Query 037045
Match_columns 424
No_of_seqs 196 out of 4200
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.3E-36 3.2E-40 297.3 17.7 240 1-256 152-420 (549)
2 1vt4_I APAF-1 related killer D 100.0 2E-31 6.9E-36 271.3 14.3 225 1-252 150-400 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-30 2.1E-34 279.9 21.5 241 1-251 147-407 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-28 2.2E-32 243.9 20.1 239 2-251 148-407 (591)
5 4fcg_A Uncharacterized protein 99.7 2E-16 6.8E-21 147.5 14.2 159 263-424 104-285 (328)
6 4fcg_A Uncharacterized protein 99.7 7.8E-16 2.7E-20 143.5 14.2 132 261-394 79-220 (328)
7 3rfs_A Internalin B, repeat mo 99.7 1.2E-15 4E-20 138.5 14.1 148 263-424 63-213 (272)
8 4ezg_A Putative uncharacterize 99.7 1.1E-15 3.8E-20 131.6 13.3 143 263-424 44-189 (197)
9 3m19_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 133.2 14.9 148 263-424 35-187 (251)
10 2o6q_A Variable lymphocyte rec 99.6 1E-14 3.6E-19 132.0 15.3 148 263-424 61-213 (270)
11 2o6q_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 131.5 15.2 148 263-424 37-189 (270)
12 3e6j_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 127.3 14.6 132 262-395 39-174 (229)
13 3e6j_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 128.2 13.6 144 266-424 22-167 (229)
14 3rfs_A Internalin B, repeat mo 99.6 1.9E-14 6.5E-19 130.4 14.7 146 263-424 41-189 (272)
15 1h6u_A Internalin H; cell adhe 99.6 2.1E-14 7.1E-19 132.6 14.6 141 263-424 85-225 (308)
16 1h6t_A Internalin B; cell adhe 99.6 2.1E-14 7E-19 131.5 14.0 141 263-424 68-208 (291)
17 1xeu_A Internalin C; cellular 99.6 1.9E-14 6.5E-19 129.7 13.4 140 263-424 41-180 (263)
18 1h6u_A Internalin H; cell adhe 99.6 2.8E-14 9.6E-19 131.7 14.5 141 263-424 63-203 (308)
19 2v9t_B SLIT homolog 2 protein 99.6 2.3E-14 7.8E-19 125.5 12.7 130 263-394 32-166 (220)
20 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-14 8.5E-19 125.3 12.9 131 263-395 32-168 (220)
21 1h6t_A Internalin B; cell adhe 99.6 4E-14 1.4E-18 129.6 14.6 141 263-424 46-186 (291)
22 1ozn_A Reticulon 4 receptor; N 99.6 2.7E-14 9.2E-19 130.4 13.4 148 263-424 80-233 (285)
23 1ozn_A Reticulon 4 receptor; N 99.6 3.3E-14 1.1E-18 129.8 13.7 148 263-424 56-209 (285)
24 2o6s_A Variable lymphocyte rec 99.6 4.6E-14 1.6E-18 122.5 13.7 133 263-397 28-165 (208)
25 3m19_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 125.8 14.3 147 263-424 14-163 (251)
26 1p9a_G Platelet glycoprotein I 99.5 3.3E-14 1.1E-18 130.0 12.8 128 263-393 55-185 (290)
27 1p9a_G Platelet glycoprotein I 99.5 3.6E-14 1.2E-18 129.7 12.1 146 263-424 31-180 (290)
28 1ogq_A PGIP-2, polygalacturona 99.5 2.8E-14 9.6E-19 132.1 11.2 160 263-424 50-229 (313)
29 2z80_A TOLL-like receptor 2, v 99.5 1.3E-14 4.5E-19 136.7 9.0 130 263-394 52-188 (353)
30 2z62_A TOLL-like receptor 4, v 99.5 3.8E-14 1.3E-18 128.7 11.7 130 263-394 28-163 (276)
31 2v9t_B SLIT homolog 2 protein 99.5 4.8E-14 1.6E-18 123.5 11.1 144 266-424 14-160 (220)
32 4ezg_A Putative uncharacterize 99.5 3.5E-14 1.2E-18 122.1 10.1 127 263-393 66-194 (197)
33 1m9s_A Internalin B; cell inva 99.5 8.1E-14 2.8E-18 139.8 14.2 141 263-424 65-205 (605)
34 2o6s_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 118.7 14.7 144 266-424 10-156 (208)
35 1ogq_A PGIP-2, polygalacturona 99.5 2.4E-14 8.3E-19 132.5 9.6 146 263-424 101-252 (313)
36 2v70_A SLIT-2, SLIT homolog 2 99.5 4.6E-14 1.6E-18 123.6 10.6 144 266-424 14-161 (220)
37 2ell_A Acidic leucine-rich nuc 99.5 5.2E-14 1.8E-18 117.7 10.5 127 263-393 24-160 (168)
38 3rgz_A Protein brassinosteroid 99.5 9.2E-14 3.1E-18 144.3 14.0 77 263-339 466-545 (768)
39 1a9n_A U2A', U2A'; complex (nu 99.5 5.4E-14 1.8E-18 118.7 9.8 127 262-392 18-152 (176)
40 2z66_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 129.5 10.2 148 263-424 101-256 (306)
41 2z66_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 130.4 9.1 148 263-424 78-231 (306)
42 4eco_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 137.2 15.8 147 264-424 403-574 (636)
43 1m9s_A Internalin B; cell inva 99.5 1.7E-13 5.8E-18 137.5 13.4 141 263-424 43-183 (605)
44 1w5s_A Origin recognition comp 99.5 1.2E-12 4E-17 126.0 18.7 232 3-246 52-335 (412)
45 3zyi_A Leucine-rich repeat-con 99.5 1.4E-13 4.8E-18 134.1 12.3 128 263-392 99-230 (452)
46 4ecn_A Leucine-rich repeat pro 99.5 3.9E-13 1.3E-17 139.7 16.0 127 284-424 672-814 (876)
47 2z62_A TOLL-like receptor 4, v 99.5 1.5E-13 5.3E-18 124.7 11.5 160 263-424 52-232 (276)
48 3zyj_A Leucine-rich repeat-con 99.5 1.8E-13 6E-18 132.9 12.1 127 263-392 112-243 (440)
49 3zyi_A Leucine-rich repeat-con 99.5 1.7E-13 5.8E-18 133.5 11.7 130 263-394 75-210 (452)
50 3zyj_A Leucine-rich repeat-con 99.5 2.2E-13 7.7E-18 132.2 12.5 148 263-424 88-239 (440)
51 2je0_A Acidic leucine-rich nuc 99.5 1.1E-13 3.8E-18 113.3 8.7 122 263-388 17-148 (149)
52 2je0_A Acidic leucine-rich nuc 99.5 1.3E-13 4.6E-18 112.8 9.2 129 283-424 15-148 (149)
53 3vq2_A TLR4, TOLL-like recepto 99.5 1.9E-13 6.6E-18 138.2 12.3 131 263-395 32-168 (606)
54 4g8a_A TOLL-like receptor 4; l 99.5 1E-13 3.5E-18 140.8 10.3 131 263-395 52-188 (635)
55 3o6n_A APL1; leucine-rich repe 99.5 1.6E-13 5.5E-18 131.0 11.1 130 262-393 44-178 (390)
56 2xot_A Amphoterin-induced prot 99.5 1.8E-13 6.3E-18 129.2 11.1 130 263-394 39-177 (361)
57 2qen_A Walker-type ATPase; unk 99.5 1.6E-12 5.6E-17 122.0 17.3 168 2-178 32-249 (350)
58 3rgz_A Protein brassinosteroid 99.5 2E-13 7E-18 141.7 12.0 148 263-424 394-546 (768)
59 4fmz_A Internalin; leucine ric 99.5 8.1E-13 2.8E-17 124.0 15.0 142 263-424 66-207 (347)
60 2xwt_C Thyrotropin receptor; s 99.5 8.7E-14 3E-18 123.5 7.7 125 264-391 32-167 (239)
61 1a9n_A U2A', U2A'; complex (nu 99.5 5.8E-14 2E-18 118.4 6.0 133 278-424 12-148 (176)
62 2xwt_C Thyrotropin receptor; s 99.4 1.6E-13 5.4E-18 121.8 8.9 147 263-424 55-213 (239)
63 4ecn_A Leucine-rich repeat pro 99.4 1.8E-13 6.3E-18 142.2 10.5 146 263-424 448-627 (876)
64 2z63_A TOLL-like receptor 4, v 99.4 2.6E-13 8.8E-18 136.2 11.3 130 263-394 28-163 (570)
65 2z81_A CD282 antigen, TOLL-lik 99.4 1.6E-13 5.3E-18 137.2 9.6 134 263-398 26-166 (549)
66 3bz5_A Internalin-J, INLJ; leu 99.4 9.9E-13 3.4E-17 128.0 14.6 118 263-391 42-159 (457)
67 2fna_A Conserved hypothetical 99.4 3.5E-12 1.2E-16 120.0 17.9 211 2-232 31-301 (357)
68 2ell_A Acidic leucine-rich nuc 99.4 3.1E-13 1.1E-17 113.0 9.5 129 283-424 22-155 (168)
69 2o6r_A Variable lymphocyte rec 99.4 9.9E-13 3.4E-17 110.9 12.5 129 266-397 10-141 (177)
70 1xeu_A Internalin C; cellular 99.4 1.3E-13 4.3E-18 124.2 7.3 140 263-424 19-158 (263)
71 3o6n_A APL1; leucine-rich repe 99.4 1.4E-12 4.9E-17 124.4 15.0 125 263-391 69-197 (390)
72 3oja_B Anopheles plasmodium-re 99.4 1E-12 3.5E-17 132.6 14.5 125 263-391 75-203 (597)
73 4fmz_A Internalin; leucine ric 99.4 1.5E-12 5.1E-17 122.2 14.8 142 263-424 88-229 (347)
74 2z7x_B TOLL-like receptor 1, v 99.4 6.4E-13 2.2E-17 131.8 12.7 123 266-393 3-128 (520)
75 2xot_A Amphoterin-induced prot 99.4 5.5E-13 1.9E-17 125.9 11.5 147 266-424 21-171 (361)
76 4g8a_A TOLL-like receptor 4; l 99.4 6.4E-13 2.2E-17 134.9 12.8 143 267-424 35-181 (635)
77 2id5_A Lingo-1, leucine rich r 99.4 5.1E-13 1.7E-17 131.1 11.6 147 263-423 56-207 (477)
78 2id5_A Lingo-1, leucine rich r 99.4 5.4E-13 1.8E-17 130.9 11.6 130 263-394 80-214 (477)
79 3oja_B Anopheles plasmodium-re 99.4 3.9E-13 1.3E-17 135.6 10.9 134 259-394 47-185 (597)
80 1xku_A Decorin; proteoglycan, 99.4 1.7E-12 5.9E-17 120.9 14.1 146 263-424 100-271 (330)
81 1o6v_A Internalin A; bacterial 99.4 1.7E-12 5.7E-17 127.0 14.4 123 263-392 221-343 (466)
82 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.9E-17 130.7 13.2 124 286-423 442-567 (567)
83 4eco_A Uncharacterized protein 99.4 1.9E-13 6.6E-18 138.8 7.7 127 263-392 206-365 (636)
84 2z80_A TOLL-like receptor 2, v 99.4 2.5E-13 8.4E-18 127.9 7.9 128 263-392 76-210 (353)
85 1wwl_A Monocyte differentiatio 99.4 8.8E-13 3E-17 121.9 11.4 130 263-395 95-243 (312)
86 1ziw_A TOLL-like receptor 3; i 99.4 9.1E-13 3.1E-17 135.1 12.7 131 263-395 25-160 (680)
87 3o53_A Protein LRIM1, AGAP0063 99.4 1E-13 3.5E-18 128.5 5.0 127 263-392 120-249 (317)
88 3oja_A Leucine-rich immune mol 99.4 3.7E-13 1.3E-17 132.2 9.2 127 263-393 99-227 (487)
89 3vq2_A TLR4, TOLL-like recepto 99.4 4.5E-13 1.6E-17 135.5 10.0 131 263-395 376-512 (606)
90 1w8a_A SLIT protein; signaling 99.4 1.4E-12 4.8E-17 111.5 11.4 129 266-397 11-143 (192)
91 2z81_A CD282 antigen, TOLL-lik 99.4 1.3E-12 4.5E-17 130.4 13.0 147 263-424 334-505 (549)
92 2wfh_A SLIT homolog 2 protein 99.4 2.5E-12 8.4E-17 110.0 12.8 125 266-394 13-140 (193)
93 3o53_A Protein LRIM1, AGAP0063 99.4 3.8E-13 1.3E-17 124.6 8.3 145 263-424 99-245 (317)
94 1xku_A Decorin; proteoglycan, 99.4 2.5E-12 8.6E-17 119.8 13.8 127 263-393 52-184 (330)
95 1wwl_A Monocyte differentiatio 99.4 5.5E-13 1.9E-17 123.3 9.0 144 263-424 149-304 (312)
96 3v47_A TOLL-like receptor 5B a 99.4 1.3E-12 4.3E-17 127.4 11.5 133 263-397 30-171 (455)
97 4glp_A Monocyte differentiatio 99.4 4.5E-13 1.5E-17 123.7 7.9 144 263-424 145-302 (310)
98 4b8c_D Glucose-repressible alc 99.4 5.6E-13 1.9E-17 137.0 9.3 133 263-398 224-359 (727)
99 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.3E-12 7.9E-17 129.1 13.3 126 263-393 31-159 (562)
100 1dce_A Protein (RAB geranylger 99.4 3.1E-12 1.1E-16 127.6 13.4 121 263-387 441-567 (567)
101 2ft3_A Biglycan; proteoglycan, 99.4 2.3E-12 7.8E-17 120.2 11.8 146 263-424 102-272 (332)
102 1o6v_A Internalin A; bacterial 99.4 4.9E-12 1.7E-16 123.6 14.4 155 263-424 199-361 (466)
103 1w8a_A SLIT protein; signaling 99.4 1.9E-12 6.4E-17 110.7 10.0 121 287-424 10-134 (192)
104 1ziw_A TOLL-like receptor 3; i 99.4 4.5E-12 1.5E-16 130.0 14.5 129 266-397 7-138 (680)
105 2z7x_B TOLL-like receptor 1, v 99.4 4.1E-12 1.4E-16 126.0 13.3 146 263-424 324-476 (520)
106 3j0a_A TOLL-like receptor 5; m 99.4 3.2E-12 1.1E-16 134.2 12.8 131 263-395 24-163 (844)
107 3t6q_A CD180 antigen; protein- 99.4 1.8E-12 6.1E-17 131.1 10.5 129 263-393 33-166 (606)
108 3oja_A Leucine-rich immune mol 99.4 4.8E-13 1.6E-17 131.4 6.0 128 263-393 120-250 (487)
109 1ds9_A Outer arm dynein; leuci 99.3 6.8E-14 2.3E-18 120.4 -0.2 169 241-422 7-180 (198)
110 2qby_B CDC6 homolog 3, cell di 99.3 4.8E-11 1.6E-15 113.5 19.5 218 2-232 46-295 (384)
111 2z63_A TOLL-like receptor 4, v 99.3 1.2E-12 4.2E-17 131.2 8.7 148 263-424 373-526 (570)
112 3v47_A TOLL-like receptor 5B a 99.3 3E-12 1E-16 124.8 11.1 133 263-397 275-412 (455)
113 4b8c_D Glucose-repressible alc 99.3 1.9E-12 6.7E-17 133.0 10.2 130 265-397 203-333 (727)
114 3cvr_A Invasion plasmid antige 99.3 6.3E-12 2.1E-16 124.9 13.1 14 411-424 225-238 (571)
115 2ft3_A Biglycan; proteoglycan, 99.3 3.3E-12 1.1E-16 119.1 10.5 125 263-393 147-277 (332)
116 4glp_A Monocyte differentiatio 99.3 2.6E-12 8.7E-17 118.7 9.5 131 263-395 91-239 (310)
117 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.8E-16 105.9 12.8 121 287-424 12-134 (193)
118 3bz5_A Internalin-J, INLJ; leu 99.3 1E-11 3.4E-16 120.9 13.8 120 263-393 85-204 (457)
119 3t6q_A CD180 antigen; protein- 99.3 7.9E-12 2.7E-16 126.3 12.7 160 263-424 278-457 (606)
120 3j0a_A TOLL-like receptor 5; m 99.3 4.8E-12 1.6E-16 132.8 11.3 144 266-424 7-156 (844)
121 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.4E-11 4.7E-16 123.4 13.7 146 263-424 353-505 (562)
122 1jl5_A Outer protein YOPM; leu 99.3 1.6E-11 5.3E-16 119.4 13.1 148 263-424 91-245 (454)
123 1fnn_A CDC6P, cell division co 99.3 1.7E-10 5.9E-15 109.8 19.7 172 2-175 45-247 (389)
124 3cvr_A Invasion plasmid antige 99.3 1.1E-11 3.6E-16 123.3 10.0 122 263-398 120-248 (571)
125 2ast_B S-phase kinase-associat 99.3 1.7E-12 5.8E-17 121.2 4.1 149 263-424 118-280 (336)
126 2v1u_A Cell division control p 99.3 8.1E-11 2.8E-15 111.9 15.7 217 2-231 45-300 (387)
127 2qby_A CDC6 homolog 1, cell di 99.3 6.9E-11 2.3E-15 112.4 15.0 218 2-232 46-297 (386)
128 2ast_B S-phase kinase-associat 99.3 3.8E-12 1.3E-16 118.8 5.9 149 263-424 93-255 (336)
129 3g06_A SSPH2 (leucine-rich rep 99.2 9.7E-11 3.3E-15 117.7 14.6 131 264-424 162-292 (622)
130 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 98.0 12.8 122 286-424 8-132 (177)
131 1jl5_A Outer protein YOPM; leu 99.2 7.7E-11 2.6E-15 114.6 12.7 121 263-394 131-251 (454)
132 2r9u_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 98.9 10.5 106 266-374 15-122 (174)
133 3g06_A SSPH2 (leucine-rich rep 99.2 1.2E-10 4E-15 117.1 13.4 113 263-392 61-173 (622)
134 1ds9_A Outer arm dynein; leuci 99.2 1.7E-12 5.8E-17 111.6 -0.0 124 285-424 18-148 (198)
135 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 97.6 10.1 102 266-370 12-115 (170)
136 2r9u_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 97.1 10.6 105 286-395 13-120 (174)
137 3g39_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 96.0 10.5 105 286-395 10-117 (170)
138 2ca6_A RAN GTPase-activating p 99.1 1.1E-11 3.7E-16 118.1 2.9 152 263-424 122-311 (386)
139 1njg_A DNA polymerase III subu 99.1 9E-10 3.1E-14 97.4 15.0 167 3-178 47-231 (250)
140 2ca6_A RAN GTPase-activating p 99.1 5.2E-11 1.8E-15 113.4 5.7 152 263-424 94-282 (386)
141 2chg_A Replication factor C sm 99.1 3.2E-09 1.1E-13 92.4 15.1 157 3-175 40-204 (226)
142 3goz_A Leucine-rich repeat-con 99.1 2.2E-10 7.5E-15 108.1 7.7 151 264-424 52-233 (362)
143 4ay9_X Follicle-stimulating ho 99.0 8.4E-10 2.9E-14 103.5 10.3 146 263-424 104-254 (350)
144 3goz_A Leucine-rich repeat-con 99.0 2.3E-10 8E-15 107.9 6.4 128 263-392 80-237 (362)
145 4ay9_X Follicle-stimulating ho 99.0 8.5E-10 2.9E-14 103.5 9.5 160 263-424 30-210 (350)
146 1z7x_W Ribonuclease inhibitor; 98.9 5E-10 1.7E-14 109.1 1.7 130 285-424 199-349 (461)
147 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.5E-13 95.1 10.8 102 267-370 12-116 (347)
