163-228 25-90 (202)
42 1xwi_A SKD1 protein; VPS4B, AA 98.0 6.1E-05 2.1E-09 72.7 13.3 50 163-212 12-67 (322)
43 1a5t_A Delta prime, HOLB; zinc 98.0 5.7E-05 2E-09 73.3 12.5 72 274-347 107-179 (334)
44 1sxj_C Activator 1 40 kDa subu 97.9 3E-05 1E-09 75.6 10.2 154 163-346 25-180 (340)
45 3cf0_A Transitional endoplasmi 97.9 0.00013 4.4E-09 69.7 14.3 159 163-347 15-198 (301)
46 1qvr_A CLPB protein; coiled co 97.9 3.7E-05 1.3E-09 84.4 11.6 156 163-346 170-343 (854)
47 3eie_A Vacuolar protein sortin 97.9 7.3E-05 2.5E-09 72.2 12.2 157 163-346 18-195 (322)
48 3d8b_A Fidgetin-like protein 1 97.9 4.6E-05 1.6E-09 74.8 10.6 50 163-212 84-139 (357)
49 4fcw_A Chaperone protein CLPB; 97.9 5.5E-05 1.9E-09 72.5 11.0 138 163-314 17-169 (311)
50 2zan_A Vacuolar protein sortin 97.8 0.00015 5.2E-09 73.2 13.7 50 163-212 134-189 (444)
51 2bjv_A PSP operon transcriptio 97.8 4.4E-05 1.5E-09 71.5 9.1 47 163-213 6-52 (265)
52 2qp9_X Vacuolar protein sortin 97.8 0.00012 4E-09 71.7 11.8 51 163-213 51-107 (355)
53 3b9p_A CG5977-PA, isoform A; A 97.8 0.00017 5.8E-09 68.6 12.3 50 163-212 21-76 (297)
54 2kjq_A DNAA-related protein; s 97.8 2.4E-05 8E-10 66.4 5.2 23 191-213 37-59 (149)
55 1lv7_A FTSH; alpha/beta domain 97.7 0.00018 6.3E-09 66.9 11.5 50 163-212 12-67 (257)
56 3hu3_A Transitional endoplasmi 97.7 5.5E-05 1.9E-09 77.1 8.1 159 163-347 204-384 (489)
57 1ojl_A Transcriptional regulat 97.7 7.5E-05 2.6E-09 71.4 8.5 164 163-346 2-188 (304)
58 3vfd_A Spastin; ATPase, microt 97.7 0.00018 6.2E-09 71.4 11.3 50 163-212 115-170 (389)
59 4b4t_J 26S protease regulatory 97.7 0.00029 9.8E-09 69.2 11.9 162 159-346 143-330 (405)
60 3pxg_A Negative regulator of g 97.7 0.00011 3.8E-09 74.7 9.2 44 163-212 180-223 (468)
61 4b4t_L 26S protease subunit RP 97.7 0.00031 1.1E-08 70.0 12.2 156 163-346 181-363 (437)
62 1r6b_X CLPA protein; AAA+, N-t 97.6 0.0003 1E-08 76.3 12.3 158 163-347 186-361 (758)
63 1ofh_A ATP-dependent HSL prote 97.6 0.00012 4.1E-09 70.0 7.9 50 163-212 15-72 (310)
64 2r62_A Cell division protease 97.6 3.9E-05 1.3E-09 72.0 4.2 51 163-213 11-67 (268)
65 3pxi_A Negative regulator of g 97.6 0.0004 1.4E-08 75.2 12.7 157 163-346 491-673 (758)
66 2ce7_A Cell division protein F 97.6 0.0004 1.4E-08 70.3 11.7 159 163-347 16-198 (476)
67 4b4t_H 26S protease regulatory 97.5 0.00047 1.6E-08 68.6 11.2 50 163-212 209-265 (467)
68 4b4t_K 26S protease regulatory 97.5 0.00059 2E-08 67.9 11.7 54 159-212 167-228 (428)
69 2r44_A Uncharacterized protein 97.4 0.00027 9.1E-09 68.4 7.7 152 163-347 27-197 (331)
70 4b4t_M 26S protease regulatory 97.4 0.00021 7.3E-09 71.1 6.9 54 159-212 176-237 (434)
71 2qgz_A Helicase loader, putati 97.4 0.00011 3.7E-09 70.4 4.6 41 170-213 135-175 (308)
72 3pxi_A Negative regulator of g 97.4 0.00038 1.3E-08 75.4 8.9 151 163-347 180-337 (758)
73 2cvh_A DNA repair and recombin 97.2 0.0015 5E-08 58.9 10.1 91 190-286 20-116 (220)
74 3t15_A Ribulose bisphosphate c 97.2 0.0005 1.7E-08 65.3 7.2 26 188-213 34-59 (293)
75 4b4t_I 26S protease regulatory 97.2 0.00088 3E-08 66.0 8.9 54 159-212 177-238 (437)
76 1qvr_A CLPB protein; coiled co 97.2 0.0015 5E-08 71.7 11.7 138 163-314 558-710 (854)
77 3m6a_A ATP-dependent protease 97.2 0.0012 4.2E-08 68.3 10.4 50 163-212 81-130 (543)
78 3cf2_A TER ATPase, transitiona 97.2 0.0019 6.6E-08 69.2 11.7 159 163-347 204-384 (806)
79 1in4_A RUVB, holliday junction 97.0 0.0044 1.5E-07 59.9 11.9 49 163-212 25-73 (334)
80 2x8a_A Nuclear valosin-contain 97.0 0.0038 1.3E-07 58.4 10.7 49 163-212 10-66 (274)
81 2dhr_A FTSH; AAA+ protein, hex 96.9 0.005 1.7E-07 62.6 11.5 51 163-213 31-87 (499)
82 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0039 1.3E-07 67.5 11.2 132 163-314 458-607 (758)
83 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00057 2E-08 64.8 3.4 34 190-228 123-156 (331)
84 1ye8_A Protein THEP1, hypothet 96.8 0.0067 2.3E-07 52.7 10.0 69 272-342 96-170 (178)
85 1ypw_A Transitional endoplasmi 96.8 0.0036 1.2E-07 67.9 9.9 50 163-212 204-260 (806)
86 1um8_A ATP-dependent CLP prote 96.8 0.004 1.4E-07 61.2 9.3 50 163-212 21-94 (376)
87 1rz3_A Hypothetical protein rb 96.6 0.0022 7.4E-08 57.1 5.5 42 168-212 3-44 (201)
88 2c9o_A RUVB-like 1; hexameric 96.6 0.0035 1.2E-07 63.5 7.2 50 163-213 37-86 (456)
89 1g5t_A COB(I)alamin adenosyltr 96.5 0.0073 2.5E-07 52.9 7.9 119 191-315 29-163 (196)
90 3hr8_A Protein RECA; alpha and 96.4 0.0063 2.2E-07 59.0 7.6 90 188-285 59-149 (356)
91 2pze_A Cystic fibrosis transme 96.1 0.089 3E-06 47.6 13.5 53 267-319 140-194 (229)
92 2zr9_A Protein RECA, recombina 96.1 0.01 3.5E-07 57.5 7.3 89 189-285 60-149 (349)
93 1xp8_A RECA protein, recombina 96.0 0.012 4.1E-07 57.4 7.5 89 189-285 73-162 (366)
94 3c8u_A Fructokinase; YP_612366 96.0 0.0044 1.5E-07 55.4 3.9 37 172-212 8-44 (208)
95 3lw7_A Adenylate kinase relate 96.0 0.0032 1.1E-07 54.2 3.0 20 191-210 2-21 (179)
96 2b8t_A Thymidine kinase; deoxy 96.0 0.0051 1.7E-07 55.5 4.2 114 190-315 12-126 (223)
97 2i1q_A DNA repair and recombin 96.0 0.016 5.3E-07 55.6 8.0 96 189-285 97-214 (322)
98 1zp6_A Hypothetical protein AT 96.0 0.0042 1.4E-07 54.5 3.6 24 190-213 9-32 (191)
99 3sr0_A Adenylate kinase; phosp 96.0 0.015 5.2E-07 51.7 7.2 93 192-299 2-97 (206)
100 3jvv_A Twitching mobility prot 95.9 0.0029 9.9E-08 61.5 2.5 113 191-320 124-236 (356)
101 2z43_A DNA repair and recombin 95.9 0.015 5.1E-07 55.9 7.5 96 189-285 106-213 (324)
102 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0057 2E-07 62.2 4.7 43 163-213 22-64 (500)
103 2pjz_A Hypothetical protein ST 95.9 0.034 1.2E-06 51.5 9.7 51 267-319 138-189 (263)
104 1odf_A YGR205W, hypothetical 3 95.9 0.0059 2E-07 57.6 4.4 25 188-212 29-53 (290)
105 1qhx_A CPT, protein (chloramph 95.9 0.0036 1.2E-07 54.2 2.7 22 191-212 4-25 (178)
106 3dm5_A SRP54, signal recogniti 95.9 0.11 3.6E-06 51.8 13.5 24 189-212 99-122 (443)
107 1ly1_A Polynucleotide kinase; 95.9 0.0041 1.4E-07 53.9 3.0 22 191-212 3-24 (181)
108 3kb2_A SPBC2 prophage-derived 95.8 0.0039 1.3E-07 53.6 2.7 22 191-212 2-23 (173)
109 1ixz_A ATP-dependent metallopr 95.8 0.0076 2.6E-07 55.6 4.8 50 163-213 16-72 (254)
110 3tui_C Methionine import ATP-b 95.8 0.066 2.3E-06 51.8 11.4 58 265-322 171-231 (366)
111 3io5_A Recombination and repai 95.8 0.02 6.8E-07 54.1 7.4 87 192-286 30-122 (333)
112 3vaa_A Shikimate kinase, SK; s 95.7 0.0049 1.7E-07 54.6 3.1 23 190-212 25-47 (199)
113 3tqc_A Pantothenate kinase; bi 95.7 0.0093 3.2E-07 56.9 4.9 46 165-212 69-114 (321)
114 1v5w_A DMC1, meiotic recombina 95.7 0.029 9.8E-07 54.3 8.5 51 188-238 120-174 (343)
115 3uie_A Adenylyl-sulfate kinase 95.7 0.0062 2.1E-07 54.0 3.5 24 189-212 24-47 (200)
116 1kgd_A CASK, peripheral plasma 95.7 0.0053 1.8E-07 53.4 3.0 22 191-212 6-27 (180)
117 1kag_A SKI, shikimate kinase I 95.6 0.0045 1.6E-07 53.3 2.4 22 191-212 5-26 (173)
118 3hws_A ATP-dependent CLP prote 95.6 0.0076 2.6E-07 58.9 4.2 49 164-212 16-73 (363)
119 2rhm_A Putative kinase; P-loop 95.6 0.0067 2.3E-07 53.2 3.4 24 189-212 4-27 (193)
120 3trf_A Shikimate kinase, SK; a 95.6 0.0055 1.9E-07 53.4 2.7 23 190-212 5-27 (185)
121 4gp7_A Metallophosphoesterase; 95.5 0.0074 2.5E-07 52.0 3.4 23 190-212 9-31 (171)
122 1vma_A Cell division protein F 95.5 0.051 1.8E-06 51.5 9.5 25 188-212 102-126 (306)
123 2orw_A Thymidine kinase; TMTK, 95.5 0.015 5.1E-07 50.8 5.3 22 191-212 4-25 (184)
124 3asz_A Uridine kinase; cytidin 95.5 0.0078 2.7E-07 53.7 3.6 24 189-212 5-28 (211)
125 2ga8_A Hypothetical 39.9 kDa p 95.5 0.012 4E-07 56.7 4.9 45 166-212 2-46 (359)
126 1nks_A Adenylate kinase; therm 95.5 0.0071 2.4E-07 52.9 3.2 22 191-212 2-23 (194)
127 1iy2_A ATP-dependent metallopr 95.5 0.011 3.6E-07 55.5 4.5 50 163-213 40-96 (278)
128 1knq_A Gluconate kinase; ALFA/ 95.5 0.0087 3E-07 51.6 3.7 24 189-212 7-30 (175)
129 4eun_A Thermoresistant glucoki 95.5 0.0071 2.4E-07 53.6 3.1 23 190-212 29-51 (200)
130 1ex7_A Guanylate kinase; subst 95.4 0.006 2E-07 53.3 2.4 22 191-212 2-23 (186)
131 3tr0_A Guanylate kinase, GMP k 95.4 0.0073 2.5E-07 53.6 3.0 22 191-212 8-29 (205)
132 1uf9_A TT1252 protein; P-loop, 95.4 0.0082 2.8E-07 53.1 3.4 25 188-212 6-30 (203)
133 2bdt_A BH3686; alpha-beta prot 95.4 0.0082 2.8E-07 52.6 3.3 22 191-212 3-24 (189)
134 2qt1_A Nicotinamide riboside k 95.4 0.0096 3.3E-07 53.0 3.8 25 188-212 19-43 (207)
135 2p5t_B PEZT; postsegregational 95.4 0.011 3.8E-07 54.5 4.3 40 172-212 15-54 (253)
136 1u94_A RECA protein, recombina 95.4 0.021 7.1E-07 55.5 6.3 45 189-235 62-106 (356)
137 3cf2_A TER ATPase, transitiona 95.4 0.042 1.4E-06 58.9 9.1 50 163-212 477-533 (806)
138 1jr3_D DNA polymerase III, del 95.4 0.19 6.5E-06 48.4 13.2 129 190-347 18-154 (343)
139 1z47_A CYSA, putative ABC-tran 95.4 0.069 2.4E-06 51.6 9.8 57 266-322 154-213 (355)
140 3tau_A Guanylate kinase, GMP k 95.3 0.0084 2.9E-07 53.5 3.2 23 190-212 8-30 (208)
141 1uj2_A Uridine-cytidine kinase 95.3 0.008 2.7E-07 55.4 3.1 25 188-212 20-44 (252)
142 1gvn_B Zeta; postsegregational 95.3 0.013 4.4E-07 55.2 4.5 25 188-212 31-55 (287)
143 1g8p_A Magnesium-chelatase 38 95.3 0.007 2.4E-07 58.7 2.8 45 163-213 24-68 (350)
144 3t61_A Gluconokinase; PSI-biol 95.3 0.0063 2.1E-07 54.0 2.2 23 190-212 18-40 (202)
145 1zuh_A Shikimate kinase; alpha 95.3 0.0077 2.6E-07 51.6 2.6 25 188-212 5-29 (168)
146 2c95_A Adenylate kinase 1; tra 95.3 0.0087 3E-07 52.6 3.0 23 190-212 9-31 (196)
147 1kht_A Adenylate kinase; phosp 95.3 0.0081 2.8E-07 52.5 2.8 22 191-212 4-25 (192)
148 1tev_A UMP-CMP kinase; ploop, 95.3 0.0088 3E-07 52.4 3.0 23 190-212 3-25 (196)
149 1ukz_A Uridylate kinase; trans 95.2 0.0099 3.4E-07 52.7 3.3 25 188-212 13-37 (203)
150 2j41_A Guanylate kinase; GMP, 95.2 0.0094 3.2E-07 52.9 3.2 23 190-212 6-28 (207)
151 3a00_A Guanylate kinase, GMP k 95.2 0.0071 2.4E-07 52.9 2.3 22 191-212 2-23 (186)
152 1y63_A LMAJ004144AAA protein; 95.2 0.0088 3E-07 52.2 2.9 24 189-212 9-32 (184)
153 3iij_A Coilin-interacting nucl 95.2 0.0078 2.7E-07 52.2 2.5 23 190-212 11-33 (180)
154 2if2_A Dephospho-COA kinase; a 95.2 0.009 3.1E-07 53.0 3.0 22 191-212 2-23 (204)
155 2ze6_A Isopentenyl transferase 95.2 0.0098 3.4E-07 54.9 3.3 22 191-212 2-23 (253)
156 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.6E-07 52.6 3.3 22 191-212 3-24 (206)
157 3umf_A Adenylate kinase; rossm 95.2 0.01 3.5E-07 53.3 3.2 25 188-212 27-51 (217)
158 3upu_A ATP-dependent DNA helic 95.2 0.036 1.2E-06 56.0 7.6 23 191-213 46-68 (459)
159 1via_A Shikimate kinase; struc 95.2 0.0073 2.5E-07 52.2 2.1 21 192-212 6-26 (175)
160 2qor_A Guanylate kinase; phosp 95.2 0.0075 2.6E-07 53.6 2.2 24 189-212 11-34 (204)
161 2jaq_A Deoxyguanosine kinase; 95.2 0.0091 3.1E-07 52.8 2.8 21 192-212 2-22 (205)
162 1cke_A CK, MSSA, protein (cyti 95.1 0.01 3.4E-07 53.6 3.1 22 191-212 6-27 (227)
163 3kl4_A SRP54, signal recogniti 95.1 0.22 7.5E-06 49.4 12.8 24 189-212 96-119 (433)
164 2bbw_A Adenylate kinase 4, AK4 95.1 0.01 3.5E-07 54.4 3.1 23 190-212 27-49 (246)
165 2yvu_A Probable adenylyl-sulfa 95.1 0.015 5E-07 50.8 3.8 25 188-212 11-35 (186)
166 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.012 4.1E-07 54.6 3.4 23 190-212 4-26 (260)
167 3lda_A DNA repair protein RAD5 95.1 0.063 2.1E-06 52.9 8.7 48 189-236 177-228 (400)
168 1lvg_A Guanylate kinase, GMP k 95.0 0.0091 3.1E-07 52.8 2.4 22 191-212 5-26 (198)
169 2iyv_A Shikimate kinase, SK; t 95.0 0.0076 2.6E-07 52.5 1.9 22 191-212 3-24 (184)
170 3cm0_A Adenylate kinase; ATP-b 95.0 0.013 4.6E-07 50.9 3.5 22 191-212 5-26 (186)
171 2cdn_A Adenylate kinase; phosp 95.0 0.012 4.2E-07 52.0 3.2 24 189-212 19-42 (201)
172 1qf9_A UMP/CMP kinase, protein 95.0 0.015 5E-07 50.9 3.7 23 190-212 6-28 (194)
173 2bwj_A Adenylate kinase 5; pho 95.0 0.011 3.9E-07 52.0 2.9 23 190-212 12-34 (199)
174 2plr_A DTMP kinase, probable t 94.9 0.013 4.3E-07 52.2 3.1 23 191-213 5-27 (213)
175 3ice_A Transcription terminati 94.9 0.056 1.9E-06 52.4 7.7 23 190-212 174-196 (422)
176 3aez_A Pantothenate kinase; tr 94.9 0.014 4.7E-07 55.7 3.5 25 188-212 88-112 (312)
177 1xjc_A MOBB protein homolog; s 94.9 0.013 4.5E-07 50.2 3.0 24 189-212 3-26 (169)
178 1n0w_A DNA repair protein RAD5 94.9 0.039 1.3E-06 50.1 6.4 47 190-236 24-74 (243)
179 1znw_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 52.1 3.1 22 191-212 21-42 (207)
180 1e6c_A Shikimate kinase; phosp 94.9 0.0098 3.4E-07 51.1 2.0 22 191-212 3-24 (173)
181 2ewv_A Twitching motility prot 94.8 0.077 2.6E-06 51.8 8.7 112 190-319 136-248 (372)
182 2jeo_A Uridine-cytidine kinase 94.8 0.016 5.3E-07 53.2 3.4 24 189-212 24-47 (245)
183 2vli_A Antibiotic resistance p 94.8 0.0086 2.9E-07 52.0 1.6 23 190-212 5-27 (183)
184 3tlx_A Adenylate kinase 2; str 94.8 0.021 7.1E-07 52.3 4.2 24 189-212 28-51 (243)
185 1htw_A HI0065; nucleotide-bind 94.8 0.017 5.7E-07 49.0 3.3 23 190-212 33-55 (158)
186 1aky_A Adenylate kinase; ATP:A 94.8 0.013 4.6E-07 52.6 2.8 23 190-212 4-26 (220)
187 1nn5_A Similar to deoxythymidy 94.8 0.015 5.1E-07 51.9 3.1 23 190-212 9-31 (215)
188 2pt5_A Shikimate kinase, SK; a 94.8 0.014 4.6E-07 49.9 2.7 21 192-212 2-22 (168)
189 3ney_A 55 kDa erythrocyte memb 94.7 0.016 5.5E-07 51.0 3.1 24 189-212 18-41 (197)
190 2pez_A Bifunctional 3'-phospho 94.7 0.018 6E-07 49.9 3.4 23 190-212 5-27 (179)
191 1tue_A Replication protein E1; 94.7 0.02 6.8E-07 50.5 3.6 37 171-212 44-80 (212)
192 2pbr_A DTMP kinase, thymidylat 94.7 0.014 4.8E-07 51.1 2.8 21 192-212 2-22 (195)
193 2wwf_A Thymidilate kinase, put 94.7 0.016 5.3E-07 51.7 3.0 23 190-212 10-32 (212)
194 4e22_A Cytidylate kinase; P-lo 94.7 0.016 5.3E-07 53.5 3.1 23 190-212 27-49 (252)
195 2grj_A Dephospho-COA kinase; T 94.7 0.018 6.2E-07 50.6 3.3 25 188-212 10-34 (192)
196 1z6g_A Guanylate kinase; struc 94.7 0.013 4.4E-07 52.7 2.4 22 191-212 24-45 (218)
197 1zd8_A GTP:AMP phosphotransfer 94.7 0.017 5.7E-07 52.3 3.2 23 190-212 7-29 (227)
198 3be4_A Adenylate kinase; malar 94.7 0.016 5.5E-07 52.0 3.0 24 189-212 4-27 (217)
199 1rj9_A FTSY, signal recognitio 94.6 0.017 5.9E-07 54.8 3.3 24 189-212 101-124 (304)
200 2f6r_A COA synthase, bifunctio 94.6 0.02 6.9E-07 53.7 3.7 24 188-211 73-96 (281)
201 1sq5_A Pantothenate kinase; P- 94.6 0.037 1.3E-06 52.6 5.6 25 188-212 78-102 (308)
202 1sky_E F1-ATPase, F1-ATP synth 94.6 0.077 2.6E-06 53.0 8.0 39 191-231 152-191 (473)
203 2hf9_A Probable hydrogenase ni 94.6 0.027 9.1E-07 50.7 4.4 25 189-213 37-61 (226)
204 1gtv_A TMK, thymidylate kinase 94.6 0.01 3.6E-07 52.9 1.6 21 192-212 2-22 (214)
205 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.13 4.6E-06 49.2 9.4 107 191-318 172-278 (330)
206 3l0o_A Transcription terminati 94.6 0.17 5.7E-06 49.1 9.8 35 173-212 163-197 (427)
207 3fwy_A Light-independent proto 94.6 0.019 6.5E-07 54.7 3.4 25 188-212 46-70 (314)
208 4a74_A DNA repair and recombin 94.5 0.021 7.2E-07 51.5 3.4 46 189-234 24-73 (231)
209 2f1r_A Molybdopterin-guanine d 94.5 0.014 4.9E-07 50.2 2.1 22 191-212 3-24 (171)
210 1zak_A Adenylate kinase; ATP:A 94.5 0.016 5.4E-07 52.2 2.5 23 190-212 5-27 (222)
211 2z0h_A DTMP kinase, thymidylat 94.4 0.018 6.3E-07 50.5 2.8 21 192-212 2-22 (197)
212 1s96_A Guanylate kinase, GMP k 94.4 0.02 7E-07 51.4 3.1 23 190-212 16-38 (219)
213 2wsm_A Hydrogenase expression/ 94.4 0.027 9.1E-07 50.5 3.9 40 168-213 14-53 (221)
214 3fb4_A Adenylate kinase; psych 94.4 0.019 6.4E-07 51.4 2.8 21 192-212 2-22 (216)
215 1m7g_A Adenylylsulfate kinase; 94.4 0.022 7.5E-07 50.8 3.2 23 190-212 25-47 (211)
216 2v54_A DTMP kinase, thymidylat 94.4 0.02 6.8E-07 50.6 2.9 22 191-212 5-26 (204)
217 1g41_A Heat shock protein HSLU 94.4 0.028 9.7E-07 55.9 4.3 50 163-212 15-72 (444)
218 2ehv_A Hypothetical protein PH 94.4 0.021 7E-07 52.3 3.1 23 190-212 30-52 (251)
219 2yhs_A FTSY, cell division pro 94.3 0.093 3.2E-06 52.8 7.9 42 189-233 292-333 (503)
220 1vht_A Dephospho-COA kinase; s 94.3 0.025 8.4E-07 50.7 3.5 23 190-212 4-26 (218)
221 2pcj_A ABC transporter, lipopr 94.3 0.022 7.7E-07 51.4 3.2 22 191-212 31-52 (224)
222 2onk_A Molybdate/tungstate ABC 94.3 0.022 7.5E-07 52.0 3.1 22 191-212 25-46 (240)
223 2i3b_A HCR-ntpase, human cance 94.3 0.018 6.3E-07 50.4 2.4 22 192-213 3-24 (189)
224 3tif_A Uncharacterized ABC tra 94.3 0.022 7.5E-07 51.9 3.0 22 191-212 32-53 (235)
225 3dl0_A Adenylate kinase; phosp 94.3 0.02 7E-07 51.2 2.8 21 192-212 2-22 (216)
226 3b9q_A Chloroplast SRP recepto 94.2 0.026 8.8E-07 53.5 3.5 24 189-212 99-122 (302)
227 3lnc_A Guanylate kinase, GMP k 94.2 0.015 5.2E-07 52.7 1.8 22 191-212 28-50 (231)
228 3ozx_A RNAse L inhibitor; ATP 94.1 0.16 5.5E-06 52.1 9.5 23 190-212 25-47 (538)
229 2px0_A Flagellar biosynthesis 94.1 0.027 9.1E-07 53.3 3.3 23 190-212 105-127 (296)
230 2ged_A SR-beta, signal recogni 94.1 0.038 1.3E-06 48.1 4.1 26 188-213 46-71 (193)
231 3e70_C DPA, signal recognition 94.0 0.032 1.1E-06 53.5 3.7 25 188-212 127-151 (328)
232 3nwj_A ATSK2; P loop, shikimat 94.0 0.022 7.4E-07 52.4 2.4 22 191-212 49-70 (250)
233 3gfo_A Cobalt import ATP-bindi 94.0 0.027 9.1E-07 52.6 3.0 55 266-320 152-209 (275)
234 2cbz_A Multidrug resistance-as 94.0 0.027 9.3E-07 51.3 3.0 52 268-319 138-193 (237)
235 3r20_A Cytidylate kinase; stru 94.0 0.028 9.5E-07 50.9 3.0 23 190-212 9-31 (233)
236 3ake_A Cytidylate kinase; CMP 94.0 0.026 8.9E-07 50.0 2.8 21 192-212 4-24 (208)
237 1b0u_A Histidine permease; ABC 93.9 0.027 9.3E-07 52.2 3.0 22 191-212 33-54 (262)
238 2ffh_A Protein (FFH); SRP54, s 93.9 0.096 3.3E-06 51.9 6.9 23 190-212 98-120 (425)
239 1e4v_A Adenylate kinase; trans 93.9 0.029 1E-06 50.1 3.0 21 192-212 2-22 (214)
240 3b85_A Phosphate starvation-in 93.8 0.022 7.4E-07 50.8 2.0 22 191-212 23-44 (208)
241 1ji0_A ABC transporter; ATP bi 93.8 0.03 1E-06 51.2 3.0 22 191-212 33-54 (240)
242 4g1u_C Hemin import ATP-bindin 93.8 0.029 1E-06 52.0 3.0 22 191-212 38-59 (266)
243 3j16_B RLI1P; ribosome recycli 93.8 0.33 1.1E-05 50.5 11.2 22 191-212 104-125 (608)
244 3p32_A Probable GTPase RV1496/ 93.8 0.058 2E-06 52.4 5.2 37 172-212 65-101 (355)
245 1g6h_A High-affinity branched- 93.8 0.03 1E-06 51.7 3.0 22 191-212 34-55 (257)
246 2olj_A Amino acid ABC transpor 93.8 0.031 1E-06 51.8 3.0 22 191-212 51-72 (263)
247 1cr0_A DNA primase/helicase; R 93.8 0.089 3E-06 49.5 6.3 23 191-213 36-58 (296)
248 1np6_A Molybdopterin-guanine d 93.8 0.033 1.1E-06 48.0 3.0 23 190-212 6-28 (174)
249 3k1j_A LON protease, ATP-depen 93.8 0.035 1.2E-06 58.2 3.7 42 163-212 41-82 (604)
250 2xb4_A Adenylate kinase; ATP-b 93.7 0.029 1E-06 50.5 2.8 21 192-212 2-22 (223)
251 3d3q_A TRNA delta(2)-isopenten 93.7 0.034 1.2E-06 53.3 3.3 22 191-212 8-29 (340)
252 1sgw_A Putative ABC transporte 93.7 0.027 9.1E-07 50.4 2.4 22 191-212 36-57 (214)
253 1mv5_A LMRA, multidrug resista 93.7 0.034 1.2E-06 50.9 3.2 22 191-212 29-50 (243)
254 2og2_A Putative signal recogni 93.7 0.036 1.2E-06 53.8 3.4 24 189-212 156-179 (359)
255 2d2e_A SUFC protein; ABC-ATPas 93.7 0.033 1.1E-06 51.2 3.1 22 191-212 30-51 (250)
256 2ff7_A Alpha-hemolysin translo 93.7 0.033 1.1E-06 51.1 3.0 22 191-212 36-57 (247)
257 1vpl_A ABC transporter, ATP-bi 93.6 0.034 1.2E-06 51.3 3.0 54 267-320 156-211 (256)
258 3a8t_A Adenylate isopentenyltr 93.6 0.04 1.4E-06 52.6 3.6 23 190-212 40-62 (339)
259 2zu0_C Probable ATP-dependent 93.6 0.034 1.2E-06 51.6 3.1 53 268-320 175-229 (267)
260 1ak2_A Adenylate kinase isoenz 93.6 0.033 1.1E-06 50.5 2.9 23 190-212 16-38 (233)
