Query 037045
Match_columns 424
No_of_seqs 196 out of 4200
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-59 3.1E-64 478.8 29.3 410 2-423 180-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-42 2.7E-47 372.3 35.1 380 1-398 207-722 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.5E-43 1.4E-47 322.7 17.3 257 1-258 19-286 (287)
4 KOG0617 Ras suppressor protein 99.5 1.3E-16 2.7E-21 127.8 -3.9 145 263-423 33-180 (264)
5 KOG0617 Ras suppressor protein 99.5 3.8E-16 8.3E-21 125.0 -2.7 132 276-423 24-157 (264)
6 PLN00113 leucine-rich repeat r 99.4 4.1E-13 9E-18 144.4 11.9 160 263-424 118-292 (968)
7 TIGR03015 pepcterm_ATPase puta 99.4 4.8E-11 1E-15 109.0 20.9 174 2-178 44-242 (269)
8 PLN00113 leucine-rich repeat r 99.4 1.4E-12 3E-17 140.3 10.8 148 263-424 164-316 (968)
9 PF05729 NACHT: NACHT domain 99.4 8.4E-12 1.8E-16 105.1 12.8 137 2-143 1-163 (166)
10 PRK04841 transcriptional regul 99.3 7.9E-11 1.7E-15 126.1 20.1 214 2-234 33-278 (903)
11 KOG0444 Cytoskeletal regulator 99.3 3.5E-13 7.5E-18 128.3 1.8 129 263-393 103-258 (1255)
12 PRK00411 cdc6 cell division co 99.3 7.8E-10 1.7E-14 106.8 20.7 218 3-233 57-308 (394)
13 KOG0444 Cytoskeletal regulator 99.2 4.6E-13 1E-17 127.4 -2.6 145 263-423 222-369 (1255)
14 PF14580 LRR_9: Leucine-rich r 99.2 9.3E-12 2E-16 103.9 5.1 120 264-387 20-147 (175)
15 COG2909 MalT ATP-dependent tra 99.2 1.9E-09 4.2E-14 107.1 18.4 216 2-235 38-285 (894)
16 KOG4194 Membrane glycoprotein 99.2 2.7E-11 5.8E-16 114.8 4.9 128 263-392 102-233 (873)
17 KOG4194 Membrane glycoprotein 99.1 2.1E-11 4.6E-16 115.4 2.3 127 263-391 149-280 (873)
18 COG2256 MGS1 ATPase related to 99.1 7.3E-09 1.6E-13 94.8 18.0 198 3-223 50-267 (436)
19 KOG0472 Leucine-rich repeat pr 99.1 2.1E-11 4.6E-16 110.5 1.2 128 263-393 388-541 (565)
20 PF14580 LRR_9: Leucine-rich r 99.1 2.2E-10 4.8E-15 95.6 6.7 139 270-422 4-146 (175)
21 KOG0472 Leucine-rich repeat pr 99.1 1.8E-11 3.9E-16 111.0 -0.5 147 263-424 362-536 (565)
22 PF01637 Arch_ATPase: Archaeal 99.0 3.7E-09 8E-14 94.2 12.6 169 2-173 21-233 (234)
23 TIGR02928 orc1/cdc6 family rep 99.0 6.3E-08 1.4E-12 92.6 21.5 231 3-246 42-315 (365)
24 PF13173 AAA_14: AAA domain 99.0 3.2E-09 7E-14 85.1 8.8 114 2-134 3-126 (128)
25 KOG0618 Serine/threonine phosp 99.0 8.3E-11 1.8E-15 117.0 -0.6 125 263-391 359-487 (1081)
26 PRK00080 ruvB Holliday junctio 99.0 2.9E-08 6.4E-13 93.1 16.2 213 2-236 52-275 (328)
27 KOG0618 Serine/threonine phosp 98.9 8.6E-11 1.9E-15 116.9 -1.5 146 263-424 310-484 (1081)
28 PF13401 AAA_22: AAA domain; P 98.9 2.7E-09 5.7E-14 86.0 6.8 113 2-114 5-125 (131)
29 TIGR00635 ruvB Holliday juncti 98.9 4.5E-08 9.8E-13 91.1 15.9 162 3-176 32-203 (305)
30 PRK06893 DNA replication initi 98.9 1.9E-08 4.1E-13 89.1 12.2 148 3-178 41-207 (229)
31 KOG0532 Leucine-rich repeat (L 98.9 3.1E-10 6.8E-15 107.4 0.2 127 263-393 121-247 (722)
32 KOG0532 Leucine-rich repeat (L 98.8 1.7E-10 3.8E-15 109.1 -2.9 142 264-423 99-241 (722)
33 KOG1259 Nischarin, modulator o 98.8 3.3E-10 7.2E-15 99.2 -1.1 151 239-394 256-413 (490)
34 PRK15370 E3 ubiquitin-protein 98.8 1.1E-08 2.3E-13 104.7 8.6 102 263-374 199-300 (754)
35 KOG2028 ATPase related to the 98.8 9.6E-07 2.1E-11 79.9 19.7 150 2-169 163-331 (554)
36 PRK15387 E3 ubiquitin-protein 98.8 9.4E-09 2E-13 104.7 7.1 79 309-395 382-460 (788)
37 PLN03210 Resistant to P. syrin 98.8 3.7E-08 8.1E-13 107.2 11.2 88 310-398 779-887 (1153)
38 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.5E-14 95.9 -0.3 123 285-423 284-406 (490)
39 TIGR03420 DnaA_homol_Hda DnaA 98.8 9.6E-08 2.1E-12 84.8 11.9 148 2-177 39-204 (226)
40 PRK15370 E3 ubiquitin-protein 98.7 1E-08 2.2E-13 104.9 5.5 119 263-393 262-380 (754)
41 COG4886 Leucine-rich repeat (L 98.7 5.7E-09 1.2E-13 100.9 3.4 144 264-424 141-285 (394)
42 PRK14087 dnaA chromosomal repl 98.7 9.3E-07 2E-11 85.9 18.4 201 3-217 143-370 (450)
43 PRK13342 recombination factor 98.7 1.6E-06 3.5E-11 83.9 19.9 151 3-177 38-199 (413)
44 PRK15387 E3 ubiquitin-protein 98.7 2.5E-08 5.5E-13 101.6 7.6 142 263-424 302-453 (788)
45 COG3903 Predicted ATPase [Gene 98.7 5.9E-08 1.3E-12 89.5 8.2 235 2-241 15-259 (414)
46 PRK08084 DNA replication initi 98.6 5.4E-07 1.2E-11 80.1 13.1 149 2-178 46-213 (235)
47 PF00308 Bac_DnaA: Bacterial d 98.6 6.3E-07 1.4E-11 78.6 13.2 159 2-177 35-211 (219)
48 PF14516 AAA_35: AAA-like doma 98.6 1.5E-05 3.2E-10 74.7 23.1 172 2-181 32-246 (331)
49 PLN03150 hypothetical protein; 98.6 1.3E-07 2.8E-12 96.1 10.0 110 287-398 420-533 (623)
50 PF05496 RuvB_N: Holliday junc 98.6 1.6E-07 3.5E-12 80.4 8.8 147 3-178 52-225 (233)
51 PRK08727 hypothetical protein; 98.6 6.2E-07 1.3E-11 79.6 13.0 141 3-171 43-201 (233)
52 PRK07003 DNA polymerase III su 98.6 3.7E-06 8E-11 84.4 19.2 154 3-178 40-225 (830)
53 cd00116 LRR_RI Leucine-rich re 98.6 5.1E-08 1.1E-12 91.3 5.6 148 263-424 81-258 (319)
54 cd01128 rho_factor Transcripti 98.6 1.1E-07 2.5E-12 84.5 7.5 89 2-91 17-115 (249)
55 KOG3207 Beta-tubulin folding c 98.6 6.4E-09 1.4E-13 95.7 -0.6 148 263-423 172-333 (505)
56 PRK09087 hypothetical protein; 98.6 5.8E-07 1.3E-11 79.2 11.8 137 3-176 46-197 (226)
57 PTZ00112 origin recognition co 98.6 4.9E-06 1.1E-10 84.3 19.2 142 3-145 783-951 (1164)
58 KOG3207 Beta-tubulin folding c 98.6 2.2E-08 4.8E-13 92.2 2.4 125 263-392 197-338 (505)
59 PRK05642 DNA replication initi 98.6 1.1E-06 2.3E-11 78.2 12.7 148 3-178 47-212 (234)
60 COG4886 Leucine-rich repeat (L 98.6 5E-08 1.1E-12 94.3 4.4 146 263-424 116-263 (394)
61 PRK04195 replication factor C 98.5 6.2E-06 1.4E-10 81.5 18.7 157 2-179 40-207 (482)
62 cd00116 LRR_RI Leucine-rich re 98.5 5.4E-08 1.2E-12 91.2 4.0 152 263-424 108-286 (319)
63 KOG4237 Extracellular matrix p 98.5 1.6E-08 3.4E-13 92.1 0.2 127 263-391 67-199 (498)
64 PRK14961 DNA polymerase III su 98.5 4.8E-06 1E-10 79.1 16.8 93 78-172 118-218 (363)
65 COG1474 CDC6 Cdc6-related prot 98.5 8.9E-06 1.9E-10 76.7 17.8 142 4-146 45-206 (366)
66 PF05621 TniB: Bacterial TniB 98.5 2.9E-06 6.3E-11 76.2 13.8 168 1-168 61-255 (302)
67 TIGR00678 holB DNA polymerase 98.4 8.9E-06 1.9E-10 69.9 14.9 143 2-169 15-186 (188)
68 PLN03150 hypothetical protein; 98.4 5.2E-07 1.1E-11 91.7 8.4 86 311-398 420-508 (623)
69 PRK08903 DnaA regulatory inact 98.4 3.1E-06 6.8E-11 75.1 12.3 145 2-178 43-203 (227)
70 TIGR00362 DnaA chromosomal rep 98.4 1.2E-05 2.6E-10 77.8 17.2 196 3-216 138-358 (405)
71 PRK14949 DNA polymerase III su 98.4 8.2E-06 1.8E-10 83.5 16.4 154 3-174 40-220 (944)
72 PRK12402 replication factor C 98.4 6.3E-06 1.4E-10 77.8 14.7 171 2-175 37-227 (337)
73 PRK00440 rfc replication facto 98.4 3.7E-05 7.9E-10 72.0 19.6 153 2-172 39-201 (319)
74 PRK14088 dnaA chromosomal repl 98.4 6.3E-06 1.4E-10 80.1 14.5 175 3-194 132-332 (440)
75 PRK14960 DNA polymerase III su 98.4 2.9E-05 6.2E-10 77.2 18.9 152 3-172 39-217 (702)
76 PRK06645 DNA polymerase III su 98.4 1.9E-05 4.1E-10 77.5 17.5 92 78-171 127-226 (507)
77 PRK09376 rho transcription ter 98.4 1.1E-06 2.3E-11 81.9 8.3 88 3-91 171-268 (416)
78 PRK14963 DNA polymerase III su 98.4 1.6E-05 3.5E-10 78.2 17.0 159 3-172 38-215 (504)
79 PRK00149 dnaA chromosomal repl 98.4 1.5E-05 3.2E-10 78.2 16.8 196 3-216 150-370 (450)
80 PLN03025 replication factor C 98.4 8.4E-06 1.8E-10 76.2 14.3 154 3-172 36-198 (319)
81 KOG4237 Extracellular matrix p 98.4 3.3E-08 7.1E-13 90.0 -1.8 123 267-392 50-176 (498)
82 PRK14086 dnaA chromosomal repl 98.4 2.5E-05 5.3E-10 77.5 17.7 197 3-216 316-537 (617)
83 KOG4658 Apoptotic ATPase [Sign 98.3 5.1E-07 1.1E-11 94.1 5.7 130 279-423 517-649 (889)
84 PRK12422 chromosomal replicati 98.3 4.8E-05 1E-09 73.9 18.6 147 3-168 143-307 (445)
85 cd00009 AAA The AAA+ (ATPases 98.3 5E-06 1.1E-10 67.9 10.1 102 2-116 20-131 (151)
86 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 61.6 3.7 57 333-391 2-60 (61)
87 PRK12323 DNA polymerase III su 98.3 1.8E-05 3.8E-10 78.5 15.3 94 78-173 123-224 (700)
88 PRK14956 DNA polymerase III su 98.3 1.3E-05 2.9E-10 77.1 13.9 160 3-171 42-219 (484)
89 PRK13341 recombination factor 98.3 1.1E-05 2.3E-10 82.6 13.9 146 3-172 54-215 (725)
90 COG3267 ExeA Type II secretory 98.3 4.6E-05 9.9E-10 66.2 15.6 171 2-176 52-247 (269)
91 PF13855 LRR_8: Leucine rich r 98.3 3.7E-07 8.1E-12 62.5 2.4 54 286-339 2-56 (61)
92 PRK14957 DNA polymerase III su 98.3 3.3E-05 7.1E-10 76.3 16.6 154 3-175 40-222 (546)
93 TIGR01242 26Sp45 26S proteasom 98.3 8.4E-06 1.8E-10 77.7 12.2 143 3-168 158-328 (364)
94 PRK06620 hypothetical protein; 98.3 8.9E-06 1.9E-10 71.0 11.3 135 2-175 45-190 (214)
95 KOG2543 Origin recognition com 98.3 1.8E-05 4E-10 72.3 13.3 137 2-143 31-193 (438)
96 PRK14964 DNA polymerase III su 98.2 4.3E-05 9.3E-10 74.4 16.0 152 3-172 37-215 (491)
97 PRK14962 DNA polymerase III su 98.2 5.5E-05 1.2E-09 73.9 16.5 158 3-178 38-223 (472)
98 TIGR00767 rho transcription te 98.2 3.9E-06 8.4E-11 78.6 8.2 88 3-91 170-267 (415)
99 PRK05564 DNA polymerase III su 98.2 5.7E-05 1.2E-09 70.4 15.9 148 3-172 28-188 (313)
100 COG0593 DnaA ATPase involved i 98.2 5.1E-05 1.1E-09 71.6 15.4 194 2-217 114-334 (408)
101 PRK08691 DNA polymerase III su 98.2 3.8E-05 8.1E-10 77.0 14.9 95 78-174 118-220 (709)
102 PRK03992 proteasome-activating 98.2 3E-05 6.6E-10 74.3 13.5 144 3-168 167-337 (389)
103 PRK07994 DNA polymerase III su 98.2 6.1E-05 1.3E-09 75.7 16.0 160 4-172 41-218 (647)
104 TIGR02397 dnaX_nterm DNA polym 98.2 0.00012 2.6E-09 69.6 17.3 154 3-175 38-219 (355)
105 PRK14969 DNA polymerase III su 98.2 6.2E-05 1.4E-09 74.8 15.6 154 3-174 40-221 (527)
106 PRK07940 DNA polymerase III su 98.2 7.4E-05 1.6E-09 71.2 15.4 86 78-170 116-209 (394)
107 COG3899 Predicted ATPase [Gene 98.1 5.8E-05 1.3E-09 79.2 15.3 111 120-238 209-325 (849)
108 PRK14955 DNA polymerase III su 98.1 4.7E-05 1E-09 73.3 13.6 168 4-174 41-228 (397)
109 TIGR02881 spore_V_K stage V sp 98.1 2.1E-05 4.6E-10 71.2 10.6 127 3-145 44-193 (261)
110 PRK14951 DNA polymerase III su 98.1 0.00012 2.6E-09 73.4 16.6 93 79-173 124-224 (618)
111 PRK14959 DNA polymerase III su 98.1 0.0001 2.2E-09 73.5 15.9 166 3-178 40-225 (624)
112 PRK14958 DNA polymerase III su 98.1 9.3E-05 2E-09 73.1 15.5 152 3-172 40-218 (509)
113 KOG1859 Leucine-rich repeat pr 98.1 1.4E-07 3E-12 92.3 -4.6 121 266-392 167-291 (1096)
114 PRK08118 topology modulation p 98.1 1.1E-05 2.4E-10 67.6 7.1 37 1-37 1-38 (167)
115 PRK09112 DNA polymerase III su 98.1 0.0001 2.2E-09 69.3 14.2 162 3-172 47-238 (351)
116 PRK09111 DNA polymerase III su 98.1 0.00017 3.6E-09 72.5 16.3 166 3-175 48-234 (598)
117 PTZ00202 tuzin; Provisional 98.1 0.00027 5.8E-09 66.8 16.4 132 2-143 287-434 (550)
118 PRK14970 DNA polymerase III su 98.1 0.00026 5.6E-09 67.7 16.9 152 3-172 41-207 (367)
119 smart00382 AAA ATPases associa 98.0 2.2E-05 4.8E-10 63.5 8.1 89 2-93 3-92 (148)
120 KOG4579 Leucine-rich repeat (L 98.0 5.8E-07 1.3E-11 70.1 -1.3 86 287-374 55-140 (177)
121 PRK08451 DNA polymerase III su 98.0 0.00031 6.7E-09 69.2 17.0 96 78-175 116-219 (535)
122 PRK05896 DNA polymerase III su 98.0 0.00014 3.1E-09 72.1 14.7 159 3-171 40-217 (605)
123 TIGR03689 pup_AAA proteasome A 98.0 0.00015 3.3E-09 71.0 14.7 134 3-145 218-380 (512)
124 CHL00181 cbbX CbbX; Provisiona 98.0 0.00025 5.3E-09 64.9 15.3 128 4-146 62-212 (287)
125 KOG4579 Leucine-rich repeat (L 98.0 8.6E-07 1.9E-11 69.1 -0.7 104 287-392 29-135 (177)
126 PRK14954 DNA polymerase III su 98.0 0.00026 5.6E-09 71.3 16.4 165 3-170 40-224 (620)
127 PF00004 AAA: ATPase family as 98.0 1.2E-05 2.6E-10 64.5 5.8 22 4-25 1-22 (132)
128 PTZ00454 26S protease regulato 98.0 0.00012 2.6E-09 70.0 13.4 145 2-168 180-351 (398)
129 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.3E-10 67.4 5.1 103 308-422 41-146 (233)
130 PRK07133 DNA polymerase III su 98.0 0.00025 5.4E-09 71.9 15.7 93 78-172 117-217 (725)
131 PRK07764 DNA polymerase III su 98.0 0.00034 7.5E-09 72.7 17.0 150 3-171 39-218 (824)
132 PF04665 Pox_A32: Poxvirus A32 98.0 0.00023 5.1E-09 62.5 13.3 35 3-39 15-49 (241)
133 PRK14952 DNA polymerase III su 98.0 0.0004 8.6E-09 69.5 16.5 95 78-174 117-220 (584)
134 KOG0744 AAA+-type ATPase [Post 97.9 0.00011 2.5E-09 65.7 11.2 81 2-91 178-262 (423)
135 TIGR02880 cbbX_cfxQ probable R 97.9 0.00037 8E-09 63.8 15.1 129 3-146 60-211 (284)
136 PRK07261 topology modulation p 97.9 4.6E-05 1E-09 64.2 8.3 34 3-36 2-36 (171)
137 PTZ00361 26 proteosome regulat 97.9 5.2E-05 1.1E-09 73.0 9.5 143 3-168 219-389 (438)
138 PRK14950 DNA polymerase III su 97.9 0.00057 1.2E-08 69.2 17.3 164 3-175 40-222 (585)
139 KOG0989 Replication factor C, 97.9 0.00014 3.1E-09 64.8 11.2 166 2-179 58-235 (346)
140 TIGR02903 spore_lon_C ATP-depe 97.9 0.00029 6.4E-09 71.4 15.2 56 120-177 343-398 (615)
141 PRK05707 DNA polymerase III su 97.9 0.00063 1.4E-08 63.4 16.1 87 79-171 106-200 (328)
142 PRK07471 DNA polymerase III su 97.9 7E-05 1.5E-09 70.8 9.9 91 78-174 140-238 (365)
143 PRK14953 DNA polymerase III su 97.9 0.00061 1.3E-08 67.0 16.6 96 78-175 118-221 (486)
144 KOG0531 Protein phosphatase 1, 97.9 2E-06 4.4E-11 83.5 -0.7 105 263-372 95-201 (414)
145 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00062 1.3E-08 66.7 16.3 146 3-168 261-429 (489)
146 PRK08116 hypothetical protein; 97.9 4.2E-05 9.1E-10 69.3 7.7 99 3-115 116-221 (268)
147 PHA02544 44 clamp loader, smal 97.9 0.00017 3.6E-09 67.5 12.1 147 2-169 44-204 (316)
148 PRK06305 DNA polymerase III su 97.9 0.00086 1.9E-08 65.5 17.2 92 78-171 120-219 (451)
149 CHL00176 ftsH cell division pr 97.9 0.00041 8.9E-09 70.3 15.2 148 3-172 218-393 (638)
150 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00017 3.6E-09 75.9 12.7 152 4-168 211-390 (852)
151 COG2255 RuvB Holliday junction 97.8 0.0013 2.9E-08 58.2 15.8 146 4-178 55-227 (332)
152 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00035 7.7E-09 67.8 13.4 142 4-168 226-396 (802)
153 TIGR01241 FtsH_fam ATP-depende 97.8 0.0004 8.7E-09 69.0 14.2 149 4-174 91-267 (495)
154 PRK14971 DNA polymerase III su 97.8 0.00073 1.6E-08 68.4 16.1 151 3-172 41-220 (614)
155 PRK06647 DNA polymerase III su 97.8 0.0012 2.5E-08 66.2 17.3 94 78-173 118-219 (563)
156 PF12799 LRR_4: Leucine Rich r 97.8 3.8E-05 8.3E-10 48.3 4.3 35 358-392 2-36 (44)
157 COG1373 Predicted ATPase (AAA+ 97.8 0.00045 9.8E-09 66.3 13.5 114 3-139 39-163 (398)
158 PF12799 LRR_4: Leucine Rich r 97.8 3.4E-05 7.4E-10 48.5 3.7 39 333-373 2-40 (44)
159 PRK14948 DNA polymerase III su 97.8 0.0015 3.2E-08 66.2 17.1 165 3-175 40-223 (620)
160 PF00448 SRP54: SRP54-type pro 97.8 0.00013 2.8E-09 62.7 8.3 86 2-89 2-93 (196)
161 KOG0531 Protein phosphatase 1, 97.7 3.9E-06 8.5E-11 81.5 -1.8 103 263-370 118-221 (414)
162 PRK11331 5-methylcytosine-spec 97.7 8.1E-05 1.7E-09 71.0 7.0 88 2-91 195-284 (459)
163 KOG2227 Pre-initiation complex 97.7 0.0019 4.1E-08 61.1 15.7 144 3-146 177-341 (529)
164 PRK12608 transcription termina 97.7 0.00029 6.2E-09 65.8 10.4 88 3-91 135-232 (380)
165 KOG0735 AAA+-type ATPase [Post 97.7 0.00058 1.3E-08 67.5 12.8 147 3-168 433-609 (952)
166 KOG1859 Leucine-rich repeat pr 97.7 5.4E-06 1.2E-10 81.5 -1.0 104 305-424 183-287 (1096)
167 KOG1644 U2-associated snRNP A' 97.7 6.1E-05 1.3E-09 63.0 5.2 102 263-366 42-149 (233)
168 cd01393 recA_like RecA is a b 97.7 0.00033 7.1E-09 62.1 10.4 88 2-90 20-125 (226)
169 PF10443 RNA12: RNA12 protein; 97.7 0.0029 6.2E-08 59.8 16.6 177 3-185 19-289 (431)
170 KOG1909 Ran GTPase-activating 97.7 3E-05 6.6E-10 70.0 3.4 128 263-392 92-253 (382)
171 PRK14965 DNA polymerase III su 97.7 0.0011 2.4E-08 66.9 14.8 95 78-174 118-221 (576)
172 TIGR02639 ClpA ATP-dependent C 97.7 0.00052 1.1E-08 71.5 12.9 128 4-144 206-359 (731)
173 TIGR02012 tigrfam_recA protein 97.7 0.00015 3.2E-09 66.8 7.9 82 2-90 56-144 (321)
174 PF13191 AAA_16: AAA ATPase do 97.7 8.5E-05 1.8E-09 63.4 6.0 27 2-28 25-51 (185)
175 cd00983 recA RecA is a bacter 97.7 0.00016 3.5E-09 66.6 7.7 81 2-89 56-143 (325)
176 cd01120 RecA-like_NTPases RecA 97.7 0.00027 5.8E-09 58.8 8.6 40 3-44 1-40 (165)
177 PF08423 Rad51: Rad51; InterP 97.6 0.00028 6E-09 63.5 9.0 55 2-57 39-97 (256)
178 TIGR02237 recomb_radB DNA repa 97.6 0.00032 7E-09 61.3 9.0 46 2-50 13-58 (209)
179 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 4.9E-10 80.0 1.8 128 262-392 121-262 (699)
180 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00034 7.4E-09 62.4 9.2 49 2-50 20-72 (235)
181 COG1222 RPT1 ATP-dependent 26S 97.6 0.0015 3.2E-08 59.8 12.9 137 4-168 188-357 (406)
182 PF02562 PhoH: PhoH-like prote 97.6 0.00019 4.1E-09 61.6 7.0 110 2-115 20-156 (205)
183 PRK05563 DNA polymerase III su 97.6 0.0029 6.2E-08 63.6 16.3 159 3-171 40-217 (559)
184 PRK09354 recA recombinase A; P 97.6 0.00025 5.3E-09 65.9 8.0 82 2-90 61-149 (349)
185 PRK10536 hypothetical protein; 97.6 0.00058 1.2E-08 60.4 9.7 114 2-116 75-214 (262)
186 PRK09361 radB DNA repair and r 97.6 0.00032 6.9E-09 62.1 8.1 44 2-48 24-67 (225)
187 KOG3665 ZYG-1-like serine/thre 97.6 3.8E-05 8.2E-10 78.3 2.4 131 285-424 122-258 (699)
188 PRK12377 putative replication 97.6 0.00025 5.5E-09 63.1 7.4 97 3-115 103-206 (248)
189 PRK08181 transposase; Validate 97.6 0.00016 3.6E-09 65.1 6.2 97 3-116 108-210 (269)
190 TIGR01243 CDC48 AAA family ATP 97.5 0.0016 3.4E-08 68.1 14.3 149 4-174 490-664 (733)
191 PRK15386 type III secretion pr 97.5 0.00028 6E-09 66.7 7.6 113 263-390 52-187 (426)
192 PF07693 KAP_NTPase: KAP famil 97.5 0.0011 2.4E-08 62.2 11.8 42 3-44 22-64 (325)
193 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0019 4.1E-08 63.0 13.1 118 4-144 548-693 (802)
194 PRK15386 type III secretion pr 97.5 0.00037 8E-09 65.9 8.2 98 282-392 49-168 (426)
195 PLN00020 ribulose bisphosphate 97.5 0.0036 7.9E-08 58.1 14.1 142 2-170 149-334 (413)
196 PF13207 AAA_17: AAA domain; P 97.5 9.9E-05 2.1E-09 58.3 3.4 23 3-25 1-23 (121)
197 KOG2982 Uncharacterized conser 97.5 4.1E-05 9E-10 67.7 1.3 26 399-424 232-257 (418)
198 KOG0736 Peroxisome assembly fa 97.5 0.0019 4.1E-08 64.6 12.7 139 4-166 708-877 (953)
199 PRK04132 replication factor C 97.5 0.0033 7.2E-08 65.3 15.2 146 9-171 574-728 (846)
200 PRK06526 transposase; Provisio 97.5 0.00011 2.4E-09 65.8 4.1 72 3-91 100-171 (254)
201 KOG0991 Replication factor C, 97.5 0.0015 3.2E-08 56.1 10.3 77 2-92 49-126 (333)
202 PRK06921 hypothetical protein; 97.5 0.00069 1.5E-08 61.3 8.9 35 3-39 119-154 (266)
203 KOG2035 Replication factor C, 97.5 0.009 2E-07 52.8 15.2 180 4-196 37-260 (351)
204 PRK08769 DNA polymerase III su 97.4 0.0063 1.4E-07 56.4 15.2 86 79-172 113-206 (319)
205 PRK06871 DNA polymerase III su 97.4 0.0064 1.4E-07 56.4 15.0 151 4-169 27-198 (325)
206 PF05673 DUF815: Protein of un 97.4 0.0061 1.3E-07 53.4 13.8 23 4-26 55-77 (249)
207 CHL00095 clpC Clp protease ATP 97.4 0.0011 2.5E-08 69.8 11.2 127 4-142 203-353 (821)
208 KOG0743 AAA+-type ATPase [Post 97.4 0.0014 2.9E-08 61.9 10.3 160 5-196 239-433 (457)
209 KOG1514 Origin recognition com 97.4 0.0041 8.9E-08 61.7 13.9 172 2-176 423-623 (767)
210 PRK08058 DNA polymerase III su 97.4 0.0038 8.2E-08 58.5 13.3 65 78-142 109-181 (329)
211 PRK04296 thymidine kinase; Pro 97.4 0.00024 5.1E-09 61.0 4.8 112 2-118 3-119 (190)
212 PLN03187 meiotic recombination 97.4 0.0008 1.7E-08 62.8 8.6 56 2-58 127-186 (344)
213 TIGR00763 lon ATP-dependent pr 97.4 0.0029 6.2E-08 66.4 13.6 130 3-143 349-505 (775)
214 cd01394 radB RadB. The archaea 97.4 0.0013 2.9E-08 57.8 9.5 40 2-43 20-59 (218)
215 KOG2120 SCF ubiquitin ligase, 97.4 9.5E-06 2.1E-10 71.7 -4.0 150 262-423 209-370 (419)
216 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00072 1.6E-08 60.7 7.7 87 3-91 71-175 (274)
217 TIGR02238 recomb_DMC1 meiotic 97.4 0.00098 2.1E-08 61.7 8.9 56 2-58 97-156 (313)
218 COG0466 Lon ATP-dependent Lon 97.4 0.0015 3.2E-08 65.1 10.3 132 2-144 351-509 (782)
219 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0049 1.1E-07 55.8 13.2 42 3-49 23-64 (262)
220 COG0468 RecA RecA/RadA recombi 97.3 0.0017 3.6E-08 58.6 9.9 87 2-90 61-152 (279)
221 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0043 9.3E-08 65.8 14.2 128 3-143 196-349 (852)
222 PRK07399 DNA polymerase III su 97.3 0.012 2.7E-07 54.5 15.5 164 3-173 28-220 (314)
223 PRK05541 adenylylsulfate kinas 97.3 0.00057 1.2E-08 57.9 6.3 35 2-38 8-42 (176)
224 PRK10865 protein disaggregatio 97.3 0.0046 9.9E-08 65.4 13.7 128 3-143 201-354 (857)
225 KOG0741 AAA+-type ATPase [Post 97.3 0.0065 1.4E-07 58.4 13.1 118 3-142 540-685 (744)
226 KOG0730 AAA+-type ATPase [Post 97.2 0.0046 1E-07 61.0 12.0 143 2-168 469-637 (693)
227 PF01695 IstB_IS21: IstB-like 97.2 0.00078 1.7E-08 57.0 6.1 71 4-91 50-120 (178)
228 PRK14722 flhF flagellar biosyn 97.2 0.002 4.3E-08 60.7 9.3 88 2-91 138-227 (374)
229 PRK06217 hypothetical protein; 97.2 0.0017 3.7E-08 55.3 8.2 36 1-37 1-38 (183)
230 PF00154 RecA: recA bacterial 97.2 0.0018 4E-08 59.5 8.6 83 2-91 54-143 (322)
231 cd01131 PilT Pilus retraction 97.2 0.00094 2E-08 57.7 6.5 110 2-117 2-111 (198)
232 COG0464 SpoVK ATPases of the A 97.2 0.0061 1.3E-07 60.7 13.1 145 2-166 277-445 (494)
233 PRK11034 clpA ATP-dependent Cl 97.2 0.0029 6.4E-08 65.4 10.9 128 4-143 210-362 (758)
234 TIGR02239 recomb_RAD51 DNA rep 97.2 0.0018 4E-08 60.0 8.5 55 2-57 97-155 (316)
235 PRK04301 radA DNA repair and r 97.2 0.0025 5.4E-08 59.5 9.5 55 2-57 103-161 (317)
236 PRK11889 flhF flagellar biosyn 97.2 0.0024 5.1E-08 60.1 9.0 87 2-90 242-331 (436)
237 PTZ00035 Rad51 protein; Provis 97.2 0.0027 5.9E-08 59.5 9.5 55 2-57 119-177 (337)
238 PRK06835 DNA replication prote 97.1 0.0016 3.5E-08 60.6 7.8 35 3-39 185-219 (329)
239 PF07724 AAA_2: AAA domain (Cd 97.1 0.00063 1.4E-08 57.1 4.5 42 2-44 4-45 (171)
240 PRK10865 protein disaggregatio 97.1 0.011 2.3E-07 62.7 14.4 82 3-91 600-682 (857)
241 PRK07993 DNA polymerase III su 97.1 0.016 3.4E-07 54.3 14.1 86 78-170 107-200 (334)
242 KOG1909 Ran GTPase-activating 97.1 0.00028 6.1E-09 63.9 2.3 133 282-424 89-249 (382)
243 TIGR03499 FlhF flagellar biosy 97.1 0.003 6.4E-08 57.8 9.0 85 2-88 195-281 (282)
244 cd03115 SRP The signal recogni 97.1 0.0026 5.6E-08 53.7 8.1 87 3-91 2-94 (173)
245 TIGR00602 rad24 checkpoint pro 97.1 0.0059 1.3E-07 61.7 11.7 51 121-171 265-320 (637)
246 KOG1969 DNA replication checkp 97.1 0.0019 4.1E-08 64.3 7.9 71 2-91 327-399 (877)
247 PRK06090 DNA polymerase III su 97.1 0.044 9.6E-07 50.8 16.5 151 3-172 27-199 (319)
248 PRK10733 hflB ATP-dependent me 97.1 0.0083 1.8E-07 61.5 12.8 142 4-167 188-356 (644)
249 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0039 8.4E-08 55.6 9.2 47 2-52 22-68 (237)
250 TIGR01243 CDC48 AAA family ATP 97.0 0.0092 2E-07 62.4 13.3 144 3-168 214-381 (733)
251 PRK08233 hypothetical protein; 97.0 0.0023 5.1E-08 54.4 7.4 25 2-26 4-28 (182)
252 PRK07952 DNA replication prote 97.0 0.0032 6.8E-08 56.0 8.3 97 3-114 101-204 (244)
253 PF00485 PRK: Phosphoribulokin 97.0 0.0046 1E-07 53.3 9.1 79 3-83 1-87 (194)
254 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.0021 4.6E-08 54.8 6.9 23 3-25 1-23 (183)
255 PF08433 KTI12: Chromatin asso 97.0 0.0015 3.3E-08 59.0 6.2 26 1-26 1-26 (270)
256 KOG0735 AAA+-type ATPase [Post 97.0 0.015 3.2E-07 58.0 13.3 142 4-168 704-870 (952)
257 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.012 2.7E-07 48.3 11.0 112 2-116 3-139 (159)
258 COG4088 Predicted nucleotide k 97.0 0.0024 5.3E-08 53.8 6.8 26 1-26 1-26 (261)
259 PRK09519 recA DNA recombinatio 97.0 0.0024 5.2E-08 65.5 8.2 81 2-89 61-148 (790)
260 TIGR02639 ClpA ATP-dependent C 97.0 0.0087 1.9E-07 62.5 12.5 79 3-91 486-565 (731)
261 PF13238 AAA_18: AAA domain; P 97.0 0.00059 1.3E-08 54.3 3.1 22 4-25 1-22 (129)
262 COG0563 Adk Adenylate kinase a 97.0 0.0013 2.7E-08 55.6 5.2 83 3-91 2-89 (178)
263 COG1484 DnaC DNA replication p 97.0 0.0029 6.3E-08 56.8 7.8 71 4-90 108-178 (254)
264 COG2812 DnaX DNA polymerase II 97.0 0.014 3E-07 57.2 12.9 158 6-172 43-218 (515)
265 KOG2004 Mitochondrial ATP-depe 97.0 0.0043 9.3E-08 61.7 9.4 132 2-144 439-597 (906)
266 TIGR03346 chaperone_ClpB ATP-d 97.0 0.016 3.4E-07 61.6 14.4 82 3-91 597-679 (852)
267 PRK09183 transposase/IS protei 97.0 0.004 8.7E-08 56.2 8.6 23 3-25 104-126 (259)
268 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0093 2E-07 63.0 12.4 83 2-91 597-680 (852)
269 TIGR02236 recomb_radA DNA repa 96.9 0.0044 9.5E-08 57.7 9.0 55 2-57 96-154 (310)
270 cd02027 APSK Adenosine 5'-phos 96.9 0.0028 6.1E-08 52.0 6.7 24 3-26 1-24 (149)
271 PRK12727 flagellar biosynthesi 96.9 0.0044 9.6E-08 60.6 8.9 87 2-90 351-439 (559)
272 PLN03186 DNA repair protein RA 96.9 0.0056 1.2E-07 57.3 9.3 56 2-58 124-183 (342)
273 PRK08699 DNA polymerase III su 96.9 0.023 5.1E-07 52.9 13.4 64 79-142 113-184 (325)
274 cd01135 V_A-ATPase_B V/A-type 96.9 0.0051 1.1E-07 55.2 8.6 89 3-91 71-178 (276)
275 COG4608 AppF ABC-type oligopep 96.9 0.0054 1.2E-07 54.4 8.6 115 2-119 40-174 (268)
276 KOG0737 AAA+-type ATPase [Post 96.9 0.0077 1.7E-07 55.4 9.8 137 3-168 129-296 (386)
277 PF01583 APS_kinase: Adenylyls 96.9 0.00062 1.3E-08 55.7 2.5 35 2-38 3-37 (156)
278 PF13177 DNA_pol3_delta2: DNA 96.9 0.018 3.9E-07 47.9 11.3 112 3-130 21-161 (162)
279 COG1223 Predicted ATPase (AAA+ 96.9 0.013 2.9E-07 51.3 10.5 141 2-168 152-319 (368)
280 PRK08939 primosomal protein Dn 96.9 0.0026 5.6E-08 58.8 6.7 95 3-114 158-260 (306)
281 PRK06964 DNA polymerase III su 96.9 0.047 1E-06 51.1 15.0 83 79-171 132-222 (342)
282 cd03216 ABC_Carb_Monos_I This 96.9 0.0049 1.1E-07 51.4 7.8 119 2-127 27-155 (163)
283 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0065 1.4E-07 54.9 9.1 38 2-41 37-74 (259)
284 PF13481 AAA_25: AAA domain; P 96.9 0.0021 4.6E-08 55.3 5.7 40 3-42 34-81 (193)
285 PF07728 AAA_5: AAA domain (dy 96.9 0.0028 6E-08 51.3 6.0 75 4-91 2-77 (139)
286 cd02019 NK Nucleoside/nucleoti 96.8 0.0011 2.4E-08 46.4 3.1 23 3-25 1-23 (69)
287 cd03214 ABC_Iron-Siderophores_ 96.8 0.012 2.7E-07 49.9 10.1 123 2-127 26-171 (180)
288 TIGR00064 ftsY signal recognit 96.8 0.0077 1.7E-07 54.7 9.3 88 2-91 73-166 (272)
289 PRK12726 flagellar biosynthesi 96.8 0.0077 1.7E-07 56.5 9.3 87 2-90 207-296 (407)
290 COG1618 Predicted nucleotide k 96.8 0.0016 3.5E-08 52.7 4.2 25 3-27 7-31 (179)
291 PRK13695 putative NTPase; Prov 96.8 0.0023 4.9E-08 54.1 5.5 24 3-26 2-25 (174)
292 PRK06067 flagellar accessory p 96.8 0.0079 1.7E-07 53.5 9.1 46 2-51 26-71 (234)
293 PRK10787 DNA-binding ATP-depen 96.8 0.01 2.2E-07 61.9 11.1 132 2-144 350-507 (784)
294 PRK12597 F0F1 ATP synthase sub 96.8 0.0059 1.3E-07 59.1 8.7 87 3-90 145-248 (461)
295 PF00910 RNA_helicase: RNA hel 96.8 0.001 2.2E-08 51.2 2.8 23 4-26 1-23 (107)
296 TIGR01425 SRP54_euk signal rec 96.8 0.0057 1.2E-07 58.7 8.4 37 2-40 101-137 (429)
297 cd02025 PanK Pantothenate kina 96.8 0.0074 1.6E-07 53.0 8.6 40 3-42 1-40 (220)
298 COG1102 Cmk Cytidylate kinase 96.8 0.0052 1.1E-07 49.7 6.7 45 3-60 2-46 (179)
299 PRK10867 signal recognition pa 96.8 0.007 1.5E-07 58.4 8.9 38 2-41 101-139 (433)
300 PRK00771 signal recognition pa 96.8 0.0071 1.5E-07 58.5 8.9 86 2-90 96-186 (437)
301 PRK08972 fliI flagellum-specif 96.7 0.0055 1.2E-07 58.7 8.0 86 2-91 163-264 (444)
302 PF09848 DUF2075: Uncharacteri 96.7 0.0049 1.1E-07 58.5 7.7 90 2-93 2-97 (352)
303 cd03238 ABC_UvrA The excision 96.7 0.01 2.2E-07 50.0 8.8 116 2-128 22-162 (176)
304 COG0572 Udk Uridine kinase [Nu 96.7 0.0041 8.9E-08 53.5 6.3 25 2-26 9-33 (218)
305 TIGR00959 ffh signal recogniti 96.7 0.0077 1.7E-07 58.1 8.8 39 2-41 100-138 (428)
306 cd01121 Sms Sms (bacterial rad 96.7 0.0081 1.8E-07 57.0 8.8 81 2-91 83-170 (372)
307 PTZ00301 uridine kinase; Provi 96.7 0.0014 3.1E-08 56.9 3.5 24 2-25 4-27 (210)
308 PRK04328 hypothetical protein; 96.7 0.0071 1.5E-07 54.3 8.1 38 2-41 24-61 (249)
309 COG1419 FlhF Flagellar GTP-bin 96.7 0.012 2.7E-07 55.2 9.7 86 2-89 204-291 (407)
310 PF13671 AAA_33: AAA domain; P 96.7 0.0015 3.3E-08 53.1 3.3 23 3-25 1-23 (143)
311 PRK09280 F0F1 ATP synthase sub 96.7 0.0095 2.1E-07 57.6 9.1 88 3-91 146-250 (463)
312 PRK14721 flhF flagellar biosyn 96.7 0.013 2.8E-07 56.2 10.0 59 2-60 192-251 (420)
313 PRK05703 flhF flagellar biosyn 96.7 0.0097 2.1E-07 57.6 9.3 86 2-89 222-309 (424)
314 PRK00889 adenylylsulfate kinas 96.7 0.0044 9.6E-08 52.4 6.2 25 2-26 5-29 (175)
315 PF10236 DAP3: Mitochondrial r 96.7 0.097 2.1E-06 48.6 15.4 48 124-171 258-306 (309)
316 PF00006 ATP-synt_ab: ATP synt 96.7 0.0071 1.5E-07 52.6 7.4 84 3-90 17-116 (215)
317 PTZ00088 adenylate kinase 1; P 96.6 0.0019 4E-08 57.0 3.8 22 4-25 9-30 (229)
318 cd00544 CobU Adenosylcobinamid 96.6 0.0099 2.1E-07 49.7 7.9 81 3-89 1-83 (169)
319 CHL00206 ycf2 Ycf2; Provisiona 96.6 0.076 1.7E-06 59.3 16.2 24 3-26 1632-1655(2281)
320 COG5635 Predicted NTPase (NACH 96.6 0.012 2.5E-07 62.4 10.3 191 3-196 224-449 (824)
321 COG0396 sufC Cysteine desulfur 96.6 0.017 3.6E-07 49.9 9.1 48 72-119 155-208 (251)
322 PRK06995 flhF flagellar biosyn 96.6 0.011 2.5E-07 57.6 9.3 86 2-89 257-344 (484)
323 PRK12723 flagellar biosynthesi 96.6 0.0072 1.6E-07 57.5 7.8 88 2-91 175-266 (388)
324 PRK06762 hypothetical protein; 96.6 0.0019 4.2E-08 54.0 3.6 24 2-25 3-26 (166)
325 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.018 3.8E-07 51.1 9.9 38 2-41 21-58 (229)
326 PRK06002 fliI flagellum-specif 96.6 0.0073 1.6E-07 58.1 7.8 87 2-91 166-266 (450)
327 PRK04040 adenylate kinase; Pro 96.6 0.002 4.3E-08 55.1 3.6 25 1-25 2-26 (188)
328 KOG2228 Origin recognition com 96.6 0.056 1.2E-06 49.4 12.7 139 3-143 51-219 (408)
329 COG0470 HolB ATPase involved i 96.6 0.024 5.2E-07 53.1 11.2 114 4-132 27-170 (325)
330 COG1428 Deoxynucleoside kinase 96.6 0.0048 1E-07 52.5 5.6 48 2-54 5-52 (216)
331 PRK07132 DNA polymerase III su 96.6 0.1 2.3E-06 47.9 14.9 149 3-174 20-185 (299)
332 KOG0739 AAA+-type ATPase [Post 96.6 0.039 8.5E-07 49.4 11.4 144 2-168 167-335 (439)
333 TIGR03305 alt_F1F0_F1_bet alte 96.6 0.0071 1.5E-07 58.3 7.5 88 3-91 140-244 (449)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.009 1.9E-07 48.7 7.1 99 2-119 27-131 (144)
335 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0022 4.8E-08 54.9 3.7 25 1-25 3-27 (188)
336 cd03223 ABCD_peroxisomal_ALDP 96.6 0.019 4.1E-07 48.1 9.1 24 2-25 28-51 (166)
337 TIGR01039 atpD ATP synthase, F 96.5 0.0096 2.1E-07 57.4 8.1 88 3-91 145-249 (461)
338 PRK11034 clpA ATP-dependent Cl 96.5 0.02 4.3E-07 59.5 10.8 80 2-91 489-569 (758)
339 PRK05480 uridine/cytidine kina 96.5 0.0023 4.9E-08 55.9 3.6 24 2-25 7-30 (209)
340 PRK12724 flagellar biosynthesi 96.5 0.0093 2E-07 56.8 7.7 82 2-87 224-307 (432)
341 PF13604 AAA_30: AAA domain; P 96.5 0.0056 1.2E-07 52.8 5.8 104 2-117 19-133 (196)
342 PRK08927 fliI flagellum-specif 96.5 0.016 3.4E-07 55.8 9.4 86 2-91 159-260 (442)
343 cd03247 ABCC_cytochrome_bd The 96.5 0.021 4.5E-07 48.4 9.3 24 2-25 29-52 (178)
344 PRK06547 hypothetical protein; 96.5 0.0026 5.7E-08 53.4 3.6 24 2-25 16-39 (172)
345 PF00625 Guanylate_kin: Guanyl 96.5 0.0039 8.4E-08 53.2 4.8 37 2-40 3-39 (183)
346 COG2274 SunT ABC-type bacterio 96.5 0.019 4.1E-07 59.0 10.4 25 2-26 500-524 (709)
347 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0066 1.4E-07 54.6 6.4 24 3-26 1-24 (249)
348 PRK08149 ATP synthase SpaL; Va 96.5 0.013 2.8E-07 56.3 8.6 86 2-91 152-253 (428)
349 PRK06696 uridine kinase; Valid 96.5 0.0024 5.3E-08 56.3 3.6 25 2-26 23-47 (223)
350 COG1066 Sms Predicted ATP-depe 96.5 0.018 3.9E-07 53.9 9.2 81 2-91 94-180 (456)
351 PRK05973 replicative DNA helic 96.5 0.019 4.1E-07 50.7 8.9 46 2-51 65-110 (237)
352 PRK11823 DNA repair protein Ra 96.5 0.013 2.9E-07 57.2 8.8 81 2-91 81-168 (446)
353 KOG2739 Leucine-rich acidic nu 96.5 0.0018 3.8E-08 56.7 2.4 103 307-422 41-149 (260)
354 PF13245 AAA_19: Part of AAA d 96.5 0.0072 1.6E-07 43.1 5.1 24 2-25 11-34 (76)
355 PF03205 MobB: Molybdopterin g 96.5 0.0042 9.2E-08 50.2 4.4 39 2-41 1-39 (140)
356 TIGR00235 udk uridine kinase. 96.4 0.0028 6E-08 55.3 3.6 25 2-26 7-31 (207)
357 cd00984 DnaB_C DnaB helicase C 96.4 0.017 3.7E-07 51.6 8.8 50 2-54 14-63 (242)
358 TIGR01351 adk adenylate kinase 96.4 0.0089 1.9E-07 52.2 6.7 22 4-25 2-23 (210)
359 COG1120 FepC ABC-type cobalami 96.4 0.026 5.7E-07 50.2 9.6 127 2-128 29-213 (258)
360 PRK14974 cell division protein 96.4 0.015 3.3E-07 54.2 8.5 88 2-91 141-234 (336)
361 KOG2123 Uncharacterized conser 96.4 0.00024 5.3E-09 62.4 -3.2 100 282-386 16-123 (388)
362 KOG2123 Uncharacterized conser 96.4 0.00019 4.1E-09 63.1 -3.9 97 263-363 19-123 (388)
363 TIGR01069 mutS2 MutS2 family p 96.4 0.0028 6.1E-08 65.9 3.9 23 2-24 323-345 (771)
364 TIGR00708 cobA cob(I)alamin ad 96.4 0.04 8.7E-07 45.9 10.0 112 2-117 6-142 (173)
365 PRK05922 type III secretion sy 96.4 0.015 3.3E-07 55.8 8.6 86 2-91 158-259 (434)
366 TIGR00416 sms DNA repair prote 96.4 0.019 4.1E-07 56.1 9.4 81 2-91 95-182 (454)
367 COG2884 FtsE Predicted ATPase 96.4 0.056 1.2E-06 45.3 10.6 24 3-26 30-53 (223)
368 PRK14532 adenylate kinase; Pro 96.4 0.014 3E-07 50.0 7.6 22 4-25 3-24 (188)
369 PRK03839 putative kinase; Prov 96.4 0.0031 6.8E-08 53.6 3.5 23 3-25 2-24 (180)
370 KOG2120 SCF ubiquitin ligase, 96.4 0.00031 6.7E-09 62.4 -2.7 150 262-424 184-346 (419)
371 KOG2982 Uncharacterized conser 96.4 0.0054 1.2E-07 54.7 4.9 152 263-422 97-285 (418)
372 cd00227 CPT Chloramphenicol (C 96.4 0.0032 6.9E-08 53.3 3.5 24 2-25 3-26 (175)
373 PRK06936 type III secretion sy 96.4 0.017 3.7E-07 55.5 8.7 86 2-91 163-264 (439)
374 PF06745 KaiC: KaiC; InterPro 96.4 0.007 1.5E-07 53.5 5.8 84 2-90 20-126 (226)
375 PRK00279 adk adenylate kinase; 96.4 0.012 2.6E-07 51.6 7.2 23 3-25 2-24 (215)
376 PRK14723 flhF flagellar biosyn 96.4 0.017 3.8E-07 59.2 9.2 40 2-41 186-225 (767)
377 cd02024 NRK1 Nicotinamide ribo 96.4 0.0028 6.1E-08 53.9 3.0 23 3-25 1-23 (187)
378 PRK14531 adenylate kinase; Pro 96.4 0.011 2.4E-07 50.4 6.7 23 3-25 4-26 (183)
379 cd01122 GP4d_helicase GP4d_hel 96.4 0.034 7.3E-07 50.7 10.4 51 2-55 31-81 (271)
380 PF07726 AAA_3: ATPase family 96.4 0.0022 4.8E-08 50.2 2.1 28 4-33 2-29 (131)
381 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.021 4.6E-07 47.2 8.3 120 2-127 26-153 (157)
382 PF12775 AAA_7: P-loop contain 96.3 0.0039 8.4E-08 56.6 4.0 77 3-90 35-111 (272)
383 TIGR03498 FliI_clade3 flagella 96.3 0.017 3.6E-07 55.5 8.4 87 2-91 141-242 (418)
384 PF03215 Rad17: Rad17 cell cyc 96.3 0.029 6.3E-07 55.6 10.2 33 2-38 46-78 (519)
385 PRK13949 shikimate kinase; Pro 96.3 0.0039 8.4E-08 52.3 3.6 25 1-25 1-25 (169)
386 KOG2739 Leucine-rich acidic nu 96.3 0.0023 5E-08 56.0 2.2 75 263-339 43-123 (260)
387 TIGR02858 spore_III_AA stage I 96.3 0.02 4.3E-07 51.8 8.3 110 3-117 113-231 (270)
388 TIGR01041 ATP_syn_B_arch ATP s 96.3 0.019 4E-07 55.8 8.5 89 3-91 143-250 (458)
389 PRK05800 cobU adenosylcobinami 96.3 0.024 5.3E-07 47.5 8.3 82 2-90 2-87 (170)
390 KOG0731 AAA+-type ATPase conta 96.3 0.095 2E-06 53.5 13.6 145 4-170 347-520 (774)
391 cd01125 repA Hexameric Replica 96.3 0.052 1.1E-06 48.4 10.9 24 3-26 3-26 (239)
392 cd02023 UMPK Uridine monophosp 96.3 0.0032 6.9E-08 54.5 3.0 23 3-25 1-23 (198)
393 TIGR02322 phosphon_PhnN phosph 96.3 0.0039 8.5E-08 52.9 3.5 25 2-26 2-26 (179)
394 PRK13947 shikimate kinase; Pro 96.3 0.0044 9.5E-08 52.1 3.8 25 1-25 1-25 (171)
395 cd03228 ABCC_MRP_Like The MRP 96.3 0.037 8E-07 46.5 9.4 24 2-25 29-52 (171)
396 cd02028 UMPK_like Uridine mono 96.3 0.0048 1E-07 52.4 4.0 24 3-26 1-24 (179)
397 TIGR00554 panK_bact pantothena 96.3 0.015 3.2E-07 53.1 7.3 78 2-79 63-141 (290)
398 COG2607 Predicted ATPase (AAA+ 96.3 0.043 9.3E-07 47.7 9.5 23 4-26 88-110 (287)
399 TIGR01420 pilT_fam pilus retra 96.3 0.011 2.5E-07 55.7 6.8 110 2-117 123-232 (343)
400 PRK14493 putative bifunctional 96.3 0.0061 1.3E-07 55.2 4.8 37 1-40 1-37 (274)
401 PF00406 ADK: Adenylate kinase 96.2 0.013 2.7E-07 48.2 6.3 78 6-91 1-85 (151)
402 PRK07667 uridine kinase; Provi 96.2 0.0043 9.4E-08 53.4 3.6 25 2-26 18-42 (193)
403 cd02021 GntK Gluconate kinase 96.2 0.0036 7.8E-08 51.4 3.0 23 3-25 1-23 (150)
404 CHL00060 atpB ATP synthase CF1 96.2 0.026 5.6E-07 54.9 9.1 88 3-91 163-274 (494)
405 PF02374 ArsA_ATPase: Anion-tr 96.2 0.0059 1.3E-07 56.4 4.6 48 1-50 1-48 (305)
406 cd00071 GMPK Guanosine monopho 96.2 0.0042 9.1E-08 50.1 3.2 23 3-25 1-23 (137)
407 TIGR03263 guanyl_kin guanylate 96.2 0.004 8.8E-08 52.9 3.2 24 2-25 2-25 (180)
408 TIGR01040 V-ATPase_V1_B V-type 96.2 0.025 5.3E-07 54.5 8.6 88 3-90 143-258 (466)
409 cd03246 ABCC_Protease_Secretio 96.2 0.032 7E-07 47.0 8.7 24 2-25 29-52 (173)
410 cd01136 ATPase_flagellum-secre 96.2 0.027 5.9E-07 52.2 8.7 86 2-91 70-171 (326)
411 PRK10416 signal recognition pa 96.2 0.035 7.5E-07 51.6 9.4 38 2-41 115-152 (318)
412 PRK00131 aroK shikimate kinase 96.2 0.0048 1E-07 52.0 3.5 24 2-25 5-28 (175)
413 PHA00729 NTP-binding motif con 96.2 0.0045 9.7E-08 53.9 3.3 23 3-25 19-41 (226)
414 KOG0734 AAA+-type ATPase conta 96.2 0.039 8.5E-07 53.3 9.7 65 4-91 340-408 (752)
415 COG0194 Gmk Guanylate kinase [ 96.2 0.005 1.1E-07 51.3 3.4 24 2-25 5-28 (191)
416 cd02020 CMPK Cytidine monophos 96.2 0.0043 9.4E-08 50.6 3.1 23 3-25 1-23 (147)
417 cd01132 F1_ATPase_alpha F1 ATP 96.2 0.03 6.4E-07 50.3 8.5 85 3-91 71-173 (274)
418 COG3910 Predicted ATPase [Gene 96.2 0.11 2.3E-06 43.5 11.0 49 80-128 147-202 (233)
419 KOG0728 26S proteasome regulat 96.2 0.099 2.2E-06 45.6 11.2 116 4-143 184-331 (404)
420 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.052 1.1E-06 48.1 9.8 126 2-128 31-213 (254)
421 KOG2859 DNA repair protein, me 96.1 0.049 1.1E-06 46.3 9.1 89 3-91 40-139 (293)
422 PRK10751 molybdopterin-guanine 96.1 0.0057 1.2E-07 51.1 3.6 26 1-26 6-31 (173)
423 cd03116 MobB Molybdenum is an 96.1 0.0078 1.7E-07 49.8 4.4 26 1-26 1-26 (159)
424 PRK09099 type III secretion sy 96.1 0.026 5.7E-07 54.5 8.6 87 2-91 164-265 (441)
425 KOG0738 AAA+-type ATPase [Post 96.1 0.033 7.2E-07 51.7 8.7 25 2-26 246-270 (491)
426 PRK15453 phosphoribulokinase; 96.1 0.036 7.8E-07 49.9 8.8 74 2-77 6-88 (290)
427 COG1936 Predicted nucleotide k 96.1 0.005 1.1E-07 50.6 3.0 20 3-22 2-21 (180)
428 PF03266 NTPase_1: NTPase; In 96.1 0.0053 1.1E-07 51.3 3.3 23 4-26 2-24 (168)
429 COG3640 CooC CO dehydrogenase 96.1 0.013 2.7E-07 50.7 5.5 41 3-44 2-42 (255)
430 cd01124 KaiC KaiC is a circadi 96.1 0.0076 1.6E-07 51.5 4.4 45 3-51 1-45 (187)
431 KOG0652 26S proteasome regulat 96.1 0.06 1.3E-06 47.2 9.6 131 4-158 208-371 (424)
432 PRK00625 shikimate kinase; Pro 96.1 0.006 1.3E-07 51.3 3.5 23 3-25 2-24 (173)
433 COG1763 MobB Molybdopterin-gua 96.1 0.0058 1.3E-07 50.3 3.3 26 1-26 2-27 (161)
434 KOG0727 26S proteasome regulat 96.1 0.093 2E-06 45.9 10.6 27 3-31 191-217 (408)
435 cd02040 NifH NifH gene encodes 96.1 0.01 2.2E-07 54.1 5.3 42 1-44 1-42 (270)
436 KOG0736 Peroxisome assembly fa 96.1 0.11 2.4E-06 52.6 12.6 145 2-168 432-598 (953)
437 KOG0066 eIF2-interacting prote 96.1 0.09 1.9E-06 49.7 11.3 129 2-130 614-777 (807)
438 KOG3928 Mitochondrial ribosome 96.1 0.2 4.4E-06 47.1 13.4 59 120-178 401-460 (461)
439 PF13086 AAA_11: AAA domain; P 96.0 0.0094 2E-07 52.7 4.9 52 3-54 19-75 (236)
440 COG2019 AdkA Archaeal adenylat 96.0 0.0067 1.5E-07 49.4 3.4 25 1-25 4-28 (189)
441 PRK00300 gmk guanylate kinase; 96.0 0.0058 1.3E-07 53.1 3.4 24 2-25 6-29 (205)
442 PF03969 AFG1_ATPase: AFG1-lik 96.0 0.013 2.8E-07 55.4 5.9 75 4-91 65-139 (362)
443 COG4618 ArpD ABC-type protease 96.0 0.051 1.1E-06 52.3 9.7 24 3-26 364-387 (580)
444 TIGR00150 HI0065_YjeE ATPase, 96.0 0.0071 1.5E-07 48.1 3.5 26 2-27 23-48 (133)
445 COG0529 CysC Adenylylsulfate k 96.0 0.013 2.9E-07 48.2 5.1 24 3-26 25-48 (197)
446 cd02029 PRK_like Phosphoribulo 96.0 0.028 6.2E-07 50.1 7.6 76 3-80 1-85 (277)
447 COG0467 RAD55 RecA-superfamily 96.0 0.01 2.2E-07 53.8 5.0 48 2-53 24-71 (260)
448 TIGR02655 circ_KaiC circadian 96.0 0.024 5.3E-07 56.2 8.0 47 2-52 264-310 (484)
449 cd01672 TMPK Thymidine monopho 96.0 0.017 3.8E-07 49.7 6.3 25 2-26 1-25 (200)
450 PRK13768 GTPase; Provisional 96.0 0.011 2.3E-07 53.3 5.0 37 1-39 2-38 (253)
451 PRK00409 recombination and DNA 96.0 0.05 1.1E-06 57.0 10.6 106 2-119 328-454 (782)
452 KOG1532 GTPase XAB1, interacts 96.0 0.034 7.4E-07 49.1 7.8 56 3-60 21-87 (366)
453 COG1157 FliI Flagellar biosynt 96.0 0.029 6.2E-07 52.7 7.8 84 3-90 165-264 (441)
454 PRK14737 gmk guanylate kinase; 96.0 0.0061 1.3E-07 52.0 3.3 24 2-25 5-28 (186)
455 PRK08533 flagellar accessory p 96.0 0.021 4.6E-07 50.5 6.8 47 2-52 25-71 (230)
456 PRK12678 transcription termina 96.0 0.017 3.6E-07 56.9 6.5 88 3-91 418-515 (672)
457 PF02456 Adeno_IVa2: Adenoviru 96.0 0.35 7.6E-06 43.8 14.0 160 3-176 89-296 (369)
458 PF03308 ArgK: ArgK protein; 96.0 0.0093 2E-07 52.6 4.3 43 2-44 30-72 (266)
459 KOG0729 26S proteasome regulat 95.9 0.019 4.2E-07 50.4 6.0 22 4-25 214-235 (435)
460 PRK05439 pantothenate kinase; 95.9 0.043 9.4E-07 50.5 8.7 23 3-25 88-110 (311)
461 PRK01184 hypothetical protein; 95.9 0.0074 1.6E-07 51.5 3.5 24 1-25 1-24 (184)
462 PRK14529 adenylate kinase; Pro 95.9 0.02 4.2E-07 50.2 6.1 83 4-91 3-88 (223)
463 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0074 1.6E-07 45.9 3.0 21 2-22 16-36 (107)
464 TIGR00455 apsK adenylylsulfate 95.9 0.021 4.6E-07 48.7 6.3 25 2-26 19-43 (184)
465 PRK14528 adenylate kinase; Pro 95.9 0.0083 1.8E-07 51.3 3.7 25 1-25 1-25 (186)
466 COG1124 DppF ABC-type dipeptid 95.9 0.01 2.2E-07 51.6 4.2 23 3-25 35-57 (252)
467 cd01134 V_A-ATPase_A V/A-type 95.9 0.071 1.5E-06 49.5 9.9 47 3-53 159-206 (369)
468 PRK14530 adenylate kinase; Pro 95.9 0.0077 1.7E-07 52.8 3.6 24 2-25 4-27 (215)
469 PTZ00494 tuzin-like protein; P 95.9 0.39 8.5E-06 46.0 14.7 133 2-143 396-544 (664)
470 PRK07196 fliI flagellum-specif 95.9 0.029 6.3E-07 54.0 7.7 86 2-91 156-257 (434)
471 TIGR01313 therm_gnt_kin carboh 95.9 0.006 1.3E-07 50.9 2.7 22 4-25 1-22 (163)
472 PRK13975 thymidylate kinase; P 95.9 0.008 1.7E-07 51.8 3.6 25 2-26 3-27 (196)
473 PF14532 Sigma54_activ_2: Sigm 95.9 0.012 2.7E-07 47.5 4.5 24 3-26 23-46 (138)
474 PF08477 Miro: Miro-like prote 95.9 0.0079 1.7E-07 47.0 3.2 23 4-26 2-24 (119)
475 PRK13230 nitrogenase reductase 95.9 0.01 2.3E-07 54.3 4.5 40 1-42 1-40 (279)
476 PRK06793 fliI flagellum-specif 95.8 0.032 6.9E-07 53.7 7.7 87 2-91 157-258 (432)
477 PTZ00185 ATPase alpha subunit; 95.8 0.066 1.4E-06 52.2 9.8 88 3-90 191-300 (574)
478 PF03029 ATP_bind_1: Conserved 95.8 0.011 2.5E-07 52.4 4.4 34 6-41 1-34 (238)
479 smart00763 AAA_PrkA PrkA AAA d 95.8 0.008 1.7E-07 56.1 3.5 25 2-26 79-103 (361)
480 COG0055 AtpD F0F1-type ATP syn 95.8 0.021 4.6E-07 52.6 6.1 88 2-90 148-252 (468)
481 COG0003 ArsA Predicted ATPase 95.8 0.016 3.5E-07 53.6 5.5 49 1-51 2-50 (322)
482 PF10662 PduV-EutP: Ethanolami 95.8 0.0085 1.8E-07 48.1 3.2 26 1-26 1-26 (143)
483 PRK10078 ribose 1,5-bisphospho 95.8 0.0077 1.7E-07 51.5 3.2 24 2-25 3-26 (186)
484 COG0378 HypB Ni2+-binding GTPa 95.8 0.016 3.4E-07 48.7 4.8 48 1-50 13-61 (202)
485 TIGR02902 spore_lonB ATP-depen 95.8 0.15 3.3E-06 51.1 12.7 41 106-146 234-279 (531)
486 PLN02924 thymidylate kinase 95.8 0.045 9.8E-07 48.0 8.0 26 2-27 17-42 (220)
487 PRK14527 adenylate kinase; Pro 95.8 0.009 2E-07 51.3 3.6 25 2-26 7-31 (191)
488 cd00464 SK Shikimate kinase (S 95.8 0.0086 1.9E-07 49.3 3.3 22 4-25 2-23 (154)
489 PRK12339 2-phosphoglycerate ki 95.8 0.0092 2E-07 51.3 3.5 24 2-25 4-27 (197)
490 PF13521 AAA_28: AAA domain; P 95.8 0.0075 1.6E-07 50.3 2.9 21 4-24 2-22 (163)
491 TIGR00041 DTMP_kinase thymidyl 95.8 0.026 5.5E-07 48.6 6.3 25 2-26 4-28 (195)
492 PRK06761 hypothetical protein; 95.8 0.02 4.3E-07 51.9 5.7 25 2-26 4-28 (282)
493 PRK07721 fliI flagellum-specif 95.8 0.038 8.2E-07 53.6 8.0 86 2-90 159-259 (438)
494 PRK04196 V-type ATP synthase s 95.8 0.031 6.7E-07 54.4 7.4 89 3-91 145-252 (460)
495 PRK03846 adenylylsulfate kinas 95.8 0.014 3.1E-07 50.4 4.6 24 2-25 25-48 (198)
496 PRK05986 cob(I)alamin adenolsy 95.8 0.077 1.7E-06 45.0 8.8 112 2-116 23-159 (191)
497 TIGR01026 fliI_yscN ATPase Fli 95.7 0.038 8.2E-07 53.6 7.9 86 2-91 164-265 (440)
498 COG4778 PhnL ABC-type phosphon 95.7 0.015 3.2E-07 47.6 4.2 33 3-38 39-71 (235)
499 smart00072 GuKc Guanylate kina 95.7 0.012 2.5E-07 50.3 3.8 24 2-25 3-26 (184)
500 PLN02348 phosphoribulokinase 95.7 0.039 8.5E-07 52.1 7.5 25 2-26 50-74 (395)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-59 Score=478.81 Aligned_cols=410 Identities=29% Similarity=0.475 Sum_probs=359.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc-cCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccChhHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG-ESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNNDLRADIISKELN 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~ 77 (424)
++++|+||||+||||||++++++.. ++.+||.++||.|++.++...+.++|+..++... .....++.+..+.+.|+
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE 259 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence 5899999999999999999999998 8999999999999999999999999999998755 33344788899999999
Q ss_pred cCcEEEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhccc-CCCCc
Q 037045 78 DRSYVLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYP 151 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~ 151 (424)
.+|++||+||+|+..+|+.+ ++|....||||++|||++.+.. +....++++.|+++|||++|.+.++.. ....+
T Consensus 260 ~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~ 339 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHP 339 (889)
T ss_pred cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccc
Confidence 99999999999999999999 5556678899999999999998 557889999999999999999999877 44556
Q ss_pred cHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccc-hhhhhHHHhhhhccCCcchHhHHhhh
Q 037045 152 DIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKE-LEEVDRFFTLVYKNLSLEQQHCLLGW 230 (424)
Q Consensus 152 ~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~~~l~~s~~~L~~~~k~~~~~l 230 (424)
..++.|+++++.|+|+|+|+.++|+.++.+.+..+|+++.+.+......+.+. .+.+..++..||+.|+++.|.||+||
T Consensus 340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyc 419 (889)
T KOG4658|consen 340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYC 419 (889)
T ss_pred cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999998822444433 37999999999999998899999999
Q ss_pred hhccCCCCCChHHHHhhhhhcchhhh-------------------------------------hhhccc-----------
Q 037045 231 AIFSTGLELSQDYIIDGWAAQKFLAS-------------------------------------FNKIGD----------- 262 (424)
Q Consensus 231 a~fp~~~~i~~~~Li~~w~~~~~~~~-------------------------------------~~d~~~----------- 262 (424)
|.||+|+.|+.+.|+.+|++|||+.+ |||+.+
T Consensus 420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccc
Confidence 99999999999999999999999966 277722
Q ss_pred -----------------------cceeEEEeeccCCCCCCCCcCcccccEEEccCCC--CCCCChHHhcccCCCcEEEcc
Q 037045 263 -----------------------AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKR--LEKLPTSFFDYMCHLQLLDLH 317 (424)
Q Consensus 263 -----------------------~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~L~l~ 317 (424)
..+|++.+.+|.+..++.-..++.|++|-+..|. +...+..+|..++.|++||++
T Consensus 500 ~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 500 KQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred ccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC
Confidence 4678888899988888877888899999999986 778888889999999999999
Q ss_pred CC-CCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeeeccccCCCC
Q 037045 318 ET-NIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 318 ~~-~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
+| .+..+|..++.|.+|++|++ ..+.+..+|..++++.+|.+|++.++. ...+|.....|.+|++|.+..-..