148 1sxj_B Activator 1 37 kDa subu 98.8 3.8E-08 1.3E-12 90.9 12.9 156 4-175 45-210 (323)
149 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.9E-13 95.6 9.3 103 288-394 11-117 (347)
150 1z7x_W Ribonuclease inhibitor; 98.8 1.4E-09 4.8E-14 105.9 2.3 128 263-392 28-182 (461)
151 3te6_A Regulatory protein SIR3 98.8 2.1E-07 7.3E-12 84.8 16.0 144 2-145 46-213 (318)
152 3ogk_B Coronatine-insensitive 98.7 1E-08 3.4E-13 103.2 5.6 128 263-391 164-304 (592)
153 1iqp_A RFCS; clamp loader, ext 98.6 1.4E-07 4.9E-12 87.2 11.4 159 3-178 48-215 (327)
154 3un9_A NLR family member X1; l 98.6 2.2E-09 7.6E-14 101.3 -1.3 128 263-392 101-251 (372)
155 3un9_A NLR family member X1; l 98.6 5.5E-09 1.9E-13 98.5 0.8 152 263-424 72-247 (372)
156 3sb4_A Hypothetical leucine ri 98.6 8.3E-08 2.8E-12 89.0 8.1 37 284-321 100-136 (329)
157 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.5E-12 87.6 8.2 99 308-422 225-327 (329)
158 2z4s_A Chromosomal replication 98.5 4.3E-07 1.5E-11 87.5 11.8 157 3-175 132-306 (440)
159 2chq_A Replication factor C sm 98.5 1.3E-06 4.3E-11 80.4 14.3 154 3-176 40-205 (319)
160 1jr3_A DNA polymerase III subu 98.5 1.5E-06 5E-11 82.0 14.7 164 3-176 40-222 (373)
161 1xwi_A SKD1 protein; VPS4B, AA 98.5 5.6E-06 1.9E-10 76.3 17.7 155 2-176 46-224 (322)
162 1d2n_A N-ethylmaleimide-sensit 98.5 3.5E-06 1.2E-10 75.7 15.8 168 3-196 66-263 (272)
163 3bos_A Putative DNA replicatio 98.5 2.4E-07 8.3E-12 81.5 7.9 146 2-175 53-217 (242)
164 3ogk_B Coronatine-insensitive 98.5 1.6E-07 5.6E-12 94.3 6.9 123 263-388 192-326 (592)
165 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1E-05 3.4E-10 72.1 17.8 154 3-176 41-223 (262)
166 1hqc_A RUVB; extended AAA-ATPa 98.4 5.1E-06 1.8E-10 76.6 14.6 148 3-178 40-214 (324)
167 3eie_A Vacuolar protein sortin 98.4 7.6E-06 2.6E-10 75.4 15.5 153 3-176 53-229 (322)
168 3h4m_A Proteasome-activating n 98.4 4.7E-06 1.6E-10 75.3 13.4 151 3-175 53-231 (285)
169 3pvs_A Replication-associated 98.4 8.1E-06 2.8E-10 78.5 15.3 150 2-175 51-215 (447)
170 2qp9_X Vacuolar protein sortin 98.4 1.8E-05 6.2E-10 73.9 17.4 153 3-176 86-262 (355)
171 2p1m_B Transport inhibitor res 98.4 1.6E-07 5.4E-12 94.4 3.5 126 263-390 156-324 (594)
172 1l8q_A Chromosomal replication 98.3 5.5E-06 1.9E-10 76.5 13.6 149 3-172 39-205 (324)
173 1sxj_D Activator 1 41 kDa subu 98.3 4.8E-06 1.6E-10 77.8 12.3 165 3-173 60-233 (353)
174 1sxj_A Activator 1 95 kDa subu 98.3 1.9E-06 6.5E-11 84.8 9.6 162 2-175 78-253 (516)
175 2p1m_B Transport inhibitor res 98.3 1.1E-07 3.6E-12 95.7 0.5 123 263-387 105-242 (594)
176 3uk6_A RUVB-like 2; hexameric 98.3 8.9E-06 3E-10 76.4 13.8 169 2-175 71-303 (368)
177 1a5t_A Delta prime, HOLB; zinc 98.3 1.8E-05 6.2E-10 73.3 15.6 147 3-173 26-203 (334)
178 4b4t_J 26S protease regulatory 98.3 1.5E-05 5.2E-10 74.5 14.8 137 4-168 185-354 (405)
179 3d8b_A Fidgetin-like protein 1 98.3 1.9E-05 6.5E-10 73.8 15.6 154 2-176 118-296 (357)
180 3b9p_A CG5977-PA, isoform A; A 98.3 2E-05 6.7E-10 71.7 15.4 152 2-175 55-233 (297)
181 2zan_A Vacuolar protein sortin 98.3 3.1E-05 1.1E-09 74.6 17.3 155 2-176 168-346 (444)
182 1sxj_E Activator 1 40 kDa subu 98.2 4.5E-06 1.6E-10 78.0 10.4 96 78-175 133-237 (354)
183 3cf0_A Transitional endoplasmi 98.2 2.5E-05 8.6E-10 71.2 14.3 145 2-169 50-222 (301)
184 1jbk_A CLPB protein; beta barr 98.2 1.5E-06 5.1E-11 73.3 5.5 125 2-139 44-194 (195)
185 3vfd_A Spastin; ATPase, microt 98.2 4.3E-05 1.5E-09 72.3 15.9 153 2-175 149-326 (389)
186 3syl_A Protein CBBX; photosynt 98.2 8.5E-06 2.9E-10 74.6 10.5 126 3-145 69-219 (309)
187 3pfi_A Holliday junction ATP-d 98.2 0.00025 8.5E-09 65.6 20.4 144 3-175 57-227 (338)
188 2ra8_A Uncharacterized protein 98.1 2.4E-06 8.3E-11 79.9 6.3 127 263-392 172-319 (362)
189 4b4t_L 26S protease subunit RP 98.1 2.7E-05 9.3E-10 74.0 13.2 139 3-168 217-387 (437)
190 4b4t_H 26S protease regulatory 98.1 2E-05 6.7E-10 74.8 12.1 140 2-168 244-415 (467)
191 1lv7_A FTSH; alpha/beta domain 98.1 0.00011 3.7E-09 65.2 15.6 150 3-174 47-224 (257)
192 3u61_B DNA polymerase accessor 98.1 3.4E-05 1.2E-09 71.1 12.7 149 2-173 49-214 (324)
193 4b4t_I 26S protease regulatory 98.0 2.3E-05 7.7E-10 73.7 10.8 138 3-168 218-388 (437)
194 3ec2_A DNA replication protein 98.0 6.3E-06 2.2E-10 69.0 6.5 99 2-116 39-144 (180)
195 1sxj_C Activator 1 40 kDa subu 98.0 5.5E-05 1.9E-09 70.2 13.5 151 4-171 49-208 (340)
196 2ra8_A Uncharacterized protein 98.0 2.2E-06 7.7E-11 80.1 3.6 150 263-424 139-315 (362)
197 4b4t_M 26S protease regulatory 98.0 2E-05 6.8E-10 74.8 9.7 137 3-167 217-386 (434)
198 1io0_A Tropomodulin; LRR prote 98.0 5.2E-06 1.8E-10 69.9 4.9 108 283-392 34-163 (185)
199 2w58_A DNAI, primosome compone 98.0 9.6E-06 3.3E-10 69.2 6.1 97 2-115 55-159 (202)
200 4fdw_A Leucine rich hypothetic 97.9 3.7E-05 1.3E-09 73.0 10.0 55 263-318 180-235 (401)
201 4b4t_K 26S protease regulatory 97.9 2.7E-05 9.4E-10 73.8 8.7 137 3-168 208-379 (428)
202 3t15_A Ribulose bisphosphate c 97.8 0.00033 1.1E-08 63.4 13.7 24 2-25 37-60 (293)
203 3rw6_A Nuclear RNA export fact 97.8 1.3E-05 4.3E-10 71.3 3.6 78 306-386 167-257 (267)
204 2ce7_A Cell division protein F 97.8 0.0004 1.4E-08 67.0 14.4 144 3-168 51-221 (476)
205 3hu3_A Transitional endoplasmi 97.8 0.00035 1.2E-08 67.9 13.9 151 3-175 240-415 (489)
206 2r62_A Cell division protease 97.7 1.8E-05 6.2E-10 70.8 4.4 143 4-168 47-218 (268)
207 4fdw_A Leucine rich hypothetic 97.7 0.00012 4.2E-09 69.4 10.3 121 263-391 157-282 (401)
208 4fcw_A Chaperone protein CLPB; 97.7 0.00022 7.4E-09 65.1 11.4 82 3-91 49-131 (311)
209 3rw6_A Nuclear RNA export fact 97.7 2.3E-05 7.9E-10 69.6 4.6 86 329-422 167-257 (267)
210 2kjq_A DNAA-related protein; s 97.7 2.1E-05 7.3E-10 63.5 3.4 38 2-41 37-74 (149)
211 1ofh_A ATP-dependent HSL prote 97.7 0.00052 1.8E-08 62.4 13.2 23 3-25 52-74 (310)
212 1ixz_A ATP-dependent metallopr 97.7 0.0014 4.7E-08 57.8 15.3 142 4-168 52-221 (254)
213 1io0_A Tropomodulin; LRR prote 97.7 3.7E-05 1.3E-09 64.6 4.6 112 303-424 30-159 (185)
214 2x8a_A Nuclear valosin-contain 97.6 0.0016 5.4E-08 58.2 15.3 119 4-144 47-192 (274)
215 3cf2_A TER ATPase, transitiona 97.6 0.00017 5.8E-09 73.7 9.8 142 3-168 240-407 (806)
216 1iy2_A ATP-dependent metallopr 97.6 0.0016 5.4E-08 58.4 15.3 142 4-168 76-245 (278)
217 2gno_A DNA polymerase III, gam 97.6 0.00076 2.6E-08 61.2 12.7 124 2-143 19-152 (305)
218 1in4_A RUVB, holliday junction 97.6 0.017 5.8E-07 53.1 21.6 51 123-175 173-223 (334)
219 2cvh_A DNA repair and recombin 97.5 0.00033 1.1E-08 60.3 9.2 84 2-91 21-117 (220)
220 3hr8_A Protein RECA; alpha and 97.5 0.0003 1E-08 65.1 9.2 83 2-91 62-151 (356)
221 2p65_A Hypothetical protein PF 97.5 0.00011 3.9E-09 61.2 6.0 24 3-26 45-68 (187)
222 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0023 7.8E-08 62.0 15.7 139 4-168 67-236 (499)
223 3pxg_A Negative regulator of g 97.5 0.00047 1.6E-08 66.8 10.9 123 3-145 203-340 (468)
224 3n70_A Transport activator; si 97.5 0.00018 6.1E-09 57.7 6.4 86 3-114 26-115 (145)
225 3io5_A Recombination and repai 97.5 0.00046 1.6E-08 62.1 9.2 84 3-91 30-123 (333)
226 3e4g_A ATP synthase subunit S, 97.5 5.4E-05 1.9E-09 62.4 2.9 87 284-371 60-154 (176)
227 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00012 4.1E-09 66.2 5.3 71 2-91 124-194 (331)
228 1qvr_A CLPB protein; coiled co 97.4 0.00028 9.7E-09 73.7 8.4 149 3-164 193-368 (854)
229 2zr9_A Protein RECA, recombina 97.4 0.00047 1.6E-08 63.9 8.8 83 2-91 62-151 (349)
230 1xp8_A RECA protein, recombina 97.4 0.00053 1.8E-08 63.9 9.2 83 2-91 75-164 (366)
231 1u94_A RECA protein, recombina 97.4 0.00048 1.6E-08 63.9 8.6 83 2-91 64-153 (356)
232 2c9o_A RUVB-like 1; hexameric 97.4 0.0017 5.8E-08 62.6 12.9 51 120-172 356-407 (456)
233 2z43_A DNA repair and recombin 97.4 0.00073 2.5E-08 62.1 9.6 89 2-91 108-215 (324)
234 3e4g_A ATP synthase subunit S, 97.3 0.00019 6.5E-09 59.1 4.8 80 310-391 62-150 (176)
235 1n0w_A DNA repair protein RAD5 97.3 0.0015 5.2E-08 57.0 11.1 89 2-91 25-131 (243)
236 3m6a_A ATP-dependent protease 97.3 0.0012 4.1E-08 65.1 11.0 131 2-143 109-266 (543)
237 1v5w_A DMC1, meiotic recombina 97.3 0.0014 4.6E-08 60.7 10.4 55 2-57 123-181 (343)
238 3pxi_A Negative regulator of g 97.3 0.0012 4.2E-08 68.0 11.1 123 3-145 203-340 (758)
239 3pxi_A Negative regulator of g 97.2 0.0013 4.3E-08 67.9 11.0 121 3-143 523-675 (758)
240 1ojl_A Transcriptional regulat 97.2 0.0022 7.7E-08 58.2 11.3 23 3-25 27-49 (304)
241 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00088 3E-08 58.1 7.8 109 2-115 24-168 (235)
242 2bjv_A PSP operon transcriptio 97.2 0.00095 3.2E-08 59.3 8.1 38 3-42 31-68 (265)
243 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0047 1.6E-07 63.7 14.2 128 3-143 209-362 (758)
244 3co5_A Putative two-component 97.1 0.00023 8E-09 56.8 3.2 23 3-25 29-51 (143)
245 2i1q_A DNA repair and recombin 97.1 0.0016 5.5E-08 59.7 9.0 89 2-91 99-216 (322)
246 3kb2_A SPBC2 prophage-derived 97.0 0.00042 1.4E-08 57.0 3.6 25 1-25 1-25 (173)
247 2b8t_A Thymidine kinase; deoxy 97.0 0.00026 9E-09 60.9 2.2 109 2-117 13-128 (223)
248 1g5t_A COB(I)alamin adenosyltr 97.0 0.00066 2.3E-08 56.8 4.5 122 3-128 30-178 (196)
249 2qgz_A Helicase loader, putati 97.0 0.00069 2.3E-08 61.7 5.0 37 2-39 153-189 (308)
250 3lda_A DNA repair protein RAD5 96.9 0.0029 1E-07 59.5 9.4 56 2-58 179-238 (400)
251 1ypw_A Transitional endoplasmi 96.9 0.0062 2.1E-07 63.0 11.8 143 3-168 240-407 (806)
252 1jr3_D DNA polymerase III, del 96.9 0.025 8.5E-07 52.1 14.8 151 2-174 19-184 (343)
253 3cf2_A TER ATPase, transitiona 96.8 0.0019 6.5E-08 66.0 7.6 140 4-167 514-682 (806)
254 3sr0_A Adenylate kinase; phosp 96.8 0.0047 1.6E-07 52.5 8.4 75 3-91 2-86 (206)
255 1nks_A Adenylate kinase; therm 96.8 0.00082 2.8E-08 56.4 3.6 26 1-26 1-26 (194)
256 3bh0_A DNAB-like replicative h 96.7 0.0079 2.7E-07 54.9 10.0 50 2-55 69-118 (315)
257 1qhx_A CPT, protein (chloramph 96.7 0.0011 3.6E-08 55.0 3.6 24 2-25 4-27 (178)
258 2ze6_A Isopentenyl transferase 96.6 0.0011 3.9E-08 58.4 3.8 25 1-25 1-25 (253)
259 3dm5_A SRP54, signal recogniti 96.6 0.0061 2.1E-07 57.8 8.7 25 2-26 101-125 (443)
260 1pzn_A RAD51, DNA repair and r 96.6 0.0061 2.1E-07 56.4 8.6 89 2-91 132-243 (349)
261 3vaa_A Shikimate kinase, SK; s 96.6 0.0014 4.8E-08 55.5 3.9 24 2-25 26-49 (199)
262 1ex7_A Guanylate kinase; subst 96.6 0.0012 3.9E-08 55.2 3.2 24 2-25 2-25 (186)
263 1zuh_A Shikimate kinase; alpha 96.6 0.0014 5E-08 53.6 3.7 25 1-25 7-31 (168)
264 1via_A Shikimate kinase; struc 96.5 0.0013 4.3E-08 54.4 3.3 25 1-25 4-28 (175)
265 3t61_A Gluconokinase; PSI-biol 96.5 0.0013 4.4E-08 55.8 3.3 24 2-25 19-42 (202)
266 1vma_A Cell division protein F 96.5 0.006 2E-07 55.2 7.9 38 2-41 105-142 (306)
267 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.6E-08 54.2 3.8 24 2-25 6-29 (185)
268 2px0_A Flagellar biosynthesis 96.5 0.011 3.8E-07 53.3 9.5 39 2-41 106-144 (296)
269 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0053 1.8E-07 63.3 8.3 35 3-42 490-524 (758)
270 1fx0_B ATP synthase beta chain 96.5 0.008 2.7E-07 57.4 8.8 87 3-90 167-277 (498)
271 2ck3_D ATP synthase subunit be 96.5 0.01 3.5E-07 56.5 9.3 87 3-90 155-264 (482)
272 3cmu_A Protein RECA, recombina 96.5 0.0059 2E-07 68.0 8.8 81 2-89 1428-1515(2050)
273 1kgd_A CASK, peripheral plasma 96.5 0.0016 5.5E-08 54.1 3.5 24 2-25 6-29 (180)
274 3lw7_A Adenylate kinase relate 96.4 0.0018 6E-08 53.3 3.5 23 2-25 2-24 (179)
275 1j8m_F SRP54, signal recogniti 96.4 0.0082 2.8E-07 54.1 8.2 88 2-91 99-192 (297)
276 1qvr_A CLPB protein; coiled co 96.4 0.0041 1.4E-07 65.0 7.0 38 3-42 590-627 (854)
277 1e6c_A Shikimate kinase; phosp 96.4 0.0018 6.1E-08 53.3 3.4 25 1-25 2-26 (173)
278 1sky_E F1-ATPase, F1-ATP synth 96.4 0.008 2.7E-07 57.3 8.2 87 3-90 153-256 (473)
279 1ly1_A Polynucleotide kinase; 96.4 0.0019 6.4E-08 53.5 3.5 22 2-23 3-24 (181)
280 3kl4_A SRP54, signal recogniti 96.4 0.0085 2.9E-07 56.8 8.3 38 2-41 98-135 (433)
281 2if2_A Dephospho-COA kinase; a 96.4 0.0018 6.3E-08 54.9 3.5 23 1-23 1-23 (204)
282 2xxa_A Signal recognition part 96.4 0.014 4.8E-07 55.5 9.9 40 2-42 101-140 (433)
283 1kag_A SKI, shikimate kinase I 96.4 0.0018 6.2E-08 53.3 3.3 24 2-25 5-28 (173)
284 2ffh_A Protein (FFH); SRP54, s 96.3 0.015 5.1E-07 55.0 9.5 38 2-41 99-136 (425)
285 3hjn_A DTMP kinase, thymidylat 96.3 0.011 3.7E-07 49.8 7.8 24 3-26 2-25 (197)
286 1kht_A Adenylate kinase; phosp 96.3 0.0024 8.3E-08 53.4 3.7 25 2-26 4-28 (192)
287 1zp6_A Hypothetical protein AT 96.3 0.0021 7.3E-08 53.8 3.1 24 2-25 10-33 (191)
288 3tau_A Guanylate kinase, GMP k 96.3 0.0025 8.6E-08 54.3 3.5 24 2-25 9-32 (208)
289 2q6t_A DNAB replication FORK h 96.3 0.015 5.2E-07 55.7 9.4 51 2-55 201-251 (444)
290 3uie_A Adenylyl-sulfate kinase 96.3 0.0027 9.1E-08 53.8 3.6 25 2-26 26-50 (200)
291 1xjc_A MOBB protein homolog; s 96.2 0.0032 1.1E-07 51.5 3.9 26 1-26 4-29 (169)
292 3iij_A Coilin-interacting nucl 96.2 0.0024 8.2E-08 52.9 3.2 24 2-25 12-35 (180)
293 3ice_A Transcription terminati 96.2 0.0031 1.1E-07 58.3 4.2 89 2-91 175-273 (422)
294 3a00_A Guanylate kinase, GMP k 96.2 0.0022 7.7E-08 53.5 3.0 24 2-25 2-25 (186)
295 4a1f_A DNAB helicase, replicat 96.2 0.013 4.4E-07 53.7 8.2 51 2-56 47-97 (338)
296 1ukz_A Uridylate kinase; trans 96.2 0.0029 1E-07 53.6 3.7 25 1-25 15-39 (203)
297 3tr0_A Guanylate kinase, GMP k 96.2 0.0028 9.4E-08 53.7 3.5 24 2-25 8-31 (205)
298 4eun_A Thermoresistant glucoki 96.2 0.003 1E-07 53.4 3.7 24 2-25 30-53 (200)
299 2qor_A Guanylate kinase; phosp 96.2 0.0025 8.4E-08 54.2 3.2 24 2-25 13-36 (204)
300 4gt6_A Cell surface protein; l 96.2 0.016 5.3E-07 54.7 9.0 105 281-391 261-368 (394)
301 1q57_A DNA primase/helicase; d 96.2 0.02 7E-07 55.8 10.0 51 2-55 243-293 (503)
302 3cmw_A Protein RECA, recombina 96.2 0.01 3.5E-07 65.3 8.3 82 2-90 1432-1520(1706)