261 1oix_A RAS-related protein RAB 93.6 0.048 1.6E-06 47.6 3.8 25 189-213 28-52 (191)
262 2wji_A Ferrous iron transport 93.6 0.051 1.7E-06 46.1 3.9 23 191-213 4-26 (165)
263 1ltq_A Polynucleotide kinase; 93.6 0.034 1.2E-06 52.6 3.0 22 191-212 3-24 (301)
264 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.035 1.2E-06 50.0 3.0 22 191-212 24-45 (235)
265 2ixe_A Antigen peptide transpo 93.5 0.035 1.2E-06 51.7 3.0 53 267-319 166-221 (271)
266 3zvl_A Bifunctional polynucleo 93.5 0.036 1.2E-06 55.2 3.2 25 188-212 256-280 (416)
267 2ghi_A Transport protein; mult 93.5 0.036 1.2E-06 51.3 3.0 22 191-212 47-68 (260)
268 2qi9_C Vitamin B12 import ATP- 93.5 0.036 1.2E-06 50.8 3.0 22 191-212 27-48 (249)
269 2dr3_A UPF0273 protein PH0284; 93.5 0.053 1.8E-06 49.3 4.1 39 190-230 23-61 (247)
270 1pzn_A RAD51, DNA repair and r 93.5 0.083 2.8E-06 51.1 5.6 46 188-233 129-178 (349)
271 3crm_A TRNA delta(2)-isopenten 93.4 0.037 1.3E-06 52.6 3.0 22 191-212 6-27 (323)
272 2yz2_A Putative ABC transporte 93.4 0.038 1.3E-06 51.3 3.0 53 267-319 148-202 (266)
273 2ihy_A ABC transporter, ATP-bi 93.4 0.038 1.3E-06 51.7 3.0 22 191-212 48-69 (279)
274 2nq2_C Hypothetical ABC transp 93.4 0.039 1.3E-06 50.8 3.0 55 267-321 138-195 (253)
275 1yrb_A ATP(GTP)binding protein 93.4 0.049 1.7E-06 50.2 3.7 25 188-212 12-36 (262)
276 2vp4_A Deoxynucleoside kinase; 93.4 0.043 1.5E-06 49.7 3.2 25 188-212 18-42 (230)
277 2iw3_A Elongation factor 3A; a 93.4 0.36 1.2E-05 52.9 10.8 53 267-321 558-611 (986)
278 3exa_A TRNA delta(2)-isopenten 93.3 0.046 1.6E-06 51.6 3.4 22 191-212 4-25 (322)
279 3bh0_A DNAB-like replicative h 93.3 0.11 3.6E-06 49.6 6.0 51 190-244 68-118 (315)
280 3thx_A DNA mismatch repair pro 93.3 0.27 9.2E-06 53.8 9.7 48 273-321 739-791 (934)
281 2eyu_A Twitching motility prot 93.2 0.046 1.6E-06 50.6 3.2 113 190-319 25-137 (261)
282 2v9p_A Replication protein E1; 93.2 0.043 1.5E-06 51.8 3.1 23 190-212 126-148 (305)
283 1q3t_A Cytidylate kinase; nucl 93.2 0.046 1.6E-06 49.7 3.2 25 188-212 14-38 (236)
284 2zej_A Dardarin, leucine-rich 93.2 0.042 1.4E-06 47.6 2.8 22 192-213 4-25 (184)
285 1nlf_A Regulatory protein REPA 93.2 0.043 1.5E-06 51.3 3.0 22 191-212 31-52 (279)
286 1zu4_A FTSY; GTPase, signal re 93.2 0.049 1.7E-06 52.0 3.4 24 189-212 104-127 (320)
287 1a7j_A Phosphoribulokinase; tr 93.2 0.02 6.8E-07 54.0 0.6 24 189-212 4-27 (290)
288 3foz_A TRNA delta(2)-isopenten 93.2 0.05 1.7E-06 51.3 3.3 24 189-212 9-32 (316)
289 2wjg_A FEOB, ferrous iron tran 93.1 0.069 2.4E-06 46.1 4.1 25 189-213 6-30 (188)
290 2ck3_D ATP synthase subunit be 93.1 0.26 9E-06 49.1 8.5 53 174-232 142-194 (482)
291 3e1s_A Exodeoxyribonuclease V, 93.0 0.043 1.5E-06 56.9 2.9 22 191-212 205-226 (574)
292 3sop_A Neuronal-specific septi 92.9 0.054 1.8E-06 50.4 3.2 21 192-212 4-24 (270)
293 3nh6_A ATP-binding cassette SU 92.8 0.044 1.5E-06 51.9 2.5 22 191-212 81-102 (306)
294 2fz4_A DNA repair protein RAD2 92.8 1.9 6.5E-05 38.8 13.5 105 193-312 111-226 (237)
295 4a1f_A DNAB helicase, replicat 92.8 0.38 1.3E-05 46.0 9.1 51 191-245 47-97 (338)
296 1fx0_B ATP synthase beta chain 92.8 0.25 8.4E-06 49.5 7.8 50 191-241 166-216 (498)
297 1svm_A Large T antigen; AAA+ f 92.8 0.056 1.9E-06 52.8 3.2 25 188-212 167-191 (377)
298 2dyk_A GTP-binding protein; GT 92.8 0.061 2.1E-06 45.0 3.1 23 191-213 2-24 (161)
299 3vr4_D V-type sodium ATPase su 92.7 0.081 2.8E-06 52.4 4.3 39 191-231 152-194 (465)
300 2f9l_A RAB11B, member RAS onco 92.7 0.066 2.3E-06 47.0 3.4 24 190-213 5-28 (199)
301 2bbs_A Cystic fibrosis transme 92.7 0.06 2E-06 50.6 3.2 53 267-319 169-223 (290)
302 2v3c_C SRP54, signal recogniti 92.7 0.07 2.4E-06 53.2 3.8 24 189-212 98-121 (432)
303 4eaq_A DTMP kinase, thymidylat 92.7 0.062 2.1E-06 48.6 3.2 25 189-213 25-49 (229)
304 1nij_A Hypothetical protein YJ 92.7 0.056 1.9E-06 51.6 3.0 24 189-212 3-26 (318)
305 2ocp_A DGK, deoxyguanosine kin 92.6 0.064 2.2E-06 48.8 3.3 23 190-212 2-24 (241)
306 2lkc_A Translation initiation 92.6 0.081 2.8E-06 45.2 3.7 26 188-213 6-31 (178)
307 1ls1_A Signal recognition part 92.6 0.066 2.3E-06 50.5 3.4 23 190-212 98-120 (295)
308 3llm_A ATP-dependent RNA helic 92.6 0.15 5.3E-06 46.1 5.8 21 191-211 77-97 (235)
309 3kta_A Chromosome segregation 92.6 0.069 2.3E-06 46.1 3.2 22 191-212 27-48 (182)
310 2qmh_A HPR kinase/phosphorylas 92.6 0.063 2.2E-06 47.0 2.9 23 191-213 35-57 (205)
311 2xxa_A Signal recognition part 92.5 0.07 2.4E-06 53.2 3.6 25 188-212 98-122 (433)
312 2j37_W Signal recognition part 92.5 0.13 4.4E-06 52.2 5.6 25 188-212 99-123 (504)
313 2ce2_X GTPase HRAS; signaling 92.5 0.063 2.2E-06 45.0 2.8 22 192-213 5-26 (166)
314 3fvq_A Fe(3+) IONS import ATP- 92.5 0.067 2.3E-06 51.7 3.2 57 266-322 147-206 (359)
315 3end_A Light-independent proto 92.4 0.071 2.4E-06 50.5 3.4 25 188-212 39-63 (307)
316 2hxs_A RAB-26, RAS-related pro 92.4 0.11 3.7E-06 44.3 4.2 25 189-213 5-29 (178)
317 1z2a_A RAS-related protein RAB 92.4 0.08 2.7E-06 44.6 3.3 24 190-213 5-28 (168)
318 1u0j_A DNA replication protein 92.3 0.12 4.1E-06 47.6 4.6 37 172-212 90-126 (267)
319 1svi_A GTP-binding protein YSX 92.3 0.096 3.3E-06 45.5 3.9 25 189-213 22-46 (195)
320 1tq4_A IIGP1, interferon-induc 92.3 0.082 2.8E-06 52.2 3.8 25 188-212 67-91 (413)
321 1z08_A RAS-related protein RAB 92.3 0.093 3.2E-06 44.3 3.7 25 189-213 5-29 (170)
322 2nzj_A GTP-binding protein REM 92.2 0.097 3.3E-06 44.5 3.7 24 190-213 4-27 (175)
323 3q72_A GTP-binding protein RAD 92.2 0.073 2.5E-06 44.8 2.9 22 192-213 4-25 (166)
324 2gj8_A MNME, tRNA modification 92.2 0.078 2.7E-06 45.3 3.1 23 191-213 5-27 (172)
325 2r9v_A ATP synthase subunit al 92.2 0.21 7.3E-06 50.1 6.5 38 191-232 176-215 (515)
326 1fzq_A ADP-ribosylation factor 92.1 0.1 3.5E-06 45.0 3.8 25 189-213 15-39 (181)
327 2aka_B Dynamin-1; fusion prote 92.1 0.18 6.2E-06 47.3 5.8 42 172-213 8-49 (299)
328 3cmu_A Protein RECA, recombina 92.1 0.1 3.6E-06 61.1 4.8 90 188-285 1425-1515(2050)
329 1p5z_B DCK, deoxycytidine kina 92.1 0.056 1.9E-06 50.0 2.1 25 188-212 22-46 (263)
330 1lw7_A Transcriptional regulat 92.0 0.081 2.8E-06 51.6 3.3 23 190-212 170-192 (365)
331 2erx_A GTP-binding protein DI- 91.9 0.083 2.8E-06 44.6 2.9 23 191-213 4-26 (172)
332 3eph_A TRNA isopentenyltransfe 91.9 0.092 3.1E-06 51.4 3.4 22 191-212 3-24 (409)
333 3con_A GTPase NRAS; structural 91.8 0.075 2.6E-06 46.1 2.5 23 191-213 22-44 (190)
334 3rlf_A Maltose/maltodextrin im 91.8 0.083 2.8E-06 51.5 3.1 56 267-322 143-201 (381)
335 4edh_A DTMP kinase, thymidylat 91.8 0.22 7.6E-06 44.3 5.7 24 190-213 6-29 (213)
336 3pqc_A Probable GTP-binding pr 91.8 0.11 3.9E-06 44.9 3.8 24 190-213 23-46 (195)
337 2fn4_A P23, RAS-related protei 91.8 0.13 4.5E-06 43.8 4.1 26 188-213 7-32 (181)
338 1nrj_B SR-beta, signal recogni 91.8 0.084 2.9E-06 47.0 2.9 26 188-213 10-35 (218)
339 3dzd_A Transcriptional regulat 91.8 0.65 2.2E-05 45.1 9.4 47 163-213 129-175 (368)
340 2yyz_A Sugar ABC transporter, 91.7 0.086 2.9E-06 51.1 3.1 57 266-322 142-201 (359)
341 2cxx_A Probable GTP-binding pr 91.7 0.1 3.4E-06 45.1 3.3 22 192-213 3-24 (190)
342 1pui_A ENGB, probable GTP-bind 91.7 0.067 2.3E-06 47.3 2.2 24 190-213 26-49 (210)
343 2it1_A 362AA long hypothetical 91.7 0.088 3E-06 51.0 3.1 56 266-321 142-200 (362)
344 1f6b_A SAR1; gtpases, N-termin 91.7 0.12 3.9E-06 45.4 3.6 23 191-213 26-48 (198)
345 3q85_A GTP-binding protein REM 91.7 0.12 4E-06 43.6 3.6 22 191-212 3-24 (169)
346 3d31_A Sulfate/molybdate ABC t 91.6 0.078 2.7E-06 51.1 2.6 56 266-321 136-194 (348)
347 3f9v_A Minichromosome maintena 91.6 0.06 2E-06 56.2 1.9 22 192-213 329-350 (595)
348 4akg_A Glutathione S-transfera 91.6 0.72 2.5E-05 56.1 11.2 82 190-298 1609-1690(2695)
349 2www_A Methylmalonic aciduria 91.6 0.1 3.6E-06 50.4 3.5 24 189-212 73-96 (349)
350 1ek0_A Protein (GTP-binding pr 91.6 0.088 3E-06 44.4 2.7 22 192-213 5-26 (170)
351 1c1y_A RAS-related protein RAP 91.6 0.084 2.9E-06 44.4 2.5 22 192-213 5-26 (167)
352 1g29_1 MALK, maltose transport 91.5 0.093 3.2E-06 51.2 3.1 56 267-322 149-207 (372)
353 1u8z_A RAS-related protein RAL 91.5 0.12 4.3E-06 43.2 3.6 23 191-213 5-27 (168)
354 1kao_A RAP2A; GTP-binding prot 91.5 0.087 3E-06 44.2 2.5 23 191-213 4-26 (167)
355 1v43_A Sugar-binding transport 91.5 0.094 3.2E-06 51.0 3.1 56 266-321 150-208 (372)
356 3gmt_A Adenylate kinase; ssgci 91.5 0.085 2.9E-06 47.5 2.5 23 190-212 8-30 (230)
357 1z0j_A RAB-22, RAS-related pro 91.5 0.12 4.1E-06 43.5 3.4 24 190-213 6-29 (170)
358 3ld9_A DTMP kinase, thymidylat 91.5 0.22 7.5E-06 44.7 5.2 26 188-213 19-44 (223)
359 2axn_A 6-phosphofructo-2-kinas 91.5 0.1 3.5E-06 53.4 3.5 24 189-212 34-57 (520)
360 2qm8_A GTPase/ATPase; G protei 91.5 0.11 3.7E-06 50.1 3.4 25 188-212 53-77 (337)
361 1ky3_A GTP-binding protein YPT 91.5 0.12 4E-06 44.2 3.4 26 188-213 6-31 (182)
362 2c61_A A-type ATP synthase non 91.4 0.16 5.4E-06 50.7 4.6 42 191-232 153-196 (469)
363 3ihw_A Centg3; RAS, centaurin, 91.4 0.09 3.1E-06 45.5 2.6 24 190-213 20-43 (184)
364 2p67_A LAO/AO transport system 91.4 0.19 6.5E-06 48.4 5.1 25 188-212 54-78 (341)
365 1m7b_A RND3/RHOE small GTP-bin 91.4 0.13 4.3E-06 44.4 3.5 25 189-213 6-30 (184)
366 1cp2_A CP2, nitrogenase iron p 91.4 0.11 3.9E-06 47.9 3.5 22 191-212 2-23 (269)
367 3tw8_B RAS-related protein RAB 91.4 0.13 4.4E-06 43.9 3.5 26 188-213 7-32 (181)
368 2h92_A Cytidylate kinase; ross 91.3 0.078 2.7E-06 47.3 2.2 22 191-212 4-25 (219)
369 2r6a_A DNAB helicase, replicat 91.3 0.95 3.2E-05 45.4 10.4 50 190-242 203-252 (454)
370 1oxx_K GLCV, glucose, ABC tran 91.3 0.073 2.5E-06 51.5 2.0 57 266-322 149-208 (353)
371 2qnr_A Septin-2, protein NEDD5 91.3 0.1 3.5E-06 49.3 3.1 21 192-212 20-40 (301)
372 3thx_B DNA mismatch repair pro 91.3 0.62 2.1E-05 50.8 9.5 49 273-322 750-803 (918)
373 3t5g_A GTP-binding protein RHE 91.3 0.14 4.7E-06 43.8 3.7 25 189-213 5-29 (181)
374 1wms_A RAB-9, RAB9, RAS-relate 91.3 0.13 4.4E-06 43.8 3.4 26 188-213 5-30 (177)
375 1r8s_A ADP-ribosylation factor 91.2 0.096 3.3E-06 44.0 2.5 20 193-212 3-22 (164)
376 2obl_A ESCN; ATPase, hydrolase 91.2 0.1 3.4E-06 50.4 2.9 24 190-213 71-94 (347)
377 4bas_A ADP-ribosylation factor 91.2 0.13 4.6E-06 44.7 3.5 27 188-214 15-41 (199)
378 3k53_A Ferrous iron transport 91.2 0.14 4.7E-06 47.6 3.8 24 190-213 3-26 (271)
379 1m2o_B GTP-binding protein SAR 91.2 0.1 3.5E-06 45.4 2.7 23 191-213 24-46 (190)
380 3cbq_A GTP-binding protein REM 91.2 0.12 4E-06 45.3 3.1 24 189-212 22-45 (195)
381 3gqb_B V-type ATP synthase bet 91.1 0.16 5.6E-06 50.3 4.4 25 191-215 148-172 (464)
382 2yv5_A YJEQ protein; hydrolase 91.1 0.16 5.3E-06 48.1 4.1 31 172-211 156-186 (302)
383 3gd7_A Fusion complex of cysti 91.1 0.12 4E-06 50.7 3.2 22 191-212 48-69 (390)
384 1z0f_A RAB14, member RAS oncog 91.0 0.15 5E-06 43.4 3.6 26 188-213 13-38 (179)
385 1moz_A ARL1, ADP-ribosylation 91.0 0.13 4.6E-06 44.0 3.3 25 189-213 17-41 (183)
386 3ch4_B Pmkase, phosphomevalona 91.0 0.15 5.3E-06 44.7 3.6 24 189-212 10-33 (202)
387 3t1o_A Gliding protein MGLA; G 91.0 0.1 3.5E-06 45.3 2.5 24 189-212 13-36 (198)
388 1ega_A Protein (GTP-binding pr 91.0 0.13 4.4E-06 48.6 3.4 26 188-213 6-31 (301)
389 1g16_A RAS-related protein SEC 91.0 0.15 5E-06 43.0 3.5 23 191-213 4-26 (170)
390 2gza_A Type IV secretion syste 91.0 0.099 3.4E-06 50.9 2.6 22 191-212 176-197 (361)
391 2y8e_A RAB-protein 6, GH09086P 91.0 0.12 4E-06 44.1 2.8 23 191-213 15-37 (179)
392 2qu8_A Putative nucleolar GTP- 91.0 0.14 4.9E-06 45.9 3.6 25 189-213 28-52 (228)
393 2afh_E Nitrogenase iron protei 90.9 0.14 4.7E-06 48.0 3.6 22 191-212 3-24 (289)
394 3llu_A RAS-related GTP-binding 90.9 0.13 4.4E-06 45.0 3.1 24 190-213 20-43 (196)
395 1r2q_A RAS-related protein RAB 90.9 0.12 4.2E-06 43.5 2.9 24 190-213 6-29 (170)
396 3cr8_A Sulfate adenylyltranfer 90.9 0.11 3.9E-06 53.4 3.1 24 189-212 368-391 (552)
397 1ypw_A Transitional endoplasmi 90.8 0.089 3E-06 57.0 2.4 51 163-213 477-534 (806)
398 2bme_A RAB4A, RAS-related prot 90.8 0.17 6E-06 43.4 3.9 26 188-213 8-33 (186)
399 1j8m_F SRP54, signal recogniti 90.8 0.092 3.1E-06 49.5 2.2 23 190-212 98-120 (297)
400 2r8r_A Sensor protein; KDPD, P 90.8 0.12 4E-06 46.3 2.7 112 192-315 8-127 (228)
401 1upt_A ARL1, ADP-ribosylation 90.8 0.15 5E-06 43.1 3.4 24 190-213 7-30 (171)
402 1zj6_A ADP-ribosylation factor 90.8 0.28 9.5E-06 42.2 5.2 25 189-213 15-39 (187)
403 2iwr_A Centaurin gamma 1; ANK 90.8 0.092 3.1E-06 44.9 2.0 24 190-213 7-30 (178)
404 3lv8_A DTMP kinase, thymidylat 90.7 0.28 9.6E-06 44.4 5.3 24 190-213 27-50 (236)
405 3bc1_A RAS-related protein RAB 90.7 0.16 5.5E-06 43.8 3.6 26 188-213 9-34 (195)
406 2qe7_A ATP synthase subunit al 90.7 0.23 8E-06 49.8 5.1 38 191-232 163-202 (502)
407 3c5c_A RAS-like protein 12; GD 90.6 0.15 5.2E-06 44.1 3.3 24 190-213 21-44 (187)
408 1mh1_A RAC1; GTP-binding, GTPa 90.6 0.16 5.6E-06 43.5 3.5 24 190-213 5-28 (186)
409 3iev_A GTP-binding protein ERA 90.6 0.16 5.4E-06 48.2 3.6 27 187-213 7-33 (308)
410 1gwn_A RHO-related GTP-binding 90.6 0.13 4.4E-06 45.5 2.8 24 190-213 28-51 (205)
411 2fg5_A RAB-22B, RAS-related pr 90.6 0.13 4.5E-06 44.7 2.8 24 190-213 23-46 (192)
412 3lxx_A GTPase IMAP family memb 90.5 0.16 5.6E-06 45.9 3.6 26 188-213 27-52 (239)
413 3fdi_A Uncharacterized protein 90.5 0.13 4.5E-06 45.3 2.9 23 190-212 6-28 (201)
414 2cjw_A GTP-binding protein GEM 90.5 0.13 4.5E-06 44.8 2.8 23 190-212 6-28 (192)
415 3kkq_A RAS-related protein M-R 90.5 0.19 6.6E-06 43.0 3.9 25 189-213 17-41 (183)
416 1fx0_A ATP synthase alpha chai 90.5 0.22 7.4E-06 50.0 4.6 38 191-232 164-203 (507)
417 1zbd_A Rabphilin-3A; G protein 90.5 0.14 4.8E-06 44.9 3.0 25 189-213 7-31 (203)
418 3bwd_D RAC-like GTP-binding pr 90.5 0.13 4.3E-06 44.1 2.7 23 191-213 9-31 (182)
419 3v9p_A DTMP kinase, thymidylat 90.5 0.21 7.3E-06 44.9 4.2 24 190-213 25-48 (227)
420 1bif_A 6-phosphofructo-2-kinas 90.5 0.13 4.5E-06 52.0 3.1 23 190-212 39-61 (469)
421 2bov_A RAla, RAS-related prote 90.4 0.17 5.9E-06 44.2 3.6 25 189-213 13-37 (206)
422 2efe_B Small GTP-binding prote 90.4 0.16 5.4E-06 43.4 3.2 25 189-213 11-35 (181)
423 1f2t_A RAD50 ABC-ATPase; DNA d 90.4 0.17 5.8E-06 42.2 3.3 22 191-212 24-45 (149)
424 2atv_A RERG, RAS-like estrogen 90.4 0.13 4.4E-06 44.9 2.7 24 190-213 28-51 (196)
425 4tmk_A Protein (thymidylate ki 90.4 0.33 1.1E-05 43.2 5.4 23 191-213 4-26 (213)
426 3oes_A GTPase rhebl1; small GT 90.4 0.13 4.5E-06 45.0 2.7 25 189-213 23-47 (201)
427 4dsu_A GTPase KRAS, isoform 2B 90.4 0.16 5.6E-06 43.6 3.3 23 191-213 5-27 (189)
428 2b6h_A ADP-ribosylation factor 90.4 0.19 6.6E-06 43.6 3.8 24 190-213 29-52 (192)
429 2oil_A CATX-8, RAS-related pro 90.4 0.18 6E-06 43.8 3.5 25 189-213 24-48 (193)
430 2o52_A RAS-related protein RAB 90.4 0.15 5.2E-06 44.7 3.1 25 189-213 24-48 (200)
431 2h17_A ADP-ribosylation factor 90.3 0.16 5.4E-06 43.6 3.1 24 190-213 21-44 (181)
432 3b1v_A Ferrous iron uptake tra 90.3 0.19 6.7E-06 46.6 3.9 23 191-213 4-26 (272)
433 3dz8_A RAS-related protein RAB 90.3 0.14 4.7E-06 44.5 2.7 24 190-213 23-46 (191)
434 1p9r_A General secretion pathw 90.3 0.26 8.9E-06 48.8 5.0 23 190-212 167-189 (418)
435 2a9k_A RAS-related protein RAL 90.3 0.17 5.9E-06 43.3 3.4 24 190-213 18-41 (187)
436 1ksh_A ARF-like protein 2; sma 90.3 0.18 6.3E-06 43.3 3.5 26 189-214 17-42 (186)
437 2fh5_B SR-beta, signal recogni 90.2 0.14 4.8E-06 45.3 2.8 25 189-213 6-30 (214)
438 1vg8_A RAS-related protein RAB 90.2 0.17 5.9E-06 44.3 3.4 26 188-213 6-31 (207)
439 3a1s_A Iron(II) transport prot 90.2 0.19 6.3E-06 46.3 3.7 25 189-213 4-28 (258)
440 2j1l_A RHO-related GTP-binding 90.2 0.16 5.4E-06 45.1 3.1 24 190-213 34-57 (214)
441 1jwy_B Dynamin A GTPase domain 90.2 0.29 9.9E-06 46.3 5.2 26 188-213 22-47 (315)
442 1q57_A DNA primase/helicase; d 90.2 1.9 6.4E-05 43.8 11.6 51 190-243 242-292 (503)
443 3iby_A Ferrous iron transport 90.2 0.17 5.8E-06 46.5 3.4 23 191-213 2-24 (256)
444 2q3h_A RAS homolog gene family 90.2 0.15 5.2E-06 44.6 2.9 24 190-213 20-43 (201)
445 3tkl_A RAS-related protein RAB 90.1 0.24 8.1E-06 42.9 4.2 25 189-213 15-39 (196)
446 3mfy_A V-type ATP synthase alp 90.1 0.37 1.3E-05 48.8 5.9 53 174-235 216-268 (588)
447 2rcn_A Probable GTPase ENGC; Y 90.1 0.15 5.2E-06 49.2 3.1 22 191-212 216-237 (358)
448 3hjn_A DTMP kinase, thymidylat 90.1 0.38 1.3E-05 42.2 5.4 21 192-212 2-22 (197)
449 2g6b_A RAS-related protein RAB 90.1 0.21 7.2E-06 42.5 3.7 26 188-213 8-33 (180)
450 2qag_B Septin-6, protein NEDD5 90.1 0.12 4.3E-06 51.0 2.5 21 193-213 45-65 (427)
451 2npi_A Protein CLP1; CLP1-PCF1 90.0 0.12 4.1E-06 51.9 2.4 22 191-212 139-160 (460)
452 4f4c_A Multidrug resistance pr 90.0 1.6 5.5E-05 50.0 11.9 117 192-312 1107-1273(1321)
453 2ew1_A RAS-related protein RAB 90.0 0.2 6.9E-06 44.0 3.6 25 189-213 25-49 (201)
454 3reg_A RHO-like small GTPase; 90.0 0.14 5E-06 44.4 2.7 25 189-213 22-46 (194)
455 2h57_A ADP-ribosylation factor 90.0 0.15 5.1E-06 44.1 2.8 25 190-214 21-45 (190)
456 3cmw_A Protein RECA, recombina 90.0 0.3 1E-05 56.6 5.7 86 191-284 384-470 (1706)
457 4gzl_A RAS-related C3 botulinu 90.0 0.18 6.2E-06 44.3 3.3 24 190-213 30-53 (204)
458 2zts_A Putative uncharacterize 89.9 0.16 5.5E-06 46.1 3.0 48 190-240 30-77 (251)
459 1zd9_A ADP-ribosylation factor 89.9 0.14 4.9E-06 44.2 2.5 24 190-213 22-45 (188)
460 2gf9_A RAS-related protein RAB 89.9 0.21 7.3E-06 43.1 3.7 25 189-213 21-45 (189)
461 1m8p_A Sulfate adenylyltransfe 89.9 0.28 9.7E-06 50.7 5.1 25 188-212 394-418 (573)
462 2j9r_A Thymidine kinase; TK1, 89.9 0.26 9E-06 43.6 4.2 112 190-316 28-139 (214)
463 1g8f_A Sulfate adenylyltransfe 89.9 0.2 6.7E-06 50.9 3.8 26 188-213 393-418 (511)
464 2g3y_A GTP-binding protein GEM 89.8 0.22 7.6E-06 44.3 3.7 23 190-212 37-59 (211)
465 3oaa_A ATP synthase subunit al 89.8 0.64 2.2E-05 46.5 7.3 39 191-233 163-203 (513)
466 2bcg_Y Protein YP2, GTP-bindin 89.8 0.16 5.6E-06 44.6 2.8 26 188-213 6-31 (206)
467 2gf0_A GTP-binding protein DI- 89.7 0.21 7.2E-06 43.4 3.5 24 190-213 8-31 (199)
468 4dhe_A Probable GTP-binding pr 89.7 0.15 5.2E-06 45.4 2.6 26 189-214 28-53 (223)
469 1x3s_A RAS-related protein RAB 89.7 0.16 5.5E-06 44.0 2.7 24 190-213 15-38 (195)
470 3def_A T7I23.11 protein; chlor 89.6 0.39 1.3E-05 44.2 5.4 25 189-213 35-59 (262)
471 1z06_A RAS-related protein RAB 89.6 0.21 7.1E-06 43.2 3.3 25 189-213 19-43 (189)
472 3cmu_A Protein RECA, recombina 89.6 0.3 1E-05 57.4 5.4 89 189-285 382-471 (2050)
473 3clv_A RAB5 protein, putative; 89.6 0.22 7.6E-06 43.3 3.5 24 190-213 7-30 (208)
474 2fv8_A H6, RHO-related GTP-bin 89.6 0.17 5.9E-06 44.5 2.8 24 190-213 25-48 (207)
475 2dpy_A FLII, flagellum-specifi 89.6 0.16 5.6E-06 50.6 2.9 24 190-213 157-180 (438)
476 2atx_A Small GTP binding prote 89.5 0.18 6.1E-06 43.8 2.8 25 189-213 17-41 (194)
477 1x6v_B Bifunctional 3'-phospho 89.5 0.19 6.5E-06 52.3 3.4 24 189-212 51-74 (630)
478 1h65_A Chloroplast outer envel 89.5 0.4 1.4E-05 44.3 5.4 25 189-213 38-62 (270)
479 1mky_A Probable GTP-binding pr 89.5 0.38 1.3E-05 48.1 5.6 48 166-213 151-203 (439)
480 2ck3_A ATP synthase subunit al 89.5 0.36 1.2E-05 48.5 5.3 43 191-233 163-211 (510)
481 2a5j_A RAS-related protein RAB 89.5 0.23 8E-06 43.0 3.6 24 190-213 21-44 (191)
482 3ozx_A RNAse L inhibitor; ATP 89.5 0.17 5.7E-06 52.0 3.0 22 191-212 295-316 (538)
483 2xtp_A GTPase IMAP family memb 89.4 0.23 7.8E-06 45.6 3.6 25 189-213 21-45 (260)
484 2il1_A RAB12; G-protein, GDP, 89.4 0.24 8.3E-06 43.0 3.6 24 190-213 26-49 (192)