T Consensus 580 ~~~~l~~LP~~I~~Li~LryL~L--~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~--- 654 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGELVHLRYLDL--SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL--- 654 (889)
T ss_pred CCCccCcCChHHhhhhhhhcccc--cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---
Confidence 88 45999999999999999999 899999999999999999999999987 556665567799999999887531
Q ss_pred cccCCCCCCCCcChhhhhccccCceeec
Q 037045 396 HTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
......+.++.+|.+|+.|.+
T Consensus 655 -------~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 655 -------SNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred -------ccchhhHHhhhcccchhhhee
Confidence 224556667777777766654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-42 Score=372.32 Aligned_cols=380 Identities=21% Similarity=0.320 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe---ccCC-----------C-HHHHHHHHHHHhcccccccCh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI---NTDG-----------N-IRDIQEIILERLKVNAKELNN 65 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~~~~ 65 (424)
+++|+|+||||+||||||+.+|++. ..+|++.+|++. .... + ...+.++++.++...... ..
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~ 283 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KI 283 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-cc
Confidence 4799999999999999999999987 688988888752 1110 0 123344444444322211 11
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCcchhhhhcc-C-CCCCCcEEEEEecchhhhc--ccCceEEecCCCHHHHHHHHHH
Q 037045 66 DLRADIISKELNDRSYVLFLDGVSSEINFKEIGM-H-DDHGRGKVVFACRSREFCW--QADGVIHVQQLCQREAKKLFWE 141 (424)
Q Consensus 66 ~~~~~~l~~~l~~~~~LlvlD~~~~~~~~~~~~~-~-~~~~~~~iiittr~~~~~~--~~~~~~~l~~l~~~~~~~l~~~ 141 (424)
. ....+++.++++++||||||+|+..+++.+.. . ....|++||||||++.+.. .....++++.++.++|+++|.+
T Consensus 284 ~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~ 362 (1153)
T PLN03210 284 Y-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCR 362 (1153)
T ss_pred C-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHH
Confidence 1 12456778899999999999999989988832 2 4568999999999999876 4578999999999999999999
Q ss_pred HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCc
Q 037045 142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSL 221 (424)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~ 221 (424)
.+++...+...+.+.+++|++.|+|+|+||.++|+.++.+ +..+|++.++.+.. ... ..+..+|+.||+.|++
T Consensus 363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~-~~~-----~~I~~~L~~SYd~L~~ 435 (1153)
T PLN03210 363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN-GLD-----GKIEKTLRVSYDGLNN 435 (1153)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh-Ccc-----HHHHHHHHHhhhccCc
Confidence 9998755666788899999999999999999999999987 88999999999987 443 3899999999999987
Q ss_pred c-hHhHHhhhhhccCCCCCChHHHHhhhhhcc---------------hhh------hhhhccc-----------------
Q 037045 222 E-QQHCLLGWAIFSTGLELSQDYIIDGWAAQK---------------FLA------SFNKIGD----------------- 262 (424)
Q Consensus 222 ~-~k~~~~~la~fp~~~~i~~~~Li~~w~~~~---------------~~~------~~~d~~~----------------- 262 (424)
+ .|.||+++|+|+.+..++. +..|.+.+ +++ .|||+.+
T Consensus 436 ~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r 512 (1153)
T PLN03210 436 KKDKAIFRHIACLFNGEKVND---IKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGER 512 (1153)
T ss_pred cchhhhhheehhhcCCCCHHH---HHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcc
Confidence 5 9999999999988765432 22222221 111 1344411
Q ss_pred ---------------------------------------------c-------------------------------cee
Q 037045 263 ---------------------------------------------A-------------------------------HTK 266 (424)
Q Consensus 263 ---------------------------------------------~-------------------------------~l~ 266 (424)
. +++
T Consensus 513 ~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr 592 (1153)
T PLN03210 513 EFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLR 592 (1153)
T ss_pred eeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccE
Confidence 1 244
Q ss_pred EEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-CCcCChhhhcccccceeeecccccc
Q 037045 267 RLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGCLPPSISRLINLNALFLRSSCSL 345 (424)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~l~l~~~~~~ 345 (424)
.|.+.++.++.+|....+.+|+.|++.+|.++.++.. +..+++|+.|+++++. +..+| .++.+++|++|++. .|..
T Consensus 593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~-~c~~ 669 (1153)
T PLN03210 593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS-DCSS 669 (1153)
T ss_pred EEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec-CCCC
Confidence 4444455555555555567788888888888777665 5667888888888774 46665 37778888888884 6666
Q ss_pred cccCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeeeccccCCCCccc
Q 037045 346 LLQLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 346 ~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~ 398 (424)
+..+|..++.+++|+.|++++|. +..+|..+ ++++|++|++++|...+.+|.
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 77888888888888888888875 77888655 678888888888876655543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.5e-43 Score=322.72 Aligned_cols=257 Identities=28% Similarity=0.459 Sum_probs=210.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc----cccChhHHHHHHHHHh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA----KELNNDLRADIISKEL 76 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l 76 (424)
.++|+|+|++|+||||||.+++++...+.+|+.++|+.++...+...+++.|+.+++... ...+.++....+.+.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 368999999999999999999999656899999999999998888999999999998884 4567778899999999
Q ss_pred ccCcEEEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccC-CCC
Q 037045 77 NDRSYVLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHL-KKY 150 (424)
Q Consensus 77 ~~~~~LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~ 150 (424)
+++++||||||+++...|+.+ .++....+++||||||+..+.. .....+++++|+++||++||.+.++... ...
T Consensus 99 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 178 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESP 178 (287)
T ss_dssp CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----
T ss_pred ccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999887 2335567899999999998876 2267899999999999999999997653 334
Q ss_pred ccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCccccc-chhhhhHHHhhhhccCCcchHhHHhh
Q 037045 151 PDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKK-ELEEVDRFFTLVYKNLSLEQQHCLLG 229 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~i~~~l~~s~~~L~~~~k~~~~~ 229 (424)
...++.+++|++.|+|+|+||.++|++++.+.+..+|++.++.+.. ...+.. ....++.++..||+.|+++.|+||.+
T Consensus 179 ~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~ 257 (287)
T PF00931_consen 179 EDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLRESRDYDRSVFSALELSYDSLPDELRRCFLY 257 (287)
T ss_dssp TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceechhcCCccHHHHHhh
Confidence 5556789999999999999999999999776577899999998888 443332 34799999999999999999999999
Q ss_pred hhhccCCCCCChHHHHhhhhhcchhhhhh
Q 037045 230 WAIFSTGLELSQDYIIDGWAAQKFLASFN 258 (424)
Q Consensus 230 la~fp~~~~i~~~~Li~~w~~~~~~~~~~ 258 (424)
||+||++..++.+.|+++|.++||+.+.|
T Consensus 258 L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 258 LSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp GGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred CcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 99999999999999999999999998654
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-16 Score=127.77 Aligned_cols=145 Identities=24% Similarity=0.367 Sum_probs=113.2
Q ss_pred cceeEEEeeccCCCCC-CCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTL-PDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~ 341 (424)
+++++|.+++|.++.+ |.++.+.+|+.|++++|+++++|.+ ++.++.|+.|++..|++..+|..|+.++.|+.|++
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldl-- 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL-- 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhc--
Confidence 6778888888888874 5668888888888888888888887 67788888888888888888888888888888888
Q ss_pred cccccc--cCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 342 SCSLLL--QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 342 ~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
..+.+. .+|..+..+.-|+.|.++.|-+..+|+.++++++|+.|.+.+|. ....+++++.|+.|+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-------------ll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-------------LLSLPKEIGDLTRLR 176 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-------------hhhCcHHHHHHHHHH
Confidence 455443 57777777777777778887777888888888888888888876 335667788888887
Q ss_pred eeec
Q 037045 420 ELII 423 (424)
Q Consensus 420 ~L~l 423 (424)
.|.|
T Consensus 177 elhi 180 (264)
T KOG0617|consen 177 ELHI 180 (264)
T ss_pred HHhc
Confidence 7765
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=3.8e-16 Score=125.03 Aligned_cols=132 Identities=28% Similarity=0.383 Sum_probs=120.9
Q ss_pred CCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhc
Q 037045 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGR 355 (424)
Q Consensus 276 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~ 355 (424)
..+|....+++++.|.+++|+++.+|+. +..+.+|++|++++|.++++|.+++.++.|+.|++ +.+++..+|..+|.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnv--gmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNV--GMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheec--chhhhhcCccccCC
Confidence 3467778889999999999999999998 77899999999999999999999999999999999 89999999999999
Q ss_pred cCCCCEEEecCCcCc--ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 356 LQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 356 l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
+|.|..||+.+|.+. .+|..|..+..|+.|.+++|.+. ..+.++++|++|+.|.+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-------------~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------------ILPPDVGKLTNLQILSL 157 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-------------cCChhhhhhcceeEEee
Confidence 999999999999866 89998999999999999999753 56679999999999876
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=4.1e-13 Score=144.43 Aligned_cols=160 Identities=22% Similarity=0.201 Sum_probs=75.7
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~ 341 (424)
.+|++|++++|.+........+++|++|++++|.+++..+..+..+++|++|++++|.+ ..+|..++.+++|++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-- 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL-- 195 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec--
Confidence 44555555555544322223445555555555555432222244455555555555544 344445555555555555
Q ss_pred ccccc-ccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCC------------CCCc
Q 037045 342 SCSLL-LQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGS------------GEMI 407 (424)
Q Consensus 342 ~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~------------~~~~ 407 (424)
.++.+ +.+|..++.+++|+.|++++|.+. .+|..++++++|++|++++|.+.+..|..-... -...
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 22222 244555555555555555555543 444445555555555555554443333200000 0112
Q ss_pred ChhhhhccccCceeecC
Q 037045 408 SLNIISKLRLLEELIIE 424 (424)
Q Consensus 408 ~~~~l~~l~~L~~L~l~ 424 (424)
....+.++++|++|+++
T Consensus 276 ~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 276 IPPSIFSLQKLISLDLS 292 (968)
T ss_pred CchhHhhccCcCEEECc
Confidence 33466777778777764
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.40 E-value=4.8e-11 Score=108.98 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=113.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----- 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----- 76 (424)
+++.|+|++|+||||+++.+++.... ... .++|+ +....+..+++..++..++......+.......+...+
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999998741 111 12333 33345777888899988876653333333333333322
Q ss_pred ccCcEEEEEcCCCCcc--hhhhh-ccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHH
Q 037045 77 NDRSYVLFLDGVSSEI--NFKEI-GMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 77 ~~~~~LlvlD~~~~~~--~~~~~-~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l 138 (424)
.++++++|+|+++... .++.+ .+. .......|++|........ .....+++++++.+|..++
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 4678999999998864 33433 111 1122335566654332100 2245678999999999999
Q ss_pred HHHHhcccC--CCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 139 FWEVVGVHL--KKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
+...+.... ......++..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 988775331 1122345788999999999999999988765
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=1.4e-12 Score=140.34 Aligned_cols=148 Identities=26% Similarity=0.284 Sum_probs=70.8
Q ss_pred cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+.. +| .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+ ..+|..++.+++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 344444444444432 22 224444444444444444432222244444444444444444 334444444445555554
Q ss_pred ccccccc-ccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 340 RSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 340 ~~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
.++.+ +.+|..++.+++|+.|++++|.+. .+|..+.++++|++|++++|.+.+. .+..++++++
T Consensus 244 --~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------~p~~~~~l~~ 309 (968)
T PLN00113 244 --VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE------------IPELVIQLQN 309 (968)
T ss_pred --cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC------------CChhHcCCCC
Confidence 22222 234444444445555555444433 3444444445555555554443332 3346788999
Q ss_pred CceeecC
Q 037045 418 LEELIIE 424 (424)
Q Consensus 418 L~~L~l~ 424 (424)
|++|+++
T Consensus 310 L~~L~l~ 316 (968)
T PLN00113 310 LEILHLF 316 (968)
T ss_pred CcEEECC
Confidence 9999874
No 9
>PF05729 NACHT: NACHT domain
Probab=99.37 E-value=8.4e-12 Score=105.11 Aligned_cols=137 Identities=15% Similarity=0.348 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEEEEeccCCCHH---HHHHHHHHHhcccccccChhHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFWENINTDGNIR---DIQEIILERLKVNAKELNNDLRADIISK 74 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 74 (424)
|++.|+|.+|+||||+++++++....... +..++|+..+...... .+...+..+........ .. .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI--EE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh--HH---HHHH
Confidence 68999999999999999999998865333 3456777766643322 34444444433221111 11 1222
Q ss_pred Hh-ccCcEEEEEcCCCCcchh-h--------hh--c-cC-CCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045 75 EL-NDRSYVLFLDGVSSEINF-K--------EI--G-MH-DDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA 135 (424)
Q Consensus 75 ~l-~~~~~LlvlD~~~~~~~~-~--------~~--~-~~-~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~ 135 (424)
.. ..+++++|+|++++...- . .+ . ++ ...++++++||+|...... .....+++++|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 22 467999999999886431 1 11 1 12 2356899999999988733 4556899999999999
Q ss_pred HHHHHHHh
Q 037045 136 KKLFWEVV 143 (424)
Q Consensus 136 ~~l~~~~~ 143 (424)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 10
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=7.9e-11 Score=126.08 Aligned_cols=214 Identities=15% Similarity=0.216 Sum_probs=136.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccccc--------------cChh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNAKE--------------LNND 66 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~--------------~~~~ 66 (424)
+++.|+|++|.||||++.+++... . .+.|+++.. ..++..+...++..++..... .+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~----~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 106 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGK----N--NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLS 106 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhC----C--CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHH
Confidence 689999999999999999998643 1 589999865 456677778887777522210 1111
Q ss_pred HHHHHHHHHhc--cCcEEEEEcCCCCcch--hh-hhc--cCCCCCCcEEEEEecchhhhc-----ccCceEEec----CC
Q 037045 67 LRADIISKELN--DRSYVLFLDGVSSEIN--FK-EIG--MHDDHGRGKVVFACRSREFCW-----QADGVIHVQ----QL 130 (424)
Q Consensus 67 ~~~~~l~~~l~--~~~~LlvlD~~~~~~~--~~-~~~--~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~----~l 130 (424)
.....+...+. +.+++||+||++...+ .. .+. +.....+.++|||||...-.. ......++. +|
T Consensus 107 ~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f 186 (903)
T PRK04841 107 SLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAF 186 (903)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCC
Confidence 22222333332 5789999999987532 12 221 223345668889999843221 223345555 89
Q ss_pred CHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhH
Q 037045 131 CQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDR 210 (424)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 210 (424)
+.+|+.++|....+.. ...+.+.+|.+.|+|+|+++..++..+....... ......+.. . ....+..
T Consensus 187 ~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~-----~-~~~~~~~ 253 (903)
T PRK04841 187 DHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAG-----I-NASHLSD 253 (903)
T ss_pred CHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC-----C-CchhHHH
Confidence 9999999998766432 1245678899999999999999988775542100 011111110 0 0123444
Q ss_pred HH-hhhhccCCcchHhHHhhhhhcc
Q 037045 211 FF-TLVYKNLSLEQQHCLLGWAIFS 234 (424)
Q Consensus 211 ~l-~~s~~~L~~~~k~~~~~la~fp 234 (424)
.+ ...++.||++.++++...|+++
T Consensus 254 ~l~~~v~~~l~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 254 YLVEEVLDNVDLETRHFLLRCSVLR 278 (903)
T ss_pred HHHHHHHhcCCHHHHHHHHHhcccc
Confidence 43 3347899999999999999986
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.33 E-value=3.5e-13 Score=128.27 Aligned_cols=129 Identities=26% Similarity=0.371 Sum_probs=103.6
Q ss_pred cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~ 341 (424)
..|+.|++++|++++.|. ...-.++-+|++++|+++.+|...+-++.-|-+||+++|+++.+|+.+-.+.+|++|.+
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L-- 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL-- 180 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc--
Confidence 677888888888888764 46677888888888888888888788888888888888888888888888888888888
Q ss_pred ccccccc--------------------------CChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 342 SCSLLLQ--------------------------LPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 342 ~~~~~~~--------------------------lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
++|.+.. +|.++..+.+|..++++.|.+..+|..+.++++|+.|++|+|.++
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 6665532 566666777888888888888888888888888888888888763
No 12
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=7.8e-10 Score=106.82 Aligned_cols=218 Identities=17% Similarity=0.152 Sum_probs=131.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccChhHHHHHHHHHhcc-
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNNDLRADIISKELND- 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~- 78 (424)
.+.|+|++|+|||++++.+++........-..+++++....+...++..++.++.... ...+.++....+.+.+..
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999998843332234677888777788899999999987532 233455666677776653
Q ss_pred -CcEEEEEcCCCCcc------hhhhh-ccCCCCCCc--EEEEEecchhhhc---------ccCceEEecCCCHHHHHHHH
Q 037045 79 -RSYVLFLDGVSSEI------NFKEI-GMHDDHGRG--KVVFACRSREFCW---------QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 79 -~~~LlvlD~~~~~~------~~~~~-~~~~~~~~~--~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~ 139 (424)
+.++||||+++... .+..+ .......++ .+|.++....... .....+.+.+++.++..+++
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il 216 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDIL 216 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHH
Confidence 46899999998753 23333 111222232 3555555433221 22357899999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHHhc----CCchHHHHHHHHHHh----CC---cchHHHHHHHHHhhhcCcccccchhhh
Q 037045 140 WEVVGVHLKKYPDIELVADSIVKEC----GGMPYMLKLIGKELA----NQ---SEVAIWRATADELRLTSSEEKKELEEV 208 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~I~~~~----~g~Plai~~~a~~l~----~~---~~~~~~~~~~~~l~~~~~~~~~~~~~i 208 (424)
..++..........++.+..+++.+ +..+.++.++-.+.. .. -+.+......+...
T Consensus 217 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~------------- 283 (394)
T PRK00411 217 KDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE------------- 283 (394)
T ss_pred HHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------------
Confidence 9887432111122234445555554 446666665543221 11 12233333322221
Q ss_pred hHHHhhhhccCCcchHhHHhhhhhc
Q 037045 209 DRFFTLVYKNLSLEQQHCLLGWAIF 233 (424)
Q Consensus 209 ~~~l~~s~~~L~~~~k~~~~~la~f 233 (424)
.......+..||.+.|.++..++..
T Consensus 284 ~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 284 IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1223456788988888887776644
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=4.6e-13 Score=127.44 Aligned_cols=145 Identities=20% Similarity=0.336 Sum_probs=105.5
Q ss_pred cceeEEEeeccCCCCCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~ 341 (424)
.+|+.++++.|.++.+|.+ ..+++|+.|++++|.++++... .....+|+.|++++|.+..+|..+++++.|+.|.+
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~-- 298 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA-- 298 (1255)
T ss_pred hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccchHHHhhhHHHHHHHh--
Confidence 5777788888888777765 7777888888888888766554 44566777777777777777777777777777777
Q ss_pred cccccc--cCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 342 SCSLLL--QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 342 ~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
.+|.+. .+|+.+|++..|..+.+.+|.+.-.|.++..+.+|+.|.+++|. ....++.+.-|+.|+
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-------------LiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-------------LITLPEAIHLLPDLK 365 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-------------eeechhhhhhcCCcc
Confidence 666654 67777777777777777777777777777777777777777775 334555666667777
Q ss_pred eeec
Q 037045 420 ELII 423 (424)
Q Consensus 420 ~L~l 423 (424)
.|++
T Consensus 366 vLDl 369 (1255)
T KOG0444|consen 366 VLDL 369 (1255)
T ss_pred eeec
Confidence 6665
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=9.3e-12 Score=103.88 Aligned_cols=120 Identities=26% Similarity=0.313 Sum_probs=29.4
Q ss_pred ceeEEEeeccCCCCCCCCc-CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhh-hcccccceeeecc
Q 037045 264 HTKRLSLFGFPSSTLPDMP-NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRS 341 (424)
Q Consensus 264 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~l~l~~ 341 (424)
.++.|++.+|.++.+.... .+.+|+.|++++|.++.+.. +..++.|+.|++++|++..+.+.+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L-- 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL-- 95 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE---
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC--
Confidence 3444555555555444332 34445555555555554433 344455555555555554443322 23445555555
Q ss_pred cccccccCC--hhhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeee
Q 037045 342 SCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRV 387 (424)
Q Consensus 342 ~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l 387 (424)
++|.+.++. ..+..+++|+.|++.+|+++..+. -+..+|+|+.|+-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 444444332 233444455555555554443322 1344444444443
No 15
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.17 E-value=1.9e-09 Score=107.06 Aligned_cols=216 Identities=16% Similarity=0.177 Sum_probs=147.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc--------------cccChh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA--------------KELNND 66 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~--------------~~~~~~ 66 (424)
|.+.|.-|+|.|||||+.+++... ..-..+.|+++.. ..++..+...++..++.-. ...+..
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~ 114 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLE 114 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHH
Confidence 689999999999999999999833 3445689999876 4678889999988887332 122222
Q ss_pred HHHHHHHHHhcc--CcEEEEEcCCCCcch---hhhhc--cCCCCCCcEEEEEecchhhhc-----ccCceEEec----CC
Q 037045 67 LRADIISKELND--RSYVLFLDGVSSEIN---FKEIG--MHDDHGRGKVVFACRSREFCW-----QADGVIHVQ----QL 130 (424)
Q Consensus 67 ~~~~~l~~~l~~--~~~LlvlD~~~~~~~---~~~~~--~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~----~l 130 (424)
.....+...+.. +++.+||||..-..+ -+.+. +...-++-..|+|||++.-.. -.+..++++ .|
T Consensus 115 ~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf 194 (894)
T COG2909 115 SLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRF 194 (894)
T ss_pred HHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcC
Confidence 233344444433 589999999765432 22221 123445668999999877655 334444555 58
Q ss_pred CHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhH
Q 037045 131 CQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDR 210 (424)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 210 (424)
+.+|+.+||....+.. ..+..++.+.+...|.+-|+.+++=..+.+.+.+.-...+..... .+..
T Consensus 195 ~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~----------~l~d 259 (894)
T COG2909 195 DTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAAS----------HLSD 259 (894)
T ss_pred ChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHH----------HHHH
Confidence 9999999998876433 335568899999999999999999988854444433332222211 2222
Q ss_pred -HHhhhhccCCcchHhHHhhhhhccC
Q 037045 211 -FFTLVYKNLSLEQQHCLLGWAIFST 235 (424)
Q Consensus 211 -~l~~s~~~L~~~~k~~~~~la~fp~ 235 (424)
...--++.||++.|.++..+|+++.
T Consensus 260 YL~eeVld~Lp~~l~~FLl~~svl~~ 285 (894)
T COG2909 260 YLVEEVLDRLPPELRDFLLQTSVLSR 285 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence 2344678899999999999999764
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.16 E-value=2.7e-11 Score=114.75 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=106.3
Q ss_pred cceeEEEeeccCCCCCCCCcCcc-cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCC-EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~ 340 (424)
++|+.+++-+|.++.+|.++..+ +|+.|++.+|.++.+..+.+..++.|+.||++.|.+..+| ++|..-.++.+|++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L- 180 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL- 180 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee-
Confidence 88899999999999988875554 4999999999999888887888889999999999887777 45666678899999
Q ss_pred ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccC
Q 037045 341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVEN 392 (424)
Q Consensus 341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~ 392 (424)
+.|+++.+-. .|..+.+|.+|.++.|+++.+|.. |.++++|+.|++..|.+
T Consensus 181 -a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 181 -ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred -ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 8888887754 577778888899999998888876 67788999998888865
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.12 E-value=2.1e-11 Score=115.41 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=59.5
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
+.||+|+++.|.++++| .+..-.+++.|++++|.++.+....|..+.+|..|.+++|+++.+|+ .|..+++|+.|++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 44555555555555533 22333455555555555555444445555555555555555555543 2334555555555
Q ss_pred cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045 340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE 391 (424)
Q Consensus 340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~ 391 (424)
..|++... -..|..+++|+.+.+..|.++.+-++ |..|.++.+|++..|.
T Consensus 229 --nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 229 --NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred --cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 44444433 12333444444444444444444333 3444444444444443
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.11 E-value=7.3e-09 Score=94.78 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=122.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-..+|||+|+||||||+-++... ...|. .++...+-.+-++++++.- . .....+++++
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~--~~~f~-----~~sAv~~gvkdlr~i~e~a-------------~--~~~~~gr~ti 107 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTT--NAAFE-----ALSAVTSGVKDLREIIEEA-------------R--KNRLLGRRTI 107 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhh--CCceE-----EeccccccHHHHHHHHHHH-------------H--HHHhcCCceE
Confidence 35689999999999999999987 45553 3333222222222222211 0 1122478999
Q ss_pred EEEcCCCCcch-hhhhccCCCCCCcEEEE--Eecchhhhc-----ccCceEEecCCCHHHHHHHHHHHhcccCC-----C
Q 037045 83 LFLDGVSSEIN-FKEIGMHDDHGRGKVVF--ACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVVGVHLK-----K 149 (424)
Q Consensus 83 lvlD~~~~~~~-~~~~~~~~~~~~~~iii--ttr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~-----~ 149 (424)
|++|+++...- .++..+|..+.|.-|+| ||.+..... +...++++++|+.++..+++.+.+..... .
T Consensus 108 LflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~ 187 (436)
T COG2256 108 LFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQI 187 (436)
T ss_pred EEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccc
Confidence 99999998642 23334667777887776 666655544 88899999999999999999985533311 1
Q ss_pred CccHHHHHHHHHHhcCCchHH----HHHHHHHHhCCc--chHHHHHHHHHhhhcCcccccch-hhhhHHHhhhhccCCcc
Q 037045 150 YPDIELVADSIVKECGGMPYM----LKLIGKELANQS--EVAIWRATADELRLTSSEEKKEL-EEVDRFFTLVYKNLSLE 222 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Pla----i~~~a~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~i~~~l~~s~~~L~~~ 222 (424)
....++....+++.+.|.... +++++..-+... ..+..++.+.+-.. ..++..+. .++-.++.-|...-+++
T Consensus 188 ~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 188 IVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred ccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCcC
Confidence 113355678899999997743 333343333331 23444444444444 33333223 67777777777766666
Q ss_pred h
Q 037045 223 Q 223 (424)
Q Consensus 223 ~ 223 (424)
+
T Consensus 267 A 267 (436)
T COG2256 267 A 267 (436)
T ss_pred H
Confidence 4
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=2.1e-11 Score=110.54 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=92.9
Q ss_pred cceeEEEeeccCCCCCCC-------------------------CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEcc
Q 037045 263 AHTKRLSLFGFPSSTLPD-------------------------MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLH 317 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 317 (424)
.-++.+++++|++.++|. ...+++|+.|++++|.+.++|.+ +..+-.||.|+++
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLS 466 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheeccc
Confidence 346677777776666553 25666777777777777777777 4556667777777
Q ss_pred CCCCCcCChhhhcccccceeeecccccccccCChh-hhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 318 ETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 318 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
.|+|..+|..+-.+.-++++-. +++.++.++.+ ++++.+|.+||+.+|.+..+|+.+++|++|++|.+++|+|.
T Consensus 467 ~NrFr~lP~~~y~lq~lEtlla--s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFRMLPECLYELQTLETLLA--SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccchHHHhhHHHHHHHHh--ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 7777777765555565666655 66777777654 78888888888888888888888888888888888888764
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=2.2e-10 Score=95.64 Aligned_cols=139 Identities=22% Similarity=0.262 Sum_probs=57.4
Q ss_pred eeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhc-ccCCCcEEEccCCCCCcCChhhhcccccceeeeccccccccc
Q 037045 270 LFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ 348 (424)
Q Consensus 270 l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~ 348 (424)
+..+.++..+...++..++.|++++|.++.+.. +. .+.+|+.|++++|.+..++ .+..+++|++|++ ++|.+.+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L--~~N~I~~ 78 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDL--SNNRISS 78 (175)
T ss_dssp --------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE----SS---S
T ss_pred ccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhccc--CCCCCCc
Confidence 444556666777777889999999999998754 43 5789999999999998885 4778999999999 9999999
Q ss_pred CChhh-hccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 349 LPAEI-GRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 349 lp~~~-~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++..+ ..+++|+.|.+++|+|..+- ..+..+++|+.|++.+|++... .......+..+++|+.||
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---------~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK---------KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS---------TTHHHHHHHH-TT-SEET
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch---------hhHHHHHHHHcChhheeC
Confidence 97665 46899999999999987553 3478999999999999987543 556777889999999886
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=1.8e-11 Score=110.98 Aligned_cols=147 Identities=22% Similarity=0.292 Sum_probs=101.6
Q ss_pred cceeEEEeeccCCCCCCC-C---cCcccccEEEccCCCCCCCChH-----------------------HhcccCCCcEEE
Q 037045 263 AHTKRLSLFGFPSSTLPD-M---PNCCEILTLILEGKRLEKLPTS-----------------------FFDYMCHLQLLD 315 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~---~~~~~L~~L~l~~~~l~~~~~~-----------------------~~~~~~~L~~L~ 315 (424)
-+.+.|++++-+++.+|. + +.-..++..++++|++.++|.. .+++++.|..|+
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 567889999999999874 2 3333478889999888766654 244555566666
Q ss_pred ccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCC
Q 037045 316 LHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 316 l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~ 394 (424)
+++|-+.++|..++.+..|+.+++ +.++...+|.....+..+.++-.+.|++..+|.. +.+|.+|.+|++..|.+
T Consensus 442 L~NN~Ln~LP~e~~~lv~Lq~Lnl--S~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-- 517 (565)
T KOG0472|consen 442 LSNNLLNDLPEEMGSLVRLQTLNL--SFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-- 517 (565)
T ss_pred cccchhhhcchhhhhhhhhheecc--cccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch--
Confidence 665555556655555555666666 5555555565555555555555555666656544 88999999999999874
Q ss_pred CcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 395 NHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
-..++.+|+|++|++|.|.
T Consensus 518 -----------q~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 518 -----------QQIPPILGNMTNLRHLELD 536 (565)
T ss_pred -----------hhCChhhccccceeEEEec
Confidence 3677899999999999874
No 22
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=3.7e-09 Score=94.23 Aligned_cols=169 Identities=16% Similarity=0.238 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHH---------HHHHHhccccc-----------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQE---------IILERLKVNAK----------- 61 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~~~----------- 61 (424)
+.+.|+|+.|+|||+|++++.+... ..-..++|+............. .+...+.....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 5789999999999999999999883 2222455555444332221111 11122211110
Q ss_pred ccChhHHHHHHHHHhc--cCcEEEEEcCCCCcc-hh---hhh-----cc-C--CCCCCcEEEEEecchhhhc--------
Q 037045 62 ELNNDLRADIISKELN--DRSYVLFLDGVSSEI-NF---KEI-----GM-H--DDHGRGKVVFACRSREFCW-------- 119 (424)
Q Consensus 62 ~~~~~~~~~~l~~~l~--~~~~LlvlD~~~~~~-~~---~~~-----~~-~--~~~~~~~iiittr~~~~~~-------- 119 (424)
..........+.+.+. +++++||+|+++... .. ..+ .+ . ....+..+|++........
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~ 178 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSP 178 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTST
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCc
Confidence 1122223333333343 246999999998776 11 111 11 1 2233444455544322211
Q ss_pred --ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045 120 --QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 120 --~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~ 173 (424)
.....+.+++|+.+++++++....... ..-+..++..++|++.++|+|..|..
T Consensus 179 ~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 179 LFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred cccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445559999999999999999976544 11123456679999999999998864
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=6.3e-08 Score=92.58 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=129.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccC-CC--C-ceEEEEEeccCCCHHHHHHHHHHHhc---ccc--cccChhHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGES-RR--F-DIIFWENINTDGNIRDIQEIILERLK---VNA--KELNNDLRADIIS 73 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~-~~--f-~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~--~~~~~~~~~~~l~ 73 (424)
.+.|+|++|+|||++++.+++..... .. . -..+|+++....+...++..++.++. ... ...+..+....+.
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLY 121 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence 57899999999999999999876321 11 1 24678888877788899999999984 221 2223444455555
Q ss_pred HHhc--cCcEEEEEcCCCCcc-----hhhhh-cc--CCCC--CCcEEEEEecchhhhc---------ccCceEEecCCCH
Q 037045 74 KELN--DRSYVLFLDGVSSEI-----NFKEI-GM--HDDH--GRGKVVFACRSREFCW---------QADGVIHVQQLCQ 132 (424)
Q Consensus 74 ~~l~--~~~~LlvlD~~~~~~-----~~~~~-~~--~~~~--~~~~iiittr~~~~~~---------~~~~~~~l~~l~~ 132 (424)
+.+. +++++||||+++... .+..+ .. .... .+..+|.+++...... .....+.+.+++.
T Consensus 122 ~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~ 201 (365)
T TIGR02928 122 KELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA 201 (365)
T ss_pred HHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH
Confidence 5553 457899999998762 12222 11 1111 2334454554332211 2235689999999
Q ss_pred HHHHHHHHHHhccc---CCCCccHHHHHHHHHHhcCCchHHHHHHH-HHH----hCC---cchHHHHHHHHHhhhcCccc
Q 037045 133 REAKKLFWEVVGVH---LKKYPDIELVADSIVKECGGMPYMLKLIG-KEL----ANQ---SEVAIWRATADELRLTSSEE 201 (424)
Q Consensus 133 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~I~~~~~g~Plai~~~a-~~l----~~~---~~~~~~~~~~~~l~~~~~~~ 201 (424)
++..+++..++... ..-.+..-+.+..++..+.|.+..+..+. ... ... -+.+......+.+.
T Consensus 202 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~------ 275 (365)
T TIGR02928 202 EELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE------ 275 (365)
T ss_pred HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH------
Confidence 99999999887521 11112222334456666678884433222 111 111 12222222222221
Q ss_pred ccchhhhhHHHhhhhccCCcchHhHHhhhhhcc--CCCCCChHHHHh
Q 037045 202 KKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFS--TGLELSQDYIID 246 (424)
Q Consensus 202 ~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp--~~~~i~~~~Li~ 246 (424)
..........|+.+.+.++..++..- ++..+....+..
T Consensus 276 -------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~ 315 (365)
T TIGR02928 276 -------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYE 315 (365)
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 12233456778888777776665332 233455555554
No 24
>PF13173 AAA_14: AAA domain
Probab=98.96 E-value=3.2e-09 Score=85.06 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+++.|.|+-|+||||++++++++.. ....++|+++...........+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhccCCc
Confidence 5899999999999999999999883 4456788887665331111000 12233333334788
Q ss_pred EEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~ 134 (424)
+++||+++...+|... .+.+.....+|++|+.+..... +....++|.+|+.+|
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 9999999999888777 3335456789999998766653 455677888888766
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=8.3e-11 Score=117.03 Aligned_cols=125 Identities=28% Similarity=0.409 Sum_probs=100.4
Q ss_pred cceeEEEeeccCCCC--CCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSST--LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~ 340 (424)
+.|+.|++.+|.++. +|-+.+..+|+.|++++|.++.+|+.++..+..|+.|++++|++..+|..+-.++.|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a- 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA- 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh-
Confidence 567778888888887 67778888888888888888888888888888888888888888888888888888888887
Q ss_pred ccccccccCChhhhccCCCCEEEecCCcCc--ccchhhhcCCCCCEeeecccc
Q 037045 341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~~n~ 391 (424)
..|.+..+| .+..++.|+.+|++.|.++ .+|..... ++|++|++++|.
T Consensus 438 -hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 -HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred -cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 778888888 6778888888888888876 44443222 688888888885
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.95 E-value=2.9e-08 Score=93.06 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc----cccC--hhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA----KELN--NDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~--~~~~~~~l~~~ 75 (424)
+.+.|+|++|+|||++|+.+++... ..+ .++..... .....+..++..+.... ++.+ .......+...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~~~-~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~ 125 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGPAL-EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPA 125 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecccc-cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHH
Confidence 3578999999999999999999883 221 12222111 11122223333322211 0000 01112223333
Q ss_pred hccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCc
Q 037045 76 LNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYP 151 (424)
Q Consensus 76 l~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 151 (424)
+.+.+..+++|+......+... .+ ..+-|..|++...+.. .....+++++++.++..+++.+.+... ...
T Consensus 126 ~e~~~~~~~l~~~~~~~~~~~~-l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~--~~~ 199 (328)
T PRK00080 126 MEDFRLDIMIGKGPAARSIRLD-LP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL--GVE 199 (328)
T ss_pred HHhcceeeeeccCccccceeec-CC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc--CCC
Confidence 3344444444443332211110 11 1334555666444333 234578999999999999999888764 223
Q ss_pred cHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCcchHhHHh-hh
Q 037045 152 DIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLL-GW 230 (424)
Q Consensus 152 ~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~-~l 230 (424)
..++.+..|++.|+|.|..+..+...+.. |.... .. ..............+...+..|++..+..+. ..
T Consensus 200 ~~~~~~~~ia~~~~G~pR~a~~~l~~~~~------~a~~~---~~-~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~ 269 (328)
T PRK00080 200 IDEEGALEIARRSRGTPRIANRLLRRVRD------FAQVK---GD-GVITKEIADKALDMLGVDELGLDEMDRKYLRTII 269 (328)
T ss_pred cCHHHHHHHHHHcCCCchHHHHHHHHHHH------HHHHc---CC-CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHH
Confidence 34567899999999999766555543221 11100 00 0011111123334455667778777777776 45
Q ss_pred hhccCC
Q 037045 231 AIFSTG 236 (424)
Q Consensus 231 a~fp~~ 236 (424)
..|+.+
T Consensus 270 ~~~~~~ 275 (328)
T PRK00080 270 EKFGGG 275 (328)
T ss_pred HHcCCC
Confidence 555544
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.94 E-value=8.6e-11 Score=116.94 Aligned_cols=146 Identities=24% Similarity=0.307 Sum_probs=116.6
Q ss_pred cceeEEEeeccCCCCCCC-------------------------C--cCcccccEEEccCCCCCC-CChHHhcccCCCcEE
Q 037045 263 AHTKRLSLFGFPSSTLPD-------------------------M--PNCCEILTLILEGKRLEK-LPTSFFDYMCHLQLL 314 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-------------------------~--~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L 314 (424)
..|++|+++.|.+..+|. . ...+.|+.|.+.+|.+++ ..+. +..+++|++|
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVL 388 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVL 388 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeee
Confidence 677777777776666543 1 233447778888888885 2232 7789999999
Q ss_pred EccCCCCCcCCh-hhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 315 DLHETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 315 ~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
++++|++..+|. .+.++..|+.|++ ++|.+..+|.++..++.|++|...+|++..+| ++.+++.|+.++++.|.+.
T Consensus 389 hLsyNrL~~fpas~~~kle~LeeL~L--SGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKLEELEELNL--SGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eecccccccCCHHHHhchHHhHHHhc--ccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 999999999985 5789999999999 99999999999999999999999999999999 7999999999999999764
Q ss_pred CCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 394 GNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.. ...+.+.+ ++|++|++|
T Consensus 466 ~~-----------~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 466 EV-----------TLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred hh-----------hhhhhCCC-cccceeecc
Confidence 32 22222222 788888875
No 28
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.92 E-value=2.7e-09 Score=86.04 Aligned_cols=113 Identities=22% Similarity=0.307 Sum_probs=81.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC---CCCceEEEEEeccCCCHHHHHHHHHHHhcccccc-cChhHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES---RRFDIIFWENINTDGNIRDIQEIILERLKVNAKE-LNNDLRADIISKELN 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 77 (424)
+++.|+|++|+|||++++++++..... ..-..++|+.+....+...+.+.++++++..... .+..+....+.+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999987310 1134578999999889999999999999988754 667777788888887
Q ss_pred cCcE-EEEEcCCCCc-c--hhhhhccCCCCCCcEEEEEecc
Q 037045 78 DRSY-VLFLDGVSSE-I--NFKEIGMHDDHGRGKVVFACRS 114 (424)
Q Consensus 78 ~~~~-LlvlD~~~~~-~--~~~~~~~~~~~~~~~iiittr~ 114 (424)
..+. +||+|+++.. . .++.+.--....+.++|+..+.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 7655 9999999886 3 2333311133667778777665
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.92 E-value=4.5e-08 Score=91.06 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc----c--ccChhHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA----K--ELNNDLRADIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~l~~~l 76 (424)
.+.++|++|+|||+||+.+++... ..+ ..+..........+. ..+..++... + ..-.......+...+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~l~-~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~ 105 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGDLA-AILTNLEEGDVLFIDEIHRLSPAVEELLYPAM 105 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchhHH-HHHHhcccCCEEEEehHhhhCHHHHHHhhHHH
Confidence 478999999999999999999873 222 122221111222222 2222222211 0 000111223344444
Q ss_pred ccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCcc
Q 037045 77 NDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPD 152 (424)
Q Consensus 77 ~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~ 152 (424)
.+.+..+|+++......+... ..+.+-|..||+...+.. .....+.+++++.++..+++.+.+... ....
T Consensus 106 ~~~~~~~v~~~~~~~~~~~~~----~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~--~~~~ 179 (305)
T TIGR00635 106 EDFRLDIVIGKGPSARSVRLD----LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL--NVEI 179 (305)
T ss_pred hhhheeeeeccCccccceeec----CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh--CCCc
Confidence 445555555554333222211 112344555666544433 234567999999999999999888654 2233
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHH
Q 037045 153 IELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 153 ~~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
.++.+..|++.|+|.|..+..++.
T Consensus 180 ~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 180 EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CHHHHHHHHHHhCCCcchHHHHHH
Confidence 356778899999999977655554
No 30
>PRK06893 DNA replication initiation factor; Validated
Probab=98.90 E-value=1.9e-08 Score=89.14 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+|||+|++.+++... .....+.|+.+... .....+ +.+.+. +.-+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~---~~~~~~--------------------~~~~~~-~~dl 94 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKS---QYFSPA--------------------VLENLE-QQDL 94 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHh---hhhhHH--------------------HHhhcc-cCCE
Confidence 578999999999999999999873 23334677776421 001111 111111 2348
Q ss_pred EEEcCCCCc---chhhhhc---cC-CCCCCcEEEE-Eecc---------hhhhc--ccCceEEecCCCHHHHHHHHHHHh
Q 037045 83 LFLDGVSSE---INFKEIG---MH-DDHGRGKVVF-ACRS---------REFCW--QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 83 lvlD~~~~~---~~~~~~~---~~-~~~~~~~iii-ttr~---------~~~~~--~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
|++||++.. ..|+... +. ....+..+|+ |++. ..+.. .....+++++++.++.++++++.+
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 999999874 2333221 11 1223455544 4443 12222 556788999999999999999888
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
... .-.-.++....|++.+.|....+..+-..+
T Consensus 175 ~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 175 YQR--GIELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 643 233346678889999998877766555433
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=3.1e-10 Score=107.37 Aligned_cols=127 Identities=26% Similarity=0.322 Sum_probs=114.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
..++.++++.|++..+|.-.+...|+.|.+++|+++..|.+ ++....|..|+.+.|.+..+|..++++.+|+.|++ .