303 2rhm_A Putative kinase; P-loop 96.2 0.003 1E-07 52.9 3.4 24 2-25 6-29 (193)
304 3ney_A 55 kDa erythrocyte memb 96.1 0.0034 1.2E-07 52.8 3.6 24 2-25 20-43 (197)
305 3cmu_A Protein RECA, recombina 96.1 0.012 4.1E-07 65.7 8.8 83 2-91 384-473 (2050)
306 2plr_A DTMP kinase, probable t 96.1 0.009 3.1E-07 50.7 6.3 25 2-26 5-29 (213)
307 1knq_A Gluconate kinase; ALFA/ 96.1 0.0035 1.2E-07 51.6 3.6 24 2-25 9-32 (175)
308 3vr4_D V-type sodium ATPase su 96.1 0.0075 2.6E-07 57.0 6.1 87 4-90 154-259 (465)
309 2jaq_A Deoxyguanosine kinase; 96.1 0.0037 1.3E-07 52.8 3.7 24 3-26 2-25 (205)
310 1jjv_A Dephospho-COA kinase; P 96.1 0.0034 1.2E-07 53.3 3.4 22 2-23 3-24 (206)
311 2iyv_A Shikimate kinase, SK; t 96.1 0.0031 1.1E-07 52.4 3.1 24 2-25 3-26 (184)
312 1ls1_A Signal recognition part 96.1 0.022 7.4E-07 51.3 8.9 85 2-88 99-189 (295)
313 2vli_A Antibiotic resistance p 96.1 0.0029 9.8E-08 52.5 2.8 24 2-25 6-29 (183)
314 1tev_A UMP-CMP kinase; ploop, 96.1 0.0039 1.3E-07 52.2 3.7 24 2-25 4-27 (196)
315 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0039 1.3E-07 55.2 3.8 25 1-25 4-28 (260)
316 2c95_A Adenylate kinase 1; tra 96.1 0.0038 1.3E-07 52.4 3.6 24 2-25 10-33 (196)
317 3cmw_A Protein RECA, recombina 96.0 0.013 4.4E-07 64.6 8.5 83 2-91 384-473 (1706)
318 2bwj_A Adenylate kinase 5; pho 96.0 0.0037 1.3E-07 52.6 3.5 24 2-25 13-36 (199)
319 3c8u_A Fructokinase; YP_612366 96.0 0.0033 1.1E-07 53.5 3.2 25 2-26 23-47 (208)
320 2bdt_A BH3686; alpha-beta prot 96.0 0.0038 1.3E-07 52.2 3.5 22 2-23 3-24 (189)
321 1qf9_A UMP/CMP kinase, protein 96.0 0.004 1.4E-07 52.1 3.6 24 2-25 7-30 (194)
322 2j41_A Guanylate kinase; GMP, 96.0 0.0038 1.3E-07 52.9 3.5 24 2-25 7-30 (207)
323 1lvg_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 53.0 3.1 24 2-25 5-28 (198)
324 3rfe_A Platelet glycoprotein I 96.0 0.011 3.6E-07 46.2 5.7 53 313-369 12-67 (130)
325 3cm0_A Adenylate kinase; ATP-b 96.0 0.0044 1.5E-07 51.6 3.7 23 3-25 6-28 (186)
326 1y63_A LMAJ004144AAA protein; 96.0 0.0043 1.5E-07 51.7 3.6 23 2-24 11-33 (184)
327 1cke_A CK, MSSA, protein (cyti 96.0 0.0044 1.5E-07 53.4 3.7 24 2-25 6-29 (227)
328 2bbw_A Adenylate kinase 4, AK4 95.9 0.0047 1.6E-07 54.1 3.9 24 2-25 28-51 (246)
329 3umf_A Adenylate kinase; rossm 95.9 0.0049 1.7E-07 52.7 3.7 24 2-25 30-53 (217)
330 2z0h_A DTMP kinase, thymidylat 95.9 0.01 3.6E-07 49.7 5.8 24 3-26 2-25 (197)
331 4a74_A DNA repair and recombin 95.9 0.018 6.2E-07 49.5 7.5 44 2-45 26-73 (231)
332 4akg_A Glutathione S-transfera 95.9 0.072 2.5E-06 61.6 14.0 133 3-144 1269-1432(2695)
333 2f1r_A Molybdopterin-guanine d 95.9 0.003 1E-07 51.9 2.3 38 1-38 2-39 (171)
334 1ye8_A Protein THEP1, hypothet 95.9 0.0046 1.6E-07 51.2 3.4 24 3-26 2-25 (178)
335 1zd8_A GTP:AMP phosphotransfer 95.9 0.0046 1.6E-07 53.4 3.5 24 2-25 8-31 (227)
336 4h09_A Hypothetical leucine ri 95.9 0.021 7.2E-07 53.3 8.4 123 263-390 217-343 (379)
337 2pbr_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 51.6 3.6 23 3-25 2-24 (195)
338 1np6_A Molybdopterin-guanine d 95.9 0.0057 2E-07 50.4 3.9 26 1-26 6-31 (174)
339 2cdn_A Adenylate kinase; phosp 95.9 0.0051 1.7E-07 52.0 3.7 23 3-25 22-44 (201)
340 3asz_A Uridine kinase; cytidin 95.9 0.0043 1.5E-07 52.8 3.2 24 2-25 7-30 (211)
341 2pt5_A Shikimate kinase, SK; a 95.9 0.0055 1.9E-07 50.0 3.7 23 3-25 2-24 (168)
342 3e70_C DPA, signal recognition 95.9 0.028 9.5E-07 51.4 8.7 54 2-57 130-184 (328)
343 4gp7_A Metallophosphoesterase; 95.8 0.0043 1.5E-07 51.0 2.9 21 2-22 10-30 (171)
344 2wwf_A Thymidilate kinase, put 95.8 0.0051 1.8E-07 52.3 3.4 25 2-26 11-35 (212)
345 2yvu_A Probable adenylyl-sulfa 95.8 0.0058 2E-07 50.9 3.7 25 2-26 14-38 (186)
346 4fs7_A Uncharacterized protein 95.8 0.033 1.1E-06 52.4 9.3 84 302-390 290-376 (394)
347 3fb4_A Adenylate kinase; psych 95.8 0.0057 2E-07 52.3 3.6 23 3-25 2-24 (216)
348 1znw_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 52.2 3.3 24 2-25 21-44 (207)
349 2grj_A Dephospho-COA kinase; T 95.8 0.0062 2.1E-07 51.1 3.6 23 3-25 14-36 (192)
350 1s96_A Guanylate kinase, GMP k 95.7 0.006 2.1E-07 52.4 3.5 25 2-26 17-41 (219)
351 1zak_A Adenylate kinase; ATP:A 95.7 0.0051 1.7E-07 52.9 3.1 24 2-25 6-29 (222)
352 1z6g_A Guanylate kinase; struc 95.7 0.0048 1.7E-07 53.0 2.9 24 2-25 24-47 (218)
353 2qt1_A Nicotinamide riboside k 95.7 0.0053 1.8E-07 52.1 3.2 24 2-25 22-45 (207)
354 1nn5_A Similar to deoxythymidy 95.7 0.0059 2E-07 52.0 3.4 25 2-26 10-34 (215)
355 2r6a_A DNAB helicase, replicat 95.7 0.022 7.4E-07 54.8 7.7 49 2-53 204-252 (454)
356 2jeo_A Uridine-cytidine kinase 95.7 0.006 2.1E-07 53.4 3.4 24 2-25 26-49 (245)
357 3dl0_A Adenylate kinase; phosp 95.7 0.0064 2.2E-07 52.0 3.5 23 3-25 2-24 (216)
358 2v54_A DTMP kinase, thymidylat 95.7 0.0063 2.2E-07 51.4 3.5 24 2-25 5-28 (204)
359 1uj2_A Uridine-cytidine kinase 95.7 0.0069 2.4E-07 53.3 3.8 24 2-25 23-46 (252)
360 1aky_A Adenylate kinase; ATP:A 95.7 0.0073 2.5E-07 51.8 3.9 24 2-25 5-28 (220)
361 1htw_A HI0065; nucleotide-bind 95.7 0.0067 2.3E-07 49.1 3.3 24 2-25 34-57 (158)
362 1uf9_A TT1252 protein; P-loop, 95.7 0.0066 2.2E-07 51.2 3.4 23 2-24 9-31 (203)
363 4e22_A Cytidylate kinase; P-lo 95.6 0.0071 2.4E-07 53.2 3.7 24 2-25 28-51 (252)
364 3fwy_A Light-independent proto 95.6 0.01 3.5E-07 53.9 4.8 38 2-41 49-86 (314)
365 1gtv_A TMK, thymidylate kinase 95.6 0.0032 1.1E-07 53.7 1.4 25 2-26 1-25 (214)
366 1gvn_B Zeta; postsegregational 95.6 0.0064 2.2E-07 54.6 3.4 24 2-25 34-57 (287)
367 3jvv_A Twitching mobility prot 95.6 0.0018 6.2E-08 60.0 -0.3 111 2-118 124-234 (356)
368 1cp2_A CP2, nitrogenase iron p 95.6 0.014 4.7E-07 51.8 5.5 39 1-41 1-39 (269)
369 1rz3_A Hypothetical protein rb 95.6 0.0068 2.3E-07 51.3 3.3 24 2-25 23-46 (201)
370 4h09_A Hypothetical leucine ri 95.6 0.053 1.8E-06 50.6 9.7 104 282-390 214-320 (379)
371 3zvl_A Bifunctional polynucleo 95.5 0.031 1.1E-06 53.0 8.0 24 2-25 259-282 (416)
372 1odf_A YGR205W, hypothetical 3 95.5 0.0079 2.7E-07 54.0 3.7 25 2-26 32-56 (290)
373 3tlx_A Adenylate kinase 2; str 95.5 0.0083 2.8E-07 52.4 3.7 24 2-25 30-53 (243)
374 2c61_A A-type ATP synthase non 95.5 0.017 5.7E-07 55.0 5.9 86 4-89 155-259 (469)
375 3rfe_A Platelet glycoprotein I 95.5 0.026 8.9E-07 43.9 6.1 54 267-321 12-67 (130)
376 3ake_A Cytidylate kinase; CMP 95.5 0.0086 2.9E-07 50.7 3.7 23 3-25 4-26 (208)
377 3tqc_A Pantothenate kinase; bi 95.5 0.04 1.4E-06 50.0 8.2 39 3-41 94-132 (321)
378 3aez_A Pantothenate kinase; tr 95.5 0.0077 2.6E-07 54.8 3.4 40 2-41 91-130 (312)
379 2pez_A Bifunctional 3'-phospho 95.5 0.0095 3.3E-07 49.2 3.7 25 2-26 6-30 (179)
380 3d3q_A TRNA delta(2)-isopenten 95.5 0.0086 3E-07 54.7 3.6 23 3-25 9-31 (340)
381 3bgw_A DNAB-like replicative h 95.5 0.039 1.3E-06 52.7 8.4 49 2-54 198-246 (444)
382 1rj9_A FTSY, signal recognitio 95.4 0.013 4.3E-07 53.1 4.6 25 2-26 103-127 (304)
383 1m7g_A Adenylylsulfate kinase; 95.4 0.0094 3.2E-07 50.8 3.6 25 2-26 26-50 (211)
384 3lnc_A Guanylate kinase, GMP k 95.4 0.0054 1.9E-07 53.1 2.1 24 2-25 28-52 (231)
385 2dr3_A UPF0273 protein PH0284; 95.4 0.011 3.8E-07 51.4 4.2 38 2-41 24-61 (247)
386 3r20_A Cytidylate kinase; stru 95.4 0.01 3.4E-07 51.3 3.7 23 3-25 11-33 (233)
387 3be4_A Adenylate kinase; malar 95.4 0.0098 3.4E-07 50.9 3.6 24 2-25 6-29 (217)
388 4dzz_A Plasmid partitioning pr 95.4 0.014 4.9E-07 49.2 4.6 45 1-47 1-46 (206)
389 2ehv_A Hypothetical protein PH 95.4 0.0088 3E-07 52.3 3.4 22 2-23 31-52 (251)
390 1ak2_A Adenylate kinase isoenz 95.4 0.011 3.7E-07 51.3 3.9 24 2-25 17-40 (233)
391 2xb4_A Adenylate kinase; ATP-b 95.4 0.01 3.5E-07 51.1 3.7 23 3-25 2-24 (223)
392 2i3b_A HCR-ntpase, human cance 95.4 0.0095 3.2E-07 49.8 3.3 25 2-26 2-26 (189)
393 3exa_A TRNA delta(2)-isopenten 95.3 0.01 3.4E-07 53.5 3.5 24 2-25 4-27 (322)
394 3gqb_B V-type ATP synthase bet 95.3 0.017 5.8E-07 54.6 5.2 87 4-90 150-262 (464)
395 3crm_A TRNA delta(2)-isopenten 95.3 0.01 3.6E-07 53.8 3.6 24 2-25 6-29 (323)
396 1vht_A Dephospho-COA kinase; s 95.3 0.01 3.6E-07 50.7 3.5 22 2-23 5-26 (218)
397 4eaq_A DTMP kinase, thymidylat 95.3 0.023 8E-07 49.0 5.7 25 2-26 27-51 (229)
398 4gt6_A Cell surface protein; l 95.3 0.048 1.6E-06 51.3 8.4 122 263-391 265-389 (394)
399 1sq5_A Pantothenate kinase; P- 95.2 0.025 8.7E-07 51.3 6.1 40 2-41 81-120 (308)
400 1e4v_A Adenylate kinase; trans 95.2 0.011 3.8E-07 50.4 3.4 23 3-25 2-24 (214)
401 2afh_E Nitrogenase iron protei 95.2 0.018 6.1E-07 51.7 4.8 40 1-42 2-41 (289)
402 2f6r_A COA synthase, bifunctio 95.2 0.011 3.7E-07 53.0 3.3 22 2-23 76-97 (281)
403 3tif_A Uncharacterized ABC tra 95.2 0.01 3.5E-07 51.6 3.0 24 2-25 32-55 (235)
404 2dyk_A GTP-binding protein; GT 95.2 0.013 4.4E-07 47.1 3.4 25 1-25 1-25 (161)
405 1cr0_A DNA primase/helicase; R 95.2 0.029 9.8E-07 50.5 6.1 50 2-54 36-85 (296)
406 3a8t_A Adenylate isopentenyltr 95.1 0.011 3.8E-07 53.9 3.2 24 2-25 41-64 (339)
407 3foz_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 52.6 3.6 24 2-25 11-34 (316)
408 3nwj_A ATSK2; P loop, shikimat 95.1 0.012 4E-07 51.7 3.2 24 2-25 49-72 (250)
409 2onk_A Molybdate/tungstate ABC 95.1 0.012 4.3E-07 51.2 3.4 24 2-25 25-48 (240)
410 2p5t_B PEZT; postsegregational 95.1 0.0089 3E-07 52.6 2.5 24 2-25 33-56 (253)
411 2pcj_A ABC transporter, lipopr 95.1 0.011 3.6E-07 51.0 2.8 24 2-25 31-54 (224)
412 3b85_A Phosphate starvation-in 95.1 0.01 3.6E-07 50.4 2.7 23 2-24 23-45 (208)
413 1a7j_A Phosphoribulokinase; tr 95.1 0.0073 2.5E-07 54.3 1.8 24 2-25 6-29 (290)
414 3b9q_A Chloroplast SRP recepto 95.0 0.016 5.5E-07 52.3 4.0 25 2-26 101-125 (302)
415 1tue_A Replication protein E1; 95.0 0.012 4E-07 49.5 2.8 23 3-25 60-82 (212)
416 2hf9_A Probable hydrogenase ni 95.0 0.015 5E-07 50.0 3.5 24 2-25 39-62 (226)
417 4hlc_A DTMP kinase, thymidylat 95.0 0.037 1.3E-06 46.8 5.9 25 2-26 3-27 (205)
418 1nlf_A Regulatory protein REPA 95.0 0.023 7.9E-07 50.7 4.9 25 2-26 31-55 (279)
419 4tmk_A Protein (thymidylate ki 95.0 0.04 1.4E-06 46.9 6.1 25 2-26 4-28 (213)
420 2qmh_A HPR kinase/phosphorylas 95.0 0.013 4.6E-07 48.8 3.0 24 2-25 35-58 (205)
421 2cbz_A Multidrug resistance-as 94.9 0.013 4.4E-07 51.0 3.0 24 2-25 32-55 (237)
422 1b0u_A Histidine permease; ABC 94.9 0.013 4.5E-07 51.8 3.1 24 2-25 33-56 (262)
423 4edh_A DTMP kinase, thymidylat 94.9 0.048 1.6E-06 46.5 6.5 31 2-33 7-37 (213)
424 3end_A Light-independent proto 94.9 0.023 8E-07 51.4 4.8 40 1-42 41-80 (307)
425 1zu4_A FTSY; GTPase, signal re 94.9 0.02 6.7E-07 52.2 4.2 38 2-41 106-143 (320)
426 3lv8_A DTMP kinase, thymidylat 94.9 0.039 1.3E-06 47.8 5.9 35 2-37 28-62 (236)
427 2j37_W Signal recognition part 94.9 0.12 4.1E-06 50.0 9.9 38 2-41 102-139 (504)
428 3gfo_A Cobalt import ATP-bindi 94.9 0.014 4.7E-07 52.0 3.1 24 2-25 35-58 (275)
429 1ltq_A Polynucleotide kinase; 94.9 0.015 5.3E-07 52.4 3.5 24 2-25 3-26 (301)
430 1sgw_A Putative ABC transporte 94.9 0.012 4.2E-07 50.2 2.6 24 2-25 36-59 (214)
431 2wsm_A Hydrogenase expression/ 94.8 0.017 5.9E-07 49.4 3.6 25 1-25 30-54 (221)
432 2yhs_A FTSY, cell division pro 94.8 0.078 2.7E-06 50.9 8.3 25 2-26 294-318 (503)
433 2d2e_A SUFC protein; ABC-ATPas 94.8 0.016 5.4E-07 50.8 3.3 23 2-24 30-52 (250)
434 1g6h_A High-affinity branched- 94.8 0.014 4.9E-07 51.4 3.0 24 2-25 34-57 (257)
435 2pze_A Cystic fibrosis transme 94.8 0.015 5.1E-07 50.3 3.1 24 2-25 35-58 (229)
436 1ji0_A ABC transporter; ATP bi 94.8 0.015 5E-07 50.7 3.0 24 2-25 33-56 (240)
437 2olj_A Amino acid ABC transpor 94.8 0.015 5.1E-07 51.4 3.1 24 2-25 51-74 (263)
438 4g1u_C Hemin import ATP-bindin 94.8 0.015 5.1E-07 51.5 3.1 24 2-25 38-61 (266)
439 3v9p_A DTMP kinase, thymidylat 94.8 0.041 1.4E-06 47.3 5.7 25 2-26 26-50 (227)
440 2zu0_C Probable ATP-dependent 94.8 0.017 5.9E-07 51.2 3.4 23 2-24 47-69 (267)
441 2r8r_A Sensor protein; KDPD, P 94.7 0.038 1.3E-06 47.2 5.3 38 3-42 8-45 (228)
442 2ff7_A Alpha-hemolysin translo 94.7 0.016 5.3E-07 50.8 3.0 24 2-25 36-59 (247)
443 1mv5_A LMRA, multidrug resista 94.7 0.016 5.5E-07 50.6 3.1 24 2-25 29-52 (243)
444 1vpl_A ABC transporter, ATP-bi 94.7 0.016 5.6E-07 50.9 3.1 24 2-25 42-65 (256)
445 1oix_A RAS-related protein RAB 94.7 0.019 6.5E-07 47.9 3.3 23 3-25 31-53 (191)
446 2eyu_A Twitching motility prot 94.6 0.02 6.8E-07 50.6 3.5 109 2-117 26-135 (261)
447 3l0o_A Transcription terminati 94.6 0.071 2.4E-06 49.3 7.2 38 3-41 177-215 (427)
448 2qi9_C Vitamin B12 import ATP- 94.6 0.018 6.1E-07 50.5 3.1 24 2-25 27-50 (249)
449 2og2_A Putative signal recogni 94.6 0.023 7.8E-07 52.5 4.0 25 2-26 158-182 (359)
450 2ghi_A Transport protein; mult 94.6 0.017 5.9E-07 50.9 3.0 24 2-25 47-70 (260)
451 2ixe_A Antigen peptide transpo 94.6 0.017 5.9E-07 51.3 3.0 24 2-25 46-69 (271)
452 3hws_A ATP-dependent CLP prote 94.6 0.019 6.6E-07 53.4 3.5 23 3-25 53-75 (363)
453 3eph_A TRNA isopentenyltransfe 94.6 0.02 6.7E-07 53.5 3.4 24 2-25 3-26 (409)
454 3mfy_A V-type ATP synthase alp 94.6 0.063 2.2E-06 51.9 6.9 46 3-52 229-275 (588)
455 2ihy_A ABC transporter, ATP-bi 94.5 0.019 6.4E-07 51.2 3.1 24 2-25 48-71 (279)
456 2yz2_A Putative ABC transporte 94.5 0.019 6.4E-07 50.9 3.0 24 2-25 34-57 (266)
457 2nq2_C Hypothetical ABC transp 94.5 0.019 6.4E-07 50.4 3.0 24 2-25 32-55 (253)
458 3oaa_A ATP synthase subunit al 94.5 0.096 3.3E-06 50.0 8.0 84 3-90 164-265 (513)
459 2v9p_A Replication protein E1; 94.5 0.021 7.1E-07 51.5 3.3 24 2-25 127-150 (305)
460 3llm_A ATP-dependent RNA helic 94.5 0.093 3.2E-06 45.3 7.4 23 2-24 77-99 (235)
461 2ocp_A DGK, deoxyguanosine kin 94.5 0.022 7.6E-07 49.6 3.3 24 2-25 3-26 (241)
462 2r9v_A ATP synthase subunit al 94.4 0.054 1.8E-06 51.9 6.1 84 3-90 177-278 (515)
463 2zej_A Dardarin, leucine-rich 94.4 0.02 6.9E-07 47.4 2.8 22 3-24 4-25 (184)
464 2wji_A Ferrous iron transport 94.4 0.025 8.5E-07 45.8 3.3 22 3-24 5-26 (165)