485 2qag_C Septin-7; cell cycle, c 89.4 0.17 5.8E-06 50.1 2.8 21 193-213 34-54 (418)
486 4dkx_A RAS-related protein RAB 89.3 0.17 6E-06 45.1 2.7 22 192-213 15-36 (216)
487 3tqf_A HPR(Ser) kinase; transf 89.3 0.25 8.4E-06 42.1 3.4 22 191-212 17-38 (181)
488 2p5s_A RAS and EF-hand domain 89.3 0.2 7E-06 43.7 3.0 25 189-213 27-51 (199)
489 3euj_A Chromosome partition pr 89.2 0.19 6.5E-06 50.6 3.1 22 191-212 30-51 (483)
490 2gco_A H9, RHO-related GTP-bin 89.2 0.19 6.6E-06 44.0 2.8 24 190-213 25-48 (201)
491 1yqt_A RNAse L inhibitor; ATP- 89.2 0.18 6.3E-06 51.8 3.1 132 191-322 313-469 (538)
492 1c9k_A COBU, adenosylcobinamid 89.2 0.2 6.7E-06 43.2 2.8 35 193-233 2-36 (180)
493 2hup_A RAS-related protein RAB 89.2 0.25 8.6E-06 43.3 3.6 26 188-213 27-52 (201)
494 1yqt_A RNAse L inhibitor; ATP- 89.1 0.19 6.5E-06 51.7 3.1 22 191-212 48-69 (538)
495 3cph_A RAS-related protein SEC 88.9 0.19 6.5E-06 44.3 2.6 24 190-213 20-43 (213)
496 4hlc_A DTMP kinase, thymidylat 88.9 0.29 1E-05 43.2 3.8 23 191-213 3-25 (205)
497 1wf3_A GTP-binding protein; GT 88.9 0.24 8.2E-06 46.8 3.4 26 188-213 5-30 (301)
498 2x77_A ADP-ribosylation factor 88.9 0.25 8.4E-06 42.6 3.3 24 190-213 22-45 (189)
499 2f7s_A C25KG, RAS-related prot 88.9 0.21 7.3E-06 44.2 3.0 25 189-213 24-48 (217)
500 1t9h_A YLOQ, probable GTPase E 88.9 0.13 4.3E-06 48.7 1.4 22 191-212 174-195 (307)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-48 Score=405.58 Aligned_cols=296 Identities=17% Similarity=0.254 Sum_probs=227.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc--cccccccCCceEEEEecCCC--CHHHHHHHH
Q 037039 166 IGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN--DQRVKEHFELKIWIRVFEDF--GERQIMRKI 241 (505)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i 241 (505)
|||+.++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997643 34679999999999999999999998 67899999999999999875 788888888
Q ss_pred HHHHHHhhh-hccccCCCCCchHHHHHHHHHcCCc-eEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 242 MELIIEQIM-TNYVFQGDLNTHRLQQILRDCLNGK-RYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 242 l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~L~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
+.++..... .........+...+...+++.|+++ ||||||||||+.+...|.. .+||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 888853210 0000011122334788999999996 9999999999743223332 17999999999999998
Q ss_pred hhccCCCCCceeCCCCChhhhHHHHHHh----------------------------HHhhhhccCCCChHHHHHHHcccc
Q 037039 320 IMGTRGGTTGYNLQGLPFEDCLSLFMKF----------------------------RTLGSVLCGKTDKRDWEFVRDNEI 371 (505)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~----------------------------~~ig~~L~~~~~~~~w~~~~~~~~ 371 (505)
.++.. ...|.|++|+.++||+||.+. +++|+.|+.+ . .+|...+.+..
T Consensus 280 ~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l 355 (549)
T 2a5y_B 280 AASQT--CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKL 355 (549)
T ss_dssp GCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHH
T ss_pred HcCCC--CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHh
Confidence 76421 257999999999999999876 6678877665 2 23323233222
Q ss_pred ccccccCCcchhHHHhhHhcccHHHHHHHH-----------HhccCCCCCccchhhHHHHHHhc--cCcccCCCCCCHHH
Q 037039 372 WQLEQMERGILPTLRLSYDQLSPHLKQCFA-----------YCSIFPRDYQFYGDSLVQFWMAH--GLLQSHNKKEELED 438 (505)
Q Consensus 372 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~ls~fp~~~~i~~~~Li~~Wiae--g~i~~~~~~~~~e~ 438 (505)
+.. ...++.++|.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+....+..+.++
T Consensus 356 ~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 356 ESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred hcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 221 3467899999999999999999999 999999999998 8999999 99987653446788
Q ss_pred HHHHHHHHHHHcCCccccccCCCCCceeEEEeChhHHHHHHHhhhcccE
Q 037039 439 IGMRYLKELLSRFFFQDLSFGMLGMETFSFKMHDLMHDLAQQVAKDEFL 487 (505)
Q Consensus 439 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 487 (505)
+++ ||++|+++|||++...+ ...+|+|||+||+||+.++.++++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHH-HHHHHHHcCCeeEecCC----CceEEEeChHHHHHHHHHHHHHHH
Confidence 888 99999999999987654 356899999999999999987764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.6e-39 Score=342.55 Aligned_cols=271 Identities=21% Similarity=0.285 Sum_probs=214.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCc-eEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFEL-KIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 241 (505)
...|||+.++++|.++|... ...++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 44699999999999999753 23689999999999999999999998788999986 8999999999988888888
Q ss_pred HHHHHHhhhhccccCCC--C----CchHHHHHHHHHc---CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec
Q 037039 242 MELIIEQIMTNYVFQGD--L----NTHRLQQILRDCL---NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT 312 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~--~----~~~~l~~~l~~~L---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT 312 (505)
+..+.... .......+ . +...+...++..| .+||+||||||||+ .+.|+.+ + +||+|||||
T Consensus 203 l~lL~~i~-~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTT 272 (1221)
T 1vt4_I 203 QKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTT 272 (1221)
T ss_dssp HHHHHHHC-SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEEC
T ss_pred HHHHhhcC-cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEec
Confidence 87654321 00000000 0 1122556666655 78999999999997 4566553 2 789999999
Q ss_pred CChHHHHhhccCCCCCceeCC------CCChhhhHHHHHHh--------------------HHhhhhccCCC-ChHHHHH
Q 037039 313 RSRKVASIMGTRGGTTGYNLQ------GLPFEDCLSLFMKF--------------------RTLGSVLCGKT-DKRDWEF 365 (505)
Q Consensus 313 R~~~va~~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~--------------------~~ig~~L~~~~-~~~~w~~ 365 (505)
|+..++..+... ..+.++ +|+.+|||+||.+. ..+|+.|+.+. +..+|..
T Consensus 273 Rd~~Va~~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 273 RFKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp SCSHHHHHHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred cChHHHHhcCCC---eEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 999998755433 456666 99999999999875 66778887764 5677865
Q ss_pred HHccccccccccCCcchhHHHhhHhcccHHH-HHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCCHHHHHHHHH
Q 037039 366 VRDNEIWQLEQMERGILPTLRLSYDQLSPHL-KQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEELEDIGMRYL 444 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l 444 (505)
. ....+..+|.+||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++.++.+|
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L 408 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVV 408 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHH
Confidence 2 13568899999999999999 99999999999999999999999999887 13488999
Q ss_pred HHHHHcCCccccccCCCCCceeEEEeChhHHHHH
Q 037039 445 KELLSRFFFQDLSFGMLGMETFSFKMHDLMHDLA 478 (505)
Q Consensus 445 ~~L~~~sll~~~~~~~~~~~~~~~~mHdlv~~~a 478 (505)
++|+++|||+... ...+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~------~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQP------KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCS------SSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeC------CCCEEEehHHHHHHh
Confidence 9999999999842 235899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-37 Score=355.97 Aligned_cols=295 Identities=20% Similarity=0.296 Sum_probs=221.7
Q ss_pred CCCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc-cccC-CceEEEEecCCCCH
Q 037039 157 TQPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV-KEHF-ELKIWIRVFEDFGE 234 (505)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~ 234 (505)
..|..++.||||+.++++|.++|... +...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 34555578999999999999999754 356799999999999999999999997544 4556 57779999885432
Q ss_pred --HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCc--eEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEE
Q 037039 235 --RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGK--RYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILV 310 (505)
Q Consensus 235 --~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 310 (505)
...+..++..+..... .......+...+...++..|.++ |+||||||||+. ..|. ...+||+|||
T Consensus 194 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilv 262 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEES--FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILL 262 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCT--TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEE
T ss_pred HHHHHHHHHHHHhhhhcc--cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEE
Confidence 2334444444422110 00111223344888899999877 999999999863 3332 2367999999
Q ss_pred ecCChHHHHhhccCCCCCceeCCC-CChhhhHHHHHHh--------------------------HHhhhhccCCCChHHH
Q 037039 311 TTRSRKVASIMGTRGGTTGYNLQG-LPFEDCLSLFMKF--------------------------RTLGSVLCGKTDKRDW 363 (505)
Q Consensus 311 TTR~~~va~~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~--------------------------~~ig~~L~~~~~~~~w 363 (505)
|||++.++..+. +....+.+.+ |+.++|++||... ..+|+.|+.+. ..|
T Consensus 263 TtR~~~~~~~~~--~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 263 TTRDKSVTDSVM--GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp EESSTTTTTTCC--SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred EcCCHHHHHhhc--CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 999999885432 2236789996 9999999999865 67788887664 356
Q ss_pred HHHHcccccc----ccc----cCCcchhHHHhhHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCCC
Q 037039 364 EFVRDNEIWQ----LEQ----MERGILPTLRLSYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKEE 435 (505)
Q Consensus 364 ~~~~~~~~~~----~~~----~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~ 435 (505)
...+..+... +.. ....+..+|.+||+.||+++|.||+|||+||+++.|++..++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 6655433111 111 113588999999999999999999999999999999999999999553
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCCCceeEEEeChhHHHHHHHhhhccc
Q 037039 436 LEDIGMRYLKELLSRFFFQDLSFGMLGMETFSFKMHDLMHDLAQQVAKDEF 486 (505)
Q Consensus 436 ~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~ 486 (505)
++.++++|++|+++|||+....+ ...+|+|||+||+||+..+.+|.
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~----~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNG----KSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESS----SSEEEECCHHHHHHHHHHTGGGH
T ss_pred -HHHHHHHHHHHHhccceEEecCC----CceEEEecHHHHHHHHhhhhHHH
Confidence 46689999999999999976543 56689999999999999987763
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.8e-34 Score=302.76 Aligned_cols=288 Identities=21% Similarity=0.315 Sum_probs=210.1
Q ss_pred CCCCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccc-cccC-CceEEEEecCCCCHH
Q 037039 158 QPNVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRV-KEHF-ELKIWIRVFEDFGER 235 (505)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~ 235 (505)
.|..++.||||+.++++|.++|... ....++|+|+||||+||||||.+++++..+ ..+| +.++|++++.. +..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chH
Confidence 3455578999999999999999753 245789999999999999999999997666 7889 48999999875 444
Q ss_pred HHHHHHHHHHHHhhhh--ccccCCCCCchHHHHHHHHHcCC--ceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEe
Q 037039 236 QIMRKIMELIIEQIMT--NYVFQGDLNTHRLQQILRDCLNG--KRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVT 311 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 311 (505)
.++..+.. +...+.. ........+...+...+...+.+ +++||||||+|+. ..+ ..+ .+|++||||
T Consensus 194 ~~~~~l~~-l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l----~~l---~~~~~ilvT 263 (591)
T 1z6t_A 194 GLLMKLQN-LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL----KAF---DSQCQILLT 263 (591)
T ss_dssp HHHHHHHH-HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH----HTT---CSSCEEEEE
T ss_pred HHHHHHHH-HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH----HHh---cCCCeEEEE
Confidence 44444433 2222211 00011112333466777777765 7899999999862 222 222 578999999
Q ss_pred cCChHHHHhhccCCCCCceeC---CCCChhhhHHHHHHh--------------------------HHhhhhccCCCChHH
Q 037039 312 TRSRKVASIMGTRGGTTGYNL---QGLPFEDCLSLFMKF--------------------------RTLGSVLCGKTDKRD 362 (505)
Q Consensus 312 TR~~~va~~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~--------------------------~~ig~~L~~~~~~~~ 362 (505)
||+..++..+.. ..+.+ ++|+.+++++||... ..+|+.++.+. ..
T Consensus 264 sR~~~~~~~~~~----~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~ 337 (591)
T 1z6t_A 264 TRDKSVTDSVMG----PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (591)
T ss_dssp ESCGGGGTTCCS----CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TC
T ss_pred CCCcHHHHhcCC----CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hh
Confidence 999988765431 33443 689999999999865 55666666553 35
Q ss_pred HHHHHccccccc--------cccCCcchhHHHhhHhcccHHHHHHHHHhccCCCCCccchhhHHHHHHhccCcccCCCCC
Q 037039 363 WEFVRDNEIWQL--------EQMERGILPTLRLSYDQLSPHLKQCFAYCSIFPRDYQFYGDSLVQFWMAHGLLQSHNKKE 434 (505)
Q Consensus 363 w~~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~ 434 (505)
|...++...... ......+..+|.+||+.||++.|.||++||+||+|+.|+...+..+|.++
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----------
Confidence 776554332111 11123678899999999999999999999999999999999999999542
Q ss_pred CHHHHHHHHHHHHHHcCCccccccCCCCCceeEEEeChhHHHHHHHhh
Q 037039 435 ELEDIGMRYLKELLSRFFFQDLSFGMLGMETFSFKMHDLMHDLAQQVA 482 (505)
Q Consensus 435 ~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 482 (505)
.+.+..++++|+++|||+....+ ...+|+||+++|+|++...
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~~~----~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEEET----TEEEEECCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhCcCeEEecCC----CccEEEEcHHHHHHHHhhh
Confidence 24578899999999999965433 4668999999999999874
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.79 E-value=2.1e-20 Score=151.80 Aligned_cols=78 Identities=27% Similarity=0.476 Sum_probs=74.3
Q ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhh--hccCchHHHHHHHHHHHhhchhhhhhhhHhHHH
Q 037039 9 EKLLEKLGSSAYEELLLFCGVKNDLHKLKEKLTTVKSVVLDAEEK--QNHNRRLSDWLGKLKDACYDAEDVLDEFEVEDQ 86 (505)
Q Consensus 9 ~~l~~kl~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~ 86 (505)
+++++||++++.+|+.++.||++++++|+++|++|+++|.||+.+ +..++.++.|+++||+++||+|||||+|.++..
T Consensus 4 ~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999999999999999999999999999999987 568999999999999999999999999998764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.59 E-value=7.5e-15 Score=148.38 Aligned_cols=288 Identities=15% Similarity=0.080 Sum_probs=160.9
Q ss_pred CCCCcccccchhHHHHHHHH-hcCCCCCCCceeEEEE--EecCCChHHHHHHHHhcccccc---ccCC-ceEEEEecCCC
Q 037039 160 NVPPDIIGRDKDREKIIELL-MQTSDGKSETVSVVPI--VGIGGLGKTAVAQLVYNDQRVK---EHFE-LKIWIRVFEDF 232 (505)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~v~~~~ 232 (505)
..|..++||+.+++.|.++| .....+.......+.| +|++|+||||||+.+++..... ..|+ ..+|+.+....
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 44578999999999999988 4321100023345666 9999999999999999843211 0122 35677776777
Q ss_pred CHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC--CceEEEEEecCCCC------ChhhHHHHHHhhcCC--
Q 037039 233 GERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNE------DPEAWRNLKSLLLGG-- 302 (505)
Q Consensus 233 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~------~~~~~~~l~~~l~~~-- 302 (505)
+...++..++.++.... .....+..++...+...+. +++++|||||+|.. +.+.+..+...+...
T Consensus 99 ~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPI-----QVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp SHHHHHHHHHHHHTCCC-----CCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCC-----CCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 88888888888773210 1112223345556666654 67999999999752 224444444444321
Q ss_pred -C--CCcEEEEecCChHHHHhhc-------cCCCCCceeCCCCChhhhHHHHHHhHH---------------hhhhccC-
Q 037039 303 -A--NGSKILVTTRSRKVASIMG-------TRGGTTGYNLQGLPFEDCLSLFMKFRT---------------LGSVLCG- 356 (505)
Q Consensus 303 -~--~gs~iivTTR~~~va~~~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~---------------ig~~L~~- 356 (505)
. ....+|+||+...+...+. ..-. ..+.+.+|+.++++++|..... +......
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGED 252 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHh
Confidence 2 3455888887665432221 1111 2389999999999999965411 1111110
Q ss_pred C---CChHHHHHHHcccccc-ccccC-----Ccc---------hhHHHhhHhcccHHHHHHHHHhccCC--CCCccchhh
Q 037039 357 K---TDKRDWEFVRDNEIWQ-LEQME-----RGI---------LPTLRLSYDQLSPHLKQCFAYCSIFP--RDYQFYGDS 416 (505)
Q Consensus 357 ~---~~~~~w~~~~~~~~~~-~~~~~-----~~i---------~~~l~~sy~~L~~~~k~cfl~ls~fp--~~~~i~~~~ 416 (505)
. .++.....++...... ..... ..+ ...+.-++..||++.+.++..++.+. .+..+....
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~ 332 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGL 332 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 0 1121111111100000 00000 011 12233456789999999999898753 233455555
Q ss_pred HHHHHH--h-ccCcccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 037039 417 LVQFWM--A-HGLLQSHNKKEELEDIGMRYLKELLSRFFFQDLS 457 (505)
Q Consensus 417 Li~~Wi--a-eg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 457 (505)
+...+. + .-+ .. . .........++++|++.+||....
T Consensus 333 ~~~~~~~~~~~~~-~~-~--~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 333 LRQRYEDASLTMY-NV-K--PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHS-CC-C--CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhhc-CC-C--CCCHHHHHHHHHHHHhCCCEEeec
Confidence 555442 2 111 10 0 012345678999999999998754
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.47 E-value=1.2e-12 Score=128.86 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=153.8
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCC------CH
Q 037039 161 VPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDF------GE 234 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~------~~ 234 (505)
.+..|+||+.+++.|.+++.. + +++.|+|++|+|||||++++++.. . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 346799999999999998853 1 689999999999999999998732 1 6677665432 44
Q ss_pred HHHHHHHHHHHHHh--hh---------hccccC-CCCCchHHHHHHHHHcCC-ceEEEEEecCCCCC-------hhhHHH
Q 037039 235 RQIMRKIMELIIEQ--IM---------TNYVFQ-GDLNTHRLQQILRDCLNG-KRYLLVMDDVWNED-------PEAWRN 294 (505)
Q Consensus 235 ~~~~~~il~~l~~~--~~---------~~~~~~-~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~~~-------~~~~~~ 294 (505)
..++..+...+... .. .+.... ......++...+...... ++++|||||++..+ ...+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 45555554433110 00 000000 001122344555554442 38999999997532 233444
Q ss_pred HHHhhcCCCCCcEEEEecCChHHHHhh----cc----CCC-CCceeCCCCChhhhHHHHHHhHH-hh------------h
Q 037039 295 LKSLLLGGANGSKILVTTRSRKVASIM----GT----RGG-TTGYNLQGLPFEDCLSLFMKFRT-LG------------S 352 (505)
Q Consensus 295 l~~~l~~~~~gs~iivTTR~~~va~~~----~~----~~~-~~~~~l~~L~~~~~~~Lf~~~~~-ig------------~ 352 (505)
|...+... ++.++|+|++.......+ .. .+. ...+.+.+|+.+++.+++...-. .| .