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v--r 197 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV--R 197 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH--h
Confidence 56788899999999988776777799999999999999988 66788899999999999999999999999999999 8
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
.+.+..+|..+.. -.|..||+++|.+..+|-.|.+|+.|++|.|..|++.
T Consensus 198 Rn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 198 RNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 8899999999884 4589999999999999999999999999999999864
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.7e-10 Score=109.07 Aligned_cols=142 Identities=26% Similarity=0.302 Sum_probs=122.9
Q ss_pred ceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 264 HTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 264 ~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
.|+.+.+..|.+..+|. ...+..|++|+++.|.++..|.. ++.++ |++|-+++|++..+|..++.+..|..|++ +
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~--s 174 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV--S 174 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhh--h
Confidence 34556667778887664 48889999999999999999988 56665 99999999999999999999999999999 8
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
+|.+..+|+.++.+.+|+.|.+..|.+..+|.++..++ |..|++|.|++. ..+-.+.+|+.|++|-
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-------------~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-------------YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-------------ecchhhhhhhhheeee
Confidence 99999999999999999999999999999999988777 999999999753 4556889999999886
Q ss_pred c
Q 037045 423 I 423 (424)
Q Consensus 423 l 423 (424)
|
T Consensus 241 L 241 (722)
T KOG0532|consen 241 L 241 (722)
T ss_pred e
Confidence 5
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=3.3e-10 Score=99.19 Aligned_cols=151 Identities=22% Similarity=0.248 Sum_probs=119.9
Q ss_pred CChHHHHhhhhhcchhhh-hhhccc---cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcE
Q 037045 239 LSQDYIIDGWAAQKFLAS-FNKIGD---AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQL 313 (424)
Q Consensus 239 i~~~~Li~~w~~~~~~~~-~~d~~~---~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 313 (424)
+|.+.+.+.|..|+-... |--... .-|+.|++++|.++.+.. +.-.+.++.|+++.|.+..+.. +..+++|+.
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~ 333 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQL 333 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceE
Confidence 455666667766654322 100011 568889999999998764 4667899999999999998877 678999999
Q ss_pred EEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeecccc
Q 037045 314 LDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 314 L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~ 391 (424)
||+++|.+..+...-.++.++.+|++ +.|.+.++. .++++.+|..||+++|+|..+- ..|+++++|.++.+.+|+
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~L--a~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKL--AQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeeh--hhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 99999999888777788999999999 888888774 5888999999999999988552 358999999999999998
Q ss_pred CCC
Q 037045 392 NVG 394 (424)
Q Consensus 392 ~~~ 394 (424)
+.+
T Consensus 411 l~~ 413 (490)
T KOG1259|consen 411 LAG 413 (490)
T ss_pred ccc
Confidence 643
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.82 E-value=1.1e-08 Score=104.74 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=50.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.++.+|... +.+|+.|++++|.++.+|... ..+|+.|++++|.+..+|..+. .+|++|++ +
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L--s 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDL--F 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEEC--c
Confidence 34555555555555544321 235555555555555555431 1245555555555555554332 34555555 4
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccch
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS 374 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 374 (424)
++.+..+|..+. .+|+.|++++|.++.+|.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcc
Confidence 455555554332 245555555555544443
No 35
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.81 E-value=9.6e-07 Score=79.85 Aligned_cols=150 Identities=14% Similarity=0.181 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
.-+.+||++|+||||||+-+....+... ..||..+.......-++.++++-.. ...+.+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~--------------~~~l~krkT 224 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN--------------EKSLTKRKT 224 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH--------------HHhhhccee
Confidence 4578999999999999999999885332 5677776655444445555443221 123457899
Q ss_pred EEEEcCCCCcch-hhhhccCCCCCCcEEEE--Eecchhhhc-----ccCceEEecCCCHHHHHHHHHHHhc---cc----
Q 037045 82 VLFLDGVSSEIN-FKEIGMHDDHGRGKVVF--ACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVVG---VH---- 146 (424)
Q Consensus 82 LlvlD~~~~~~~-~~~~~~~~~~~~~~iii--ttr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~---~~---- 146 (424)
+|.+|++..... .+...+|....|.-++| ||.+..+.. ....++.++.|..++...++.+... ..
T Consensus 225 ilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~ 304 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPT 304 (554)
T ss_pred EEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccC
Confidence 999999987532 22224677777776666 776665544 8899999999999999999887442 11
Q ss_pred -CCCC---ccHHHHHHHHHHhcCCchH
Q 037045 147 -LKKY---PDIELVADSIVKECGGMPY 169 (424)
Q Consensus 147 -~~~~---~~~~~~~~~I~~~~~g~Pl 169 (424)
..+. ...+.+...++..|.|...
T Consensus 305 ~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 305 DPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred CCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 2335567788888999763
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=9.4e-09 Score=104.74 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=61.0
Q ss_pred CCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeec
Q 037045 309 CHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388 (424)
Q Consensus 309 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~ 388 (424)
.+|+.|++++|.+..+|.. .++|+.|++ +++.+..+|... .+|+.|++++|+++.+|..+.++++|+.++++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdL--S~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMV--SGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEc--cCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence 3577777777777666643 356778888 777777777533 35778889999999999889999999999999
Q ss_pred cccCCCC
Q 037045 389 RVENVGN 395 (424)
Q Consensus 389 ~n~~~~~ 395 (424)
+|++.+.
T Consensus 454 ~N~Ls~~ 460 (788)
T PRK15387 454 GNPLSER 460 (788)
T ss_pred CCCCCch
Confidence 9988765
No 37
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.76 E-value=3.7e-08 Score=107.19 Aligned_cols=88 Identities=26% Similarity=0.327 Sum_probs=50.2
Q ss_pred CCcEEEccCCCC-CcCChhhhcccccceeeecccccccccCChhh--------------------hccCCCCEEEecCCc
Q 037045 310 HLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLLLQLPAEI--------------------GRLQKLEILDVSHTK 368 (424)
Q Consensus 310 ~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~--------------------~~l~~L~~L~l~~~~ 368 (424)
+|+.|++++|.. ..+|..++.+++|+.|+++ .|+.+..+|..+ ....+|+.|++++|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls-~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE-NCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECC-CCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 444445544432 4455555555555555552 333344444322 012356677777777
Q ss_pred CcccchhhhcCCCCCEeeeccccCCCCccc
Q 037045 369 VQCLPSEIGQLIELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 369 i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~ 398 (424)
+..+|..+..+++|+.|++++|.....+|.
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 777887788888888888888765544444
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.1e-09 Score=95.86 Aligned_cols=123 Identities=26% Similarity=0.297 Sum_probs=104.9
Q ss_pred ccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEe
Q 037045 285 CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDV 364 (424)
Q Consensus 285 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l 364 (424)
..|+.+++++|.++.+..+ ..-.|.+++|+++.|.+... .++..+++|+.|++ ++|.+.++-.+-.++.++++|.+
T Consensus 284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDL--S~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDL--SGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhh-hhhccceeEEeccccceeee-hhhhhcccceEeec--ccchhHhhhhhHhhhcCEeeeeh
Confidence 3488999999999988876 56678999999999988555 33778999999999 88988888776677888999999
Q ss_pred cCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 365 SHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 365 ~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
+.|.+.++ ++++.+=+|..|++++|.+. .+..+..+|+|++|++|.+
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie-----------~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIE-----------ELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchh-----------hHHHhcccccccHHHHHhh
Confidence 99999888 57899999999999999754 6688889999999999876
No 39
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.76 E-value=9.6e-08 Score=84.78 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=92.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|+.|+|||+||+.+++... ......+++++..-.+.. ..+ ...+.+ .-
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~~---~~~--------------------~~~~~~-~~ 92 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQAD---PEV--------------------LEGLEQ-AD 92 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHhH---HHH--------------------Hhhccc-CC
Confidence 3588999999999999999999873 333456676654432100 011 111222 23
Q ss_pred EEEEcCCCCcc---h-hhhh-c-cC-CCCCCcEEEEEecchhh---------hc--ccCceEEecCCCHHHHHHHHHHHh
Q 037045 82 VLFLDGVSSEI---N-FKEI-G-MH-DDHGRGKVVFACRSREF---------CW--QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 82 LlvlD~~~~~~---~-~~~~-~-~~-~~~~~~~iiittr~~~~---------~~--~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
+|||||++... . .+.+ . +. ....+..+|+|++.... .. .....+++.++++++...++....
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 89999998753 2 2222 1 11 11234578888874321 11 224688999999999999998765
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~ 177 (424)
... .....++..+.|++.+.|++..+..+...
T Consensus 173 ~~~--~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 173 ARR--GLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 432 12333567788888999999877666543
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.74 E-value=1e-08 Score=104.90 Aligned_cols=119 Identities=25% Similarity=0.356 Sum_probs=65.2
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.++.+|... +.+|+.|++++|+++.+|... .++|+.|++++|.+..+|..+ .++|++|++ .
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~L--s 333 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLTALPETL--PPGLKTLEA--G 333 (754)
T ss_pred CCCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccc---hhhHHHHHhcCCccccCCccc--cccceeccc--c
Confidence 46777888887777765421 246777777777777666432 124555555555555454332 234555555 4
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
++.+..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+.
T Consensus 334 ~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 334 ENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC
Confidence 444555554332 355555555555555554332 34555555555443
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=5.7e-09 Score=100.87 Aligned_cols=144 Identities=31% Similarity=0.402 Sum_probs=107.6
Q ss_pred ceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 264 HTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 264 ~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
+++.|++++|.+..+| ....+++|+.|++++|.++.++.. ....+.|+.|++++|.+..+|.....+..|+++.+ .
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~--~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL--S 217 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhh--c
Confidence 6788888888888775 567788888888888888887775 23567788888888888888776666777888887 6
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+...+..+..+.++..+.+.+|++..+|..++.++.|++|+++.|.+ ..+..++.+.+|+.|+
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i--------------~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI--------------SSISSLGSLTNLRELD 283 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc--------------cccccccccCccCEEe
Confidence 66666667777777777777777777776666677888888888888753 3344477777777777
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 284 ~s 285 (394)
T COG4886 284 LS 285 (394)
T ss_pred cc
Confidence 64
No 42
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.73 E-value=9.3e-07 Score=85.93 Aligned_cols=201 Identities=13% Similarity=0.085 Sum_probs=120.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|..|+|||+|++.+++.......-..+++++ .+++...+...++... .....+.+.++. .-+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~~-~dv 209 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEICQ-NDV 209 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhcc-CCE
Confidence 478999999999999999999763222223455543 4566677766655311 122334443433 347
Q ss_pred EEEcCCCCcc---h-hhhh--ccC-CCCCCcEEEEEecchh--hh---c------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEI---N-FKEI--GMH-DDHGRGKVVFACRSRE--FC---W------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~---~-~~~~--~~~-~~~~~~~iiittr~~~--~~---~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
||+||++... . .+.+ .+. ....+..||+|+.... .. . .....+.+++++.++..+++.+.+.
T Consensus 210 LiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 210 LIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 8899998653 1 2222 111 2334557888865321 11 1 5667888999999999999999886
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh---------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhh
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA---------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLV 215 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s 215 (424)
.........++....|++.+.|.|..+..+...+. ..-+.+..+.++.++.. .....-..+.|..++...
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~-~~~~~~t~~~I~~~Va~~ 368 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPT-SKLGILNVKKIKEVVSEK 368 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccc-cccCCCCHHHHHHHHHHH
Confidence 43211234477889999999999988876664431 11344555555554422 111112335666666555
Q ss_pred hc
Q 037045 216 YK 217 (424)
Q Consensus 216 ~~ 217 (424)
|+
T Consensus 369 ~~ 370 (450)
T PRK14087 369 YG 370 (450)
T ss_pred cC
Confidence 54
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=1.6e-06 Score=83.88 Aligned_cols=151 Identities=14% Similarity=0.190 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH-hccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE-LNDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~ 81 (424)
-+.|+|++|+||||+|+.+++.. ...| +.++......+-.+.+... .... ..+++.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ii~~----------------~~~~~~~g~~~ 94 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLREVIEE----------------ARQRRSAGRRT 94 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHHHHHH----------------HHHhhhcCCce
Confidence 57889999999999999999977 3333 2222221111112222221 1111 135788
Q ss_pred EEEEcCCCCcch--hhhhccCCCCCCcEEEE--Eecchhhh--c---ccCceEEecCCCHHHHHHHHHHHhcccCCCC-c
Q 037045 82 VLFLDGVSSEIN--FKEIGMHDDHGRGKVVF--ACRSREFC--W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY-P 151 (424)
Q Consensus 82 LlvlD~~~~~~~--~~~~~~~~~~~~~~iii--ttr~~~~~--~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~-~ 151 (424)
+|++|+++.... .+.+ .+....+..++| ||.+.... . .....+.+.+++.++..+++.+.+....... .
T Consensus 95 vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 95 ILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred EEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 999999997642 2222 221223444444 33332211 1 5567899999999999999988764321111 3
Q ss_pred cHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045 152 DIELVADSIVKECGGMPYMLKLIGKE 177 (424)
Q Consensus 152 ~~~~~~~~I~~~~~g~Plai~~~a~~ 177 (424)
..++....|++.|+|.+..+.-+...
T Consensus 174 i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 174 LDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567788999999999766544433
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=2.5e-08 Score=101.63 Aligned_cols=142 Identities=25% Similarity=0.198 Sum_probs=87.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.++.+|.. ..+|+.|++++|.++.+|.. ..+|++|++++|.+..+|.. ..+|..|++ .
T Consensus 302 ~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~L--s 370 (788)
T PRK15387 302 PGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLASLPTL---PSELYKLWA--Y 370 (788)
T ss_pred cccceeECCCCccccCCCC--cccccccccccCcccccccc----ccccceEecCCCccCCCCCC---Ccccceehh--h
Confidence 6788888888888876643 23466677777777766641 24678888888877666642 245556666 5
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc----------CCCCCCCCcChhhh
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH----------ADAGSGEMISLNII 412 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~----------~~~~~~~~~~~~~l 412 (424)
++.+..+|... .+|+.|++++|.++.+|.. .++|+.|++++|.+.+ +|. ..+..+ ..+..+
T Consensus 371 ~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt--~LP~sl 441 (788)
T PRK15387 371 NNRLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT--RLPESL 441 (788)
T ss_pred ccccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc--ccChHH
Confidence 66666666432 3566666666666666542 2456666666666543 222 011111 234567
Q ss_pred hccccCceeecC
Q 037045 413 SKLRLLEELIIE 424 (424)
Q Consensus 413 ~~l~~L~~L~l~ 424 (424)
+++++|+.|+|+
T Consensus 442 ~~L~~L~~LdLs 453 (788)
T PRK15387 442 IHLSSETTVNLE 453 (788)
T ss_pred hhccCCCeEECC
Confidence 888999998875
No 45
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=5.9e-08 Score=89.49 Aligned_cols=235 Identities=17% Similarity=0.164 Sum_probs=159.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
|.+.++|.|||||||++-.+.. .. ..+-+++.++++.+-.+...+.-.+...++...... +.....+.....+++.
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~-~~-~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~rr~ 90 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH-AA-SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGDRRA 90 (414)
T ss_pred heeeeeccCccceehhhhhhHh-Hh-hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhhhhH
Confidence 6789999999999999999999 41 344477889999998888888888888887765110 1123345556678999
Q ss_pred EEEEcCCCCcchhhhh---ccCCCCCCcEEEEEecchhhhcccCceEEecCCCHH-HHHHHHHHHhccc---CCCCccHH
Q 037045 82 VLFLDGVSSEINFKEI---GMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQR-EAKKLFWEVVGVH---LKKYPDIE 154 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~---~~~~~~~~~~iiittr~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~---~~~~~~~~ 154 (424)
++|+||.....+--.- .+......-.++.|+|..... ..+....+..++.. ++.++|...+... -.-.....
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~-~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~ 169 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV-AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA 169 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc-cccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence 9999998876431111 122334445677787776655 45556677777764 7888887666433 11122235
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHH---hhhcCcccccchhhhhHHHhhhhccCCcchHhHHhhhh
Q 037045 155 LVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADE---LRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWA 231 (424)
Q Consensus 155 ~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la 231 (424)
....+|+++..|.|++|..++...++-...+.-...-+. +......-........+.+..||.-|+.-.+-.|..++
T Consensus 170 a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa 249 (414)
T COG3903 170 AAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLA 249 (414)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchh
Confidence 567889999999999999999998886332222222222 22210000111156778899999999999999999999
Q ss_pred hccCCCCCCh
Q 037045 232 IFSTGLELSQ 241 (424)
Q Consensus 232 ~fp~~~~i~~ 241 (424)
.|...+..+.
T Consensus 250 ~~~g~f~~~l 259 (414)
T COG3903 250 VFVGGFDLGL 259 (414)
T ss_pred hhhhhhcccH
Confidence 9988776553
No 46
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.65 E-value=5.4e-07 Score=80.13 Aligned_cols=149 Identities=9% Similarity=0.080 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|+.|+|||+|++.+++... .....+.|+.+..... ... + +.+.+.. --
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---~~~----------------~----~~~~~~~-~d 99 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---FVP----------------E----VLEGMEQ-LS 99 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---hhH----------------H----HHHHhhh-CC
Confidence 4678999999999999999998873 3334567776643110 000 1 1111111 23
Q ss_pred EEEEcCCCCcc---hhhhhccC----CCCCC-cEEEEEecchhhh-----c------ccCceEEecCCCHHHHHHHHHHH
Q 037045 82 VLFLDGVSSEI---NFKEIGMH----DDHGR-GKVVFACRSREFC-----W------QADGVIHVQQLCQREAKKLFWEV 142 (424)
Q Consensus 82 LlvlD~~~~~~---~~~~~~~~----~~~~~-~~iiittr~~~~~-----~------~~~~~~~l~~l~~~~~~~l~~~~ 142 (424)
+|+|||++... .|++..+. ....+ .++|+||+..... + ....++++++++.++-.+++.+.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 78999997642 33322111 12233 4799998854332 1 55589999999999999998876
Q ss_pred hcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 143 VGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 143 ~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
+... .-...++....|++.+.|....+..+...+
T Consensus 180 a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 180 ARLR--GFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 6432 223446678889999888776665554433
No 47
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.64 E-value=6.3e-07 Score=78.64 Aligned_cols=159 Identities=11% Similarity=0.119 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
..+.|+|+.|+|||.|.+.+++.......-..++|++ .+++...+...+... ....+.+.++ .-=
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~-~~D 99 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR-SAD 99 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC-TSS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh-cCC
Confidence 3578999999999999999999874322223466754 455566665555431 1233444444 334
Q ss_pred EEEEcCCCCcch---hhhhccC----CCCCCcEEEEEecchhhh-c----------ccCceEEecCCCHHHHHHHHHHHh
Q 037045 82 VLFLDGVSSEIN---FKEIGMH----DDHGRGKVVFACRSREFC-W----------QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 82 LlvlD~~~~~~~---~~~~~~~----~~~~~~~iiittr~~~~~-~----------~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
+|+|||++.... +++..+. ....|.++|+|++..... . .....+++++.+.++..+++.+.+
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 788999987643 2222111 234577899999543211 1 777789999999999999999888
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~ 177 (424)
... .-...++++..|++.+.+....|..+...
T Consensus 180 ~~~--~~~l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 180 KER--GIELPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHT--T--S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHh--CCCCcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 654 22244667888888888777666555443
No 48
>PF14516 AAA_35: AAA-like domain
Probab=98.64 E-value=1.5e-05 Score=74.71 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-----CCHHHHHH----HHHHHhcccc--------cccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-----GNIRDIQE----IILERLKVNA--------KELN 64 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~----~i~~~l~~~~--------~~~~ 64 (424)
+.+.|.|+-.+|||||...+.+... ..-..++++++..- .+.+.+++ .+..+++... ...+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~--~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQ--QQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHH--HCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 3578999999999999999999885 22334668886652 34555554 4444444332 1112
Q ss_pred hhHHHHHHHHHh-c--cCcEEEEEcCCCCcchh----hhh-cc-C---------CCCCCcEEE-EEe-cchhhhc-----
Q 037045 65 NDLRADIISKEL-N--DRSYVLFLDGVSSEINF----KEI-GM-H---------DDHGRGKVV-FAC-RSREFCW----- 119 (424)
Q Consensus 65 ~~~~~~~l~~~l-~--~~~~LlvlD~~~~~~~~----~~~-~~-~---------~~~~~~~ii-itt-r~~~~~~----- 119 (424)
.......+.+.+ . +++.+|+||+++..... +++ ++ . +....-..+ +.+ +......
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 222233444432 2 47999999999865321 112 10 0 111111222 221 1111111
Q ss_pred -ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 037045 120 -QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ 181 (424)
Q Consensus 120 -~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~ 181 (424)
.....+++++|+.+|..+|+.++-... .+...++|...++|||..+..++..+...
T Consensus 190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 190 FNIGQPIELPDFTPEEVQELAQRYGLEF------SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccccceeCCCCCHHHHHHHHHhhhccC------CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445578899999999999988764321 13338889999999999999999999764
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.64 E-value=1.3e-07 Score=96.07 Aligned_cols=110 Identities=23% Similarity=0.374 Sum_probs=90.6
Q ss_pred ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeeeccccccc-ccCChhhhccCCCCEEEe
Q 037045 287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLL-LQLPAEIGRLQKLEILDV 364 (424)
Q Consensus 287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~~~~~~-~~lp~~~~~l~~L~~L~l 364 (424)
++.|++++|.+++..+..+..+++|+.|++++|.+ +.+|..++.+++|+.|++ ++|.+ +.+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdL--s~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL--SYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC--CCCCCCCCCchHHhcCCCCCEEEC
Confidence 77899999999865555588899999999999998 688888999999999999 55555 478999999999999999
Q ss_pred cCCcCc-ccchhhhcC-CCCCEeeeccccCCCCccc
Q 037045 365 SHTKVQ-CLPSEIGQL-IELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 365 ~~~~i~-~lp~~i~~l-~~L~~l~l~~n~~~~~~~~ 398 (424)
++|.++ .+|..++.+ .++..+++.+|...+..|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999977 888887654 4677889999876555443
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=1.6e-07 Score=80.38 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=81.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.+|||+|+||||||.-+++.. ...|. +++...-....++. .++. .+ +++.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~~i~k~~dl~-~il~--------------------~l-~~~~I 104 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGPAIEKAGDLA-AILT--------------------NL-KEGDI 104 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECCC--SCHHHH-HHHH--------------------T---TT-E
T ss_pred eEEEECCCccchhHHHHHHHhcc--CCCeE---eccchhhhhHHHHH-HHHH--------------------hc-CCCcE
Confidence 36789999999999999999998 44442 22221111111111 1111 12 24557
Q ss_pred EEEcCCCCcc---------hhhhhcc--C-CCCC-----------CcEEEEEecchhhhc----ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI---------NFKEIGM--H-DDHG-----------RGKVVFACRSREFCW----QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~---------~~~~~~~--~-~~~~-----------~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~ 135 (424)
|.+|+++... .++...+ . ..+. -+-|=-|||...+.. ......+++..+.+|-
T Consensus 105 LFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el 184 (233)
T PF05496_consen 105 LFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEEL 184 (233)
T ss_dssp EEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHH
T ss_pred EEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHH
Confidence 7789988752 1222211 0 1111 122335888766655 3334457999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
.+++.+.+..- .-...++.+.+|++.+.|-|.-..-+...+
T Consensus 185 ~~Iv~r~a~~l--~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 185 AKIVKRSARIL--NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HHHHHHCCHCT--T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99998877543 345557789999999999996555444443
No 51
>PRK08727 hypothetical protein; Validated
Probab=98.63 E-value=6.2e-07 Score=79.64 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+|||+|++.+++... .....+.|+.+.. ....+.. .+ +.+ .+.-+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~~----------------~~-~~l-~~~dl 96 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLRD----------------AL-EAL-EGRSL 96 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHHH----------------HH-HHH-hcCCE
Confidence 489999999999999999998874 3333566766432 1111111 11 111 12348
Q ss_pred EEEcCCCCcc---hhhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEI---NFKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~---~~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
||+||++... .++...+. ....+..+|+|++...... .....+++++++.++-.+++.+.+.
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 9999998643 22222111 2234567999987422211 3467899999999999999998765
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai 171 (424)
.. .-...++....|++.+.|....+
T Consensus 177 ~~--~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 177 RR--GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred Hc--CCCCCHHHHHHHHHhCCCCHHHH
Confidence 43 22334567788888888766554
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=3.7e-06 Score=84.36 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC-------------------CceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR-------------------FDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|+.|+||||+|+.+++...-... |.-+++++.......+
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVD----------------- 102 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVD----------------- 102 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHH-----------------
Confidence 4568999999999999999987731111 1112222222221111
Q ss_pred ChhHHHHHHHHH----hccCcEEEEEcCCCCcch--hhhh-ccC-CCCCCcEEEEEecchhhhc----ccCceEEecCCC
Q 037045 64 NNDLRADIISKE----LNDRSYVLFLDGVSSEIN--FKEI-GMH-DDHGRGKVVFACRSREFCW----QADGVIHVQQLC 131 (424)
Q Consensus 64 ~~~~~~~~l~~~----l~~~~~LlvlD~~~~~~~--~~~~-~~~-~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~ 131 (424)
+....+... ..++.-++|||+++.... ++.+ ... ....+.++|++|++..... +....+.+..++
T Consensus 103 ---dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 103 ---EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred ---HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 111111111 123456899999998753 4444 111 2334677777777655444 778899999999
Q ss_pred HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch-HHHHHHHHHH
Q 037045 132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP-YMLKLIGKEL 178 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~a~~l 178 (424)
.++..+.+.+....+. ....++....|++.++|.. .+++++-+.+
T Consensus 180 ~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 180 AGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999998876542 2334567788999999866 4555544333
No 53
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=5.1e-08 Score=91.31 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=104.1
Q ss_pred cceeEEEeeccCCCC-C-CCCcCc---ccccEEEccCCCCCCCCh----HHhccc-CCCcEEEccCCCCC-----cCChh
Q 037045 263 AHTKRLSLFGFPSST-L-PDMPNC---CEILTLILEGKRLEKLPT----SFFDYM-CHLQLLDLHETNIG-----CLPPS 327 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~-~~~~~~---~~L~~L~l~~~~l~~~~~----~~~~~~-~~L~~L~l~~~~~~-----~~p~~ 327 (424)
++++.|+++++.+.. . +.+..+ ++|+.|++++|.++.... ..+..+ ++|+.|++++|.+. .++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 799999999999874 2 222333 459999999999884221 224455 88999999999884 23345
Q ss_pred hhcccccceeeecccccccc-----cCChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccCCCCcc
Q 037045 328 ISRLINLNALFLRSSCSLLL-----QLPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 328 ~~~l~~L~~l~l~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
+..+.+|++|++ ..+.+. .++..+..+++|+.|++++|.+.. ++..+.++++|++|++++|.+..
T Consensus 161 ~~~~~~L~~L~l--~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--- 235 (319)
T cd00116 161 LRANRDLKELNL--ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--- 235 (319)
T ss_pred HHhCCCcCEEEC--cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch---
Confidence 667788999999 666665 244456667899999999998762 33446678899999999997532
Q ss_pred cCCCCCCCCcChhhhhc-----cccCceeecC
Q 037045 398 HADAGSGEMISLNIISK-----LRLLEELIIE 424 (424)
Q Consensus 398 ~~~~~~~~~~~~~~l~~-----l~~L~~L~l~ 424 (424)
..+..+.. .++|++|+++
T Consensus 236 ---------~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 236 ---------AGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred ---------HHHHHHHHHHhccCCCceEEEcc
Confidence 12223322 3788888874
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.60 E-value=1.1e-07 Score=84.47 Aligned_cols=89 Identities=13% Similarity=0.248 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhcccccccChh-------HHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVNAKELNND-------LRADII 72 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~l 72 (424)
..++|.|++|+|||||++++++.... .+|+.++|+.+... .++.++++.+...+-......+.. ......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 35899999999999999999998863 38999999986665 789999999833322222111111 111122
Q ss_pred HHH-hccCcEEEEEcCCCCc
Q 037045 73 SKE-LNDRSYVLFLDGVSSE 91 (424)
Q Consensus 73 ~~~-l~~~~~LlvlD~~~~~ 91 (424)
... -.++++++++|++...
T Consensus 96 ~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHCCCCEEEEEECHHHh
Confidence 221 2368999999998764
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.4e-09 Score=95.69 Aligned_cols=148 Identities=24% Similarity=0.219 Sum_probs=114.2
Q ss_pred cceeEEEeeccCCCCCCC-C--cCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCC-CCcCChhhhccccccee
Q 037045 263 AHTKRLSLFGFPSSTLPD-M--PNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETN-IGCLPPSISRLINLNAL 337 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~--~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~l 337 (424)
++|+.|+++.|.+..+-+ . ..++.|+.|.++.|.++ .....+...+|+|..|.+.+|. +........-+..|+.|
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 899999999999887432 2 67889999999999998 3334446678999999999994 32222234457889999
Q ss_pred eecccccccccCC--hhhhccCCCCEEEecCCcCcc--cchh-----hhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045 338 FLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQC--LPSE-----IGQLIELKYLRVSRVENVGNHTHADAGSGEMIS 408 (424)
Q Consensus 338 ~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~--lp~~-----i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 408 (424)
++ +++.+-..+ ...+.++.|..|+++.|++.+ +|+. ...+++|++|+++.|++. .|.+
T Consensus 252 dL--s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-----------~w~s 318 (505)
T KOG3207|consen 252 DL--SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-----------DWRS 318 (505)
T ss_pred cc--cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-----------cccc
Confidence 99 777776666 568889999999999999874 4554 357889999999999753 6778
Q ss_pred hhhhhccccCceeec
Q 037045 409 LNIISKLRLLEELII 423 (424)
Q Consensus 409 ~~~l~~l~~L~~L~l 423 (424)
+..+-.+.+|+.|.+
T Consensus 319 l~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 319 LNHLRTLENLKHLRI 333 (505)
T ss_pred cchhhccchhhhhhc
Confidence 888888888887764
No 56
>PRK09087 hypothetical protein; Validated
Probab=98.60 E-value=5.8e-07 Score=79.18 Aligned_cols=137 Identities=10% Similarity=0.112 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+|||+|++.+++... ..|++.. .+..++...+. + -+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~~--------------------~--~~ 90 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAAA--------------------E--GP 90 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhhh--------------------c--Ce
Confidence 589999999999999999887652 1243322 22222222111 1 27
Q ss_pred EEEcCCCCcc-hhhhh--ccC-CCCCCcEEEEEecch---------hhhc--ccCceEEecCCCHHHHHHHHHHHhcccC
Q 037045 83 LFLDGVSSEI-NFKEI--GMH-DDHGRGKVVFACRSR---------EFCW--QADGVIHVQQLCQREAKKLFWEVVGVHL 147 (424)
Q Consensus 83 lvlD~~~~~~-~~~~~--~~~-~~~~~~~iiittr~~---------~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 147 (424)
|++||++... +-+.+ -+. ....|..+|+|++.. +... .....+++++++.++-.+++++.+...
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~- 169 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR- 169 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-
Confidence 8889997542 11222 111 334567899988731 1111 666899999999999999999888653
Q ss_pred CCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045 148 KKYPDIELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 148 ~~~~~~~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
.-...++....|++.+.|....+..+..
T Consensus 170 -~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 170 -QLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred -CCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2234466788899988888777665443
No 57
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.59 E-value=4.9e-06 Score=84.25 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc---CCCCc--eEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE---SRRFD--IIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKE 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~ 75 (424)
++.|+|++|+|||+.++.|++.... ..... .+++|++....++..++..|++++.... ......+....+...
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 5679999999999999999987642 11222 3678888887888999999999885433 222223334444444
Q ss_pred hcc---CcEEEEEcCCCCcch-----hhhhccC-CCCCCcEEEE--Eecchhhh----c-----ccCceEEecCCCHHHH
Q 037045 76 LND---RSYVLFLDGVSSEIN-----FKEIGMH-DDHGRGKVVF--ACRSREFC----W-----QADGVIHVQQLCQREA 135 (424)
Q Consensus 76 l~~---~~~LlvlD~~~~~~~-----~~~~~~~-~~~~~~~iii--ttr~~~~~----~-----~~~~~~~l~~l~~~~~ 135 (424)
+.. ...+||||+++.... +-.+ +. ....++++++ ++...+.. + .....+.+++++.++.
T Consensus 863 L~k~~r~v~IIILDEID~L~kK~QDVLYnL-FR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 863 NKKDNRNVSILIIDEIDYLITKTQKVLFTL-FDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEI 941 (1164)
T ss_pred hhcccccceEEEeehHhhhCccHHHHHHHH-HHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHH
Confidence 321 246999999986531 2111 11 2233455443 33221111 1 2233477799999999
Q ss_pred HHHHHHHhcc
Q 037045 136 KKLFWEVVGV 145 (424)
Q Consensus 136 ~~l~~~~~~~ 145 (424)
.+++..++..
T Consensus 942 ~dILk~RAe~ 951 (1164)
T PTZ00112 942 EKIIKERLEN 951 (1164)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.2e-08 Score=92.23 Aligned_cols=125 Identities=26% Similarity=0.249 Sum_probs=84.7
Q ss_pred cceeEEEeeccCCCC--CC-CCcCcccccEEEccCCC-CC--CCChHHhcccCCCcEEEccCCCCCcCC--hhhhccccc
Q 037045 263 AHTKRLSLFGFPSST--LP-DMPNCCEILTLILEGKR-LE--KLPTSFFDYMCHLQLLDLHETNIGCLP--PSISRLINL 334 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~~L~~L~l~~~~~~~~p--~~~~~l~~L 334 (424)
++++.|.++.|.++. +. -...|++|..|++..|. +. ..+ ...+..|+.||+++|.+-+++ +..+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccch
Confidence 778888888888775 22 22678888888888774 22 122 233567888888888775544 567788888
Q ss_pred ceeeecccccccccC--Chh-----hhccCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccC
Q 037045 335 NALFLRSSCSLLLQL--PAE-----IGRLQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 335 ~~l~l~~~~~~~~~l--p~~-----~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~ 392 (424)
+-|++ +.+.+.++ |+. ...+++|+.|++..|+++..++ .+..+++|++|.+..|.+
T Consensus 274 ~~Lnl--s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 274 NQLNL--SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhhc--cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 88888 67776654 332 3456788888888888764443 366677777777777654
No 59
>PRK05642 DNA replication initiation factor; Validated
Probab=98.57 E-value=1.1e-06 Score=78.17 Aligned_cols=148 Identities=13% Similarity=0.150 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|+.|+|||.|++.+++... ..-..++|++... +... ...+.+.+.+-. +
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~d-~ 100 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR-----------------GPELLDNLEQYE-L 100 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh-----------------hHHHHHhhhhCC-E
Confidence 578999999999999999998773 2234577776432 2211 011222233333 6
Q ss_pred EEEcCCCCc---chhhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSE---INFKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~---~~~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
||+||++.. ..|++..+. ....+..+|+|++...... .....+++++++.++-.++++..+.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 788999743 233332121 2345677888887433221 3347788999999999999986554
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
.. .-...++....|++.+.|....+..+...|
T Consensus 181 ~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 181 RR--GLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred Hc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 32 122335677888888888776665544433
No 60
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=5e-08 Score=94.29 Aligned_cols=146 Identities=29% Similarity=0.329 Sum_probs=119.6
Q ss_pred cceeEEEeeccCCCCCCCCcCcc--cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCC--EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~ 340 (424)
+.++.|++.++.+..++...... +|+.|++++|.+..++.. +..++.|+.|+++.|.+..+|...+.+++|+.+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l- 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL- 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec-
Confidence 57899999999999987764443 899999999999988644 67889999999999999888887778899999999
Q ss_pred ccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCce
Q 037045 341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEE 420 (424)
Q Consensus 341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 420 (424)
+.+.+..+|.....+..|..+.+++|.+...|..+.+++++..+.+..|.+. ..+..++.+++|++
T Consensus 194 -s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l~~ 259 (394)
T COG4886 194 -SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-------------DLPESIGNLSNLET 259 (394)
T ss_pred -cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-------------eccchhccccccce
Confidence 8999999998777777799999999976666667888888988888887532 22567788888888
Q ss_pred eecC
Q 037045 421 LIIE 424 (424)
Q Consensus 421 L~l~ 424 (424)
|+++
T Consensus 260 L~~s 263 (394)
T COG4886 260 LDLS 263 (394)
T ss_pred eccc
Confidence 8764
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=6.2e-06 Score=81.47 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|++|+||||+|+.+++... ++ ++-++.+...+.. ....+........ ..+..++-
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i~~~~~~~-------------sl~~~~~k 100 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVAGEAATSG-------------SLFGARRK 100 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHHHHhhccC-------------cccCCCCe
Confidence 4688999999999999999999872 22 2333444333222 2222222211110 01113577
Q ss_pred EEEEcCCCCcch------hhhhccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 82 VLFLDGVSSEIN------FKEIGMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 82 LlvlD~~~~~~~------~~~~~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
+||||+++.... ++.+.-.....++.+|+++....... .....+++.+++.++....+.+.+.... .
T Consensus 101 vIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg--i 178 (482)
T PRK04195 101 LILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEG--I 178 (482)
T ss_pred EEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 999999987532 33331011234455666664322111 5567899999999999999988775542 1
Q ss_pred ccHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 037045 151 PDIELVADSIVKECGGMPYMLKLIGKELA 179 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai~~~a~~l~ 179 (424)
....+....|++.++|....+......+.
T Consensus 179 ~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 179 ECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 22356788999999998766554444433
No 62
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.54 E-value=5.4e-08 Score=91.17 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=108.1
Q ss_pred cceeEEEeeccCCCC--CC----CCcCc-ccccEEEccCCCCCCCC----hHHhcccCCCcEEEccCCCCCc-----CCh
Q 037045 263 AHTKRLSLFGFPSST--LP----DMPNC-CEILTLILEGKRLEKLP----TSFFDYMCHLQLLDLHETNIGC-----LPP 326 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~----~~~~~-~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~p~ 326 (424)
++++.|++++|.+.. .+ .+..+ ++|+.|++++|.++... ...+..+++|+.|++++|.+.. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 569999999999874 11 22455 89999999999998421 2235567789999999998842 334
Q ss_pred hhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCccc-chhhh-c----CCCCCEeeeccccCCCC
Q 037045 327 SISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQCL-PSEIG-Q----LIELKYLRVSRVENVGN 395 (424)
Q Consensus 327 ~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~-~----l~~L~~l~l~~n~~~~~ 395 (424)
.+..+++|+.|++ +++.+.. ++..+..+++|+.|++++|.++.. +..+. . .+.|++|++++|.+...
T Consensus 188 ~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 188 GLKANCNLEVLDL--NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHHhCCCCCEEec--cCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 4556679999999 6666642 344566789999999999987742 12222 2 37899999999975411
Q ss_pred cccCCCCCCCCcChhhhhccccCceeecC
Q 037045 396 HTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+.......+..+++|++|+++
T Consensus 266 --------~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 266 --------GAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred --------HHHHHHHHHhcCCCccEEECC
Confidence 122345567778899999875
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.54 E-value=1.6e-08 Score=92.05 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=98.3
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccC-CCCCcCCh-hhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE-TNIGCLPP-SISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~p~-~~~~l~~L~~l~ 338 (424)
++...+++..|.++.+|+ +..+++|++|++++|.++.+.+..|..++++..|-+.+ |++..+|. .|++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 566778888888888764 47788888888888888888887788887766665555 78888874 578888888888
Q ss_pred ecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045 339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE 391 (424)
Q Consensus 339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~ 391 (424)
+ .-+++..+++ .+..+++|..|.+..|.+.+++.+ +..+.+++++.+-.|.
T Consensus 147 l--Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 L--NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred c--ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 8 7777776654 577888888888888888888774 7777788888777766
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=4.8e-06 Score=79.14 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=61.5
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
++.-++|+|+++.... ++.+ .+-......++|++|.+.. +.. +....+++.+++.++..+.+.+.+....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-- 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-- 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 3456999999998753 3334 1112234556666665433 322 5568899999999999999988775541
Q ss_pred CccHHHHHHHHHHhcCCchHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
....++.+..|++.++|.|..+.
T Consensus 196 ~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 196 IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22335577889999999885443
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.9e-06 Score=76.67 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=101.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhcc--Cc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKELND--RS 80 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~--~~ 80 (424)
+.|+|..|+|||+.++.+++.......-..+++|++....++.+++..|+++++... .+....+..+.+.+.+.. +.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 689999999999999999999854222222899999999999999999999997444 566777777888887754 68
Q ss_pred EEEEEcCCCCcchh-----hhh-ccCCCCCCcEEE--EEecchhhhc---------ccCceEEecCCCHHHHHHHHHHHh
Q 037045 81 YVLFLDGVSSEINF-----KEI-GMHDDHGRGKVV--FACRSREFCW---------QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 81 ~LlvlD~~~~~~~~-----~~~-~~~~~~~~~~ii--ittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
+++|+|+++....- -.+ ..+... .++|+ ..+....+.. -....+.+.+-+.+|-.+.+..++
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 99999999875432 233 222222 34333 2333322211 344458899999999999999888
Q ss_pred ccc
Q 037045 144 GVH 146 (424)
Q Consensus 144 ~~~ 146 (424)
...
T Consensus 204 ~~~ 206 (366)
T COG1474 204 EEG 206 (366)
T ss_pred Hhh
Confidence 643
No 66
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=2.9e-06 Score=76.17 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=108.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCc----eEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFD----IIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKE 75 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~ 75 (424)
|+-+.|+|.+|.|||+++++++........-+ .|+.|......+...+...|+.+++.+. ...............
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998775422222 3788889999999999999999999888 445555555556666
Q ss_pred hccC-cEEEEEcCCCCcc---------hhhhhccC-CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045 76 LNDR-SYVLFLDGVSSEI---------NFKEIGMH-DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 76 l~~~-~~LlvlD~~~~~~---------~~~~~~~~-~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~ 137 (424)
++.- --+||||++++.. .++.+.+. ..-.=+-|.+-|+....+- ..+..+.+.....++-..
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~ 220 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFR 220 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHH
Confidence 7664 4599999998741 12222111 2222234445555432222 556677777766644333
Q ss_pred HHHHHhccc----CCCCccHHHHHHHHHHhcCCch
Q 037045 138 LFWEVVGVH----LKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 138 l~~~~~~~~----~~~~~~~~~~~~~I~~~~~g~P 168 (424)
-|-...... ....-...+.++.|...++|..
T Consensus 221 ~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 221 RLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 332333221 2233344678899999999976
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.45 E-value=8.9e-06 Score=69.86 Aligned_cols=143 Identities=14% Similarity=0.136 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC--------------------CCCceEEEEEecc-CCCHHHHHHHHHHHhcccc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES--------------------RRFDIIFWENINT-DGNIRDIQEIILERLKVNA 60 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 60 (424)
..+.++|+.|+|||++|+.+.+...-. .+.|. .++.... ....+. .+++...+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~-i~~i~~~~~~~- 91 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ-VRELVEFLSRT- 91 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-HHHHHHHHccC-
Confidence 357899999999999999999887422 11121 2222111 111111 11222221100
Q ss_pred cccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecch-hhhc---ccCceEEecCCCH
Q 037045 61 KELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSR-EFCW---QADGVIHVQQLCQ 132 (424)
Q Consensus 61 ~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~-~~~~---~~~~~~~l~~l~~ 132 (424)
-..+.+-++|+|+++.... .+.+ .+......+.+|++|++. .+.. .....+++.+++.
T Consensus 92 --------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~ 157 (188)
T TIGR00678 92 --------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSE 157 (188)
T ss_pred --------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCH
Confidence 0124566899999987642 3333 112223345566666543 2222 5667999999999
Q ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH
Q 037045 133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY 169 (424)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl 169 (424)
++..+.+.+. + ..++.+..|++.++|.|.
T Consensus 158 ~~~~~~l~~~-g-------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 158 EALLQWLIRQ-G-------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHHHc-C-------CCHHHHHHHHHHcCCCcc
Confidence 9999888776 1 114578899999999885
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=5.2e-07 Score=91.73 Aligned_cols=86 Identities=28% Similarity=0.502 Sum_probs=78.3
Q ss_pred CcEEEccCCCC-CcCChhhhcccccceeeeccccccc-ccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeee
Q 037045 311 LQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRV 387 (424)
Q Consensus 311 L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l 387 (424)
++.|++++|.+ +.+|..++.+++|+.|++ +.+.+ +.+|..++.+++|+.|++++|.++ .+|..++++++|++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~L--s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINL--SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEEC--CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 77899999998 788999999999999999 66665 589999999999999999999988 78988999999999999
Q ss_pred ccccCCCCccc
Q 037045 388 SRVENVGNHTH 398 (424)
Q Consensus 388 ~~n~~~~~~~~ 398 (424)
++|.+.|.+|.
T Consensus 498 s~N~l~g~iP~ 508 (623)
T PLN03150 498 NGNSLSGRVPA 508 (623)
T ss_pred cCCcccccCCh
Confidence 99999988876
No 69
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.44 E-value=3.1e-06 Score=75.08 Aligned_cols=145 Identities=10% Similarity=0.053 Sum_probs=87.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|+.|+|||+||+.+++... ..-..+.+++...... .+ .. ....-
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~~~~------~~---------------------~~-~~~~~ 92 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAASPLL------AF---------------------DF-DPEAE 92 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHHhHH------HH---------------------hh-cccCC
Confidence 3588999999999999999999763 2222355665433210 00 01 12334
Q ss_pred EEEEcCCCCcchhh--hh--ccC-CCCCCc-EEEEEecchhhhc----------ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045 82 VLFLDGVSSEINFK--EI--GMH-DDHGRG-KVVFACRSREFCW----------QADGVIHVQQLCQREAKKLFWEVVGV 145 (424)
Q Consensus 82 LlvlD~~~~~~~~~--~~--~~~-~~~~~~-~iiittr~~~~~~----------~~~~~~~l~~l~~~~~~~l~~~~~~~ 145 (424)
++|+||++...... .+ .+. ....+. .+|+|++...... .....+++.++++++-..++.+....
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 78899998653211 22 111 112333 4666665422111 22478899999998877777765432
Q ss_pred cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
. .....++....+++.+.|++..+..+...+
T Consensus 173 ~--~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 R--GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred c--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2 123335677888889999998877666554
No 70
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.43 E-value=1.2e-05 Score=77.77 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|+.|+|||+|++.+++.......--.++|++. .++...+...+... . ...+.+.+++ .-+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~----~~~~~~~~~~-~dl 202 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN----K----MEEFKEKYRS-VDL 202 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----C----HHHHHHHHHh-CCE
Confidence 4789999999999999999998742211234666643 33444444444321 1 2223333333 338
Q ss_pred EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchh--hh---c------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSRE--FC---W------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~--~~---~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
|+|||++.... .+.+ .+. ....+..+|+|+.... .. . .....+++++.+.++-.+++.+.+.
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 88999986421 1112 111 1234566888876421 11 1 3345789999999999999998886
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhh
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY 216 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~ 216 (424)
.. .....++....|++.+.|....+.-+...+. ..-+.+..++.+..... .....-+.+.|..++...|
T Consensus 283 ~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~-~~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 283 EE--GLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLR-AKKKEITIENIQEVVAKYY 358 (405)
T ss_pred Hc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCHHHHHHHHHHHc
Confidence 54 2233367788899999998876554332221 12344556666554422 1111223355555555444
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=8.2e-06 Score=83.51 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=91.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC-------------------CceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR-------------------FDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|+.|+||||+|+.+++...-... |.-+++++......++.+ +.+...+.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI-ReLie~v~------ 112 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT-RELLDNVQ------ 112 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH-HHHHHHHH------
Confidence 3578999999999999999988742111 111122221111112211 22222111
Q ss_pred ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHH
Q 037045 64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREA 135 (424)
Q Consensus 64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~ 135 (424)
..-..++.-++|||+++... .++.+ ... ....++++|++|.+ ..+.. .....+++.+++.++.
T Consensus 113 ---------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI 183 (944)
T PRK14949 113 ---------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEI 183 (944)
T ss_pred ---------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHH
Confidence 01113567799999999873 33443 111 22234555555444 44433 6678999999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLI 174 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~ 174 (424)
.+++.+.+... .....++.+..|++.++|.|..+..+
T Consensus 184 ~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 184 GTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99998877553 22333567788999999988644433
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.42 E-value=6.3e-06 Score=77.85 Aligned_cols=171 Identities=13% Similarity=0.024 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCC-H-HHHHH--HHHHHhccc-ccccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGN-I-RDIQE--IILERLKVN-AKELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~-~-~~~~~--~i~~~l~~~-~~~~~~~~~~~~l~~~ 75 (424)
+.+.++|+.|+||||+|+.+++.... ..+ ...+.+++..... . ..+.. .....++.. .......+....+.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKE 115 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHH
Confidence 35789999999999999999988742 222 2244555432110 0 00000 000000000 0000011112211111
Q ss_pred h------ccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHH
Q 037045 76 L------NDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWE 141 (424)
Q Consensus 76 l------~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~ 141 (424)
. .+.+-+||+|+++.... .+.+ .+......+++|+|+.... ... .....+++.+++.++..+++.+
T Consensus 116 ~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~ 195 (337)
T PRK12402 116 YASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLES 195 (337)
T ss_pred HHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHH
Confidence 1 13345899999987632 2222 1112234567777775432 222 5567889999999999999988
Q ss_pred HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
.+.... ....++.+..+++.++|.+..+....
T Consensus 196 ~~~~~~--~~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 196 IAEAEG--VDYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred HHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 775442 12346678889999999876654433
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.41 E-value=3.7e-05 Score=72.04 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe--ccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI--NTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 79 (424)
+.+.|+|+.|+||||+|+.+++...... +. ..++.+ +.......+...+ ..+....+ .....
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~~~~~i-~~~~~~~~-------------~~~~~ 102 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDVIRNKI-KEFARTAP-------------VGGAP 102 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHHHHHHH-HHHHhcCC-------------CCCCC
Confidence 3578999999999999999999874222 21 122222 2222222111111 11110000 00123
Q ss_pred cEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCCc
Q 037045 80 SYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYP 151 (424)
Q Consensus 80 ~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 151 (424)
+-++++|+++.... .+.+ .+......+.+|+++.... ... .....+++.+++.++....+.+.+.... ..
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~--~~ 180 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG--IE 180 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC--CC
Confidence 56899999886532 2222 1122334567777664322 211 4566789999999999999988876542 22
Q ss_pred cHHHHHHHHHHhcCCchHHHH
Q 037045 152 DIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 152 ~~~~~~~~I~~~~~g~Plai~ 172 (424)
..++.+..+++.++|.+..+.
T Consensus 181 i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 181 ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 335678889999999886643
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=6.3e-06 Score=80.09 Aligned_cols=175 Identities=13% Similarity=0.163 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
-+.|+|++|+|||+|++.+++.... .+.+ .++|++. +++..++...+... . ...+.+.++...-
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHHhcCC
Confidence 4789999999999999999998742 2233 4677653 45555655554322 1 1223333433455
Q ss_pred EEEEcCCCCcch---h-hhh--ccC-CCCCCcEEEEEec-chhhh----c------ccCceEEecCCCHHHHHHHHHHHh
Q 037045 82 VLFLDGVSSEIN---F-KEI--GMH-DDHGRGKVVFACR-SREFC----W------QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 82 LlvlD~~~~~~~---~-~~~--~~~-~~~~~~~iiittr-~~~~~----~------~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
+|++||++.... . +.+ .+. ....+..+|+||. ..... . .....+++++.+.++-.+++++.+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 899999985421 1 122 111 1233457888875 22111 1 445688899999999999999887
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHh
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADEL 194 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l 194 (424)
... .....++.+..|++.+.|....+..+-..+. ...+.+..++.+..+
T Consensus 277 ~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 277 EIE--HGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred Hhc--CCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 643 2223467888999999887665554433221 114455555666554
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=2.9e-05 Score=77.23 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|+.|+||||+|+.+++...-.. .+--++.++.......+++. ++......
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIR-eli~~~~y----- 112 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTR-ELLDNVPY----- 112 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHH-HHHHHHhh-----
Confidence 467899999999999999988763111 11112222322222222211 11111110
Q ss_pred ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHH
Q 037045 64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREA 135 (424)
Q Consensus 64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~ 135 (424)
.-..++.-++|||+++... ..+.+ .+-....+.++|++|.+..... .....+++.+++.++.
T Consensus 113 ----------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI 182 (702)
T PRK14960 113 ----------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI 182 (702)
T ss_pred ----------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHH
Confidence 0112456699999999764 23333 1112224557777665533322 7788999999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.+.+.+.+... .....++....|++.++|.+..+.
T Consensus 183 ~k~L~~Il~kE--gI~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 183 TKHLGAILEKE--QIAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 99998888654 223335677889999999874443
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.9e-05 Score=77.50 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=61.8
Q ss_pred cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|+|+++... .++.+ .+......+.+|+ ||+...+.. .....+++.+++.++..+.+.+.+....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-- 204 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-- 204 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence 466799999998763 34444 1122234455554 544444443 6667899999999999999998886542
Q ss_pred CccHHHHHHHHHHhcCCchHHH
Q 037045 150 YPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai 171 (424)
....++....|++.++|.+..+
T Consensus 205 i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 205 LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 2223556788999999987444
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.39 E-value=1.1e-06 Score=81.86 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHHHHhcccc-cccChhHH-----HHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIILERLKVNA-KELNNDLR-----ADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~-----~~~l~~ 74 (424)
-..|+|++|+||||||+++++.... .+|+..+||.+.... ++.++++.+...+-... +....... .-...+
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999864 389999999987765 77778877763222111 11111111 001111
Q ss_pred H--hccCcEEEEEcCCCCc
Q 037045 75 E--LNDRSYVLFLDGVSSE 91 (424)
Q Consensus 75 ~--l~~~~~LlvlD~~~~~ 91 (424)
. -.+++++|++|++...
T Consensus 250 ~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHcCCCEEEEEEChHHH
Confidence 1 2568999999998754
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.6e-05 Score=78.21 Aligned_cols=159 Identities=12% Similarity=0.055 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH-
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE- 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~- 75 (424)
.+.++|++|+||||+|+.+++...-...+...+|.+.+. ..+........ .....++ +..+.+.
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h~dv~el~~~~~~~vd~-iR~l~~~~ 108 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAHPDVLEIDAASNNSVED-VRDLREKV 108 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCCCceEEecccccCCHHH-HHHHHHHH
Confidence 458999999999999999998874212222222222110 00000000000 0001111 1111111
Q ss_pred ----hccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 76 ----LNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 76 ----l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
+.+++-++|||+++... .++.+ .+......+.+|++|. ...+.. .....+++.+++.++..+.+.+.+
T Consensus 109 ~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred hhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 12456699999998663 23333 1112223445554444 333333 667899999999999999999887
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.... ....++.+..|++.++|.+..+.
T Consensus 189 ~~eg--i~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 189 EAEG--REAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred HHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 6542 22235678889999999996554
No 79
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.39 E-value=1.5e-05 Score=78.16 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||+|++.+++.......--.++|++.. ++...+...+... . ...+.+.++ +.-+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~----~~~~~~~~~-~~dl 214 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN----T----MEEFKEKYR-SVDV 214 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC----c----HHHHHHHHh-cCCE
Confidence 47899999999999999999988422112235665533 3344444444321 1 122333333 2348
Q ss_pred EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchh-----hhc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSRE-----FCW------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~-----~~~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
|+|||++.... .+.+ .+. ....+..+|+|+.... +.. .....+++++.+.++..+++++.+.
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 89999976421 1222 011 1223456888776431 111 4446899999999999999999886
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhh
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY 216 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~ 216 (424)
.. .....++....|++.+.|....+..+...+. ..-+.+..+..++.+.. .....-..+.|...+.-.|
T Consensus 295 ~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~-~~~~~~~~~~i~~~v~~~~ 370 (450)
T PRK00149 295 EE--GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLA-AQKKKITIENIQKVVAEYY 370 (450)
T ss_pred Hc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHHc
Confidence 43 2234466788999999998876544433221 12455556666665422 1111122345555555555
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=98.38 E-value=8.4e-06 Score=76.19 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
-+.++|++|+||||+|..+++... ...|. .++-++.+...+.+. .+.+...+...... ...++.-
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~~------------~~~~~~k 101 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGIDV-VRNKIKMFAQKKVT------------LPPGRHK 101 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHHH-HHHHHHHHHhcccc------------CCCCCeE
Confidence 367899999999999999999863 22232 222222222222222 22222211100000 0013456
Q ss_pred EEEEcCCCCcchhh--hh-c-cCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045 82 VLFLDGVSSEINFK--EI-G-MHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI 153 (424)
Q Consensus 82 LlvlD~~~~~~~~~--~~-~-~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 153 (424)
++|+|+++....-. .+ . +-.....+++++++.... ... +....+++.+++.++..+.+.+.+.... ....