465 2f9l_A RAB11B, member RAS onco 94.4 0.026 8.8E-07 47.4 3.5 23 3-25 7-29 (199)
466 1um8_A ATP-dependent CLP prote 94.3 0.023 8E-07 53.1 3.4 23 3-25 74-96 (376)
467 2vp4_A Deoxynucleoside kinase; 94.3 0.017 5.9E-07 49.9 2.2 23 2-24 21-43 (230)
468 1svm_A Large T antigen; AAA+ f 94.3 0.026 8.8E-07 52.6 3.5 24 2-25 170-193 (377)
469 4fs7_A Uncharacterized protein 94.3 0.19 6.4E-06 47.1 9.6 120 263-390 230-353 (394)
470 1q3t_A Cytidylate kinase; nucl 94.3 0.029 1E-06 48.6 3.7 24 2-25 17-40 (236)
471 3iqw_A Tail-anchored protein t 94.2 0.072 2.5E-06 48.8 6.4 45 2-48 17-61 (334)
472 1yrb_A ATP(GTP)binding protein 94.2 0.067 2.3E-06 47.0 6.0 25 2-26 15-39 (262)
473 2pjz_A Hypothetical protein ST 94.2 0.024 8.3E-07 50.0 3.1 23 2-24 31-53 (263)
474 3vr4_A V-type sodium ATPase ca 94.2 0.094 3.2E-06 50.9 7.2 46 3-52 234-280 (600)
475 3kjh_A CO dehydrogenase/acetyl 94.1 0.059 2E-06 46.9 5.4 43 1-46 1-43 (254)
476 1p5z_B DCK, deoxycytidine kina 94.1 0.017 6E-07 51.0 1.9 24 2-25 25-48 (263)
477 2qe7_A ATP synthase subunit al 94.1 0.089 3E-06 50.3 6.7 84 3-90 164-265 (502)
478 1nij_A Hypothetical protein YJ 94.1 0.019 6.6E-07 52.3 2.1 25 1-25 4-28 (318)
479 3fvq_A Fe(3+) IONS import ATP- 94.0 0.027 9.3E-07 52.0 3.1 24 2-25 31-54 (359)
480 3nh6_A ATP-binding cassette SU 94.0 0.024 8.2E-07 51.2 2.7 24 2-25 81-104 (306)
481 2orw_A Thymidine kinase; TMTK, 94.0 0.035 1.2E-06 46.1 3.4 25 2-26 4-28 (184)
482 3io3_A DEHA2D07832P; chaperone 94.0 0.074 2.5E-06 49.0 5.9 46 2-47 19-64 (348)
483 2zts_A Putative uncharacterize 94.0 0.034 1.2E-06 48.4 3.5 48 2-52 31-78 (251)
484 2wjg_A FEOB, ferrous iron tran 93.9 0.033 1.1E-06 46.0 3.2 22 3-24 9-30 (188)
485 2ce2_X GTPase HRAS; signaling 93.9 0.029 1E-06 44.9 2.8 23 3-25 5-27 (166)
486 2r44_A Uncharacterized protein 93.9 0.026 9.1E-07 51.6 2.8 125 3-145 48-200 (331)
487 3vkg_A Dynein heavy chain, cyt 93.9 0.32 1.1E-05 57.0 11.9 77 3-90 1306-1385(3245)
488 1z47_A CYSA, putative ABC-tran 93.9 0.033 1.1E-06 51.4 3.3 24 2-25 42-65 (355)
489 2bbs_A Cystic fibrosis transme 93.9 0.028 9.4E-07 50.4 2.8 24 2-25 65-88 (290)
490 1z2a_A RAS-related protein RAB 93.9 0.035 1.2E-06 44.8 3.2 23 3-25 7-29 (168)
491 3sop_A Neuronal-specific septi 93.9 0.031 1.1E-06 49.6 3.0 23 3-25 4-26 (270)
492 3rlf_A Maltose/maltodextrin im 93.8 0.036 1.2E-06 51.6 3.4 24 2-25 30-53 (381)
493 2it1_A 362AA long hypothetical 93.8 0.036 1.2E-06 51.3 3.4 24 2-25 30-53 (362)
494 3tui_C Methionine import ATP-b 93.8 0.036 1.2E-06 51.2 3.4 24 2-25 55-78 (366)
495 1r8s_A ADP-ribosylation factor 93.7 0.04 1.4E-06 44.2 3.3 22 4-25 3-24 (164)
496 2yyz_A Sugar ABC transporter, 93.7 0.036 1.2E-06 51.2 3.3 24 2-25 30-53 (359)
497 2ged_A SR-beta, signal recogni 93.7 0.036 1.2E-06 46.1 3.1 23 3-25 50-72 (193)
498 3cwq_A Para family chromosome 93.7 0.097 3.3E-06 44.3 5.9 43 3-48 2-45 (209)
499 2h92_A Cytidylate kinase; ross 93.7 0.037 1.3E-06 47.2 3.2 23 3-25 5-27 (219)
500 2nzj_A GTP-binding protein REM 93.7 0.037 1.3E-06 45.0 3.1 23 3-25 6-28 (175)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.3e-36 Score=297.27 Aligned_cols=240 Identities=19% Similarity=0.204 Sum_probs=190.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH--hhccCCCCceEEEEEeccCC--CHHHHHHHHHHHhcccc--------cccChhHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHH--SIGESRRFDIIFWENINTDG--NIRDIQEIILERLKVNA--------KELNNDLR 68 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~--------~~~~~~~~ 68 (424)
+++|+|+|+||+||||||+++|+ +..+..+|++++|++++... ++..+++.|+.+++... ...+....
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 37899999999999999999998 45568899999999999875 78999999999998652 12234456
Q ss_pred HHHHHHHhccC-cEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc--c-cCceEEecCCCHHHHHHHHHHHhc
Q 037045 69 ADIISKELNDR-SYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW--Q-ADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 69 ~~~l~~~l~~~-~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~--~-~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
...+++.++++ ++||||||+|+..++ .+ + ..+||+||||||++.++. . ....+++++|+.++|++||.+.++
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 78899999996 999999999998765 33 1 127999999999999887 2 336799999999999999999987
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCcchH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQ 224 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k 224 (424)
... ..+..++.+++|++.|+|+|+||.++|+.++.. . |... +.+.. ..... ....+..++..||+.|+++.|
T Consensus 308 ~~~-~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~-~l~~~-~~~~i~~~l~~Sy~~L~~~lk 379 (549)
T 2a5y_B 308 PMP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN-KLESR-GLVGVECITPYSYKSLAMALQ 379 (549)
T ss_dssp CCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH-HHHHH-CSSTTCCCSSSSSSSHHHHHH
T ss_pred CCC-CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH-Hhhcc-cHHHHHHHHhcccccccHHHH
Confidence 653 246778889999999999999999999998765 3 3332 33332 11110 124688889999999988899
Q ss_pred hHHh-----------hhhhccCCCCCChHHHHhhhhhc--chhhh
Q 037045 225 HCLL-----------GWAIFSTGLELSQDYIIDGWAAQ--KFLAS 256 (424)
Q Consensus 225 ~~~~-----------~la~fp~~~~i~~~~Li~~w~~~--~~~~~ 256 (424)
.||. +||+||+++.++ +..|+++ ||+.+
T Consensus 380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~ 420 (549)
T 2a5y_B 380 RCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICS 420 (549)
T ss_dssp HHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC----
T ss_pred HHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceecc
Confidence 9998 999999999988 7899999 89865
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=2e-31 Score=271.26 Aligned_cols=225 Identities=16% Similarity=0.218 Sum_probs=179.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEeccCCCHHHHHHHHHHHhcccc-------c-----ccChhH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINTDGNIRDIQEIILERLKVNA-------K-----ELNNDL 67 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~-----~~~~~~ 67 (424)
.++|+|+||||+||||||++++++..+..+|+. ++|++++...+...++..++..++... . ..+.++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~lee 229 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHH
Confidence 379999999999999999999987655778875 999999999898888888877654321 0 112234
Q ss_pred HHHHHHHHh---ccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc--ccCceEEec------CCCHHHHH
Q 037045 68 RADIISKEL---NDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW--QADGVIHVQ------QLCQREAK 136 (424)
Q Consensus 68 ~~~~l~~~l---~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~--~~~~~~~l~------~l~~~~~~ 136 (424)
....+++.+ .++++||||||+|+...|+.++ +||+||||||++.+.. .....++++ +|+.+||+
T Consensus 230 L~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~ 304 (1221)
T 1vt4_I 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304 (1221)
T ss_dssp HHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHH
Confidence 455666655 5799999999999988888762 6899999999998874 222355666 89999999
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC-cchHHHHHHHHHhhhcCcccccchhhhhHHHhhh
Q 037045 137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ-SEVAIWRATADELRLTSSEEKKELEEVDRFFTLV 215 (424)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s 215 (424)
+||.+..... . .+...+ .|+|+|+||.++|+.++.. ...+.|... ....+..++..|
T Consensus 305 eLF~~~~g~~---~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelS 362 (1221)
T 1vt4_I 305 SLLLKYLDCR---P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESS 362 (1221)
T ss_dssp HHHHHHHCCC---T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHH
T ss_pred HHHHHHcCCC---H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHH
Confidence 9999985432 1 122333 3999999999999999987 356778652 125899999999
Q ss_pred hccCCcch-HhHHhhhhhccCCCCCChHHHHhhhhhcc
Q 037045 216 YKNLSLEQ-QHCLLGWAIFSTGLELSQDYIIDGWAAQK 252 (424)
Q Consensus 216 ~~~L~~~~-k~~~~~la~fp~~~~i~~~~Li~~w~~~~ 252 (424)
|+.|+++. |+||++||+||++..|+.+.++..|.++|
T Consensus 363 Yd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred HHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 99999999 99999999999999999999999999875
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=6.1e-30 Score=279.91 Aligned_cols=241 Identities=17% Similarity=0.257 Sum_probs=194.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcc-CC-CCceEEEEEeccCCC--HHHHHHHHHHHhcccc-----cccChhHHHHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGE-SR-RFDIIFWENINTDGN--IRDIQEIILERLKVNA-----KELNNDLRADI 71 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~~~~ 71 (424)
.++|+|+|+||+||||||++++++... .. .++.++|++++.... ....+..++..+.... ...+.++....
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence 378999999999999999999988532 34 447899999988543 3445666777776543 34556777788
Q ss_pred HHHHhccC--cEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc---ccCceEEecC-CCHHHHHHHHHHHhcc
Q 037045 72 ISKELNDR--SYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW---QADGVIHVQQ-LCQREAKKLFWEVVGV 145 (424)
Q Consensus 72 l~~~l~~~--~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~-l~~~~~~~l~~~~~~~ 145 (424)
++..+.++ |+||||||+|+..+++.+ .++++||||||++.+.. .....++++. |+++||++||...++.
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 88888777 999999999998777765 56899999999998874 5567888985 9999999999988854
Q ss_pred cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccc-----cchhhhhHHHhhhhccCC
Q 037045 146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEK-----KELEEVDRFFTLVYKNLS 220 (424)
Q Consensus 146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~i~~~l~~s~~~L~ 220 (424)
. .+..++.+++|+++|+|+||||+++|++++... ..|...++.+........ ...+.+.+++..||+.|+
T Consensus 302 ~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~ 376 (1249)
T 3sfz_A 302 K---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376 (1249)
T ss_dssp C---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC
T ss_pred C---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCC
Confidence 3 233445789999999999999999999998863 468888888876332221 122579999999999999
Q ss_pred cchHhHHhhhhhccCCCCCChHHHHhhhhhc
Q 037045 221 LEQQHCLLGWAIFSTGLELSQDYIIDGWAAQ 251 (424)
Q Consensus 221 ~~~k~~~~~la~fp~~~~i~~~~Li~~w~~~ 251 (424)
++.|+||.+||+||+++.|+.+.++..|.++
T Consensus 377 ~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 377 EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 9999999999999999999999999999754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=6.3e-28 Score=243.86 Aligned_cols=239 Identities=17% Similarity=0.253 Sum_probs=184.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcc-CCCC-ceEEEEEeccCCCHHHHHHHH---HHHhccc-----ccccChhHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGE-SRRF-DIIFWENINTDGNIRDIQEII---LERLKVN-----AKELNNDLRADI 71 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i---~~~l~~~-----~~~~~~~~~~~~ 71 (424)
++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...+...+ ...++.. ....+.+.....
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 68999999999999999999987644 4668 58999999876 344444444 3444421 134455666777
Q ss_pred HHHHhcc--CcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc-ccCceEEe---cCCCHHHHHHHHHHHhcc
Q 037045 72 ISKELND--RSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW-QADGVIHV---QQLCQREAKKLFWEVVGV 145 (424)
Q Consensus 72 l~~~l~~--~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~-~~~~~~~l---~~l~~~~~~~l~~~~~~~ 145 (424)
+...+.+ +++||||||+|+...++.+ .++++||||||...+.. .....+++ ++|+.+|++++|...++.
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 7777766 7899999999987766654 45899999999998775 22345555 489999999999998865
Q ss_pred cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccc-----cchhhhhHHHhhhhccCC
Q 037045 146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEK-----KELEEVDRFFTLVYKNLS 220 (424)
Q Consensus 146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~i~~~l~~s~~~L~ 220 (424)
. .....+.+.+|++.|+|+|+||..+|..++.. ...|...++.+........ .....+..++..+|+.|+
T Consensus 302 ~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~ 376 (591)
T 1z6t_A 302 K---KADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376 (591)
T ss_dssp C---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC
T ss_pred C---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCC
Confidence 3 12224578899999999999999999999886 2468888888776222111 112589999999999999
Q ss_pred cchHhHHhhhhhccCCCCCChHHHHhhhhhc
Q 037045 221 LEQQHCLLGWAIFSTGLELSQDYIIDGWAAQ 251 (424)
Q Consensus 221 ~~~k~~~~~la~fp~~~~i~~~~Li~~w~~~ 251 (424)
++.|.||.++|+||++..++.+.+...|..+
T Consensus 377 ~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 377 EDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 9999999999999999999999999999665
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=2e-16 Score=147.50 Aligned_cols=159 Identities=26% Similarity=0.336 Sum_probs=119.8
Q ss_pred cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhc---------c
Q 037045 263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISR---------L 331 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~---------l 331 (424)
++|++|++++|.+..+|. +..+++|++|++++|.++.+|.. +..+++|++|++++|+. +.+|..++. +
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 678888888888887664 57788888888888888877766 67788888888888655 667766554 8
Q ss_pred cccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCC---------
Q 037045 332 INLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAG--------- 402 (424)
Q Consensus 332 ~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~--------- 402 (424)
++|++|++ ..+.+..+|..++.+++|+.|++++|.++.+|..++.+++|++|++++|.+.+.+|.....