T Consensus 155 L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 233 (350)
T 2qen_A 155 FAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44433322 467899998876542211 10 111 13689999999999999875310 00 0
Q ss_pred hccCCCChHHHHHHHcccc--cccc----ccCCcchhHHHhhHhcc---cHHHHHHHHHhccCCCCCccchhhHHHHHHh
Q 037039 353 VLCGKTDKRDWEFVRDNEI--WQLE----QMERGILPTLRLSYDQL---SPHLKQCFAYCSIFPRDYQFYGDSLVQFWMA 423 (505)
Q Consensus 353 ~L~~~~~~~~w~~~~~~~~--~~~~----~~~~~i~~~l~~sy~~L---~~~~k~cfl~ls~fp~~~~i~~~~Li~~Wia 423 (505)
...+. +.....+..... +... .....+...+.-.+..+ ++..+..+..+|. + ..+...+....-+
T Consensus 234 ~tgG~--P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~ 307 (350)
T 2qen_A 234 LLDGI--PGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAV 307 (350)
T ss_dssp HHTTC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHH
T ss_pred HhCCC--HHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHH
Confidence 00111 111111110000 0000 00001111222233444 7888999999988 2 1344455443322
Q ss_pred ccCcccCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCCceeEEE-eChhHHHHHH
Q 037039 424 HGLLQSHNKKEELEDIGMRYLKELLSRFFFQDLSFGMLGMETFSFK-MHDLMHDLAQ 479 (505)
Q Consensus 424 eg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~-mHdlv~~~a~ 479 (505)
. .- + ........+++.|++.+||.... | .|+ .|++++++.+
T Consensus 308 ~-~~----~--~~~~~~~~~l~~L~~~gli~~~~----~----~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 308 K-GT----K--IPEPRLYALLENLKKMNWIVEED----N----TYKIADPVVATVLR 349 (350)
T ss_dssp T-TC----C--CCHHHHHHHHHHHHHTTSEEEET----T----EEEESSHHHHHHHT
T ss_pred H-hC----C--CCHHHHHHHHHHHHhCCCEEecC----C----EEEEecHHHHHHHc
Confidence 1 10 1 12345778999999999998642 2 344 4888888764
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=6.2e-12 Score=124.15 Aligned_cols=279 Identities=11% Similarity=0.087 Sum_probs=150.6
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC-----CCHH
Q 037039 161 VPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED-----FGER 235 (505)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~ 235 (505)
.+..|+||+.+++.|.+ +. . +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 34679999999999999 63 2 589999999999999999998742 21 2578876642 3445
Q ss_pred HHHHHHHHHHHHhh---------hhc---cccC-----------CCCCchHHHHHHHHHcCCceEEEEEecCCCCC----
Q 037039 236 QIMRKIMELIIEQI---------MTN---YVFQ-----------GDLNTHRLQQILRDCLNGKRYLLVMDDVWNED---- 288 (505)
Q Consensus 236 ~~~~~il~~l~~~~---------~~~---~~~~-----------~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~---- 288 (505)
.++..+.+.+.... ... .... .......+...+.+... ++++|||||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 55555555442210 000 0000 00111224444444323 49999999996532
Q ss_pred hhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh----c----cCCC-CCceeCCCCChhhhHHHHHHhHH-hh-------
Q 037039 289 PEAWRNLKSLLLGGANGSKILVTTRSRKVASIM----G----TRGG-TTGYNLQGLPFEDCLSLFMKFRT-LG------- 351 (505)
Q Consensus 289 ~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~----~----~~~~-~~~~~l~~L~~~~~~~Lf~~~~~-ig------- 351 (505)
...+..+...+.. .++.++|+|++.......+ . ..+. ...+.+.+|+.+++.+++..... .|
T Consensus 155 ~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~ 233 (357)
T 2fna_A 155 VNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYE 233 (357)
T ss_dssp CCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHH
T ss_pred hhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 2233334333322 2467899999987542221 1 1111 14689999999999999975310 01
Q ss_pred ---hhccCCCChHHHHHHHccc-----ccc-ccccCCcchhHHHhhHh-------cccHHHHHHHHHhccCCCCCccchh
Q 037039 352 ---SVLCGKTDKRDWEFVRDNE-----IWQ-LEQMERGILPTLRLSYD-------QLSPHLKQCFAYCSIFPRDYQFYGD 415 (505)
Q Consensus 352 ---~~L~~~~~~~~w~~~~~~~-----~~~-~~~~~~~i~~~l~~sy~-------~L~~~~k~cfl~ls~fp~~~~i~~~ 415 (505)
....+. +.....+.... .+. +....+.+...+.-.+. .||+..+..+..+|+ +. +..
T Consensus 234 ~i~~~t~G~--P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~ 306 (357)
T 2fna_A 234 VVYEKIGGI--PGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWS 306 (357)
T ss_dssp HHHHHHCSC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHH
T ss_pred HHHHHhCCC--HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHH
Confidence 001111 11111111000 000 00000011111211112 688999999999998 21 334
Q ss_pred hHHHHHH-hccCcccCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCCceeEEE-eChhHHHHH
Q 037039 416 SLVQFWM-AHGLLQSHNKKEELEDIGMRYLKELLSRFFFQDLSFGMLGMETFSFK-MHDLMHDLA 478 (505)
Q Consensus 416 ~Li~~Wi-aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~-mHdlv~~~a 478 (505)
.+....- ..|. .........+++.|++.+||.... + .|+ .|++++++.
T Consensus 307 ~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~----~----~y~f~~~~~~~~l 356 (357)
T 2fna_A 307 DVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG----E----KYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS----S----CEEESSHHHHHHT
T ss_pred HHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC----C----EEEecCHHHHHhh
Confidence 4432110 1121 011244678999999999998642 2 355 588998874
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=1e-11 Score=124.23 Aligned_cols=312 Identities=13% Similarity=0.108 Sum_probs=177.4
Q ss_pred CCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEecCCCCHHHHH
Q 037039 160 NVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF-ELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~ 238 (505)
+.|..++||+.+++.+..++.....+.....+.+.|+|++|+|||||++.+++. ..... ...+|++.+...+...++
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 91 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAII 91 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHH
Confidence 344789999999999999886521111223348999999999999999999873 22221 245677777777777888
Q ss_pred HHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC--CceEEEEEecCCCCChhhHHHHHHhhcCCC----CCcEEEEec
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNEDPEAWRNLKSLLLGGA----NGSKILVTT 312 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTT 312 (505)
..++..+... .........++...+...+. +++.+||||+++..+......|...+.... .+..+|+||
T Consensus 92 ~~l~~~l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 92 GEIARSLNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp HHHHHHTTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred HHHHHHhCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 7777766221 01112233345555555543 668999999998766667777766664422 466788888
Q ss_pred CChHHHHhhcc----CCCCCceeCCCCChhhhHHHHHHhHH---------------hhhhccC-------CCChHHHHHH
Q 037039 313 RSRKVASIMGT----RGGTTGYNLQGLPFEDCLSLFMKFRT---------------LGSVLCG-------KTDKRDWEFV 366 (505)
Q Consensus 313 R~~~va~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~---------------ig~~L~~-------~~~~~~w~~~ 366 (505)
+.......+.. .-....+.+.+++.++..+++..... +...... ..+......+
T Consensus 167 ~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 167 HNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred CCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 76643322210 00113689999999999998876511 1111100 0112111111
Q ss_pred Hcccccccc-ccC-----Ccchh--------HHHhhHhcccHHHHHHHHHhccCC---CCCccchhhHHHHHHh----cc
Q 037039 367 RDNEIWQLE-QME-----RGILP--------TLRLSYDQLSPHLKQCFAYCSIFP---RDYQFYGDSLVQFWMA----HG 425 (505)
Q Consensus 367 ~~~~~~~~~-~~~-----~~i~~--------~l~~sy~~L~~~~k~cfl~ls~fp---~~~~i~~~~Li~~Wia----eg 425 (505)
+........ ... ..+.. .+.-.+..||++.+.++..++.+. .+-.+....+...+-. .|
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG 326 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC
Confidence 111000000 000 01111 223347788999888888887654 2224666666665532 22
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCcccccc----CCCCCceeEEE----eChhHHHHHHHhhhcc
Q 037039 426 LLQSHNKKEELEDIGMRYLKELLSRFFFQDLSF----GMLGMETFSFK----MHDLMHDLAQQVAKDE 485 (505)
Q Consensus 426 ~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~----~~~~~~~~~~~----mHdlv~~~a~~~~~~e 485 (505)
.. + .......+++++|...+++..... +..| +...++ .|+++..+...+..+|
T Consensus 327 ~~-~-----~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g-~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 327 ER-P-----RVHSQLWSYLNDLREKGIVETRQNKRGEGVRG-RTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CC-C-----CCHHHHHHHHHHHHHTTSSEEEEC----------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CC-C-----CCHHHHHHHHHHHHhCCCeEEeeeccCCCCCC-ceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11 1 123457789999999999987654 2122 222333 4466666666555443
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=5e-11 Score=119.04 Aligned_cols=283 Identities=14% Similarity=0.059 Sum_probs=158.0
Q ss_pred CCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccccc------CCceEEEEecCCCC
Q 037039 160 NVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH------FELKIWIRVFEDFG 233 (505)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~v~~~~~ 233 (505)
..|..++||+.+++.+..++..... ....+.+.|+|++|+||||||+.+++. .... --..+|++.....+
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCC
Confidence 4457899999999999998854311 234567889999999999999999973 2221 12356777777778
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHc--CCceEEEEEecCCCCChh--hHHHHHHhh---cCC--CC
Q 037039 234 ERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCL--NGKRYLLVMDDVWNEDPE--AWRNLKSLL---LGG--AN 304 (505)
Q Consensus 234 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~~~--~~~~l~~~l---~~~--~~ 304 (505)
...++..++..+.... ........++...+...+ .+++.+||||+++..... ..+.+...+ ... ..
T Consensus 92 ~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~ 166 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRV-----PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRV 166 (387)
T ss_dssp HHHHHHHHHHHHSCCC-----CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCc
Confidence 8888888888773210 111222334555666666 356899999999643221 222333222 221 34
Q ss_pred CcEEEEecCChHH----HHhhccCCCCCceeCCCCChhhhHHHHHHhHHh---------------hhhccC-CCChHHHH
Q 037039 305 GSKILVTTRSRKV----ASIMGTRGGTTGYNLQGLPFEDCLSLFMKFRTL---------------GSVLCG-KTDKRDWE 364 (505)
Q Consensus 305 gs~iivTTR~~~v----a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~i---------------g~~L~~-~~~~~~w~ 364 (505)
+..+|.||+.... ...+...-....+.+.+++.++...++.....- ...-.. ..++..-.
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHH
T ss_pred eEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHH
Confidence 5677777776522 111111111146899999999999999865211 111100 00111111
Q ss_pred HHHccccccccc-cC-----Ccch--------hHHHhhHhcccHHHHHHHHHhc-cCCCCCccchhhHHHHHHh----cc
Q 037039 365 FVRDNEIWQLEQ-ME-----RGIL--------PTLRLSYDQLSPHLKQCFAYCS-IFPRDYQFYGDSLVQFWMA----HG 425 (505)
Q Consensus 365 ~~~~~~~~~~~~-~~-----~~i~--------~~l~~sy~~L~~~~k~cfl~ls-~fp~~~~i~~~~Li~~Wia----eg 425 (505)
.++......... .. ..+. ..+.-++..||++.+..++.++ ++...-.+....+.+.... .|
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 111110000000 00 0111 2234456889998888777666 4432234555544443321 22
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 037039 426 LLQSHNKKEELEDIGMRYLKELLSRFFFQDLS 457 (505)
Q Consensus 426 ~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 457 (505)
+. ......+.++++.|...|++....
T Consensus 327 -~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 327 -LE-----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp -CC-----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -CC-----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 11 123456789999999999998754
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=3.2e-11 Score=120.46 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=114.1
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccccc----cc--CCceEEEEecCCC-CH
Q 037039 162 PPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVK----EH--FELKIWIRVFEDF-GE 234 (505)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~ 234 (505)
|..++||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|++..... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 37799999999999988864211 2335689999999999999999999832111 11 2345677776666 77
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhh-HHHHHHhhcCCCCCcEEEEecC
Q 037039 235 RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEA-WRNLKSLLLGGANGSKILVTTR 313 (505)
Q Consensus 235 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~-~~~l~~~l~~~~~gs~iivTTR 313 (505)
..++..++..+... ..........++...+...+..++.+|||||++...... .+.+...+.....+..+|+||+
T Consensus 97 ~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~ 172 (384)
T 2qby_B 97 QAVLSSLAGKLTGF----SVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHCS----CCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECS
T ss_pred HHHHHHHHHHhcCC----CCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEEC
Confidence 78888887776321 001112233456677777777766699999996432111 1220222222226778888888
Q ss_pred ChHH----HHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 314 SRKV----ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 314 ~~~v----a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.... ...+...-. ..+.+.+++.++..++|...
T Consensus 173 ~~~~~~~l~~~l~sr~~-~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLG-PSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp STTTTTTSCHHHHHTCC-CEEEECCCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEECCCCHHHHHHHHHHH
Confidence 6532 111111111 37999999999999999864
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=5.2e-11 Score=118.78 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=110.8
Q ss_pred CCCCcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEecCCCCHHH
Q 037039 160 NVPPDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF---ELKIWIRVFEDFGERQ 236 (505)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 236 (505)
..|..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++ .....+ ...+|+......+...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHH
Confidence 4457899999999999998864211 13356888999999999999999998 333332 2456777666556666
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcC--CceEEEEEecCCCC----ChhhHHHHHHhhcC-CCCCcEEE
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLN--GKRYLLVMDDVWNE----DPEAWRNLKSLLLG-GANGSKIL 309 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~----~~~~~~~l~~~l~~-~~~gs~ii 309 (505)
++..++..+.. .. .....+..++...+...+. +++.+||||+++.. +...+..+...+.. ...+..+|
T Consensus 93 ~~~~i~~~l~~----~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I 167 (386)
T 2qby_A 93 VLADLLESLDV----KV-PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFI 167 (386)
T ss_dssp HHHHHTTTTSC----CC-CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEE
T ss_pred HHHHHHHHhCC----CC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEE
Confidence 66666554411 00 0111223334455555543 45899999999642 13445555555532 23355678
Q ss_pred EecCChHHHHhh----ccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 310 VTTRSRKVASIM----GTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 vTTR~~~va~~~----~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+||+.......+ ...-....+.+.+++.++..+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 168 GITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp EEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred EEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 888765432211 11111146999999999999999864
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.08 E-value=3.1e-10 Score=105.26 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=98.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++||+..++.+..++... ...+.+.|+|++|+||||||+.+++.......+.. ..+.......
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~--- 87 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCR--- 87 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS-------SCCSCSHHHH---
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHH---
Confidence 57999999999999999753 22357889999999999999999874321111100 0000000000
Q ss_pred HHHHHhhhhcc-c-cCCCCCchHHHHHHHHHc-----CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 243 ELIIEQIMTNY-V-FQGDLNTHRLQQILRDCL-----NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 243 ~~l~~~~~~~~-~-~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
.+........ . ........+....+...+ .+++.+||+||++..+...+..+...+.....+..+|+||+..
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 88 -EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp -HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred -HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 0100000000 0 000001111112222222 3568999999998777778888888887766778888888765
Q ss_pred H-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 316 K-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 316 ~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
. +...+.. ....+.+.+++.++..+++...
T Consensus 167 ~~~~~~l~~--r~~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 167 QKLPVTILS--RCLQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp GGSCHHHHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred HhCCHHHHH--HhhhccCCCCCHHHHHHHHHHH
Confidence 3 2211111 1257899999999999998754
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.2e-09 Score=99.70 Aligned_cols=155 Identities=12% Similarity=0.165 Sum_probs=98.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
..++|++..++.+.+++... ..+.+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+ ...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVV-RHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHH-HHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHH-HHH
Confidence 67999999999999999753 223488999999999999999987321 11222 2233333333332221 121
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHH-HHh
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKV-ASI 320 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-a~~ 320 (505)
+..+.. .. ....+++.+||+||++.......+.+...+.....++++|+||+.... ...
T Consensus 89 ~~~~~~--------~~------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 89 IKEFAR--------TA------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp HHHHHT--------SC------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHhc--------cc------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 221110 00 011357899999999877666777777777666667888888876531 111
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+.. ....+.+.+++.++...++...
T Consensus 149 l~~--r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 149 IQS--RCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp HHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred HHH--hCceeecCCCCHHHHHHHHHHH
Confidence 111 1246899999999998888753
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=2.9e-09 Score=103.59 Aligned_cols=150 Identities=17% Similarity=0.130 Sum_probs=87.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|++..++.+..++...... ......+.|+|++|+|||+||+.+++. ... ..++++.+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChH-------
Confidence 67999999999988887532100 122356789999999999999999873 221 12333322211111
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC------------------C
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA------------------N 304 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~ 304 (505)
++...+...+ .+..+|+||++..........+...+.... +
T Consensus 79 --------------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 79 --------------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp --------------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred --------------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1111111111 345689999997766556666665554321 2
Q ss_pred CcEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 305 GSKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 305 gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+..+|.||.... +...+... -...+.+.+++.++...++...
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R-~~~~i~l~~~~~~e~~~~l~~~ 180 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSR-FGIVEHLEYYTPEELAQGVMRD 180 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTT-CSCEEECCCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhc-ccEEEecCCCCHHHHHHHHHHH
Confidence 345666665432 21111111 0146899999999988887654
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1.2e-08 Score=99.03 Aligned_cols=155 Identities=15% Similarity=0.259 Sum_probs=99.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
..++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..+++..+..... ..+.++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHH
Confidence 67999999999999998743 223388999999999999999987321 11121 2334443332222 222222
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHc-CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHH
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCL-NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VAS 319 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~ 319 (505)
+..+... ...+ .+++.+||+||++......++.|...+.....++.+|+||.... +..
T Consensus 93 ~~~~~~~--------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~ 152 (323)
T 1sxj_B 93 IKHFAQK--------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIE 152 (323)
T ss_dssp HHHHHHB--------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred HHHHHhc--------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchh
Confidence 2222100 0012 35689999999987666677777777766666788888886642 222
Q ss_pred hhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 320 IMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+.. ....+.+.+++.++...++...
T Consensus 153 ~l~s--r~~~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 153 PLQS--QCAILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp HHHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred HHHh--hceEEeecCCCHHHHHHHHHHH
Confidence 2222 1257899999999999988764
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=5.2e-08 Score=94.62 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=95.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..+.+..+..... ..+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHH
Confidence 67999999999999988753 233488999999999999999987321 11111 1233332211000 111111
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHh
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VASI 320 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~ 320 (505)
+..+.. . .....+++.++|+|+++......++.|...+.....++++|+||.... +...
T Consensus 97 ~~~~~~--------~------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 156 (327)
T 1iqp_A 97 VKEFAR--------T------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP 156 (327)
T ss_dssp HHHHHH--------S------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHh--------h------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHH
Confidence 111100 0 001125688999999987777777888888776667788888887643 1111
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+... ...+.+.+++.++...++...
T Consensus 157 l~sr--~~~~~~~~l~~~~~~~~l~~~ 181 (327)
T 1iqp_A 157 IQSR--CAIFRFRPLRDEDIAKRLRYI 181 (327)
T ss_dssp HHHT--EEEEECCCCCHHHHHHHHHHH
T ss_pred HHhh--CcEEEecCCCHHHHHHHHHHH
Confidence 1111 146889999999988887653
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.65 E-value=3.4e-08 Score=87.69 Aligned_cols=45 Identities=29% Similarity=0.484 Sum_probs=38.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999998642 2356789999999999999999873
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=9.2e-08 Score=91.57 Aligned_cols=173 Identities=12% Similarity=0.052 Sum_probs=100.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccc---cCC--ceEEEEecCCCCHHHHH
Q 037039 164 DIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE---HFE--LKIWIRVFEDFGERQIM 238 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~v~~~~~~~~~~ 238 (505)
.+.||+++++.|...|...-. ....+.+.|+|++|+|||++++.|++...... ... ..++++.....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 489999999999988865321 24567889999999999999999998432111 111 24566666777888888
Q ss_pred HHHHHHHHHhhhhccccCCCCCchH-HHHHHHHH--cCCceEEEEEecCCCCChhhHHHHHHhhc----CCCCCcEEEEe
Q 037039 239 RKIMELIIEQIMTNYVFQGDLNTHR-LQQILRDC--LNGKRYLLVMDDVWNEDPEAWRNLKSLLL----GGANGSKILVT 311 (505)
Q Consensus 239 ~~il~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~--L~~kr~LlVlDdvw~~~~~~~~~l~~~l~----~~~~gs~iivT 311 (505)
..|.+++... ........+ +...+... -.+++++++||++.... .-+.|...+. ...+.+ ||.+
T Consensus 99 ~~I~~~L~g~------~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~-vI~i 169 (318)
T 3te6_A 99 EKIWFAISKE------NLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLS-IICV 169 (318)
T ss_dssp HHHHHHHSCC------C--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEE-EEEE
T ss_pred HHHHHHhcCC------CCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEE-EEEE
Confidence 8998888321 000111223 33333322 24678999999997542 1122332221 122222 3333
Q ss_pred cCChH-----HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 312 TRSRK-----VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 312 TR~~~-----va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+...+ +...+...-....+.+.+++.++-.+++...
T Consensus 170 ~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~R 210 (318)
T 3te6_A 170 GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITR 210 (318)
T ss_dssp CCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred ecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHH
Confidence 33221 1111111111145889999999999988875
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=1.2e-06 Score=86.62 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=96.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|++..++.+.+.+... .....+.|+|++|+||||+|+.+.+.......+. ...+........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 56999999999999998653 2234778999999999999999986322111110 00111111111110
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-H
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDC----LNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-V 317 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v 317 (505)
..-..... ...........+....+... ..+++.+||+||+...+....+.|...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 84 QGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp TSCCSSCE-EEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred ccCCCceE-EecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000000 00000000111122222221 135678999999987777778888888876666677777776442 2
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+.. ....+.+.+++.++...++...
T Consensus 163 ~~~l~s--r~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 163 PVTILS--RCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp CHHHHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred cHHHHh--heeEeeCCCCCHHHHHHHHHHH
Confidence 222221 2257899999999988888754
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.41 E-value=9.3e-07 Score=85.35 Aligned_cols=152 Identities=13% Similarity=0.186 Sum_probs=93.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~----- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV----- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----
Confidence 67999999999998887642 223388999999999999999987311 11111 122333322111000
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHH--c-CCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-H
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDC--L-NGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-V 317 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v 317 (505)
..+....+... + .+++.++|+|++........+.|...+.....++.+|+||.... +
T Consensus 85 -------------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 85 -------------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (319)
T ss_dssp -------------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGS
T ss_pred -------------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 01111111111 1 25688999999977666667777777776666788888876543 2
Q ss_pred HHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 318 ASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 318 a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+... ...+.+.+++.++...++...
T Consensus 146 ~~~l~sr--~~~i~~~~~~~~~~~~~l~~~ 173 (319)
T 2chq_A 146 IEPIQSR--CAVFRFKPVPKEAMKKRLLEI 173 (319)
T ss_dssp CHHHHTT--CEEEECCCCCHHHHHHHHHHH
T ss_pred chHHHhh--CeEEEecCCCHHHHHHHHHHH
Confidence 2222221 257899999999888877653
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.40 E-value=1.4e-06 Score=87.88 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=85.1
Q ss_pred CcccccchhH---HHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDR---EKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..+ ..+...+... ....+.|+|++|+||||||+.+.+. .... ++.++........+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHH
Confidence 6799998887 6777777643 3467889999999999999999873 2222 233332222222222
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEE-EecCChH--
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKIL-VTTRSRK-- 316 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~-- 316 (505)
.++.... .....+++.+|+||++........+.|...+..+. ..+| .||.+..
T Consensus 93 ~~~~~a~----------------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~--v~lI~att~n~~~~ 148 (447)
T 3pvs_A 93 EAIERAR----------------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--ITFIGATTENPSFE 148 (447)
T ss_dssp HHHHHHH----------------------HHHHTTCCEEEEEETTTCC------CCHHHHHTTS--CEEEEEESSCGGGS
T ss_pred HHHHHHH----------------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc--eEEEecCCCCcccc
Confidence 2222210 11124678899999998766555666666666522 2333 3555542
Q ss_pred HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 317 VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 317 va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+...+.. ....+.+.+++.++...++...
T Consensus 149 l~~aL~s--R~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 149 LNSALLS--RARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp SCHHHHT--TEEEEECCCCCHHHHHHHHHHH
T ss_pred cCHHHhC--ceeEEeeCCcCHHHHHHHHHHH
Confidence 1111111 1256889999999988887654
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=7.3e-06 Score=79.87 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=89.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+. ....| +.++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 6799999999999988864310 0133456789999999999999999773 22222 2222211110
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC------------------C
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA------------------N 304 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~ 304 (505)
.......+.. ..+..+|+||++..........|...+.... +
T Consensus 94 ------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 94 ------------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ------------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ------------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 0111111211 2356789999998766666666766665432 1
Q ss_pred CcEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 305 GSKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 305 gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+..+|.||.... +...+... -...+.+.+++.++...++...
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R-~~~~i~l~~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDR-FGMQFRLEFYKDSELALILQKA 196 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTT-CSEEEECCCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhh-cCEEeeCCCcCHHHHHHHHHHH
Confidence 245665555432 21111111 1156899999999998888764
No 24
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.35 E-value=5.5e-07 Score=79.40 Aligned_cols=45 Identities=29% Similarity=0.435 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999998642 2345689999999999999999873
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=2.2e-06 Score=81.43 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=84.8
Q ss_pred CcccccchhHHHHHHHHhcCCCC-------CCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG-------KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.+++|.+..++.|.+.+...... +-.....+.|+|++|+|||+||+.+++. ....| +.+..+.-....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~~~ 91 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVKKF 91 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCCS
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHHhc
Confidence 67999999999998877432000 0123456889999999999999999873 22211 222221111000
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC-----------ChhhHHHHHHh---hc-
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE-----------DPEAWRNLKSL---LL- 300 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~---l~- 300 (505)
.......+...+......++.+|+||++... +......+... +.
T Consensus 92 ---------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 92 ---------------------IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred ---------------------cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 0000011222233333456789999999531 11112223222 22
Q ss_pred -CCCCCcEEEEecCChHHHH-hhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 301 -GGANGSKILVTTRSRKVAS-IMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 301 -~~~~gs~iivTTR~~~va~-~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
....+..||.||....... .....+. ...+.+...+.++..++|...