T Consensus 102 viiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~eg--i~i~ 179 (319)
T PLN03025 102 IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEK--VPYV 179 (319)
T ss_pred EEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcC--CCCC
Confidence 99999999864322 22 0 112234566776664432 222 5567899999999999999988876542 1223
Q ss_pred HHHHHHHHHhcCCchHHHH
Q 037045 154 ELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 154 ~~~~~~I~~~~~g~Plai~ 172 (424)
++....|++.++|....+.
T Consensus 180 ~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 180 PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 5577889999999874443
No 81
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.38 E-value=3.3e-08 Score=89.99 Aligned_cols=123 Identities=23% Similarity=0.385 Sum_probs=103.1
Q ss_pred EEEeeccCCCCCCCCcCcc-cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045 267 RLSLFGFPSSTLPDMPNCC-EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS 344 (424)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~ 344 (424)
.++.++-.+.++|. .++ ..+.+.+..|.++.+|+..|..+++||+||++.|.++.+ |..|.++++|.+|-+. +++
T Consensus 50 ~VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly-g~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY-GNN 126 (498)
T ss_pred eEEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh-cCC
Confidence 34455555555553 333 578899999999999999999999999999999999776 6789999999999884 669
Q ss_pred ccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccC
Q 037045 345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVEN 392 (424)
Q Consensus 345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~ 392 (424)
.+.++|. .++.+..|+.|.+.-|++..++.. +..+++|..|.+-+|.+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 9999997 588999999999999998877666 99999999999999864
No 82
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=2.5e-05 Score=77.47 Aligned_cols=197 Identities=10% Similarity=0.078 Sum_probs=113.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|..|+|||.|++.+++.......--.++|++ .+++..++...+... ....+++.+++- =+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~~-DL 380 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYREM-DI 380 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhcC-CE
Confidence 478999999999999999999874211123456654 344444444443211 122233334332 47
Q ss_pred EEEcCCCCcch---hhhhccC----CCCCCcEEEEEecchh-----hhc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEIN---FKEIGMH----DDHGRGKVVFACRSRE-----FCW------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~~---~~~~~~~----~~~~~~~iiittr~~~-----~~~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
|||||++.... +++..|. ....+..|||||+... +.. .....++++..+.+.-.+++++.+.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 88899986522 1111111 2334567888887521 111 6677889999999999999998876
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhh
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY 216 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~ 216 (424)
.. .....++++..|++.+.+....|..+...|. ...+.+..+.+++.+........-..+.|...+...|
T Consensus 461 ~r--~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f 537 (617)
T PRK14086 461 QE--QLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYF 537 (617)
T ss_pred hc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHh
Confidence 54 2233367888899988887665554443321 1134444555555443211111112245555555555
No 83
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.35 E-value=5.1e-07 Score=94.11 Aligned_cols=130 Identities=27% Similarity=0.355 Sum_probs=103.2
Q ss_pred CCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC--CCcCChh-hhcccccceeeecccccccccCChhhhc
Q 037045 279 PDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN--IGCLPPS-ISRLINLNALFLRSSCSLLLQLPAEIGR 355 (424)
Q Consensus 279 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~--~~~~p~~-~~~l~~L~~l~l~~~~~~~~~lp~~~~~ 355 (424)
|...+....+...+.+|.+...+.. ...+.|+.|-+.+|. +..++.. |..++.|+.||++ .+...+.+|+.++.
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs-~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS-GNSSLSKLPSSIGE 593 (889)
T ss_pred ccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC-CCCccCcCChHHhh
Confidence 3344555678888888888776653 345578888888885 5566544 7789999999995 67778899999999
Q ss_pred cCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 356 LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 356 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
+-+|+.|+++++.++.+|.+++++++|.+|++..+...+.+ ...+..|.+||+|.+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~------------~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI------------PGILLELQSLRVLRL 649 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccc------------cchhhhcccccEEEe
Confidence 99999999999999999999999999999999998644332 225556888888875
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=4.8e-05 Score=73.87 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|+.|+|||+|++.+++... ...-.+++++ .+.+...+...+... ....+++.++ ..-+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~-~~dv 205 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR-NVDA 205 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc-cCCE
Confidence 478999999999999999999874 2223456655 334444554444321 1122333333 3348
Q ss_pred EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecch-h----hhc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSR-E----FCW------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~-~----~~~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
|++||++.... .+++ .+. ....+..||+||... . +.. .....+.+++++.++..+++++.+.
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 88899876532 1122 111 122356788888542 1 111 3457889999999999999988876
Q ss_pred ccCCCCccHHHHHHHHHHhcCCch
Q 037045 145 VHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.. .....++....|++.+.+.-
T Consensus 286 ~~--~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 286 AL--SIRIEETALDFLIEALSSNV 307 (445)
T ss_pred Hc--CCCCCHHHHHHHHHhcCCCH
Confidence 53 12333566777888777655
No 85
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=5e-06 Score=67.95 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=58.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|++|+|||++++.+++... ..-..+++++.............+... ............+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 86 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-----------LVRLLFELAEKAKPG 86 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----------hHhHHHHhhccCCCe
Confidence 4688999999999999999999884 333457777765543322222111100 001111122234678
Q ss_pred EEEEcCCCCc--chhhhh--ccC--CC----CCCcEEEEEecchh
Q 037045 82 VLFLDGVSSE--INFKEI--GMH--DD----HGRGKVVFACRSRE 116 (424)
Q Consensus 82 LlvlD~~~~~--~~~~~~--~~~--~~----~~~~~iiittr~~~ 116 (424)
++|+|+++.. .....+ .+. .. ..+..+|+||....
T Consensus 87 ~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 87 VLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 9999999864 111111 111 11 35778888887654
No 86
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=5.7e-07 Score=61.59 Aligned_cols=57 Identities=33% Similarity=0.570 Sum_probs=36.7
Q ss_pred ccceeeecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045 333 NLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE 391 (424)
Q Consensus 333 ~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~ 391 (424)
+|+++++ ..+.+..+|. .+..+++|+.|++++|.++.+|++ +..+++|+++++++|.
T Consensus 2 ~L~~L~l--~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDL--SNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEE--TSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEEC--CCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666 5556666654 456667777777777766666554 6677777777777664
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.8e-05 Score=78.54 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=62.2
Q ss_pred cCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
++.-++|||+++... ..+.+ ... .-..++++|++|. ...+.. +....+.+..++.++..+.+.+.+..+.
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-- 200 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-- 200 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--
Confidence 456799999999874 33333 111 2224455555554 444443 7788999999999999999988776442
Q ss_pred CccHHHHHHHHHHhcCCchHHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~ 173 (424)
....++....|++.++|.+.....
T Consensus 201 i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 201 IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 122245668899999999864433
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=77.13 Aligned_cols=160 Identities=13% Similarity=0.024 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChh---HHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNND---LRADIIS 73 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~---~~~~~l~ 73 (424)
.+.++|+.|+||||+|+.+++...- ..... ...++...+ ...+........ .....+ +..+.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~s----C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~ 114 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTS----CLEITKGISSDVLEIDAASNRGIENIRELRDNVK 114 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcH----HHHHHccCCccceeechhhcccHHHHHHHHHHHH
Confidence 3689999999999999999998742 11110 011111111 112221111110 001111 1111111
Q ss_pred H-HhccCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 74 K-ELNDRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 74 ~-~l~~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
. -..++.-++|||+++... .++.+ ... .......+|+ ||....+.. .....+.+..++.++..+.+.+.+.
T Consensus 115 ~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 115 FAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred hhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHH
Confidence 1 113456799999999764 34444 111 1123444444 444444433 7778899999999999999988876
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai 171 (424)
... ....++....|++.++|.+...
T Consensus 195 ~Eg--i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 195 IEN--VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HcC--CCCCHHHHHHHHHHcCChHHHH
Confidence 542 2334567889999999998443
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=1.1e-05 Score=82.65 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=84.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--ccCc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--NDRS 80 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~~~ 80 (424)
-+.++|++|+||||+|+.+++.. ...|. .++... ....++ ++ ......+.+ .+++
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~--~~~f~---~lna~~-~~i~di-r~----------------~i~~a~~~l~~~~~~ 110 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHT--RAHFS---SLNAVL-AGVKDL-RA----------------EVDRAKERLERHGKR 110 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--cCcce---eehhhh-hhhHHH-HH----------------HHHHHHHHhhhcCCc
Confidence 46899999999999999999876 34442 111110 011111 11 111111111 2457
Q ss_pred EEEEEcCCCCcch--hhhhccCCCCCCcEEEEE--ecchhh--hc---ccCceEEecCCCHHHHHHHHHHHhccc-----
Q 037045 81 YVLFLDGVSSEIN--FKEIGMHDDHGRGKVVFA--CRSREF--CW---QADGVIHVQQLCQREAKKLFWEVVGVH----- 146 (424)
Q Consensus 81 ~LlvlD~~~~~~~--~~~~~~~~~~~~~~iiit--tr~~~~--~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~----- 146 (424)
.++|||+++.... .+.+ ++....+..++|+ |.+... .. +....+.+++++.++...++.+.+...
T Consensus 111 ~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g 189 (725)
T PRK13341 111 TILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYG 189 (725)
T ss_pred eEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 7999999987532 3333 2222334545543 333221 11 446689999999999999998877521
Q ss_pred CCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 147 LKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 147 ~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.......++....|++.+.|....+.
T Consensus 190 ~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 190 DRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred CcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 11223346677889999999764443
No 90
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.30 E-value=4.6e-05 Score=66.22 Aligned_cols=171 Identities=14% Similarity=0.126 Sum_probs=105.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChh----HHHHHHHHHh-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNND----LRADIISKEL- 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~l~~~l- 76 (424)
+++.++|.-|+|||.+++.+..... .-+...-+.-.+..+...+...+...+..+. ..+.. +....+.+..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHHH
Confidence 4789999999999999995555552 2222332233445677788888888888744 22222 2222233222
Q ss_pred ccCc-EEEEEcCCCCcc--hhhhh-ccC----CCCCCcEEEEEecchh--------hhc---ccCceEEecCCCHHHHHH
Q 037045 77 NDRS-YVLFLDGVSSEI--NFKEI-GMH----DDHGRGKVVFACRSRE--------FCW---QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 77 ~~~~-~LlvlD~~~~~~--~~~~~-~~~----~~~~~~~iiittr~~~--------~~~---~~~~~~~l~~l~~~~~~~ 137 (424)
++++ ..+++|+++... .++.+ .+. .....-+|+..-..+- ... .....|++.+++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 4566 999999998753 34443 111 1111123444332211 111 333338999999999999
Q ss_pred HHHHHhcccCCCCccH-HHHHHHHHHhcCCchHHHHHHHH
Q 037045 138 LFWEVVGVHLKKYPDI-ELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 138 l~~~~~~~~~~~~~~~-~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
+++.+......+.+.+ ++....|.....|.|.+|+.++.
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999887663333333 44668899999999999998874
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=3.7e-07 Score=62.49 Aligned_cols=54 Identities=31% Similarity=0.495 Sum_probs=31.6
Q ss_pred cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL 339 (424)
Q Consensus 286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l 339 (424)
+|+.|++++|+++.+++..+..+++|++|++++|.+..+| ..|..+++|+++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence 4556666666666655555555666666666666654443 34566666666666
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.3e-05 Score=76.33 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|+.|+||||+|+.+++...-.. .|.-+++++.......+++ +++...
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~-------- 110 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDN-------- 110 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHH--------
Confidence 467899999999999999998663111 1222333333222222221 122211
Q ss_pred ChhHHHHHHHH-HhccCcEEEEEcCCCCcch--hhhh-ccC-CCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHH
Q 037045 64 NNDLRADIISK-ELNDRSYVLFLDGVSSEIN--FKEI-GMH-DDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQRE 134 (424)
Q Consensus 64 ~~~~~~~~l~~-~l~~~~~LlvlD~~~~~~~--~~~~-~~~-~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~ 134 (424)
+.. -..+++-++|+|+++.... .+.+ ... .....+.+| +||....+.. .....+++.+++.++
T Consensus 111 --------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~e 182 (546)
T PRK14957 111 --------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQAD 182 (546)
T ss_pred --------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHH
Confidence 111 1235667999999987643 3333 111 222344555 4554443332 668899999999999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHH
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIG 175 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a 175 (424)
..+.+.+.+.... ....+.....|++.++|.+. ++..+-
T Consensus 183 I~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 183 IKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9988888765532 23335567889999999764 444443
No 93
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=8.4e-06 Score=77.67 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~ 81 (424)
-+.|+|++|+|||++|+.+++.. ...|- .+.. ..+.... ++. .......+.+.. ...++
T Consensus 158 gvLL~GppGtGKT~lakaia~~l--~~~~~-----~v~~----~~l~~~~---~g~------~~~~i~~~f~~a~~~~p~ 217 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHET--NATFI-----RVVG----SELVRKY---IGE------GARLVREIFELAKEKAPS 217 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC--CCCEE-----ecch----HHHHHHh---hhH------HHHHHHHHHHHHHhcCCc
Confidence 37899999999999999999987 33332 2111 1111110 010 001111111111 23578
Q ss_pred EEEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
+|+||+++... .+..+ .+. ....+..||.||....... ..+..+++...+.++
T Consensus 218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 99999987541 11111 011 1234567787877543322 235678999999999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
..++|..+......... .....+++.+.|+.
T Consensus 298 r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 298 RLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 99999888754421111 12456777787764
No 94
>PRK06620 hypothetical protein; Validated
Probab=98.29 E-value=8.9e-06 Score=71.05 Aligned_cols=135 Identities=9% Similarity=0.018 Sum_probs=82.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|++|+|||+|++.+++... . .++.... .. . +.+ ...-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~~~~------~~----------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIKDIF------FN----------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcchhh------hc----------------h-------hHH-hcCC
Confidence 3589999999999999999887652 1 1211000 00 0 011 1234
Q ss_pred EEEEcCCCCcchhhhh-ccC-CCCCCcEEEEEecchhhh---c------ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 82 VLFLDGVSSEINFKEI-GMH-DDHGRGKVVFACRSREFC---W------QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~-~~~-~~~~~~~iiittr~~~~~---~------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
++++||++...+..-+ .+. ....|..+|+|++..... + ....++++++++.++-.+++++.+... .-
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 7888999865331111 111 235567888888743221 1 556689999999999888888776532 12
Q ss_pred ccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 151 PDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
...+++...|++.+.|....+.-+-
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 3346677888888887765544333
No 95
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.28 E-value=1.8e-05 Score=72.33 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=90.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-ccc-------ChhHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KEL-------NNDLRADIIS 73 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~-------~~~~~~~~l~ 73 (424)
+.|.|+|.+|+|||.+++++.+.. ..+ -+|+++-...+...+.++|+.+.+..+ +.. ...+....+.
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~--n~~---~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~ 105 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQLLRKL--NLE---NVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV 105 (438)
T ss_pred eeEEEeccCCCchhHHHHHHHhhc--CCc---ceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence 356899999999999999999987 222 489999999999999999999996322 221 2222222333
Q ss_pred H--Hh--ccCcEEEEEcCCCCcchhhhhccC--------CCCCCcEEEEEecc-hhhhc-----ccCceEEecCCCHHHH
Q 037045 74 K--EL--NDRSYVLFLDGVSSEINFKEIGMH--------DDHGRGKVVFACRS-REFCW-----QADGVIHVQQLCQREA 135 (424)
Q Consensus 74 ~--~l--~~~~~LlvlD~~~~~~~~~~~~~~--------~~~~~~~iiittr~-~~~~~-----~~~~~~~l~~l~~~~~ 135 (424)
+ .. +++.++||+||++...|++...++ -..+...|+...-. +.... ....++.....+.+|.
T Consensus 106 q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~ 185 (438)
T KOG2543|consen 106 QWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEET 185 (438)
T ss_pred hhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHH
Confidence 2 11 135799999999988776665333 22333433332221 11111 4556677888999999
Q ss_pred HHHHHHHh
Q 037045 136 KKLFWEVV 143 (424)
Q Consensus 136 ~~l~~~~~ 143 (424)
.+++.+.-
T Consensus 186 ~~Il~~~~ 193 (438)
T KOG2543|consen 186 QVILSRDN 193 (438)
T ss_pred HHHHhcCC
Confidence 99886643
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=4.3e-05 Score=74.42 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccC-------------------CCCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGES-------------------RRFDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
-+.++|+.|+||||+|+.+++...-. ..+.-++.++.......+++. .+.......
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~---- 111 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCYL---- 111 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHhc----
Confidence 46789999999999999998754100 111123444444333333322 222211100
Q ss_pred ChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHH
Q 037045 64 NNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREA 135 (424)
Q Consensus 64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~ 135 (424)
-+.++.-++|+|+++.... .+.+ .+-.....+++|++|. ...+.. .....+++..++.++.
T Consensus 112 -----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el 180 (491)
T PRK14964 112 -----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKL 180 (491)
T ss_pred -----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHH
Confidence 0124566899999987643 3333 1112224456665554 334333 7788899999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.+.+.+.+.... ....++.+..|++.++|.+..+.
T Consensus 181 ~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 181 VEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 999998886652 23345667889999999886443
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=5.5e-05 Score=73.91 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC-------------------CceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR-------------------FDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|++|+||||+|+.+++...-... +..+..++.......+++. ++......
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~----- 111 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGY----- 111 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhh-----
Confidence 4678999999999999999987632110 1112233332222222221 22221110
Q ss_pred ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHH
Q 037045 64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREA 135 (424)
Q Consensus 64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~ 135 (424)
.-..+++-++|+|+++... ..+.+ .+........+|++|.+ ..+.+ .....+++.+++.++.
T Consensus 112 ----------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el 181 (472)
T PRK14962 112 ----------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELI 181 (472)
T ss_pred ----------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHH
Confidence 0012456799999998753 23333 11122233444444443 33333 6677899999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGKEL 178 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~~l 178 (424)
...+.+.+.... ....++....|++.++|. +.++..+....
T Consensus 182 ~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 182 IKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999988875431 223356678899877655 56666665543
No 98
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.23 E-value=3.9e-06 Score=78.56 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhcccccccChhH---H----HHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVNAKELNNDL---R----ADIIS 73 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~----~~~l~ 73 (424)
.++|+|++|+|||||++.+++... ..+|+..+|+.+... .++.++++.+...+-......+... . .....
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 589999999999999999999885 347998889988755 7899999998544332221111111 1 11111
Q ss_pred HH-hccCcEEEEEcCCCCc
Q 037045 74 KE-LNDRSYVLFLDGVSSE 91 (424)
Q Consensus 74 ~~-l~~~~~LlvlD~~~~~ 91 (424)
.. -.+++++|++|++...
T Consensus 249 ~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHcCCCeEEEEEChhHH
Confidence 11 2468999999999864
No 99
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=5.7e-05 Score=70.43 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=91.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc----cCCCCceEEEEE-eccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG----ESRRFDIIFWEN-INTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~----~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
...++|+.|+||||+|+.+++... ...++|...|.. -+.....+++ +++...+... -..
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~~~~~---------------p~~ 91 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEEVNKK---------------PYE 91 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHHHhcC---------------ccc
Confidence 467899999999999999998752 234566555544 2223333332 2232322211 012
Q ss_pred cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|+|+++... .++.+ .+.....++.+|++|.+..... +....+++.++++++..+.+.+....
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~---- 167 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND---- 167 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC----
Confidence 456678888877653 34444 1223345677777776544332 67789999999999998888765421
Q ss_pred CccHHHHHHHHHHhcCCchHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
..++.+..++..++|.|..+.
T Consensus 168 --~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 --IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 113446778999999886543
No 100
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.22 E-value=5.1e-05 Score=71.56 Aligned_cols=194 Identities=11% Similarity=0.093 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCc--eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFD--IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 79 (424)
..+.|||+.|.|||.|++.+++... .... .+++ .+.+++..++...+.. .....+++.. .
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y------~~se~f~~~~v~a~~~--------~~~~~Fk~~y--~ 175 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVY------LTSEDFTNDFVKALRD--------NEMEKFKEKY--S 175 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEe------ccHHHHHHHHHHHHHh--------hhHHHHHHhh--c
Confidence 3588999999999999999999984 3332 4555 3455556555555442 2244555555 3
Q ss_pred cEEEEEcCCCCcch---hhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHH
Q 037045 80 SYVLFLDGVSSEIN---FKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWE 141 (424)
Q Consensus 80 ~~LlvlD~~~~~~~---~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~ 141 (424)
-=++++||++.... +++..|. -...|..||+|++...... .....+++++.+.+....++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 33889999886432 1222122 2334448888885322111 6678899999999999999998
Q ss_pred HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH----HHHhC---CcchHHHHHHHHHhhhcCcccccchhhhhHHHhh
Q 037045 142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG----KELAN---QSEVAIWRATADELRLTSSEEKKELEEVDRFFTL 214 (424)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a----~~l~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~ 214 (424)
.+... .....+++...|++.....-..+..+. .+-.. .-+.+..+..+..+.. ...+ -..+.|+.++.-
T Consensus 256 ka~~~--~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~-~~~~-itie~I~~~Va~ 331 (408)
T COG0593 256 KAEDR--GIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR-AGEK-ITIEDIQKIVAE 331 (408)
T ss_pred HHHhc--CCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc-cccc-CCHHHHHHHHHH
Confidence 76544 122224455566665555433333222 22111 1345666666666666 2223 444677776666
Q ss_pred hhc
Q 037045 215 VYK 217 (424)
Q Consensus 215 s~~ 217 (424)
.|+
T Consensus 332 ~y~ 334 (408)
T COG0593 332 YYN 334 (408)
T ss_pred HhC
Confidence 554
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.8e-05 Score=77.05 Aligned_cols=95 Identities=8% Similarity=0.032 Sum_probs=62.3
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|||+++.... .+.+ .+-.....+++|++|.... +.. +....+.+..++.++..+.+.+.+....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-- 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-- 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 4567999999987643 2222 1112234556666665433 222 6667788889999999999998886542
Q ss_pred CccHHHHHHHHHHhcCCchHHHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLKLI 174 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~~ 174 (424)
....++.+..|++.++|.+..+...
T Consensus 196 i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 196 IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 2334567889999999988554433
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.19 E-value=3e-05 Score=74.29 Aligned_cols=144 Identities=13% Similarity=0.219 Sum_probs=78.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.++|++|+|||++|+.+++... .. |+.+.. .++. .... ..........+...-...+++
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~~l~----~~~~----g~~~~~i~~~f~~a~~~~p~I 227 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----SELV----QKFI----GEGARLVRELFELAREKAPSI 227 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----HHHh----Hhhc----cchHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999873 32 222211 1111 1100 001111111111111245789
Q ss_pred EEEcCCCCcc------------h----hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI------------N----FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~------------~----~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
|+||+++... . +..+ .+. ....+..||.||....... ..+..+++...+.++.
T Consensus 228 lfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R 307 (389)
T PRK03992 228 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGR 307 (389)
T ss_pred EEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHH
Confidence 9999998641 1 1111 011 1223456776776533322 2356799999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++|+.+......... .....+++.+.|+-
T Consensus 308 ~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 308 LEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred HHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 9999987754321111 12455777777653
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=6.1e-05 Score=75.71 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=87.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcc-----cc-cccChhHHHHHHHH---
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKV-----NA-KELNNDLRADIISK--- 74 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~-~~~~~~~~~~~l~~--- 74 (424)
+.++|+.|+||||+|+.+++...-...+. ..++..-..++.|...-.. .. .....++....+..
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~ 113 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQY 113 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHh
Confidence 57899999999999999998763211100 0011111222222110000 00 00111111111111
Q ss_pred -HhccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045 75 -ELNDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGV 145 (424)
Q Consensus 75 -~l~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~ 145 (424)
-..++.-++|||+++.... .+.+ . +-.....+++|+ ||....+.. +....+.+.+++.++..+.+.+.+..
T Consensus 114 ~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH
Confidence 1235667999999998642 3333 1 112223445554 444444433 66889999999999999999887754
Q ss_pred cCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 146 HLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 146 ~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.. ....++....|++.++|.+....
T Consensus 194 e~--i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 194 EQ--IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred cC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 31 22234567889999999886443
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=0.00012 Score=69.64 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC--------------------CCceEEEEEeccCCCHHHHHHHHHHHhcccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR--------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKE 62 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 62 (424)
.+.++|+.|+||||+|+.+++...-.. +++ +++++........+ .+++...+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~--- 112 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDAASNNGVDD-IREILDNVKYA--- 112 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeeccccCCHHH-HHHHHHHHhcC---
Confidence 467899999999999999998863111 122 22332221112111 12222221110
Q ss_pred cChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHH
Q 037045 63 LNNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQRE 134 (424)
Q Consensus 63 ~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~ 134 (424)
-+.+++-++|+|+++... ..+.+ .+......+.+|++|.+.. +.. .....+++.++++++
T Consensus 113 ------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~ 180 (355)
T TIGR02397 113 ------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLED 180 (355)
T ss_pred ------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHH
Confidence 012345588999997763 23333 1212223455666665443 222 556788999999999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
..+.+...+.... ....++.+..+++.++|.|..+....
T Consensus 181 l~~~l~~~~~~~g--~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 181 IVERLKKILDKEG--IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 9999988775442 12235678889999999986665444
No 105
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6.2e-05 Score=74.78 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|+.|+||||+|+.+++...-.. .|.-+++++.......+++ +++.......
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~i-r~l~~~~~~~---- 114 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAM-RELLDNAQYA---- 114 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHH-HHHHHHHhhC----
Confidence 357899999999999999998763111 1111223322222122221 1222211100
Q ss_pred ChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHH
Q 037045 64 NNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREA 135 (424)
Q Consensus 64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~ 135 (424)
-..+++-++|+|+++.... .+.+ .+-.....+.+|++| ....+.. +....+++..++.++.
T Consensus 115 -----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i 183 (527)
T PRK14969 115 -----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLI 183 (527)
T ss_pred -----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHH
Confidence 0124567999999987643 3333 111222345555544 4333332 5577889999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLI 174 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~ 174 (424)
.+.+.+.+.... ....++.+..|++.++|.+. ++..+
T Consensus 184 ~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 184 VSHLQHILEQEN--IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998888775442 22335567889999999875 44443
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=7.4e-05 Score=71.24 Aligned_cols=86 Identities=8% Similarity=0.033 Sum_probs=55.4
Q ss_pred cCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|||+++.... .+.+ . +-....++.+|++|.+ ..+.+ +....+.+..++.++..+.+.+..+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----
Confidence 4556899999998642 2222 1 1122334555555544 44443 66789999999999999888754321
Q ss_pred CccHHHHHHHHHHhcCCchHH
Q 037045 150 YPDIELVADSIVKECGGMPYM 170 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Pla 170 (424)
.++.+..+++.++|.|..
T Consensus 192 ---~~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 192 ---DPETARRAARASQGHIGR 209 (394)
T ss_pred ---CHHHHHHHHHHcCCCHHH
Confidence 134577899999999853
No 107
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=5.8e-05 Score=79.17 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=81.7
Q ss_pred ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC------cchHHHHHHHHH
Q 037045 120 QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ------SEVAIWRATADE 193 (424)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~------~~~~~~~~~~~~ 193 (424)
.....+.+.+|+..+...+........ .....+....|+++..|+|+.+..+...+.+. .+...|..-...
T Consensus 209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~ 285 (849)
T COG3899 209 TNITTITLAPLSRADTNQLVAATLGCT---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS 285 (849)
T ss_pred CceeEEecCcCchhhHHHHHHHHhCCc---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh
Confidence 667889999999999999999988763 22334567889999999999999999888774 344445433222
Q ss_pred hhhcCcccccchhhhhHHHhhhhccCCcchHhHHhhhhhccCCCC
Q 037045 194 LRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLE 238 (424)
Q Consensus 194 l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp~~~~ 238 (424)
+.. .+..+.+...+....+.||...|+++...|++...++
T Consensus 286 i~~-----~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~ 325 (849)
T COG3899 286 LGI-----LATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFD 325 (849)
T ss_pred cCC-----chhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCC
Confidence 222 1111345557888999999999999999999876554
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.7e-05 Score=73.30 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=89.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE-eccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN-INTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL 76 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 76 (424)
+.++|+.|+||||+|+.+++...-....+..-|.. ...++..-...+.+......+. .....++.. .+.+.+
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~ 119 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIR-LLRENV 119 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHH-HHHHHH
Confidence 66899999999999999998774211111100100 0001111111222211111100 001112211 122222
Q ss_pred -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
.+.+-++|+|+++... .++.+ .+......+.+|++| +...+.. .....+++.++++++..+.+...+
T Consensus 120 ~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 120 RYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred hhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 2355689999998764 34444 122223355555544 4444433 456688999999999998888877
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLI 174 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~ 174 (424)
... .....++.+..|++.++|.+..+...
T Consensus 200 ~~~--g~~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 200 EAE--GISVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 543 22334667889999999988654443
No 109
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.13 E-value=2.1e-05 Score=71.25 Aligned_cols=127 Identities=19% Similarity=0.157 Sum_probs=66.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~ 81 (424)
-+.++|++|+||||+|+.+++.......-....++.+... ++... .++ +....+.+.+. ....
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~---~~g---------~~~~~~~~~~~~a~~~ 107 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE---YIG---------HTAQKTREVIKKALGG 107 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh---hcc---------chHHHHHHHHHhccCC
Confidence 3679999999999999999987531111111112222221 11111 000 00111122221 1245
Q ss_pred EEEEcCCCCcc----------hhhhh--ccCCCCCCcEEEEEecchhh----------hcccCceEEecCCCHHHHHHHH
Q 037045 82 VLFLDGVSSEI----------NFKEI--GMHDDHGRGKVVFACRSREF----------CWQADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 82 LlvlD~~~~~~----------~~~~~--~~~~~~~~~~iiittr~~~~----------~~~~~~~~~l~~l~~~~~~~l~ 139 (424)
+|++|+++... .++.+ .+........+|+++..... .......+++++++.++..+++
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il 187 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIA 187 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHH
Confidence 89999998632 22333 11122233345555543322 1133456899999999999999
Q ss_pred HHHhcc
Q 037045 140 WEVVGV 145 (424)
Q Consensus 140 ~~~~~~ 145 (424)
.+.+..
T Consensus 188 ~~~~~~ 193 (261)
T TIGR02881 188 ERMVKE 193 (261)
T ss_pred HHHHHH
Confidence 888754
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00012 Score=73.41 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 79 RSYVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 79 ~~~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
+.-++|||+++... .++.+ . +-.....+++|++| ....+.. +....+++..++.++..+.+.+.+.... .
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg--i 201 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--V 201 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--C
Confidence 44589999999864 23333 1 11222345566555 4333333 7788999999999999999988876542 2
Q ss_pred ccHHHHHHHHHHhcCCchHHHHH
Q 037045 151 PDIELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai~~ 173 (424)
...++.+..|++.++|.+..+..
T Consensus 202 ~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 202 PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 23355678899999998754443
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.0001 Score=73.55 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH-
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE- 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~- 75 (424)
.+.++|+.|+||||+|+.+++...-....+. ..++.-...+.+........ .....++ +..+.+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~-iR~L~~~~ 111 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDD-AKRLKEAI 111 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCCceEEEecccccCHHH-HHHHHHHH
Confidence 4668999999999999999988742111110 01111111222211110000 0001111 1112111
Q ss_pred ----hccCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 76 ----LNDRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 76 ----l~~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
..+++-++|||+++... ..+.+ ... .......+|++|.. ..+.. .....+++..++.++..+.+.+.+
T Consensus 112 ~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 112 GYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred HhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHH
Confidence 13456799999998763 23333 111 22234555555544 33332 556788999999999999998877
Q ss_pred cccCCCCccHHHHHHHHHHhcCCch-HHHHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMP-YMLKLIGKEL 178 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~a~~l 178 (424)
.... ....++.+..|++.++|.+ .++..+...+
T Consensus 192 ~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 192 GREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5442 2234567888999999965 5666665443
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=9.3e-05 Score=73.10 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 63 (424)
.+.++|+.|+||||+|+.+++...-.. .+.-++.++.......+++ +++...+...
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~---- 114 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA---- 114 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc----
Confidence 357899999999999999998763111 1111333333323333332 1222222111
Q ss_pred ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHH
Q 037045 64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREA 135 (424)
Q Consensus 64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~ 135 (424)
-..++.-++|||+++... ..+.+ .+-.....+++|++|. ...+.. +....+++..++.++.
T Consensus 115 -----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i 183 (509)
T PRK14958 115 -----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI 183 (509)
T ss_pred -----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHH
Confidence 012455689999999763 23333 1112223466665544 333332 6677889999999998
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.+.+.+.+.... ....++....|++.++|.+..+.
T Consensus 184 ~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 184 AAHCQHLLKEEN--VEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHH
Confidence 888887776542 22234567789999999885443
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.4e-07 Score=92.28 Aligned_cols=121 Identities=19% Similarity=0.119 Sum_probs=57.9
Q ss_pred eEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeecccc
Q 037045 266 KRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSC 343 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~ 343 (424)
...+.+.|.+..+.. ..-++.|+.|++++|+++++.. +..++.|+.||+++|.+..+|.- ..+.. |+.|++ ++
T Consensus 167 ~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l--rn 241 (1096)
T KOG1859|consen 167 ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN--LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL--RN 241 (1096)
T ss_pred hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH--HHhcccccccccccchhccccccchhhhh-heeeee--cc
Confidence 334445555554332 2334455556666666555542 44555555556665555444431 11122 555555 45
Q ss_pred cccccCChhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeeccccC
Q 037045 344 SLLLQLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~ 392 (424)
|.+.++- .+-++.+|+.||+++|-+...- ..++.+..|+.|.+.+|++
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5544442 2444555555555555433211 1245555555555555543
No 114
>PRK08118 topology modulation protein; Reviewed
Probab=98.07 E-value=1.1e-05 Score=67.57 Aligned_cols=37 Identities=35% Similarity=0.686 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccC-CCCceEEEE
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGES-RRFDIIFWE 37 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv 37 (424)
|+.|.|+|++|+||||||+.+++..... .+||.++|-
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5679999999999999999999998543 557778763
No 115
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.0001 Score=69.27 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC--CceEEEEEeccCCCHHHHHHHHHHH-------hccc--c------cccCh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR--FDIIFWENINTDGNIRDIQEIILER-------LKVN--A------KELNN 65 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~-------l~~~--~------~~~~~ 65 (424)
.+.|+|+.|+||||+|..+++...-... +... ....++......+.+... +..+ . .....
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v 123 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV 123 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH
Confidence 4788999999999999999998742111 1111 011111111233333222 1000 0 11122
Q ss_pred hHHHHHHHHHhc-----cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcE-EEEEecchhhhc---ccCceEEecCCCH
Q 037045 66 DLRADIISKELN-----DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGK-VVFACRSREFCW---QADGVIHVQQLCQ 132 (424)
Q Consensus 66 ~~~~~~l~~~l~-----~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~-iiittr~~~~~~---~~~~~~~l~~l~~ 132 (424)
++ +..+.+.+. ++.-++|||+++.... .+.+ .+.....++. |++|++...+.+ +....+.+.+++.
T Consensus 124 d~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~ 202 (351)
T PRK09112 124 DE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDD 202 (351)
T ss_pred HH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCH
Confidence 22 223333332 3566999999998642 2222 1111122344 455555444434 7778999999999
Q ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
++..+++.+..... . ..++.+..+++.++|.|....
T Consensus 203 ~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 203 DELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred HHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHH
Confidence 99999998743221 1 224557789999999997543
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00017 Score=72.50 Aligned_cols=166 Identities=15% Similarity=0.083 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC-c-eEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF-D-IIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~ 74 (424)
-+.++|+.|+||||+|+.+++...-.... . +..+-.++. -...+.+...-.... .....++... +.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie 122 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAIMEGRHVDVLEMDAASHTGVDDIRE-IIE 122 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHHhcCCCCceEEecccccCCHHHHHH-HHH
Confidence 46789999999999999999876311111 0 001101111 111122221111100 1111222111 111
Q ss_pred Hh-----ccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHH
Q 037045 75 EL-----NDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWE 141 (424)
Q Consensus 75 ~l-----~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~ 141 (424)
.. .+++-++|+|+++.... .+.+ .+-.....+++|++| ....+.. +....+++..++.++..+.+.+
T Consensus 123 ~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 123 SVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSR 202 (598)
T ss_pred HHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 11 23456899999987643 3333 111223356665555 4333333 6778899999999999999988
Q ss_pred HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
.+... .....++.+..|++.++|.+..+....
T Consensus 203 i~~ke--gi~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 203 IAAKE--GVEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 87654 222334677889999999986654444
No 117
>PTZ00202 tuzin; Provisional
Probab=98.06 E-value=0.00027 Score=66.77 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----- 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----- 76 (424)
++++|.|++|+|||||++.+..... ...++++.. +..++++.++.+++.+.. ....++...+.+.+
T Consensus 287 rivvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~ 357 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSVVKALGVPNV-EACGDLLDFISEACRRAKK 357 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999997662 113333333 679999999999997442 22234444444433
Q ss_pred c-cCcEEEEEcCCCCcchhhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHHHHHh
Q 037045 77 N-DRSYVLFLDGVSSEINFKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 77 ~-~~~~LlvlD~~~~~~~~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
. +++.+||+- +.+.+.+... .+.....-|.|++----+.... +.-..|-+..|+.++|.++-++..
T Consensus 358 e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 358 MNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2 456666664 3333332222 3336667788887554444433 444567788999999999987766
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00026 Score=67.69 Aligned_cols=152 Identities=14% Similarity=0.226 Sum_probs=86.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccC------CCCce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGES------RRFDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 75 (424)
.+.++|+.|+|||++|+.+++..... ..|.. ++-++.......+++ .++..++... -
T Consensus 41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~~---------------p 104 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRIP---------------P 104 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhhc---------------c
Confidence 57799999999999999998876321 11221 222221111122222 1222221100 0
Q ss_pred hccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHhcccC
Q 037045 76 LNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHL 147 (424)
Q Consensus 76 l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 147 (424)
+.+++-++|+|+++.... ++.+ .+......+.+|+++. ...... .....+++.++++++....+.+.+....
T Consensus 105 ~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 105 QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcC
Confidence 123455899999986532 3333 1112223445555553 323222 5566899999999999999888775542
Q ss_pred CCCccHHHHHHHHHHhcCCchHHHH
Q 037045 148 KKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 148 ~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
....++.+..+++.++|.+..+.
T Consensus 185 --~~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 185 --IKFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred --CCCCHHHHHHHHHhCCCCHHHHH
Confidence 22335678889999999775443
No 119
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.04 E-value=2.2e-05 Score=63.53 Aligned_cols=89 Identities=22% Similarity=0.178 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS- 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~- 80 (424)
+.+.|+|++|+||||+++.++.... .....+++++.+........... ...................+.+..+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999884 32235677776654333222221 1111111122222222334444444444
Q ss_pred EEEEEcCCCCcch
Q 037045 81 YVLFLDGVSSEIN 93 (424)
Q Consensus 81 ~LlvlD~~~~~~~ 93 (424)
.++++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999988643
No 120
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=5.8e-07 Score=70.06 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=40.4
Q ss_pred ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecC
Q 037045 287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSH 366 (424)
Q Consensus 287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~ 366 (424)
|+..++++|.+.++|+.+...++..+.|++++|.+.++|..+-.++.|+.+|+ +.|.+...|.-+..+.+|..|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl--~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL--RFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc--ccCccccchHHHHHHHhHHHhcCCC
Confidence 44444444444444444333334444444444444444444444444555554 4444444444444444444444444
Q ss_pred CcCcccch
Q 037045 367 TKVQCLPS 374 (424)
Q Consensus 367 ~~i~~lp~ 374 (424)
|.+..+|-
T Consensus 133 na~~eid~ 140 (177)
T KOG4579|consen 133 NARAEIDV 140 (177)
T ss_pred CccccCcH
Confidence 44444443
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00031 Score=69.21 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=62.9
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecch-hhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSR-EFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~-~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|+|+++.... .+.+ .+-.....+.+|++|... .+.. .....+++.+++.++..+.+.+.+....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-- 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-- 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 3456899999987643 2333 111223456666666543 2222 6678999999999999999988776542
Q ss_pred CccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
....++.+..|++.++|.+..+....
T Consensus 194 i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 194 VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 22335678899999999985554443
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00014 Score=72.12 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=84.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---c---ccChhHHHHHHHHH-
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---K---ELNNDLRADIISKE- 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~---~~~~~~~~~~l~~~- 75 (424)
.+.++|+.|+||||+|+.+++...-.. |... ..++....++.+........ + ....++... +.+.
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IRe-Ii~~~ 111 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRN-IIDNI 111 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCCCCceEEeccccccCHHHHHH-HHHHH
Confidence 467899999999999999998863111 1110 01111112222211110000 0 011111111 1111
Q ss_pred ----hccCcEEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 76 ----LNDRSYVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 76 ----l~~~~~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
..+++-++|+|+++... ..+.+ . +-.....+.+|+ |+....+.. .....+++.++++++....+.+.+
T Consensus 112 ~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 112 NYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred HhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 11234479999998753 23333 1 111222444444 444433332 667789999999999999998877
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai 171 (424)
.... ....++.+..+++.++|.+..+
T Consensus 192 ~keg--i~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 192 KKEK--IKIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred HHcC--CCCCHHHHHHHHHHcCCcHHHH
Confidence 5431 1223556788999999977533
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.02 E-value=0.00015 Score=70.99 Aligned_cols=134 Identities=17% Similarity=0.243 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC---CCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-cc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR---RFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-ND 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~ 78 (424)
-+.++|++|+|||++|+.+++...... ......|+.+.... +.... .+. ............++.. .+
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----Ll~ky---vGe--te~~ir~iF~~Ar~~a~~g 288 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----LLNKY---VGE--TERQIRLIFQRAREKASDG 288 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----hcccc---cch--HHHHHHHHHHHHHHHhhcC
Confidence 378999999999999999999874211 11234455543321 11000 000 0000011111222211 24
Q ss_pred CcEEEEEcCCCCcc---------hh-----hhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHH
Q 037045 79 RSYVLFLDGVSSEI---------NF-----KEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQR 133 (424)
Q Consensus 79 ~~~LlvlD~~~~~~---------~~-----~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~ 133 (424)
++++++||+++... +. ..+ .+. ....+..||.||....... .-+..++++..+.+
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e 368 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAE 368 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHH
Confidence 68999999997531 11 122 011 1112334455554433322 33566899999999
Q ss_pred HHHHHHHHHhcc
Q 037045 134 EAKKLFWEVVGV 145 (424)
Q Consensus 134 ~~~~l~~~~~~~ 145 (424)
+..++|..+...
T Consensus 369 ~r~~Il~~~l~~ 380 (512)
T TIGR03689 369 AAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=0.00025 Score=64.95 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=70.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.++|++|+|||++|+.+++.......-...-|+.++ ..++.... .+.. .......+.+ ...-+|
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~~-----~~~~~~~l~~---a~ggVL 126 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGHT-----APKTKEVLKK---AMGGVL 126 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hccc-----hHHHHHHHHH---ccCCEE
Confidence 6789999999999999998876321111111133333 11222111 1111 1111112222 123599
Q ss_pred EEcCCCCc-----------chhhhh--ccCCCCCCcEEEEEecchhhh----------cccCceEEecCCCHHHHHHHHH
Q 037045 84 FLDGVSSE-----------INFKEI--GMHDDHGRGKVVFACRSREFC----------WQADGVIHVQQLCQREAKKLFW 140 (424)
Q Consensus 84 vlD~~~~~-----------~~~~~~--~~~~~~~~~~iiittr~~~~~----------~~~~~~~~l~~l~~~~~~~l~~ 140 (424)
+||+++.. +..+.+ .+.....+..||+++....+. ..-...+++++++.+|..+++.
T Consensus 127 fIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~ 206 (287)
T CHL00181 127 FIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAK 206 (287)
T ss_pred EEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHH
Confidence 99999753 112222 112333456676776533321 1456689999999999999998
Q ss_pred HHhccc
Q 037045 141 EVVGVH 146 (424)
Q Consensus 141 ~~~~~~ 146 (424)
..+...
T Consensus 207 ~~l~~~ 212 (287)
T CHL00181 207 IMLEEQ 212 (287)
T ss_pred HHHHHh
Confidence 887543
No 125
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=8.6e-07 Score=69.13 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=85.9
Q ss_pred ccEEEccCCCCCCCChHH--hcccCCCcEEEccCCCCCcCChhhhc-ccccceeeecccccccccCChhhhccCCCCEEE
Q 037045 287 ILTLILEGKRLEKLPTSF--FDYMCHLQLLDLHETNIGCLPPSISR-LINLNALFLRSSCSLLLQLPAEIGRLQKLEILD 363 (424)
Q Consensus 287 L~~L~l~~~~l~~~~~~~--~~~~~~L~~L~l~~~~~~~~p~~~~~-l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~ 363 (424)
+-.+++++|.+..++... +.....|..+++++|.+.++|+.|.. ++.++++|+ .++.+.++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl--~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNL--ANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhc--chhhhhhchHHHhhhHHhhhcc
Confidence 445677777776554432 23345677789999999999988864 568999999 9999999999999999999999
Q ss_pred ecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045 364 VSHTKVQCLPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 364 l~~~~i~~lp~~i~~l~~L~~l~l~~n~~ 392 (424)
+++|++...|.-+..+.+|..|+...|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 99999999998888899999999888853
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00026 Score=71.27 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE-eccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN-INTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
-+.++|+.|+||||+|+.+++...-....+.-.|.. ....+..-...+.+...-..+. .....++... +.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~ 118 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQ-LREN 118 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHH-HHHH
Confidence 367899999999999999998874211111011110 0011111122222211111110 0011122222 1122
Q ss_pred h-----ccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045 76 L-----NDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQREAKKLFWEV 142 (424)
Q Consensus 76 l-----~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~ 142 (424)
+ .+.+-++|+|+++.... .+.+ . +-.-...+.+| +|++...+.. .....+++..++.++..+.+.+.
T Consensus 119 ~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 119 VRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred HHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence 2 24456889999987643 3333 1 11222334444 4444444433 67889999999999998888877
Q ss_pred hcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045 143 VGVHLKKYPDIELVADSIVKECGGMPYM 170 (424)
Q Consensus 143 ~~~~~~~~~~~~~~~~~I~~~~~g~Pla 170 (424)
+... .....++.+..|++.++|..-.
T Consensus 199 ~~~e--gi~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 199 CRAE--GIQIDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHHc--CCCCCHHHHHHHHHHhCCCHHH
Confidence 6543 1223356788899999996653
No 127
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.00 E-value=1.2e-05 Score=64.53 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6799999999999999999998
No 128
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.00 E-value=0.00012 Score=70.01 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=79.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+-+.++|++|+|||++|+.+++.. ...| +.+.. ..+... ..+ .........+.......++
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s~l~~k---~~g-----e~~~~lr~lf~~A~~~~P~ 240 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------SEFVQK---YLG-----EGPRMVRDVFRLARENAPS 240 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------HHHHHH---hcc-----hhHHHHHHHHHHHHhcCCe
Confidence 347899999999999999999976 3333 12211 111111 011 0111111222222235689
Q ss_pred EEEEcCCCCcc------------h----hhhh-c-cC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEI------------N----FKEI-G-MH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~------------~----~~~~-~-~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
+|+||+++... . +..+ . +- ....+..+|.||....... ..+..+++...+.++
T Consensus 241 ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred EEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 99999977431 1 1111 0 00 1224557777777544333 345678898889999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
..++|+.......... +....++++.+.|+-
T Consensus 321 R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s 351 (398)
T PTZ00454 321 KRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence 8888887765431111 112445677776653
No 129
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1e-05 Score=67.44 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=66.8
Q ss_pred cCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhc-cCCCCEEEecCCcCcccch--hhhcCCCCCE
Q 037045 308 MCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGR-LQKLEILDVSHTKVQCLPS--EIGQLIELKY 384 (424)
Q Consensus 308 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~ 384 (424)
..+...+|+++|.+..++ .+..++.|.+|.+ ++|++.++-+.++. +++|..|.+.+|+++.+.+ .+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll--~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLL--NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEe--cCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 345666777777664442 2455777777777 77777777555543 4567777777777665432 3667777888
Q ss_pred eeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 385 LRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 385 l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
|.+-+|+.. .........+.++++|++||
T Consensus 118 Ltll~Npv~---------~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 118 LTLLGNPVE---------HKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred eeecCCchh---------cccCceeEEEEecCcceEee
Confidence 877777542 23456666777777777776
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00025 Score=71.92 Aligned_cols=93 Identities=8% Similarity=-0.014 Sum_probs=59.0
Q ss_pred cCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcE-EEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGK-VVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~-iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|+|+++... .+..+ ... .....+. |++|++...+.. .....+++.+++.++..+.+...+....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-- 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-- 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence 456699999998763 33333 111 1122344 445555544443 6677999999999999988887765431
Q ss_pred CccHHHHHHHHHHhcCCchHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
....++.+..|++.++|.+..+.
T Consensus 195 I~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 195 ISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22224567889999999775433
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00034 Score=72.74 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=86.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC----------------------CceEEEEEeccCCCHHHHHHHHHHHhcccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR----------------------FDIIFWENINTDGNIRDIQEIILERLKVNA 60 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 60 (424)
.+.++|+.|+||||+|+.+++...-... ++ +++++......++++. ++...+.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eidaas~~~Vd~iR-~l~~~~~--- 113 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDAASHGGVDDAR-ELRERAF--- 113 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecccccCCHHHHH-HHHHHHH---
Confidence 4678999999999999999988741111 11 2222221111222221 1111110
Q ss_pred cccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCH
Q 037045 61 KELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQ 132 (424)
Q Consensus 61 ~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~ 132 (424)
..-..++.-++|||+++.+.. .+.+ . +-.-...+.+|++| ....+.. +....+++..++.
T Consensus 114 ------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~ 181 (824)
T PRK07764 114 ------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPP 181 (824)
T ss_pred ------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCH
Confidence 011234556899999998642 3333 1 11223455555554 4433433 6788999999999
Q ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045 133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai 171 (424)
++..+.+.+.+.... .....+....|++.++|.+..+
T Consensus 182 ~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 182 EVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999888765442 2223456678999999988443
No 132
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.95 E-value=0.00023 Score=62.49 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI 39 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 39 (424)
-++|.|..|+||||++..+.... ...|+++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence 36899999999999999999987 678888877653
No 133
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0004 Score=69.48 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=60.6
Q ss_pred cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|||+++... ..+.+ .+-.....+.+| +||....+.. +....+++..++.++..+.+.+.+....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-- 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-- 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence 455689999998763 23333 111222344444 5555544443 6678999999999999999988776542
Q ss_pred CccHHHHHHHHHHhcCCchH-HHHHH
Q 037045 150 YPDIELVADSIVKECGGMPY-MLKLI 174 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Pl-ai~~~ 174 (424)
....++.+..|++.++|.+. ++..+
T Consensus 195 i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 195 VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22235567889999999874 33333
No 134
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00011 Score=65.74 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc--CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE--SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 79 (424)
|+|.+|||+|+|||+|++.+++...+ .+.|....-+.++.. .++.... .+.........+.+.+...++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWF-sESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWF-SESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHH-hhhhhHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999865 233332222332221 1111111 112223334445555556565
Q ss_pred c--EEEEEcCCCCc
Q 037045 80 S--YVLFLDGVSSE 91 (424)
Q Consensus 80 ~--~LlvlD~~~~~ 91 (424)
. +.+.+|.|+..
T Consensus 249 ~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 249 GNLVFVLIDEVESL 262 (423)
T ss_pred CcEEEEEeHHHHHH
Confidence 4 45667888764
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.94 E-value=0.00037 Score=63.81 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.++|++|+|||++|+.+++...........-++.++. .++. ..+.... .......+.+ ...-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g~~----~~~~~~~~~~---a~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIGHT----APKTKEILKR---AMGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhcccc----hHHHHHHHHH---ccCcE
Confidence 377999999999999988887763222221112333332 1222 1111111 1111112222 13468
Q ss_pred EEEcCCCCc-----------chhhhh--ccCCCCCCcEEEEEecchhhhc----------ccCceEEecCCCHHHHHHHH
Q 037045 83 LFLDGVSSE-----------INFKEI--GMHDDHGRGKVVFACRSREFCW----------QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 83 lvlD~~~~~-----------~~~~~~--~~~~~~~~~~iiittr~~~~~~----------~~~~~~~l~~l~~~~~~~l~ 139 (424)
|+||+++.. ...+.+ .+.....+..||.++....... .....+++++++.+|..+++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 999999743 112222 1112334456666654322111 22567999999999999999
Q ss_pred HHHhccc
Q 037045 140 WEVVGVH 146 (424)
Q Consensus 140 ~~~~~~~ 146 (424)
.+.+...
T Consensus 205 ~~~l~~~ 211 (284)
T TIGR02880 205 GLMLKEQ 211 (284)
T ss_pred HHHHHHh
Confidence 8887543
No 136
>PRK07261 topology modulation protein; Provisional
Probab=97.93 E-value=4.6e-05 Score=64.19 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc-CCCCceEEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE-SRRFDIIFW 36 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f~~~~w 36 (424)
.|+|+|++|+||||||++++..... .-+.|.+.|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4899999999999999999987632 224455666
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.92 E-value=5.2e-05 Score=73.02 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||++|+.+++.. ...|- .+. .. + +... ..+ .........+.......+++
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el--~~~fi---~V~--~s-e---L~~k---~~G-----e~~~~vr~lF~~A~~~~P~I 279 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANET--SATFL---RVV--GS-E---LIQK---YLG-----DGPKLVRELFRVAEENAPSI 279 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh--CCCEE---EEe--cc-h---hhhh---hcc-----hHHHHHHHHHHHHHhCCCcE
Confidence 47899999999999999999987 34431 121 11 1 1110 000 00111111222222356789
Q ss_pred EEEcCCCCcc------------h----hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI------------N----FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~------------~----~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
++||+++... . +.++ .+- ....+..||.||....... ..+..+++...+.++.
T Consensus 280 LfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred EeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence 9999976421 0 1111 000 1233557777777544433 3456789999999999
Q ss_pred HHHHHHHhcccC-CCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVHL-KKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++|..+..+.. ..... ...++..+.|+-
T Consensus 360 ~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 360 RRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred HHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 999998775431 11222 344565665543
No 138
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00057 Score=69.18 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 76 (424)
.+.++|+.|+||||+|+.+++...-..... -...++.....+.+........ .....++. ..+.+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~ 112 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDA-REIIERV 112 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHH-HHHHHHH
Confidence 357899999999999999998873111100 0011122223333332221111 01111211 1111211
Q ss_pred -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
.+.+-++|||+++... ..+.+ .+-.....+.+|+++.. ..+.. .....+++..++.++..+.+.+.+
T Consensus 113 ~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 113 QFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred hhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence 2356699999998763 24444 11122234555555543 33332 556788999999999999888877
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
.... ....++.+..|++.++|.+..+....
T Consensus 193 ~~eg--l~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 193 AAEG--INLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5542 12335678889999999886554443
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.92 E-value=0.00014 Score=64.77 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--cc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--ND 78 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~ 78 (424)
+....|||+|+|||+-|..++...--.+-| .+++-.+++......-.-.++ .+.+.......... ..
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki----------k~fakl~~~~~~~~~~~~ 127 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI----------KNFAKLTVLLKRSDGYPC 127 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh----------cCHHHHhhccccccCCCC
Confidence 456789999999999999999887533444 334444443332211011111 00000000000000 01
Q ss_pred Cc-EEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 79 RS-YVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 79 ~~-~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+. -++|||+++.+. .|..+ . +-.....++.++.+.+-.... +....+..+.|..++.++-++..+..+.
T Consensus 128 ~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-- 205 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG-- 205 (346)
T ss_pred CcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--
Confidence 33 489999999873 45555 1 124445555555444433333 7778889999999999999999987762
Q ss_pred CccHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 037045 150 YPDIELVADSIVKECGGMPYMLKLIGKELA 179 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~~a~~l~ 179 (424)
.....+..+.|++.++|.-.-.....+.+.
T Consensus 206 v~~d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 206 VDIDDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 333456788999999997654444444443
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.91 E-value=0.00029 Score=71.43 Aligned_cols=56 Identities=5% Similarity=-0.061 Sum_probs=36.4
Q ss_pred ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045 120 QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177 (424)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~ 177 (424)
.....+.+.+++.+|..+++.+.+.... ....++....|.+.+..-+.++..++..