T Consensus 183 ~~L~~L~L--~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRL--EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEE--EEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEEC--cCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 88888888 6777778888888888888888888888888877888888888888888777666551111
Q ss_pred ---CCCCcChhhhhccccCceeecC
Q 037045 403 ---SGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 403 ---~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.........++++++|++|+|+
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCCchhhcchhhhcCCCCCEEeCC
Confidence 1122334467788888888774
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=7.8e-16 Score=143.47 Aligned_cols=132 Identities=26% Similarity=0.425 Sum_probs=119.3
Q ss_pred cccceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045 261 GDAHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFL 339 (424)
Q Consensus 261 ~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l 339 (424)
...+++.|++++|.++.+|. +..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|..++.+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 34789999999999999775 58899999999999999988876 78899999999999999999999999999999999
Q ss_pred cccccccccCChhhhc---------cCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQLPAEIGR---------LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~lp~~~~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~ 394 (424)
+ .++..+.+|..++. +++|+.|++++|.++.+|..++++++|++|++++|.+.+
T Consensus 158 ~-~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 158 R-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp E-EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC
T ss_pred C-CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc
Confidence 4 55777888887765 999999999999999999999999999999999998764
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.2e-15 Score=138.47 Aligned_cols=148 Identities=28% Similarity=0.422 Sum_probs=111.3
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~ 341 (424)
++|+.|++++|.+..++.+..+++|++|++++|.++++++..+..+++|++|++++|.+..+|+. ++.+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-- 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-- 140 (272)
T ss_dssp TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC--
Confidence 77888888888888777777888888888888888887777667788888888888888666543 677888888888
Q ss_pred cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
+++.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+ ..++.+++|+
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~ 208 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD------------GVFDRLTSLQ 208 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH------------HHHhCCcCCC
Confidence 67777777654 57788888888888887777655 5778888888888887654321 2456777777
Q ss_pred eeecC
Q 037045 420 ELIIE 424 (424)
Q Consensus 420 ~L~l~ 424 (424)
+|+++
T Consensus 209 ~L~l~ 213 (272)
T 3rfs_A 209 YIWLH 213 (272)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 77763
No 8
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=1.1e-15 Score=131.56 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=126.0
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~l~~ 341 (424)
++++.|++++|.+..+|.+..+++|+.|++++|.++..+. +..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L-- 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI-- 119 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC--
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe--
Confidence 7899999999999998888999999999999998887764 7889999999999999954 6788999999999999
Q ss_pred cccccc-cCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 342 SCSLLL-QLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 342 ~~~~~~-~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
+++.+. ..|..++.+++|+.|++++|. ++.+| .+..+++|++|++++|.+. .+..+..+++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~--------------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH--------------DYRGIEDFPKLN 184 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--------------CCTTGGGCSSCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--------------ChHHhccCCCCC
Confidence 777776 467789999999999999998 88887 6999999999999999653 344788999999
Q ss_pred eeecC
Q 037045 420 ELIIE 424 (424)
Q Consensus 420 ~L~l~ 424 (424)
+|+++
T Consensus 185 ~L~l~ 189 (197)
T 4ezg_A 185 QLYAF 189 (197)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 99875
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4e-15 Score=133.24 Aligned_cols=148 Identities=25% Similarity=0.370 Sum_probs=110.4
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l 339 (424)
++++.|++++|.+..++ .+..+++|+.|++++|.++..++..+..+++|++|++++|.+..+| ..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 56788888888888754 3577888888888888888877766777888888888888886665 44677888888888
Q ss_pred cccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 340 RSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 340 ~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
+++.+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.. ...+..+++
T Consensus 115 --~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~ 180 (251)
T 3m19_A 115 --GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP------------HGAFDRLGK 180 (251)
T ss_dssp --CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTT
T ss_pred --CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC------------HHHHhCCCC
Confidence 77777777664 57788888888888888877664 778888888888888765331 125667777
Q ss_pred CceeecC
Q 037045 418 LEELIIE 424 (424)
Q Consensus 418 L~~L~l~ 424 (424)
|++|+|+
T Consensus 181 L~~L~l~ 187 (251)
T 3m19_A 181 LQTITLF 187 (251)
T ss_dssp CCEEECC
T ss_pred CCEEEee
Confidence 7777764
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1e-14 Score=132.00 Aligned_cols=148 Identities=24% Similarity=0.341 Sum_probs=100.3
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.++.++. +..+++|+.|++++|.++.++...+..+++|++|++++|.+..+| ..+..+++|++|++
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence 667777777777776543 256777777777777777776665666777777777777775554 34567777777777
Q ss_pred cccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 340 RSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 340 ~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
+.+.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+. ....+..+++
T Consensus 141 --s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~ 206 (270)
T 2o6q_A 141 --GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV------------PEGAFDSLEK 206 (270)
T ss_dssp --CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTT
T ss_pred --CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC------------CHHHhccccC
Confidence 66666666653 56677777777777777766654 66777777777777765422 1124567777
Q ss_pred CceeecC
Q 037045 418 LEELIIE 424 (424)
Q Consensus 418 L~~L~l~ 424 (424)
|++|+|+
T Consensus 207 L~~L~l~ 213 (270)
T 2o6q_A 207 LKMLQLQ 213 (270)
T ss_dssp CCEEECC
T ss_pred CCEEEec
Confidence 8887764
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.3e-14 Score=131.47 Aligned_cols=148 Identities=28% Similarity=0.395 Sum_probs=128.2
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
++++.|++++|.+..++. +..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 679999999999998764 6889999999999999999998877889999999999999977764 5789999999999
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
..+.+..+|. .++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+. ....+..+++
T Consensus 117 --~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~ 182 (270)
T 2o6q_A 117 --DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV------------PEGAFDKLTE 182 (270)
T ss_dssp --CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTT
T ss_pred --CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe------------ChhHhccCCC
Confidence 8888887765 578999999999999999988876 78999999999999976543 1224778899
Q ss_pred CceeecC
Q 037045 418 LEELIIE 424 (424)
Q Consensus 418 L~~L~l~ 424 (424)
|++|+|+
T Consensus 183 L~~L~L~ 189 (270)
T 2o6q_A 183 LKTLKLD 189 (270)
T ss_dssp CCEEECC
T ss_pred cCEEECC
Confidence 9999874
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.7e-14 Score=127.29 Aligned_cols=132 Identities=25% Similarity=0.408 Sum_probs=109.9
Q ss_pred ccceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceee
Q 037045 262 DAHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALF 338 (424)
Q Consensus 262 ~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~ 338 (424)
.++++.|++++|.++.++ .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|+. +..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 378899999999888853 357888899999999999888877678888999999999988777654 67889999999
Q ss_pred ecccccccccCChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045 339 LRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 339 l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~ 395 (424)
+ +++.+..+|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++.+.
T Consensus 119 L--s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 119 M--CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp C--CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred c--cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9 8888888888888889999999999988888765 78888999999999876543
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.2e-14 Score=128.18 Aligned_cols=144 Identities=23% Similarity=0.277 Sum_probs=122.8
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~ 344 (424)
+.++.+++.+..+|... .++|+.|++++|.++++++..+..+++|++|++++|.+..+|. .+..+++|++|++ +++
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L--s~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL--GTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC--CCC
Confidence 56888999998877532 3889999999999999877778899999999999999988875 4689999999999 888
Q ss_pred ccccCChh-hhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
.+..+|.. +..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+. ....+..+++|++|++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI------------PHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC------------CTTTTTTCTTCCEEEC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc------------CHHHHhCCCCCCEEEe
Confidence 89888764 6889999999999999999999999999999999999986532 1135778888888887
Q ss_pred C
Q 037045 424 E 424 (424)
Q Consensus 424 ~ 424 (424)
+
T Consensus 167 ~ 167 (229)
T 3e6j_A 167 F 167 (229)
T ss_dssp T
T ss_pred e
Confidence 4
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.9e-14 Score=130.45 Aligned_cols=146 Identities=22% Similarity=0.322 Sum_probs=127.2
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~ 341 (424)
++++.|++.++.+..++.+..+++|+.|++++|.+++++. +..+++|++|++++|.+..+|+ .++.+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-- 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-- 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC--
Confidence 7899999999999999989999999999999999998753 7889999999999999977765 4789999999999
Q ss_pred cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
..+.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.. ...++.+++|+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~~~~~~l~~L~ 184 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP------------EGVFDKLTQLK 184 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------TTTTTTCTTCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC------------HHHhcCCccCC
Confidence 88888888764 78999999999999999988766 689999999999999865431 22468889999
Q ss_pred eeecC
Q 037045 420 ELIIE 424 (424)
Q Consensus 420 ~L~l~ 424 (424)
+|+++
T Consensus 185 ~L~L~ 189 (272)
T 3rfs_A 185 DLRLY 189 (272)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=2.1e-14 Score=132.58 Aligned_cols=141 Identities=19% Similarity=0.270 Sum_probs=77.9
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.++.++.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..+++ ++.+++|++|++ +
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l--~ 159 (308)
T 1h6u_A 85 TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSI--G 159 (308)
T ss_dssp CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC--C
T ss_pred CCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEc--c
Confidence 4555555555555555544555555555555555555443 4455555555555555544433 555555555555 4
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+.+..++. +..+++|+.|++++|.++.+|. +..+++|++|++++|.+. .+..+..+++|++|+
T Consensus 160 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~--------------~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 160 NAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS--------------DVSPLANTSNLFIVT 223 (308)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC--------------BCGGGTTCTTCCEEE
T ss_pred CCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC--------------ccccccCCCCCCEEE
Confidence 455555544 5555555555555555555543 555555555555555432 233477788888877
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 224 l~ 225 (308)
T 1h6u_A 224 LT 225 (308)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 16
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=2.1e-14 Score=131.47 Aligned_cols=141 Identities=20% Similarity=0.323 Sum_probs=101.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.++.++.+..+++|+.|++++|.++.++. +..+++|++|++++|.+..+ +.+..+++|++|++ +
T Consensus 68 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l--~ 142 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYL--G 142 (291)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEEC--C
T ss_pred CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEc--c
Confidence 6777777777777776556777777777777777777554 66677777777777777655 34677777777777 6
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..+ ..+..+++|+.|++++|.++.++. +..+++|++|++++|.+. .+..+..+++|+.|+
T Consensus 143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~--------------~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 143 NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--------------DLRALAGLKNLDVLE 206 (291)
T ss_dssp SSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--------------BCGGGTTCTTCSEEE
T ss_pred CCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC--------------CChhhccCCCCCEEE
Confidence 6666666 456777777777777777776654 777777777777777542 345678888888887
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 207 l~ 208 (291)
T 1h6t_A 207 LF 208 (291)
T ss_dssp EE
T ss_pred Cc
Confidence 63
No 17
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.9e-14 Score=129.66 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=117.3
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.++.++.+..+++|+.|++++|.++++++ +..+++|++|++++|.+..+|.... ++|++|++ +
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L--~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL--D 114 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC--C
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc--c
Confidence 7889999999999988888889999999999999998887 7788999999999999877765333 88999999 7
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..++ .+..+++|+.|++++|.++.+| .+..+++|++|++++|.+.+ +..+..+++|++|+
T Consensus 115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~--------------~~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN--------------TGGLTRLKKVNWID 178 (263)
T ss_dssp SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB--------------CTTSTTCCCCCEEE
T ss_pred CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc--------------hHHhccCCCCCEEe
Confidence 88888876 5888899999999999988886 68889999999999987542 25677788888887
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 179 l~ 180 (263)
T 1xeu_A 179 LT 180 (263)
T ss_dssp EE
T ss_pred CC
Confidence 63
No 18
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=2.8e-14 Score=131.73 Aligned_cols=141 Identities=22% Similarity=0.331 Sum_probs=94.6
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.+..++.+..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++ +
T Consensus 63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l--~ 137 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL--D 137 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC--C
T ss_pred CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC--C
Confidence 5667777777766665556666667777777777666543 5566677777777776655543 666677777777 6
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..++. ++.+++|+.|++++|.++.+|. +..+++|+.|++++|.+ ..+..+..+++|++|+
T Consensus 138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l--------------~~~~~l~~l~~L~~L~ 201 (308)
T 1h6u_A 138 LNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI--------------SDISPLASLPNLIEVH 201 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC--------------CCCGGGGGCTTCCEEE
T ss_pred CCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc--------------CcChhhcCCCCCCEEE
Confidence 666666654 6666777777777777666654 66677777777777654 2334478888999888
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 202 L~ 203 (308)
T 1h6u_A 202 LK 203 (308)
T ss_dssp CT
T ss_pred cc
Confidence 75
No 19
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2.3e-14 Score=125.54 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=103.3
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
++++.|++++|.++.++ .+..+++|+.|++++|.++.+.+..+..+++|++|++++|.+..+|+. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 67888888888888754 357788888888888888877666678888888888888888777754 577888888888
Q ss_pred cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~ 394 (424)
+++.+..+ |..+..+++|+.|++++|.++.+|.. +..+++|+++++++|++..
T Consensus 112 --~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 --NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp --CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred --CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777766 45677888888888888888877665 7788888888888887643
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=125.31 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=95.4
Q ss_pred cceeEEEeeccCCCCCC-C--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTLP-D--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~-~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~ 338 (424)
+.++.|++++|.++.++ . +..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+ .+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 56677888888777752 2 4677778888888888887776657777788888888887766654 477778888888
Q ss_pred ecccccccccC-ChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCC
Q 037045 339 LRSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 339 l~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
+ +++.+..+ |..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++.+.
T Consensus 112 L--s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 112 L--RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp C--TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred C--CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8 66777665 45677777888888888877766 44577778888888888776543
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=4e-14 Score=129.58 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=126.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.+..++.+..+++|+.|++++|.++++++ +..+++|++|++++|.+..+|. +..+++|++|++ +
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L--~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL--E 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC--T
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC--C
Confidence 7899999999999999889999999999999999999887 7889999999999999977654 999999999999 8
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+ +..+..+++|++|+
T Consensus 121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 121 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--------------IVPLAGLTKLQNLY 184 (291)
T ss_dssp TSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC--------------CGGGTTCTTCCEEE
T ss_pred CCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc--------------chhhcCCCccCEEE
Confidence 88888874 688999999999999999988 468999999999999997542 33488899999998
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 185 L~ 186 (291)
T 1h6t_A 185 LS 186 (291)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=2.7e-14 Score=130.35 Aligned_cols=148 Identities=24% Similarity=0.316 Sum_probs=90.2
Q ss_pred cceeEEEeeccC-CCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045 263 AHTKRLSLFGFP-SSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~-~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~ 338 (424)
++|+.|++++|. +..+ + .+..+++|+.|++++|.++..++..+..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 556666666665 5553 2 23556666666666666666555545566666666666666655543 356666666666
Q ss_pred ecccccccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045 339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR 416 (424)
Q Consensus 339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~ 416 (424)
+ +++.+..+|. .+..+++|+.|++++|.++.+ |..+.++++|+.|++++|.+.+ .....+..++
T Consensus 160 l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~ 225 (285)
T 1ozn_A 160 L--HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA------------LPTEALAPLR 225 (285)
T ss_dssp C--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC------------CCHHHHTTCT
T ss_pred C--CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc------------CCHHHcccCc
Confidence 6 5555655554 355666666666666666544 4446666666666666665432 1224578888
Q ss_pred cCceeecC
Q 037045 417 LLEELIIE 424 (424)
Q Consensus 417 ~L~~L~l~ 424 (424)
+|++|+|+
T Consensus 226 ~L~~L~l~ 233 (285)
T 1ozn_A 226 ALQYLRLN 233 (285)
T ss_dssp TCCEEECC
T ss_pred ccCEEecc
Confidence 88888874
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=3.3e-14 Score=129.75 Aligned_cols=148 Identities=19% Similarity=0.195 Sum_probs=89.7
Q ss_pred cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCC-CCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKR-LEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~ 338 (424)
++|+.|++++|.+..+ + .+..+++|+.|++++|. ++.+++..+..+++|++|++++|.+..+ |..+..+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 5666666666666653 2 34566666666666665 6665544456666666666666666444 34456666666666
Q ss_pred ecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045 339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR 416 (424)
Q Consensus 339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~ 416 (424)
+ +.+.+..+|. .++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+. ....++.++
T Consensus 136 l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~ 201 (285)
T 1ozn_A 136 L--QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV------------HPHAFRDLG 201 (285)
T ss_dssp C--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE------------CTTTTTTCT
T ss_pred C--CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc------------CHhHccCcc
Confidence 6 5566665554 356666666666666666666554 66666666666666654332 123455566
Q ss_pred cCceeecC
Q 037045 417 LLEELIIE 424 (424)
Q Consensus 417 ~L~~L~l~ 424 (424)
+|++|+++
T Consensus 202 ~L~~L~l~ 209 (285)
T 1ozn_A 202 RLMTLYLF 209 (285)
T ss_dssp TCCEEECC
T ss_pred cccEeeCC
Confidence 66666653
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.6e-14 Score=122.47 Aligned_cols=133 Identities=24% Similarity=0.412 Sum_probs=117.3
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
++++.|++++|.++.++. +..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|+. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 689999999999998664 47899999999999999999888778899999999999999777654 789999999999
Q ss_pred cccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcc
Q 037045 340 RSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 340 ~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
+++.+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+
T Consensus 108 --~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 108 --NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp --CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred --CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 88888888765 78899999999999999988776 7899999999999998766544
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=5.5e-14 Score=125.78 Aligned_cols=147 Identities=23% Similarity=0.286 Sum_probs=124.9
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~ 341 (424)
+..+.++++++.++.+|.... ++++.|++++|.++.+++..+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-- 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL-- 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC--
Confidence 356789999999999875422 68999999999999988877889999999999999996665 55899999999999
Q ss_pred cccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 342 SCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 342 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
+++.+..+|. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.. ...++.+++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~ 158 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP------------AGAFDKLTNLQ 158 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------TTTTTTCTTCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC------------HHHcCcCcCCC
Confidence 8888888875 578999999999999999988876 689999999999999865331 12578889999
Q ss_pred eeecC
Q 037045 420 ELIIE 424 (424)
Q Consensus 420 ~L~l~ 424 (424)
+|+|+
T Consensus 159 ~L~L~ 163 (251)
T 3m19_A 159 TLSLS 163 (251)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.3e-14 Score=130.03 Aligned_cols=128 Identities=23% Similarity=0.245 Sum_probs=80.1
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~ 341 (424)
++|+.|++++|.++.++....+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+| ..+..+++|++|++
T Consensus 55 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L-- 131 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL-- 131 (290)
T ss_dssp TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC--
T ss_pred CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC--
Confidence 56666666666666655445666666666666666666554 455666666666666665554 34666666666666
Q ss_pred cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCC
Q 037045 342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENV 393 (424)
Q Consensus 342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~ 393 (424)
+++.+..+|.. +..+++|+.|++++|+++.+|.+ +..+++|++|++++|.+.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 55666655543 45566666666666666666654 456666666666666543
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=3.6e-14 Score=129.72 Aligned_cols=146 Identities=22% Similarity=0.243 Sum_probs=115.2
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~ 340 (424)
++++.|++++|.+..++ .+..+++|+.|++++|.++.++.. ..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l- 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV- 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC-
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC-
Confidence 67888888888887743 357788888888888888876653 5678888888888888888888888888899988
Q ss_pred ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccC
Q 037045 341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLL 418 (424)
Q Consensus 341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L 418 (424)
+++.+..+|. .+..+++|+.|++++|.++.+|.+ +..+++|+.|++++|.+.+. ....+..+++|
T Consensus 108 -~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~l~~L 174 (290)
T 1p9a_G 108 -SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL------------PAGLLNGLENL 174 (290)
T ss_dssp -CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC------------CTTTTTTCTTC
T ss_pred -CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc------------CHHHhcCcCCC
Confidence 7888887764 578888899999988888887766 67888899999988876432 11245778899
Q ss_pred ceeecC
Q 037045 419 EELIIE 424 (424)
Q Consensus 419 ~~L~l~ 424 (424)
++|+|+
T Consensus 175 ~~L~L~ 180 (290)
T 1p9a_G 175 DTLLLQ 180 (290)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 998874
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=2.8e-14 Score=132.06 Aligned_cols=160 Identities=19% Similarity=0.268 Sum_probs=108.8
Q ss_pred cceeEEEeeccCCCC---CC-CCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccce
Q 037045 263 AHTKRLSLFGFPSST---LP-DMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNA 336 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~ 336 (424)
.+++.|+++++.+.. +| .+..+++|+.|++++ |.+.+..+..+..+++|++|++++|.+ +.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888877764 33 457777788888874 777643333367777888888888877 367777777888888
Q ss_pred eeecccccccc-cCChhhhccCCCCEEEecCCcCc-ccchhhhcCC-CCCEeeeccccCCCCcccCCCC---------CC
Q 037045 337 LFLRSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLI-ELKYLRVSRVENVGNHTHADAG---------SG 404 (424)
Q Consensus 337 l~l~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~l~l~~n~~~~~~~~~~~~---------~~ 404 (424)
|++ +.+.+. .+|..++.+++|+.|++++|.++ .+|..+..++ +|++|++++|.+.+..|..... ..