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH
Confidence 2234567777876543211 1111011 135889999999988888653
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.31 E-value=1.4e-06 Score=87.99 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=79.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE--LKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
...+.|+|++|+||||||+.+++ .....|+ ..++++. ..+..++...+.. . . ...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~---------~---~---~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKE---------G---K---LNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHT---------T---C---HHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHc---------c---c---HHH
Confidence 56788999999999999999998 4444442 2344432 2334444444311 0 0 122
Q ss_pred HHHHcCCceEEEEEecCCCCCh--hhHHHHHHhhcC-CCCCcEEEEecCCh---------HHHHhhccCCCCCceeCCCC
Q 037039 268 LRDCLNGKRYLLVMDDVWNEDP--EAWRNLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGYNLQGL 335 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~~---------~va~~~~~~~~~~~~~l~~L 335 (505)
+...+..+.-+|+|||++.... ...+.+...+.. ...|..||+||.+. .+...+... ..+.+.++
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g---~~i~l~~p 263 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEPP 263 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS---BCCBCCCC
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC---eEEEeCCC
Confidence 3344444677999999964322 233344444432 23467888888762 233333322 56889999
Q ss_pred ChhhhHHHHHHh
Q 037039 336 PFEDCLSLFMKF 347 (505)
Q Consensus 336 ~~~~~~~Lf~~~ 347 (505)
+.++-..++...
T Consensus 264 ~~e~r~~iL~~~ 275 (440)
T 2z4s_A 264 DEETRKSIARKM 275 (440)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999988888764
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=7.6e-06 Score=76.49 Aligned_cols=159 Identities=13% Similarity=0.174 Sum_probs=80.8
Q ss_pred CcccccchhHHHHHHHHhc---CCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELLMQ---TSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.+++|.+..++.+.+++.. ... .+-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~~- 79 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEVI- 79 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhhc-
Confidence 6789999888888665432 110 00123456789999999999999999873 2222 2233332211100
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC------------Ch---hhHHHHHHhhcC
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE------------DP---EAWRNLKSLLLG 301 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~------------~~---~~~~~l~~~l~~ 301 (505)
.......+...+.......+.+|+||++... .. .....+...+..
T Consensus 80 --------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 80 --------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred --------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 0000011222233333345789999999643 11 122233333332
Q ss_pred --CCCCcEEEEecCChHHH-HhhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 302 --GANGSKILVTTRSRKVA-SIMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va-~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+..||.||...... ..+...+. ...+.+...+.++-.+++...
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 22345666666554321 11111011 145678888888888777653
No 28
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.29 E-value=1.5e-06 Score=73.54 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=70.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 037039 164 DIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIME 243 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 243 (505)
.++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++.... ...+. + +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc---------
Confidence 57899999999998886432 12234679999999999999999873211 11122 2 444332211
Q ss_pred HHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 244 LIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
......+... ..-.|+||++..........|...+.......++|.||...
T Consensus 66 ------------------~~~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ------------------PQLNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ------------------SCHHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ------------------hhhhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0011111111 22478999998777667777777775555566787777643
No 29
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.27 E-value=2.1e-06 Score=79.06 Aligned_cols=143 Identities=14% Similarity=0.076 Sum_probs=78.8
Q ss_pred Ccccccc---hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRD---KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
.+|+|.+ ..++.+..++.. ...+.+.|+|++|+||||||+.+++. .......+.|+..+...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 5677633 445555555542 23467889999999999999999873 3222334556654331100
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhh--HHHHHHhhcCC-CCC-cEEEEecCCh
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEA--WRNLKSLLLGG-ANG-SKILVTTRSR 315 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iivTTR~~ 315 (505)
+ .+ .+ ..+ .++.+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 -----~----------------~~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 95 -----S----------------TA---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp -----C----------------GG---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred -----H----------------HH---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 0 00 00 011 346799999997543222 33344443221 122 2477777632
Q ss_pred ---------HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 316 ---------KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 316 ---------~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.+...+... ..+.+.+++.++..+++...
T Consensus 149 ~~~~~~~~~~l~~r~~~~---~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWG---LTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp TTTTTCCCHHHHHHHHHS---EEEECCCCCGGGHHHHHHHH
T ss_pred HHHHHHhhhhhhhHhhcC---ceEEeCCCCHHHHHHHHHHH
Confidence 222222211 56889999999988888754
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.26 E-value=4.3e-06 Score=81.01 Aligned_cols=149 Identities=16% Similarity=0.234 Sum_probs=92.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
.+++|.+..++.+.+++... ....++.+.|++|+|||++|+.+.+. .. ...+.++.+. .. ...+.+.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHHHH
Confidence 67999999999999999743 33467788899999999999999873 21 1223444332 22 22222222
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC-hhhHHHHHHhhcCCCCCcEEEEecCChH-HHHh
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED-PEAWRNLKSLLLGGANGSKILVTTRSRK-VASI 320 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~ 320 (505)
...... ....+++.+|++|++.... ....+.|...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~---------------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 94 TNFASA---------------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp HHHHHB---------------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred HHHHhh---------------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHH
Confidence 222110 0012478899999997665 5566667666655445677888876543 1111
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHH
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+... ...+.+.+++.++-.+++..
T Consensus 153 l~sR--~~~i~~~~~~~~e~~~il~~ 176 (324)
T 3u61_B 153 LQSR--CRVITFGQPTDEDKIEMMKQ 176 (324)
T ss_dssp HHHH--SEEEECCCCCHHHHHHHHHH
T ss_pred HHhh--CcEEEeCCCCHHHHHHHHHH
Confidence 1111 14688999998886555443
No 31
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.25 E-value=2.7e-06 Score=74.84 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=63.2
Q ss_pred chhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHh
Q 037039 169 DKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQ 248 (505)
Q Consensus 169 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~ 248 (505)
...++.+.+++.... ......+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 20 ~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~- 88 (180)
T 3ec2_A 20 NRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE- 88 (180)
T ss_dssp HHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC-
Confidence 344445555554322 2334688999999999999999998732211222 22333 233444444333311
Q ss_pred hhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhH--HHHHHhhcCC-CCCcEEEEecCCh
Q 037039 249 IMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAW--RNLKSLLLGG-ANGSKILVTTRSR 315 (505)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTTR~~ 315 (505)
.... .....+. +.-+|||||++......| ..+...+... ..|..+|+||...
T Consensus 89 --------~~~~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 --------GKDT--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --------TCCS--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --------chHH--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 2222222 456899999974322233 2344434321 2467788888643
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=8.5e-06 Score=79.80 Aligned_cols=166 Identities=9% Similarity=0.122 Sum_probs=95.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
..++|++..++.+..++.... .+.+.|+|++|+||||+|+.+.+.......+. ....+..+..... ..+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHH
Confidence 679999999999999986431 22388999999999999999987421111122 2233333332222 222232
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHh
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VASI 320 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~ 320 (505)
+..+.... ....... .....-.+++-+|++|++..........|...+.......++|++|.... +...
T Consensus 110 ~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 110 VKNFARLT-----VSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp HHHHHHSC-----CCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHhhhc-----ccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcch
Confidence 32221100 0000000 00111124567999999976666666777777766555677777765432 2222
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+... ...+.+.+++.++....+...
T Consensus 180 l~sR--~~~i~~~~~~~~~~~~~l~~~ 204 (353)
T 1sxj_D 180 LASQ--CSKFRFKALDASNAIDRLRFI 204 (353)
T ss_dssp HHHH--SEEEECCCCCHHHHHHHHHHH
T ss_pred hhcc--CceEEeCCCCHHHHHHHHHHH
Confidence 2111 146889999999888777653
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.22 E-value=6.3e-06 Score=79.18 Aligned_cols=161 Identities=13% Similarity=0.139 Sum_probs=89.0
Q ss_pred cccccchhHHHHHHHHhcCC---------CCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCH
Q 037039 164 DIIGRDKDREKIIELLMQTS---------DGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGE 234 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 234 (505)
.++|.+..++.|.+.+.... -........+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58898888888876654210 000133456889999999999999988773221111111123333210
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC---------ChhhHHHHHHhhcCCCCC
Q 037039 235 RQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE---------DPEAWRNLKSLLLGGANG 305 (505)
Q Consensus 235 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~g 305 (505)
.+ .. ...+.....+...+... +..+|+||++... .......|...+.....+
T Consensus 109 -~l----~~-----------~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 -DL----VG-----------QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp -GT----CC-----------SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred -Hh----hh-----------hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00 00 00000011122223222 3459999999732 455666777777766667
Q ss_pred cEEEEecCChHHHHhh------ccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 306 SKILVTTRSRKVASIM------GTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 306 s~iivTTR~~~va~~~------~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+|.||......... ... -...+.+.+++.++-..++...
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R-~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR-IAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH-EEEEEEECCCCHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh-CCeEEEcCCcCHHHHHHHHHHH
Confidence 7888888654321111 000 0146889999999988888654
No 34
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=9.6e-06 Score=79.52 Aligned_cols=165 Identities=7% Similarity=0.090 Sum_probs=89.1
Q ss_pred CcccccchhHHHHHHHH-hcCCCCCCCceeEEEEEecCCChHHHHHHHHhccc---cccc-cCCc---------------
Q 037039 163 PDIIGRDKDREKIIELL-MQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQ---RVKE-HFEL--------------- 222 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-~F~~--------------- 222 (505)
.+++|.+..++.+.+++ ... .... +.|+|++|+||||+|+.+.+.. .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 67899999888888877 322 2223 8899999999999999887621 1000 0110
Q ss_pred -----eEEEEecCC-CCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHH
Q 037039 223 -----KIWIRVFED-FGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLK 296 (505)
Q Consensus 223 -----~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~ 296 (505)
.+.+..+.. ........+++..+... .... ... .+. .+.+++-++|||++...+....+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~--~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~ 155 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQM--------EQVD--FQD-SKD-GLAHRYKCVIINEANSLTKDAQAALR 155 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTT--------TC----------------CCEEEEEECTTSSCHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHh--------cccc--ccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHH
Confidence 111111110 00000122222222100 0000 000 000 02346779999999877777777787
Q ss_pred HhhcCCCCCcEEEEecCCh-HHHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 297 SLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 297 ~~l~~~~~gs~iivTTR~~-~va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+.....++.+|++|... .+...+.. ....+.+.+++.++....+...
T Consensus 156 ~~le~~~~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 156 RTMEKYSKNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp HHHHHSTTTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHH
Confidence 7776555567788777653 22222222 2256899999999988877653
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.17 E-value=9.6e-06 Score=76.39 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred CcccccchhHHHHHH-------HHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIE-------LLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
..++|....++.+.. .+.... ......+.|+|++|+|||+||+.+++. .. ++. +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~~~--- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPDKM--- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGGGC---
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHHHh---
Confidence 457888777776666 232211 245678889999999999999999873 21 111 222222110
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCC--chHHHHHHHHHcCCceEEEEEecCCCC----------ChhhHHHHHHhhcC--
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLN--THRLQQILRDCLNGKRYLLVMDDVWNE----------DPEAWRNLKSLLLG-- 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~--~~~l~~~l~~~L~~kr~LlVlDdvw~~----------~~~~~~~l~~~l~~-- 301 (505)
...... ...+...+......+..+|+||++... .....+.|...+..
T Consensus 102 -------------------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~ 162 (272)
T 1d2n_A 102 -------------------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP 162 (272)
T ss_dssp -------------------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC
T ss_pred -------------------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc
Confidence 000000 011222333344567899999998431 11222334443332
Q ss_pred -CCCCcEEEEecCChHHHHhhccCCC-CCceeCCCCCh-hhhHHHHH
Q 037039 302 -GANGSKILVTTRSRKVASIMGTRGG-TTGYNLQGLPF-EDCLSLFM 345 (505)
Q Consensus 302 -~~~gs~iivTTR~~~va~~~~~~~~-~~~~~l~~L~~-~~~~~Lf~ 345 (505)
......||.||........+...+. ...+.+.+++. ++-..++.
T Consensus 163 ~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 163 PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp STTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH
T ss_pred CCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHH
Confidence 2223446677777654433211111 24578888887 54444443
No 36
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=1.5e-05 Score=77.07 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=72.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
....+.|+|++|+||||||+.+++. ....-...++++. ..+...+...+.. ... ..+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~------------~~~---~~~ 92 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKK------------GTI---NEF 92 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHH------------TCH---HHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHc------------CcH---HHH
Confidence 3456889999999999999999873 2211112344432 3334444443311 001 111
Q ss_pred HHHcCCceEEEEEecCCCCCh--hhHHHHHHhhcC-CCCCcEEEEecCCh---------HHHHhhccCCCCCceeCCCCC
Q 037039 269 RDCLNGKRYLLVMDDVWNEDP--EAWRNLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGYNLQGLP 336 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~~---------~va~~~~~~~~~~~~~l~~L~ 336 (505)
...+. +.-+|+|||+..... ...+.+...+.. ...|..||+||.+. .+...+... ..+.+.+ +
T Consensus 93 ~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~---~~i~l~~-~ 167 (324)
T 1l8q_A 93 RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG---ILVEIEL-D 167 (324)
T ss_dssp HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS---EEEECCC-C
T ss_pred HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc---eEEEeCC-C
Confidence 22222 367999999964322 223334444322 12356788887643 222222222 4588999 9
Q ss_pred hhhhHHHHHHh
Q 037039 337 FEDCLSLFMKF 347 (505)
Q Consensus 337 ~~~~~~Lf~~~ 347 (505)
.++...++...
T Consensus 168 ~~e~~~il~~~ 178 (324)
T 1l8q_A 168 NKTRFKIIKEK 178 (324)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 37
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.11 E-value=2.7e-06 Score=71.80 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=63.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
-.++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++... -++.+.-. . +.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~---~~~~~~ 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-E---YLIDMP 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-T---HHHHCH
T ss_pred cCceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-h---CChHhh
Confidence 357899999999888875432 1123467999999999999999987322 22222111 1 111111
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC-CCCcEEEEecC
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG-ANGSKILVTTR 313 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTTR 313 (505)
. . +.... +.-.|+||++..........+...+... ..+.++|.||.
T Consensus 68 ~----------------------~-~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 68 M----------------------E-LLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp H----------------------H-HHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred h----------------------h-HHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 1 1 11111 2347899999877666666676666543 34567887775
No 38
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=4.6e-06 Score=86.17 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=89.4
Q ss_pred CcccccchhHHHHHHHHhcCCC-----------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-----------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED 231 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 231 (505)
.+++|++..++.+.+++..... .+....+.+.|+|++|+||||+|+.+++.. .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 6799999999999999965110 001234688999999999999999998732 12 2233444443
Q ss_pred CCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH--HHcCCceEEEEEecCCCC---ChhhHHHHHHhhcCCCCCc
Q 037039 232 FGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR--DCLNGKRYLLVMDDVWNE---DPEAWRNLKSLLLGGANGS 306 (505)
Q Consensus 232 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~L~~kr~LlVlDdvw~~---~~~~~~~l~~~l~~~~~gs 306 (505)
.... .+...+.... ..... ........ ....+++.+|+||++... +...+..|...+... +.
T Consensus 114 ~~~~-~~~~~i~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 114 RSKT-LLNAGVKNAL--------DNMSV--VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCHH-HHHHTGGGGT--------TBCCS--TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SS
T ss_pred chHH-HHHHHHHHHh--------ccccH--HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CC
Confidence 3322 2222111110 00000 00000000 012357889999999643 223345555555432 23
Q ss_pred EEEEecCChH---HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 307 KILVTTRSRK---VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 307 ~iivTTR~~~---va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.||+++.... +.. +. .....+.+.+++.++..+++...
T Consensus 181 ~iIli~~~~~~~~l~~-l~--~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FD--RVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp CEEEEESCTTSSTTGG-GT--TTSEEEECCCCCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hH--hceEEEEeCCCCHHHHHHHHHHH
Confidence 4555544322 221 11 12256899999999988887654
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.03 E-value=7.4e-05 Score=73.53 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=35.6
Q ss_pred CcccccchhHHHH---HHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKI---IELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|++..++.+ ...+.... ...+.+.|+|++|+|||+||+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6799999887764 44444321 22357889999999999999999873
No 40
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=2.6e-05 Score=74.55 Aligned_cols=148 Identities=13% Similarity=0.038 Sum_probs=92.9
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc-ccccCCceEEEEecC-CCCHHHHHHHHHHH
Q 037039 167 GRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR-VKEHFELKIWIRVFE-DFGERQIMRKIMEL 244 (505)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~-~~~~~~~~~~il~~ 244 (505)
|-++.++.|.+.+..+ . .+.+.++|++|+||||+|..+.+... ....+....++..++ ...... .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 4455667777777542 2 57889999999999999999876311 111123344554332 222222 2333333
Q ss_pred HHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh-HHHHhhcc
Q 037039 245 IIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR-KVASIMGT 323 (505)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~va~~~~~ 323 (505)
+. .. -..+++-++|+|++........+.|...+....+.+.+|++|.+. .+...+.+
T Consensus 74 ~~---------~~-------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S 131 (305)
T 2gno_A 74 LN---------YS-------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS 131 (305)
T ss_dssp HT---------SC-------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred Hh---------hc-------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc
Confidence 31 00 012456789999998777788888998888777778887776544 34444433
Q ss_pred CCCCCceeCCCCChhhhHHHHHHh
Q 037039 324 RGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 324 ~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
. .+.+.+++.++....+...
T Consensus 132 R----~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 132 R----VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp T----SEEEECCCCHHHHHHHHHH
T ss_pred e----eEeCCCCCHHHHHHHHHHH
Confidence 2 7899999999988887654
No 41
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=8.8e-06 Score=72.90 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=37.9
Q ss_pred Ccccccc----hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 037039 163 PDIIGRD----KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRV 228 (505)
Q Consensus 163 ~~~vGr~----~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 228 (505)
.+|++.+ ..++.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 4566544 344455555554321 112267889999999999999999983 3333334556544
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.00 E-value=6.1e-05 Score=72.71 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=37.5
Q ss_pred CcccccchhHHHHHHHHhcC---C---CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQT---S---DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.|.+.+..+ . .+.....+.+.|+|++|+|||+||+.+++
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 67999999998888776321 0 01112346788999999999999999997
No 43
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.96 E-value=5.7e-05 Score=73.34 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 274 GKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 274 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
+++-++|+|++........+.|...+.....++.+|++|.+.+ +...+.+. ...+.+.+++.++....+...
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR--CRLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc--ceeeeCCCCCHHHHHHHHHHh
Confidence 5678999999987666777888888877666777777776543 33333322 357899999999988877654
No 44
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=3e-05 Score=75.61 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=89.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE-LKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 241 (505)
..++|.+..++.|...+..+ +.+.+.++|++|+||||+|+.+.+... ...+. ...-++.+...... ..+++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~-~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGID-VVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHH-HHHHH
Confidence 56889988888888888643 223388999999999999999987311 11111 12222222222211 11222
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH-HHHh
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK-VASI 320 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-va~~ 320 (505)
+..+... . ..+.+.+-++|+|++........+.|...+......+++|++|.... +...
T Consensus 97 i~~~~~~-------~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 97 IKDFAST-------R-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp HHHHHHB-------C-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHhh-------c-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 2222100 0 00123467899999976666667777777765555677777765432 2222
Q ss_pred hccCCCCCceeCCCCChhhhHHHHHH
Q 037039 321 MGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+... ...+.+.+++.++..+.+..
T Consensus 157 i~sR--~~~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 157 LLSQ--CTRFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp HHTT--SEEEECCCCCHHHHHHHHHH
T ss_pred HHhh--ceeEeccCCCHHHHHHHHHH
Confidence 2221 24678899998887766654
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=0.00013 Score=69.69 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=87.1
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.+++|.+..++.|.+.+...-. .+-...+.+.|+|++|+|||+||+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 6799999999888887653100 00123457889999999999999999973 2222 22222 22
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------------ChhhHHHHHHhhcC
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------------DPEAWRNLKSLLLG 301 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------------~~~~~~~l~~~l~~ 301 (505)
.+ ...+. +. ....+...+.......+.+|+||++... .......+...+..
T Consensus 84 ~l----~~~~~---------g~--~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 84 EL----LTMWF---------GE--SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HH----HHHHH---------TT--CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred HH----Hhhhc---------Cc--hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 22 22221 11 1112233333333456799999999521 01123445544432
Q ss_pred --CCCCcEEEEecCChHHH-HhhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 302 --GANGSKILVTTRSRKVA-SIMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 --~~~gs~iivTTR~~~va-~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+..||.||...... ..+-..+. ...+.+...+.++-.+++...
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 198 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 198 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHH
Confidence 22355677777655322 21111111 145788888888877777543
No 46
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.92 E-value=3.7e-05 Score=84.36 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=79.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc---ccccC-C-ceEEEEecCCCCHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR---VKEHF-E-LKIWIRVFEDFGERQI 237 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~-~~~wv~v~~~~~~~~~ 237 (505)
..++||+.++..+++.|.... ...+.++|++|+||||||+.+++... +.... . ..+++..+.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 569999999999999986532 23467999999999999999987321 10111 1 122332211100
Q ss_pred HHHHHHHHHHhhhhccccCCCCCchH-HHHHHHHHcC-CceEEEEEecCCCCC--------hhhHHHHHHhhcCCCCCcE
Q 037039 238 MRKIMELIIEQIMTNYVFQGDLNTHR-LQQILRDCLN-GKRYLLVMDDVWNED--------PEAWRNLKSLLLGGANGSK 307 (505)
Q Consensus 238 ~~~il~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~L~-~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ 307 (505)
.. ... ..... +...+...-. +++.+|++|++.... ......+...+..+ +..
T Consensus 240 ------g~---------~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~ 301 (854)
T 1qvr_A 240 ------GA---------KYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELR 301 (854)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCC
T ss_pred ------cC---------ccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeE
Confidence 00 000 01111 2222333323 468899999996432 11222344444332 234
Q ss_pred EEEecCChHHHHh---hccCCCCCceeCCCCChhhhHHHHHH
Q 037039 308 ILVTTRSRKVASI---MGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 308 iivTTR~~~va~~---~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
+|.+|........ -........+.+.+++.++...++..
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred EEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHh
Confidence 5555544432110 00111224588999999999888864
No 47
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.92 E-value=7.3e-05 Score=72.21 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=83.6
Q ss_pred CcccccchhHHHHHHHHhcCC------CCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTS------DGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.+++|.+..++.|...+.... .......+-+.|+|++|+|||+||+.+++. ....| +.++.+ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 779999999999988773110 011223457889999999999999999873 22222 222211 1
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCCh-----------hhHHHHHHhhc---CC
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDP-----------EAWRNLKSLLL---GG 302 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~---~~ 302 (505)
+ .... .. .....+...+......++.+|+||++..... .....+...+. ..
T Consensus 87 l----~~~~---------~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 87 L----VSKW---------MG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp H----HTTT---------GG--GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred H----hhcc---------cc--hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 1 0000 00 0011122223333345678999999963211 12334444443 22
Q ss_pred CCCcEEEEecCChHH-HHhhccCCCCCceeCCCCChhhhHHHHHH
Q 037039 303 ANGSKILVTTRSRKV-ASIMGTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 303 ~~gs~iivTTR~~~v-a~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+..||.||..... ...+... -...+.+...+.++-.++|..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~R-f~~~i~~~~p~~~~r~~il~~ 195 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRR-FERRIYIPLPDLAARTTMFEI 195 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHH-CCEEEECCCCCHHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcc-cCeEEEeCCCCHHHHHHHHHH
Confidence 345556667765321 1111110 014567788888888877765
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.90 E-value=4.6e-05 Score=74.77 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHHhcC---CC---CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQT---SD---GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 67999999999998877431 00 0012356788999999999999999987
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.90 E-value=5.5e-05 Score=72.53 Aligned_cols=138 Identities=16% Similarity=0.264 Sum_probs=75.4
Q ss_pred CcccccchhHHHHHHHHhcCC---CCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTS---DGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+...+.... .........+.++|++|+|||++|+.+++. ....-...+.+..+...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 357899998888888776431 011223457899999999999999999873 21111123444444322211 111
Q ss_pred HHHHHHHHhhhhccccCCCCCc-hHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNT-HRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSK 307 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ 307 (505)
. +.. .......... ..+...+.. ...-+|+||++..........|...+.... ..+.
T Consensus 94 ~----l~g----~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 R----LIG----APPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp H----HHC----CCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred H----hcC----CCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 1 110 0000001111 112232222 234699999998777777777777765421 1344
Q ss_pred EEEecCC
Q 037039 308 ILVTTRS 314 (505)
Q Consensus 308 iivTTR~ 314 (505)
+|.||..
T Consensus 163 iI~ttn~ 169 (311)
T 4fcw_A 163 IIMTSNL 169 (311)
T ss_dssp EEEEEST
T ss_pred EEEeccc
Confidence 7777765
No 50
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.85 E-value=0.00015 Score=73.16 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHHhcC----C--CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQT----S--DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.|...+..+ . .+.....+.+.|+|++|+|||+||+.+++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 77999999999998877321 0 00012346788999999999999999997
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.85 E-value=4.4e-05 Score=71.50 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=34.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|.+..+..+.+.+.... .....+.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 458999999999887775432 11245779999999999999999873
No 52
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=0.00012 Score=71.71 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=37.5
Q ss_pred CcccccchhHHHHHHHHhcC----C--CCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQT----S--DGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999998876321 0 000122345789999999999999999983
No 53
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.79 E-value=0.00017 Score=68.64 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHHhcCC------CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTS------DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.+.+.+.... .+-....+.+.|+|++|+||||||+.+++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 679999999999988774310 00012246788999999999999999987
No 54
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.77 E-value=2.4e-05 Score=66.37 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+.|+|+.|+|||||++.+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00018 Score=66.87 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=34.5
Q ss_pred CcccccchhHHHHHHHHhc---CCC---CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQ---TSD---GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.+.+.+.. ... -+....+-+.|+|++|+||||||+.+++
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 6799999888777665421 100 0011234578999999999999999987
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.72 E-value=5.5e-05 Score=77.09 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=85.7
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
..++|.+..+++|.+++..... -+.....-+.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 5689999999999887753200 00123356889999999999999999873 22222 222211
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------C---hhhHHHHHHhhcC--C
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------D---PEAWRNLKSLLLG--G 302 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------~---~~~~~~l~~~l~~--~ 302 (505)
.+. ..+ .+.....+...+.....+++.+|+||++... . ......|...+.. .
T Consensus 273 ~l~----~~~-----------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 273 EIM----SKL-----------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp HHH----TSC-----------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT
T ss_pred Hhh----hhh-----------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc
Confidence 110 000 0000111333444444567889999998311 1 1222334444442 2
Q ss_pred CCCcEEEEecCChH-HHHhhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 303 ANGSKILVTTRSRK-VASIMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 303 ~~gs~iivTTR~~~-va~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+..||.||.... +...+...+. ...+.+...+.++-.++|...
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~ 384 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHH
Confidence 23445555665442 2222222111 135788888888888887653
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.71 E-value=7.5e-05 Score=71.41 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=84.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc-ccccCCceEEEEecCCCCHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR-VKEHFELKIWIRVFEDFGERQIMRKI 241 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i 241 (505)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++... ....| +.++.+.- . ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~-~-~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAAL-N-ESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSC-C-HHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCC-C-hHHHHH-
Confidence 358999999999988886542 1223567999999999999999987321 11122 23333322 1 122111
Q ss_pred HHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcEEEE
Q 037039 242 MELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSKILV 310 (505)
Q Consensus 242 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiv 310 (505)
.+....... ...... .....+... ..-.|+||++..........|...+.... ...+||.