T Consensus 343 SR~~~i~~~pls~edi~~Il~~~a~~~~--v~ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 343 SRCAEVFFEPLTPEDIALIVLNAAEKIN--VHLAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred hceeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4556788999999999999998876432 1122445556666555446666655543
No 141
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00063 Score=63.40 Aligned_cols=87 Identities=8% Similarity=0.057 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 79 RSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
++-++|||+++.+.. .+.+ . +-....++.+|++|.+..... +....+.+.+++.+++.+.+.......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~---- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES---- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC----
Confidence 344567899998642 2222 1 111224566666666654433 778889999999999999887654211
Q ss_pred ccHHHHHHHHHHhcCCchHHH
Q 037045 151 PDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai 171 (424)
.++.+..++..++|.|...
T Consensus 182 --~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRA 200 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHH
Confidence 1334567889999999643
No 142
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=7e-05 Score=70.79 Aligned_cols=91 Identities=5% Similarity=-0.019 Sum_probs=58.3
Q ss_pred cCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+..-++|+|+++.... ...+ . +-....++.+|++|.... +.+ +....+.+.+++.++..+++.+.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 3567999999987642 2222 1 112223455666665543 332 778899999999999999998765321
Q ss_pred CccHHHHHHHHHHhcCCchHHHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLKLI 174 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~~ 174 (424)
. ++....+++.++|.|.....+
T Consensus 217 --~-~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 --P-DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --C-HHHHHHHHHHcCCCHHHHHHH
Confidence 1 122367899999999754333
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00061 Score=67.02 Aligned_cols=96 Identities=8% Similarity=0.015 Sum_probs=60.5
Q ss_pred cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|+|+++... ..+.+ .+........+|+ |++...+.. .....+.+.+++.++..+.+.+.+....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-- 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-- 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 456799999998663 23333 1112222344444 444333332 5567899999999999999888775432
Q ss_pred CccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
....++.+..|++.++|.+..+....
T Consensus 196 i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 196 IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22335667889999999876554444
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2e-06 Score=83.45 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=78.7
Q ss_pred cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~ 341 (424)
.+++.|++.+|.+..+.. ...+.+|+.|++++|.++.+.. +..++.|+.|++++|.+..+.. +..+.+|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l-- 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL-- 169 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-CccchhhhcccC--
Confidence 788888888888888777 7888888888888888887766 4566778888888888766643 445778888888
Q ss_pred cccccccCChh-hhccCCCCEEEecCCcCccc
Q 037045 342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCL 372 (424)
Q Consensus 342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~l 372 (424)
+.+.+..+... ...+.+|..+.+.+|.+..+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 77777766553 46667777777777766544
No 145
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.88 E-value=0.00062 Score=66.74 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.++|++|+|||.+|+.+++... ..| +-++.+. +... ....+.......+...-...+++
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~----------l~~~----~vGese~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK----------LFGG----IVGESESRMRQMIRIAEALSPCI 321 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH----------hccc----ccChHHHHHHHHHHHHHhcCCcE
Confidence 478999999999999999999873 332 2222211 0000 00011111111122111246899
Q ss_pred EEEcCCCCcch--------------hhhh-c-cCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHHH
Q 037045 83 LFLDGVSSEIN--------------FKEI-G-MHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 83 lvlD~~~~~~~--------------~~~~-~-~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l~ 139 (424)
|+||+++.... +..+ . +.....+--||.||....... .-+..+.++.-+.++-.++|
T Consensus 322 L~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il 401 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIF 401 (489)
T ss_pred EEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHH
Confidence 99999975310 1111 0 011222233455665443222 44567888888999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 140 WEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
+.+..+.... ...+.....+++.+.|+-
T Consensus 402 ~~~l~~~~~~-~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 402 KIHLQKFRPK-SWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHhhcCCC-cccccCHHHHHhhcCCCC
Confidence 8887653111 111223556777777764
No 146
>PRK08116 hypothetical protein; Validated
Probab=97.88 E-value=4.2e-05 Score=69.25 Aligned_cols=99 Identities=15% Similarity=0.253 Sum_probs=56.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|..|+|||.||..+++.... ....+++++ ..+++..+...+.... ......+.+.+.+-. |
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~d-l 181 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVNAD-L 181 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcCCC-E
Confidence 3789999999999999999999842 333456655 3445555544433211 111222333344444 8
Q ss_pred EEEcCCCC--cchhhhh-ccC----CCCCCcEEEEEecch
Q 037045 83 LFLDGVSS--EINFKEI-GMH----DDHGRGKVVFACRSR 115 (424)
Q Consensus 83 lvlD~~~~--~~~~~~~-~~~----~~~~~~~iiittr~~ 115 (424)
|||||+.. ..+|..- .+. ....+..+|+||...
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99999953 3333221 111 233456788888643
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.88 E-value=0.00017 Score=67.49 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=78.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
.++.++|++|+|||++|+.+++.. ... ...++... .....+...+.. +... ..+.+..-
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~~~i~~~l~~-~~~~--------------~~~~~~~~ 102 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRIDFVRNRLTR-FAST--------------VSLTGGGK 102 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccHHHHHHHHHH-HHHh--------------hcccCCCe
Confidence 356679999999999999999876 222 23444443 122221111111 0000 00113456
Q ss_pred EEEEcCCCCcc--h-hhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhccc-----C
Q 037045 82 VLFLDGVSSEI--N-FKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVH-----L 147 (424)
Q Consensus 82 LlvlD~~~~~~--~-~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~-----~ 147 (424)
++|+|+++... . .+.+ . +.....++.+|+||....... .....+.+...+.++..+++....... .
T Consensus 103 vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~ 182 (316)
T PHA02544 103 VIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEA 182 (316)
T ss_pred EEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999998661 1 1222 1 113345678888886543222 555678887888888776654322110 1
Q ss_pred CCCccHHHHHHHHHHhcCCchH
Q 037045 148 KKYPDIELVADSIVKECGGMPY 169 (424)
Q Consensus 148 ~~~~~~~~~~~~I~~~~~g~Pl 169 (424)
...+..++....+++...|.-.
T Consensus 183 ~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 183 EGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred cCCCCCHHHHHHHHHhcCCCHH
Confidence 1122223455667776666443
No 148
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00086 Score=65.46 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=59.0
Q ss_pred cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+.+-++|+|+++... ..+.+ .+-.....+.+|++|. ...+.. .....+++..+++++..+.+.+.+... .
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e--g 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE--G 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc--C
Confidence 456789999998653 23333 1112223555665553 333332 667789999999999999888876543 1
Q ss_pred CccHHHHHHHHHHhcCCchHHH
Q 037045 150 YPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai 171 (424)
....++.+..|++.++|.+..+
T Consensus 198 ~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 198 IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 2233567888999999977433
No 149
>CHL00176 ftsH cell division protein; Validated
Probab=97.87 E-value=0.00041 Score=70.27 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=83.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.++|++|+|||++|+.++.... .. |+.++. .++.... .+ .........+.+.....+++
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s~f~~~~---~g-----~~~~~vr~lF~~A~~~~P~I 278 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----SEFVEMF---VG-----VGAARVRDLFKKAKENSPCI 278 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----HHHHHHh---hh-----hhHHHHHHHHHHHhcCCCcE
Confidence 478999999999999999998762 22 222221 1111110 00 01111222333444567899
Q ss_pred EEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
|+||+++... .+..+ .+. ....+..+|.||....... ..+..+.++..+.++-
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 9999997541 11222 000 1223345555555433222 3457888999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLK 172 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~ 172 (424)
.++++.++... ....+.....+++.+.| .+..|.
T Consensus 359 ~~IL~~~l~~~---~~~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 359 LDILKVHARNK---KLSPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred HHHHHHHHhhc---ccchhHHHHHHHhcCCCCCHHHHH
Confidence 99998887653 11223456778888887 333343
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=0.00017 Score=75.85 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCC----Cce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRR----FDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-- 76 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-- 76 (424)
+.++|++|+||||+|+.++++.....- .+. ++.++++.-........+ .+...+.+.+..
T Consensus 211 ~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge-------------~e~~lk~ii~e~~~ 277 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE-------------FENRLKSVIDEVKA 277 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH-------------HHHHHHHHHHHHHh
Confidence 569999999999999999998742111 122 333443321000000000 001111111111
Q ss_pred ccCcEEEEEcCCCCcc---------hhhhhccCCCCCC-cEEEEEecchhhhc---------ccCceEEecCCCHHHHHH
Q 037045 77 NDRSYVLFLDGVSSEI---------NFKEIGMHDDHGR-GKVVFACRSREFCW---------QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 77 ~~~~~LlvlD~~~~~~---------~~~~~~~~~~~~~-~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~ 137 (424)
.+.+++|+||+++... +...+..|.-..| -++|-+|....+.+ .....+.+++++.+++.+
T Consensus 278 ~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~ 357 (852)
T TIGR03345 278 SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIR 357 (852)
T ss_pred cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHH
Confidence 1468999999987642 2222323323333 35666666533211 566789999999999999
Q ss_pred HHHHHhccc--CCCCccHHHHHHHHHHhcCCch
Q 037045 138 LFWEVVGVH--LKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 138 l~~~~~~~~--~~~~~~~~~~~~~I~~~~~g~P 168 (424)
+++.....- ...-...++....+++.+.++.
T Consensus 358 iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 358 MLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 975444221 1122333556677888887655
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.0013 Score=58.16 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=86.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.++|++|.||||||.-+++...+. + -+.-+....-..-+-.++..+ ...=++
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDlaaiLt~L---------------------e~~DVL 107 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLAAILTNL---------------------EEGDVL 107 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHHHHHhcC---------------------CcCCeE
Confidence 6789999999999999999998431 1 111111111111111122211 223355
Q ss_pred EEcCCCCcc---------hhhhh--ccC-CCCCCcE-----------EEEEecchhhhc----ccCceEEecCCCHHHHH
Q 037045 84 FLDGVSSEI---------NFKEI--GMH-DDHGRGK-----------VVFACRSREFCW----QADGVIHVQQLCQREAK 136 (424)
Q Consensus 84 vlD~~~~~~---------~~~~~--~~~-~~~~~~~-----------iiittr~~~~~~----~~~~~~~l~~l~~~~~~ 136 (424)
.+|.++... .++.+ .+. -.+++++ |=-|||.-.... ....+.+++-.+.+|-.
T Consensus 108 FIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~ 187 (332)
T COG2255 108 FIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELE 187 (332)
T ss_pred EEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHH
Confidence 667776542 12222 000 1122222 335888766665 55667789999999999
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
+.+.+.+..- .....++.+.+|++...|-|.-..-+...+
T Consensus 188 ~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 188 EIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 9999888544 233346678999999999996544444333
No 152
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00035 Score=67.84 Aligned_cols=142 Identities=14% Similarity=0.218 Sum_probs=81.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
|.+||++|+|||.||+.++.... -. ++.++.+ +|...+. ..+++...+.+.+..+..+|++
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isAp--------eivSGvS----GESEkkiRelF~~A~~~aPciv 286 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELG--VP-----FLSISAP--------EIVSGVS----GESEKKIRELFDQAKSNAPCIV 286 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecch--------hhhcccC----cccHHHHHHHHHHHhccCCeEE
Confidence 67999999999999999999883 22 3333333 2222222 2333333444444445679999
Q ss_pred EEcCCCCcc-------------h-------hhhhccCCCCCCcEEEE--Eecchhhhc------ccCceEEecCCCHHHH
Q 037045 84 FLDGVSSEI-------------N-------FKEIGMHDDHGRGKVVF--ACRSREFCW------QADGVIHVQQLCQREA 135 (424)
Q Consensus 84 vlD~~~~~~-------------~-------~~~~~~~~~~~~~~iii--ttr~~~~~~------~~~~~~~l~~l~~~~~ 135 (424)
+||+++-.- . ++.+..........+|| |+|...+.+ ..+..|.+.--++..-
T Consensus 287 FiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR 366 (802)
T KOG0733|consen 287 FIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAR 366 (802)
T ss_pred EeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHH
Confidence 999987530 1 22222222222223343 555544443 5667777777777777
Q ss_pred HHHHHHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVH-LKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.+++.....+. ....- ..++|++..-|+-
T Consensus 367 ~~IL~~~~~~lrl~g~~----d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 367 EEILRIICRGLRLSGDF----DFKQLAKLTPGFV 396 (802)
T ss_pred HHHHHHHHhhCCCCCCc----CHHHHHhcCCCcc
Confidence 77777666543 22222 2455777776653
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.82 E-value=0.0004 Score=69.02 Aligned_cols=149 Identities=14% Similarity=0.199 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.++|++|+|||++|+.++.... ..| +.++ ..++.... .+ .........+.......+++|
T Consensus 91 iLL~GppGtGKT~la~alA~~~~--~~~-----~~i~----~~~~~~~~---~g-----~~~~~l~~~f~~a~~~~p~Il 151 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSIS----GSDFVEMF---VG-----VGASRVRDLFEQAKKNAPCII 151 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCe-----eecc----HHHHHHHH---hc-----ccHHHHHHHHHHHHhcCCCEE
Confidence 67999999999999999998762 222 2221 11111111 00 111122223333334567999
Q ss_pred EEcCCCCcch----------------hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHH
Q 037045 84 FLDGVSSEIN----------------FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAK 136 (424)
Q Consensus 84 vlD~~~~~~~----------------~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~ 136 (424)
+||+++.... +..+ .+- ....+..||.||....... .-+..+++...+.++-.
T Consensus 152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~ 231 (495)
T TIGR01241 152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGRE 231 (495)
T ss_pred EEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHH
Confidence 9999865310 1111 000 1122334555554433222 34567889988999999
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHHhcCCch-HHHHHH
Q 037045 137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMP-YMLKLI 174 (424)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~ 174 (424)
++++......... .+.....+++.+.|+- ..|..+
T Consensus 232 ~il~~~l~~~~~~---~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 232 EILKVHAKNKKLA---PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHHHHhcCCCC---cchhHHHHHHhCCCCCHHHHHHH
Confidence 9998877543211 1223457888888743 444443
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00073 Score=68.40 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc---------------------CCCCceEEEEEeccCCCHHHHHHHHHHHhccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE---------------------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAK 61 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~---------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 61 (424)
.+.++|+.|+||||+|+.++....- ..+|+ +..++.....+.+++. .+..++....
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir-~li~~~~~~P- 117 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIR-NLIEQVRIPP- 117 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHH-HHHHHHhhCc-
Confidence 4678999999999999998887531 11233 2233332222222222 1212111000
Q ss_pred ccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHH
Q 037045 62 ELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQR 133 (424)
Q Consensus 62 ~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~ 133 (424)
+.+.+-++|||+++.... .+.+ . +-....++.+|+ |++...+.. .....+++.+++.+
T Consensus 118 --------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ 183 (614)
T PRK14971 118 --------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVA 183 (614)
T ss_pred --------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHH
Confidence 123455889999988743 3333 1 112223455554 444444443 77889999999999
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 134 EAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
+..+.+.+.+.... ....++.+..|++.++|....+.
T Consensus 184 ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 184 DIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 99999988776542 22334567889999999775443
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.0012 Score=66.20 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=60.8
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|+|+++.... ++.+ .+-.....+.+|++| ....+.. .....+++..++.++..+.+.+.+... .
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e--g 195 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED--Q 195 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc--C
Confidence 4566899999987743 3444 111222345555544 4333333 667789999999999999988877543 2
Q ss_pred CccHHHHHHHHHHhcCCchHHHHH
Q 037045 150 YPDIELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Plai~~ 173 (424)
....++.+..|++.++|.+..+..
T Consensus 196 i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 196 IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 233356778899999998854433
No 156
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=3.8e-05 Score=48.25 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045 358 KLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 358 ~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~ 392 (424)
+|+.|++++|+++.+|..+.++++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666665566666777777766643
No 157
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.79 E-value=0.00045 Score=66.31 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=75.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
++.|.|+-++||||+++.+..... +. ++++..-... +...+ .+.... +.+....++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l-~d~~~~----------------~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIEL-LDLLRA----------------YIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhH-HHHHHH----------------HHHhhccCCc
Confidence 789999999999999977777663 22 5555543321 21111 111111 1111112778
Q ss_pred EEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHHHHHHH
Q 037045 82 VLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~~~~l~ 139 (424)
.++||.|+...+|+.. .+.+.... ++++|+.+..... +....+++-||+..|-..+.
T Consensus 97 yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999999999888 33344444 8888887765555 67888899999998877653
No 158
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.4e-05 Score=48.49 Aligned_cols=39 Identities=33% Similarity=0.509 Sum_probs=26.2
Q ss_pred ccceeeecccccccccCChhhhccCCCCEEEecCCcCcccc
Q 037045 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP 373 (424)
Q Consensus 333 ~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp 373 (424)
+|++|++ +.+.+.++|..+++|++|+.|++++|+++++|
T Consensus 2 ~L~~L~l--~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDL--SNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEE--TSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEc--cCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 5667777 66677777766777777777777777777664
No 159
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0015 Score=66.25 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 76 (424)
-+.++|+.|+||||+|+.+++... +...+.... ..+..-..++.+........ .....++....+ +..
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~~~----~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii-~~a 113 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLN-CLNSDKPTP----EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELI-ERA 113 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhc-CCCcCCCCC----CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHH-HHH
Confidence 357899999999999999999874 211111000 11122233333332222111 111111221111 111
Q ss_pred -----ccCcEEEEEcCCCCcch--hhhh-cc-CCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 77 -----NDRSYVLFLDGVSSEIN--FKEI-GM-HDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 77 -----~~~~~LlvlD~~~~~~~--~~~~-~~-~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
.+++-++|||+++.... .+.+ .. -.....+.+|+ |+....+.. .....+++..++.++..+.+.+.+
T Consensus 114 ~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 114 QFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred hhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 23456899999997642 3333 11 11122344444 443333332 667888999999999888888777
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
.... .....+.+..|++.++|.+..+....
T Consensus 194 ~keg--i~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 194 EKES--IEIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5531 12224567889999999886554433
No 160
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.76 E-value=0.00013 Score=62.75 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-c---ccChhHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-K---ELNNDLRADIISKEL 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~---~~~~~~~~~~l~~~l 76 (424)
+||+++|+.|+||||.+.+++..... +-..+..++..... ...+-++..++.++.+. . ..+..+......+.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 68999999999999999999999853 34457778776543 45567778888888775 1 222333333223333
Q ss_pred ccCcE-EEEEcCCC
Q 037045 77 NDRSY-VLFLDGVS 89 (424)
Q Consensus 77 ~~~~~-LlvlD~~~ 89 (424)
+.+++ ++++|-..
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 34443 88888764
No 161
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=3.9e-06 Score=81.46 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=76.8
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~ 341 (424)
.+|+.|++++|.++.+..+..++.|+.|++++|.++.+.. +..+.+|+.+++++|.+..++.. ...+..++.+.+
T Consensus 118 ~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l-- 193 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDL-- 193 (414)
T ss_pred hcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhc--
Confidence 8999999999999999988888889999999999998777 55688999999999988666543 577888888888
Q ss_pred cccccccCChhhhccCCCCEEEecCCcCc
Q 037045 342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQ 370 (424)
Q Consensus 342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~ 370 (424)
..+.+..+.. +..+.++..+++..|.++
T Consensus 194 ~~n~i~~i~~-~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 194 GGNSIREIEG-LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cCCchhcccc-hHHHHHHHHhhcccccce
Confidence 6777665431 222223333344444444
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=8.1e-05 Score=71.04 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc--cC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN--DR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~--~~ 79 (424)
+-|.++|++|+|||++|+.+++.......++.+.||.+....+..+++.-..-. +...... .+...+.+.+... ++
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy~~~-~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGFRRK-DGIFYNFCQQAKEQPEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCeEec-CchHHHHHHHHHhcccC
Confidence 357889999999999999999988655677889999999887777665422100 0000000 0111122222222 36
Q ss_pred cEEEEEcCCCCc
Q 037045 80 SYVLFLDGVSSE 91 (424)
Q Consensus 80 ~~LlvlD~~~~~ 91 (424)
++++|||++...
T Consensus 273 ~~vliIDEINRa 284 (459)
T PRK11331 273 KYVFIIDEINRA 284 (459)
T ss_pred CcEEEEehhhcc
Confidence 899999999875
No 163
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.0019 Score=61.07 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC--
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR-- 79 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~-- 79 (424)
-+-|.|-+|+|||.+...++.+......--.++++++..-....+++..|...+-... ......+....+.+...+.
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred ceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccc
Confidence 3568899999999999999999842222234688888887788889999888873332 2222244455555555553
Q ss_pred cEEEEEcCCCCcc-----hhhhhccCCCCCCcEEEEEe---------cchhhhc----ccCceEEecCCCHHHHHHHHHH
Q 037045 80 SYVLFLDGVSSEI-----NFKEIGMHDDHGRGKVVFAC---------RSREFCW----QADGVIHVQQLCQREAKKLFWE 141 (424)
Q Consensus 80 ~~LlvlD~~~~~~-----~~~~~~~~~~~~~~~iiitt---------r~~~~~~----~~~~~~~l~~l~~~~~~~l~~~ 141 (424)
-+|+|+|+.+... .+-.+...+.-+++++|+.- |.-.... -....+...+.+.++-++++..
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~ 336 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQ 336 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHH
Confidence 5899999987542 11111111334455554322 2111111 3456778889999999999999
Q ss_pred Hhccc
Q 037045 142 VVGVH 146 (424)
Q Consensus 142 ~~~~~ 146 (424)
++...
T Consensus 337 rl~~~ 341 (529)
T KOG2227|consen 337 RLSEE 341 (529)
T ss_pred HHhcc
Confidence 88655
No 164
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.72 E-value=0.00029 Score=65.77 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=58.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEecc-CCCHHHHHHHHHHHhcccccccChhH------HHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINT-DGNIRDIQEIILERLKVNAKELNNDL------RADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~l~~ 74 (424)
-+.|+|++|+|||||++++++... .++.+. ++|+.++. ..++.++.+.+...+..+........ ....+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999874 233444 46766665 56888999999887765431111111 1112222
Q ss_pred Hh--ccCcEEEEEcCCCCc
Q 037045 75 EL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 75 ~l--~~~~~LlvlD~~~~~ 91 (424)
.+ ++++++||+|++...
T Consensus 214 ~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHcCCCEEEEEeCcHHH
Confidence 22 468999999998653
No 165
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00058 Score=67.54 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS 80 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 80 (424)
-|.|.|+.|+|||+||+.+++... +...-++.+++++.- ...+.+++.+.+ .+.+.+...+
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~~~P 495 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALWYAP 495 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHhhCC
Confidence 378999999999999999999996 555666777777663 234444433322 2334556678
Q ss_pred EEEEEcCCCCcc--------h----hhhh-ccC------CCCCCc--EEEEEecchhhhc-------ccCceEEecCCCH
Q 037045 81 YVLFLDGVSSEI--------N----FKEI-GMH------DDHGRG--KVVFACRSREFCW-------QADGVIHVQQLCQ 132 (424)
Q Consensus 81 ~LlvlD~~~~~~--------~----~~~~-~~~------~~~~~~--~iiittr~~~~~~-------~~~~~~~l~~l~~ 132 (424)
-++|+||++... + .+.+ .+. ....+. .+|.|.+...... ..+....+..+..
T Consensus 496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 899999987531 1 1111 000 122233 3444544433333 3455667778888
Q ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
++-.+++........ .....+...-+..+|+|+-
T Consensus 576 ~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~ 609 (952)
T KOG0735|consen 576 TRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYL 609 (952)
T ss_pred hHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCcc
Confidence 888787776665431 1222333444888888863
No 166
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=5.4e-06 Score=81.49 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=80.3
Q ss_pred hcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCC
Q 037045 305 FDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELK 383 (424)
Q Consensus 305 ~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~ 383 (424)
+.-++.++.|++++|++.+.. .+-.+++|..||+ +.|.+..+|. ....| +|+.|.+++|.++++ .++.++++|+
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDl--syN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDL--SYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhccccccccc--ccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhh
Confidence 555678888899998886553 6777888888998 8888888876 33343 488888988888888 4688999999
Q ss_pred EeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 384 YLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 384 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.|+++.|-+.+ -..+..|..|..|+.|+|.
T Consensus 258 ~LDlsyNll~~-----------hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 258 GLDLSYNLLSE-----------HSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred ccchhHhhhhc-----------chhhhHHHHHHHHHHHhhc
Confidence 99999986553 3677778888888888763
No 167
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=6.1e-05 Score=62.99 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=60.9
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC--hhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP--PSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p--~~~~~l~~L~~l~l~ 340 (424)
.+...+++.+|.+..++.+..++.|..|.+.+|.++.+.+..-..+++|..|.+.+|++..+- ..+-.++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl- 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL- 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee-
Confidence 345566777777777777777777777777777777766664444566777777777653221 22445556666666
Q ss_pred ccccccccCCh----hhhccCCCCEEEecC
Q 037045 341 SSCSLLLQLPA----EIGRLQKLEILDVSH 366 (424)
Q Consensus 341 ~~~~~~~~lp~----~~~~l~~L~~L~l~~ 366 (424)
-.+....... =+..+|+|++||...
T Consensus 121 -l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 -LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -cCCchhcccCceeEEEEecCcceEeehhh
Confidence 4555443321 134556666666543
No 168
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.70 E-value=0.00033 Score=62.07 Aligned_cols=88 Identities=15% Similarity=0.228 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhccc-------c---cccChhH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKVN-------A---KELNNDL 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~---~~~~~~~ 67 (424)
.++.|+|++|+|||+++.+++....... .-..++|++.....+...+.+ +.+..+.. - ...+.++
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNGEQ 98 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCHHH
Confidence 4789999999999999999988763111 115689999877666555443 33332211 0 2234455
Q ss_pred HHHHHHHHhc---c-CcEEEEEcCCCC
Q 037045 68 RADIISKELN---D-RSYVLFLDGVSS 90 (424)
Q Consensus 68 ~~~~l~~~l~---~-~~~LlvlD~~~~ 90 (424)
....+.+... . +.-++|+|.+..
T Consensus 99 ~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 99 QLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 5555554433 3 345899998754
No 169
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.69 E-value=0.0029 Score=59.83 Aligned_cols=177 Identities=12% Similarity=0.150 Sum_probs=112.1
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHhhccCCCCceEEEEEecc---CCCHHHHHHHHHHHhcccc------------------
Q 037045 3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDIIFWENINT---DGNIRDIQEIILERLKVNA------------------ 60 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~------------------ 60 (424)
+|.|+||-|+||+.|+ .++..+.+ . +..++|.+ ..+-..+++.++.++|.-+
T Consensus 19 FIvV~GPrGSGK~elV~d~~L~~r~--~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qG 92 (431)
T PF10443_consen 19 FIVVQGPRGSGKRELVMDHVLKDRK--N----VLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQG 92 (431)
T ss_pred EEEEECCCCCCccHHHHHHHHhCCC--C----EEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhh
Confidence 7899999999999999 77777652 2 77777655 2345566677777665432
Q ss_pred --------cccChhHHHHHH-------HH-------------------Hhc---cCcEEEEEcCCCCcch--------hh
Q 037045 61 --------KELNNDLRADII-------SK-------------------ELN---DRSYVLFLDGVSSEIN--------FK 95 (424)
Q Consensus 61 --------~~~~~~~~~~~l-------~~-------------------~l~---~~~~LlvlD~~~~~~~--------~~ 95 (424)
....+.+..+.+ ++ ++. .++=+|||||+....+ +.
T Consensus 93 ltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy~~la 172 (431)
T PF10443_consen 93 LTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFIYDKLA 172 (431)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchHHHHHH
Confidence 111111111111 11 011 1245899999865321 22
Q ss_pred hhc-cCCCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHHHHHHHHHHhcccCCC-----------------
Q 037045 96 EIG-MHDDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQREAKKLFWEVVGVHLKK----------------- 149 (424)
Q Consensus 96 ~~~-~~~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~----------------- 149 (424)
+++ ..-..+=.+||+.|.+..... .....+.+...+++.|.++....+......
T Consensus 173 eWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~ 252 (431)
T PF10443_consen 173 EWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSA 252 (431)
T ss_pred HHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 221 123444567888776644443 667788899999999999999888653110
Q ss_pred -CccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchH
Q 037045 150 -YPDIELVADSIVKECGGMPYMLKLIGKELANQSEVA 185 (424)
Q Consensus 150 -~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~ 185 (424)
...........++..||--.-++.+++.++...++.
T Consensus 253 ~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 253 ENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 012344566778889999999999999999985544
No 170
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.69 E-value=3e-05 Score=70.01 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=97.0
Q ss_pred cceeEEEeeccCCCC--CCCC----cCcccccEEEccCCCCCCCChHH-------------hcccCCCcEEEccCCCCCc
Q 037045 263 AHTKRLSLFGFPSST--LPDM----PNCCEILTLILEGKRLEKLPTSF-------------FDYMCHLQLLDLHETNIGC 323 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~~~----~~~~~L~~L~l~~~~l~~~~~~~-------------~~~~~~L~~L~l~~~~~~~ 323 (424)
++|+.|++|.|.+.. ++.+ .+|..|+.|.+.+|.+....... ...-+.|+++..++|++.+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 689999999998876 3332 77999999999999987433222 2345789999999999855
Q ss_pred CC-----hhhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeec
Q 037045 324 LP-----PSISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVS 388 (424)
Q Consensus 324 ~p-----~~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~ 388 (424)
.+ ..+...+.|+.+.+ ..+.+.. +...+..+++|+.|++..|-++. +-..+..++.|+.++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~--~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRL--SQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccHHHHHHHHHhccccceEEE--ecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 54 34566788999988 6666642 23567889999999999997663 33446788899999999
Q ss_pred cccC
Q 037045 389 RVEN 392 (424)
Q Consensus 389 ~n~~ 392 (424)
+|.+
T Consensus 250 dcll 253 (382)
T KOG1909|consen 250 DCLL 253 (382)
T ss_pred cccc
Confidence 9864
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0011 Score=66.87 Aligned_cols=95 Identities=8% Similarity=0.086 Sum_probs=60.0
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
++.-++|||+++.... .+.+ .+-.....+.+|+ ||....+.. +....+++..++.++..+.+...+....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-- 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-- 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--
Confidence 3456899999987642 3333 1112223455554 544444443 6678889999999999988887765441
Q ss_pred CccHHHHHHHHHHhcCCch-HHHHHH
Q 037045 150 YPDIELVADSIVKECGGMP-YMLKLI 174 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~P-lai~~~ 174 (424)
....++.+..|++.++|.. .++..+
T Consensus 196 i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233567788999999976 444444
No 172
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.00052 Score=71.45 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=70.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCC---CC-ceEEE-EEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-c
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESR---RF-DIIFW-ENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-N 77 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~f-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~ 77 (424)
+.++|++|+|||++|+.+++...... .+ +..+| ++++. +. .. ..-....++..+.+.+.+ +
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~------l~----a~---~~~~g~~e~~l~~i~~~~~~ 272 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS------LL----AG---TKYRGDFEERLKAVVSEIEK 272 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH------Hh----hh---ccccchHHHHHHHHHHHHhc
Confidence 57899999999999999999873221 11 33333 22111 11 00 000011122222223222 2
Q ss_pred cCcEEEEEcCCCCcc----------hhhhhccCCCCCCc-EEEEEecchhhh------c---ccCceEEecCCCHHHHHH
Q 037045 78 DRSYVLFLDGVSSEI----------NFKEIGMHDDHGRG-KVVFACRSREFC------W---QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~----------~~~~~~~~~~~~~~-~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~~ 137 (424)
.++++|++|+++... +...+..|.-..|. .+|-+|....+. + .....++++.++.++..+
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~ 352 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVK 352 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHH
Confidence 357899999987431 22233223222333 455555442221 1 456689999999999999
Q ss_pred HHHHHhc
Q 037045 138 LFWEVVG 144 (424)
Q Consensus 138 l~~~~~~ 144 (424)
+++....
T Consensus 353 il~~~~~ 359 (731)
T TIGR02639 353 ILKGLKE 359 (731)
T ss_pred HHHHHHH
Confidence 9986553
No 173
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.68 E-value=0.00015 Score=66.79 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++-|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++... .....++....+...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4788999999999999999988873 334558899877655543 344444332 333445556666555
Q ss_pred hcc-CcEEEEEcCCCC
Q 037045 76 LND-RSYVLFLDGVSS 90 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~ 90 (424)
.+. .--++|+|.+..
T Consensus 129 i~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAA 144 (321)
T ss_pred hhccCCcEEEEcchhh
Confidence 544 355899998753
No 174
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.67 E-value=8.5e-05 Score=63.45 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES 28 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 28 (424)
+.+.|+|++|+|||+|++++++.....
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999998644
No 175
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.65 E-value=0.00016 Score=66.64 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++-|+|++|+||||||.+++.... ..-..++|++.....++. .++.++... ...+.++....+...
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 4788999999999999999988773 334568899977665543 334444322 233455556666555
Q ss_pred hccC-cEEEEEcCCC
Q 037045 76 LNDR-SYVLFLDGVS 89 (424)
Q Consensus 76 l~~~-~~LlvlD~~~ 89 (424)
.+.. --++|+|.+.
T Consensus 129 i~s~~~~lIVIDSva 143 (325)
T cd00983 129 VRSGAVDLIVVDSVA 143 (325)
T ss_pred HhccCCCEEEEcchH
Confidence 5544 4589999864
No 176
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.65 E-value=0.00027 Score=58.85 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN 44 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 44 (424)
++.|+|++|+||||++..++.... ..-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 478999999999999999999883 3445588888765533
No 177
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.64 E-value=0.00028 Score=63.49 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC---CC-CceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES---RR-FDIIFWENINTDGNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~ 57 (424)
.++=|+|++|+|||+|+.+++-..... .. -..++|++....++.+.+.+ |++..+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~ 97 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFG 97 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccc
Confidence 367799999999999999988665321 22 24599999888888887764 555443
No 178
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.62 E-value=0.00032 Score=61.27 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQE 50 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 50 (424)
+++.|+|++|+|||+++.+++.... .....++|++... .++..+.+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH
Confidence 4789999999999999999998773 3456799999875 56655554
No 179
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=2.3e-05 Score=79.96 Aligned_cols=128 Identities=24% Similarity=0.273 Sum_probs=96.0
Q ss_pred ccceeEEEeeccCCCC--CCC--CcCcccccEEEccCCCCCC-CChHHhcccCCCcEEEccCCCCCcCChhhhcccccce
Q 037045 262 DAHTKRLSLFGFPSST--LPD--MPNCCEILTLILEGKRLEK-LPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNA 336 (424)
Q Consensus 262 ~~~l~~L~l~~~~~~~--~~~--~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~ 336 (424)
+.+|++|+++|...-. +|. ...+|+|+.|.+.+-.+.. ........+|+|+.||++++++..+ ..++.|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3899999998844332 221 1679999999999887763 2334467799999999999999888 66899999999
Q ss_pred eeecccccccccCC--hhhhccCCCCEEEecCCcCcccchh-------hhcCCCCCEeeeccccC
Q 037045 337 LFLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPSE-------IGQLIELKYLRVSRVEN 392 (424)
Q Consensus 337 l~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~~-------i~~l~~L~~l~l~~n~~ 392 (424)
|.+ .+-...... ..+..|++|++||+|..+...-+.. -..+|+||.|+.|+..+
T Consensus 200 L~m--rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSM--RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred Hhc--cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 988 565555443 3677899999999998874433321 13688999999998754
No 180
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.61 E-value=0.00034 Score=62.35 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEEEEeccCCCHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFWENINTDGNIRDIQE 50 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~ 50 (424)
+++.|+|++|+|||+++.+++........ ...++|++....++.+.+.+
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 47899999999999999999866422221 35799999877666555443
No 181
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0015 Score=59.79 Aligned_cols=137 Identities=15% Similarity=0.257 Sum_probs=80.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh---c-cC
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL---N-DR 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l---~-~~ 79 (424)
|.+||++|+|||-||+.|+++. ...| +.+... .+.++ .+| +....+++.+ + ..
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T--~AtF-----IrvvgS----ElVqK---YiG---------EGaRlVRelF~lAreka 244 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQT--DATF-----IRVVGS----ELVQK---YIG---------EGARLVRELFELAREKA 244 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhcc--CceE-----EEeccH----HHHHH---Hhc---------cchHHHHHHHHHHhhcC
Confidence 6799999999999999999987 4433 333322 11111 111 1223333333 3 35
Q ss_pred cEEEEEcCCCCc--------------------chhhhh-ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045 80 SYVLFLDGVSSE--------------------INFKEI-GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC 131 (424)
Q Consensus 80 ~~LlvlD~~~~~--------------------~~~~~~-~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~ 131 (424)
+++|.+|.++.. +-+.++ +|- ....-|||..|...+... .-+..+++..=+
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD-~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd 323 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD-PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-CCCCeEEEEecCCccccChhhcCCCcccceeecCCCC
Confidence 899999998752 113333 332 345568887776544443 677888888555
Q ss_pred HHHHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045 132 QREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.+.-.++|+-+..+- ....-+ ...+++.|.|.-
T Consensus 324 ~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 324 EEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred HHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 566667777666543 112222 455777777764
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.60 E-value=0.00019 Score=61.62 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe----ccC-----CCHHH----HHHHHHHHhcccccccChhHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI----NTD-----GNIRD----IQEIILERLKVNAKELNNDLR 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~-----~~~~~----~~~~i~~~l~~~~~~~~~~~~ 68 (424)
.++.+.|++|+|||.||...+-+.-....++.++++.- +.. -+.++ ....+...+..-. ..+..
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~---~~~~~ 96 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF---GKEKL 96 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS----TTCH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh---ChHhH
Confidence 57899999999999999998877655688888888741 111 11111 1111221211110 11111
Q ss_pred HHHH---------HHHhccC---cEEEEEcCCCCcc--hhhhhccCCCCCCcEEEEEecch
Q 037045 69 ADII---------SKELNDR---SYVLFLDGVSSEI--NFKEIGMHDDHGRGKVVFACRSR 115 (424)
Q Consensus 69 ~~~l---------~~~l~~~---~~LlvlD~~~~~~--~~~~~~~~~~~~~~~iiittr~~ 115 (424)
...+ ..+++++ +.++|+|++++.. ++..+ +...+.+||+|++--..
T Consensus 97 ~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i-lTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI-LTRIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH-HTTB-TT-EEEEEE---
T ss_pred HHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH-HcccCCCcEEEEecCce
Confidence 1111 1234453 6799999999874 45554 45678899999886544
No 183
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0029 Score=63.57 Aligned_cols=159 Identities=11% Similarity=0.070 Sum_probs=86.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---c---ccChhHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---K---ELNNDLRADIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~---~~~~~~~~~~l~~~l 76 (424)
.+.++|+.|+||||+|+.+++...-....+ +.+++.-...+.+........ + ....++. ..+....
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~i-r~i~~~v 111 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSLMDVIEIDAASNNGVDEI-RDIRDKV 111 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHH-HHHHHHH
Confidence 456799999999999999988763111100 011111122222222111111 0 0111111 1111211
Q ss_pred -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045 77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
.++.-++|||+++... .+..+ .+-.....+.+|+ ||....+.. +....+++..++.++..+.+...+
T Consensus 112 ~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 112 KYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred hhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHH
Confidence 2456689999998763 23333 1111122344444 444443333 567788999999999999988877
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai 171 (424)
.... ....++.+..|++.++|.+..+
T Consensus 192 ~~eg--i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 192 DKEG--IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 5442 1223456788999999987543
No 184
>PRK09354 recA recombinase A; Provisional
Probab=97.58 E-value=0.00025 Score=65.94 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++-|+|++|+|||||+.+++.... ..-..++|++.-...++. .++.++... ...+.++....+...
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4788999999999999999998873 344568999987776653 344444332 233455555666555
Q ss_pred hccC-cEEEEEcCCCC
Q 037045 76 LNDR-SYVLFLDGVSS 90 (424)
Q Consensus 76 l~~~-~~LlvlD~~~~ 90 (424)
.+.. --++|+|.+..
T Consensus 134 i~s~~~~lIVIDSvaa 149 (349)
T PRK09354 134 VRSGAVDLIVVDSVAA 149 (349)
T ss_pred hhcCCCCEEEEeChhh
Confidence 5543 45899998753
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.57 E-value=0.00058 Score=60.41 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=60.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE--e--cc-----CCCHHHHHHHHHHHhcccc-cccChhHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN--I--NT-----DGNIRDIQEIILERLKVNA-KELNNDLRADI 71 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~--~--~~-----~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~ 71 (424)
.+|.+.|++|+|||+||..++.+.-....|+.++-.. + +. +-+.++...-.+.-+...- .....+.....
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~ 154 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYC 154 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 4789999999999999999998643234455444432 1 11 1122222221111111000 00000010101
Q ss_pred -----------HHHHhccC---cEEEEEcCCCCcch--hhhhccCCCCCCcEEEEEecchh
Q 037045 72 -----------ISKELNDR---SYVLFLDGVSSEIN--FKEIGMHDDHGRGKVVFACRSRE 116 (424)
Q Consensus 72 -----------l~~~l~~~---~~LlvlD~~~~~~~--~~~~~~~~~~~~~~iiittr~~~ 116 (424)
--.+++++ .-++|+|+++.... +..+ +...+.++++|++--...
T Consensus 155 ~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~-ltR~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 155 LRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF-LTRLGENVTVIVNGDITQ 214 (262)
T ss_pred HHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHH-HhhcCCCCEEEEeCChhh
Confidence 12245665 45999999998753 2222 346778999998765543
No 186
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.56 E-value=0.00032 Score=62.11 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDI 48 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 48 (424)
+++.|+|++|+|||++|.+++.... .....++|++.. ..+.+.+
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence 4789999999999999999998773 334678999987 5555444
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3.8e-05 Score=78.34 Aligned_cols=131 Identities=20% Similarity=0.182 Sum_probs=76.0
Q ss_pred ccccEEEccCCCCC--CCChHHhcccCCCcEEEccCCCC--CcCChhhhcccccceeeecccccccccCChhhhccCCCC
Q 037045 285 CEILTLILEGKRLE--KLPTSFFDYMCHLQLLDLHETNI--GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLE 360 (424)
Q Consensus 285 ~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~--~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~ 360 (424)
.+|+.|++++...- +.+......+|+|+.|.+.+-.+ +++-.-...+++|..||+ +++.+..+ ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI--S~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI--SGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec--CCCCccCc-HHHhccccHH
Confidence 45777777764432 34444444567777777777655 333344556777777777 66666666 5677777777
Q ss_pred EEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 361 ILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 361 ~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.|.+.+-.+..-+ ..+.++++|+.|++|........ .-....++--..|++||.||+|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch------HHHHHHHHhcccCccccEEecC
Confidence 7776655544322 23567777777777775432110 0011122223447777777765
No 188
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00025 Score=63.09 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||+||..+++... ...-.++++++. ++...+-...... .... .+.+.+ .+--|
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~---~~~~----~~l~~l-~~~dL 166 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNG---QSGE----KFLQEL-CKVDL 166 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhcc---chHH----HHHHHh-cCCCE
Confidence 478999999999999999999984 333345665543 4444443332211 1111 122222 34559
Q ss_pred EEEcCCCCc--chhhhh-ccC----CCCCCcEEEEEecch
Q 037045 83 LFLDGVSSE--INFKEI-GMH----DDHGRGKVVFACRSR 115 (424)
Q Consensus 83 lvlD~~~~~--~~~~~~-~~~----~~~~~~~iiittr~~ 115 (424)
|||||+... ..|+.- .+. ...+...+||||...
T Consensus 167 LiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 167 LVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999433 333322 111 223334567777543
No 189
>PRK08181 transposase; Validated
Probab=97.55 E-value=0.00016 Score=65.13 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=53.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||.||..+++... .....++|+. ..+++..+..... ...... .+ +.+ .+-=|
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~----~~~~~~---~l-~~l-~~~dL 170 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR----ELQLES---AI-AKL-DKFDL 170 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh----CCcHHH---HH-HHH-hcCCE
Confidence 378999999999999999998873 3333456654 3445555533211 111111 12 222 13349
Q ss_pred EEEcCCCCcc--hh-hhhccC---CCCCCcEEEEEecchh
Q 037045 83 LFLDGVSSEI--NF-KEIGMH---DDHGRGKVVFACRSRE 116 (424)
Q Consensus 83 lvlD~~~~~~--~~-~~~~~~---~~~~~~~iiittr~~~ 116 (424)
|||||+.... .+ ....+. ....+..+||||+...
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 9999986431 11 111111 1112346888887654
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.55 E-value=0.0016 Score=68.05 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=79.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.++|++|+|||++|+.+++.. ...| +.+... +++... ...........+...-....++|
T Consensus 490 iLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~--------~l~~~~----vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP--------EILSKW----VGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH--------HHhhcc----cCcHHHHHHHHHHHHHhcCCEEE
Confidence 6889999999999999999987 3333 222211 111110 01111111222222223467999
Q ss_pred EEcCCCCcc--------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045 84 FLDGVSSEI--------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 84 vlD~~~~~~--------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l 138 (424)
+||+++... ...++ .+. ....+.-||.||....... .-+..+.+...+.++-.++
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 999987531 11212 011 1222334555554433322 3567788888899999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcCCch-HHHHHH
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECGGMP-YMLKLI 174 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~ 174 (424)
|+.......... ......+++.+.|+- ..|..+
T Consensus 631 ~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 631 FKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred HHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHH
Confidence 877664431111 112456778887764 334433
No 191
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00028 Score=66.71 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=73.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCC-CCCcCChhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHET-NIGCLPPSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~l~~L~~l~l~ 340 (424)
.++++|++++|.++.+|.+ -++|+.|.+++ +.++.+|.. + .++|++|++++| .+..+|.. |+.|.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L- 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI- 119 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe-
Confidence 6788999999988888732 23699999986 555566643 2 257889999888 56667654 344444
Q ss_pred cccc---ccccCChhhhcc------------------CCCCEEEecCCcCcccchhhhcCCCCCEeeeccc
Q 037045 341 SSCS---LLLQLPAEIGRL------------------QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRV 390 (424)
Q Consensus 341 ~~~~---~~~~lp~~~~~l------------------~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n 390 (424)
.++ .+..+|+++..| .+|+.|++++|....+|..+. .+|+.|.++.|
T Consensus 120 -~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 -KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred -CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 222 345666555433 267778887777555554333 36777777654
No 192
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.52 E-value=0.0011 Score=62.19 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGN 44 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~ 44 (424)
+|+|.|..|+||||+.+++.+..+.... --.++|++.....+
T Consensus 22 ~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~ 64 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDG 64 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCC
Confidence 7999999999999999999999953311 22355555444433
No 193
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0019 Score=62.95 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=72.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----ccC
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----NDR 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~ 79 (424)
|.+||++|+|||-||+.|++.. ..+| +.+..+ ++++..- ++-...+++.+ ...
T Consensus 548 vLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP--------ELlNkYV--------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP--------ELLNKYV--------GESERAVRQVFQRARASA 604 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH--------HHHHHHh--------hhHHHHHHHHHHHhhcCC
Confidence 6789999999999999999988 4444 444443 2222211 11122223322 246
Q ss_pred cEEEEEcCCCCc-------------chhhhh----ccCCCCCCcEEEEEecchhh-hc------ccCceEEecCCCHHHH
Q 037045 80 SYVLFLDGVSSE-------------INFKEI----GMHDDHGRGKVVFACRSREF-CW------QADGVIHVQQLCQREA 135 (424)
Q Consensus 80 ~~LlvlD~~~~~-------------~~~~~~----~~~~~~~~~~iiittr~~~~-~~------~~~~~~~l~~l~~~~~ 135 (424)
+|+|.||.++.. ..+.++ .-.....|--||-.|...++ -+ .-+..+.++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999999763 113333 11133445556655543333 22 6677778888888999
Q ss_pred HHHHHHHhc
Q 037045 136 KKLFWEVVG 144 (424)
Q Consensus 136 ~~l~~~~~~ 144 (424)
.++++....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999988876
No 194
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00037 Score=65.87 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=70.4
Q ss_pred cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCCcCChhhhcccccceeeecccccccccCChhhhccCCCC
Q 037045 282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLE 360 (424)
Q Consensus 282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~ 360 (424)
..|.+++.|++++|.++.+|. + -.+|+.|.+++| .+..+|..+ ..+|++|++. .|..+..+|.. |.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls-~Cs~L~sLP~s------Le 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVC-HCPEISGLPES------VR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEcc-Ccccccccccc------cc
Confidence 457889999999999998883 2 246999999986 457777655 4689999994 55477777754 55
Q ss_pred EEEecCCc---CcccchhhhcC------------------CCCCEeeeccccC
Q 037045 361 ILDVSHTK---VQCLPSEIGQL------------------IELKYLRVSRVEN 392 (424)
Q Consensus 361 ~L~l~~~~---i~~lp~~i~~l------------------~~L~~l~l~~n~~ 392 (424)
.|++.++. +..+|+++..| ++|++|.+++|..
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 55565543 45677665444 3688899888764
No 195
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.50 E-value=0.0036 Score=58.13 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=79.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-----CCHHHHHHHHHHHhcccccccChhHHHHHHHHH-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-----GNIRDIQEIILERLKVNAKELNNDLRADIISKE- 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~- 75 (424)
+.++|||++|+|||.+|+.+++... -.| +-++.+.- -+.+..+++++..- .+.
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg--~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A----------------~~~a 207 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMG--IEP---IVMSAGELESENAGEPGKLIRQRYREA----------------ADII 207 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcC--CCe---EEEEHHHhhcCcCCcHHHHHHHHHHHH----------------HHHh
Confidence 5789999999999999999999983 332 33332221 13344444443321 111
Q ss_pred -hccCcEEEEEcCCCCcc--------h------hhhh----c------cC------CCCCCcEEEEEecchhhhc-----
Q 037045 76 -LNDRSYVLFLDGVSSEI--------N------FKEI----G------MH------DDHGRGKVVFACRSREFCW----- 119 (424)
Q Consensus 76 -l~~~~~LlvlD~~~~~~--------~------~~~~----~------~~------~~~~~~~iiittr~~~~~~----- 119 (424)
-+++.++|+||+++... . ...+ . ++ ....+-.||.||.......
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 13578999999987421 0 0122 0 00 1233456777776544333
Q ss_pred --ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045 120 --QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYM 170 (424)
Q Consensus 120 --~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pla 170 (424)
..+..+ ..-+.++-.++++....... .. .....+|++...|-|+.
T Consensus 288 pGRfDk~i--~lPd~e~R~eIL~~~~r~~~-l~---~~dv~~Lv~~f~gq~~D 334 (413)
T PLN00020 288 DGRMEKFY--WAPTREDRIGVVHGIFRDDG-VS---REDVVKLVDTFPGQPLD 334 (413)
T ss_pred CCCCCcee--CCCCHHHHHHHHHHHhccCC-CC---HHHHHHHHHcCCCCCch
Confidence 223333 33466777777776665432 11 24556688888887753
No 196
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.47 E-value=9.9e-05 Score=58.27 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 197
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=4.1e-05 Score=67.72 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.9
Q ss_pred CCCCCCCCcChhhhhccccCceeecC
Q 037045 399 ADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 399 ~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+.+.+.+|.++-++..+++|..|.++
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred cccccccHHHHHHHcCCchhheeecc
Confidence 56677899999999999999988764
No 198
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0019 Score=64.60 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=77.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH-HhcccccccChhHHHHHHHHHhccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE-RLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
|.+||++|+|||-+|+.|+.... .-|+++..+ ++++ .+|. +++...+.+.+.-..++|+
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP--------ELLNMYVGq-----SE~NVR~VFerAR~A~PCV 767 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP--------ELLNMYVGQ-----SEENVREVFERARSAAPCV 767 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--------HHHHHHhcc-----hHHHHHHHHHHhhccCCeE
Confidence 67899999999999999999883 455666555 2222 2221 2222333333333457999
Q ss_pred EEEcCCCCc-------------------chhhhh-ccCCCCCCcEEEE--Eecchhhhc------ccCceEEecCCCHHH
Q 037045 83 LFLDGVSSE-------------------INFKEI-GMHDDHGRGKVVF--ACRSREFCW------QADGVIHVQQLCQRE 134 (424)
Q Consensus 83 lvlD~~~~~-------------------~~~~~~-~~~~~~~~~~iii--ttr~~~~~~------~~~~~~~l~~l~~~~ 134 (424)
|.||++++. +-+.++ ++.......-.|| |.|..-.-+ ..++-+.++.=+.++
T Consensus 768 IFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 768 IFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred EEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Confidence 999999874 124444 4443333333333 334322222 566777788766666
Q ss_pred HHHHHHHHhccc--CCCCccHHHHHHHHHHhcCC
Q 037045 135 AKKLFWEVVGVH--LKKYPDIELVADSIVKECGG 166 (424)
Q Consensus 135 ~~~l~~~~~~~~--~~~~~~~~~~~~~I~~~~~g 166 (424)
...-..+...+. -++.- ...+|++.|.-
T Consensus 848 sk~~vL~AlTrkFkLdedV----dL~eiAk~cp~ 877 (953)
T KOG0736|consen 848 SKLRVLEALTRKFKLDEDV----DLVEIAKKCPP 877 (953)
T ss_pred HHHHHHHHHHHHccCCCCc----CHHHHHhhCCc
Confidence 554444433222 11222 24567777754
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=97.47 E-value=0.0033 Score=65.29 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=92.0
Q ss_pred CCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEEEEcC
Q 037045 9 PLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDG 87 (424)
Q Consensus 9 ~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlvlD~ 87 (424)
|.++||||+|..++++.-- +.+ ..++-++.+...+.+.+. ++...+...... -..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~-------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKPI-------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc-------------CCCCCEEEEEEC
Confidence 7889999999999998632 222 236677777655555443 332222111000 012457999999
Q ss_pred CCCcc--hhhhh-ccC-CCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHH
Q 037045 88 VSSEI--NFKEI-GMH-DDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADS 159 (424)
Q Consensus 88 ~~~~~--~~~~~-~~~-~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (424)
++... ..+.+ .+. .....+++|++|.+..... +....+.+.+++.++..+.+.+.+.... ....++....
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i~i~~e~L~~ 716 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQA 716 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHH
Confidence 99875 33333 111 2235666666665543332 7788999999999999988887765431 1122557889
Q ss_pred HHHhcCCchHHH
Q 037045 160 IVKECGGMPYML 171 (424)
Q Consensus 160 I~~~~~g~Plai 171 (424)
|++.++|.+...
T Consensus 717 Ia~~s~GDlR~A 728 (846)
T PRK04132 717 ILYIAEGDMRRA 728 (846)
T ss_pred HHHHcCCCHHHH
Confidence 999999988443
No 200
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00011 Score=65.78 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=41.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||+||..++..... ..+ .+.|+ +..++...+..... . +.....+.+ + .+.-+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~~----~---~~~~~~l~~-l-~~~dl 162 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAHH----A---GRLQAELVK-L-GRYPL 162 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHHh----c---CcHHHHHHH-h-ccCCE
Confidence 4789999999999999999987742 222 23442 33445544433211 1 111222222 2 23358
Q ss_pred EEEcCCCCc
Q 037045 83 LFLDGVSSE 91 (424)
Q Consensus 83 lvlD~~~~~ 91 (424)
|||||+...
T Consensus 163 LIIDD~g~~ 171 (254)
T PRK06526 163 LIVDEVGYI 171 (254)
T ss_pred EEEcccccC
Confidence 999999753
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.46 E-value=0.0015 Score=56.05 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~ 80 (424)
+=+.|.||+|+||||-+..+++..--..+-+++.-.+.+.....+-+..+|-..-. -+-.+ .++.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ--------------~kv~lp~grh 114 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQ--------------KKVTLPPGRH 114 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHH--------------hhccCCCCce
Confidence 44789999999999999999998853334466666666665555444433321100 00011 2456
Q ss_pred EEEEEcCCCCcc
Q 037045 81 YVLFLDGVSSEI 92 (424)
Q Consensus 81 ~LlvlD~~~~~~ 92 (424)
-++|+|+++++-
T Consensus 115 KIiILDEADSMT 126 (333)
T KOG0991|consen 115 KIIILDEADSMT 126 (333)
T ss_pred eEEEeeccchhh
Confidence 689999999863
No 202
>PRK06921 hypothetical protein; Provisional
Probab=97.45 E-value=0.00069 Score=61.29 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEe
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENI 39 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~ 39 (424)
-+.++|+.|+|||.||..+++... .. ...++|+..
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 478999999999999999999874 33 344667664
No 203
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.45 E-value=0.009 Score=52.78 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=105.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcc----CCCCceEEEEEeccC---------------------CCHHHHHHHHHHHhcc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGE----SRRFDIIFWENINTD---------------------GNIRDIQEIILERLKV 58 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~---------------------~~~~~~~~~i~~~l~~ 58 (424)
..++|++|.||-|.+-.+.+...- +-+-+..-|.+-+.. ....-+.++++.++..