T Consensus 130 L~L--s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDF--SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207 (313)
T ss_dssp EEC--CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred EeC--CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence 888 566655 67777777788888888888776 6777777776 7788888777765544431100 00
Q ss_pred --CCcChhhhhccccCceeecC
Q 037045 405 --EMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 405 --~~~~~~~l~~l~~L~~L~l~ 424 (424)
.......++++++|++|+++
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECC
T ss_pred cccCcCCHHHhcCCCCCEEECC
Confidence 11234456778888888764
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=136.71 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=81.1
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
++++.|++++|.++.++. +..+++|+.|++++|.+++.++..+..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 466666666666666433 46666666666666666665554456666666666666666666544 566666666666
Q ss_pred cccccccccCCh--hhhccCCCCEEEecCCc-Ccccc-hhhhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQLPA--EIGRLQKLEILDVSHTK-VQCLP-SEIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~l~l~~n~~~~ 394 (424)
+++.+..+|. .+..+++|+.|++++|. +..++ ..+..+++|++|++++|.+.+
T Consensus 132 --~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 132 --LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp --TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred --CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 5666666655 45666666666666663 55443 336666666666666665543
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=3.8e-14 Score=128.72 Aligned_cols=130 Identities=27% Similarity=0.294 Sum_probs=99.8
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l 339 (424)
++++.|++++|.++.++ .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56788888888887754 4577888888888888888777666777888888888888885554 56778888888888
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~~ 394 (424)
..+.+..++. .++.+++|+.|++++|.++. +|..+.++++|++|++++|.+.+
T Consensus 108 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 108 --VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp --TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred --CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 6777776655 57778888888888888765 67778888888888888887654
No 31
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=4.8e-14 Score=123.50 Aligned_cols=144 Identities=22% Similarity=0.299 Sum_probs=121.7
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~ 344 (424)
+.++++++.++.+|... .++|+.|++++|.++.+++..+..+++|++|++++|.+..+ |..+..+++|++|++ +++
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL--YGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC--CSS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC--CCC
Confidence 46888889998887532 26899999999999998887788899999999999999665 678999999999999 889
Q ss_pred ccccCChh-hhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+..+|.. +..+++|+.|++++|.++.++. .+..+++|++|++++|.+.+.. ...+..+++|++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA------------KGTFSPLRAIQTMH 158 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC------------HHHHhCCCCCCEEE
Confidence 99999875 5789999999999999997754 5899999999999999875432 22467788888888
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
|+
T Consensus 159 L~ 160 (220)
T 2v9t_B 159 LA 160 (220)
T ss_dssp CC
T ss_pred eC
Confidence 74
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=3.5e-14 Score=122.11 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=111.5
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCC-cCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG-CLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~l~l~~ 341 (424)
++|+.|++++|.+..++.+..+++|+.|++++|.++......+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L-- 143 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL-- 143 (197)
T ss_dssp TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC--
T ss_pred CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc--
Confidence 789999999999888888899999999999999999743333788999999999999995 46788999999999999
Q ss_pred cccc-cccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 342 SCSL-LLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 342 ~~~~-~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
+++. +..+| .+..+++|+.|++++|.++.+| .+..+++|++|++++|.+.
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 6676 88887 6899999999999999999987 7899999999999999753
No 33
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=8.1e-14 Score=139.85 Aligned_cols=141 Identities=20% Similarity=0.325 Sum_probs=88.7
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.+..++.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..+ +.+..+++|+.|++ +
T Consensus 65 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L--s 139 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYL--G 139 (605)
T ss_dssp TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEEC--C
T ss_pred CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCCCCCCC-ccccCCCccCEEEC--C
Confidence 5666666666666665556666666666666666666552 55666666666666666554 33666666666666 5
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..+ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+. .++.++.|++|+.|+
T Consensus 140 ~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~--------------~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 140 NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--------------DLRALAGLKNLDVLE 203 (605)
T ss_dssp SSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--------------BCGGGTTCTTCSEEE
T ss_pred CCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC--------------CChHHccCCCCCEEE
Confidence 5666655 446666666666666666665544 666666666666666432 234566667777766
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
|+
T Consensus 204 L~ 205 (605)
T 1m9s_A 204 LF 205 (605)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.8e-13 Score=118.67 Aligned_cols=144 Identities=24% Similarity=0.361 Sum_probs=120.1
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~ 344 (424)
+.++..++.+..+|.. -.++|+.|++++|.++.++...+..+++|++|++++|.+..+|.. +..+++|++|++ +++
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--s~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL--STN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC--CCC
Confidence 4677788888877643 356899999999999999888788899999999999999877754 689999999999 888
Q ss_pred ccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------------~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------------GVFDRLTSLQYIW 154 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCEEE
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH------------HHhccCCCccEEE
Confidence 88888764 68999999999999999988776 7899999999999997654311 2367788888887
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 155 l~ 156 (208)
T 2o6s_A 155 LH 156 (208)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.52 E-value=2.4e-14 Score=132.47 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhccc-ccceee
Q 037045 263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLI-NLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~-~L~~l~ 338 (424)
++|++|++++|.+.. +| .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ +.+|..++.+. +|++|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 344444444444442 22 234444444444444444422222244444444444444444 24444444444 444444
Q ss_pred ecccccccc-cCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045 339 LRSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR 416 (424)
Q Consensus 339 l~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~ 416 (424)
+ +.+.+. .+|..++.+. |+.|++++|.++ ..|..+..+++|++|++++|.+.+ .+..+..++
T Consensus 181 L--~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~l~ 244 (313)
T 1ogq_A 181 I--SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-------------DLGKVGLSK 244 (313)
T ss_dssp C--CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-------------BGGGCCCCT
T ss_pred C--cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-------------ecCcccccC
Confidence 4 333332 3444444443 445555544444 233334455555555555554332 344577889
Q ss_pred cCceeecC
Q 037045 417 LLEELIIE 424 (424)
Q Consensus 417 ~L~~L~l~ 424 (424)
+|++|+++
T Consensus 245 ~L~~L~Ls 252 (313)
T 1ogq_A 245 NLNGLDLR 252 (313)
T ss_dssp TCCEEECC
T ss_pred CCCEEECc
Confidence 99999885
No 36
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=123.60 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=119.6
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCC-ChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeecccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKL-PTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSC 343 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~ 343 (424)
+.++++++.++.+|.. -...++.|++++|.++.+ +...+..+++|++|++++|.+..+++ .+..+++|++|++ ++
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L--s~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL--TS 90 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC--CC
Confidence 4789999999987753 234678999999999987 44557889999999999999977664 7999999999999 88
Q ss_pred cccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCcee
Q 037045 344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL 421 (424)
Q Consensus 344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 421 (424)
+.+..+|. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+..| ..+..+++|++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L 158 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP------------GAFDTLHSLSTL 158 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT------------TTTTTCTTCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH------------HHhcCCCCCCEE
Confidence 88888776 488999999999999999977 5558999999999999998765422 467788899998
Q ss_pred ecC
Q 037045 422 IIE 424 (424)
Q Consensus 422 ~l~ 424 (424)
+|+
T Consensus 159 ~L~ 161 (220)
T 2v70_A 159 NLL 161 (220)
T ss_dssp ECC
T ss_pred Eec
Confidence 874
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=5.2e-14 Score=117.75 Aligned_cols=127 Identities=25% Similarity=0.234 Sum_probs=113.3
Q ss_pred cceeEEEeeccCCC--CCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhhcccccceee
Q 037045 263 AHTKRLSLFGFPSS--TLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~ 338 (424)
++++.|++++|.+. .+|.. ..+++|+.|++++|.++.. ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 78999999999998 57655 8899999999999999988 337889999999999999966 777778899999999
Q ss_pred ecccccccccCC--hhhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeeeccccCC
Q 037045 339 LRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 339 l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l~~n~~~ 393 (424)
+ +++.+..+| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+.
T Consensus 102 L--s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 L--SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp C--BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred c--cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9 888998876 688999999999999999998887 6899999999999999754
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=9.2e-14 Score=144.33 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=46.9
Q ss_pred cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+.. +| .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ +.+|..++.+++|++|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 556666666666664 33 235666666666666666643333355666666666666666 456666666666666666
No 39
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.4e-14 Score=118.66 Aligned_cols=127 Identities=17% Similarity=0.256 Sum_probs=112.1
Q ss_pred ccceeEEEeeccCCCCCCCCcCcc-cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhh-hcccccceeee
Q 037045 262 DAHTKRLSLFGFPSSTLPDMPNCC-EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFL 339 (424)
Q Consensus 262 ~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~l~l 339 (424)
..+++.|++++|.++.++.+..+. +|+.|++++|.+++++ .+..+++|++|++++|.+..+|+.+ ..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 378999999999999988776666 9999999999999873 2788999999999999998887654 89999999999
Q ss_pred cccccccccCCh--hhhccCCCCEEEecCCcCcccchh----hhcCCCCCEeeeccccC
Q 037045 340 RSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPSE----IGQLIELKYLRVSRVEN 392 (424)
Q Consensus 340 ~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~l~l~~n~~ 392 (424)
+++.+..+|. .++.+++|+.|++++|+++.+|.. +..+++|++|+++.|..
T Consensus 96 --~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 --TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp --CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred --CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8889998887 788999999999999999988875 88999999999999864
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=5.7e-14 Score=129.54 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=99.7
Q ss_pred cceeEEEeeccCCCCCCC---CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc--CChhhhccccccee
Q 037045 263 AHTKRLSLFGFPSSTLPD---MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC--LPPSISRLINLNAL 337 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~p~~~~~l~~L~~l 337 (424)
++|+.|++++|.+...+. +..+++|+.|++++|.++..++..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 667777777777766442 4667777777777777776655556667777777777777633 56667777777777
Q ss_pred eecccccccccC-ChhhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcc
Q 037045 338 FLRSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKL 415 (424)
Q Consensus 338 ~l~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l 415 (424)
++ +++.+..+ |..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+.+..+ ..+..+
T Consensus 181 ~L--s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~~ 246 (306)
T 2z66_A 181 DL--SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------------QELQHF 246 (306)
T ss_dssp EC--TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS------------SSCCCC
T ss_pred EC--CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH------------HHHHhh
Confidence 77 66666655 4566777777777777777776654 36677777777777776654322 245555
Q ss_pred -ccCceeecC
Q 037045 416 -RLLEELIIE 424 (424)
Q Consensus 416 -~~L~~L~l~ 424 (424)
++|++|+|+
T Consensus 247 ~~~L~~L~L~ 256 (306)
T 2z66_A 247 PSSLAFLNLT 256 (306)
T ss_dssp CTTCCEEECT
T ss_pred hccCCEEEcc
Confidence 367777764
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=4.3e-14 Score=130.38 Aligned_cols=148 Identities=21% Similarity=0.218 Sum_probs=122.9
Q ss_pred cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCCC-cCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNIG-CLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..+|. +..+++|+.|++++|.++..+. ..+..+++|++|++++|.+. ..|..+..+++|++|++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 789999999998887653 5788999999999999998765 44778899999999999984 45667889999999999
Q ss_pred ccccccccc--CChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045 340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR 416 (424)
Q Consensus 340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~ 416 (424)
.++.+.. +|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+. ....+..++
T Consensus 158 --~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~ 223 (306)
T 2z66_A 158 --AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL------------DTFPYKCLN 223 (306)
T ss_dssp --TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC------------CSGGGTTCT
T ss_pred --CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc------------ChhhccCcc
Confidence 7777764 788899999999999999998876 55689999999999999986543 222578889
Q ss_pred cCceeecC
Q 037045 417 LLEELIIE 424 (424)
Q Consensus 417 ~L~~L~l~ 424 (424)
+|++|+|+
T Consensus 224 ~L~~L~L~ 231 (306)
T 2z66_A 224 SLQVLDYS 231 (306)
T ss_dssp TCCEEECT
T ss_pred cCCEeECC
Confidence 99999875
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.49 E-value=3.1e-13 Score=137.23 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=94.5
Q ss_pred ceeEEEeeccCCCC-CCC-Cc-------CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcc---
Q 037045 264 HTKRLSLFGFPSST-LPD-MP-------NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRL--- 331 (424)
Q Consensus 264 ~l~~L~l~~~~~~~-~~~-~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l--- 331 (424)
+|+.|++++|.+.. .|. +. .+.+|+.|++++|.++.+|...+..+++|++|++++|.+..+|..+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 45555555555554 121 22 4556777777777777776665666777777777777776666543322
Q ss_pred -----cccceeeecccccccccCChhhh--ccCCCCEEEecCCcCcccchhhhcCCCCCEeeecc------ccCCCCccc
Q 037045 332 -----INLNALFLRSSCSLLLQLPAEIG--RLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR------VENVGNHTH 398 (424)
Q Consensus 332 -----~~L~~l~l~~~~~~~~~lp~~~~--~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~------n~~~~~~~~ 398 (424)
++|++|++ +++.+..+|..+. .+++|+.|++++|.++.+|..+.++++|++|++++ |.+.+.
T Consensus 483 ~~~~l~~L~~L~L--s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~--- 557 (636)
T 4eco_A 483 NFKNTYLLTSIDL--RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE--- 557 (636)
T ss_dssp ECTTGGGCCEEEC--CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC---
T ss_pred cccccCCccEEEC--cCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc---
Confidence 27777777 6666667777665 77777777777777777777777777777777744 333333
Q ss_pred CCCCCCCCcChhhhhccccCceeecC
Q 037045 399 ADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 399 ~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.+..++.+++|++|+|+
T Consensus 558 ---------~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 558 ---------WPEGITLCPSLTQLQIG 574 (636)
T ss_dssp ---------CCTTGGGCSSCCEEECC
T ss_pred ---------ChHHHhcCCCCCEEECC
Confidence 33467777888887764
No 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.7e-13 Score=137.54 Aligned_cols=141 Identities=18% Similarity=0.252 Sum_probs=126.4
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.+..++.+..|++|+.|++++|.++.+++ +..+++|+.|++++|.+..+| .+..+++|+.|++ +
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L--s 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL--E 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC--T
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe--c
Confidence 7899999999999999999999999999999999999887 788999999999999997776 6899999999999 8
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+ +..+..|++|+.|+
T Consensus 118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~--------------~~~l~~l~~L~~L~ 181 (605)
T 1m9s_A 118 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--------------IVPLAGLTKLQNLY 181 (605)
T ss_dssp TSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC--------------CGGGTTCTTCCEEE
T ss_pred CCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC--------------chhhccCCCCCEEE
Confidence 88888875 588999999999999999988 468999999999999997543 23388899999998
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
|+
T Consensus 182 Ls 183 (605)
T 1m9s_A 182 LS 183 (605)
T ss_dssp CC
T ss_pred Cc
Confidence 85
No 44
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.48 E-value=1.2e-12 Score=125.97 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=141.6
Q ss_pred EEEE--EcCCCCcHHHHHHHHHHhhccC---CCCc-eEEEEEeccCCCHHHHHHHHHHHhccccc--ccChhHHHHHHHH
Q 037045 3 KICI--WGPLGVGKTTIMENLHHSIGES---RRFD-IIFWENINTDGNIRDIQEIILERLKVNAK--ELNNDLRADIISK 74 (424)
Q Consensus 3 vi~I--~G~~G~GKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~ 74 (424)
.+.| +|++|+||||||+.+++..... ..++ .++|+++....+...++..++.+++.... ..+..+....+.+
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 131 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD 131 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 5667 9999999999999999886321 1233 37888887778899999999999876532 2334455566666
Q ss_pred Hhc--cCcEEEEEcCCCCcc--------hhhhh-ccC--CC--C--CCcEEEEEecchhhh-------c----ccCceEE
Q 037045 75 ELN--DRSYVLFLDGVSSEI--------NFKEI-GMH--DD--H--GRGKVVFACRSREFC-------W----QADGVIH 126 (424)
Q Consensus 75 ~l~--~~~~LlvlD~~~~~~--------~~~~~-~~~--~~--~--~~~~iiittr~~~~~-------~----~~~~~~~ 126 (424)
.+. +++++|||||++... .+..+ ... .. . .+..+|+||+..... . .....+.
T Consensus 132 ~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 211 (412)
T 1w5s_A 132 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH 211 (412)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE
T ss_pred HHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeee
Confidence 664 578999999998742 22222 111 11 2 445678788754321 1 1223399
Q ss_pred ecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcC------CchHHHHHHHHHHh-----CC---cchHHHHHHHH
Q 037045 127 VQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECG------GMPYMLKLIGKELA-----NQ---SEVAIWRATAD 192 (424)
Q Consensus 127 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~------g~Plai~~~a~~l~-----~~---~~~~~~~~~~~ 192 (424)
+.+++.+++.++|...+..........++.+..|++.++ |+|..+..++.... .. -+.+.+.....
T Consensus 212 l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 212 LPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 999999999999987654221111223567788999999 99976655443211 11 11122222211
Q ss_pred HhhhcCcccccchhhhhHHHhhhhccCCcchHhHHhhhhhcc--CCCCCChHHHHh
Q 037045 193 ELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFS--TGLELSQDYIID 246 (424)
Q Consensus 193 ~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp--~~~~i~~~~Li~ 246 (424)
... . ...+...+..|++..+.++..+|.+. .+..++...+..
T Consensus 292 ~~~-----------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~ 335 (412)
T 1w5s_A 292 ENE-----------A-ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQ 335 (412)
T ss_dssp HC------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHh-----------c-cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 111 0 23345567789988999999888754 333455544443
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=1.4e-13 Score=134.09 Aligned_cols=128 Identities=22% Similarity=0.286 Sum_probs=64.3
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..++ .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 45555555555555432 23455555555555555555555445555555555555555544432 3445555555555
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~ 392 (424)
+ .++.+..++. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+
T Consensus 179 ~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 179 G-ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp C-CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred C-CCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 2 3344444433 2444555555555555554444 244444555555555544
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=3.9e-13 Score=139.75 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred cccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcc--------cccceeeecccccccccCChhhh-
Q 037045 284 CCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRL--------INLNALFLRSSCSLLLQLPAEIG- 354 (424)
Q Consensus 284 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l--------~~L~~l~l~~~~~~~~~lp~~~~- 354 (424)
+++|+.|++++|.++.+|...+..+++|+.|++++|.+..+|..+... ++|+.|++ +++.+..+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~L--s~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL--RFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEEC--CSSCCCCCCGGGST
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEEC--CCCCCccchHHhhh
Confidence 346777777777777777776666777888888888777776654332 37888888 6677777777776
Q ss_pred -ccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccc------cCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 355 -RLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRV------ENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 355 -~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n------~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.+++|+.|++++|.++.+|..+.++++|+.|++++| .+.+. .+..++++++|++|+|+
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~------------ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ------------WPTGITTCPSLIQLQIG 814 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC------------CCTTGGGCSSCCEEECC
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc------------ChHHHhcCCCCCEEECC
Confidence 778888888888887777777778888888887663 33333 33466777777777764
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=1.5e-13 Score=124.68 Aligned_cols=160 Identities=25% Similarity=0.305 Sum_probs=100.2
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..++. +..+++|+.|++++|.++..+...+..+++|++|++++|.+..++. .++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 677777777777776442 4667777777777777777665556677777777777777755543 5677777777777
Q ss_pred ccccccccc--CChhhhccCCCCEEEecCCcCcccch-hhhcCCCCC----EeeeccccCCCCcccC---------CCCC
Q 037045 340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTKVQCLPS-EIGQLIELK----YLRVSRVENVGNHTHA---------DAGS 403 (424)
Q Consensus 340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~l~l~~n~~~~~~~~~---------~~~~ 403 (424)
+.+.+.. +|..++.+++|+.|++++|.++.+|. .+..+++|+ .+++++|.+.+..+.. +.+.