T Consensus 72 --~lfg~~~g~--~tg~~~--~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 72 --ELFGHEKGA--FTGADK--RREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp --HHTCCCSSC--CC---C--CCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred --HhcCccccc--cCchhh--hhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 121100000 000000 000111111 12468999998776666667777665432 3467887
Q ss_pred ecCChHHHHhhcc--C-------CCCCceeCCCCC--hhhhHHHHHH
Q 037039 311 TTRSRKVASIMGT--R-------GGTTGYNLQGLP--FEDCLSLFMK 346 (505)
Q Consensus 311 TTR~~~va~~~~~--~-------~~~~~~~l~~L~--~~~~~~Lf~~ 346 (505)
||... ....+.. . -....+.+.+|. .++...|+..
T Consensus 143 atn~~-l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 143 ATHRD-LAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp EESSC-HHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHH
T ss_pred ecCcc-HHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHH
Confidence 77653 1111100 0 001347788998 4666555544
No 58
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.70 E-value=0.00018 Score=71.39 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..++.|...+..... ......+.+.|+|++|+|||+||+.+++
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999887732100 0012245788999999999999999987
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00029 Score=69.17 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=86.0
Q ss_pred CCCC-CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 159 PNVP-PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 159 ~~~~-~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
|.+. .++.|.++.+++|.+.+.-+-. .+-..++-|.++|++|+|||.||+.+++ ....+| +.+..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHH
Confidence 4444 7889999999888776542100 0123346678999999999999999998 333332 2333222
Q ss_pred CCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC----------hh----hHHHHH
Q 037039 231 DFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED----------PE----AWRNLK 296 (505)
Q Consensus 231 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~----~~~~l~ 296 (505)
-.+.. .+.....+...+...-...+++|.+|++.... .. ....+.
T Consensus 218 l~sk~---------------------vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 276 (405)
T 4b4t_J 218 LVQKY---------------------IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276 (405)
T ss_dssp GSCSS---------------------TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHH
T ss_pred hhccc---------------------cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHH
Confidence 11100 00001112222333334578999999996321 01 122333
Q ss_pred HhhcC--CCCCcEEEEecCChHH-HHhh-ccCCCCCceeCCCCChhhhHHHHHH
Q 037039 297 SLLLG--GANGSKILVTTRSRKV-ASIM-GTRGGTTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 297 ~~l~~--~~~gs~iivTTR~~~v-a~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~ 346 (505)
..+.. ...+..||.||...+. -..+ ...--...+.+...+.++-.++|..
T Consensus 277 ~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 277 NQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp HHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred HhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 33332 2334456666654432 1212 1111125678887777777777754
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.66 E-value=0.00011 Score=74.74 Aligned_cols=44 Identities=32% Similarity=0.539 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++||+.+++.+...|.... ..-+.|+|++|+|||+||+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 569999999999999997532 23457999999999999999987
No 61
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00031 Score=69.96 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=84.0
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|-++.+++|.+.+..+-. .+-..++-|.++|++|+|||+||+.+++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 6788999998888776643100 01234567889999999999999999983 32222 2333322111
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCc-hH-HHHHHHHHcCCceEEEEEecCCCC-----------Ch---hhHHHHHHhh
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNT-HR-LQQILRDCLNGKRYLLVMDDVWNE-----------DP---EAWRNLKSLL 299 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~-~~-l~~~l~~~L~~kr~LlVlDdvw~~-----------~~---~~~~~l~~~l 299 (505)
..... .. +...+...-...+++|++|++... +. .....+...+
T Consensus 254 ---------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 254 ---------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM 312 (437)
T ss_dssp ---------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH
T ss_pred ---------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh
Confidence 00001 11 222223333457899999999631 00 1223344444
Q ss_pred cC--CCCCcEEEEecCChHHHH-hhccCCC-CCceeCCCCChhhhHHHHHH
Q 037039 300 LG--GANGSKILVTTRSRKVAS-IMGTRGG-TTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 300 ~~--~~~gs~iivTTR~~~va~-~~~~~~~-~~~~~l~~L~~~~~~~Lf~~ 346 (505)
.. ...+..||.||...+... .+--.+. ...+.+...+.++-.++|..
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHH
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHH
Confidence 32 234556777776554321 1111011 13467776677766677653
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.61 E-value=0.0003 Score=76.31 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=84.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc---ccc-cCCceEEE-EecCCCCHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR---VKE-HFELKIWI-RVFEDFGERQI 237 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~-~F~~~~wv-~v~~~~~~~~~ 237 (505)
..++||+.+++.+.+.|... ...-+.|+|++|+|||++|+.+.+... +.. .+...+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 56999999999999998643 234467999999999999999987321 111 12333332 11100
Q ss_pred HHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCC--------ChhhHHH-HHHhhcCCCCCcEE
Q 037039 238 MRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNE--------DPEAWRN-LKSLLLGGANGSKI 308 (505)
Q Consensus 238 ~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~--------~~~~~~~-l~~~l~~~~~gs~i 308 (505)
+ . .. ...+.....+...+......++.+|++|++... ....... |...+.. .+..+
T Consensus 254 -------~-~----~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~ 318 (758)
T 1r6b_X 254 -------L-A----GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_dssp ---------C----CC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEE
T ss_pred -------h-c----cc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEE
Confidence 0 0 00 000000111333333333456789999999643 1222222 2222222 23556
Q ss_pred EEecCChHHHHhhccC----CCCCceeCCCCChhhhHHHHHHh
Q 037039 309 LVTTRSRKVASIMGTR----GGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 309 ivTTR~~~va~~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
|.+|............ .....+.+...+.++..+++...
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 6666544432111100 01135789999999988887653
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.59 E-value=0.00012 Score=70.05 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=36.8
Q ss_pred CcccccchhHHHHHHHHhcC--CCC------CCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQT--SDG------KSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998877541 000 001235677999999999999999987
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.58 E-value=3.9e-05 Score=71.97 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=35.7
Q ss_pred CcccccchhHHHHHHHHhcCCCC------CCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG------KSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 67999999888888765420000 0011233779999999999999999873
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.58 E-value=0.0004 Score=75.25 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=89.2
Q ss_pred CcccccchhHHHHHHHHhcCCCC---CCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG---KSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+...+.....+ .......+.++|++|+|||+||+.+++.. ...-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 56899999999988887643211 11233478999999999999999998732 1111223444443211100
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCC-----------CCCcEE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGG-----------ANGSKI 308 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~i 308 (505)
......+...++. ....+|+||++..........|...+..+ ....+|
T Consensus 565 ------------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i 623 (758)
T 3pxi_A 565 ------------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIL 623 (758)
T ss_dssp ------------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEE
T ss_pred ------------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEE
Confidence 0000111222222 23448999999877777777777777642 134678
Q ss_pred EEecCC-----hHH----HHhhcc--CCC-CCceeCCCCChhhhHHHHHH
Q 037039 309 LVTTRS-----RKV----ASIMGT--RGG-TTGYNLQGLPFEDCLSLFMK 346 (505)
Q Consensus 309 ivTTR~-----~~v----a~~~~~--~~~-~~~~~l~~L~~~~~~~Lf~~ 346 (505)
|+||.. ..+ ...+.. ... ...+.+.+|+.++-..++..
T Consensus 624 I~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 624 IMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp EEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHH
T ss_pred EEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHH
Confidence 888873 111 111100 011 14688999999888777764
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=0.0004 Score=70.27 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=82.7
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD------GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 236 (505)
.+++|.+..++++.+.+..... -+-.-.+-+.|+|++|+|||+||+.+++. ....| +.++.++-....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~~- 89 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVELF- 89 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTCC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHHH-
Confidence 6799999888777765432110 00111234779999999999999999873 22222 223322211100
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCCh--------------hhHHHHHHhhcC-
Q 037039 237 IMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDP--------------EAWRNLKSLLLG- 301 (505)
Q Consensus 237 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~- 301 (505)
...........+.......+.+|+||++..... .....+...+..
T Consensus 90 --------------------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 90 --------------------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred --------------------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 000011122334444456789999999953210 123334433321
Q ss_pred -CCCCcEEEEecCChHHHH-hhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 302 -GANGSKILVTTRSRKVAS-IMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 302 -~~~gs~iivTTR~~~va~-~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
...+..||.||...+... .+-..+. ...+.+...+.++-.+++..+
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 223556777776654322 1111011 135677777777666666543
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00047 Score=68.64 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=37.2
Q ss_pred CcccccchhHHHHHHHHhc----CC---CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQ----TS---DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|.++.+++|.+.+.- +. .-+-..++-|.++|++|+|||+||+.+++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 6789999999888775422 00 00123456788999999999999999998
No 68
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00059 Score=67.86 Aligned_cols=54 Identities=28% Similarity=0.297 Sum_probs=39.5
Q ss_pred CCCC-CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 159 PNVP-PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 159 ~~~~-~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|.+. .++.|-++.+++|.+.+..+-. -+-..++-+.++|++|+|||+||+.+++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344 7889999999988876642100 0123456688999999999999999998
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.40 E-value=0.00027 Score=68.45 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=82.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
..++|++..++.+...+... .-+.++|++|+|||+||+.+.+ .....| ..+.........++.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~---- 89 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLI---- 89 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHH----
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcC----
Confidence 45899999999888888643 3577999999999999999987 222222 223332222222211
Q ss_pred HHHHHhhhhccccCCCCCchHHHHHHHHHcCC--ceEEEEEecCCCCChhhHHHHHHhhcCC-----------CCCcEEE
Q 037039 243 ELIIEQIMTNYVFQGDLNTHRLQQILRDCLNG--KRYLLVMDDVWNEDPEAWRNLKSLLLGG-----------ANGSKIL 309 (505)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~ii 309 (505)
.. .......... ....+ ...+|++|++..........|...+... .....|+
T Consensus 90 ----g~----~~~~~~~~~~-------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 90 ----GT----MIYNQHKGNF-------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp ----EE----EEEETTTTEE-------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ----Cc----eeecCCCCce-------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 00 0000000000 00001 1258999999876666666666655432 2244555
Q ss_pred EecCChH------HHHhhccCCCCCceeCCCCChhhhHHHHHHh
Q 037039 310 VTTRSRK------VASIMGTRGGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 310 vTTR~~~------va~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
.|+.... +...+...- ...+.+...+.++-.+++...
T Consensus 155 at~np~~~~~~~~l~~~l~~Rf-~~~i~i~~p~~~~~~~il~~~ 197 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVDRF-MMKIHLTYLDKESELEVMRRV 197 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHTTS-SEEEECCCCCHHHHHHHHHHH
T ss_pred EecCCCcccCcccCCHHHHhhe-eEEEEcCCCCHHHHHHHHHhc
Confidence 5554221 111111110 024788888888888777654
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00021 Score=71.09 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=39.4
Q ss_pred CCCC-CcccccchhHHHHHHHHhc----CC---CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 159 PNVP-PDIIGRDKDREKIIELLMQ----TS---DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 159 ~~~~-~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|... .++.|-++.+++|.+.+.. +. ..+-..++-|.++|++|+|||.||+.+++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3444 7899999999998876432 10 00123456788999999999999999998
No 71
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.39 E-value=0.00011 Score=70.39 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 170 KDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+..+.+++.... ......+.|+|++|+|||+||..+++.
T Consensus 135 ~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445556665432 112467889999999999999999983
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00038 Score=75.44 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=78.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcccc---ccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQR---VKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++||+.+++.+...|.... ..-+.++|++|+|||++|+.+.+... +-......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 569999999999999997532 23467999999999999999987310 001111111221111
Q ss_pred HHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 240 KIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
+. ...+.....+...+......++.+|++|.- ...-..|...+.. ...++|.||.......
T Consensus 245 ------g~-------~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 245 ------GT-------KYRGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRK 305 (758)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHH
T ss_pred ------cc-------cccchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHH
Confidence 00 000001112333444444567889999921 1222233333332 2345666555443111
Q ss_pred hhccC----CCCCceeCCCCChhhhHHHHHHh
Q 037039 320 IMGTR----GGTTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 320 ~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..... .....+.+...+.++...++...
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 11000 01145889999999999888743
No 73
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.23 E-value=0.0015 Score=58.87 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=50.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHH---hhhhccccCC--CCCc-hH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIE---QIMTNYVFQG--DLNT-HR 263 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~---~~~~~~~~~~--~~~~-~~ 263 (505)
-.++.|+|.+|+|||||+..+.. ..-..++|+.....++...+.. +...+.. .......... .... ..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999876 1224577877666555544332 3222110 0000000111 1111 12
Q ss_pred HHHHHHHHcCCceEEEEEecCCC
Q 037039 264 LQQILRDCLNGKRYLLVMDDVWN 286 (505)
Q Consensus 264 l~~~l~~~L~~kr~LlVlDdvw~ 286 (505)
....++..+..+.-+||+|.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44455555544577999999853
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.23 E-value=0.0005 Score=65.26 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..+..+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999983
No 75
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00088 Score=66.04 Aligned_cols=54 Identities=28% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCCC-CcccccchhHHHHHHHHhcC---CC----CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 159 PNVP-PDIIGRDKDREKIIELLMQT---SD----GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 159 ~~~~-~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|.+. .++.|.++.+++|.+.+..+ .. .+-..++-|.++|++|+|||.||+.+++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 3444 77899999988887765321 00 0123456788999999999999999998
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.21 E-value=0.0015 Score=71.70 Aligned_cols=138 Identities=15% Similarity=0.259 Sum_probs=74.7
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+...+..... +.+.....+.|+|++|+|||++|+.+.+.. ...-...+.++.+.-.... ...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~-~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSG-GGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchh-HHH
Confidence 3579999999998887754311 112234578899999999999999998732 1111122334433322110 000
Q ss_pred HHHHHHHHhhhhccccCCCCCc-hHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------CCcE
Q 037039 240 KIMELIIEQIMTNYVFQGDLNT-HRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------NGSK 307 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ 307 (505)
.++. . .+...+... ..+...+.. ...-+|+||++...+......|...+..+. .++.
T Consensus 635 ~l~g---~-----~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 635 RLIG---A-----PPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GC----------------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHcC---C-----CCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 0000 0 000000111 113333332 234689999998777777888888877542 2445
Q ss_pred EEEecCC
Q 037039 308 ILVTTRS 314 (505)
Q Consensus 308 iivTTR~ 314 (505)
||+||..
T Consensus 704 iI~tsn~ 710 (854)
T 1qvr_A 704 IILTSNL 710 (854)
T ss_dssp EEEECCT
T ss_pred EEEecCc
Confidence 7777764
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.21 E-value=0.0012 Score=68.28 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=34.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.++....+.+.+.-..-.......++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45788888777776544311000012356899999999999999999987
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.18 E-value=0.0019 Score=69.22 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=85.4
Q ss_pred CcccccchhHHHHHHHHhc----CC---CCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 163 PDIIGRDKDREKIIELLMQ----TS---DGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.++.|.++.+++|.+.+.- +. .-+-..++-|.++|++|+|||+||+.+++. ...+| +.++.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 6788999988888876532 11 011234567889999999999999999983 33222 2332211
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHHHcCCceEEEEEecCCCCC-------hh----hHHHHHHhhcCC--
Q 037039 236 QIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRDCLNGKRYLLVMDDVWNED-------PE----AWRNLKSLLLGG-- 302 (505)
Q Consensus 236 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~-------~~----~~~~l~~~l~~~-- 302 (505)
++. ...+.....+...+.......+.+|+||++.... .+ ....|...+...
T Consensus 274 -----l~s-----------k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 274 -----IMS-----------KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp -----HHS-----------SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred -----hhc-----------ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 100 0000111224445555556789999999995311 11 122233333221
Q ss_pred CCCcEEEEecCCh-HHHHhhccCCC-CCceeCCCCChhhhHHHHHHh
Q 037039 303 ANGSKILVTTRSR-KVASIMGTRGG-TTGYNLQGLPFEDCLSLFMKF 347 (505)
Q Consensus 303 ~~gs~iivTTR~~-~va~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 347 (505)
..+..||.||... .+-..+...+. ...+.+...+.++-.++|..+
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~ 384 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHT
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHH
Confidence 2233455555443 33222221111 145777777777777777654
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.03 E-value=0.0044 Score=59.89 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=35.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 5688988777777666643200 012346789999999999999999987
No 80
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.0038 Score=58.43 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=32.8
Q ss_pred CcccccchhHHHHHHHHhcCCC--------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD--------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|.++.++.|.+.+...-. +-..... +.|+|++|+||||||+.++.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 6788888888887765421100 0011122 89999999999999999987
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.92 E-value=0.005 Score=62.60 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=35.0
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD------GKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..+.++.+....... -+-.-.+-+.|+|++|+||||||+.+++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6799999887777665432100 00011223889999999999999999873
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.89 E-value=0.0039 Score=67.46 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=72.9
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHH
Q 037039 163 PDIIGRDKDREKIIELLMQTSD---GKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMR 239 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 239 (505)
..++|.+..++.+...+..... ..+.....+.++|++|+|||++|+.+.+.. . ...+.+..+.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 4588999998888877753211 012234578899999999999999998732 1 1223334333211100
Q ss_pred HHHHHHHHhhhhccccCCCCCc----hHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCC-----------C
Q 037039 240 KIMELIIEQIMTNYVFQGDLNT----HRLQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGA-----------N 304 (505)
Q Consensus 240 ~il~~l~~~~~~~~~~~~~~~~----~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~ 304 (505)
...+ + . ...+... ..+...++. ....+|+||++..........|...+..+. .
T Consensus 530 --~~~l---~-g---~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 530 --VSRL---I-G---APPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp --CSSS---C-C---CCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred --Hhhh---c-C---CCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 0000 0 0 0000000 012222322 346799999998777777777777766431 2
Q ss_pred CcEEEEecCC
Q 037039 305 GSKILVTTRS 314 (505)
Q Consensus 305 gs~iivTTR~ 314 (505)
...||.||..
T Consensus 598 ~~~iI~tsN~ 607 (758)
T 1r6b_X 598 NVVLVMTTNA 607 (758)
T ss_dssp TEEEEEEECS
T ss_pred CeEEEEecCc
Confidence 3457777754
No 83
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.00057 Score=64.79 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=25.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRV 228 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 228 (505)
-+++.|+|++|+|||+||.++... .-..++|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 456789999999999999999863 1123456666
No 84
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.82 E-value=0.0067 Score=52.72 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=40.8
Q ss_pred cCCceEEEEEecCC---CCChhhHHHHHHhhcCCCCCcEEEEec---CChHHHHhhccCCCCCceeCCCCChhhhHH
Q 037039 272 LNGKRYLLVMDDVW---NEDPEAWRNLKSLLLGGANGSKILVTT---RSRKVASIMGTRGGTTGYNLQGLPFEDCLS 342 (505)
Q Consensus 272 L~~kr~LlVlDdvw---~~~~~~~~~l~~~l~~~~~gs~iivTT---R~~~va~~~~~~~~~~~~~l~~L~~~~~~~ 342 (505)
+..++-+++||.+. ..+....+.+...+.. .+..+|++| .+...+..++.......+.+...+.++...
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 55667799999942 1234444556666655 344466666 355566555554334678888777665543
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.80 E-value=0.0036 Score=67.91 Aligned_cols=50 Identities=26% Similarity=0.240 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHHhcCC-------CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTS-------DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|.+..+++|.+++...- .-.-.....|.|+|++|+||||||+.+.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 678999999999988875310 00012345688999999999999999987
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.76 E-value=0.004 Score=61.23 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=34.6
Q ss_pred CcccccchhHHHHHHHHhc----CCC--------------------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQ----TSD--------------------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~~--------------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|.+..++.|...+.. ... +.......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578888888888776620 000 0011234678999999999999999987
No 87
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.61 E-value=0.0022 Score=57.07 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 168 RDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|+..++.|.+.+.... .....+|+|.|++|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566777888776532 24567999999999999999998875
No 88
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.56 E-value=0.0035 Score=63.46 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=35.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|.+..++.+..++..-..+ ....+-+.++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~-~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSK-KMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT-CCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 77999998887655444221110 122356789999999999999999873
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.50 E-value=0.0073 Score=52.92 Aligned_cols=119 Identities=17% Similarity=0.154 Sum_probs=61.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCC---CCHHHHHHHHHHHHHHhhh---hccccCCCC-----
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFED---FGERQIMRKIMELIIEQIM---TNYVFQGDL----- 259 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~il~~l~~~~~---~~~~~~~~~----- 259 (505)
..|.|++..|.||||+|-...- +...+=-.+.++..... .....++.. +.-... .........
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHH
Confidence 5677788888999999976654 22222223344433332 222333322 210000 000000000
Q ss_pred -CchHHHHHHHHHcCCceE-EEEEecCCC---CChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 260 -NTHRLQQILRDCLNGKRY-LLVMDDVWN---EDPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 260 -~~~~l~~~l~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
.........++.+.+.+| |||||++-. ......+.+...+........||+|+|+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 001133445556655555 999999821 12233455666676666677899999986
No 90
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.39 E-value=0.0063 Score=58.97 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=51.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
+.-.++.|+|++|+||||||.++... ....=..++|+.....++.. .++.+..... ........+..+....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~-~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLK-SLLISQPDHGEQALEI 130 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGG-GCEEECCSSHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchh-hhhhhhccCHHHHHHH
Confidence 34479999999999999999998863 22222346788776666543 3333422111 0001112223334444
Q ss_pred HHHHcC-CceEEEEEecCC
Q 037039 268 LRDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 268 l~~~L~-~kr~LlVlDdvw 285 (505)
+...++ .+.-++|+|.+-
T Consensus 131 ~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHHTSCCSEEEEECTT
T ss_pred HHHHhhhcCCCeEEehHhh
Confidence 444433 455689999974
No 91
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.14 E-value=0.089 Score=47.56 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhh-cCCCCCcEEEEecCChHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLL-LGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l-~~~~~gs~iivTTR~~~va~ 319 (505)
.|.+.|-.++=+++||.--.. |...-..+...+ .....|..||++|.+...+.
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 344555567778899997532 555555566543 33334677888998877654
No 92
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.09 E-value=0.01 Score=57.55 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=50.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
.-.++.|+|.+|+||||||.++... ....=..++|++....++.. ..+.++.... ........+..+....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~-~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTD-SLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGG-GCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHH-HeEEecCCCHHHHHHHH
Confidence 3468999999999999999998763 22222357888887766543 1222221100 00011112223344444
Q ss_pred HHHcC-CceEEEEEecCC
Q 037039 269 RDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 269 ~~~L~-~kr~LlVlDdvw 285 (505)
..... .+.-+||+|.+-
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 44443 356699999984
No 93
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.03 E-value=0.012 Score=57.38 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=51.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
.-.++.|.|.+|+||||||.++... ....-..++|++....++.. ....+..... ........+..++...+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~-~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTD-ELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGG-GCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHH-HceeecCCcHHHHHHHH
Confidence 3458889999999999999888763 22222367899887766543 1222211100 00001112223355555
Q ss_pred HHHcC-CceEEEEEecCC
Q 037039 269 RDCLN-GKRYLLVMDDVW 285 (505)
Q Consensus 269 ~~~L~-~kr~LlVlDdvw 285 (505)
....+ ...-+||+|.+-
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 55544 345599999984
No 94
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.0044 Score=55.38 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23457999999999999999999876
No 95
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.99 E-value=0.0032 Score=54.18 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=18.7
Q ss_pred eEEEEEecCCChHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLV 210 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v 210 (505)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.98 E-value=0.0051 Score=55.48 Aligned_cols=114 Identities=14% Similarity=0.002 Sum_probs=59.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
-.++.|+|..|+||||++..+.+. ...+-..++.+....+ .. ....++..++... ....-....++.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~----~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSL----PSVEVESAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSS----CCEEESSTHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCc----cccccCCHHHHHHHHH
Confidence 468889999999999999887763 2222223333332221 11 1112222221000 0000012233555555
Q ss_pred HHcCCceE-EEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 270 DCLNGKRY-LLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 270 ~~L~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
+.+.+.++ +||+|.+...+.+..+.+.. +.+ .|..||+|-+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 55544444 99999996544444444433 322 267899998844
No 97
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.97 E-value=0.016 Score=55.65 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=53.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccc---------cC-----CceEEEEecCCCCHHHHHHHHHHHHHHhhh---h
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKE---------HF-----ELKIWIRVFEDFGERQIMRKIMELIIEQIM---T 251 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---~ 251 (505)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++...+.. +++.+..... .
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 347899999999999999998875321111 11 3678888887777666553 3344321110 0
Q ss_pred ccccCCCCCch---HHHHHHHHHcC--CceEEEEEecCC
Q 037039 252 NYVFQGDLNTH---RLQQILRDCLN--GKRYLLVMDDVW 285 (505)
Q Consensus 252 ~~~~~~~~~~~---~l~~~l~~~L~--~kr~LlVlDdvw 285 (505)
+.......+.. ++...+...+. .+.-+||+|.+-
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 00001111212 13334444443 356699999983
No 98
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.96 E-value=0.0042 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999873
No 99
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.95 E-value=0.015 Score=51.71 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=48.3
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHH---HHHhhhhccccCCCCCchHHHHHH
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMEL---IIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~---l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
+|.|.|++|+||+|.|+.+... |. ...++ .-+++++-+.. ++.....-...+.-.+..-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5779999999999999999863 22 12232 23444433221 111111000012222333366777
Q ss_pred HHHcCCceEEEEEecCCCCChhhHHHHHHhh
Q 037039 269 RDCLNGKRYLLVMDDVWNEDPEAWRNLKSLL 299 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l 299 (505)
.+.+..... +|||+.=. ...+.+.|...+
T Consensus 69 ~~~l~~~~~-~ilDGfPR-t~~Qa~~l~~~l 97 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR-TVKQAEALDEML 97 (206)
T ss_dssp HHHCCSSSC-EEEESCCC-SHHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCCch-hHHHHHHHHhhH
Confidence 777765544 68899732 233444444433
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.92 E-value=0.0029 Score=61.55 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=64.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
.+++|+|+.|+|||||.+.+... +.......+ +.+.++.... .... ...... .............|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~------~~~~-~~~v~q--~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV------HESK-KCLVNQ--REVHRDTLGFSEALRS 191 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC------CCCS-SSEEEE--EEBTTTBSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh------hhcc-ccceee--eeeccccCCHHHHHHH
Confidence 59999999999999999988762 222112222 2222221100 0000 000000 0011122335668889
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHHh
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVASI 320 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~ 320 (505)
.|...+=+|++|.+- +.+.+..+..... .|..||+||...+.+..