T Consensus 37 ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQ 116 (351)
T KOG2035|consen 37 LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQ 116 (351)
T ss_pred EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHh
Confidence 568999999999988777776532 111222333321111 1223355555555543
Q ss_pred cccccChhHHHHHHHHHhccCcE-EEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecc--hhhhc--ccCceEEecC
Q 037045 59 NAKELNNDLRADIISKELNDRSY-VLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRS--REFCW--QADGVIHVQQ 129 (424)
Q Consensus 59 ~~~~~~~~~~~~~l~~~l~~~~~-LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~--~~~~~--~~~~~~~l~~ 129 (424)
...... ..++.+ ++|+-.+++.. ....+ .+-...+.|++|+...+ +...+ +..-.+++..
T Consensus 117 t~qie~-----------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpa 185 (351)
T KOG2035|consen 117 TQQIET-----------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPA 185 (351)
T ss_pred hcchhh-----------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCC
Confidence 321111 112344 77777777652 11122 12245667888875443 33333 7777889999
Q ss_pred CCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC----------cchHHHHHHHHHhhh
Q 037045 130 LCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ----------SEVAIWRATADELRL 196 (424)
Q Consensus 130 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~----------~~~~~~~~~~~~l~~ 196 (424)
.+++|....+.+...++.-.-+ .+.+++|++.++|+-.---.+...++-+ ...-+|+-.+.+...
T Consensus 186 ps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 186 PSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 9999999999999887632333 7789999999999864333333332211 234568887777666
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0063 Score=56.35 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCcchh--hhh-c-cCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 79 RSYVLFLDGVSSEINF--KEI-G-MHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~~--~~~-~-~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
++-++|||+++.+..- ..+ . +-.-..++.+|++|.. ..+.+ +....+.+...+.+++.+.+... +. .
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---~- 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---S- 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC---C-
Confidence 4569999999987432 222 1 1122235666666654 44443 77888999999999998888653 11 1
Q ss_pred ccHHHHHHHHHHhcCCchHHHH
Q 037045 151 PDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai~ 172 (424)
+..+..++..++|.|....
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHH
Confidence 2346678999999997543
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0064 Score=56.41 Aligned_cols=151 Identities=7% Similarity=0.035 Sum_probs=82.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc--------cccChhHHHHHHHHH
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA--------KELNNDLRADIISKE 75 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~l~~~ 75 (424)
+.++|+.|+||+++|..+++..-=..... ...+..-...+.+...-.... .....++.. .+.+.
T Consensus 27 ~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR-~l~~~ 98 (325)
T PRK06871 27 LLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVR-EINEK 98 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHH-HHHHH
Confidence 56899999999999999998763111110 001111111222211100000 011122222 22222
Q ss_pred h-----ccCcEEEEEcCCCCcchhhhhcc----CCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045 76 L-----NDRSYVLFLDGVSSEINFKEIGM----HDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEV 142 (424)
Q Consensus 76 l-----~~~~~LlvlD~~~~~~~~~~~~~----~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~ 142 (424)
+ .+++-++|+|+++.+..-..-++ -.--.++.+|++|.+ ..+.+ +....+.+.++++++..+.+...
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 2 23556889999998753222211 122334455555554 44443 66889999999999999888776
Q ss_pred hcccCCCCccHHHHHHHHHHhcCCchH
Q 037045 143 VGVHLKKYPDIELVADSIVKECGGMPY 169 (424)
Q Consensus 143 ~~~~~~~~~~~~~~~~~I~~~~~g~Pl 169 (424)
.... ...+...++.++|.|.
T Consensus 179 ~~~~-------~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 179 SSAE-------ISEILTALRINYGRPL 198 (325)
T ss_pred hccC-------hHHHHHHHHHcCCCHH
Confidence 4221 1235567888999995
No 206
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.41 E-value=0.0061 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.744 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+.+||..|+|||++++.+.+.+.
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999884
No 207
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.41 E-value=0.0011 Score=69.82 Aligned_cols=127 Identities=19% Similarity=0.149 Sum_probs=68.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCC---CC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-cc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESR---RF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-ND 78 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~ 78 (424)
+.++|++|+|||++|+.+++...... .. +..+|.- +...++ ....-....++..+.+.+.+ ..
T Consensus 203 ~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~-------ag~~~~ge~e~rl~~i~~~~~~~ 270 (821)
T CHL00095 203 PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL-------AGTKYRGEFEERLKRIFDEIQEN 270 (821)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh-------ccCCCccHHHHHHHHHHHHHHhc
Confidence 57999999999999999999874211 11 2344421 111111 11110111222233232222 34
Q ss_pred CcEEEEEcCCCCcc---------hhhhhccCCCCCC-cEEEEEecchhhh----c-----ccCceEEecCCCHHHHHHHH
Q 037045 79 RSYVLFLDGVSSEI---------NFKEIGMHDDHGR-GKVVFACRSREFC----W-----QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 79 ~~~LlvlD~~~~~~---------~~~~~~~~~~~~~-~~iiittr~~~~~----~-----~~~~~~~l~~l~~~~~~~l~ 139 (424)
++++|+||+++... +...+..|.-..| -++|-+|....+. . .....+.++..+.++...++
T Consensus 271 ~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aIL 350 (821)
T CHL00095 271 NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEIL 350 (821)
T ss_pred CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHH
Confidence 68999999986431 2233322322222 3556555544321 1 55667889999999988888
Q ss_pred HHH
Q 037045 140 WEV 142 (424)
Q Consensus 140 ~~~ 142 (424)
...
T Consensus 351 r~l 353 (821)
T CHL00095 351 FGL 353 (821)
T ss_pred HHH
Confidence 654
No 208
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0014 Score=61.91 Aligned_cols=160 Identities=14% Similarity=0.220 Sum_probs=87.6
Q ss_pred EEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEEE
Q 037045 5 CIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLF 84 (424)
Q Consensus 5 ~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Llv 84 (424)
.++||+|+||||++..+++.. .|+. .=+.++...+..+ +++++... ..+-+||
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L----~ydI-ydLeLt~v~~n~d-Lr~LL~~t---------------------~~kSIiv 291 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYL----NYDI-YDLELTEVKLDSD-LRHLLLAT---------------------PNKSILL 291 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhc----CCce-EEeeeccccCcHH-HHHHHHhC---------------------CCCcEEE
Confidence 589999999999999999977 3442 2233433333333 44444432 2345667
Q ss_pred EcCCCCcch--------------------hhhh-ccC-CCCC---CcEEE-EEecchhhhc-------ccCceEEecCCC
Q 037045 85 LDGVSSEIN--------------------FKEI-GMH-DDHG---RGKVV-FACRSREFCW-------QADGVIHVQQLC 131 (424)
Q Consensus 85 lD~~~~~~~--------------------~~~~-~~~-~~~~---~~~ii-ittr~~~~~~-------~~~~~~~l~~l~ 131 (424)
|.|++...+ +.-+ .+. .-++ +-+|| .||...+... ..+..++|.--+
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCt 371 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCT 371 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCC
Confidence 777664311 1111 000 1111 22555 5776655443 667778899999
Q ss_pred HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH-hCCcc-hHHHHHHHHHhhh
Q 037045 132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL-ANQSE-VAIWRATADELRL 196 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l-~~~~~-~~~~~~~~~~l~~ 196 (424)
.+....|+.++++.+. +.+ .+.+|.+...+.-+.=..+|..+ ..+.+ ....+.+.+.+..
T Consensus 372 f~~fK~La~nYL~~~~-~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 372 FEAFKTLASNYLGIEE-DHR----LFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred HHHHHHHHHHhcCCCC-Ccc----hhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 9999999999987642 233 44445444455433334444443 33322 2333444444444
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.39 E-value=0.0041 Score=61.73 Aligned_cols=172 Identities=17% Similarity=0.114 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc------CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 75 (424)
+.+-|.|.+|+|||..+..|.+.... ...|+ -+.|+.-.-.++.++...|+.++..... ........+...
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~--~~~~al~~L~~~ 499 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERV--TWDAALEALNFR 499 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcc--cHHHHHHHHHHh
Confidence 36789999999999999999997642 22333 3455555567899999999999987651 122233344444
Q ss_pred hc-----cCcEEEEEcCCCCcc-----hhhhhccCCCCCCcEEEEEe-cchhhhc-----------ccCceEEecCCCHH
Q 037045 76 LN-----DRSYVLFLDGVSSEI-----NFKEIGMHDDHGRGKVVFAC-RSREFCW-----------QADGVIHVQQLCQR 133 (424)
Q Consensus 76 l~-----~~~~LlvlD~~~~~~-----~~~~~~~~~~~~~~~iiitt-r~~~~~~-----------~~~~~~~l~~l~~~ 133 (424)
+. .+.+++++|+++... .+-.+.-.+...++|++|.+ -+-...+ -+...+.+.+.+.+
T Consensus 500 f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~ 579 (767)
T KOG1514|consen 500 FTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHE 579 (767)
T ss_pred hccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHH
Confidence 32 357999999987642 23333112456677766543 2111111 45567777888888
Q ss_pred HHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045 134 EAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 134 ~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
+-.++...++... .-.....+-++++|+.-.|..-.|+.++-.
T Consensus 580 qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 580 QLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred HHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 8888777766543 112233344455555555555555554443
No 210
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0038 Score=58.53 Aligned_cols=65 Identities=8% Similarity=0.081 Sum_probs=42.0
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEV 142 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~ 142 (424)
+.+-++|||+++.... .+.+ .+-....++.+|++|.+.. +.+ +....+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4556899999987643 2222 1112234556666665433 333 88889999999999998888653
No 211
>PRK04296 thymidine kinase; Provisional
Probab=97.38 E-value=0.00024 Score=60.98 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccccc---ccChhHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAK---ELNNDLRADIISKELND 78 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~ 78 (424)
.++.|+|+.|.||||++..++.+.. .+...++.+. ...+.......++.+++.... .....+....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 3678899999999999999999884 3333444442 111212223344555543221 2223344444444 222
Q ss_pred CcEEEEEcCCCCc--chhhhhccCCCCCCcEEEEEecchhhh
Q 037045 79 RSYVLFLDGVSSE--INFKEIGMHDDHGRGKVVFACRSREFC 118 (424)
Q Consensus 79 ~~~LlvlD~~~~~--~~~~~~~~~~~~~~~~iiittr~~~~~ 118 (424)
+.-+||+|.++.. +++.++.-.....+..||+|.+..+..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccc
Confidence 3458999999764 223333111134577889998876653
No 212
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.38 E-value=0.0008 Score=62.80 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC---CC-CceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES---RR-FDIIFWENINTDGNIRDIQEIILERLKV 58 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 58 (424)
+++-|+|++|+|||+|+.+++-..... .. -..++||+....+.++.+.+ +++.++.
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 467799999999999999997544211 11 24699999999888888765 4555544
No 213
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.37 E-value=0.0029 Score=66.42 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
++.++|++|+|||++|+.+++.. ...|-. ++++...+..++... .........+.....+.+. ...+-+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l--~~~~~~---i~~~~~~~~~~i~g~-----~~~~~g~~~g~i~~~l~~~-~~~~~v 417 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL--NRKFVR---FSLGGVRDEAEIRGH-----RRTYVGAMPGRIIQGLKKA-KTKNPL 417 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--cCCeEE---EeCCCcccHHHHcCC-----CCceeCCCCchHHHHHHHh-CcCCCE
Confidence 68899999999999999999988 334322 233332232222110 0011111122222333322 223447
Q ss_pred EEEcCCCCcch------hhhh----------ccCCC-------CCCcEEEEEecchhhhc----ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEIN------FKEI----------GMHDD-------HGRGKVVFACRSREFCW----QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~~------~~~~----------~~~~~-------~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~ 135 (424)
++||+++.... .+.+ .+.+. .++.-+|.||....... .....+++.+++.++-
T Consensus 418 illDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~ 497 (775)
T TIGR00763 418 FLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEK 497 (775)
T ss_pred EEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHH
Confidence 89999876521 0111 01111 12333444554433222 5556889999999998
Q ss_pred HHHHHHHh
Q 037045 136 KKLFWEVV 143 (424)
Q Consensus 136 ~~l~~~~~ 143 (424)
.+++.++.
T Consensus 498 ~~I~~~~l 505 (775)
T TIGR00763 498 LEIAKKYL 505 (775)
T ss_pred HHHHHHHH
Confidence 88887654
No 214
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.36 E-value=0.0013 Score=57.80 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG 43 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 43 (424)
+++.|+|++|+||||++.+++.... ..-..++|++.....
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~ 59 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLS 59 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCC
Confidence 4788999999999999999998873 334568888765443
No 215
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=9.5e-06 Score=71.66 Aligned_cols=150 Identities=18% Similarity=0.093 Sum_probs=96.9
Q ss_pred ccceeEEEeeccCCCCC--CCCcCcccccEEEccC-CCCCCCCh-HHhcccCCCcEEEccCCCC-CcCC-hhhh-ccccc
Q 037045 262 DAHTKRLSLFGFPSSTL--PDMPNCCEILTLILEG-KRLEKLPT-SFFDYMCHLQLLDLHETNI-GCLP-PSIS-RLINL 334 (424)
Q Consensus 262 ~~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~~L~~L~l~~~~~-~~~p-~~~~-~l~~L 334 (424)
++.|+.|++.|+++... -.++.-.+|+.|++++ +.+++... -.+..++.|..|++++|.+ ...- -.+. --++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 37888888888888862 3457778899999985 45664332 2356788899999998865 2211 1111 12557
Q ss_pred ceeeeccccccc---ccCChhhhccCCCCEEEecCCc-Cc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcCh
Q 037045 335 NALFLRSSCSLL---LQLPAEIGRLQKLEILDVSHTK-VQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISL 409 (424)
Q Consensus 335 ~~l~l~~~~~~~---~~lp~~~~~l~~L~~L~l~~~~-i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~ 409 (424)
..||++ ++.+. ..+..-..++++|.+||++.|- ++ ..-..+.+++-|+++.++.|-.. ....+
T Consensus 289 ~~LNls-G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-----------~p~~~ 356 (419)
T KOG2120|consen 289 TQLNLS-GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-----------IPETL 356 (419)
T ss_pred hhhhhh-hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-----------ChHHe
Confidence 777873 22221 1223334578999999998874 66 44445778888999999988421 22344
Q ss_pred hhhhccccCceeec
Q 037045 410 NIISKLRLLEELII 423 (424)
Q Consensus 410 ~~l~~l~~L~~L~l 423 (424)
-++...++|.+|++
T Consensus 357 ~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 357 LELNSKPSLVYLDV 370 (419)
T ss_pred eeeccCcceEEEEe
Confidence 56677777777765
No 216
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.36 E-value=0.00072 Score=60.66 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=54.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhH------
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDL------ 67 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~------ 67 (424)
-++|.|.+|+|||||++++++... .+| +.++++-++.. .+..++.+.+...=... . ...+...
T Consensus 71 r~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred EEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999999884 344 45677777664 45666776665432111 1 1111111
Q ss_pred HHHHHHHHh--c-cCcEEEEEcCCCCc
Q 037045 68 RADIISKEL--N-DRSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~~~~l~~~l--~-~~~~LlvlD~~~~~ 91 (424)
..-.+.+.+ + ++++|+++|++-..
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 112334444 2 78999999998654
No 217
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.36 E-value=0.00098 Score=61.68 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC----CCCceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES----RRFDIIFWENINTDGNIRDIQEIILERLKV 58 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 58 (424)
+++-|+|++|+|||+|+.+++-..... ..-..++|++....++++.+.+ +++.++.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 477899999999999999988644211 1124699999988888888764 4555543
No 218
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0015 Score=65.05 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=76.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
++++++||+|+|||+|++.+++.. ...| +-+.++.-.+-..+.-+ ..+....=.+..+.-+ +..+.++=
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al--~Rkf---vR~sLGGvrDEAEIRGH-----RRTYIGamPGrIiQ~m-kka~~~NP 419 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKAL--GRKF---VRISLGGVRDEAEIRGH-----RRTYIGAMPGKIIQGM-KKAGVKNP 419 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHh--CCCE---EEEecCccccHHHhccc-----cccccccCChHHHHHH-HHhCCcCC
Confidence 489999999999999999999988 5555 33455555443332211 0111111111122222 22345677
Q ss_pred EEEEcCCCCcch----------hhhh------ccC------CCCCCcEEEEEecchhh-hc----ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEIN----------FKEI------GMH------DDHGRGKVVFACRSREF-CW----QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~~----------~~~~------~~~------~~~~~~~iiittr~~~~-~~----~~~~~~~l~~l~~~~ 134 (424)
|++||.++.+.. ++-+ .|. +..-...+.|+|-+..- .+ ....++++.+.+++|
T Consensus 420 v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~E 499 (782)
T COG0466 420 VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDE 499 (782)
T ss_pred eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHH
Confidence 999999986411 1111 111 11112234455554333 22 777899999999999
Q ss_pred HHHHHHHHhc
Q 037045 135 AKKLFWEVVG 144 (424)
Q Consensus 135 ~~~l~~~~~~ 144 (424)
-.++-+++..
T Consensus 500 Kl~IAk~~Li 509 (782)
T COG0466 500 KLEIAKRHLI 509 (782)
T ss_pred HHHHHHHhcc
Confidence 8888877763
No 219
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.35 E-value=0.0049 Score=55.80 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQ 49 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 49 (424)
-|.|.|++|+|||++|+.+++.. .. ..+.+++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l--g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR--DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh--CC---CEEEEeCCccCCHHHHh
Confidence 46789999999999999999855 22 23455555554444443
No 220
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0017 Score=58.58 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhc--
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELN-- 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~-- 77 (424)
+++=|+|+.|+||||+|.+++-.. ...-..++|++.-..++++.+..-....+..-. ...+.++....+....+
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999888 444558999999988888876543333222111 33333333433333332
Q ss_pred -cCcEEEEEcCCCC
Q 037045 78 -DRSYVLFLDGVSS 90 (424)
Q Consensus 78 -~~~~LlvlD~~~~ 90 (424)
.+--|+|+|.+-.
T Consensus 139 ~~~i~LvVVDSvaa 152 (279)
T COG0468 139 AEKIDLLVVDSVAA 152 (279)
T ss_pred cCCCCEEEEecCcc
Confidence 2234889998643
No 221
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.31 E-value=0.0043 Score=65.78 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC----Cce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR----FDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
-+.++|++|+|||++|+.++++...... ... ++.++++. +. . ........+.....+.+.+.
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l~----a---~~~~~g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------LI----A---GAKYRGEFEERLKAVLNEVT 262 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------Hh----h---cchhhhhHHHHHHHHHHHHH
Confidence 3568999999999999999998732111 122 33333211 10 0 00000111222222222222
Q ss_pred --cCcEEEEEcCCCCcc---------hhhhhccCCCCCCc-EEEEEecchhh---h---c---ccCceEEecCCCHHHHH
Q 037045 78 --DRSYVLFLDGVSSEI---------NFKEIGMHDDHGRG-KVVFACRSREF---C---W---QADGVIHVQQLCQREAK 136 (424)
Q Consensus 78 --~~~~LlvlD~~~~~~---------~~~~~~~~~~~~~~-~iiittr~~~~---~---~---~~~~~~~l~~l~~~~~~ 136 (424)
+++++|+||+++... +...+..|....|. .+|-+|....+ . . .....+.++..+.++..
T Consensus 263 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~ 342 (852)
T TIGR03346 263 KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTI 342 (852)
T ss_pred hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHH
Confidence 358999999988542 12233223222333 55555554433 1 1 55667889999999999
Q ss_pred HHHHHHh
Q 037045 137 KLFWEVV 143 (424)
Q Consensus 137 ~l~~~~~ 143 (424)
+++....
T Consensus 343 ~iL~~~~ 349 (852)
T TIGR03346 343 SILRGLK 349 (852)
T ss_pred HHHHHHH
Confidence 9987654
No 222
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.012 Score=54.54 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=87.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccC--------------CCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccCh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGES--------------RRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNN 65 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~ 65 (424)
...++|+.|+||+++|..+++..--. .|.| ..|+.-....+-...-..-+...+... .....
T Consensus 28 a~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~i 106 (314)
T PRK07399 28 AYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRL 106 (314)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccccccchhhhhhccccccccccCcH
Confidence 56789999999999999998875311 1122 334331100000000011111111000 11112
Q ss_pred hHHHHHHHHHhc-----cCcEEEEEcCCCCcch--hhhh-ccCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHH
Q 037045 66 DLRADIISKELN-----DRSYVLFLDGVSSEIN--FKEI-GMHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQR 133 (424)
Q Consensus 66 ~~~~~~l~~~l~-----~~~~LlvlD~~~~~~~--~~~~-~~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~ 133 (424)
++ +..+.+.+. +.+-++|+|+++.+.. .+.+ .....-+.+.+| +|++...+.+ +....+.+.+++++
T Consensus 107 d~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~ 185 (314)
T PRK07399 107 EQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDE 185 (314)
T ss_pred HH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHH
Confidence 22 223333332 4567999999987643 2222 111111134444 4444444444 88899999999999
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045 134 EAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~ 173 (424)
+..+.+.+...... .+.....++..++|.|.....
T Consensus 186 ~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 186 QLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHH
Confidence 99999988753221 011235788999999965443
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.30 E-value=0.00057 Score=57.93 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN 38 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 38 (424)
.+|.+.|++|+||||+|+.++... ...+..+++++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l--~~~~~~~~~~~ 42 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERL--KLKYSNVIYLD 42 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEe
Confidence 378999999999999999999988 44555555653
No 224
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.26 E-value=0.0046 Score=65.42 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC----Cc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR----FD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL- 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l- 76 (424)
-+.++|++|+|||++|+.+++......- .+ .+++++++.-...... . ...+...+.+.+.+
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~------------~-g~~e~~lk~~~~~~~ 267 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY------------R-GEFEERLKGVLNDLA 267 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch------------h-hhhHHHHHHHHHHHH
Confidence 3679999999999999999998732111 12 2344443321100000 0 01111122221211
Q ss_pred -ccCcEEEEEcCCCCcc---------hhhhhccCCCCCCc-EEEEEecchhhh------c---ccCceEEecCCCHHHHH
Q 037045 77 -NDRSYVLFLDGVSSEI---------NFKEIGMHDDHGRG-KVVFACRSREFC------W---QADGVIHVQQLCQREAK 136 (424)
Q Consensus 77 -~~~~~LlvlD~~~~~~---------~~~~~~~~~~~~~~-~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~ 136 (424)
.+.+++|++|+++... +...+..|.-..|. ++|-+|....+. . .....+.+..-+.+++.
T Consensus 268 ~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~ 347 (857)
T PRK10865 268 KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 347 (857)
T ss_pred HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHH
Confidence 2468999999987652 22333233223333 555555544431 1 44456777877999999
Q ss_pred HHHHHHh
Q 037045 137 KLFWEVV 143 (424)
Q Consensus 137 ~l~~~~~ 143 (424)
++++...
T Consensus 348 ~iL~~l~ 354 (857)
T PRK10865 348 AILRGLK 354 (857)
T ss_pred HHHHHHh
Confidence 9886554
No 225
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0065 Score=58.37 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc----c
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN----D 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~ 78 (424)
-+.++|++|+|||+||.+++... .|..+--++ +++. ...++.....++.+.+. .
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiS------pe~m------------iG~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS----DFPFVKIIS------PEDM------------IGLSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc----CCCeEEEeC------hHHc------------cCccHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999855 454332222 1111 12222333444444443 4
Q ss_pred CcEEEEEcCCCCcchhhhhc-----------------cCCCCCCcEEEEEecchhhhc------ccCceEEecCCCH-HH
Q 037045 79 RSYVLFLDGVSSEINFKEIG-----------------MHDDHGRGKVVFACRSREFCW------QADGVIHVQQLCQ-RE 134 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~~~~~~-----------------~~~~~~~~~iiittr~~~~~~------~~~~~~~l~~l~~-~~ 134 (424)
.--.+|+||++...+|-.++ -|+.+++--|+-||..+.+.. -....+.++.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 45689999998875544331 123333334445666666655 4456777887776 66
Q ss_pred HHHHHHHH
Q 037045 135 AKKLFWEV 142 (424)
Q Consensus 135 ~~~l~~~~ 142 (424)
..+.+...
T Consensus 678 ~~~vl~~~ 685 (744)
T KOG0741|consen 678 LLEVLEEL 685 (744)
T ss_pred HHHHHHHc
Confidence 66666544
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0046 Score=60.98 Aligned_cols=143 Identities=14% Similarity=0.217 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+=|.++||+|+|||++|+.+++.. .-.| +.+..+ +++...- ..++....+.+++.-+-..+
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~--~~nF-----lsvkgp--------EL~sk~v----GeSEr~ir~iF~kAR~~aP~ 529 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEA--GMNF-----LSVKGP--------ELFSKYV----GESERAIREVFRKARQVAPC 529 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhh--cCCe-----eeccCH--------HHHHHhc----CchHHHHHHHHHHHhhcCCe
Confidence 447899999999999999999988 4444 222222 1111111 11122222222222234579
Q ss_pred EEEEcCCCCcc-------------hhh----hh-ccCCCCCCcEEEE--Eecchhhhc------ccCceEEecCCCHHHH
Q 037045 82 VLFLDGVSSEI-------------NFK----EI-GMHDDHGRGKVVF--ACRSREFCW------QADGVIHVQQLCQREA 135 (424)
Q Consensus 82 LlvlD~~~~~~-------------~~~----~~-~~~~~~~~~~iii--ttr~~~~~~------~~~~~~~l~~l~~~~~ 135 (424)
++.||.++... .+. ++ ++ ...+.-+|| |.|...+-. ..+..+.++.=+.+..
T Consensus 530 IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~--e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 530 IIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL--EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred EEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc--cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHH
Confidence 99999987531 122 22 11 111233333 444333332 5677888887777888
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++|+.++.+...... -...+|++...|+-
T Consensus 608 ~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 608 LEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 8999998876522221 23455666666654
No 227
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.00078 Score=57.01 Aligned_cols=71 Identities=21% Similarity=0.371 Sum_probs=41.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.|+|+.|+|||.||..+++.... +--.+.|+. ..+++..+ ........... .+ +.+. +-=||
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~------~~~L~~~l----~~~~~~~~~~~---~~-~~l~-~~dlL 112 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT------ASDLLDEL----KQSRSDGSYEE---LL-KRLK-RVDLL 112 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE------HHHHHHHH----HCCHCCTTHCH---HH-HHHH-TSSCE
T ss_pred EEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee------cCceeccc----cccccccchhh---hc-Cccc-cccEe
Confidence 789999999999999999988742 223356654 33444444 32221111122 22 2222 23478
Q ss_pred EEcCCCCc
Q 037045 84 FLDGVSSE 91 (424)
Q Consensus 84 vlD~~~~~ 91 (424)
||||+...
T Consensus 113 ilDDlG~~ 120 (178)
T PF01695_consen 113 ILDDLGYE 120 (178)
T ss_dssp EEETCTSS
T ss_pred ccccccee
Confidence 89998654
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.002 Score=60.71 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 79 (424)
++++++|+.|+||||++.+++.....+.....+..+..... ....+-++...+.++.+. ...+..+....+ ..+.++
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~~ 216 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRNK 216 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcCC
Confidence 47899999999999999999988632222245666665443 234445555566666554 222223333333 334444
Q ss_pred cEEEEEcCCCCc
Q 037045 80 SYVLFLDGVSSE 91 (424)
Q Consensus 80 ~~LlvlD~~~~~ 91 (424)
-+++||.....
T Consensus 217 -DlVLIDTaG~~ 227 (374)
T PRK14722 217 -HMVLIDTIGMS 227 (374)
T ss_pred -CEEEEcCCCCC
Confidence 45669987543
No 229
>PRK06217 hypothetical protein; Validated
Probab=97.20 E-value=0.0017 Score=55.35 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCC--ceEEEE
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRF--DIIFWE 37 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv 37 (424)
|..|+|.|.+|+||||+|+++.+.... .++ |.++|.
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 456999999999999999999998742 233 446664
No 230
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.19 E-value=0.0018 Score=59.54 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++-|+|+.|+||||||.+++.... ..-..++|++.....++.. ++.++.+. .+...++....+.+.
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 5889999999999999999998873 3345589999887766543 33344332 344556666777776
Q ss_pred hccCc-EEEEEcCCCCc
Q 037045 76 LNDRS-YVLFLDGVSSE 91 (424)
Q Consensus 76 l~~~~-~LlvlD~~~~~ 91 (424)
++... -++|+|-+-..
T Consensus 127 irsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHTTSESEEEEE-CTT-
T ss_pred hhcccccEEEEecCccc
Confidence 66654 38899987554
No 231
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.19 E-value=0.00094 Score=57.72 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
++|.|.|+.|+||||+++.++.... ......++..-... . .........+.......+.......++..++...=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~~~-E--~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIEDPI-E--FVHESKRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcCCc-c--ccccCccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 4789999999999999999888773 33333333221111 1 00000000011111111223345566677777777
Q ss_pred EEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045 82 VLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF 117 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~ 117 (424)
++++|++.+.+.+... +.....|..++.|+.....
T Consensus 77 ~ii~gEird~e~~~~~-l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 77 VILVGEMRDLETIRLA-LTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred EEEEcCCCCHHHHHHH-HHHHHcCCEEEEEecCCcH
Confidence 9999999877655443 1112345556666665544
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0061 Score=60.75 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.++|++|+|||.||+.++... ..+|-.+..-.+.. .. -..........+....+...+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~~l~s-------------k~----vGesek~ir~~F~~A~~~~p~ 337 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALES--RSRFISVKGSELLS-------------KW----VGESEKNIRELFEKARKLAPS 337 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCHHHhc-------------cc----cchHHHHHHHHHHHHHcCCCc
Confidence 368899999999999999999976 45554332211100 00 011111122222333346789
Q ss_pred EEEEcCCCCcc-------------hhhhhccC----CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045 82 VLFLDGVSSEI-------------NFKEIGMH----DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 82 LlvlD~~~~~~-------------~~~~~~~~----~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~ 137 (424)
+|.+|+++... ...++... ....+..+|-+|....... .-+..+.+..-+.++..+
T Consensus 338 iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~ 417 (494)
T COG0464 338 IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLE 417 (494)
T ss_pred EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHH
Confidence 99999987631 12222111 2222333444444433333 446688888999999999
Q ss_pred HHHHHhcccCCCCccHHHHHHHHHHhcCC
Q 037045 138 LFWEVVGVHLKKYPDIELVADSIVKECGG 166 (424)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g 166 (424)
.|+.+....... ...+-..+.+++...|
T Consensus 418 i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 418 IFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 999988754211 1122234455555554
No 233
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0029 Score=65.44 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=69.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCC---C-CceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-cc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESR---R-FDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-ND 78 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~ 78 (424)
+.++|++|+|||++|+.+++...... . .+..+|.. ++..+ . ....-....+...+.+.+.+ +.
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l---aG~~~~Ge~e~rl~~l~~~l~~~ 277 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L---AGTKYRGDFEKRFKALLKQLEQD 277 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h---cccchhhhHHHHHHHHHHHHHhc
Confidence 56899999999999999998753211 1 13344421 11111 1 11110111222223232333 24
Q ss_pred CcEEEEEcCCCCc----------chhhhhccCC-CCCCcEEEEEecchhhh------c---ccCceEEecCCCHHHHHHH
Q 037045 79 RSYVLFLDGVSSE----------INFKEIGMHD-DHGRGKVVFACRSREFC------W---QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 79 ~~~LlvlD~~~~~----------~~~~~~~~~~-~~~~~~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~~l 138 (424)
.+.+|+||+++.. .+...+..|. ....-++|-+|....+. + .....+++++.+.+++.++
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~I 357 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357 (758)
T ss_pred CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence 5789999998753 1222221221 22233555555543321 1 5557899999999999999
Q ss_pred HHHHh
Q 037045 139 FWEVV 143 (424)
Q Consensus 139 ~~~~~ 143 (424)
+....
T Consensus 358 L~~~~ 362 (758)
T PRK11034 358 INGLK 362 (758)
T ss_pred HHHHH
Confidence 98654
No 234
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.16 E-value=0.0018 Score=60.05 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC---C-CCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES---R-RFDIIFWENINTDGNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 57 (424)
.++.|+|++|+|||+|+.+++...... . .-..++|++....++.+.+ .++++.++
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 478899999999999999998643211 1 1235799998887777764 33444443
No 235
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.16 E-value=0.0025 Score=59.49 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFWENINTDGNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 57 (424)
+++-|+|++|+|||+++.+++........ -..++|++....++++.+.+. ++.++
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 47789999999999999999987532211 147999999888787776543 34443
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0024 Score=60.09 Aligned_cols=87 Identities=11% Similarity=0.179 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 79 (424)
++|+|+|++|+||||++.+++.... ..-..+..++..... ...+-++.....++.+. ...+.......+...-...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 5899999999999999999998774 222245566655442 12222333334444433 2334444444443322222
Q ss_pred -cEEEEEcCCCC
Q 037045 80 -SYVLFLDGVSS 90 (424)
Q Consensus 80 -~~LlvlD~~~~ 90 (424)
.=++++|-...
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 23778887654
No 237
>PTZ00035 Rad51 protein; Provisional
Probab=97.15 E-value=0.0027 Score=59.47 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc---C-CCCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE---S-RRFDIIFWENINTDGNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 57 (424)
+++.|+|++|+|||+|+..++-.... . ..-..++|++....++++.+. ++++.++
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g 177 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFG 177 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhC
Confidence 47889999999999999999865531 1 122457899987777777643 3445444
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0016 Score=60.64 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI 39 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 39 (424)
-+.++|+.|+|||.||..+++... ..-..++|+++
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~ 219 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA 219 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH
Confidence 478999999999999999999884 22234666553
No 239
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.11 E-value=0.00063 Score=57.11 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN 44 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 44 (424)
..+.+.|+.|+|||.+|+.+++.... ......+-++++....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 57889999999999999999999931 5666778888888766
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.10 E-value=0.011 Score=62.70 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-cE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR-SY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~ 81 (424)
++.++|+.|+|||++|+.+++... ......+.++++...... .+..-++.+......++ ...+.+..+.+ .-
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~~~----~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~ 672 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFMEKH----SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYS 672 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhhhh----hHHHHhCCCCcccccch-hHHHHHHHHhCCCC
Confidence 578999999999999999998762 222334556655432211 11122332221111111 11233333333 35
Q ss_pred EEEEcCCCCc
Q 037045 82 VLFLDGVSSE 91 (424)
Q Consensus 82 LlvlD~~~~~ 91 (424)
+|+||+++..
T Consensus 673 vLllDEieka 682 (857)
T PRK10865 673 VILLDEVEKA 682 (857)
T ss_pred eEEEeehhhC
Confidence 9999999864
No 241
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.016 Score=54.30 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=54.7
Q ss_pred cCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
+++-++|||+++.+.. -..+ . +-.-..++.+|++|.+ ..+.+ +....+.+.+++.+++.+.+....+.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~---- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM---- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC----
Confidence 4566999999998743 2222 1 1122334555555554 44444 66788999999999998887654221
Q ss_pred CccHHHHHHHHHHhcCCchHH
Q 037045 150 YPDIELVADSIVKECGGMPYM 170 (424)
Q Consensus 150 ~~~~~~~~~~I~~~~~g~Pla 170 (424)
.++.+..+++.++|.|..
T Consensus 183 ---~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 183 ---SQDALLAALRLSAGAPGA 200 (334)
T ss_pred ---CHHHHHHHHHHcCCCHHH
Confidence 133467789999999953
No 242
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.09 E-value=0.00028 Score=63.93 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=95.2
Q ss_pred cCcccccEEEccCCCCCCC-C---hHHhcccCCCcEEEccCCCCCcCC--------------hhhhcccccceeeecccc
Q 037045 282 PNCCEILTLILEGKRLEKL-P---TSFFDYMCHLQLLDLHETNIGCLP--------------PSISRLINLNALFLRSSC 343 (424)
Q Consensus 282 ~~~~~L~~L~l~~~~l~~~-~---~~~~~~~~~L~~L~l~~~~~~~~p--------------~~~~~l~~L~~l~l~~~~ 343 (424)
..|+.|+.|+||.|.+..- + ...++.+..|+.|.+.+|.++... .....-+.|+.+.+ .+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~--~r 166 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC--GR 166 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe--ec
Confidence 6677999999999999832 2 233566889999999999874332 12345678999998 88
Q ss_pred cccccCC-----hhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhh
Q 037045 344 SLLLQLP-----AEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIIS 413 (424)
Q Consensus 344 ~~~~~lp-----~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~ 413 (424)
|++..-+ ..+...+.|..+.+..|+|.. +-..+..+++|+.|++++|.++. -+....-+.++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~--------egs~~LakaL~ 238 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL--------EGSVALAKALS 238 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh--------HHHHHHHHHhc
Confidence 8887654 345667899999999988662 22346899999999999997631 12334455667
Q ss_pred ccccCceeecC
Q 037045 414 KLRLLEELIIE 424 (424)
Q Consensus 414 ~l~~L~~L~l~ 424 (424)
.+++|+.|+++
T Consensus 239 s~~~L~El~l~ 249 (382)
T KOG1909|consen 239 SWPHLRELNLG 249 (382)
T ss_pred ccchheeeccc
Confidence 77777777653
No 243
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.09 E-value=0.003 Score=57.81 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=47.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 79 (424)
++++|+|+.|+||||++.+++.....+..-..+..++...+.. ....+......++.+. ...+..+....+. .+.+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~~- 272 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLRD- 272 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-HccC-
Confidence 4899999999999999999998874221123466677655321 2223333334344333 2223333333333 2333
Q ss_pred cEEEEEcCC
Q 037045 80 SYVLFLDGV 88 (424)
Q Consensus 80 ~~LlvlD~~ 88 (424)
.=++++|..
T Consensus 273 ~d~vliDt~ 281 (282)
T TIGR03499 273 KDLILIDTA 281 (282)
T ss_pred CCEEEEeCC
Confidence 347777753
No 244
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.08 E-value=0.0026 Score=53.71 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc----cccChhHHH-HHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA----KELNNDLRA-DIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~----~~~~~~~~~-~~l~~~l 76 (424)
++.+.|++|+||||++..++.... ..-..++.++..... ...+.+.......+... ...+..+.. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998874 222345556654432 22333333344444322 112222222 2233323
Q ss_pred ccCcEEEEEcCCCCc
Q 037045 77 NDRSYVLFLDGVSSE 91 (424)
Q Consensus 77 ~~~~~LlvlD~~~~~ 91 (424)
.+..-++|+|-....
T Consensus 80 ~~~~d~viiDt~g~~ 94 (173)
T cd03115 80 EENFDVVIVDTAGRL 94 (173)
T ss_pred hCCCCEEEEECcccc
Confidence 333336668876553
No 245
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=0.0059 Score=61.72 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=33.2
Q ss_pred cCceEEecCCCHHHHHHHHHHHhcccCCC--C---ccHHHHHHHHHHhcCCchHHH
Q 037045 121 ADGVIHVQQLCQREAKKLFWEVVGVHLKK--Y---PDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 121 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~--~---~~~~~~~~~I~~~~~g~Plai 171 (424)
....+.+.++...+-.+.+.+.+...... . ....+....|+..+.|.-...
T Consensus 265 rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsA 320 (637)
T TIGR00602 265 RVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSA 320 (637)
T ss_pred ceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHH
Confidence 44568999999999888887777543110 1 112456677888888866433
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.08 E-value=0.0019 Score=64.27 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--ccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--NDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~~ 79 (424)
+|..++|++|.||||||+-++++. .| .++-|+.+...+...+-+.|...+.... .+ .++
T Consensus 327 KilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~adsr 387 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADSR 387 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCCC
Confidence 578999999999999999999976 23 3678888888888888888877665432 22 256
Q ss_pred cEEEEEcCCCCc
Q 037045 80 SYVLFLDGVSSE 91 (424)
Q Consensus 80 ~~LlvlD~~~~~ 91 (424)
+.-||+|.++..
T Consensus 388 P~CLViDEIDGa 399 (877)
T KOG1969|consen 388 PVCLVIDEIDGA 399 (877)
T ss_pred cceEEEecccCC
Confidence 777889998865
No 247
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.044 Score=50.77 Aligned_cols=151 Identities=7% Similarity=-0.024 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---------cccChhHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---------KELNNDLRADIIS 73 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~l~ 73 (424)
.+.++|+.|+||+++|..+++..-=...-+. .++.. ...+.+...--... .....++.. .+.
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR-~l~ 97 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDLHVIKPEKEGKSITVEQIR-QCN 97 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCEEEEecCcCCCcCCHHHHH-HHH
Confidence 4678999999999999999887631110000 01111 11111111100000 011122221 222
Q ss_pred HHh-----ccCcEEEEEcCCCCcch--hhhh-cc-CCCCCCcEEEEE-ecchhhhc---ccCceEEecCCCHHHHHHHHH
Q 037045 74 KEL-----NDRSYVLFLDGVSSEIN--FKEI-GM-HDDHGRGKVVFA-CRSREFCW---QADGVIHVQQLCQREAKKLFW 140 (424)
Q Consensus 74 ~~l-----~~~~~LlvlD~~~~~~~--~~~~-~~-~~~~~~~~iiit-tr~~~~~~---~~~~~~~l~~l~~~~~~~l~~ 140 (424)
+.+ .+..-++|||+++.+.. ...+ .. -.-..++.+|++ ++...+.+ +....+.+.+++.+++.+.+.
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 222 23456999999998743 2222 11 122234555554 44445554 888899999999999998886
Q ss_pred HHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 141 EVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.... . .+..+++.++|.|....
T Consensus 178 ~~~~----~------~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 178 GQGI----T------VPAYALKLNMGSPLKTL 199 (319)
T ss_pred HcCC----c------hHHHHHHHcCCCHHHHH
Confidence 5311 1 13467889999997643
No 248
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.06 E-value=0.0083 Score=61.50 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=75.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
|.|+|++|+|||++|+.++.... ..| +.++.+. +.... .+ .........+.......+++|
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~------~~~~~---~g-----~~~~~~~~~f~~a~~~~P~Ii 248 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSD------FVEMF---VG-----VGASRVRDMFEQAKKAAPCII 248 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHH------hHHhh---hc-----ccHHHHHHHHHHHHhcCCcEE
Confidence 78999999999999999998773 333 2222211 11100 00 011112222223333468999
Q ss_pred EEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHH
Q 037045 84 FLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAK 136 (424)
Q Consensus 84 vlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~ 136 (424)
+||+++... .+..+ .+- ....+.-+|.||....... ..+..+.+..-+.++-.
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHH
Confidence 999987641 11122 001 1122333444555444322 34577888888888888
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHHhcCCc
Q 037045 137 KLFWEVVGVHLKKYPDIELVADSIVKECGGM 167 (424)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~ 167 (424)
+++..+......... .....+++.+.|+
T Consensus 329 ~Il~~~~~~~~l~~~---~d~~~la~~t~G~ 356 (644)
T PRK10733 329 QILKVHMRRVPLAPD---IDAAIIARGTPGF 356 (644)
T ss_pred HHHHHHhhcCCCCCc---CCHHHHHhhCCCC
Confidence 888887755421111 1234577777663
No 249
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.05 E-value=0.0039 Score=55.58 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII 52 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 52 (424)
+++.|.|++|+|||++|.++..... ..-..++|++... +++++.+.+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence 4789999999999999999877652 3356688888654 455555553
No 250
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.05 E-value=0.0092 Score=62.45 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.|+|++|+|||+||+.+++.. ...| +.++... +. ... ...........+.........+
T Consensus 214 giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~------i~----~~~----~g~~~~~l~~lf~~a~~~~p~i 274 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPE------IM----SKY----YGESEERLREIFKEAEENAPSI 274 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHH------Hh----ccc----ccHHHHHHHHHHHHHHhcCCcE
Confidence 47899999999999999999977 2222 2222211 00 000 0001111222222233456789
Q ss_pred EEEcCCCCcc-------------hhhhh-c-cC-CCCCCcEEEE-Eecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045 83 LFLDGVSSEI-------------NFKEI-G-MH-DDHGRGKVVF-ACRSREFCW-------QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 83 lvlD~~~~~~-------------~~~~~-~-~~-~~~~~~~iii-ttr~~~~~~-------~~~~~~~l~~l~~~~~~~l 138 (424)
|+||+++... ....+ . +- ....+..++| +|....... .....+.+...+.++..++
T Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 275 IFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred EEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 9999986531 11122 1 11 1122334444 444322111 2345778888888888888
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
+.......... .+.....+++.+.|+-
T Consensus 355 l~~~~~~~~l~---~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 355 LKVHTRNMPLA---EDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHhcCCCCc---cccCHHHHHHhCCCCC
Confidence 88655332111 1223566888888865
No 251
>PRK08233 hypothetical protein; Provisional
Probab=97.03 E-value=0.0023 Score=54.39 Aligned_cols=25 Identities=44% Similarity=0.498 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+||||+|+.++....
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999998873
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0032 Score=56.01 Aligned_cols=97 Identities=12% Similarity=0.208 Sum_probs=53.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-.... ..... ...+.+.+. +.=+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~--~~~~~----~~~~l~~l~-~~dl 165 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFS--NSETS----EEQLLNDLS-NVDL 165 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHh--hcccc----HHHHHHHhc-cCCE
Confidence 578999999999999999999884 3333456654 3444444433332 11111 122333344 2338
Q ss_pred EEEcCCCCc--chhhhh-cc--C--CCCCCcEEEEEecc
Q 037045 83 LFLDGVSSE--INFKEI-GM--H--DDHGRGKVVFACRS 114 (424)
Q Consensus 83 lvlD~~~~~--~~~~~~-~~--~--~~~~~~~iiittr~ 114 (424)
|||||+... .+|+.- .+ . .......+||||..
T Consensus 166 LvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 166 LVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 888998654 333321 11 1 22334556666654
No 253
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.02 E-value=0.0046 Score=53.26 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCc---eEEEEEeccCCCHHHHHHHHHHHh----c-ccccccChhHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFD---IIFWENINTDGNIRDIQEIILERL----K-VNAKELNNDLRADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~-~~~~~~~~~~~~~~l~~ 74 (424)
||+|.|++|+||||+|+.+...... .... .+.................- ... . ......+.+.....+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDRK-GRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHHH-HHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhHh-hccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999999852 2222 23444433332222222211 111 0 11144555566666666
Q ss_pred HhccCcEEE
Q 037045 75 ELNDRSYVL 83 (424)
Q Consensus 75 ~l~~~~~Ll 83 (424)
...++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 555565544
No 254
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.01 E-value=0.0021 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|.|.|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999977
No 255
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.01 E-value=0.0015 Score=59.03 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|+.|.|+|.+|+||||+|+++.+...
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999999885
No 256
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.015 Score=57.99 Aligned_cols=142 Identities=11% Similarity=0.205 Sum_probs=82.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
|.++|++|+|||-||..++.... .-+|++..+. -+...+|.+ +......+.+.-..++|++
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~-------~~fisvKGPE-------lL~KyIGaS-----Eq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSN-------LRFISVKGPE-------LLSKYIGAS-----EQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCHH-------HHHHHhccc-----HHHHHHHHHHhhccCCeEE
Confidence 67999999999999999998772 2356665551 111223322 2222333333334589999
Q ss_pred EEcCCCCcc-------------hhhhh----ccCCCCCCcEEEE-Eecchhhhc------ccCceEEecCCCHHHHHHHH
Q 037045 84 FLDGVSSEI-------------NFKEI----GMHDDHGRGKVVF-ACRSREFCW------QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 84 vlD~~~~~~-------------~~~~~----~~~~~~~~~~iii-ttr~~~~~~------~~~~~~~l~~l~~~~~~~l~ 139 (424)
.||++++.. ...++ .-...-.|.-|+- |||.....+ .-++.+.-+.-++.|-.++|
T Consensus 765 FFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 765 FFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred EeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 999998741 23333 1112233444543 556544433 44444455556677788888
Q ss_pred HHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045 140 WEVVGVH-LKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 140 ~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P 168 (424)
+...... ... .-..+.++....|+-
T Consensus 845 ~~ls~s~~~~~----~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 845 QVLSNSLLKDT----DVDLECLAQKTDGFT 870 (952)
T ss_pred HHHhhccCCcc----ccchHHHhhhcCCCc
Confidence 8776533 112 223456777788775
No 257
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.00 E-value=0.012 Score=48.32 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC---CCHHHHHHHHHHHhc-----ccc--cccChh-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD---GNIRDIQEIILERLK-----VNA--KELNND----- 66 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~-----~~~--~~~~~~----- 66 (424)
..|-|++..|.||||+|-..+-+.. .+--.+.++.+-+. ..-..+++.+ ..+. ... ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688999999999999999988873 44344556554333 2223333333 1110 000 001111
Q ss_pred --HHHHHHHHHhccCcE-EEEEcCCCCcc-----hhhhh-c-cCCCCCCcEEEEEecchh
Q 037045 67 --LRADIISKELNDRSY-VLFLDGVSSEI-----NFKEI-G-MHDDHGRGKVVFACRSRE 116 (424)
Q Consensus 67 --~~~~~l~~~l~~~~~-LlvlD~~~~~~-----~~~~~-~-~~~~~~~~~iiittr~~~ 116 (424)
+.....++.+....| |+|||++--.. +.+.+ . +.....+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122344445555566 99999975431 22222 1 223444678999999854
No 258
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0024 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|+.|.+.|.+|+||||+|+++++...
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHH
Confidence 67899999999999999999998874
No 259
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.00 E-value=0.0024 Score=65.50 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++-|+|++|+|||||+.+++.... ..-..++|++.....++. .++.++... ...+.++....+...
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 4778999999999999999877662 333568999987766643 555565543 333445556666665
Q ss_pred hccC-cEEEEEcCCC
Q 037045 76 LNDR-SYVLFLDGVS 89 (424)
Q Consensus 76 l~~~-~~LlvlD~~~ 89 (424)
++.. --|+|+|.+.
T Consensus 134 v~~~~~~LVVIDSI~ 148 (790)
T PRK09519 134 IRSGALDIVVIDSVA 148 (790)
T ss_pred hhcCCCeEEEEcchh
Confidence 6554 5599999976
No 260
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.99 E-value=0.0087 Score=62.48 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc-CcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-RSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~ 81 (424)
++.++|+.|+|||.||+.+++... ...+.++++...+.. .+...++........++ ...+.+.++. ...
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~ 555 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----TVSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHC 555 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----cHHHHhcCCCCCcccch-hhHHHHHHHhCCCe
Confidence 467899999999999999999772 234666665543211 12222232221111111 1223333433 356
Q ss_pred EEEEcCCCCc
Q 037045 82 VLFLDGVSSE 91 (424)
Q Consensus 82 LlvlD~~~~~ 91 (424)
+++||+++..
T Consensus 556 VvllDEieka 565 (731)
T TIGR02639 556 VLLLDEIEKA 565 (731)
T ss_pred EEEEechhhc
Confidence 9999999865
No 261
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.99 E-value=0.00059 Score=54.32 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|+|.|++|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 262
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0013 Score=55.58 Aligned_cols=83 Identities=23% Similarity=0.471 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCce--EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc--
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI--IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-- 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-- 78 (424)
.|.|.|++|+||||+|+.+++... -.|.+. .+|-..... ..+...+...+.... -.+.+.....+...+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~~~~~~---t~lg~~~k~~i~~g~-lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAER---TELGEEIKKYIDKGE-LVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHhhhccC---ChHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhhc
Confidence 478999999999999999999864 223331 122111122 333444434333333 22223333444444433
Q ss_pred -CcEEEEEcCCCCc
Q 037045 79 -RSYVLFLDGVSSE 91 (424)
Q Consensus 79 -~~~LlvlD~~~~~ 91 (424)
.. .+|+|+.-..
T Consensus 77 ~~~-~~I~dg~PR~ 89 (178)
T COG0563 77 CKA-GFILDGFPRT 89 (178)
T ss_pred ccC-eEEEeCCCCc
Confidence 24 7888887554
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0029 Score=56.79 Aligned_cols=71 Identities=17% Similarity=0.336 Sum_probs=44.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.++|++|+|||.||..+.+... +..+. +.++ +..++..++...... +.....+.+.+ .+-=||
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~-------~~~~~~l~~~l-~~~dlL 171 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDE-------GRLEEKLLREL-KKVDLL 171 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhc-------CchHHHHHHHh-hcCCEE
Confidence 68999999999999999999995 33333 4443 455566666555442 11122222211 123389
Q ss_pred EEcCCCC
Q 037045 84 FLDGVSS 90 (424)
Q Consensus 84 vlD~~~~ 90 (424)
||||+.-
T Consensus 172 IiDDlG~ 178 (254)
T COG1484 172 IIDDIGY 178 (254)
T ss_pred EEecccC
Confidence 9999765
No 264
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.014 Score=57.19 Aligned_cols=158 Identities=19% Similarity=0.076 Sum_probs=92.1
Q ss_pred EEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH--hcccc----cccChhHHHHHHHHHh---
Q 037045 6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER--LKVNA----KELNNDLRADIISKEL--- 76 (424)
Q Consensus 6 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~----~~~~~~~~~~~l~~~l--- 76 (424)
..|+-|+||||+|+-++...- +.+- ....+++--...+.|... +..-+ .....++......+..
T Consensus 43 fsG~RGvGKTt~Ari~AkalN-C~~~------~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALN-CENG------PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred hcCCCCcCchhHHHHHHHHhc-CCCC------CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 579999999999999998763 1110 112222333333444333 11111 2223333232222222
Q ss_pred -ccCcEEEEEcCCCCcc--hhhhhccCCCCCC--cEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccC
Q 037045 77 -NDRSYVLFLDGVSSEI--NFKEIGMHDDHGR--GKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHL 147 (424)
Q Consensus 77 -~~~~~LlvlD~~~~~~--~~~~~~~~~~~~~--~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 147 (424)
.++--++|||+++-.+ .+..+.-....+. .+.|+.|++....+ +....+.+..++.++-.+.+...+..+
T Consensus 116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E- 194 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE- 194 (515)
T ss_pred ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhc-
Confidence 1234599999997653 4555522223333 34445555444444 889999999999999999999988766
Q ss_pred CCCccHHHHHHHHHHhcCCchHHHH
Q 037045 148 KKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 148 ~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
.-...++....|++...|.....-
T Consensus 195 -~I~~e~~aL~~ia~~a~Gs~RDal 218 (515)
T COG2812 195 -GINIEEDALSLIARAAEGSLRDAL 218 (515)
T ss_pred -CCccCHHHHHHHHHHcCCChhhHH
Confidence 233446677888888888665433
No 265
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0043 Score=61.71 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
++++.+||+|||||++|+.++... .+.| +-++++.-.+..++.-+= .+....=.+..+.-++ ..+-.+=
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~AL--nRkF---fRfSvGG~tDvAeIkGHR-----RTYVGAMPGkiIq~LK-~v~t~NP 507 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARAL--NRKF---FRFSVGGMTDVAEIKGHR-----RTYVGAMPGKIIQCLK-KVKTENP 507 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHh--CCce---EEEeccccccHHhhcccc-----eeeeccCChHHHHHHH-hhCCCCc
Confidence 589999999999999999999988 4555 334666655544433110 0111111111222222 2233567
Q ss_pred EEEEcCCCCcc---------hhhhhccCCC------------CCCcEEE-EEecch-hhhc----ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEI---------NFKEIGMHDD------------HGRGKVV-FACRSR-EFCW----QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~---------~~~~~~~~~~------------~~~~~ii-ittr~~-~~~~----~~~~~~~l~~l~~~~ 134 (424)
|+.||.++... .+-++.-|.+ ..=|+|+ |+|-+. +..+ ....+|++.+...+|
T Consensus 508 liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eE 587 (906)
T KOG2004|consen 508 LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEE 587 (906)
T ss_pred eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHH
Confidence 88899987531 1111111100 1124454 444332 2222 667899999999999
Q ss_pred HHHHHHHHhc
Q 037045 135 AKKLFWEVVG 144 (424)
Q Consensus 135 ~~~l~~~~~~ 144 (424)
-+++..+++.
T Consensus 588 Kv~IA~~yLi 597 (906)
T KOG2004|consen 588 KVKIAERYLI 597 (906)
T ss_pred HHHHHHHhhh
Confidence 8888877763
No 266
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.97 E-value=0.016 Score=61.60 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc-CcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-RSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~ 81 (424)
++.+.|+.|+|||++|+.+++... ......+.++++...+.... ..-++.+......++ ...+.+.++. ...