T Consensus 132 --~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 132 --AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp --CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred --cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence 6666654 56677777777777777777765543 355444444 5666666543221110 0000
Q ss_pred CCCc--ChhhhhccccCceeecC
Q 037045 404 GEMI--SLNIISKLRLLEELIIE 424 (424)
Q Consensus 404 ~~~~--~~~~l~~l~~L~~L~l~ 424 (424)
.... ....++.+++|++|+++
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECC
T ss_pred CceeecCHhHhcccccccEEEcc
Confidence 1111 12235788899988874
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=132.93 Aligned_cols=127 Identities=26% Similarity=0.395 Sum_probs=67.4
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCCcCCh-hhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIGCLPP-SISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~-~~~~l~~L~~l~ 338 (424)
++|+.|++++|.++.++. +..+++|+.|++++|.++.++...+..+++|+.|++++| .+..++. .+..+++|++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 556666666666665442 355566666666666666555544555555555555553 2233332 355555555555
Q ss_pred ecccccccccCChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccC
Q 037045 339 LRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 339 l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~ 392 (424)
+ +.+.+..+|. +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus 192 L--~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 192 L--AMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp C--TTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred C--CCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 5 4555555542 44555555555555555543 33355555555555555544
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=1.7e-13 Score=133.52 Aligned_cols=130 Identities=19% Similarity=0.334 Sum_probs=115.0
Q ss_pred cceeEEEeeccCCCCC--CCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTL--PDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
++++.|++++|.++.+ ..+..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 7899999999999985 3468999999999999999998877788999999999999999887754 888999999999
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCC-cCcccchh-hhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHT-KVQCLPSE-IGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~~L~~l~l~~n~~~~ 394 (424)
+++.+..+|. .+..+++|+.|++++| .+..+|.. +..+++|++|++++|.+.+
T Consensus 155 --~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 155 --RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp --CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred --CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 8888888876 6889999999999995 48888775 8999999999999998754
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=132.19 Aligned_cols=148 Identities=23% Similarity=0.281 Sum_probs=81.9
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..++ .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 45555555555555432 23445555555555555555555445555555555555555544432 3555555555555
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLL 418 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L 418 (424)
. .++.+..++. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+.+. ....+..+++|
T Consensus 168 ~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L 233 (440)
T 3zyj_A 168 G-ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI------------RPGSFQGLMHL 233 (440)
T ss_dssp C-CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEE------------CTTTTTTCTTC
T ss_pred C-CCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCcc------------ChhhhccCccC
Confidence 2 3344444443 3555666666666666666665 355666666666666654332 23466777888
Q ss_pred ceeecC
Q 037045 419 EELIIE 424 (424)
Q Consensus 419 ~~L~l~ 424 (424)
++|+|+
T Consensus 234 ~~L~L~ 239 (440)
T 3zyj_A 234 QKLWMI 239 (440)
T ss_dssp CEEECT
T ss_pred CEEECC
Confidence 888764
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1.1e-13 Score=113.29 Aligned_cols=122 Identities=23% Similarity=0.236 Sum_probs=73.2
Q ss_pred cceeEEEeeccCCC--CCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhhcccccceee
Q 037045 263 AHTKRLSLFGFPSS--TLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~ 338 (424)
++++.|++++|.+. .+|.. ..+++|+.|++++|.++.. ..+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56677777777666 34433 5666677777776666665 225566666666666666644 455455566666666
Q ss_pred ecccccccccCC--hhhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeeec
Q 037045 339 LRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRVS 388 (424)
Q Consensus 339 l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l~ 388 (424)
+ +++.+..+| ..++.+++|+.|++++|.++.+|. .+..+++|++|+++
T Consensus 95 l--s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 L--SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp C--TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred C--CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6 555555543 455666666666666666655544 35556666665544
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1.3e-13 Score=112.76 Aligned_cols=129 Identities=22% Similarity=0.214 Sum_probs=108.2
Q ss_pred CcccccEEEccCCCCC--CCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccccccccc-CChhhhccCCC
Q 037045 283 NCCEILTLILEGKRLE--KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ-LPAEIGRLQKL 359 (424)
Q Consensus 283 ~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~-lp~~~~~l~~L 359 (424)
..++|+.|++++|.++ .++.. +..+++|++|++++|.+..+ ..++.+++|++|++ +++.+.. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLEL--SDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEEC--CSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEEC--CCCcccchHHHHhhhCCCC
Confidence 4578999999999998 56653 68899999999999999776 77899999999999 8888887 78778889999
Q ss_pred CEEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 360 EILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 360 ~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+.|++++|.++.+| ..+..+++|++|++++|.+.+..+ .....++.+++|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND---------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---------HHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH---------HHHHHHHHCCCcccccCC
Confidence 99999999999875 669999999999999997653210 011468999999999875
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.47 E-value=1.9e-13 Score=138.21 Aligned_cols=131 Identities=27% Similarity=0.265 Sum_probs=113.0
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l 339 (424)
++++.|++++|.++.++ .+..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+ |..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 78899999999998854 468899999999999999988776688899999999999999665 778999999999999
Q ss_pred cccccccccCC-hhhhccCCCCEEEecCCcCc--ccchhhhcCCCCCEeeeccccCCCC
Q 037045 340 RSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 340 ~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
..+.+..+| ..++.+++|++|++++|.+. .+|..++++++|++|++++|.+.+.
T Consensus 112 --~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 112 --VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp --TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred --cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 788887776 57889999999999999977 5788899999999999999977553
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1e-13 Score=140.78 Aligned_cols=131 Identities=27% Similarity=0.283 Sum_probs=117.7
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
++++.|++++|.++.+| .+..+++|++|++++|.++.+++..|..+++|++|++++|++..+|+ .|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 68999999999999965 46899999999999999999988888999999999999999988875 5899999999999
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCCCC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
..+.+..+|. .++.+++|+.|++++|.++. +|..++.+++|++|++++|.+.+.
T Consensus 132 --s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 --VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp --TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred --CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 8888888876 58999999999999999874 577789999999999999987654
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=1.6e-13 Score=131.02 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=96.4
Q ss_pred ccceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceee
Q 037045 262 DAHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALF 338 (424)
Q Consensus 262 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~ 338 (424)
.++++.|+++++.+..+|. +..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+| ..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 3677888888887777665 366778888888888887776655777788888888888775554 4467788888888
Q ss_pred ecccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCC
Q 037045 339 LRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENV 393 (424)
Q Consensus 339 l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~ 393 (424)
+ .++.+..+|.. ++.+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 124 L--~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 124 L--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp C--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred C--CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 8 67777777765 46778888888888877766443 777788888888887654
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=129.20 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=110.3
Q ss_pred cceeEEEeeccCCCCCCC--Cc-CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MP-NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~ 338 (424)
+.++.|++++|.++.++. +. .+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+ .+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 668899999999998653 34 88999999999999998887778889999999999999977764 588999999999
Q ss_pred ecccccccccC-ChhhhccCCCCEEEecCCcCcccchhh----hcCCCCCEeeeccccCCC
Q 037045 339 LRSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSEI----GQLIELKYLRVSRVENVG 394 (424)
Q Consensus 339 l~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~l~l~~n~~~~ 394 (424)
+ +++.+..+ |..+..+++|+.|++++|.++.+|..+ ..+++|++|++++|.+.+
T Consensus 119 L--~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 119 L--YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp C--CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred C--CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9 78888876 557889999999999999999998874 578999999999997653
No 57
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=1.6e-12 Score=121.96 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC------CHHHHHHHHHHHhccc--------------c-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG------NIRDIQEIILERLKVN--------------A- 60 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~~--------------~- 60 (424)
+++.|+|+.|+|||||++++++.. . .+|+++.... +...+...+...+... .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER--P-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS--S-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc--C-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 478999999999999999999875 1 7788876542 5666777776665430 0
Q ss_pred ----cccChhHHHHHHHHHhcc-CcEEEEEcCCCCcch---------hhhh-ccCCCCCCcEEEEEecchhh-h------
Q 037045 61 ----KELNNDLRADIISKELND-RSYVLFLDGVSSEIN---------FKEI-GMHDDHGRGKVVFACRSREF-C------ 118 (424)
Q Consensus 61 ----~~~~~~~~~~~l~~~l~~-~~~LlvlD~~~~~~~---------~~~~-~~~~~~~~~~iiittr~~~~-~------ 118 (424)
...+..+....+.+.... ++++|||||++.... +..+ .......+..+|+|++.... .
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~ 184 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKIT 184 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhc
Confidence 112334445555554443 489999999987543 1222 11122257889999876532 1
Q ss_pred c-------ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 119 W-------QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 119 ~-------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
. .....+++.+|+.+|+.+++.+...... ....++.+..|++.++|+|+++..++..+
T Consensus 185 ~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~--~~~~~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 185 DYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN--LDVPENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp CTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1 1124789999999999999987654321 11224567889999999999999988754
No 58
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.46 E-value=2e-13 Score=141.73 Aligned_cols=148 Identities=23% Similarity=0.313 Sum_probs=97.0
Q ss_pred cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l 339 (424)
++++.|++++|.+.. +| .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ +.+|..++.+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 456666666666553 33 345666777777777777654444466667777777777766 456666777777777777
Q ss_pred cccccccc-cCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 340 RSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 340 ~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
.++.+. .+|..++.+++|+.|++++|+++ .+|..++.+++|++|++++|.+.|.. +..++.+++
T Consensus 474 --~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~------------p~~l~~l~~ 539 (768)
T 3rgz_A 474 --DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI------------PAELGDCRS 539 (768)
T ss_dssp --CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC------------CGGGGGCTT
T ss_pred --cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC------------CHHHcCCCC
Confidence 444444 56666777777777777777766 66666777777777777777665443 346778888
Q ss_pred CceeecC
Q 037045 418 LEELIIE 424 (424)
Q Consensus 418 L~~L~l~ 424 (424)
|++|+|+
T Consensus 540 L~~L~Ls 546 (768)
T 3rgz_A 540 LIWLDLN 546 (768)
T ss_dssp CCEEECC
T ss_pred CCEEECC
Confidence 8888764
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.46 E-value=8.1e-13 Score=124.00 Aligned_cols=142 Identities=19% Similarity=0.292 Sum_probs=67.6
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|++|++++|.+..++.+..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|+++++ .
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l--~ 140 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL--G 140 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC--T
T ss_pred CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEEC--C
Confidence 4444444444444444334444445555555444444432 3444445555555444444333 444444555554 3
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+.....+..+..+++|+.|++++|.+..++. +..+++|++|++++|.+ ..+..+..+++|++|+
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l--------------~~~~~~~~l~~L~~L~ 205 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI--------------EDISPLASLTSLHYFT 205 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC--------------CCCGGGGGCTTCCEEE
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc--------------cccccccCCCccceee
Confidence 33222222224444555555555554444432 44555555555555532 3334467777777776
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 206 l~ 207 (347)
T 4fmz_A 206 AY 207 (347)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=8.7e-14 Score=123.49 Aligned_cols=125 Identities=17% Similarity=0.260 Sum_probs=50.3
Q ss_pred ceeEEEeeccCCCCCCC--CcCcccccEEEccCCC-CCCCChHHhcccCCCcEEEccC-CCCCcCC-hhhhcccccceee
Q 037045 264 HTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKR-LEKLPTSFFDYMCHLQLLDLHE-TNIGCLP-PSISRLINLNALF 338 (424)
Q Consensus 264 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-~~~~~~p-~~~~~l~~L~~l~ 338 (424)
+++.|++++|.++.++. +..+++|+.|++++|. ++.+++..+..+++|++|++++ |.+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444444322 2334444444444443 4444333334444444444443 3443333 2233444444444
Q ss_pred ecccccccccCChhhhccCCCC---EEEecCC-cCcccchh-hhcCCCCC-Eeeecccc
Q 037045 339 LRSSCSLLLQLPAEIGRLQKLE---ILDVSHT-KVQCLPSE-IGQLIELK-YLRVSRVE 391 (424)
Q Consensus 339 l~~~~~~~~~lp~~~~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~l~l~~n~ 391 (424)
+ .++.+..+|. ++.+++|+ .|++++| .++.+|.. +..+++|+ .+++++|.
T Consensus 112 l--~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 I--FNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp E--EEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred C--CCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 4 3333333433 33333333 4444444 34433332 33444444 44444443
No 61
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=5.8e-14 Score=118.43 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=110.1
Q ss_pred CCCCcCcccccEEEccCCCCCCCChHHhccc-CCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhh-hc
Q 037045 278 LPDMPNCCEILTLILEGKRLEKLPTSFFDYM-CHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEI-GR 355 (424)
Q Consensus 278 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~-~~ 355 (424)
.+....+++|+.|++++|.++.++. +..+ ++|++|++++|.+..+ ..++.+++|++|++ +++.+..+|+.+ +.
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~L--s~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV--NNNRICRIGEGLDQA 86 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEEC--CSSCCCEECSCHHHH
T ss_pred HHhcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEEC--CCCcccccCcchhhc
Confidence 4556778999999999999998854 3444 4999999999999777 67899999999999 889999888665 89
Q ss_pred cCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 356 LQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 356 l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+++|+.|++++|.++.+|. .+..+++|++|++++|++... .......++.+++|++|+++
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~---------~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK---------KHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS---------TTHHHHHHHHCTTCSEETTE
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc---------HhHHHHHHHHCCccceeCCC
Confidence 9999999999999999987 689999999999999976421 11112248899999999863
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=1.6e-13 Score=121.81 Aligned_cols=147 Identities=10% Similarity=0.104 Sum_probs=124.4
Q ss_pred cceeEEEeeccC-CCCCC--CCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccc---
Q 037045 263 AHTKRLSLFGFP-SSTLP--DMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN--- 335 (424)
Q Consensus 263 ~~l~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~--- 335 (424)
++|+.|++++|. ++.++ .+..+++|+.|++++ |.++.++...+..+++|++|++++|.+..+|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~ 133 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFF 133 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccccccc
Confidence 899999999997 88765 358899999999998 99999888778889999999999999988887 88888888
Q ss_pred eeeeccccc-ccccCCh-hhhccCCCC-EEEecCCcCcccchhhhcCCCCCEeeecccc-CCCCcccCCCCCCCCcChhh
Q 037045 336 ALFLRSSCS-LLLQLPA-EIGRLQKLE-ILDVSHTKVQCLPSEIGQLIELKYLRVSRVE-NVGNHTHADAGSGEMISLNI 411 (424)
Q Consensus 336 ~l~l~~~~~-~~~~lp~-~~~~l~~L~-~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~ 411 (424)
++++ +.+ .+..+|. .+..+++|+ .|++++|.++.+|......++|++|++++|. +.+. ....
T Consensus 134 ~L~l--~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i------------~~~~ 199 (239)
T 2xwt_C 134 ILEI--TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI------------DKDA 199 (239)
T ss_dssp EEEE--ESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEE------------CTTT
T ss_pred EEEC--CCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccC------------CHHH
Confidence 9999 666 8888876 488999999 9999999999998875455899999999995 5321 2235
Q ss_pred hhcc-ccCceeecC
Q 037045 412 ISKL-RLLEELIIE 424 (424)
Q Consensus 412 l~~l-~~L~~L~l~ 424 (424)
++.+ ++|++|+++
T Consensus 200 ~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 200 FGGVYSGPSLLDVS 213 (239)
T ss_dssp TTTCSBCCSEEECT
T ss_pred hhccccCCcEEECC
Confidence 6777 889999875
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=1.8e-13 Score=142.19 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=118.6
Q ss_pred cceeEEEeeccCCCC------------------CCCC-c--CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-
Q 037045 263 AHTKRLSLFGFPSST------------------LPDM-P--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN- 320 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~- 320 (424)
++|+.|++++|.++. +|.. . .+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 789999999999988 6643 5 79999999999998775444558889999999999997
Q ss_pred CC--cCChhhhccc-------ccceeeecccccccccCCh--hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecc
Q 037045 321 IG--CLPPSISRLI-------NLNALFLRSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389 (424)
Q Consensus 321 ~~--~~p~~~~~l~-------~L~~l~l~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~ 389 (424)
+. .+|..++.+. +|+.|++ +++.+..+|. .++.+++|+.|++++|.++.+| .++.+++|+.|++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~L--s~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYM--GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEEC--CSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEe--eCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence 74 5888777776 9999999 7888889998 8999999999999999988888 788999999999999
Q ss_pred ccCCCCcccCCCCCCCCcChhhhhcccc-CceeecC
Q 037045 390 VENVGNHTHADAGSGEMISLNIISKLRL-LEELIIE 424 (424)
Q Consensus 390 n~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~ 424 (424)
|.+. .+| ..++++++ |++|+|+
T Consensus 605 N~l~-~lp------------~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 605 NQIE-EIP------------EDFCAFTDQVEGLGFS 627 (876)
T ss_dssp SCCS-CCC------------TTSCEECTTCCEEECC
T ss_pred Cccc-cch------------HHHhhccccCCEEECc
Confidence 9765 333 24555665 6666553
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=136.18 Aligned_cols=130 Identities=27% Similarity=0.294 Sum_probs=109.1
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l 339 (424)
++++.|++++|.++.++ .+..+++|+.|++++|.++++++..+..+++|++|++++|.+..+| ..++.+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 67889999999988754 4588899999999999998887777888899999999999886655 67888999999999
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~~ 394 (424)
..+.+..+|. .++.+++|++|++++|.++. +|..++++++|++|++++|.+.+
T Consensus 108 --~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 108 --VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp --TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred --cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 7788887775 68888999999999998774 68888999999999999987654
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=1.6e-13 Score=137.16 Aligned_cols=134 Identities=20% Similarity=0.287 Sum_probs=107.8
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
+++++|++++|.++.++ .+..+++|++|++++|.+++.++..+..+++|++|++++|.+..+|+. ++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 67889999999888743 458888899999999998887766678888999999999988777654 888899999999
Q ss_pred ccccccccc--CChhhhccCCCCEEEecCCc-Ccccch-hhhcCCCCCEeeeccccCCCCccc
Q 037045 340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTK-VQCLPS-EIGQLIELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~~ 398 (424)
+++.+.. .|..++.+++|+.|++++|. +..+|. .+..+++|++|++++|.+.+..|.
T Consensus 106 --s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 106 --MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp --TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred --CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 7777764 46678888899999998887 667764 588888899999998887665443
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.44 E-value=9.9e-13 Score=128.02 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=74.3
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.++.+|.+..+++|+.|++++|.+++++ +..+++|++|++++|.+..+| ++.+++|++|++ +
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L--~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC--D 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC--C
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC--C
Confidence 566667777766666666666666777777766666654 455666666666666665553 566666666666 5
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~ 391 (424)
.+.+..+| ++.+++|+.|++++|.++.+| ++.+++|++|++++|.
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS
T ss_pred CCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC
Confidence 55665554 566666666666666666553 4555555555555554
No 67
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=3.5e-12 Score=119.97 Aligned_cols=211 Identities=10% Similarity=0.082 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-----CCHHHHHHHHHHHhcc------------------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-----GNIRDIQEIILERLKV------------------ 58 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~------------------ 58 (424)
+++.|+|++|+|||||++++++... . ..+|+++... .+...+...+.+.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 105 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI 105 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence 4789999999999999999999873 2 2688887653 3555666655554421
Q ss_pred cc-----c-------ccChhHHHHHHHHHhccCcEEEEEcCCCCcch-----h-hhh-ccCCCCCCcEEEEEecchhhh-
Q 037045 59 NA-----K-------ELNNDLRADIISKELNDRSYVLFLDGVSSEIN-----F-KEI-GMHDDHGRGKVVFACRSREFC- 118 (424)
Q Consensus 59 ~~-----~-------~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~-----~-~~~-~~~~~~~~~~iiittr~~~~~- 118 (424)
.. . ..........+.+... ++++|||||++.... + ..+ .+.....+..+|+|++.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~ 184 (357)
T 2fna_A 106 VIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY 184 (357)
T ss_dssp EECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred EecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence 00 0 1122233333333211 489999999987432 1 112 111222467899999875321
Q ss_pred ------c------cc-CceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchH
Q 037045 119 ------W------QA-DGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVA 185 (424)
Q Consensus 119 ------~------~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~ 185 (424)
. .. ...+.+.+|+.+|+.+++............. ...|++.|+|+|+++..++..+....+..
T Consensus 185 ~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~ 260 (357)
T 2fna_A 185 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLD 260 (357)
T ss_dssp HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchH
Confidence 1 11 3578999999999999998865422111222 16799999999999999987764322333
Q ss_pred HHHHH-HHHhhhcCcccccchhhhhHHHhhhh---ccCCcchHhHHhhhhh
Q 037045 186 IWRAT-ADELRLTSSEEKKELEEVDRFFTLVY---KNLSLEQQHCLLGWAI 232 (424)
Q Consensus 186 ~~~~~-~~~l~~~~~~~~~~~~~i~~~l~~s~---~~L~~~~k~~~~~la~ 232 (424)
.|... .+.... .+...+...+ ..+++..+.++..+|.