T Consensus 192 aL~~~PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 192 ALREDPDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HTTSCCSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred HhhhCcCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 999999999999995 4566665555433 36669999988776643
No 101
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.91 E-value=0.015 Score=55.87 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEecCCCCHHHHHHHHHHHHHHhhh---hccccCCCCCc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEH----FELKIWIRVFEDFGERQIMRKIMELIIEQIM---TNYVFQGDLNT 261 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~ 261 (505)
.-.++.|+|.+|+||||||.+++........ -..++|++....++...+.. +++.+..... .+.......+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999988763211111 23678988877777665543 3333311100 00000111121
Q ss_pred h---HHHHHHHHHcC--CceEEEEEecCC
Q 037039 262 H---RLQQILRDCLN--GKRYLLVMDDVW 285 (505)
Q Consensus 262 ~---~l~~~l~~~L~--~kr~LlVlDdvw 285 (505)
. ++...+...+. .+.-+||+|.+-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 13344444443 456799999983
No 102
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.91 E-value=0.0057 Score=62.24 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=35.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|.+..++.+...+..+ .-|.|+|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 34889999998888877643 35779999999999999999873
No 103
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.90 E-value=0.034 Score=51.46 Aligned_cols=51 Identities=8% Similarity=0.082 Sum_probs=31.4
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
.|...|-.++=+++||.--. .|...-..+...+..... .||++|.+.+.+.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~ 189 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLN 189 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGG
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHH
Confidence 34555666777999999753 244455555555544333 6888888765543
No 104
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.87 E-value=0.0059 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999998876
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.86 E-value=0.0036 Score=54.19 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 106
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.11 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++.+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888875
No 107
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.86 E-value=0.0041 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0039 Score=53.55 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 109
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.80 E-value=0.0076 Score=55.62 Aligned_cols=50 Identities=28% Similarity=0.463 Sum_probs=33.4
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..+.++.+....... +-..... +.|+|++|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 6789988777766554432100 0001122 889999999999999999873
No 110
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.77 E-value=0.066 Score=51.84 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=37.7
Q ss_pred HHHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 265 QQILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 265 ~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
.-.|.+.|..++=+|++|.--+. |...-..+...+..- ..|..||++|.+.+++..++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 34566777888889999997432 444444444444431 23778999999988776543
No 111
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.76 E-value=0.02 Score=54.07 Aligned_cols=87 Identities=7% Similarity=0.079 Sum_probs=49.8
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccC--CceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHH-HHHH
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHF--ELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRL-QQIL 268 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l-~~~l 268 (505)
++-|.|++|+|||||+.++... ....+ ..++|++....++.. .+++++.....-. .....+..+. ...+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~ll-v~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVI-HTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEE-EEECSBHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeE-EEcCCCHHHHHHHHH
Confidence 7899999999999999888763 22332 357888877777653 2444432211100 0111122223 2222
Q ss_pred HHH--c-CCceEEEEEecCCC
Q 037039 269 RDC--L-NGKRYLLVMDDVWN 286 (505)
Q Consensus 269 ~~~--L-~~kr~LlVlDdvw~ 286 (505)
... + +++.-|||+|-+-.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 222 2 45678999999853
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.73 E-value=0.0049 Score=54.59 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 113
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.69 E-value=0.0093 Score=56.93 Aligned_cols=46 Identities=9% Similarity=0.221 Sum_probs=32.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 165 IIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++|-...+..+...+..... ...+.+|+|.|+.|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44544555555555544321 35677999999999999999998865
No 114
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.68 E-value=0.029 Score=54.32 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQIM 238 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~ 238 (505)
+.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~ 174 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 174 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3457899999999999999998876321111 12467899887777766544
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.67 E-value=0.0062 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.|+|++|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 116
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0053 Score=53.41 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.63 E-value=0.0045 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 118
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.63 E-value=0.0076 Score=58.94 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHhcC-------C--CCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 164 DIIGRDKDREKIIELLMQT-------S--DGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789888888888777210 0 00012345688999999999999999987
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.60 E-value=0.0067 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.57 E-value=0.0055 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 121
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.55 E-value=0.0074 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|++|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997654
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.53 E-value=0.051 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....++.|+|++|+||||++..++.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3457999999999999999999886
No 123
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.52 E-value=0.015 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=18.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966654
No 124
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.51 E-value=0.0078 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999876
No 125
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.51 E-value=0.012 Score=56.68 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=31.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 166 IGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
|+.+.-.+.+++.+...-. ......|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445556666666643221 23456788999999999999998876
No 126
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.48 E-value=0.0071 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 127
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.48 E-value=0.011 Score=55.50 Aligned_cols=50 Identities=28% Similarity=0.463 Sum_probs=34.2
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..+.++.+....... +-..... +.|+|++|+||||||+.+++.
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 6789998877777655432100 0001122 889999999999999999873
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.48 E-value=0.0087 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.-.+|+|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 129
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.46 E-value=0.0071 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|+|+|++|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 130
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.44 E-value=0.006 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999875
No 131
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.43 E-value=0.0073 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 132
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.43 E-value=0.0082 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999976
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.41 E-value=0.0082 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 134
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.40 E-value=0.0096 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999976
No 135
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.39 E-value=0.011 Score=54.52 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.+...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 234567899999999999999999876
No 136
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.38 E-value=0.021 Score=55.46 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=33.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
.-.++.|.|.+|+||||||.++... ....=..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH
Confidence 3468999999999999999988763 22222367888887766643
No 137
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.36 E-value=0.042 Score=58.93 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSD-------GKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|.++.++.|.+.+..+.. .+-...+-+.++|++|.|||.||+.+++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6678888888888776543211 1122345577999999999999999998
No 138
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.36 E-value=0.19 Score=48.37 Aligned_cols=129 Identities=12% Similarity=-0.032 Sum_probs=79.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
.++..++|+.|.||++.+..+.+... ...|+....+.+....+..++ ...+. .
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l----~~~~~----------------------~ 70 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI----FSLCQ----------------------A 70 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH----HHHHH----------------------H
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH----HHHhc----------------------C
Confidence 46888999999999999988876321 123432222223333333322 22220 0
Q ss_pred HHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCC-------hHHHHhhccCCCCCceeCCCCChhhhH
Q 037039 270 DCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRS-------RKVASIMGTRGGTTGYNLQGLPFEDCL 341 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~-------~~va~~~~~~~~~~~~~l~~L~~~~~~ 341 (505)
.-+-+++-++|+|++.. .....++.|...+....+++.+|++|.. ..+...+... ...+...+++.++-.
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr--~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR--SVQVTCQTPEQAQLP 148 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT--CEEEEECCCCTTHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC--ceEEEeeCCCHHHHH
Confidence 11235567888999876 5667888899888876677887776643 2344444332 256888899988877
Q ss_pred HHHHHh
Q 037039 342 SLFMKF 347 (505)
Q Consensus 342 ~Lf~~~ 347 (505)
..+...
T Consensus 149 ~~l~~~ 154 (343)
T 1jr3_D 149 RWVAAR 154 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 139
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.36 E-value=0.069 Score=51.60 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
-.|.+.|-.++=+|+||.--+. |...-..+...+..- ..|..||++|.+...+..++
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 213 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence 3456667778889999997432 443333444443321 12567898999877665543
No 140
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.35 E-value=0.0084 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 141
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.34 E-value=0.008 Score=55.44 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 142
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.33 E-value=0.013 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 143
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.32 E-value=0.007 Score=58.69 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|.+..+..+...+... ...-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHh
Confidence 67999988666654444322 1223889999999999999999873
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.31 E-value=0.0063 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 145
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.29 E-value=0.0077 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.28 E-value=0.0087 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 147
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.27 E-value=0.0081 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 148
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0088 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.25 E-value=0.0099 Score=52.67 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..+|.|.|++|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 150
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.25 E-value=0.0094 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++|+|++|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.24 E-value=0.0071 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.23 E-value=0.0088 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.22 E-value=0.0078 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++|.|.|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 154
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.22 E-value=0.009 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999875
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.22 E-value=0.0098 Score=54.90 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 156
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 157
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.19 E-value=0.01 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999886
No 158
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.18 E-value=0.036 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+.+.|.|.+|+||||++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38899999999999999888763
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.16 E-value=0.0073 Score=52.16 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.16 E-value=0.0075 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999876
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.16 E-value=0.0091 Score=52.82 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999986
No 162
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.14 E-value=0.01 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 163
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.12 E-value=0.22 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.11 E-value=0.01 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 165
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.06 E-value=0.015 Score=50.79 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|.|.|++|+||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 166
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.06 E-value=0.012 Score=54.56 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 167
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.05 E-value=0.063 Score=52.92 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=31.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~ 236 (505)
.-.++.|+|++|+|||||+..++-...... .-..++|+.....++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r 228 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR 228 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH
Confidence 346899999999999999997652111111 223578887766555544
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.05 E-value=0.0091 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 169
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.04 E-value=0.0076 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.04 E-value=0.013 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 171
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.02 E-value=0.012 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 172
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.00 E-value=0.015 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.99 E-value=0.011 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 174
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.95 E-value=0.013 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 175
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.94 E-value=0.056 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.063 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-..++|+|.+|+|||||++.+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHH
Confidence 35789999999999999998876
No 176
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.94 E-value=0.014 Score=55.69 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457999999999999999999876
No 177
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.93 E-value=0.013 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.90 E-value=0.039 Score=50.12 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=32.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEecCCCCHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKE----HFELKIWIRVFEDFGERQ 236 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~ 236 (505)
-.++.|+|++|+|||||+..+........ .-..++|+.....++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~ 74 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 74 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH
Confidence 46899999999999999999876311111 124678887666555443
No 179
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.89 E-value=0.013 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.85 E-value=0.0098 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.84 E-value=0.077 Score=51.83 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=59.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceE-EEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKI-WIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
-.+++|+|+.|+|||||.+.+..- ......+.+ ++. ++... .+......-.+..-+.+...+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHHHH
Confidence 468999999999999999998762 222212333 222 11110 0000000000000001112234567
Q ss_pred HHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 269 RDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 269 ~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
...|...+=+|++|.+- +.+....+.... ..|..|+.|+...++..
T Consensus 203 ~~~L~~~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHTTSCCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHhhhCcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 77777777799999985 344444333333 24666888887766444
No 182
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.82 E-value=0.016 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 183
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.80 E-value=0.0086 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=16.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.80 E-value=0.021 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 185
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.79 E-value=0.017 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 186
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.78 E-value=0.013 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 187
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.78 E-value=0.015 Score=51.92 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.75 E-value=0.014 Score=49.91 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.74 E-value=0.016 Score=51.03 Aligned_cols=24 Identities=13% Similarity=0.451 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 190
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.73 E-value=0.018 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.72 E-value=0.02 Score=50.45 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 171 DREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-+..+..++..- ++...+.|+|++|+||||+|..+++
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 355666666431 3334689999999999999988877
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.72 E-value=0.014 Score=51.06 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.69 E-value=0.016 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 194
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.69 E-value=0.016 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 195
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.69 E-value=0.018 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999876
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.67 E-value=0.013 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 197
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.66 E-value=0.017 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 198
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.66 E-value=0.016 Score=51.99 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999976
No 199
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.64 E-value=0.017 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999875
No 200
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.63 E-value=0.02 Score=53.67 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHh
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~ 211 (505)
....+|+|.|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446799999999999999999987
No 201
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.62 E-value=0.037 Score=52.61 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999876
No 202
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.60 E-value=0.077 Score=53.01 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=27.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEecCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHF-ELKIWIRVFED 231 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~ 231 (505)
+.++|+|.+|+|||||+..+..+. ...+ +.++++.+.+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~--~~~~~~i~V~~~iGer 191 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI--AQEHGGISVFAGVGER 191 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH--HHHTCCCEEEEEESSC
T ss_pred CEEEEECCCCCCccHHHHHHHhhh--hhccCcEEEEeeeccC
Confidence 358899999999999999988742 2222 34556666554
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.60 E-value=0.027 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988763
No 204
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.58 E-value=0.01 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.55 E-value=0.13 Score=49.22 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=57.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
.+++|+|+.|+|||||++.+..- + ..-.+.+.+.-........ ..... ....+ ........+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~--------~~~~i--~~~~g---gg~~~r~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKH--------HKNYT--QLFFG---GNITSADCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSS--------CSSEE--EEECB---TTBCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeecccccc--------chhEE--EEEeC---CChhHHHHHHH
Confidence 57999999999999999999863 2 1223455543221111000 00000 00000 11224456777
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHH
Q 037039 271 CLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVA 318 (505)
Q Consensus 271 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va 318 (505)
.|..++=+|++|.+-. .+.++.+. .+..+ +.-+|+||...+..
T Consensus 236 aL~~~p~ilildE~~~--~e~~~~l~-~~~~g--~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 236 CLRMRPDRIILGELRS--SEAYDFYN-VLCSG--HKGTLTTLHAGSSE 278 (330)
T ss_dssp HTTSCCSEEEECCCCS--THHHHHHH-HHHTT--CCCEEEEEECSSHH
T ss_pred HhhhCCCEEEEcCCCh--HHHHHHHH-HHhcC--CCEEEEEEcccHHH
Confidence 7888888999999854 34555443 33332 22367776655443
No 206
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.55 E-value=0.17 Score=49.09 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 173 EKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 173 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-++++.|..- .+-+-++|+|.+|+|||+|+..+.+
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHH
Confidence 4556666543 2235688999999999999998887
No 207
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.55 E-value=0.019 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++.+||+|.|-||+||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4568999999999999998877654
No 208
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.50 E-value=0.021 Score=51.47 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=30.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcccccc---c-cCCceEEEEecCCCCH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVK---E-HFELKIWIRVFEDFGE 234 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~ 234 (505)
.-.+++|+|++|+|||||++.+....... . .-...+|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34699999999999999999987521111 1 1234677765444343
No 209
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.49 E-value=0.014 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 210
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.45 E-value=0.016 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 211
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.41 E-value=0.018 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 212
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.40 E-value=0.02 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 213
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.027 Score=50.47 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 168 RDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.++..+.+...+.. .+..+|.|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555432 35689999999999999999988763
No 214
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.39 E-value=0.019 Score=51.41 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.39 E-value=0.022 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.37 E-value=0.02 Score=50.59 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 217
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.37 E-value=0.028 Score=55.94 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=35.8
Q ss_pred CcccccchhHHHHHHHHhcC--------CCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQT--------SDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|.+..++.|...+... ........+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56899888888887666321 000012345688999999999999999987
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.35 E-value=0.021 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|++|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998873
No 219
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.34 E-value=0.093 Score=52.81 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=29.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCC
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFG 233 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 233 (505)
...+++|+|.+|+|||||++.+... .. ...+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 4579999999999999999998863 22 223455554344443
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.33 E-value=0.025 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 221
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.31 E-value=0.022 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.29 E-value=0.022 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999875
No 223
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.29 E-value=0.018 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998763
No 224
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.27 E-value=0.022 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999876
No 225
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.27 E-value=0.02 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.23 E-value=0.026 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347999999999999999999886
No 227
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.18 E-value=0.015 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=15.9
Q ss_pred eEEEEEecCCChHHHHHHHHh-c
Q 037039 191 SVVPIVGIGGLGKTAVAQLVY-N 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~-~ 212 (505)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 228
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.13 E-value=0.16 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36999999999999999999876
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.12 E-value=0.027 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++++|.+|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 230
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.038 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=21.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557889999999999999998764
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.01 E-value=0.032 Score=53.48 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4468999999999999999999886
No 232
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.99 E-value=0.022 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 233
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.98 E-value=0.027 Score=52.58 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=33.1
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHh
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~ 320 (505)
-.|...|-.++=+|+||.--.. |...-..+...+..- ..|..||++|.+.+.+..
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL 209 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH
Confidence 3456667778889999997432 444434444444321 226678888877655543
No 234
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.98 E-value=0.027 Score=51.32 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=32.4
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhc---CCCCCcEEEEecCChHHHH
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLL---GGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~---~~~~gs~iivTTR~~~va~ 319 (505)
|.+.|-.++=+|+||..-. .|...-..+...+. ....|..||++|.+...+.
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 4445555677889999753 25555555666663 2234677888888766543
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.96 E-value=0.028 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.95 E-value=0.026 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 237
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.95 E-value=0.027 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.87 E-value=0.096 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988876
No 239
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.86 E-value=0.029 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 240
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.84 E-value=0.022 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.84 E-value=0.03 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 242
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.82 E-value=0.029 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999976
No 243
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.33 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 5899999999999999999875
No 244
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.81 E-value=0.058 Score=52.41 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+.+.+... ..+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44455555432 24568999999999999999988865
No 245
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.79 E-value=0.03 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 246
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.78 E-value=0.031 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999875
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.76 E-value=0.089 Score=49.54 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|+|.+|+|||||++.+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.76 E-value=0.033 Score=48.01 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=21.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++.|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 249
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.75 E-value=0.035 Score=58.22 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=35.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 67899998888887777532 4788999999999999999987
No 250
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.74 E-value=0.029 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 251
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.74 E-value=0.034 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999876
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.73 E-value=0.027 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 253
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.73 E-value=0.034 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.72 E-value=0.036 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999886
No 255
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.72 E-value=0.033 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 256
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.69 E-value=0.033 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.64 E-value=0.034 Score=51.30 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=32.7
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
.|...|-.++=+|+||.--.. |...-..+...+... ..|..||++|.+.+.+..
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 455566777789999987432 444434444443321 236778889988766544
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.63 E-value=0.04 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.62 E-value=0.034 Score=51.62 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=33.0
Q ss_pred HHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC-CCCcEEEEecCChHHHHh
Q 037039 268 LRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG-ANGSKILVTTRSRKVASI 320 (505)
Q Consensus 268 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~~ 320 (505)
|...|-.++=+|+||.--. .|...-..+...+... ..|..||++|.+...+..
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 4445555677889998753 2445555555555442 347778888888766543
No 260
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.62 E-value=0.033 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 261
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.57 E-value=0.048 Score=47.64 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..-.|+|+|.+|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999998764
No 262
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.57 E-value=0.051 Score=46.09 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999998864
No 263
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.57 E-value=0.034 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.55 E-value=0.035 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|+|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999885
No 265
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.54 E-value=0.035 Score=51.66 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVAS 319 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~ 319 (505)
.|.+.|-.++=+|+||..-. .|...-..+...+... ..|..||++|.+...+.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 35556667777899998743 2444545555555432 23677888888877654
No 266
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.53 E-value=0.036 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999886
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.53 E-value=0.036 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 268
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.52 E-value=0.036 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.51 E-value=0.053 Score=49.31 Aligned_cols=39 Identities=28% Similarity=0.236 Sum_probs=27.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecC
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFE 230 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 230 (505)
-.++.|.|.+|+||||||.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 3589999999999999998876522 12223567776543
No 270
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.47 E-value=0.083 Score=51.14 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=31.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccC---C-ceEEEEecCCCC
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHF---E-LKIWIRVFEDFG 233 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~-~~~wv~v~~~~~ 233 (505)
+.-.++.|+|++|+|||||+..++......... . .++|+.....+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 345799999999999999999988632111111 2 347887655543
No 271
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.45 E-value=0.037 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|+|+.|+||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 272
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.43 E-value=0.038 Score=51.31 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=32.4
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC-CCCcEEEEecCChHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG-ANGSKILVTTRSRKVAS 319 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~va~ 319 (505)
.|...|-.++=+|+||.--.. |...-..+...+... ..|..||++|.+.+.+.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 455666777889999997532 444444444444331 12667888888765544
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.42 E-value=0.038 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999976
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.41 E-value=0.039 Score=50.82 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
.|...|-.++=+|+||.--. .|...-..+...+... ..|..||++|.+.+.+..+
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 195 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI 195 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 34555566777999999753 2444444444444321 2266789999887665443
No 275
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.41 E-value=0.049 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567889999999999999999874
No 276
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.37 E-value=0.043 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.134 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..-.+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999876
No 277
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.35 E-value=0.36 Score=52.88 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=34.2
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
.|...|-.++=+|+||.--+ .|...-..+...+.. .|..||++|.+......+
T Consensus 558 aLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 34555556777999999643 244455555555555 466788888887666543
No 278
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.32 E-value=0.046 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++|.|.|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 6899999999999999999876
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.31 E-value=0.11 Score=49.60 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=34.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMEL 244 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~ 244 (505)
-.++.|.|.+|+||||||..++.+..... ..++|++.. .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36888999999999999998875322222 466777654 4556666555543
No 280
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.25 E-value=0.27 Score=53.79 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCceEEEEEecCCCC-ChhhHHHH----HHhhcCCCCCcEEEEecCChHHHHhh
Q 037039 273 NGKRYLLVMDDVWNE-DPEAWRNL----KSLLLGGANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 273 ~~kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~iivTTR~~~va~~~ 321 (505)
..++-|++||..-.. +...-..+ ...+.. ..|+.+|++|...+++..+
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 466789999998532 33222222 223322 2478999999998877654
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.25 E-value=0.046 Score=50.55 Aligned_cols=113 Identities=12% Similarity=0.191 Sum_probs=58.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
-.+++|+|+.|+|||||.+.+..- ....+.+.+++.- .+... +.... ..+ . .. ..-+.+...+...+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g-~~i~~--~~~~~-~~~---v-~q--~~~gl~~~~l~~~la 92 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE-DPIEY--VFKHK-KSI---V-NQ--REVGEDTKSFADALR 92 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEE-SSCCS--CCCCS-SSE---E-EE--EEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcC-Cccee--ecCCc-cee---e-eH--HHhCCCHHHHHHHHH
Confidence 368999999999999999998762 2222234443321 11000 00000 000 0 00 000011122445566
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChHHHH
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~va~ 319 (505)
..|..++=+|++|..- +.+....+.... ..|.-|++||...++..
T Consensus 93 ~aL~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 93 AALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 6665567788899985 444444433332 24667888888776543
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.23 E-value=0.043 Score=51.85 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 36899999999999999999876
No 283
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.21 E-value=0.046 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999876
No 284
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.21 E-value=0.042 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 285
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.21 E-value=0.043 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++.|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999998875
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.17 E-value=0.049 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 287
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.17 E-value=0.02 Score=53.99 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=18.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.16 E-value=0.05 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++|.|.|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999976
No 289
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.15 E-value=0.069 Score=46.13 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|+++|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 290
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.09 E-value=0.26 Score=49.10 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCC
Q 037039 174 KIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDF 232 (505)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 232 (505)
++++.|..- .+-+-++|+|.+|+|||+|+..+.++. .+.+-+.++++-+.+..
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~ 194 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERT 194 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcc
Confidence 455666532 223578899999999999999988732 12233556777777653
No 291
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.97 E-value=0.043 Score=56.92 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999988876
No 292
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.94 E-value=0.054 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999885
No 293
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.85 E-value=0.044 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999999875
No 294
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.83 E-value=1.9 Score=38.83 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=54.6
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhc-cc--cCC-----C--CCch
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTN-YV--FQG-----D--LNTH 262 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~-~~--~~~-----~--~~~~ 262 (505)
+.|+|+.|.|||.+|..+.... . ..++++. ....+..++.+.+.. .... .. ... + ....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-----P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~ 179 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-----PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTY 179 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-----SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-----CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeH
Confidence 6789999999999998776521 1 2234432 222444555554432 1100 00 000 0 0111
Q ss_pred H-HHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEec
Q 037039 263 R-LQQILRDCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTT 312 (505)
Q Consensus 263 ~-l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT 312 (505)
+ +.... ..+.++--+||+|.+.......+..+...++ ...++.+|.