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~~----~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~ 669 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHSV----ARLIGAPPGYVGYEE-GGQLTEAVRRKPYS 669 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccchH----HHhcCCCCCccCccc-ccHHHHHHHcCCCc
Confidence 577899999999999999999872 33344566666654331111 112232221111111 1122233333 345
Q ss_pred EEEEcCCCCc
Q 037045 82 VLFLDGVSSE 91 (424)
Q Consensus 82 LlvlD~~~~~ 91 (424)
+|+||+++..
T Consensus 670 vlllDeieka 679 (852)
T TIGR03346 670 VVLFDEVEKA 679 (852)
T ss_pred EEEEeccccC
Confidence 9999999875
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=96.97 E-value=0.004 Score=56.15 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+.|+|++|+|||+||..++...
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 268
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.96 E-value=0.0093 Score=62.98 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~ 80 (424)
.++.++|+.|+|||.+|+.+++... ......+-++++.+.+.. .+..-++.+......++.. .+.+.++ ...
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~~~----~~~~l~g~~~gyvg~~~~g-~L~~~v~~~p~ 669 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAELLY--GGEQNLITINMSEFQEAH----TVSRLKGSPPGYVGYGEGG-VLTEAVRRKPY 669 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhhhh----hhccccCCCCCcccccccc-hHHHHHHhCCC
Confidence 4678999999999999999998872 223333444444432211 1112223322111111111 1223333 345
Q ss_pred EEEEEcCCCCc
Q 037045 81 YVLFLDGVSSE 91 (424)
Q Consensus 81 ~LlvlD~~~~~ 91 (424)
.+|+||+++..
T Consensus 670 svvllDEieka 680 (852)
T TIGR03345 670 SVVLLDEVEKA 680 (852)
T ss_pred cEEEEechhhc
Confidence 69999999764
No 269
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.95 E-value=0.0044 Score=57.73 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 57 (424)
+++-|+|++|+|||+++.+++....... .-..++||+....++++.+.+ +++.++
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4788999999999999999988763211 113699999988888777654 344443
No 270
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.93 E-value=0.0028 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+|.|.|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999873
No 271
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0044 Score=60.56 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 79 (424)
++|+|+|+.|+||||++.+++.....+.....+..++...+.. ..+.++.....++... ...+.......+. .+. .
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l~-~ 428 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLR-D 428 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hhc-c
Confidence 5899999999999999999998763222234466666543321 2222223333333322 2222233333333 233 3
Q ss_pred cEEEEEcCCCC
Q 037045 80 SYVLFLDGVSS 90 (424)
Q Consensus 80 ~~LlvlD~~~~ 90 (424)
.-+|++|....
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 44888898753
No 272
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.92 E-value=0.0056 Score=57.27 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=40.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC---C-CCceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES---R-RFDIIFWENINTDGNIRDIQEIILERLKV 58 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 58 (424)
.++-|+|++|+|||+++..++-..... . .-..++|++....++++.+. ++++.++.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 467899999999999999888654211 1 11369999999988888765 44555543
No 273
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.023 Score=52.94 Aligned_cols=64 Identities=8% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045 79 RSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEV 142 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~ 142 (424)
++-++|+|+++.... ...+ .+-....++.+|++|.+.. +.+ .....+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344566788877532 1111 0111123466676776644 333 67888999999999998888653
No 274
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.91 E-value=0.0051 Score=55.15 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=57.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc--CCCCceEEEEEeccC-CCHHHHHHHHHHHhcc--cc-----cccChhH-----
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE--SRRFDIIFWENINTD-GNIRDIQEIILERLKV--NA-----KELNNDL----- 67 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~--~~-----~~~~~~~----- 67 (424)
-++|.|.+|+|||+|+.++.++... +.+-+.++++-+++. .+..++.+++...=.. .. ...+...
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~ 150 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP 150 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence 5789999999999999999887631 233577899988875 4566777766554221 11 1111111
Q ss_pred -HHHHHHHHhc---cCcEEEEEcCCCCc
Q 037045 68 -RADIISKELN---DRSYVLFLDGVSSE 91 (424)
Q Consensus 68 -~~~~l~~~l~---~~~~LlvlD~~~~~ 91 (424)
..-.+.++++ ++++|+++||+-..
T Consensus 151 ~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 151 RMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1123344443 57999999998654
No 275
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0054 Score=54.37 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=69.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-----CCCHHHHHHHHHHHhcccc-------cccChhHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-----DGNIRDIQEIILERLKVNA-------KELNNDLRA 69 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~ 69 (424)
.+++|+|.+|+||||+++.+..-. +.....+.| .-.. .....+...+++...+... .+.+-++.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~--~pt~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLE--EPTSGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCc--CCCCceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 368999999999999999999877 233333333 3111 2233445566667666544 233333333
Q ss_pred H-HHHHHhccCcEEEEEcCCCCcchh---hhh-c-cC--CCCCCcEEEEEecchhhhc
Q 037045 70 D-IISKELNDRSYVLFLDGVSSEINF---KEI-G-MH--DDHGRGKVVFACRSREFCW 119 (424)
Q Consensus 70 ~-~l~~~l~~~~~LlvlD~~~~~~~~---~~~-~-~~--~~~~~~~iiittr~~~~~~ 119 (424)
. .+.+.+.-+.-++|.|...+..|. .++ . +. ....+-..+..|.+-.+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 3 345556678899999997765432 111 0 11 3444666777777776665
No 276
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0077 Score=55.41 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=77.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----cc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----ND 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~ 78 (424)
-|.++||+|+|||-||+.++.+. ...|-.+ .++...+ +.+ ++..+.++..+ +=
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akea--ga~fInv---~~s~lt~-KWf-----------------gE~eKlv~AvFslAsKl 185 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEA--GANFINV---SVSNLTS-KWF-----------------GEAQKLVKAVFSLASKL 185 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHc--CCCccee---eccccch-hhH-----------------HHHHHHHHHHHhhhhhc
Confidence 47789999999999999999988 4555322 2222111 111 11112222211 12
Q ss_pred CcEEEEEcCCCCcc--------------------hhhhhccCCCCCCcEEEE---Eecchhhhc----ccCceEEecCCC
Q 037045 79 RSYVLFLDGVSSEI--------------------NFKEIGMHDDHGRGKVVF---ACRSREFCW----QADGVIHVQQLC 131 (424)
Q Consensus 79 ~~~LlvlD~~~~~~--------------------~~~~~~~~~~~~~~~iii---ttr~~~~~~----~~~~~~~l~~l~ 131 (424)
+++.+.+|.+++.. .|+.+ ....+++|+| |.|..+... .....+.+.--+
T Consensus 186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl---~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~ 262 (386)
T KOG0737|consen 186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGL---SSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPD 262 (386)
T ss_pred CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccc---cCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCc
Confidence 57888888876531 12222 2334556665 666655544 556666666555
Q ss_pred HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++-.++++-....+...+ +-...+|++.+.|+-
T Consensus 263 ~~qR~kILkviLk~e~~e~---~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 263 AEQRRKILKVILKKEKLED---DVDLDEIAQMTEGYS 296 (386)
T ss_pred hhhHHHHHHHHhcccccCc---ccCHHHHHHhcCCCc
Confidence 5666666666665442111 113566888888874
No 277
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.89 E-value=0.00062 Score=55.69 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN 38 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 38 (424)
-+|.|+|.+|+||||||+.+.+... ..-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEec
Confidence 3799999999999999999999994 4445566665
No 278
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.89 E-value=0.018 Score=47.94 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCc------------------eEEEEEeccC---CCHHHHHHHHHHHhccccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFD------------------IIFWENINTD---GNIRDIQEIILERLKVNAK 61 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~------------------~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~ 61 (424)
.+.++|+.|+||+++|..+++..--..... -+.|+.-... ...+++. ++...+....
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~- 98 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSP- 98 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHH-
Confidence 467999999999999999998874322221 1223221111 1222222 2222221110
Q ss_pred ccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCC
Q 037045 62 ELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQL 130 (424)
Q Consensus 62 ~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l 130 (424)
..+..=++|||+++.+.. ...+ .+-....++.+|++|++..... +....+.+.++
T Consensus 99 --------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 99 --------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp --------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred --------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 013466999999998643 2222 1113445778888777665433 66666666655
No 279
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.013 Score=51.30 Aligned_cols=141 Identities=15% Similarity=0.164 Sum_probs=80.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----c
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----N 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~ 77 (424)
+-|..+|++|+|||-+|+.+++..+ -.|- .+.. .+-|-+. .++...++++.. +
T Consensus 152 knVLFyGppGTGKTm~Akalane~k--vp~l-----~vka-------t~liGeh---------VGdgar~Ihely~rA~~ 208 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAK--VPLL-----LVKA-------TELIGEH---------VGDGARRIHELYERARK 208 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccC--CceE-----Eech-------HHHHHHH---------hhhHHHHHHHHHHHHHh
Confidence 3477899999999999999999883 3221 1111 1111111 223344444433 2
Q ss_pred cCcEEEEEcCCCCcc----------h----hhhh----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHH
Q 037045 78 DRSYVLFLDGVSSEI----------N----FKEI----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQRE 134 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~----------~----~~~~----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~ 134 (424)
..+|++.+|.++-.. | ...+ .-...+.|...|-.|...+... .....++..--+.+|
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eE 288 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEE 288 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHH
Confidence 358999999987531 1 2222 1113344544554454433333 455667777778899
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
-.+++..++..-.-+ .+...+.++.+.+|+.
T Consensus 289 r~~ile~y~k~~Plp---v~~~~~~~~~~t~g~S 319 (368)
T COG1223 289 RLEILEYYAKKFPLP---VDADLRYLAAKTKGMS 319 (368)
T ss_pred HHHHHHHHHHhCCCc---cccCHHHHHHHhCCCC
Confidence 999999888654211 1223566777777764
No 280
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.88 E-value=0.0026 Score=58.75 Aligned_cols=95 Identities=13% Similarity=0.217 Sum_probs=54.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|+.|+|||.||..+++... ..--.+.++.+ .+++.++...+... +.. ..+. .+ .+-=|
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~------~~l~~~lk~~~~~~----~~~---~~l~-~l-~~~dl 220 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHF------PEFIRELKNSISDG----SVK---EKID-AV-KEAPV 220 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEH------HHHHHHHHHHHhcC----cHH---HHHH-Hh-cCCCE
Confidence 378999999999999999999984 22233455443 34555555544321 111 1222 12 23458
Q ss_pred EEEcCCCCc--chhhh--hccC----CCCCCcEEEEEecc
Q 037045 83 LFLDGVSSE--INFKE--IGMH----DDHGRGKVVFACRS 114 (424)
Q Consensus 83 lvlD~~~~~--~~~~~--~~~~----~~~~~~~iiittr~ 114 (424)
|||||+.-. ..|.. +... ....+-.+|+||..
T Consensus 221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 999998643 34433 2111 22345567777754
No 281
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.047 Score=51.10 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 79 RSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
+.-++|||+++.+.. ...+ . +-.-..++.+| +|++...+.+ +....+.+.+++.++..+.+.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--~- 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--A- 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C--C-
Confidence 455899999998743 2222 1 11223344444 5555455554 678899999999999998887641 1 1
Q ss_pred ccHHHHHHHHHHhcCCchHHH
Q 037045 151 PDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai 171 (424)
. ...++..++|.|...
T Consensus 207 -~----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAA 222 (342)
T ss_pred -h----HHHHHHHcCCCHHHH
Confidence 1 223577889999643
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.87 E-value=0.0049 Score=51.43 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHHHHhcccccccChhHH-HHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIILERLKVNAKELNNDLR-ADIISKELND 78 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~~l~~ 78 (424)
.+++|.|+.|+|||||.+.++-.. ....+.++++-.... +..+. ..+.++.-.. .+.++. .-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 378999999999999999998765 233455554422111 11111 1111221111 222222 2233344445
Q ss_pred CcEEEEEcCCCCcchhhhh-----ccC-CCCCCcEEEEEecchhhhc-ccCceEEe
Q 037045 79 RSYVLFLDGVSSEINFKEI-----GMH-DDHGRGKVVFACRSREFCW-QADGVIHV 127 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~~~~~-----~~~-~~~~~~~iiittr~~~~~~-~~~~~~~l 127 (424)
.+-++++|+.....|.... .+. ....+..||++|.+..... ..+..+.+
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6778888997654332211 111 1223667888888766443 33444444
No 283
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.86 E-value=0.0065 Score=54.89 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
+++.|.|++|+|||++|.+++.... ..-..++|++...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 4788999999999999999877652 3345688888764
No 284
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.85 E-value=0.0021 Score=55.28 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC--------ceEEEEEeccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF--------DIIFWENINTD 42 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 42 (424)
++.|.|++|+|||+++.+++........| ..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 67899999999999999999887542222 35888876555
No 285
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.85 E-value=0.0028 Score=51.32 Aligned_cols=75 Identities=21% Similarity=0.218 Sum_probs=44.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~L 82 (424)
|.|+|++|+|||+||+.+++.. .. ...-+.++...+..++....--.-+... ......... .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--------~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--------RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--------HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeecccccccccccccccc--------cceeE
Confidence 6799999999999999999988 12 2445677777777766543221100000 010000000 17899
Q ss_pred EEEcCCCCc
Q 037045 83 LFLDGVSSE 91 (424)
Q Consensus 83 lvlD~~~~~ 91 (424)
+|||++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999999853
No 286
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.85 E-value=0.0011 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.84 E-value=0.012 Score=49.93 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc--CCCHHHHHH------HHHHHhcccc------cccChhH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT--DGNIRDIQE------IILERLKVNA------KELNNDL 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~~------~~~~~~~ 67 (424)
.+++|.|+.|+|||||++.++-... ...+.++++-.. ..+...... ++++.++... ...+.++
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 3789999999999999999988652 234444443111 112222211 1344444332 1122222
Q ss_pred HH-HHHHHHhccCcEEEEEcCCCCcchhhhh-----ccC--CCCCCcEEEEEecchhhhc-ccCceEEe
Q 037045 68 RA-DIISKELNDRSYVLFLDGVSSEINFKEI-----GMH--DDHGRGKVVFACRSREFCW-QADGVIHV 127 (424)
Q Consensus 68 ~~-~~l~~~l~~~~~LlvlD~~~~~~~~~~~-----~~~--~~~~~~~iiittr~~~~~~-~~~~~~~l 127 (424)
.. -.+...+-..+-++++|+.-...|.+.. .+. ....+..+|++|....... -.+..+.+
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 21 2334444557788999997654332221 111 1122567888888766543 33444444
No 288
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.83 E-value=0.0077 Score=54.67 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCH-HHHHHHHHHHhcccc----cccCh-hHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNI-RDIQEIILERLKVNA----KELNN-DLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~----~~~~~-~~~~~~l~~~ 75 (424)
++++++|++|+||||.+.+++.... ..-..+..++....... ..-++...+..+... ...+. ......+...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 5889999999999999999998873 33345777776543221 222333344444332 11111 1112223332
Q ss_pred hccCcEEEEEcCCCCc
Q 037045 76 LNDRSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~~~~LlvlD~~~~~ 91 (424)
.....=++++|-.-..
T Consensus 151 ~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 151 KARNIDVVLIDTAGRL 166 (272)
T ss_pred HHCCCCEEEEeCCCCC
Confidence 2233448889987543
No 289
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0077 Score=56.48 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhc-c
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELN-D 78 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~-~ 78 (424)
++++++|+.|+||||++.+++.... ..-..+.+++...... ...-++...+.++.+. ...+..+....+...-. +
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 5899999999999999999998773 2224577787766533 2334445555555443 33344444333332211 2
Q ss_pred CcEEEEEcCCCC
Q 037045 79 RSYVLFLDGVSS 90 (424)
Q Consensus 79 ~~~LlvlD~~~~ 90 (424)
..=++++|-...
T Consensus 285 ~~D~VLIDTAGr 296 (407)
T PRK12726 285 CVDHILIDTVGR 296 (407)
T ss_pred CCCEEEEECCCC
Confidence 345888888755
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.0016 Score=52.65 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE 27 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~ 27 (424)
-|+|.|++|+||||+++++++....
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHh
Confidence 4789999999999999999998864
No 291
>PRK13695 putative NTPase; Provisional
Probab=96.82 E-value=0.0023 Score=54.10 Aligned_cols=24 Identities=46% Similarity=0.650 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.|+|.|.+|+|||||++.++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 292
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.80 E-value=0.0079 Score=53.53 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI 51 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 51 (424)
+++.|.|++|+|||+++.+++.... ..-..++|++... +++++.+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~--~~~~~~~~ 71 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTEN--TSKSYLKQ 71 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCC--CHHHHHHH
Confidence 4789999999999999999977652 3445688988854 34555554
No 293
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.80 E-value=0.01 Score=61.95 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
.++.++|++|+||||+|+.++... ...|- -++++...+...+...-.... ....+.....+.+ ....+-
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l--~~~~~---~i~~~~~~d~~~i~g~~~~~~-----g~~~G~~~~~l~~-~~~~~~ 418 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKAT--GRKYV---RMALGGVRDEAEIRGHRRTYI-----GSMPGKLIQKMAK-VGVKNP 418 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh--CCCEE---EEEcCCCCCHHHhccchhccC-----CCCCcHHHHHHHh-cCCCCC
Confidence 468999999999999999999877 33332 233444434332221111111 1111222222222 122445
Q ss_pred EEEEcCCCCcch------hhhh-----------------ccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHH
Q 037045 82 VLFLDGVSSEIN------FKEI-----------------GMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREA 135 (424)
Q Consensus 82 LlvlD~~~~~~~------~~~~-----------------~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~ 135 (424)
+++||+++.... .+.+ .++..-++.-+|.|+.+..+.+ ....++++.+++++|-
T Consensus 419 villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek 498 (784)
T PRK10787 419 LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEK 498 (784)
T ss_pred EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHH
Confidence 789999876421 1111 0011123344444554443333 6667899999999999
Q ss_pred HHHHHHHhc
Q 037045 136 KKLFWEVVG 144 (424)
Q Consensus 136 ~~l~~~~~~ 144 (424)
.++.+++..
T Consensus 499 ~~Ia~~~L~ 507 (784)
T PRK10787 499 LNIAKRHLL 507 (784)
T ss_pred HHHHHHhhh
Confidence 888877763
No 294
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.80 E-value=0.0059 Score=59.13 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=57.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDL------R 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~ 68 (424)
-++|.|.+|+|||||+.+++.... +.+-+.++++-++. .....++.+.+...-.... ...+... .
T Consensus 145 R~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 145 KTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 479999999999999999998885 23567788887766 4566677777765422111 1111111 1
Q ss_pred HHHHHHHh---ccCcEEEEEcCCCC
Q 037045 69 ADIISKEL---NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 ~~~l~~~l---~~~~~LlvlD~~~~ 90 (424)
.-.+.+++ .++++|+++|++-.
T Consensus 224 a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccchH
Confidence 22334444 26899999999855
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.79 E-value=0.001 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.774 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|.|+|++|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 296
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.79 E-value=0.0057 Score=58.70 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN 40 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 40 (424)
.+|.++|+.|+||||++.+++.....+ . ..+..++..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G-~kV~lV~~D 137 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-G-FKPCLVCAD 137 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-C-CCEEEEcCc
Confidence 589999999999999999999877422 2 245555543
No 297
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.78 E-value=0.0074 Score=53.02 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
+|+|.|++|+||||+|+.++........-..+..+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5899999999999999999998742111123555555443
No 298
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0052 Score=49.74 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA 60 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 60 (424)
+|.|-|++|+||||+|+.+++... -. ++ +.-.+++++++.++.+-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~-----~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LK-----LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cc-----ee------eccHHHHHHHHHcCCCH
Confidence 689999999999999999999882 21 11 33357888888887664
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=96.76 E-value=0.007 Score=58.39 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~ 41 (424)
.+|.++|+.|+||||.+.+++.... .. -..+..|++..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~ 139 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADV 139 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccc
Confidence 4789999999999999999988773 22 23355555443
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.75 E-value=0.0071 Score=58.49 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccccc-cChhHHHHHHH---HHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNAKE-LNNDLRADIIS---KEL 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~---~~l 76 (424)
.+|.++|+.|+||||.+.+++..... ..+ .+..+++.... ...+.++.+..+++.+... ....+....+. +.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 47899999999999999999988852 222 45555554432 2334455566666544311 11112222222 222
Q ss_pred ccCcEEEEEcCCCC
Q 037045 77 NDRSYVLFLDGVSS 90 (424)
Q Consensus 77 ~~~~~LlvlD~~~~ 90 (424)
.+. -++|+|..-.
T Consensus 174 ~~~-DvVIIDTAGr 186 (437)
T PRK00771 174 KKA-DVIIVDTAGR 186 (437)
T ss_pred hcC-CEEEEECCCc
Confidence 233 4688887643
No 301
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.75 E-value=0.0055 Score=58.70 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR----- 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 68 (424)
..++|.|+.|+|||||++.++... ..+.++..-++.. .+..++.++++..-+... ...+....
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 368999999999999999998644 2356666666664 455667776655422221 11111111
Q ss_pred -HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 -ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 -~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
.-.+.+++ +++++|+++|++-..
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 11233444 468999999998653
No 302
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.74 E-value=0.0049 Score=58.47 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN---- 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---- 77 (424)
+++.|.|.+|+|||.||-.++.+...........+++.+... ...+.+.+................ ..+.+...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l-~~~l~~~l~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 79 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL-RNKLREQLAKKYNPKLKKSDFRKP-TSFINNYSESDK 79 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH-HHHHHHHHhhhcccchhhhhhhhh-HHHHhhcccccc
Confidence 578999999999999999999988323445556676666552 223333333332111111111111 11222221
Q ss_pred -cCcE-EEEEcCCCCcch
Q 037045 78 -DRSY-VLFLDGVSSEIN 93 (424)
Q Consensus 78 -~~~~-LlvlD~~~~~~~ 93 (424)
..++ ++|+|+++....
T Consensus 80 ~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCcCCEEEEehhHhhhh
Confidence 2334 999999887644
No 303
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.74 E-value=0.01 Score=50.04 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc---C---CCC--ceEEEEEeccCCCHHHHHHHHHHHhcccc-------cccCh-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE---S---RRF--DIIFWENINTDGNIRDIQEIILERLKVNA-------KELNN- 65 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~---~---~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~- 65 (424)
.+++|.|+.|+|||||.+.+..+... . ..+ ..+.|+. + .+.+..++... ...+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 47899999999999999988632110 0 011 1133321 1 34555555432 11111
Q ss_pred -hHHHHHHHHHhccC--cEEEEEcCCCCcchhhhh-----ccC-CCCCCcEEEEEecchhhhcccCceEEec
Q 037045 66 -DLRADIISKELNDR--SYVLFLDGVSSEINFKEI-----GMH-DDHGRGKVVFACRSREFCWQADGVIHVQ 128 (424)
Q Consensus 66 -~~~~~~l~~~l~~~--~~LlvlD~~~~~~~~~~~-----~~~-~~~~~~~iiittr~~~~~~~~~~~~~l~ 128 (424)
.+.....+ .+-.. .=++++|+.-...+.... .+. ....+..||++|.+.......+..+.++
T Consensus 92 q~qrl~lar-al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~ 162 (176)
T cd03238 92 ELQRVKLAS-ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFG 162 (176)
T ss_pred HHHHHHHHH-HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEC
Confidence 22223333 33345 668888997654332211 011 1224667888888876554444455543
No 304
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0041 Score=53.52 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|.+|+||||+|+.+++...
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999994
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.72 E-value=0.0077 Score=58.10 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
.++.+.|+.|+||||.+.+++.....+. -..+.-+++..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~ 138 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDL 138 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 4789999999999999999998863112 22355555544
No 306
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.72 E-value=0.0081 Score=57.01 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++.. -+..++... ...+.++ +.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~----I~~~ 153 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLED----ILAS 153 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHH----HHHH
Confidence 4788999999999999999998773 3335688887543 3333322 234444322 1222222 2223
Q ss_pred hc-cCcEEEEEcCCCCc
Q 037045 76 LN-DRSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~-~~~~LlvlD~~~~~ 91 (424)
+. .+.-++|+|.++..
T Consensus 154 i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 154 IEELKPDLVIIDSIQTV 170 (372)
T ss_pred HHhcCCcEEEEcchHHh
Confidence 32 34568888887554
No 307
>PTZ00301 uridine kinase; Provisional
Probab=96.72 E-value=0.0014 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||||+.+.+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 489999999999999999998776
No 308
>PRK04328 hypothetical protein; Provisional
Probab=96.72 E-value=0.0071 Score=54.29 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
+++.|.|++|+|||+|+.+++... -..-..++|++...
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee 61 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEE 61 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeC
Confidence 468899999999999999988775 23346688888655
No 309
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.70 E-value=0.012 Score=55.25 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 79 (424)
++|+++||.|+||||-..+++.++.-...-..+..|+...+. ....-++.-+.-++.+. ...+..+....+ ..+++.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai-~~l~~~ 282 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI-EALRDC 282 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH-HHhhcC
Confidence 689999999999999888888877312333457777776654 33344455556666665 333333333333 233344
Q ss_pred cEEEEEcCCC
Q 037045 80 SYVLFLDGVS 89 (424)
Q Consensus 80 ~~LlvlD~~~ 89 (424)
+ ++.+|-+.
T Consensus 283 d-~ILVDTaG 291 (407)
T COG1419 283 D-VILVDTAG 291 (407)
T ss_pred C-EEEEeCCC
Confidence 3 34456554
No 310
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.68 E-value=0.0015 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999877
No 311
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.68 E-value=0.0095 Score=57.58 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=56.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDL------R 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~ 68 (424)
-++|.|.+|+|||||+.+++..... ++-+.++++-++.. ....++.+++...-.... ...+... .
T Consensus 146 R~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 146 KIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 4789999999999999999887742 22356777777664 456677777765422211 1111111 1
Q ss_pred HHHHHHHh---ccCcEEEEEcCCCCc
Q 037045 69 ADIISKEL---NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l---~~~~~LlvlD~~~~~ 91 (424)
.-.+.+.+ +++++||++|++...
T Consensus 225 a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecchHHH
Confidence 22344555 468999999998653
No 312
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.013 Score=56.23 Aligned_cols=59 Identities=22% Similarity=0.145 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA 60 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 60 (424)
.+++++|+.|+||||++.+++...........+..+..... ....+-+....+.++.+.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 47999999999999999999876532222333444443332 122233444445544443
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.0097 Score=57.62 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 79 (424)
+++++.|++|+||||++.+++........-..+..++...... ...-++.-...++.+. ...+..+....+.+ +. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~-~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR-D 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-C
Confidence 4789999999999999999988773112234567777655421 1122223333344333 22233333443432 22 2
Q ss_pred cEEEEEcCCC
Q 037045 80 SYVLFLDGVS 89 (424)
Q Consensus 80 ~~LlvlD~~~ 89 (424)
.=++++|...
T Consensus 300 ~DlVlIDt~G 309 (424)
T PRK05703 300 CDVILIDTAG 309 (424)
T ss_pred CCEEEEeCCC
Confidence 4578889653
No 314
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.67 E-value=0.0044 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|.+|+||||+|+.++....
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999874
No 315
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.66 E-value=0.097 Score=48.57 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=36.5
Q ss_pred eEEecCCCHHHHHHHHHHHhcccCCCC-ccHHHHHHHHHHhcCCchHHH
Q 037045 124 VIHVQQLCQREAKKLFWEVVGVHLKKY-PDIELVADSIVKECGGMPYML 171 (424)
Q Consensus 124 ~~~l~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~I~~~~~g~Plai 171 (424)
.+++++++++|+..++..+........ ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998887662222 444556677777789999654
No 316
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.66 E-value=0.0071 Score=52.62 Aligned_cols=84 Identities=20% Similarity=0.388 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHH--hcccc-----cccChhHH------
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILER--LKVNA-----KELNNDLR------ 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~-----~~~~~~~~------ 68 (424)
-++|.|.+|+|||+|+.++++.. .-+.++++-++.. .+..++.+++... +.... ...+....
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 47899999999999999999987 2445588888764 5677777777544 11111 11111111
Q ss_pred HHHHHHHh--ccCcEEEEEcCCCC
Q 037045 69 ADIISKEL--NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 ~~~l~~~l--~~~~~LlvlD~~~~ 90 (424)
.-.+-+.+ +++++|+++||+..
T Consensus 93 a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 93 ALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHTTSEEEEEEETHHH
T ss_pred chhhhHHHhhcCCceeehhhhhHH
Confidence 11222333 57899999999754
No 317
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.65 E-value=0.0019 Score=56.98 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|.|++|+||||+|+.+++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999987
No 318
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.64 E-value=0.0099 Score=49.75 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=47.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc--Cc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND--RS 80 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--~~ 80 (424)
++.|.|.+|+|||++|.+++... ...++|+.-....+. ++.+.|..............+....+.+.+.. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 46899999999999999998752 235677766665543 34444444322223222222223344444422 23
Q ss_pred EEEEEcCCC
Q 037045 81 YVLFLDGVS 89 (424)
Q Consensus 81 ~LlvlD~~~ 89 (424)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 379999864
No 319
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.63 E-value=0.076 Score=59.28 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
=|.++|++|+|||.||+.++.+..
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcC
Confidence 367999999999999999999884
No 320
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.63 E-value=0.012 Score=62.35 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC--CceEEEEEeccCCCHH------HHHHHHHHHhcccccccChhHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR--FDIIFWENINTDGNIR------DIQEIILERLKVNAKELNNDLRADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~------~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 74 (424)
-+.|.|.+|+||||+...++.....+.. -+..+++.+....... .+..-+...+..+. ...+......+
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~---~~~~~~~~~~e 300 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG---IAKQLIEAHQE 300 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC---CcchhhHHHHH
Confidence 3689999999999999999988753221 2345555544211111 22222222222222 11122222256
Q ss_pred HhccCcEEEEEcCCCCcch------hhhh-ccCCCCCCcEEEEEecchhhhc--ccCceEEecCCCHHHHHHHHH-----
Q 037045 75 ELNDRSYVLFLDGVSSEIN------FKEI-GMHDDHGRGKVVFACRSREFCW--QADGVIHVQQLCQREAKKLFW----- 140 (424)
Q Consensus 75 ~l~~~~~LlvlD~~~~~~~------~~~~-~~~~~~~~~~iiittr~~~~~~--~~~~~~~l~~l~~~~~~~l~~----- 140 (424)
.++..++++.+|++++... ...+ .+.+..+.+++|+|+|...... .....+++..+.++.-..+..
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~ 380 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD 380 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence 7788999999999988642 2222 2336777999999998777666 556667777777666554433
Q ss_pred HHhccc-CCCCcc---H-HH---HHHHHHHhcCCchHHHHHHHHHHhCC-----cchHHHHHHHHHhhh
Q 037045 141 EVVGVH-LKKYPD---I-EL---VADSIVKECGGMPYMLKLIGKELANQ-----SEVAIWRATADELRL 196 (424)
Q Consensus 141 ~~~~~~-~~~~~~---~-~~---~~~~I~~~~~g~Plai~~~a~~l~~~-----~~~~~~~~~~~~l~~ 196 (424)
...... ...... . .. ....-.+.....|+.|.+.+-.-... ...+.++..++.+..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 111111 101111 0 00 01122233478899999988554421 345566666655544
No 321
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.017 Score=49.87 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=32.4
Q ss_pred HHHHhccCcEEEEEcCCCCcchhhhhccC------CCCCCcEEEEEecchhhhc
Q 037045 72 ISKELNDRSYVLFLDGVSSEINFKEIGMH------DDHGRGKVVFACRSREFCW 119 (424)
Q Consensus 72 l~~~l~~~~~LlvlD~~~~~~~~~~~~~~------~~~~~~~iiittr~~~~~~ 119 (424)
+.+.+--++-+.|||..++..|++.+... -...++-+++.|....+..
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~ 208 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD 208 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh
Confidence 33334447889999999998887777221 3345667777777777665
No 322
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.011 Score=57.59 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhccccc-ccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNAK-ELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~~ 79 (424)
+|++++|+.|+||||++.+++.....+.....+..+..... ....+-++...+.++.... ..+..+....+ ..++++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccCC
Confidence 48999999999999999999987732222224555554442 2223334444454444331 11222222222 233333
Q ss_pred cEEEEEcCCC
Q 037045 80 SYVLFLDGVS 89 (424)
Q Consensus 80 ~~LlvlD~~~ 89 (424)
-.+++|...
T Consensus 336 -d~VLIDTaG 344 (484)
T PRK06995 336 -HIVLIDTIG 344 (484)
T ss_pred -CeEEeCCCC
Confidence 477788765
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.0072 Score=57.47 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC--CCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES--RRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELN 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~ 77 (424)
++|.++|+.|+||||.+.+++...... .+-..+..+++..... ...-++...+.++.+. ...+.++....+.+ +
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-~- 252 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-S- 252 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-h-
Confidence 579999999999999999999877422 1223466666665432 2223555566566544 22333333333333 2
Q ss_pred cCcEEEEEcCCCCc
Q 037045 78 DRSYVLFLDGVSSE 91 (424)
Q Consensus 78 ~~~~LlvlD~~~~~ 91 (424)
...-++++|.+...
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 33458899987543
No 324
>PRK06762 hypothetical protein; Provisional
Probab=96.62 E-value=0.0019 Score=54.04 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+|+.+++..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 325
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.62 E-value=0.018 Score=51.07 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
.++.|.|++|+|||+++.+++.... ..-..++|++...
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~ 58 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEE 58 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 4689999999999999999876542 2345688888643
No 326
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.61 E-value=0.0073 Score=58.14 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhH------HH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDL------RA 69 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~------~~ 69 (424)
..++|.|++|+|||||++.++.... ...++++..--...++..+.+..+....... ...+... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3689999999999999998887542 2224455443344555555554444331111 1111111 11
Q ss_pred HHHHHHh--ccCcEEEEEcCCCCc
Q 037045 70 DIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 70 ~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
-.+.+++ +++++|+++|++-..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 2233333 368999999998653
No 327
>PRK04040 adenylate kinase; Provisional
Probab=96.61 E-value=0.002 Score=55.11 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.+|+|+|++|+||||+++.+++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999987
No 328
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.60 E-value=0.056 Score=49.37 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHH-HHHHHHHHHhcccc-----cccChhHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIR-DIQEIILERLKVNA-----KELNNDLRADIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l 76 (424)
-+.|.||.|+|||+|......+. +..-+..+-|........+ -.++.|..++..+- ...+..+....+-+.|
T Consensus 51 sviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 51 SVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred ceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 46799999999999999998884 3333444555555543322 24455555554332 3444455555555555
Q ss_pred cc------CcEEEEEcCCCCcch-------hhhhccC--CCCCCcEEEEEecchhhhc--------ccCc-eEEecCCCH
Q 037045 77 ND------RSYVLFLDGVSSEIN-------FKEIGMH--DDHGRGKVVFACRSREFCW--------QADG-VIHVQQLCQ 132 (424)
Q Consensus 77 ~~------~~~LlvlD~~~~~~~-------~~~~~~~--~~~~~~~iiittr~~~~~~--------~~~~-~~~l~~l~~ 132 (424)
+. .++++|+|+++.... ..-+.+. ...+=|-|-+|||...... .... ++-++.+.-
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l 208 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPL 208 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCCh
Confidence 42 368999999876421 1111222 2333445568888644433 2333 444455666
Q ss_pred HHHHHHHHHHh
Q 037045 133 REAKKLFWEVV 143 (424)
Q Consensus 133 ~~~~~l~~~~~ 143 (424)
++-++++++..
T Consensus 209 ~~yv~l~r~ll 219 (408)
T KOG2228|consen 209 GDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 329
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.024 Score=53.12 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=63.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCC---HHHHHHHHHHHhccccc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGN---IRDIQEIILERLKVNAK 61 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~ 61 (424)
+.++|++|+||||+|..+++...-.. ....+..+.-+.... ..+..+++.........
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~ 106 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL 106 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC
Confidence 67899999999999999999874211 112233444333322 23333333333221110
Q ss_pred ccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCH
Q 037045 62 ELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQ 132 (424)
Q Consensus 62 ~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~ 132 (424)
.++.-++|+|+++.... -..+ .+-.....+.+|++|.. ..+.+ +....+++.+.+.
T Consensus 107 ---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 107 ---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred ---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchH
Confidence 24567999999998643 2222 11234456667766663 33333 6677777776333
No 330
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0048 Score=52.47 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE 54 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 54 (424)
.+|+|-|+-|+||||||+.+++... + .+++-.+..+.-++.+.++..+
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~----~-~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG----F-KVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC----C-ceeeecccCChHHHHHHHhHHH
Confidence 4899999999999999999999883 2 2344445555445555554433
No 331
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.1 Score=47.91 Aligned_cols=149 Identities=8% Similarity=0.021 Sum_probs=84.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh--------ccCCCCceEEEEEe-ccCCCHHHHHHHHHHHhcccccccChhHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI--------GESRRFDIIFWENI-NTDGNIRDIQEIILERLKVNAKELNNDLRADIIS 73 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 73 (424)
+..++|..|+||+++|..+++.. ....+.+-+.+++. +.....+++. ++.+.+....
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~------------- 85 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS------------- 85 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-------------
Confidence 45689999999999999999886 11223323444432 2223333332 2333222110
Q ss_pred HHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045 74 KELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGV 145 (424)
Q Consensus 74 ~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~ 145 (424)
.-.+.+=++|+|+++.... ...+ .+-....++.+|+ |++...+.+ +....+++.++++++..+.+... +
T Consensus 86 -~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~- 162 (299)
T PRK07132 86 -FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N- 162 (299)
T ss_pred -cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-
Confidence 0014667889999887643 2222 1112334455555 444444443 77889999999999988777653 1
Q ss_pred cCCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045 146 HLKKYPDIELVADSIVKECGGMPYMLKLI 174 (424)
Q Consensus 146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~ 174 (424)
..++.++.++...+|.-.|+..+
T Consensus 163 ------~~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 163 ------KEKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred ------CChhHHHHHHHHcCCHHHHHHHH
Confidence 11234666777777644555553
No 332
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.039 Score=49.38 Aligned_cols=144 Identities=15% Similarity=0.204 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~ 80 (424)
+-|.++|++|+||+.||+.|+... ... |++++... +. -..++.+ +.+.+.+.+.-+ .++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA--nST-----FFSvSSSD----Lv---SKWmGES------EkLVknLFemARe~kP 226 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA--NST-----FFSVSSSD----LV---SKWMGES------EKLVKNLFEMARENKP 226 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc--CCc-----eEEeehHH----HH---HHHhccH------HHHHHHHHHHHHhcCC
Confidence 568899999999999999999987 332 33444431 11 1112211 222333333333 478
Q ss_pred EEEEEcCCCCc--------c-hh----hhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHH-
Q 037045 81 YVLFLDGVSSE--------I-NF----KEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAK- 136 (424)
Q Consensus 81 ~LlvlD~~~~~--------~-~~----~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~- 136 (424)
-+|.+|.++.. + .. .++ +.-....|.-|+=.|.-.-+.. .....|.+ +|.+..|.
T Consensus 227 SIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~ 305 (439)
T KOG0739|consen 227 SIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARA 305 (439)
T ss_pred cEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhh
Confidence 89999998753 0 11 111 1123333333443443221111 22333333 45555555
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.+|+-.++.. +....+...+++.+...|+.
T Consensus 306 ~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 306 RMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred hhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 4454455443 34444556777888877764
No 333
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.58 E-value=0.0071 Score=58.27 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=57.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhH------H
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDL------R 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~------~ 68 (424)
-++|.|.+|+|||+|+.++..... +.+-+.++|+-++.. ....++.+++...=... . ...+... .
T Consensus 140 r~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 140 KAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999999988863 233477888888764 45666777765532111 1 1111111 1
Q ss_pred HHHHHHHhc---cCcEEEEEcCCCCc
Q 037045 69 ADIISKELN---DRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l~---~~~~LlvlD~~~~~ 91 (424)
.-.+.+.++ ++++|+++|++...
T Consensus 219 a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecChHHH
Confidence 224445554 47999999998653
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.57 E-value=0.009 Score=48.69 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHH-HHHHHHHhccCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLR-ADIISKELNDRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~~l~~~~ 80 (424)
.+++|.|+.|.|||||++.++...+ ...+.+|++-.. .++.- ...+..+. .-.+...+-.++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 3789999999999999999988663 234444443110 00000 00111111 122333444566
Q ss_pred EEEEEcCCCCcchhhhh-----ccCCCCCCcEEEEEecchhhhc
Q 037045 81 YVLFLDGVSSEINFKEI-----GMHDDHGRGKVVFACRSREFCW 119 (424)
Q Consensus 81 ~LlvlD~~~~~~~~~~~-----~~~~~~~~~~iiittr~~~~~~ 119 (424)
-++++|+.....|.... .+... +..||++|.......
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 78889997654332211 01111 356788887765543
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.56 E-value=0.0022 Score=54.86 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++|+|.|++|+||||+++.+++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.55 E-value=0.019 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|.|||||++.++-..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
No 337
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.54 E-value=0.0096 Score=57.36 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=56.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDL------R 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~ 68 (424)
-++|.|.+|+|||||+.+++.... .++-+.++++-++.. ....++.+++...=.... ...+... .
T Consensus 145 r~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~ 223 (461)
T TIGR01039 145 KIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223 (461)
T ss_pred EEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 478999999999999999988764 223356788877664 556777777754321111 1111111 1
Q ss_pred HHHHHHHhc---cCcEEEEEcCCCCc
Q 037045 69 ADIISKELN---DRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l~---~~~~LlvlD~~~~~ 91 (424)
.-.+.++++ ++++|+++|++-..
T Consensus 224 a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecchhHH
Confidence 224455553 57999999998653
No 338
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.53 E-value=0.02 Score=59.47 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=44.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc-Cc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-RS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~ 80 (424)
..+.++|++|+|||.+|+.++... .. ..+.++++...+.. .+..-++.+......++ ...+.+.++. ..
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~----~~~~LiG~~~gyvg~~~-~g~L~~~v~~~p~ 558 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH----TVSRLIGAPPGYVGFDQ-GGLLTDAVIKHPH 558 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----cHHHHcCCCCCcccccc-cchHHHHHHhCCC
Confidence 357889999999999999999887 22 23455655443211 12222232221111111 1123333333 45
Q ss_pred EEEEEcCCCCc
Q 037045 81 YVLFLDGVSSE 91 (424)
Q Consensus 81 ~LlvlD~~~~~ 91 (424)
.+++||+++..
T Consensus 559 sVlllDEieka 569 (758)
T PRK11034 559 AVLLLDEIEKA 569 (758)
T ss_pred cEEEeccHhhh
Confidence 69999999875
No 339
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.53 E-value=0.0023 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+|||||++.++...
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999987
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0093 Score=56.83 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNAKELNNDLRADIISKELNDR- 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~- 79 (424)
.++++.|++|+||||++.+++........ ..+..++...... ..+.++..+..++.+.. ...+ ...+.+.+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--~~~~-~~~l~~~l~~~~ 299 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--PVKD-IKKFKETLARDG 299 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCee--ehHH-HHHHHHHHHhCC
Confidence 47899999999999999999976521222 2344455443222 22333333444444321 1111 22333333323
Q ss_pred cEEEEEcC
Q 037045 80 SYVLFLDG 87 (424)
Q Consensus 80 ~~LlvlD~ 87 (424)
.=++++|-
T Consensus 300 ~D~VLIDT 307 (432)
T PRK12724 300 SELILIDT 307 (432)
T ss_pred CCEEEEeC
Confidence 33688994
No 341
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.52 E-value=0.0056 Score=52.79 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=50.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----- 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----- 76 (424)
+++.|.|++|+||||+++.+.+...... ..++++. ........ +....+... ......+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT~~Aa~~----L~~~~~~~a-----~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PTNKAAKE----LREKTGIEA-----QTIHSFLYRIPNGDDE 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SSHHHHHH----HHHHHTS-E-----EEHHHHTTEECCEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-CcHHHHHH----HHHhhCcch-----hhHHHHHhcCCccccc
Confidence 4788999999999999999988875322 2334433 22222222 333322111 00000000000
Q ss_pred ----ccCcEEEEEcCCCCcc--hhhhhccCCCCCCcEEEEEecchhh
Q 037045 77 ----NDRSYVLFLDGVSSEI--NFKEIGMHDDHGRGKVVFACRSREF 117 (424)
Q Consensus 77 ----~~~~~LlvlD~~~~~~--~~~~~~~~~~~~~~~iiittr~~~~ 117 (424)
..+.-++|+|++.... ++..+.......++++|+.--....
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchh
Confidence 1234599999987654 4444411133367788876544443
No 342
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.51 E-value=0.016 Score=55.79 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhHH-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDLR----- 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 68 (424)
..++|.|..|+|||||+++++.... .+.+++.-++. .....++.++.+..-+... ...+....
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999998662 34555666655 3455566655544322111 11111111
Q ss_pred -HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 -ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 -~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
.-.+.+++ +++++|+++|++...
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 12233444 468999999998653
No 343
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.51 E-value=0.021 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++-..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999998865
No 344
>PRK06547 hypothetical protein; Provisional
Probab=96.51 E-value=0.0026 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+++..
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999875
No 345
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.51 E-value=0.0039 Score=53.17 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN 40 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 40 (424)
|++.|.|++|+|||||++++++.. ...|..++..+-.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~--~~~~~~~v~~TTR 39 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEF--PDKFGRVVSHTTR 39 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHS--TTTEEEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc--ccccccceeeccc
Confidence 689999999999999999999988 5777655555443
No 346
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.49 E-value=0.019 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
..|+|+|.+|+|||||++-+..-..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3699999999999999999987663
No 347
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.49 E-value=0.0066 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+|.+.|.+|+||||+|+.+++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 348
>PRK08149 ATP synthase SpaL; Validated
Probab=96.49 E-value=0.013 Score=56.30 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChh------H
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNND------L 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~------~ 67 (424)
..++|.|++|+|||||++.++... ..+.++...++. ..+...+.++......... ...+.. .
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 368999999999999999998754 234444444444 3456666666665433221 111111 1
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 68 RADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
....+.+.+ +++++||++|++...
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHHH
Confidence 122333334 468999999998653
No 349
>PRK06696 uridine kinase; Validated
Probab=96.49 E-value=0.0024 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|.+|+||||+|+.+++...
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999883
No 350
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.018 Score=53.93 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
++|.|-|.+|+|||||.-+++.+.. .+- .++||+--. ++.++. --+..++.+. .+.+.++....+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEE--S~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEE--SLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCc--CHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 4788999999999999999999984 233 788876433 333322 2244454322 44555544444443
Q ss_pred hccCcEEEEEcCCCCc
Q 037045 76 LNDRSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~~~~LlvlD~~~~~ 91 (424)
.+.-++|+|-++..
T Consensus 167 --~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 --EKPDLVVIDSIQTL 180 (456)
T ss_pred --cCCCEEEEecccee
Confidence 56789999998875
No 351
>PRK05973 replicative DNA helicase; Provisional
Probab=96.48 E-value=0.019 Score=50.74 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI 51 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 51 (424)
.++.|.|.+|+|||+++.+++.... ..-..++|++.... ..++...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHH
Confidence 3688999999999999999988763 23345777765543 3444443
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.48 E-value=0.013 Score=57.17 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=49.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++... ...+.++ +.+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~----i~~~ 151 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEA----ILAT 151 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHH----HHHH
Confidence 4788999999999999999998773 2334578887543 33343322 44444322 1222232 3333
Q ss_pred hc-cCcEEEEEcCCCCc
Q 037045 76 LN-DRSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~-~~~~LlvlD~~~~~ 91 (424)
++ .+.-++|+|.+...
T Consensus 152 i~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 152 IEEEKPDLVVIDSIQTM 168 (446)
T ss_pred HHhhCCCEEEEechhhh
Confidence 32 24558999987643
No 353
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0018 Score=56.67 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=66.6
Q ss_pred ccCCCcEEEccCCCCCcCChhhhcccccceeeeccccc--cc-ccCChhhhccCCCCEEEecCCcCc---ccchhhhcCC
Q 037045 307 YMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCS--LL-LQLPAEIGRLQKLEILDVSHTKVQ---CLPSEIGQLI 380 (424)
Q Consensus 307 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~--~~-~~lp~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~ 380 (424)
.+..|+.+++.+..+..+ .++-.|++|++|.+ +.| ++ ..++-..-.+|+|+++++++|+++ +++ .+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~l--sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLEL--SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcc--cCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 455667777777665333 22445788999998 555 33 356656667799999999999866 443 367777
Q ss_pred CCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 381 ELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 381 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
+|..|++..|..+.. ....-+.+.-|++|++|+
T Consensus 117 nL~~Ldl~n~~~~~l---------~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNL---------DDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCcccc---------ccHHHHHHHHhhhhcccc
Confidence 888888888864321 222333455677777765
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=96.46 E-value=0.0072 Score=43.05 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++.|.|++|+|||+++.+.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999995555555444
No 355
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.45 E-value=0.0042 Score=50.23 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++|.|+|..|+|||||++.+++... ...+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 5899999999999999999999985 34555555555444
No 356
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.44 E-value=0.0028 Score=55.27 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+|||||++.++....
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998763
No 357
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.44 E-value=0.017 Score=51.63 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE 54 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 54 (424)
.++.|.|++|+|||+++.+++..... .+-..++|+++.. +...+.+.+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHH
Confidence 37889999999999999998887642 2134577777554 44555555543
No 358
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.43 E-value=0.0089 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|.|++|+||||+|+.+++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999866
No 359
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.43 E-value=0.026 Score=50.21 Aligned_cols=127 Identities=21% Similarity=0.302 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----------------CC-ceEEEEE----------------eccC------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----------------RF-DIIFWEN----------------INTD------ 42 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----------------~f-~~~~wv~----------------~~~~------ 42 (424)
.+++|.|+.|+|||||.+.++.-.+... .+ ..+.|+. .++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 4789999999999999999987553100 00 0122221 1111
Q ss_pred ----CCHHHHHHHHHHHhcccc------cccChhHHHH-HHHHHhccCcEEEEEcCCCCcchhhhh----cc-C--CCCC
Q 037045 43 ----GNIRDIQEIILERLKVNA------KELNNDLRAD-IISKELNDRSYVLFLDGVSSEINFKEI----GM-H--DDHG 104 (424)
Q Consensus 43 ----~~~~~~~~~i~~~l~~~~------~~~~~~~~~~-~l~~~l~~~~~LlvlD~~~~~~~~~~~----~~-~--~~~~ 104 (424)
....+...+.++.++... ...+-++.+. .+...+-++.=++.+|+--+..|+... .+ . ....
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~ 188 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence 112224555566665544 3333344433 445566677788899996655432222 11 1 3355
Q ss_pred CcEEEEEecchhhhc-ccCceEEec
Q 037045 105 RGKVVFACRSREFCW-QADGVIHVQ 128 (424)
Q Consensus 105 ~~~iiittr~~~~~~-~~~~~~~l~ 128 (424)
+..||+++.+-+.+. -.++.+-|+
T Consensus 189 ~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 189 GLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 677888888877766 333333333
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=96.43 E-value=0.015 Score=54.23 Aligned_cols=88 Identities=23% Similarity=0.181 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-c---ccChhHH-HHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-K---ELNNDLR-ADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-~---~~~~~~~-~~~l~~~ 75 (424)
.+|++.|+.|+||||++.+++..... ..+ .+..+..... .....-++.....++... . ..+.... ...+...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987742 223 3444554332 122234455566666443 1 1111111 1222221
Q ss_pred hccCcEEEEEcCCCCc
Q 037045 76 LNDRSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~~~~LlvlD~~~~~ 91 (424)
.....-++++|.+...
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 1122239999998654
No 361
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00024 Score=62.41 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=67.0
Q ss_pred cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCCh--hhhccCCC
Q 037045 282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA--EIGRLQKL 359 (424)
Q Consensus 282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~--~~~~l~~L 359 (424)
..+.+.+.|++-++.++++.- ...|+.|++|.++-|+++.+.+ +..+.+|+.|.+ ..|.+.++-+ -+.++++|
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYL--RkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYL--RKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh-HHHHHHHHHHHH--HhcccccHHHHHHHhcCchh
Confidence 346677778888888776654 4568888888888888877633 667777777777 6777766643 45677777
Q ss_pred CEEEecCCcCc-ccchh-----hhcCCCCCEee
Q 037045 360 EILDVSHTKVQ-CLPSE-----IGQLIELKYLR 386 (424)
Q Consensus 360 ~~L~l~~~~i~-~lp~~-----i~~l~~L~~l~ 386 (424)
+.|.+.-|+.. .-+.. +..+++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766633 22221 34566666665
No 362
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00019 Score=63.09 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=72.6
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh--hhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--SISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~~~l~~L~~l~l~ 340 (424)
.+++.|++.|+.+..+.-+..++.|++|.|+.|+++.+.+ +..++.|+.|.+..|.+.++.. -+.++++|+.|++
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL- 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL- 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh-
Confidence 5677888888888888777888889999999999988776 6678889999999998866643 2577888888888
Q ss_pred ccccc-cccCCh-----hhhccCCCCEEE
Q 037045 341 SSCSL-LLQLPA-----EIGRLQKLEILD 363 (424)
Q Consensus 341 ~~~~~-~~~lp~-----~~~~l~~L~~L~ 363 (424)
..|. .+.-+. -+..+|+|+.||
T Consensus 96 -~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 -DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -ccCCcccccchhHHHHHHHHcccchhcc
Confidence 4443 333332 234577888776
No 363
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.41 E-value=0.0028 Score=65.90 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
++++|+|+.|.||||+.+.+.-.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 47899999999999999998765
No 364
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.41 E-value=0.04 Score=45.92 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=61.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc---CCCHHHHHHHHHHHhcccc-------cccC-------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT---DGNIRDIQEIILERLKVNA-------KELN------- 64 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~-------~~~~------- 64 (424)
..|-|++..|.||||.|-.++-+.. .+--.++.+.+-+ ...-...++.+ .+.... ...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 4678899999999999999998884 3333343333322 22333344332 111110 0111
Q ss_pred hhHHHHHHHHHhccCcE-EEEEcCCCCcc-----hhhhh--ccCCCCCCcEEEEEecchhh
Q 037045 65 NDLRADIISKELNDRSY-VLFLDGVSSEI-----NFKEI--GMHDDHGRGKVVFACRSREF 117 (424)
Q Consensus 65 ~~~~~~~l~~~l~~~~~-LlvlD~~~~~~-----~~~~~--~~~~~~~~~~iiittr~~~~ 117 (424)
..+..+..++.+...+| ++|||.+-... +.+++ .+...-.+..+|+|-|+..-
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 12223444555556666 99999975321 22222 12234455689999997643
No 365
>PRK05922 type III secretion system ATPase; Validated
Probab=96.40 E-value=0.015 Score=55.80 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=50.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-----cccC--hhH------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-----KELN--NDL------ 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~--~~~------ 67 (424)
..++|.|+.|+|||||.+.++... ..+...+..++. ..+..+++.+......... ...+ ...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 358999999999999999999755 224344444444 3445556655554433222 1111 111
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 68 RADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
..-.+.+++ +++++|+++|++-..
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112233444 368999999998654
No 366
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.40 E-value=0.019 Score=56.15 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... +..++... ...+.+ .+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~----~I~~~ 165 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWE----QICAN 165 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHH----HHHHH
Confidence 4789999999999999999988763 2224588887543 33333322 23333322 222333 33333
Q ss_pred hcc-CcEEEEEcCCCCc
Q 037045 76 LND-RSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~~ 91 (424)
+.. +.-++|+|.++..
T Consensus 166 i~~~~~~~vVIDSIq~l 182 (454)
T TIGR00416 166 IEEENPQACVIDSIQTL 182 (454)
T ss_pred HHhcCCcEEEEecchhh
Confidence 333 4558999987653
No 367
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.40 E-value=0.056 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
++.|+|++|.||||+.+.+|...+
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc
Confidence 678999999999999999998774
No 368
>PRK14532 adenylate kinase; Provisional
Probab=96.39 E-value=0.014 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|.|++|+||||+|+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999876
No 369
>PRK03839 putative kinase; Provisional
Probab=96.39 E-value=0.0031 Score=53.58 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 370
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.00031 Score=62.38 Aligned_cols=150 Identities=20% Similarity=0.197 Sum_probs=109.3
Q ss_pred ccceeEEEeeccCCCC--CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-CCcCC--hhhhcccccc
Q 037045 262 DAHTKRLSLFGFPSST--LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGCLP--PSISRLINLN 335 (424)
Q Consensus 262 ~~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~p--~~~~~l~~L~ 335 (424)
++.+++|+++...++. +- -...|.+|+.|.+.++.+.+.....+..-.+|+.|+++++. +.... --+..+..|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3779999999988875 22 23889999999999999998776667777899999999984 43332 3467889999
Q ss_pred eeeeccccccc-ccCCh-hhhc-cCCCCEEEecCCc--Cc-ccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045 336 ALFLRSSCSLL-LQLPA-EIGR-LQKLEILDVSHTK--VQ-CLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMIS 408 (424)
Q Consensus 336 ~l~l~~~~~~~-~~lp~-~~~~-l~~L~~L~l~~~~--i~-~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 408 (424)
.||+ +.+.. .+.-. .+.. -++|..|++++++ +. +--.. ...++.|.+|++++|-... + ..