T Consensus 180 ~~l~~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 180 DSAYVNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHHTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHHhhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 2 22222 2334445699999998766667777766554 233455553
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.83 E-value=0.38 Score=46.01 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=35.1
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELI 245 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 245 (505)
.++.|.|.+|+||||||..++.+... +=..++|++. .-+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 58889999999999999998764322 1134566554 456667777665543
No 296
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.79 E-value=0.25 Score=49.54 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=34.5
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH-HHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER-QIMRKI 241 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~~~~~i 241 (505)
+-++|+|.+|+|||+|+..+.++. .+.+-+.++++-+.+....- ++..++
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~ 216 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEM 216 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhh
Confidence 468899999999999999888732 12344677888887765432 333343
No 297
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.77 E-value=0.056 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446899999999999999999986
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.77 E-value=0.061 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 299
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.72 E-value=0.081 Score=52.44 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=27.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCC----ceEEEEecCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFE----LKIWIRVFED 231 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~v~~~ 231 (505)
+-++|.|.+|+|||+|+..+.+.... +-+ .++++-+.+.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR 194 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGIT 194 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEEC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCC
Confidence 34679999999999999999884332 222 5566666654
No 300
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.72 E-value=0.066 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 301
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.70 E-value=0.06 Score=50.60 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhh-cCCCCCcEEEEecCChHHHH
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLL-LGGANGSKILVTTRSRKVAS 319 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l-~~~~~gs~iivTTR~~~va~ 319 (505)
.|.+.|-.++=+|+||.--. .|...-..+...+ .....|..||++|.+...+.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 34455556777889999753 2555555565543 23334677999998877654
No 302
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.69 E-value=0.07 Score=53.19 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 303
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.69 E-value=0.062 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|.|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 304
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.66 E-value=0.056 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+.++++|+|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999985
No 305
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.64 E-value=0.064 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...|.|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999986
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.60 E-value=0.081 Score=45.15 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+...|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999998764
No 307
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.60 E-value=0.066 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 308
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.58 E-value=0.15 Score=46.05 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=16.9
Q ss_pred eEEEEEecCCChHHHHHHHHh
Q 037039 191 SVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~ 211 (505)
+.+.|.|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478899999999998665543
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.58 E-value=0.069 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998864
No 310
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.58 E-value=0.063 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|.|.|++|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999998763
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.54 E-value=0.07 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+++|.++|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988875
No 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.51 E-value=0.13 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=20.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+|.|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999988874
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.49 E-value=0.063 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 314
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.46 E-value=0.067 Score=51.74 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=34.6
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC--CCCCcEEEEecCChHHHHhhc
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG--GANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~va~~~~ 322 (505)
-.|.+.|-.++=+|+||.--+. |...-..+...+.. ...|..||++|.+...+..++
T Consensus 147 ValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA 206 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHC
Confidence 3466667778889999997432 43333333332221 124677999999887665543
No 315
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.42 E-value=0.071 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4568899999999999999988775
No 316
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.37 E-value=0.11 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.37 E-value=0.08 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 318
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.35 E-value=0.12 Score=47.60 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhc
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+..+|... .++...|.++|++|+|||.+|..+.+
T Consensus 90 ~~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34455666432 13345689999999999999999987
No 319
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.34 E-value=0.096 Score=45.52 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999864
No 320
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.34 E-value=0.082 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3456999999999999999999987
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.28 E-value=0.093 Score=44.32 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 322
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.23 E-value=0.097 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998764
No 323
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.21 E-value=0.073 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988753
No 324
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.21 E-value=0.078 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 325
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.16 E-value=0.21 Score=50.11 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=26.9
Q ss_pred eEEEEEecCCChHHHHH-HHHhccccccccCCc-eEEEEecCCC
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYNDQRVKEHFEL-KIWIRVFEDF 232 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~v~~~~ 232 (505)
+-++|+|.+|+|||+|| ..+.|.. .-+. ++++-+.+..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~ 215 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKK 215 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCc
Confidence 46789999999999996 5777732 2443 4667777653
No 326
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.14 E-value=0.1 Score=44.95 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999998874
No 327
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.11 E-value=0.18 Score=47.33 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
++++.+.|.............|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 345555554432222345668999999999999999999864
No 328
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.10 E-value=0.1 Score=61.09 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=51.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHH
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQI 267 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~ 267 (505)
...+++.|+|++|+|||+||.++... ...+=..++|+.+...++... ++.++..+.. .......+..+....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~-l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDN-LLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTT-CEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchh-ceeecCChHHHHHHH
Confidence 34578999999999999999998763 222223567777777666554 2333211100 001111122234444
Q ss_pred HHHHc-CCceEEEEEecCC
Q 037039 268 LRDCL-NGKRYLLVMDDVW 285 (505)
Q Consensus 268 l~~~L-~~kr~LlVlDdvw 285 (505)
+.... ..+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 44433 2567799999983
No 329
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.06 E-value=0.056 Score=50.02 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+...|.|.|..|+||||+|+.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988876
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.00 E-value=0.081 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998875
No 331
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.083 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34779999999999999998864
No 332
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.88 E-value=0.092 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999999876
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.82 E-value=0.075 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46779999999999999998764
No 334
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.81 E-value=0.083 Score=51.48 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=33.5
Q ss_pred HHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 267 ILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
.|.+.|-.++=+|+||.--. .|...-..+...+..- ..|..||++|.+...+..++
T Consensus 143 aiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~a 201 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA 201 (381)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC
Confidence 34555556677899998643 2444444444444331 23667888888877665543
No 335
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.81 E-value=0.22 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-..|.|-|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368899999999999999999873
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.79 E-value=0.11 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...|.|+|.+|+|||||...+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999998875
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.79 E-value=0.13 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567889999999999999998764
No 338
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.79 E-value=0.084 Score=46.96 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.....|.|+|.+|+|||||...+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998764
No 339
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.75 E-value=0.65 Score=45.13 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=33.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..++|....+.++...+..-. ... ..+.|.|.+|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a---~~~-~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA---KSK-APVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH---TSC-SCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhh---ccc-hhheEEeCCCchHHHHHHHHHHh
Confidence 457888777777766554322 122 23569999999999999999863
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.74 E-value=0.086 Score=51.06 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=34.4
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
-.|.+.|-.++=+|+||.--+. |...-..+...+..- ..|..+|++|.+.+.+..++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a 201 (359)
T 2yyz_A 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA 201 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 3466667778889999997432 433333444443321 12567888898877665443
No 341
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.73 E-value=0.1 Score=45.10 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998874
No 342
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.73 E-value=0.067 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...|+|+|.+|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999888763
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.68 E-value=0.088 Score=51.05 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 266 QILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
-.|.+.|-.++=+|+||.--+ .|...-..+...+..- ..|..||++|.+...+..+
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 200 (362)
T 2it1_A 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAM 200 (362)
T ss_dssp HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 346667777888999998632 2333333344443321 1256788888887766544
No 344
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.67 E-value=0.12 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|+++|.+|+|||||...+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998763
No 345
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.67 E-value=0.12 Score=43.63 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 346
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.63 E-value=0.078 Score=51.14 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=34.7
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
-.|.+.|-.++=+|+||.--+. |...-..+...+..- ..|..||++|.+...+..+
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ 194 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM 194 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3466677778889999997432 443334444444321 2366788889887766544
No 347
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.63 E-value=0.06 Score=56.16 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-+.++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4789999999999999999873
No 348
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.63 E-value=0.72 Score=56.08 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=46.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
.+-+.++|.||+||++|++.+..= .+ + ..+=+.+++.++..+.-.++-.-+ .+
T Consensus 1609 ~G~~LLvGvgGsGkqSltrLaa~i---~~-~-~~fqi~~~~~Y~~~~f~eDLk~l~----------------------~~ 1661 (2695)
T 4akg_A 1609 QGHMMLIGASRTGKTILTRFVAWL---NG-L-KIVQPKIHRHSNLSDFDMILKKAI----------------------SD 1661 (2695)
T ss_dssp SEEEEEECTTTSCHHHHHHHHHHH---TT-C-EEECCCCCTTCCHHHHHHHHHHHH----------------------HH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHH---hC-C-eeEEEEeeCCCCHHHHHHHHHHHH----------------------HH
Confidence 356789999999999999888641 11 1 112245677777655433332211 11
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHh
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSL 298 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~ 298 (505)
...++++..++|+|-.-.+..-.+.+...
T Consensus 1662 aG~~~~~~vFL~tD~qi~~e~FLE~IN~l 1690 (2695)
T 4akg_A 1662 CSLKESRTCLIIDESNILETAFLERMNTL 1690 (2695)
T ss_dssp HHHSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred cCCCCCceEEEEeccccccHHHHHHHHHH
Confidence 12457777777777653333333444333
No 349
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.58 E-value=0.1 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 350
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.58 E-value=0.088 Score=44.38 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 351
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.56 E-value=0.084 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 352
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.53 E-value=0.093 Score=51.15 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=33.3
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 267 ILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 267 ~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
.|.+.|-.++=+|+||.--+. |...-..+...+..- ..|..||++|.+...+..++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 207 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG 207 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence 455666677789999986432 433333344433321 12567888888877665543
No 353
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.52 E-value=0.12 Score=43.24 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.-|.++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.49 E-value=0.087 Score=44.20 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 355
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.49 E-value=0.094 Score=51.04 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhh
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIM 321 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~ 321 (505)
-.|.+.|-.++=+|+||.--+. |...-..+...+..- ..|..||++|.+...+..+
T Consensus 150 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 208 (372)
T 1v43_A 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM 208 (372)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 3466667777889999997432 443334444444321 2256788889887766544
No 356
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.48 E-value=0.085 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.-.++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 357
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.48 E-value=0.12 Score=43.55 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 358
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.46 E-value=0.22 Score=44.67 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.....|.|.|+.|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 359
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.46 E-value=0.1 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.45 E-value=0.11 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999874
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.45 E-value=0.12 Score=44.22 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=21.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34566889999999999999888764
No 362
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.45 E-value=0.16 Score=50.67 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=28.7
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEecCCC
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHF--ELKIWIRVFEDF 232 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~ 232 (505)
+-++|.|.+|+|||+|+..+.++....+.- +.++++-+.+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~ 196 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN 196 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc
Confidence 456788999999999999998754332211 345666666543
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.43 E-value=0.09 Score=45.50 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=20.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999877654
No 364
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.39 E-value=0.19 Score=48.38 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568899999999999999998864
No 365
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.38 E-value=0.13 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 366
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.38 E-value=0.11 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788889999999999988875
No 367
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.36 E-value=0.13 Score=43.90 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34566789999999999999998864
No 368
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.35 E-value=0.078 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 369
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.35 E-value=0.95 Score=45.36 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=33.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIM 242 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 242 (505)
-.++.|.|.+|+||||||..++.+.... .=..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHH
Confidence 3588999999999999999988743221 11256676543 34455555554
No 370
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.31 E-value=0.073 Score=51.52 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 266 QILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
-.|.+.|-.++=+|+||.--+. |...-..+...+..- ..|..||++|.+.+.+..++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3466677778889999986432 433334444443321 12567888898877665543
No 371
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.29 E-value=0.1 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999875
No 372
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.28 E-value=0.62 Score=50.82 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCceEEEEEecCCCC-ChhhHHHH----HHhhcCCCCCcEEEEecCChHHHHhhc
Q 037039 273 NGKRYLLVMDDVWNE-DPEAWRNL----KSLLLGGANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 273 ~~kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~iivTTR~~~va~~~~ 322 (505)
..++-||+||..-.. +...-..+ ...+.. ..|+.+|++|.+.+++..+.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-~~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCCEEEEECSCGGGGGHHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-hcCCeEEEEeCcHHHHHHHh
Confidence 466789999998532 33222222 222221 35789999999988776543
No 373
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.27 E-value=0.14 Score=43.85 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999998853
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.26 E-value=0.13 Score=43.81 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34456889999999999999998753
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.22 E-value=0.096 Score=43.95 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.3
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037039 193 VPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~ 212 (505)
|.++|.+|+|||||...+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999875
No 376
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.17 E-value=0.1 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999874
No 377
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.17 E-value=0.13 Score=44.71 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhccc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
.....|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678899999999999999988753
No 378
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.17 E-value=0.14 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998864
No 379
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.16 E-value=0.1 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 380
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.15 E-value=0.12 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...-|.|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345788999999999999999854
No 381
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.12 E-value=0.16 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhcccc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQR 215 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~ 215 (505)
+-++|.|.+|+|||+|+..+.+...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3567999999999999999987543
No 382
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.11 E-value=0.16 Score=48.09 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHh
Q 037039 172 REKIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVY 211 (505)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 211 (505)
++++.+.+.. .+++++|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG---------FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH
Confidence 5566665531 478999999999999999987
No 383
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.05 E-value=0.12 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999875
No 384
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.03 E-value=0.15 Score=43.42 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....-|.|+|.+|+|||||...+.+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999998764
No 385
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.02 E-value=0.13 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+..-|.|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3466789999999999999998754
No 386
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.02 E-value=0.15 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988754
No 387
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.00 E-value=0.1 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..--|.|+|.+|+|||||.+.+.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999977764
No 388
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.99 E-value=0.13 Score=48.64 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+...|+|+|.+|+|||||...+...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34568999999999999999998864
No 389
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.99 E-value=0.15 Score=42.98 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.97 E-value=0.099 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 391
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.95 E-value=0.12 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.|+|.+|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998753
No 392
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.95 E-value=0.14 Score=45.94 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+...|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467889999999999999998874
No 393
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.91 E-value=0.14 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
++|+|.|-||+||||+|..+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHH
Confidence 6788899999999999988875
No 394
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.91 E-value=0.13 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=20.0
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346779999999999999877763
No 395
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.91 E-value=0.12 Score=43.45 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998753
No 396
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.87 E-value=0.11 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+-.++.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 346899999999999999999987
No 397
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.84 E-value=0.089 Score=57.00 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=37.5
Q ss_pred CcccccchhHHHHHHHHhcCCCC-------CCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 163 PDIIGRDKDREKIIELLMQTSDG-------KSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+++|.+..++.|.+.+...... +-.....+.++|++|+||||||+.+++.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 67889999888888776532110 0123456789999999999999999973
No 398
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.84 E-value=0.17 Score=43.38 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+..--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34456789999999999999998764
No 399
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.83 E-value=0.092 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..++.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988876
No 400
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.82 E-value=0.12 Score=46.34 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=53.9
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCC--CCchHHHHHHH
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGD--LNTHRLQQILR 269 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~--~~~~~l~~~l~ 269 (505)
.|.+.|.||+||||+|..+..... ..-++ +..+.+...-+.. ....+..+. ..........+ ....++...+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~--~~al~~gl~-~~~~~~~~~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAE--TEALLNGLP-QQPLLRTEYRGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHH--HHHHHTTSC-BCCCEEEEETTEEEEECCHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChh--HHHHhcCcc-ccCcceeecCCcccccccHHHHHh
Confidence 477899999999999888776321 22233 3333333222221 111122110 00000000000 01122333333
Q ss_pred HHcCCceEEEEEecCCCC------ChhhHHHHHHhhcCCCCCcEEEEecCCh
Q 037039 270 DCLNGKRYLLVMDDVWNE------DPEAWRNLKSLLLGGANGSKILVTTRSR 315 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~iivTTR~~ 315 (505)
.+.=++|+|++-.. ...-|..+...++. |..++.|+..+
T Consensus 83 ----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 83 ----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp ----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred ----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 24569999987421 23477777665553 45688777644
No 401
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.82 E-value=0.15 Score=43.08 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999998753
No 402
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.81 E-value=0.28 Score=42.25 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+..-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998854
No 403
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.76 E-value=0.092 Score=44.86 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999988764
No 404
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.72 E-value=0.28 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 405
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.72 E-value=0.16 Score=43.81 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.6
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34456789999999999999998864
No 406
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.71 E-value=0.23 Score=49.75 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=26.7
Q ss_pred eEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEecCCC
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYNDQRVKEHFE-LKIWIRVFEDF 232 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~ 232 (505)
+-++|+|.+|+|||+|| ..+.|.. +-+ .++++-+.+..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~ 202 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQ 202 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcc
Confidence 45789999999999995 5777632 234 34667776643
No 407
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.63 E-value=0.15 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346789999999999999888764
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.62 E-value=0.16 Score=43.45 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.++|.+|+|||||...+.++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999888753
No 409
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.61 E-value=0.16 Score=48.21 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 187 SETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 187 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999998764
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.58 E-value=0.13 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.56 E-value=0.13 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 412
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.54 E-value=0.16 Score=45.95 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567889999999999999998874
No 413
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.54 E-value=0.13 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 414
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.52 E-value=0.13 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999988863
No 415
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.52 E-value=0.19 Score=43.00 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 416
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.51 E-value=0.22 Score=50.03 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=26.8
Q ss_pred eEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEecCCC
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYNDQRVKEHFE-LKIWIRVFEDF 232 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~ 232 (505)
+-++|+|.+|+|||+|| ..+.|.. .-+ .++++-+.+..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~ 203 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKA 203 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCc
Confidence 45789999999999995 5777732 234 34677777653
No 417
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.50 E-value=0.14 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998864
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.49 E-value=0.13 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999888764
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.46 E-value=0.21 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999873
No 420
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.45 E-value=0.13 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999886
No 421
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.44 E-value=0.17 Score=44.23 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 422
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.44 E-value=0.16 Score=43.38 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999988764
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.43 E-value=0.17 Score=42.24 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+..|+|+.|.|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988753
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.13 Score=44.90 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.40 E-value=0.33 Score=43.18 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|.+-|+.|+||||+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 426
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.38 E-value=0.13 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 427
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.37 E-value=0.16 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999998764
No 428
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.37 E-value=0.19 Score=43.65 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999998764
No 429
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.36 E-value=0.18 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 430
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.36 E-value=0.15 Score=44.66 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.34 E-value=0.16 Score=43.65 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999998864
No 432
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.33 E-value=0.19 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|+++|.+|+|||||...+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 56889999999999999999874
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.28 E-value=0.14 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.3
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345789999999999999998763
No 434
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.27 E-value=0.26 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
-.+++|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 435
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.27 E-value=0.17 Score=43.31 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999998764
No 436
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.25 E-value=0.18 Score=43.32 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
+..-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998754
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.25 E-value=0.14 Score=45.31 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999998764
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.22 E-value=0.17 Score=44.34 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=21.3
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567889999999999999998764
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.22 E-value=0.19 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+...|+++|.+|+|||||...+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3456889999999999999998864
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.21 E-value=0.16 Score=45.13 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998864
No 441
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.21 E-value=0.29 Score=46.31 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.8
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999998764
No 442
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.20 E-value=1.9 Score=43.80 Aligned_cols=51 Identities=6% Similarity=-0.083 Sum_probs=33.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIME 243 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 243 (505)
-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHH
Confidence 3688899999999999999887632221 112567776543 45566555544
No 443
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.20 E-value=0.17 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46889999999999999998865
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.17 E-value=0.15 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346779999999999999998864
No 445
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.13 E-value=0.24 Score=42.92 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456889999999999999998864
No 446
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.13 E-value=0.37 Score=48.85 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCCCCceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHH
Q 037039 174 KIIELLMQTSDGKSETVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGER 235 (505)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 235 (505)
++++.|..- .+-+-++|.|..|+|||+|+..+.+. .+-+.++++-+.+..+.-
T Consensus 216 rvID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev 268 (588)
T 3mfy_A 216 RVIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEM 268 (588)
T ss_dssp HHHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHH
T ss_pred chhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHH
Confidence 345666532 22357889999999999999998763 223567788888766544
No 447
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.11 E-value=0.15 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|++|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999986
No 448
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.10 E-value=0.38 Score=42.20 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.|+|=|.-|+||||.++.+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999987
No 449
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.08 E-value=0.21 Score=42.54 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+..--|.++|.+|+|||||...+.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 33456789999999999999998764
No 450
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.06 E-value=0.12 Score=51.00 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998763
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.05 E-value=0.12 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 452
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.04 E-value=1.6 Score=49.96 Aligned_cols=117 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEE--------------------------------------EecCCCC
Q 037039 192 VVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWI--------------------------------------RVFEDFG 233 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--------------------------------------~v~~~~~ 233 (505)
.|+|||..|+|||||++.+. +.-+...+.+.+ ......+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLE---RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHT---TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred EEEEECCCCChHHHHHHHHh---cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Q ss_pred HHHHHHHH----HHHHHHhhhhcc-----ccCCCCCchH--HHHHHHHHcCCceEEEEEecCCCC-ChhhHHHHHHhhcC
Q 037039 234 ERQIMRKI----MELIIEQIMTNY-----VFQGDLNTHR--LQQILRDCLNGKRYLLVMDDVWNE-DPEAWRNLKSLLLG 301 (505)
Q Consensus 234 ~~~~~~~i----l~~l~~~~~~~~-----~~~~~~~~~~--l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~ 301 (505)
..++...+ +..+...+..+. ..+...+..+ +...-+..+++.+ +||||+.-+. |.+.=..+...+..
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~-ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK-ILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS-EEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC-EEEEeCccccCCHHHHHHHHHHHHH
Q ss_pred CCCCcEEEEec
Q 037039 302 GANGSKILVTT 312 (505)
Q Consensus 302 ~~~gs~iivTT 312 (505)
...|+.+|+.|
T Consensus 1263 ~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1263 AREGRTCIVIA 1273 (1321)
T ss_dssp TSSSSEEEEEC
T ss_pred HcCCCEEEEec
No 453
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.02 E-value=0.2 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988753
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.01 E-value=0.14 Score=44.41 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998864
No 455
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.01 E-value=0.15 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhccc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999988754
No 456
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.98 E-value=0.3 Score=56.61 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred eEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHHH
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILRD 270 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (505)
+++.|.|.+|+||||||.++.. .....=..++|++....++... ++.++.....-. .....+..++...+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~-i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL-CSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCE-EECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeE-EcCCCCHHHHHHHHHH
Q ss_pred Hc-CCceEEEEEecC
Q 037039 271 CL-NGKRYLLVMDDV 284 (505)
Q Consensus 271 ~L-~~kr~LlVlDdv 284 (505)
.. +.+.-+||+|.+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.98 E-value=0.18 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.2
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346779999999999999888754
No 458
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.94 E-value=0.16 Score=46.13 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=29.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRK 240 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 240 (505)
-.++.|.|.+|+|||+||.+++.+. ....-..+++++.. .+...+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHH
Confidence 3688899999999999998865421 12222345565543 344444433
No 459
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.91 E-value=0.14 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.90 E-value=0.21 Score=43.08 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 461
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.87 E-value=0.28 Score=50.70 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCChHHHHHHHHhc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+...+|.|.|++|+||||+|+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHH
Confidence 3457899999999999999999976
No 462
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.87 E-value=0.26 Score=43.63 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=51.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHHH
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQILR 269 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l~ 269 (505)
-.+..++|..|.||||.+.....+... ......+ +.... +.+.....+...++...... ..+.. ..+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~-----~~~~~---~~~~ 95 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAV-----PVSAS---KDIF 95 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEE-EECC-------------------CCEE-----ECSSG---GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEecc--CCcchHHHHHhhcCCeeEEe-----ecCCH---HHHH
Confidence 368889999999999988776653222 2222223 32211 11111223333332211100 01111 1122
Q ss_pred HHcCCceEEEEEecCCCCChhhHHHHHHhhcCCCCCcEEEEecCChH
Q 037039 270 DCLNGKRYLLVMDDVWNEDPEAWRNLKSLLLGGANGSKILVTTRSRK 316 (505)
Q Consensus 270 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 316 (505)
+.+.++--+|++|.+.-.+.+..+.+....+ .|-.||+|-++.+
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 3333333499999986544455544444333 2668999988543
No 463
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.85 E-value=0.2 Score=50.89 Aligned_cols=26 Identities=0% Similarity=-0.060 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+..+|.+.|++|+||||+|+.+...
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.82 E-value=0.22 Score=44.25 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.9
Q ss_pred eeEEEEEecCCChHHHHHHHHhc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999988874
No 465
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.80 E-value=0.64 Score=46.53 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=27.3
Q ss_pred eEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEecCCCC
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYNDQRVKEHFE-LKIWIRVFEDFG 233 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~ 233 (505)
+-++|.|..|+|||+|| ..+.|. .+-+ .++++-+.+..+
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ 203 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKAS 203 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChH
Confidence 45789999999999996 567662 2234 356777776543
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.78 E-value=0.16 Score=44.57 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+...-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34456889999999999999998764
No 467
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.75 E-value=0.21 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356789999999999999998763
No 468
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.71 E-value=0.15 Score=45.38 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQ 214 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 214 (505)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999998754
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.16 Score=43.96 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.7
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999998764
No 470
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.63 E-value=0.39 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+...|+|+|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998864
No 471
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.62 E-value=0.21 Score=43.17 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998753
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.60 E-value=0.3 Score=57.38 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=51.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCCHHHHHHHHHHHHHHhhhhccccCCCCCchHHHHHH
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFGERQIMRKIMELIIEQIMTNYVFQGDLNTHRLQQIL 268 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~~l 268 (505)
.-.++.|+|++|+||||||.++.... ...=..++|++....++... .+.++.... ........+..++...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~-~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDID-NLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTT-TCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHH-HeEEeCCCCHHHHHHHH
Confidence 44699999999999999999988732 22223678888777666431 233321110 00001112223344444
Q ss_pred HHHc-CCceEEEEEecCC
Q 037039 269 RDCL-NGKRYLLVMDDVW 285 (505)
Q Consensus 269 ~~~L-~~kr~LlVlDdvw 285 (505)
.... +.+.-+||+|.+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 4333 2456699999985
No 473
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.59 E-value=0.22 Score=43.28 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998875
No 474
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.59 E-value=0.17 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 475
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.55 E-value=0.16 Score=50.63 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-.+++|+|..|+|||||.+.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999873
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.54 E-value=0.18 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998864
No 477
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.54 E-value=0.19 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCChHHHHHHHHhc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
+..+|.|.|++|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 478
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.52 E-value=0.4 Score=44.32 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|.++|.+|+|||||...+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999998864
No 479
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.51 E-value=0.38 Score=48.09 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHHhcCCCC-----CCCceeEEEEEecCCChHHHHHHHHhcc
Q 037039 166 IGRDKDREKIIELLMQTSDG-----KSETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.|.++-.+.|.+.+...... .......|+|+|.+|+|||||...+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 45566677777766532100 0234567899999999999999999874
No 480
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.50 E-value=0.36 Score=48.52 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=27.9
Q ss_pred eEEEEEecCCChHHHHH-HHHhccccc----cccCC-ceEEEEecCCCC
Q 037039 191 SVVPIVGIGGLGKTAVA-QLVYNDQRV----KEHFE-LKIWIRVFEDFG 233 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~v~~~~~ 233 (505)
+-++|+|.+|+|||+|| ..+.|.... .++-+ .++++-+.+..+
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~ 211 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS 211 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH
Confidence 45789999999999995 566663221 01234 356777776543
No 481
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.49 E-value=0.23 Score=42.96 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999998764
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.49 E-value=0.17 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||++.++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 483
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.43 E-value=0.23 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999998764
No 484
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.40 E-value=0.24 Score=42.96 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.1
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998864
No 485
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.38 E-value=0.17 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037039 193 VPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~ 213 (505)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999864
No 486
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.33 E-value=0.17 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.7
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037039 192 VVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 192 vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4679999999999999887653
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.31 E-value=0.25 Score=42.14 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.3
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.-+.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999988865
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.26 E-value=0.2 Score=43.71 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.23 E-value=0.19 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999998875
No 490
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.22 E-value=0.19 Score=44.00 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..-|.|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988764
No 491
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.21 E-value=0.18 Score=51.76 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=65.4
Q ss_pred eEEEEEecCCChHHHHHHHHhccccc-ccc--CC-ceEEEEecC----CCCHHHHHHHH----------HHHHHHhhhhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYNDQRV-KEH--FE-LKIWIRVFE----DFGERQIMRKI----------MELIIEQIMTN 252 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~v~~----~~~~~~~~~~i----------l~~l~~~~~~~ 252 (505)
.+++|+|+.|+|||||++.++.-... ... +. .+.++.-.. ..+..+.+... +..+.....-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 58999999999999999999873211 111 11 223332111 12233322211 00000000000
Q ss_pred cccC---CCCCchH-HHHHHHHHcCCceEEEEEecCCC-CChhhHHHHHHhhcCC--CCCcEEEEecCChHHHHhhc
Q 037039 253 YVFQ---GDLNTHR-LQQILRDCLNGKRYLLVMDDVWN-EDPEAWRNLKSLLLGG--ANGSKILVTTRSRKVASIMG 322 (505)
Q Consensus 253 ~~~~---~~~~~~~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~va~~~~ 322 (505)
.... ...+..+ ..-.|...|..++=+|+||.--+ .|...-..+...+... ..|..||++|.+...+..++
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 0000 0112222 23345566777888999998743 2444444444444431 23556888888877665543
No 492
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.21 E-value=0.2 Score=43.22 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=24.3
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEecCCCC
Q 037039 193 VPIVGIGGLGKTAVAQLVYNDQRVKEHFELKIWIRVFEDFG 233 (505)
Q Consensus 193 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 233 (505)
+.|+|.+|+||||+|.++... -..++++.-...++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~------~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD------APQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS------CSSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc------CCCeEEEecCCCCC
Confidence 679999999999999998863 12355555544443
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.15 E-value=0.25 Score=43.26 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
+..--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 33456889999999999999998764
No 494
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.09 E-value=0.19 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 495
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.95 E-value=0.19 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 496
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.94 E-value=0.29 Score=43.22 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhcc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..|+|=|.-|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999998873
No 497
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.93 E-value=0.24 Score=46.76 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCChHHHHHHHHhcc
Q 037039 188 ETVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 188 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.+...|+|+|.+|+|||||...+...
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999998864
No 498
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.92 E-value=0.25 Score=42.64 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.5
Q ss_pred eeEEEEEecCCChHHHHHHHHhcc
Q 037039 190 VSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 190 ~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
.--|.|+|.+|+|||||...+..+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998654
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.91 E-value=0.21 Score=44.20 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCChHHHHHHHHhcc
Q 037039 189 TVSVVPIVGIGGLGKTAVAQLVYND 213 (505)
Q Consensus 189 ~~~vi~I~G~gGiGKTtLA~~v~~~ 213 (505)
..--|.|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998864
No 500
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.87 E-value=0.13 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhc
Q 037039 191 SVVPIVGIGGLGKTAVAQLVYN 212 (505)
Q Consensus 191 ~vi~I~G~gGiGKTtLA~~v~~ 212 (505)
.+++|+|++|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4889999999999999999876
Done!