T Consensus 264 ~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~----------~-~~ 330 (419)
T KOG2120|consen 264 ELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK----------N-DC 330 (419)
T ss_pred hcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC----------c-hH
Confidence 9999 44443 22211 1111 2578889998885 32 21122 4688999999999985432 2 67
Q ss_pred hhhhhccccCceeecC
Q 037045 409 LNIISKLRLLEELIIE 424 (424)
Q Consensus 409 ~~~l~~l~~L~~L~l~ 424 (424)
+.++-+++-|++|+++
T Consensus 331 ~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLS 346 (419)
T ss_pred HHHHHhcchheeeehh
Confidence 8899999999999875
No 371
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0054 Score=54.71 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=92.1
Q ss_pred cceeEEEeeccCCCC-CCCC-cCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCCC------CcCChhhh----
Q 037045 263 AHTKRLSLFGFPSST-LPDM-PNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI------GCLPPSIS---- 329 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~------~~~p~~~~---- 329 (424)
+.++.|+++.|.+.. +... ....+|++|.+.+..+. ......+..+|.++.|.++.|++ .+....++
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~ 176 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVL 176 (418)
T ss_pred ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhh
Confidence 889999999999886 2333 56778999988877765 22233355566666666665522 00000011
Q ss_pred --------------------cccccceeeecccccccccCC--hhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEe
Q 037045 330 --------------------RLINLNALFLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYL 385 (424)
Q Consensus 330 --------------------~l~~L~~l~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l 385 (424)
-++++..+-+ ..+.+.+.. ...-.++.+..|+++.+++.+.- +.+..++.|+-|
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v--~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFV--CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheee--ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 1344444444 344443332 23445677778888888876442 357888999999
Q ss_pred eeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 386 RVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 386 ~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
+++.+++...+-. .....--++.|++++.|+
T Consensus 255 Rv~~~Pl~d~l~~------~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 255 RVSENPLSDPLRG------GERRFLLIARLTKVQVLN 285 (418)
T ss_pred eccCCcccccccC------CcceEEEEeeccceEEec
Confidence 9999876543322 333444556777777765
No 372
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.38 E-value=0.0032 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|.+.|++|+||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999876
No 373
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.38 E-value=0.017 Score=55.50 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=54.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH-----
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR----- 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 68 (424)
..++|.|.+|+|||||.+.++.... .+.+++.-++.. ....++.+..+..-+... ...+....
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 3689999999999999999998662 356778777764 456666655443322111 11111111
Q ss_pred -HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 -ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 -~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
.-.+.+++ +++++|+++|++...
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12233344 468999999998654
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.37 E-value=0.007 Score=53.52 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=50.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCCHHHHHHHHHHHhcccc----------------c---
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA----------------K--- 61 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------------~--- 61 (424)
+++.|.|++|+|||+++.+++.... .. -..++|++...+ .+++.+.+. .++... .
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 4789999999999999999886652 33 456788886544 344444332 222110 1
Q ss_pred --ccChhHHHHHHHHHhcc-CcEEEEEcCCCC
Q 037045 62 --ELNNDLRADIISKELND-RSYVLFLDGVSS 90 (424)
Q Consensus 62 --~~~~~~~~~~l~~~l~~-~~~LlvlD~~~~ 90 (424)
..+.......+.+.++. +...+|+|.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 23445555666665554 446888888543
No 375
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.37 E-value=0.012 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 376
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.017 Score=59.24 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
+|++++|+.|+||||.+.+++...........+..++...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt 225 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS 225 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence 4899999999999999999998763222223455555433
No 377
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.36 E-value=0.0028 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|.+|+||||+|+.+++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 378
>PRK14531 adenylate kinase; Provisional
Probab=96.36 E-value=0.011 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|.|.|++|+||||+++.+++..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999976
No 379
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.36 E-value=0.034 Score=50.67 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER 55 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 55 (424)
.++.|.|++|+||||++.+++.... ..+-..++|+++.. ...++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 4788999999999999999988763 22235688887655 345555555444
No 380
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.36 E-value=0.0022 Score=50.17 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCce
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDI 33 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 33 (424)
|.|.|.+|+|||++|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~--~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL--GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT--T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc--CCceeE
Confidence 5789999999999999999988 566643
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.021 Score=47.24 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHH-HHHHHHHhccCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLR-ADIISKELNDRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~~l~~~~ 80 (424)
.+++|.|+.|.|||||++.++.... ...+.+++.-...... ........++.... .+.++. .-.+...+-...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCC
Confidence 3789999999999999999988652 3445555543221110 01111222221111 111221 222444444567
Q ss_pred EEEEEcCCCCcchhhhh-----ccC-CCCCCcEEEEEecchhhhcc-cCceEEe
Q 037045 81 YVLFLDGVSSEINFKEI-----GMH-DDHGRGKVVFACRSREFCWQ-ADGVIHV 127 (424)
Q Consensus 81 ~LlvlD~~~~~~~~~~~-----~~~-~~~~~~~iiittr~~~~~~~-~~~~~~l 127 (424)
=++++|+.....|.... .+. ....+..++++|........ .+..+.+
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 153 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVL 153 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 88999997765432222 011 11224678888877666552 2444443
No 382
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.35 E-value=0.0039 Score=56.62 Aligned_cols=77 Identities=22% Similarity=0.435 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.++|+.|+|||++++...+.... +.+ .+.-+.++...+...+.+.+-..+...... .. .--.+++++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~~--------gP~~~k~lv 103 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR-VY--------GPPGGKKLV 103 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-EE--------EEESSSEEE
T ss_pred cEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-CC--------CCCCCcEEE
Confidence 4789999999999999999876532 221 233445555433333322221111110000 00 001357899
Q ss_pred EEEcCCCC
Q 037045 83 LFLDGVSS 90 (424)
Q Consensus 83 lvlD~~~~ 90 (424)
+.+||+.-
T Consensus 104 ~fiDDlN~ 111 (272)
T PF12775_consen 104 LFIDDLNM 111 (272)
T ss_dssp EEEETTT-
T ss_pred EEecccCC
Confidence 99999854
No 383
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.34 E-value=0.017 Score=55.54 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-------KELNNDL------R 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~ 68 (424)
..++|.|.+|+|||||++.++.... ...+++...-.+..+..++.+..+..-+... ...+... .
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 3689999999999999998887652 2223333333335566667665544422211 1111111 1
Q ss_pred HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
.-.+.+++ +++++|+++|++...
T Consensus 218 a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 12234444 468999999998653
No 384
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.32 E-value=0.029 Score=55.62 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN 38 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 38 (424)
+++.++||+|+||||.++.+++.. .|+.+=|.+
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 578999999999999999999976 455555653
No 385
>PRK13949 shikimate kinase; Provisional
Probab=96.32 E-value=0.0039 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|+-|.|+|+.|+||||+++.+++..
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5679999999999999999999987
No 386
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0023 Score=55.97 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=43.7
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCC--CCC-CCChHHhcccCCCcEEEccCCCCC---cCChhhhcccccce
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGK--RLE-KLPTSFFDYMCHLQLLDLHETNIG---CLPPSISRLINLNA 336 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~l~-~~~~~~~~~~~~L~~L~l~~~~~~---~~p~~~~~l~~L~~ 336 (424)
..++.+++.+..++.+..+..+++|+.|.++.| ++. +++.. ...+++|+++++++|++. ++++ ...+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccch-hhhhcchhh
Confidence 455566666666666666666777777777777 333 22222 334577777777777652 2322 445555666
Q ss_pred eee
Q 037045 337 LFL 339 (424)
Q Consensus 337 l~l 339 (424)
|++
T Consensus 121 Ldl 123 (260)
T KOG2739|consen 121 LDL 123 (260)
T ss_pred hhc
Confidence 666
No 387
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.30 E-value=0.02 Score=51.79 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=58.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc--c---cccCh---hHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN--A---KELNN---DLRADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~---~~~~~---~~~~~~l~~ 74 (424)
-++|.|+.|+|||||.+.++.... ...+.+++.-..-... +-..++......- . ...+. .....-+..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHHHHHHH
Confidence 478999999999999999998773 2233444431111100 1112232222111 1 11111 111222333
Q ss_pred Hhc-cCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045 75 ELN-DRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF 117 (424)
Q Consensus 75 ~l~-~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~ 117 (424)
.+. ..+-++++|+......+..+ +.....|..+|+||.....
T Consensus 189 ~i~~~~P~villDE~~~~e~~~~l-~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIGREEDVEAL-LEALHAGVSIIATAHGRDV 231 (270)
T ss_pred HHHhCCCCEEEEeCCCcHHHHHHH-HHHHhCCCEEEEEechhHH
Confidence 333 46789999998877655555 1112357789999986554
No 388
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.29 E-value=0.019 Score=55.77 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC--ceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChh------
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF--DIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNND------ 66 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------ 66 (424)
-++|.|.+|+|||+|+.++++....++.+ ..++++-++.. .+..++.+.+...=.... ...+..
T Consensus 143 R~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~ 222 (458)
T TIGR01041 143 KLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTP 222 (458)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999877433222 25777777664 456677777764422211 111111
Q ss_pred HHHHHHHHHhc---cCcEEEEEcCCCCc
Q 037045 67 LRADIISKELN---DRSYVLFLDGVSSE 91 (424)
Q Consensus 67 ~~~~~l~~~l~---~~~~LlvlD~~~~~ 91 (424)
.....+.++++ ++++|+++|++...
T Consensus 223 ~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 223 RMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 11223455555 57899999998653
No 389
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.29 E-value=0.024 Score=47.50 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccC---hhHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELN---NDLRADIISKELN 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~---~~~~~~~l~~~l~ 77 (424)
.++.|.|.+|+||||+|..++.... . .++++.-... ..++..+.+........ .... ..++...+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 4789999999999999999988752 1 2445554443 34455555544433222 1111 1123333333222
Q ss_pred cCcEEEEEcCCCC
Q 037045 78 DRSYVLFLDGVSS 90 (424)
Q Consensus 78 ~~~~LlvlD~~~~ 90 (424)
+.-++++|.+..
T Consensus 76 -~~~~VlID~Lt~ 87 (170)
T PRK05800 76 -PGRCVLVDCLTT 87 (170)
T ss_pred -CCCEEEehhHHH
Confidence 233788898643
No 390
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.095 Score=53.53 Aligned_cols=145 Identities=12% Similarity=0.154 Sum_probs=82.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L 82 (424)
+.|+|++|+|||-||+.++-... - =|++++.. ++.+.+ .... ......+...- ...+++
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAg--V-----PF~svSGS----EFvE~~----~g~~-----asrvr~lf~~ar~~aP~i 406 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAG--V-----PFFSVSGS----EFVEMF----VGVG-----ASRVRDLFPLARKNAPSI 406 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccC--C-----ceeeechH----HHHHHh----cccc-----hHHHHHHHHHhhccCCeE
Confidence 67899999999999999999873 2 23343332 222111 1110 11111122222 235789
Q ss_pred EEEcCCCCcc-----------------hhhhhccC---CCCCCcEEEE-Eecchhhhc-------ccCceEEecCCCHHH
Q 037045 83 LFLDGVSSEI-----------------NFKEIGMH---DDHGRGKVVF-ACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 83 lvlD~~~~~~-----------------~~~~~~~~---~~~~~~~iii-ttr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
+.+|+++... -+.++... ....+.-|++ +|+..+... ..+..+.++.-+...
T Consensus 407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 9999876431 13333111 1122323444 343333222 667788888888888
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYM 170 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pla 170 (424)
..++|..++...... .+..++.+ |+...-|++=|
T Consensus 487 r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 487 RASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 889999888765322 44455566 99999888733
No 391
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.28 E-value=0.052 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+..|.|++|+|||+|+..++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987653
No 392
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.28 E-value=0.0032 Score=54.48 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|++|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 393
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.28 E-value=0.0039 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
++++|.|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988763
No 394
>PRK13947 shikimate kinase; Provisional
Probab=96.28 E-value=0.0044 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.-|.|.|++|+||||+|+.+++..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999987
No 395
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.037 Score=46.53 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|.|||||.+.++--.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999999876
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.28 E-value=0.0048 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 397
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.27 E-value=0.015 Score=53.12 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=40.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH-HhcccccccChhHHHHHHHHHhccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE-RLKVNAKELNNDLRADIISKELNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~ 79 (424)
-+|+|.|+.|+||||+|+.+.........-..+..+............+..-. +-.......+.+.....+.....++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~ 141 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGK 141 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCC
Confidence 37999999999999999888766621011113445554443332222222110 0001114455555566665554443
No 398
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.26 E-value=0.043 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.744 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|.+||.-|+|||+|++.+.+.+.
T Consensus 88 VLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 88 VLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred eEEecCCCCChHHHHHHHHHHHH
Confidence 67899999999999999999883
No 399
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.26 E-value=0.011 Score=55.66 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.|.|.|+.|+||||+.+.++... .......++.. ..+.. .........+...+...+.......++..++...=
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i--~~~~~~~i~ti-Edp~E--~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYI--NKNAAGHIITI-EDPIE--YVHRNKRSLINQREVGLDTLSFANALRAALREDPD 197 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh--CcCCCCEEEEE-cCChh--hhccCccceEEccccCCCCcCHHHHHHHhhccCCC
Confidence 478999999999999999998876 33333444422 11111 11100000011111111223345667777888888
Q ss_pred EEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045 82 VLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF 117 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~ 117 (424)
++++|++.+....... +.....|..++-|......
T Consensus 198 ~i~vgEird~~~~~~~-l~aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 198 VILIGEMRDLETVELA-LTAAETGHLVFGTLHTNSA 232 (343)
T ss_pred EEEEeCCCCHHHHHHH-HHHHHcCCcEEEEEcCCCH
Confidence 9999999877655432 2223345555555544333
No 400
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.26 E-value=0.0061 Score=55.20 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN 40 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 40 (424)
|++|+|.|.+|+|||||+.++..... +.. .+.-+...
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~--~~G-~V~~IKhd 37 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLS--GRG-RVGTVKHM 37 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CEEEEEEc
Confidence 68999999999999999999999995 333 46666543
No 401
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.24 E-value=0.013 Score=48.24 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=42.8
Q ss_pred EEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-
Q 037045 6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKELNDR- 79 (424)
Q Consensus 6 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~- 79 (424)
|.|++|+||||+|+.+++.+. ...++++.-. ......+.+...+. .....+.+.....+...+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-------~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-------LVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-------SEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC-------cceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhc
Confidence 689999999999999999872 2455533310 00111222222222 112334445556666666543
Q ss_pred -cEEEEEcCCCCc
Q 037045 80 -SYVLFLDGVSSE 91 (424)
Q Consensus 80 -~~LlvlD~~~~~ 91 (424)
..-+|||++=..
T Consensus 73 ~~~g~ildGfPrt 85 (151)
T PF00406_consen 73 CNRGFILDGFPRT 85 (151)
T ss_dssp TTTEEEEESB-SS
T ss_pred ccceeeeeecccc
Confidence 567889997544
No 402
>PRK07667 uridine kinase; Provisional
Probab=96.24 E-value=0.0043 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+||||+|+.+.+...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999874
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.23 E-value=0.0036 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999875
No 404
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.23 E-value=0.026 Score=54.93 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHH-----Hhc----ccc---cccChh---
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILE-----RLK----VNA---KELNND--- 66 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~-----~l~----~~~---~~~~~~--- 66 (424)
-++|.|.+|+|||+|+.++..... +.+-+.++++-++.. ....++.+.+.. .-+ ... ...++.
T Consensus 163 R~gIfgg~GvGKs~L~~~~~~~~~-~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~ 241 (494)
T CHL00060 163 KIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 241 (494)
T ss_pred EEeeecCCCCChhHHHHHHHHHHH-HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHH
Confidence 478999999999999999998732 222377888888774 456777777765 211 111 111111
Q ss_pred -----HHHHHHHHHhc--c-CcEEEEEcCCCCc
Q 037045 67 -----LRADIISKELN--D-RSYVLFLDGVSSE 91 (424)
Q Consensus 67 -----~~~~~l~~~l~--~-~~~LlvlD~~~~~ 91 (424)
...-.+.++++ + +++||++|++...
T Consensus 242 R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 242 RMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 22234556664 3 4999999998653
No 405
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.23 E-value=0.0059 Score=56.42 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQE 50 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 50 (424)
||++.+.|-||+||||+|...+-.... .-..+.-++.....++.+++.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTHHHHHHT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCccHHHHhC
Confidence 689999999999999999888887742 223466667666666655554
No 406
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.22 E-value=0.0042 Score=50.13 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|++|+|||||++.+++..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999875
No 407
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.20 E-value=0.004 Score=52.87 Aligned_cols=24 Identities=42% Similarity=0.564 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999865
No 408
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.19 E-value=0.025 Score=54.50 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=57.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc------C-----CCCceEEEEEeccCCCHHHHHHHHHHHhc-ccc-------ccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE------S-----RRFDIIFWENINTDGNIRDIQEIILERLK-VNA-------KEL 63 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~------~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~ 63 (424)
-++|.|.+|+|||||+.++++.... + ..-..+++.-++...+...++.+.+..-+ ... ...
T Consensus 143 RigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~ 222 (466)
T TIGR01040 143 KIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAND 222 (466)
T ss_pred eeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCC
Confidence 5789999999999999999987741 0 11125788888888777777776666654 221 111
Q ss_pred ChhH------HHHHHHHHhc---cCcEEEEEcCCCC
Q 037045 64 NNDL------RADIISKELN---DRSYVLFLDGVSS 90 (424)
Q Consensus 64 ~~~~------~~~~l~~~l~---~~~~LlvlD~~~~ 90 (424)
+... ..-.+.+.++ ++++|+++|++-.
T Consensus 223 p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 223 PTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111 1123445555 5899999999854
No 409
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.19 E-value=0.032 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++-..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 378999999999999999999765
No 410
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.19 E-value=0.027 Score=52.18 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=50.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhH------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDL------ 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------ 67 (424)
..++|.|..|+|||||.+.++.... .+..+...++. ..+..++..+....-+... ...+...
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999999999887652 23334444443 4466666666655432211 1111111
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 68 RADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
..-.+.+.+ +++++|+++|++-..
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchHH
Confidence 111223333 468999999997653
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.18 E-value=0.035 Score=51.61 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
.++++.|++|+||||++.+++.... ..-..+..++...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~ 152 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDT 152 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCc
Confidence 5899999999999999999999884 2223455555443
No 412
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.18 E-value=0.0048 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
..|.|+|++|+||||+|+.+++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 413
>PHA00729 NTP-binding motif containing protein
Probab=96.17 E-value=0.0045 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-|.|+|.+|+||||||..+++..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999975
No 414
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.039 Score=53.33 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=41.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc----cC
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN----DR 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~ 79 (424)
|.++|++|+|||-||+.++-...+ .| |...+..+ ++.-.+..+..++..+. .-
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~V--PF----F~~sGSEF-----------------dEm~VGvGArRVRdLF~aAk~~A 396 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGV--PF----FYASGSEF-----------------DEMFVGVGARRVRDLFAAAKARA 396 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCC--Ce----Eeccccch-----------------hhhhhcccHHHHHHHHHHHHhcC
Confidence 679999999999999999988742 22 22222221 22223333455555443 35
Q ss_pred cEEEEEcCCCCc
Q 037045 80 SYVLFLDGVSSE 91 (424)
Q Consensus 80 ~~LlvlD~~~~~ 91 (424)
+|+|.||+++..
T Consensus 397 PcIIFIDEiDav 408 (752)
T KOG0734|consen 397 PCIIFIDEIDAV 408 (752)
T ss_pred CeEEEEechhhh
Confidence 899999998763
No 415
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.005 Score=51.27 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.||+|+|||||++++.++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999976
No 416
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.17 E-value=0.0043 Score=50.59 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|.|.|++|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999976
No 417
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.16 E-value=0.03 Score=50.34 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=50.6
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhHH----
Q 037045 3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDLR---- 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~~---- 68 (424)
-++|.|.+|+|||+|| .++.+.. .-+. ++++-++.. .+..++.+.+...=... . ...+....
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 5789999999999996 5565543 2344 467777664 45667777776432111 1 11111111
Q ss_pred --HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 --ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 --~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
.-.+.+.+ +++++|+++||+...
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 12223333 468999999998664
No 418
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.16 E-value=0.11 Score=43.54 Aligned_cols=49 Identities=8% Similarity=0.162 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCcc----hhhhhccC--CCCCCcEEEEEecchhhhc-ccCceEEec
Q 037045 80 SYVLFLDGVSSEI----NFKEIGMH--DDHGRGKVVFACRSREFCW-QADGVIHVQ 128 (424)
Q Consensus 80 ~~LlvlD~~~~~~----~~~~~~~~--~~~~~~~iiittr~~~~~~-~~~~~~~l~ 128 (424)
.=+.|+|.-+... +++-++.. -..+|+.|||.|.+..... ....+++..
T Consensus 147 ~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 147 QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 3467889876542 33333222 3556799999999988777 666666655
No 419
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.099 Score=45.63 Aligned_cols=116 Identities=14% Similarity=0.251 Sum_probs=68.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh---c-cC
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL---N-DR 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l---~-~~ 79 (424)
+.++|++|.|||-||+.++.... +.|+.++... +.++. ++ +....+++.+ + ..
T Consensus 184 vlLygppgtGktLlaraVahht~-------c~firvsgse----lvqk~---ig---------egsrmvrelfvmareha 240 (404)
T KOG0728|consen 184 VLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSE----LVQKY---IG---------EGSRMVRELFVMAREHA 240 (404)
T ss_pred eEEecCCCCchhHHHHHHHhhcc-------eEEEEechHH----HHHHH---hh---------hhHHHHHHHHHHHHhcC
Confidence 67899999999999999998762 4455665541 11111 11 1122222222 2 24
Q ss_pred cEEEEEcCCCCc------------c--------hhhhh-ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045 80 SYVLFLDGVSSE------------I--------NFKEI-GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC 131 (424)
Q Consensus 80 ~~LlvlD~~~~~------------~--------~~~~~-~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~ 131 (424)
+-++..|.+++. + .+.++ +| ....+-|+|..|...++.. ..+..++..+-+
T Consensus 241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf-eatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc-ccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 678888888753 1 12222 22 2344567887776554443 566777888777
Q ss_pred HHHHHHHHHHHh
Q 037045 132 QREAKKLFWEVV 143 (424)
Q Consensus 132 ~~~~~~l~~~~~ 143 (424)
++.-.++++-+.
T Consensus 320 e~ar~~ilkihs 331 (404)
T KOG0728|consen 320 EEARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHHhh
Confidence 776667765444
No 420
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.052 Score=48.14 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC-----------CCC---ceEEEEE----ec--cCCCH----------------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES-----------RRF---DIIFWEN----IN--TDGNI---------------- 45 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-----------~~f---~~~~wv~----~~--~~~~~---------------- 45 (424)
.+++|.||.|.|||||.+.+.--.+.. ... ..+.||. +. -+.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 378999999999999999999744210 001 2355553 11 01111
Q ss_pred ------HHHHHHHHHHhcccc------cccChhHHH-HHHHHHhccCcEEEEEcCCCCcch------hhhh-ccCCCCCC
Q 037045 46 ------RDIQEIILERLKVNA------KELNNDLRA-DIISKELNDRSYVLFLDGVSSEIN------FKEI-GMHDDHGR 105 (424)
Q Consensus 46 ------~~~~~~i~~~l~~~~------~~~~~~~~~-~~l~~~l~~~~~LlvlD~~~~~~~------~~~~-~~~~~~~~ 105 (424)
.+...+.++..+... ...+-++.+ ..+.+.|-+..=|+++|+--...| +-++ .-.... |
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g 189 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G 189 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C
Confidence 234445555555443 333333433 355667778889999999544322 1111 001333 8
Q ss_pred cEEEEEecchhhhc-ccCceEEec
Q 037045 106 GKVVFACRSREFCW-QADGVIHVQ 128 (424)
Q Consensus 106 ~~iiittr~~~~~~-~~~~~~~l~ 128 (424)
+.|++.|.+-.... ..+.++-+.
T Consensus 190 ~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 190 KTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred CEEEEEeCCcHHhHhhCCEEEEEc
Confidence 99999998877665 445555444
No 421
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=96.14 E-value=0.049 Score=46.34 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=62.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCce----EEEEEeccCCCHHHHHHHHHHHhcccc-------cccChhHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI----IFWENINTDGNIRDIQEIILERLKVNA-------KELNNDLRADI 71 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~----~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~ 71 (424)
+|-|+|++|+|||....++..+......|.+ +.+++....++...+.+.+-..+.... .-.+++...+.
T Consensus 40 ~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~eEi 119 (293)
T KOG2859|consen 40 LVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQLEEI 119 (293)
T ss_pred EEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHHHHH
Confidence 6889999999999999999988766566644 788899999999988888777665442 22233344444
Q ss_pred HHHHhccCcEEEEEcCCCCc
Q 037045 72 ISKELNDRSYVLFLDGVSSE 91 (424)
Q Consensus 72 l~~~l~~~~~LlvlD~~~~~ 91 (424)
....++.-+++-.+|+.+-.
T Consensus 120 ~~~Cm~Rf~~v~C~~s~~ll 139 (293)
T KOG2859|consen 120 AGECMSRFRFVNCFASDDLL 139 (293)
T ss_pred HHHHHhhEEEEEeeccHHHH
Confidence 55555545666667765443
No 422
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.13 E-value=0.0057 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+++++|.|.+|+|||||++.+.....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 36899999999999999999998884
No 423
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.12 E-value=0.0078 Score=49.80 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|++++|.|..|+|||||+..+.....
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999884
No 424
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.12 E-value=0.026 Score=54.47 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-----cccC--hhH------H
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-----KELN--NDL------R 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~--~~~------~ 68 (424)
..++|.|..|+|||||++.++..... -.++++..-.+..+..++.+.+...-+... ...+ ... .
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~ 240 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV 240 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 36899999999999999999876521 123444443445566666666654422111 1111 111 1
Q ss_pred HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
.-.+.+++ +++++|+++|++...
T Consensus 241 a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 241 ATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 12233444 368999999998653
No 425
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.033 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+=|.++|++|+|||-||+.|+....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 4578999999999999999999883
No 426
>PRK15453 phosphoribulokinase; Provisional
Probab=96.12 E-value=0.036 Score=49.89 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=42.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHH--HHhcc--cc---cccChhHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIIL--ERLKV--NA---KELNNDLRADII 72 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l~~--~~---~~~~~~~~~~~l 72 (424)
.+|+|.|.+|+||||+++.+.+... ..-..+..++..... +....-.... +.-+. .. +..+.+.+...+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 5899999999999999999998773 221235555554433 3223222221 11121 11 455566666666
Q ss_pred HHHhc
Q 037045 73 SKELN 77 (424)
Q Consensus 73 ~~~l~ 77 (424)
++...
T Consensus 84 ~~l~~ 88 (290)
T PRK15453 84 REYGE 88 (290)
T ss_pred HHHhc
Confidence 66544
No 427
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.005 Score=50.56 Aligned_cols=20 Identities=50% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLH 22 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~ 22 (424)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999998
No 428
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.10 E-value=0.0053 Score=51.35 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|.|+|.+|+|||||++++++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999884
No 429
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.09 E-value=0.013 Score=50.69 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN 44 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 44 (424)
+|+|+|-||+||||+|.-++.+...+..| .++-|+...+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCC
Confidence 68999999999999999977766433333 355667666554
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.09 E-value=0.0076 Score=51.45 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI 51 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 51 (424)
++.|.|++|+|||+++.+++.... ..-..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 468999999999999999988763 3335578887643 34444443
No 431
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.06 Score=47.23 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----ccC
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----NDR 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~ 79 (424)
+..+|++|+|||-+|+..+... ...|-.. . +.+--..-.++.++.++..+ ...
T Consensus 208 vLmYGPPGTGKTlmARAcAaqT--~aTFLKL-----A----------------gPQLVQMfIGdGAkLVRDAFaLAKEka 264 (424)
T KOG0652|consen 208 VLMYGPPGTGKTLMARACAAQT--NATFLKL-----A----------------GPQLVQMFIGDGAKLVRDAFALAKEKA 264 (424)
T ss_pred eEeeCCCCCcHHHHHHHHHHhc--cchHHHh-----c----------------chHHHhhhhcchHHHHHHHHHHhhccC
Confidence 6789999999999999988866 3333111 0 11111111222333344333 235
Q ss_pred cEEEEEcCCCCc--------------------chhhhh-ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045 80 SYVLFLDGVSSE--------------------INFKEI-GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC 131 (424)
Q Consensus 80 ~~LlvlD~~~~~--------------------~~~~~~-~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~ 131 (424)
++++.+|.++-. +.+.++ +|. ....-|||..|..-++.. .-+..+++..-+
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs-s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-CccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 899999997642 113333 333 233457776665443333 455666666555
Q ss_pred HHHHHHHHHHHhccc-CCCCccHHHHHH
Q 037045 132 QREAKKLFWEVVGVH-LKKYPDIELVAD 158 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 158 (424)
++.-..+++-+.-+- ..+.-.+++.++
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 554445555444332 334445555444
No 432
>PRK00625 shikimate kinase; Provisional
Probab=96.08 E-value=0.006 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|.|+|+.|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 433
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.06 E-value=0.0058 Score=50.28 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
++|++|+|..|+|||||..++.....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 57999999999999999999999984
No 434
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.093 Score=45.86 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF 31 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f 31 (424)
=|.++|++|+|||-||+.+++.. ...|
T Consensus 191 gvllygppg~gktml~kava~~t--~a~f 217 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHT--TAAF 217 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhcc--chhe
Confidence 36789999999999999999987 4444
No 435
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.06 E-value=0.01 Score=54.07 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN 44 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 44 (424)
|++|+|.|-||+||||++..++.... ..-..++-|++....+
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La--~~G~kVlliD~Dpq~n 42 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALA--EMGKKVMIVGCDPKAD 42 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHH--hCCCeEEEEEcCCCCC
Confidence 68899999999999999999999884 2223466677665543
No 436
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.11 Score=52.55 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=76.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
.++.++|.+|+||||+++.+++.. ..|+ +-+++.. +.. +....++......+.+.-+...+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~l--g~h~---~evdc~e----------l~~----~s~~~~etkl~~~f~~a~~~~pa 492 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASEL--GLHL---LEVDCYE----------LVA----ESASHTETKLQAIFSRARRCSPA 492 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh--CCce---EeccHHH----------Hhh----cccchhHHHHHHHHHHHhhcCce
Confidence 468899999999999999999988 3433 2222111 000 00011111111112222223455
Q ss_pred EEEEcCCCCc-------c------hhhhh-c---cCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHH
Q 037045 82 VLFLDGVSSE-------I------NFKEI-G---MHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 82 LlvlD~~~~~-------~------~~~~~-~---~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~ 139 (424)
+|.+-|++-. . .++.+ . ++...++.-++.|+.+..-.+ .....++++.+++++-.++|
T Consensus 493 vifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iL 572 (953)
T KOG0736|consen 493 VLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEIL 572 (953)
T ss_pred EEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHH
Confidence 6666655421 1 11111 1 122223333444444433222 55677889999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 140 WEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
+.+..... -..+...+.++++|.|+-
T Consensus 573 q~y~~~~~---~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 573 QWYLNHLP---LNQDVNLKQLARKTSGFS 598 (953)
T ss_pred HHHHhccc---cchHHHHHHHHHhcCCCC
Confidence 99886542 111234456777777764
No 437
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.09 Score=49.68 Aligned_cols=129 Identities=19% Similarity=0.286 Sum_probs=68.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc------CCCCceEEEEE------eccCCCHHHHHHHH-----------HHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE------SRRFDIIFWEN------INTDGNIRDIQEII-----------LERLKV 58 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~------~~~f~~~~wv~------~~~~~~~~~~~~~i-----------~~~l~~ 58 (424)
+-|+|+|+.|+||+||.+-+.-.... +.+--.+=|++ +....++...+... +-.++.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL 693 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGL 693 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhh
Confidence 45899999999999999998876543 12222345554 22222333322211 111222
Q ss_pred cc-------cccChhHHHH-HHHHHhccCcEEEEEcCCCCcchhhhh-ccC---CCCCCcEEEEEecchhhhcccCceEE
Q 037045 59 NA-------KELNNDLRAD-IISKELNDRSYVLFLDGVSSEINFKEI-GMH---DDHGRGKVVFACRSREFCWQADGVIH 126 (424)
Q Consensus 59 ~~-------~~~~~~~~~~-~l~~~l~~~~~LlvlD~~~~~~~~~~~-~~~---~~~~~~~iiittr~~~~~~~~~~~~~ 126 (424)
.. ...+-.+... .+.+..-+.+=+||+|.-.+..+++.+ ++. ....|..|+|+--.+-+..+...-+.
T Consensus 694 ~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwV 773 (807)
T KOG0066|consen 694 ASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWV 773 (807)
T ss_pred hhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEE
Confidence 11 1122222222 233333456778999998877776666 222 44556655555544444445555555
Q ss_pred ecCC
Q 037045 127 VQQL 130 (424)
Q Consensus 127 l~~l 130 (424)
++.-
T Consensus 774 vE~Q 777 (807)
T KOG0066|consen 774 VENQ 777 (807)
T ss_pred EccC
Confidence 5543
No 438
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.2 Score=47.05 Aligned_cols=59 Identities=19% Similarity=0.037 Sum_probs=42.2
Q ss_pred ccCceEEecCCCHHHHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 120 QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
....+++++..+.+|+.+++..+.... ......-++-.+++.-...|+|-.+..++..+
T Consensus 401 qpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 401 QPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 556678999999999999998887655 11111224456778888899997777776654
No 439
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.04 E-value=0.0094 Score=52.75 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc-----CCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGE-----SRRFDIIFWENINTDGNIRDIQEIILE 54 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~ 54 (424)
+..|+|++|+|||+++..+...... .......+-+....+..++.+++.+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4789999999999888888877721 133344444454555456666655544
No 440
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0067 Score=49.37 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++++|+|.+|+||||+.+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 3689999999999999999988876
No 441
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.03 E-value=0.0058 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+|||||++.++...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999976
No 442
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.03 E-value=0.013 Score=55.41 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=44.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+-|||..|.|||-|+-.+|+...++..- ++. --.+..++.+.+..-. ........+.+.+.++..||
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~H--------Fh~Fm~~vh~~l~~~~---~~~~~l~~va~~l~~~~~lL 131 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRKR--RVH--------FHEFMLDVHSRLHQLR---GQDDPLPQVADELAKESRLL 131 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCccccc--ccc--------ccHHHHHHHHHHHHHh---CCCccHHHHHHHHHhcCCEE
Confidence 6789999999999999999998652211 101 0122223322222111 12223445556666778899
Q ss_pred EEcCCCCc
Q 037045 84 FLDGVSSE 91 (424)
Q Consensus 84 vlD~~~~~ 91 (424)
.||+++-.
T Consensus 132 cfDEF~V~ 139 (362)
T PF03969_consen 132 CFDEFQVT 139 (362)
T ss_pred EEeeeecc
Confidence 99996543
No 443
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.02 E-value=0.051 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.++|.|++|+||||||+.+.--+.
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~ 387 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWP 387 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccc
Confidence 689999999999999999987663
No 444
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.01 E-value=0.0071 Score=48.10 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE 27 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 27 (424)
.+|.+.|.-|+||||+++.+++....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 37999999999999999999998753
No 445
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.013 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+|.++|.+|.||||+|..+.+...
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999883
No 446
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.01 E-value=0.028 Score=50.13 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=43.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC--HHHHHHHHHHHh----ccc---ccccChhHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN--IRDIQEIILERL----KVN---AKELNNDLRADIIS 73 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l----~~~---~~~~~~~~~~~~l~ 73 (424)
+|+|.|.+|+||||+++.+.+... ..-..+..++...... ....-+.+.... ... ....+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999998873 2222344555433322 222222222221 111 24555666666666
Q ss_pred HHhccCc
Q 037045 74 KELNDRS 80 (424)
Q Consensus 74 ~~l~~~~ 80 (424)
...+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 6655543
No 447
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.01 E-value=0.01 Score=53.80 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=37.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIIL 53 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 53 (424)
+++.|.|.+|+|||+++.++.... ......++||+.... .+++.+...
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCC--HHHHHHHHH
Confidence 578999999999999999999988 455778999887664 444444443
No 448
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.01 E-value=0.024 Score=56.16 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII 52 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 52 (424)
+++.|.|++|+|||||+.+++.... .+-..++|+..- .+.+++.+..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~e--Es~~~i~~~~ 310 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYE--ESRAQLLRNA 310 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEee--CCHHHHHHHH
Confidence 4788999999999999999999873 344567776644 3455555543
No 449
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.00 E-value=0.017 Score=49.69 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+++...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999884
No 450
>PRK13768 GTPase; Provisional
Probab=96.00 E-value=0.011 Score=53.30 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI 39 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 39 (424)
+.+++|.|++|+||||++..+..... ..-..++.++.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~--~~g~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLE--EQGYDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHH--hcCCceEEEEC
Confidence 46889999999999999999998874 22234555554
No 451
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.00 E-value=0.05 Score=56.97 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc-------c-------CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG-------E-------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDL 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~-------~-------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 67 (424)
+++.|+|+.+.||||+.+.++-..- + -..|+. ++..++...++..-...+...+. +
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m~---------~ 397 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHMT---------N 397 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHHHH---------H
Confidence 4789999999999999998875420 0 112332 34455544343332322222211 1
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCcchh---hhh--ccC--CCCCCcEEEEEecchhhhc
Q 037045 68 RADIISKELNDRSYVLFLDGVSSEINF---KEI--GMH--DDHGRGKVVFACRSREFCW 119 (424)
Q Consensus 68 ~~~~l~~~l~~~~~LlvlD~~~~~~~~---~~~--~~~--~~~~~~~iiittr~~~~~~ 119 (424)
....+. .+ ..+-|+++|+....-+. ..+ .+. ....++.+|+||.......
T Consensus 398 ~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 398 IVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA 454 (782)
T ss_pred HHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH
Confidence 122222 22 46779999998754321 111 111 1234789999999877655
No 452
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.00 E-value=0.034 Score=49.11 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE---------eccCCCHHH--HHHHHHHHhcccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN---------INTDGNIRD--IQEIILERLKVNA 60 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---------~~~~~~~~~--~~~~i~~~l~~~~ 60 (424)
+|.+.||+|+||||.++++..... ..+....-|+ .+-+.++.+ -.+++.++.+..+
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 678889999999999999999884 3333222222 222344444 3456666665444
No 453
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.99 E-value=0.029 Score=52.72 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=58.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc--------cccCh-----hHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA--------KELNN-----DLR 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~--------~~~~~-----~~~ 68 (424)
-|+|+..+|+|||||..++++.. .+|.++---++. ...+.++.++.+..-+... +.... ...
T Consensus 165 RiGIFAgsGVGKStLLgMiar~t----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~ 240 (441)
T COG1157 165 RIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFT 240 (441)
T ss_pred eeEEEecCCCcHHHHHHHHhccc----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHH
Confidence 58999999999999999999954 566644444444 6788889888887765443 11111 122
Q ss_pred HHHHHHHhc--cCcEEEEEcCCCC
Q 037045 69 ADIISKELN--DRSYVLFLDGVSS 90 (424)
Q Consensus 69 ~~~l~~~l~--~~~~LlvlD~~~~ 90 (424)
+..+.++++ ++++|+++|-+..
T Consensus 241 At~IAEyFRDqG~~VLL~mDSlTR 264 (441)
T COG1157 241 ATTIAEYFRDQGKRVLLIMDSLTR 264 (441)
T ss_pred HHHHHHHHHhCCCeEEEEeecHHH
Confidence 345566664 5799999999854
No 454
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0061 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|.|.|++|+|||||++.+.+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999999865
No 455
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.98 E-value=0.021 Score=50.55 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII 52 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 52 (424)
.++.|.|++|+||||++.+++.... ..-..++|++ ...+.+++.+.+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~--~~g~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFL--QNGYSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEe--CCCCHHHHHHHH
Confidence 4789999999999999877777652 2224567776 333556666665
No 456
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.98 E-value=0.017 Score=56.87 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEecc-CCCHHHHHHHHHHHhcccc-c-----ccChhHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINT-DGNIRDIQEIILERLKVNA-K-----ELNNDLRADIISK 74 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~-~-----~~~~~~~~~~l~~ 74 (424)
-..|+|++|+|||||++++++... ..+.+. ++.+-++. +..+.++.+.+-.++-... + ........-.+.+
T Consensus 418 R~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae 496 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAK 496 (672)
T ss_pred EeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999998664 233444 33444554 3445455444311111111 1 1111112222333
Q ss_pred Hh--ccCcEEEEEcCCCCc
Q 037045 75 EL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 75 ~l--~~~~~LlvlD~~~~~ 91 (424)
.+ .++.+||++|++...
T Consensus 497 ~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 497 RLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHcCCCEEEEEeCchHH
Confidence 34 468999999998653
No 457
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.96 E-value=0.35 Score=43.77 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhccc---------------------
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVN--------------------- 59 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~--------------------- 59 (424)
+..|+|+.|+||+.|.+.+.....+....+.|+||.-... .-.+....+..-.-+.-
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 4678899999999999999988877777788999863222 12222222221111100
Q ss_pred --------ccccChhHHHHHHHHHhccCcEEEEEcCCCC----cchhhhh--ccC----CCCC---CcEEEEEecchhhh
Q 037045 60 --------AKELNNDLRADIISKELNDRSYVLFLDGVSS----EINFKEI--GMH----DDHG---RGKVVFACRSREFC 118 (424)
Q Consensus 60 --------~~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~----~~~~~~~--~~~----~~~~---~~~iiittr~~~~~ 118 (424)
+..-+.+.....+.+.-+...+-||+|+.-+ ...+..+ ++| ...+ |-.|+|.-.+-.-.
T Consensus 169 msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNmnPR 248 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNMNPR 248 (369)
T ss_pred ecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccCCcc
Confidence 0112222233445555567799999998543 2334444 455 2222 33444433322211
Q ss_pred c---ccCceEEecCCCHHHHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045 119 W---QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 119 ~---~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
. ++...++++ +.-. ..+....-...+.|-....|+|.+|.++..
T Consensus 249 ~d~gGNI~~LKiq--------------AK~HIiSp~~~p~QlsRFin~yt~glp~~i~~LLK 296 (369)
T PF02456_consen 249 RDIGGNIANLKIQ--------------AKCHIISPKMHPSQLSRFINNYTKGLPTAISLLLK 296 (369)
T ss_pred cccCCCccchhhh--------------ceeeeecCCCCHHHHHHHHHHhccCCChhHHHHHH
Confidence 1 111111111 1000 223344455778888999999999976664
No 458
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.96 E-value=0.0093 Score=52.60 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN 44 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 44 (424)
.+|+|+|++|+|||||+..+...+..+.+--+++-|+-+.+++
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 4799999999999999999999986443334566666555554
No 459
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.019 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.++|++|+|||-+|+.++++.
T Consensus 214 vllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 214 VLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred eEEeCCCCCchhHHHHHHhccc
Confidence 6789999999999999999987
No 460
>PRK05439 pantothenate kinase; Provisional
Probab=95.92 E-value=0.043 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|.+|+||||+|+.+....
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998866
No 461
>PRK01184 hypothetical protein; Provisional
Probab=95.91 E-value=0.0074 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.+|+|+|++|+||||+++ +++..
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHc
Confidence 5789999999999999987 55543
No 462
>PRK14529 adenylate kinase; Provisional
Probab=95.91 E-value=0.02 Score=50.19 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=45.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCce--EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-c
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDI--IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR-S 80 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~ 80 (424)
|.|.|++|+||||+++.+++.+.. .+.+. ++.-.+..........++++.. ....+.+.....+.+.+.+. .
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCC
Confidence 788999999999999999998842 22221 1111222222222223333222 22233333445555555432 4
Q ss_pred EEEEEcCCCCc
Q 037045 81 YVLFLDGVSSE 91 (424)
Q Consensus 81 ~LlvlD~~~~~ 91 (424)
--+|||++=..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 56899997554
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.91 E-value=0.0074 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLH 22 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~ 22 (424)
.+++|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999986
No 464
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.91 E-value=0.021 Score=48.68 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|.+|+||||+|+.+.....
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998873
No 465
>PRK14528 adenylate kinase; Provisional
Probab=95.90 E-value=0.0083 Score=51.27 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|+.|.|.|++|+||||+|+.+++..
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5779999999999999999998876
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.01 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++|+|++|+|||||++.++--.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhccc
Confidence 68999999999999999998655
No 467
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.90 E-value=0.071 Score=49.54 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIIL 53 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 53 (424)
.++|.|..|+|||+|++++++.. +-+.++++-++.. ....++++++-
T Consensus 159 r~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 159 TAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred EEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 57899999999999999999865 3357888888774 45666666654
No 468
>PRK14530 adenylate kinase; Provisional
Probab=95.89 E-value=0.0077 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.|+|.|++|+||||+|+.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999877
No 469
>PTZ00494 tuzin-like protein; Provisional
Probab=95.89 E-value=0.39 Score=45.97 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHH-------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISK------- 74 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~------- 74 (424)
+|+++.|.-|.||++|.+....... -..++|++....+ -++.+.+.++.+..+.- ++..+.+.+
T Consensus 396 RIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLrsVVKALgV~nve~C-GDlLdFI~ea~~~A~~ 466 (664)
T PTZ00494 396 RIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLRSVVRALGVSNVEVC-GDLLGFVEEAMRGATV 466 (664)
T ss_pred cEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHHHHHHHhCCCChhhh-ccHHHHHHHHHHHHHH
Confidence 7899999999999999999887552 1357888887644 46677778887651111 112222222
Q ss_pred HhccCcEEEEEc--CCCCcc-hhhhh-ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHHHHHh
Q 037045 75 ELNDRSYVLFLD--GVSSEI-NFKEI-GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 75 ~l~~~~~LlvlD--~~~~~~-~~~~~-~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
...++.=+||+- +-.+.. ...+. .+.....-|.|++---.+.... ..-..|.+..|+.++|.++-++..
T Consensus 467 ~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 467 KASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 233444344442 222221 22222 3335666788886544433332 444567788999999999987766
No 470
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.89 E-value=0.029 Score=54.01 Aligned_cols=86 Identities=13% Similarity=0.237 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------------cccChhH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------------KELNNDL 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------------~~~~~~~ 67 (424)
..++|.|+.|+|||||++.++.... .+..+...++. ..+..++..+.+..-+... ......+
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e 231 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATE 231 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHH
Confidence 4689999999999999999887552 23332233332 2334444444433322211 1111122
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 68 RADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
....+.+.+ +++++|+++|++-..
T Consensus 232 ~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 232 LCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHhhhccCCEEEeecchhHH
Confidence 233444444 357999999998653
No 471
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.88 E-value=0.006 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|.|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=95.88 E-value=0.008 Score=51.82 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999884
No 473
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.87 E-value=0.012 Score=47.48 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.|.|+|..|+||+++|+.++....
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTT
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999998763
No 474
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.86 E-value=0.0079 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|.|.|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998764
No 475
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.86 E-value=0.01 Score=54.29 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
|++|+|+|-||+||||++..++..... .-..++-|+....
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~--~G~rVLliD~Dpq 40 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAE--SGKKVLVVGCDPK 40 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh--CCCEEEEEeeCCc
Confidence 678999999999999999999988842 2223555554443
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.84 E-value=0.032 Score=53.70 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-------cccCh------hHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-------KELNN------DLR 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~------~~~ 68 (424)
..++|.|..|+|||||++.++...+ . ...++...-....+..++++..+..-+... ...+. ...
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~ 233 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAK--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL 233 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence 3689999999999999999998662 1 223443333334677777776655432211 11111 111
Q ss_pred HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 69 ADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
...+.+++ +++++|+++|++-..
T Consensus 234 a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchHHH
Confidence 12233333 368999999998764
No 477
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.84 E-value=0.066 Score=52.18 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=51.8
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHhhcc-----CCCCceEEEEEeccCCCHHHHHHHHHHHhc-ccc-------cccChhH-
Q 037045 3 KICIWGPLGVGKTTIM-ENLHHSIGE-----SRRFDIIFWENINTDGNIRDIQEIILERLK-VNA-------KELNNDL- 67 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~- 67 (424)
-++|.|..|+|||+|| ..+.+.... ...-+.++++-+++..+--.-+.+.+.+-+ ... ...+...
T Consensus 191 R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 191 RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHH
Confidence 4689999999999997 666666522 124467889998886543332444444433 111 1111111
Q ss_pred -----HHHHHHHHh--ccCcEEEEEcCCCC
Q 037045 68 -----RADIISKEL--NDRSYVLFLDGVSS 90 (424)
Q Consensus 68 -----~~~~l~~~l--~~~~~LlvlD~~~~ 90 (424)
....+.+.+ +++.+|+|+||+..
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 112333333 46899999999865
No 478
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.84 E-value=0.011 Score=52.43 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=23.2
Q ss_pred EEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 6 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
|.|++|+||||+++.+.+... ..-..++-|++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~--~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE--SNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT--TT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHH--hccCCceEEEcch
Confidence 689999999999999999984 3334455555433
No 479
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.83 E-value=0.008 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+++.|+|++|+||||||+.+++...
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999984
No 480
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.83 E-value=0.021 Score=52.60 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHh--cccc---cccCh--------hH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERL--KVNA---KELNN--------DL 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l--~~~~---~~~~~--------~~ 67 (424)
..|++.|.+|+|||.+.+++.+... +.+-...+|.-++. ...-.++..++.+.= .... ..+++ .-
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia-~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVal 226 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVAL 226 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHH-HHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehh
Confidence 3589999999999999999999884 34445577877776 345556666654431 1111 11111 11
Q ss_pred HHHHHHHHhc---cCcEEEEEcCCCC
Q 037045 68 RADIISKELN---DRSYVLFLDGVSS 90 (424)
Q Consensus 68 ~~~~l~~~l~---~~~~LlvlD~~~~ 90 (424)
..-.+.+.++ ++.+|+.+||+-.
T Consensus 227 tGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 227 TGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhhHHHHhhcccCCeEEEEehhhhH
Confidence 1123344444 4689999999754
No 481
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.82 E-value=0.016 Score=53.57 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI 51 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 51 (424)
.+++...|-|||||||+|...+-... +....++=|+..+..++.+.+..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777774 33355777777777776666654
No 482
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.82 E-value=0.0085 Score=48.13 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|+-|.+.|..|+|||||++.+.....
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCC
Confidence 67899999999999999999988663
No 483
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.82 E-value=0.0077 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999998765
No 484
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.81 E-value=0.016 Score=48.71 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQE 50 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 50 (424)
+..|.|-|+.|+|||+|..+.+.+.+ +.|. +++-.++-...+.+.+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~--~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALK--DEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHH--hhCCeEEEeceeechhhHHHHHh
Confidence 35789999999999999999999994 5565 355556666556555555
No 485
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.81 E-value=0.15 Score=51.10 Aligned_cols=41 Identities=17% Similarity=-0.011 Sum_probs=27.5
Q ss_pred cEEEEE-ecchhhhc----ccCceEEecCCCHHHHHHHHHHHhccc
Q 037045 106 GKVVFA-CRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVH 146 (424)
Q Consensus 106 ~~iiit-tr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~ 146 (424)
.++|.+ |++..... .....+.+.+++.+|..+++++.+.+.
T Consensus 234 ~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~ 279 (531)
T TIGR02902 234 FRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKI 279 (531)
T ss_pred eEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHc
Confidence 356654 44333222 555678899999999999998877543
No 486
>PLN02924 thymidylate kinase
Probab=95.80 E-value=0.045 Score=47.99 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE 27 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 27 (424)
.+|+|-|+.|+||||+++.+++....
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999999963
No 487
>PRK14527 adenylate kinase; Provisional
Probab=95.80 E-value=0.009 Score=51.30 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|.|.|++|+||||+|+.+++...
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998773
No 488
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.79 E-value=0.0086 Score=49.29 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|+|++|+||||+|+.+++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999877
No 489
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.79 E-value=0.0092 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|.+|+||||+|+.++.+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999976
No 490
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.78 E-value=0.0075 Score=50.31 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 037045 4 ICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~ 24 (424)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999986
No 491
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.77 E-value=0.026 Score=48.61 Aligned_cols=25 Identities=36% Similarity=0.278 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999884
No 492
>PRK06761 hypothetical protein; Provisional
Probab=95.77 E-value=0.02 Score=51.93 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
++|.|.|++|+||||+++.+++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999999884
No 493
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.77 E-value=0.038 Score=53.58 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH--hcccc-----cccCh------hHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER--LKVNA-----KELNN------DLR 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~-----~~~~~------~~~ 68 (424)
..++|.|..|+|||||++.++..... -.+++++.--...+..++.++.+.. +.... ...+. ...
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~ 235 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYT 235 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999988876521 2244444333344455554432221 11111 11111 111
Q ss_pred HHHHHHHh--ccCcEEEEEcCCCC
Q 037045 69 ADIISKEL--NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 ~~~l~~~l--~~~~~LlvlD~~~~ 90 (424)
...+.+++ +++++|+++|++-.
T Consensus 236 a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 236 ATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHCCCcEEEEEeChHH
Confidence 12233344 46899999999754
No 494
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.76 E-value=0.031 Score=54.42 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC--CCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhH-----
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR--RFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDL----- 67 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 67 (424)
-++|.|..|+|||+|+.++++....++ .--.++++-++.. ....++.+.+...=.... ...+...
T Consensus 145 R~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 224 (460)
T PRK04196 145 KLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTP 224 (460)
T ss_pred EEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHH
Confidence 478999999999999999998874321 1125778888764 566777777766422211 1111111
Q ss_pred -HHHHHHHHhc---cCcEEEEEcCCCCc
Q 037045 68 -RADIISKELN---DRSYVLFLDGVSSE 91 (424)
Q Consensus 68 -~~~~l~~~l~---~~~~LlvlD~~~~~ 91 (424)
....+.+.++ ++++|+++|++...
T Consensus 225 ~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 225 RMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 1234455665 37999999998653
No 495
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.75 E-value=0.014 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|.+|+||||+|+.+....
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999976
No 496
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.75 E-value=0.077 Score=44.98 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=60.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC---CCHHHHHHHHHHHh-----cccc--cccCh------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD---GNIRDIQEIILERL-----KVNA--KELNN------ 65 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~--~~~~~------ 65 (424)
..|.|+|..|.||||.|--++-+.. .+--.+..+.+-+. ..-...++.+- .+ +... ...+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 3688999999999999999988873 33334444444332 22233333321 11 1100 00111
Q ss_pred -hHHHHHHHHHhccCcE-EEEEcCCCCcc-----hhhhh-c-cCCCCCCcEEEEEecchh
Q 037045 66 -DLRADIISKELNDRSY-VLFLDGVSSEI-----NFKEI-G-MHDDHGRGKVVFACRSRE 116 (424)
Q Consensus 66 -~~~~~~l~~~l~~~~~-LlvlD~~~~~~-----~~~~~-~-~~~~~~~~~iiittr~~~ 116 (424)
....+..++.+...+| ++|||++-... +.+++ . +...-.+..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1123344555556666 99999975432 22222 1 123344568999998754
No 497
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.75 E-value=0.038 Score=53.60 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhH------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDL------ 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------ 67 (424)
..++|.|.+|+|||||++.++.... .+..+...++. ..+..++.......-+... ...+...
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~ 239 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAY 239 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence 3689999999999999999887652 23323333333 3355555555443311111 1111111
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045 68 RADIISKEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~~~~l~~~l--~~~~~LlvlD~~~~~ 91 (424)
..-.+.+.+ +++++|+++|++...
T Consensus 240 ~a~t~AE~frd~G~~Vll~~DslTr~ 265 (440)
T TIGR01026 240 VATAIAEYFRDQGKDVLLLMDSVTRF 265 (440)
T ss_pred HHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 112233344 468999999998653
No 498
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.015 Score=47.63 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN 38 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 38 (424)
.++++|++|+||+|+.+.+|..+..+ .+-+|+.
T Consensus 39 CvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~ 71 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVR 71 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence 57899999999999999999988432 3456654
No 499
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.70 E-value=0.012 Score=50.27 Aligned_cols=24 Identities=42% Similarity=0.731 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|.|.|++|+||+||++.+++..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999999986
No 500
>PLN02348 phosphoribulokinase
Probab=95.69 E-value=0.039 Score=52.10 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
-+|+|.|.+|+||||+|+.+.+...
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999999884
Done!