T Consensus 261 ~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 261 FAINQTLEYAKK----------LILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 33221 111100 1111121111 1577778888888887
No 68
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.1e-13 Score=112.96 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=107.8
Q ss_pred CcccccEEEccCCCCC--CCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccccccccc-CChhhhccCCC
Q 037045 283 NCCEILTLILEGKRLE--KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ-LPAEIGRLQKL 359 (424)
Q Consensus 283 ~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~-lp~~~~~l~~L 359 (424)
..++|+.|++++|.++ .++.. +..+++|++|++++|.+..+ ..++.+++|++|++ +++.+.. +|..+..+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLEL--SENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEE--ESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEEC--cCCcCchHHHHHHhhCCCC
Confidence 3478999999999998 66654 68899999999999999776 77899999999999 7888876 77778889999
Q ss_pred CEEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 360 EILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 360 ~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+.|++++|.++.+| ..+..+++|++|++++|.+.+..+ .....+..+++|++|+++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND---------YRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---------HHHHHHTTCSSCCEETTE
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH---------HHHHHHHhCccCcEecCC
Confidence 99999999999886 568999999999999998653211 111368899999999873
No 69
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=9.9e-13 Score=110.92 Aligned_cols=129 Identities=22% Similarity=0.339 Sum_probs=110.5
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~ 344 (424)
+.++++++.+..+|.. -.++|+.|++++|.++.++...+..+++|++|++++|.+..+|+. +..+++|++|++ +++
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL--HEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC--CCC
Confidence 5788889998887742 347899999999999998887778899999999999999777654 689999999999 888
Q ss_pred ccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcc
Q 037045 345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
.+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88888764 68899999999999999988877 5889999999999998776543
No 70
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=1.3e-13 Score=124.24 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=120.8
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
.++..+++.++.++.++....+++|+.|++++|.++.++. +..+++|+.|++++|.+..+|+ +..+++|++|++ +
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L--~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV--N 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC--C
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC--C
Confidence 3445566777888887777899999999999999999883 7889999999999999988877 999999999999 8
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..+|.... ++|+.|++++|.++.+| .+..+++|+.|++++|.+. .+..++.+++|++|+
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~--------------~~~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK--------------SIVMLGFLSKLEVLD 156 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC--------------BCGGGGGCTTCCEEE
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC--------------CChHHccCCCCCEEE
Confidence 899988876443 89999999999999986 5999999999999999754 235788999999998
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 157 L~ 158 (263)
T 1xeu_A 157 LH 158 (263)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.43 E-value=1.4e-12 Score=124.41 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=92.1
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..++ .+..+++|+.|++++|.++..++..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 67888888888887743 457788888888888888887776677788888888888888777765 577888888888
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~ 391 (424)
+++.+..++. .++.+++|+.|++++|.++.++ +..+++|+++++++|.
T Consensus 149 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 149 --SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp --CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred --CCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence 6777766643 5777888888888888877664 3444555555444443
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=1e-12 Score=132.59 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=87.2
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..++ .+..+++|+.|++++|.++++++..+..+++|++|++++|.+..+|+. ++.+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 67778888887777743 457777788888888888777776667777888888888877766655 477778888887
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~ 391 (424)
+++.+..+++ .++.+++|+.|++++|.++.+| ++.+++|++|++++|.
T Consensus 155 --s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 155 --SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp --CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred --eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 6666665543 5777778888888877777664 3444555554444443
No 73
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=1.5e-12 Score=122.19 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=114.5
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|++|++++|.+..++.+..+++|+.|++++|.++..+. +..+++|+.|++++|.....++.+..+++|++|++ .
T Consensus 88 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l--~ 163 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV--T 163 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC--C
T ss_pred CcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEe--c
Confidence 7889999999988888878888899999999998888776 67788899999998865334445888889999998 7
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
++.+..++. +..+++|+.|++++|.+..++. +..+++|+.+++++|.+. .+..++.+++|++|+
T Consensus 164 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~~L~~L~ 227 (347)
T 4fmz_A 164 ESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT--------------DITPVANMTRLNSLK 227 (347)
T ss_dssp SSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC--------------CCGGGGGCTTCCEEE
T ss_pred CCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC--------------CCchhhcCCcCCEEE
Confidence 777777765 7788889999999988888865 788888999999888643 223377888888888
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 228 l~ 229 (347)
T 4fmz_A 228 IG 229 (347)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=6.4e-13 Score=131.83 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=102.0
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~ 344 (424)
++|++++|.++.+|.... ++|+.|++++|.+++.++..+..+++|++|++++|.+..+ |..++.+++|++|++ +++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL--SHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC--CSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec--CCC
Confidence 578888998888775332 7899999999999988877788889999999999988665 667888999999999 788
Q ss_pred ccccCChhhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCC
Q 037045 345 LLLQLPAEIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 345 ~~~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
.+..+|.. .+++|++|++++|.++. +|..++++++|++|++++|.+.
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 88888876 78899999999998775 5677889999999999988754
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=5.5e-13 Score=125.89 Aligned_cols=147 Identities=20% Similarity=0.155 Sum_probs=118.3
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhc-ccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSC 343 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~ 343 (424)
+.++++++.++.+|.. -...++.|++++|.++.++...+. .+++|+.|++++|.+..++ ..+..+++|++|++ +.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L--s~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL--SS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC--CC
Confidence 5789999999988753 234689999999999998887676 8999999999999997776 56999999999999 88
Q ss_pred cccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCcee
Q 037045 344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL 421 (424)
Q Consensus 344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 421 (424)
+.+..+|. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+. | ...+..++.+++|++|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~--------~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF-P--------VELIKDGNKLPKLMLL 168 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC-C--------GGGTC----CTTCCEE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee-C--------HHHhcCcccCCcCCEE
Confidence 88888876 588999999999999999977 44599999999999999987642 1 1222233667788887
Q ss_pred ecC
Q 037045 422 IIE 424 (424)
Q Consensus 422 ~l~ 424 (424)
+|+
T Consensus 169 ~L~ 171 (361)
T 2xot_A 169 DLS 171 (361)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=6.4e-13 Score=134.88 Aligned_cols=143 Identities=25% Similarity=0.245 Sum_probs=121.1
Q ss_pred EEEeeccCCCCCCCCcCc-ccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeeccccc
Q 037045 267 RLSLFGFPSSTLPDMPNC-CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCS 344 (424)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~ 344 (424)
+.+.++..++.+|. .+ ++++.|++++|.++.+++..|..+++|++|++++|.+..+|+ .|..+++|++|++ +++
T Consensus 35 ~~~c~~~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~L--s~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL--TGN 110 (635)
T ss_dssp EEECTTSCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC--TTC
T ss_pred EEECCCCCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEc--cCC
Confidence 45666667777764 23 379999999999999998779999999999999999988765 6899999999999 888
Q ss_pred ccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+..+|. .+..+++|++|++++|.++.+|.. ++++++|++|++++|.+.+ ......++.+++|++|+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----------FKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----------CCCCGGGGGCTTCCEEE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc-----------CCCchhhccchhhhhhc
Confidence 9999886 578999999999999999998875 8999999999999997643 23445678888888888
Q ss_pred cC
Q 037045 423 IE 424 (424)
Q Consensus 423 l~ 424 (424)
++
T Consensus 180 L~ 181 (635)
T 4g8a_A 180 LS 181 (635)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=5.1e-13 Score=131.07 Aligned_cols=147 Identities=26% Similarity=0.310 Sum_probs=77.9
Q ss_pred cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..+ | .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 4555555555555542 2 234555555555555555555554445555555555555555332 334555555555555
Q ss_pred cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
..+.+..+ |..+..+++|+.|++++|.++.+|.. +.++++|+.|++++|.+.+. ....+..+++
T Consensus 136 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~l~~ 201 (477)
T 2id5_A 136 --GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI------------RDYSFKRLYR 201 (477)
T ss_dssp --CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE------------CTTCSCSCTT
T ss_pred --CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe------------ChhhcccCcc
Confidence 44444433 23455555556666655555555443 55555666666665544321 1224566777
Q ss_pred Cceeec
Q 037045 418 LEELII 423 (424)
Q Consensus 418 L~~L~l 423 (424)
|++|++
T Consensus 202 L~~L~l 207 (477)
T 2id5_A 202 LKVLEI 207 (477)
T ss_dssp CCEEEE
T ss_pred cceeeC
Confidence 777765
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=130.91 Aligned_cols=130 Identities=18% Similarity=0.288 Sum_probs=69.6
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..+|. +..+++|+.|++++|.++..++..+..+++|+.|++++|.+..+ |..+..+++|+.|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 455555555555555442 24555555566655555554444455555555555555555333 334555555555555
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCC
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~ 394 (424)
..+.+..+|. .+..+++|+.|++++|.+..++. .+..+++|++|++++|...+
T Consensus 160 --~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 160 --EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp --ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred --CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 4555555543 35555555555555555554433 25555555555555554433
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=3.9e-13 Score=135.60 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=117.9
Q ss_pred hccccceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccc
Q 037045 259 KIGDAHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLN 335 (424)
Q Consensus 259 d~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~ 335 (424)
++..++++.++++++.+..+|. +..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+ .++.+++|+
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3344889999999999998775 4789999999999999999887668999999999999999976654 579999999
Q ss_pred eeeecccccccccCChh-hhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCC
Q 037045 336 ALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 336 ~l~l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~ 394 (424)
+|++ +++.+..+|.. ++.+++|+.|++++|.++.+|+ .+..+++|++|++++|.+.+
T Consensus 127 ~L~L--~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 127 VLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEEe--eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 9999 88899999876 5899999999999999987765 48999999999999998754
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=1.7e-12 Score=120.93 Aligned_cols=146 Identities=13% Similarity=0.198 Sum_probs=74.8
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCC---cCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG---CLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~---~~p~~~~~l~~L~~l~l 339 (424)
++|++|++++|.++.+|... .++|+.|++++|.++..+...+..+++|+.|++++|.+. ..+..+..+++|++|++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 45555555555555544321 145555555555555555554555566666666665552 23344555555555555
Q ss_pred cccccccccCCh----------------------hhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCc
Q 037045 340 RSSCSLLLQLPA----------------------EIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNH 396 (424)
Q Consensus 340 ~~~~~~~~~lp~----------------------~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~ 396 (424)
..+.+..+|. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 179 --~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 253 (330)
T 1xku_A 179 --ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--- 253 (330)
T ss_dssp --CSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---
T ss_pred --CCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---
Confidence 4444444443 34444445555555544443332 2444445555555554332
Q ss_pred ccCCCCCCCCcChhhhhccccCceeecC
Q 037045 397 THADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.....+..+++|++|+++
T Consensus 254 ----------~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 254 ----------KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp ----------SCCTTTTTCSSCCEEECC
T ss_pred ----------cCChhhccCCCcCEEECC
Confidence 223356777777777764
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.42 E-value=1.7e-12 Score=127.03 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=59.0
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.+..++.+..+++|+.|++++|.+++.++ +..+++|+.|++++|.+..+|+ +..+++|+.|++ .
T Consensus 221 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L--~ 295 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLEL--N 295 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC--C
T ss_pred CCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEc--C
Confidence 4455555555555444444445555555555555554443 3444555555555554444333 444555555555 4
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~ 392 (424)
++.+..++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 296 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 296 ENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp SSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence 444444433 4444555555555554444332 44444555555555443
No 82
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1.1e-12 Score=130.72 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=83.5
Q ss_pred cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEec
Q 037045 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVS 365 (424)
Q Consensus 286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~ 365 (424)
.|+.|++++|.++++|. +..+++|+.|++++|.+..+|..++.+++|++|++ ++|.+..+| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L--s~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA--SDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC--CSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEEC--CCCCCCCCc-ccCCCCCCcEEECC
Confidence 36667777777776654 56677777777777777777777777777777777 666666666 67777777777777
Q ss_pred CCcCccc--chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 366 HTKVQCL--PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 366 ~~~i~~l--p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
+|.++.+ |..++.+++|+.|++++|.+.+..+ .....+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG---------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS---------CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc---------HHHHHHHHCcccCccCC
Confidence 7777766 6667777777777777776654311 22233455677777654
No 83
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.41 E-value=1.9e-13 Score=138.79 Aligned_cols=127 Identities=15% Similarity=0.248 Sum_probs=82.9
Q ss_pred cceeEEEeeccCCCC------------------CCC-Cc--CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-
Q 037045 263 AHTKRLSLFGFPSST------------------LPD-MP--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN- 320 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~- 320 (424)
++|+.|++++|.++. +|. +. .+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 567777777777766 553 34 57777777777776664333336667777777777776
Q ss_pred CC--cCChhhhcc------cccceeeecccccccccCCh--hhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeecc
Q 037045 321 IG--CLPPSISRL------INLNALFLRSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSR 389 (424)
Q Consensus 321 ~~--~~p~~~~~l------~~L~~l~l~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~ 389 (424)
+. .+|..++.+ ++|++|++ ..+.+..+|. .++.+++|+.|++++|.++ .+| .++.+++|++|++++
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L--~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYI--GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEEC--CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CccccchHHHHhhhccccCCCCCEEEC--CCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 53 466666665 67777777 5666666666 6667777777777777666 666 566666666666666
Q ss_pred ccC
Q 037045 390 VEN 392 (424)
Q Consensus 390 n~~ 392 (424)
|.+
T Consensus 363 N~l 365 (636)
T 4eco_A 363 NQI 365 (636)
T ss_dssp SEE
T ss_pred Ccc
Confidence 654
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=127.94 Aligned_cols=128 Identities=19% Similarity=0.243 Sum_probs=106.9
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh--hhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--SISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~~~l~~L~~l~ 338 (424)
++|+.|++++|.++.++ .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 78999999999988853 36888999999999999999988878889999999999999888876 688899999999
Q ss_pred eccccc-ccccCC-hhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccC
Q 037045 339 LRSSCS-LLLQLP-AEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 339 l~~~~~-~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~ 392 (424)
+ +++ .+..++ ..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 156 l--~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 156 V--GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp E--EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred C--CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 9 454 566664 5688889999999999988755 66688888888888888864
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=8.8e-13 Score=121.92 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=104.2
Q ss_pred cceeEEEeeccCCCC-CCC-C--cCcccccEEEccCCCCCCCChHHhccc-----CCCcEEEccCCCCCcCC-hhhhccc
Q 037045 263 AHTKRLSLFGFPSST-LPD-M--PNCCEILTLILEGKRLEKLPTSFFDYM-----CHLQLLDLHETNIGCLP-PSISRLI 332 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~~-~--~~~~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~~~~~~~p-~~~~~l~ 332 (424)
++|++|++++|.+.. .|. + ..+++|+.|++++|.+++.|.. +..+ ++|++|++++|.+..++ ..++.++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 789999999999985 454 3 7899999999999999988654 5555 89999999999996665 6789999
Q ss_pred ccceeeecccccccc-c--CChhh--hccCCCCEEEecCCcCcccc---hh-hhcCCCCCEeeeccccCCCC
Q 037045 333 NLNALFLRSSCSLLL-Q--LPAEI--GRLQKLEILDVSHTKVQCLP---SE-IGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 333 ~L~~l~l~~~~~~~~-~--lp~~~--~~l~~L~~L~l~~~~i~~lp---~~-i~~l~~L~~l~l~~n~~~~~ 395 (424)
+|++|++ +++.+. . +|..+ +.+++|+.|++++|.++.+| .. +..+++|++|++++|.+.+.
T Consensus 174 ~L~~L~L--s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 174 ALSTLDL--SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp SCCEEEC--CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCCEEEC--CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 9999999 666543 3 34455 78899999999999988543 33 45778999999999987664
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.41 E-value=9.1e-13 Score=135.10 Aligned_cols=131 Identities=19% Similarity=0.210 Sum_probs=102.2
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l 339 (424)
+++++|++++|.+..++. +..+++|+.|++++|.+++.++..+..+++|++|++++|.+..+|+ .++.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 678888888888887653 5778888888888888888777667788888888888888877775 5888888888888
Q ss_pred cccccccccCC-hhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCC
Q 037045 340 RSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 340 ~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
+.+.+..+| ..++.+++|++|++++|.++.. |..++++++|++|++++|.+.+.
T Consensus 105 --~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 105 --MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp --CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred --CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 677777665 4678888888888888887754 44477888888888888876543
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=1e-13 Score=128.52 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=72.2
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHh-cccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFF-DYMCHLQLLDLHETNIGCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.++.++ .+..+++|+.|++++|.++..+...+ ..+++|++|++++|.+..+|. ...+++|++|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEEC
Confidence 45566666666655532 23455566666666666665433222 345566666666666544432 223566666666
Q ss_pred cccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045 340 RSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 340 ~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~ 392 (424)
+++.+..+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+
T Consensus 199 --s~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 199 --SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp --CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred --CCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 555666665556666666666666666666665566666666666666654
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=3.7e-13 Score=132.17 Aligned_cols=127 Identities=16% Similarity=0.137 Sum_probs=68.8
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhh-cccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSIS-RLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~-~l~~L~~l~l~ 340 (424)
++|+.|++++|.+..++. ..+++|+.|++++|.+++.++..+..+++|++|++++|.+.. .|..+. .+++|++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L- 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL- 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC-
T ss_pred CCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec-
Confidence 445555555555554322 234556666666666665544445555666666666665533 333443 4566666666
Q ss_pred ccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
+++.+..+|. ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.+.
T Consensus 177 -s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 177 -QYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp -TTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred -CCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 5555555443 22355666666666666655555556666666666666543
No 89
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.40 E-value=4.5e-13 Score=135.46 Aligned_cols=131 Identities=19% Similarity=0.157 Sum_probs=84.6
Q ss_pred cceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..+| .+..+++|+.|++++|.+++.++ ..+..+++|++|++++|.+ ...|..++.+++|++|++
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 56666666666666544 34666777777777777766544 3456677777777777776 334556677777777777
Q ss_pred ccccccccc--CChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCC
Q 037045 340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
+++.+.. +|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+.
T Consensus 456 --~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 456 --AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp --TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred --CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence 5555543 466666777777777777776644 33466777777777777765443
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.4e-12 Score=111.55 Aligned_cols=129 Identities=17% Similarity=0.282 Sum_probs=109.4
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChH-HhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeecccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTS-FFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSC 343 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~ 343 (424)
+.++++++.++.+|... ..+|+.|++++|.++.+++. .+..+++|++|++++|.+..+ |..+..+++|++|++ +.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--s~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL--GE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC--CC
Confidence 67899999998887532 23899999999999988764 477899999999999999665 678999999999999 88
Q ss_pred cccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcc
Q 037045 344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
+.+..++. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+.-+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887765 588899999999999998865 6568999999999999999876644
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=1.3e-12 Score=130.43 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=96.0
Q ss_pred cceeEEEeeccCCCC-C----CCCcCcccccEEEccCCCCCCCCh--HHhcccCCCcEEEccCCCCCcCChhhhcccccc
Q 037045 263 AHTKRLSLFGFPSST-L----PDMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~----~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~ 335 (424)
++|+.|++++|.+.. . .....+++|+.|++++|.++.++. ..+..+++|++|++++|.+..+|..+..+++|+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence 566777777776664 1 123556677777777777766543 335666777777777777766666666666777
Q ss_pred eeeecccccccccCChhh------------------hccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcc
Q 037045 336 ALFLRSSCSLLLQLPAEI------------------GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 336 ~l~l~~~~~~~~~lp~~~------------------~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
+|++ +++.+..+|..+ +.+++|+.|++++|+++.+|. ...+++|++|++++|.+.+..
T Consensus 414 ~L~L--s~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~- 489 (549)
T 2z81_A 414 FLNL--SSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVP- 489 (549)
T ss_dssp EEEC--TTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCC-
T ss_pred EEEC--CCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcC-
Confidence 7776 555555544332 256677777777777777775 456777777777777655432
Q ss_pred cCCCCCCCCcChhhhhccccCceeecC
Q 037045 398 HADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 398 ~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
...++.+++|++|+|+
T Consensus 490 -----------~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 490 -----------DGIFDRLTSLQKIWLH 505 (549)
T ss_dssp -----------TTGGGGCTTCCEEECC
T ss_pred -----------HHHHhcCcccCEEEec
Confidence 2257888888888874
No 92
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.5e-12 Score=110.04 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=108.5
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~ 344 (424)
+.++++++.++.+|.. -.++|+.|++++|.++.++.. +..+++|++|++++|.+..++ ..|..+++|++|++ +++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L--s~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL--SYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC--CCC
Confidence 5688899999988753 236899999999999988854 888999999999999997775 56899999999999 888
Q ss_pred ccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCC
Q 037045 345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~ 394 (424)
.+..++. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888865 688999999999999999998876 8899999999999998754
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.40 E-value=3.8e-13 Score=124.63 Aligned_cols=145 Identities=15% Similarity=0.131 Sum_probs=117.3
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhh-hcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSI-SRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~-~~l~~L~~l~l~ 340 (424)
++++.|++++|.+..++. ..+++|+.|++++|.++..++..+..+++|++|++++|.+... |..+ ..+++|++|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L- 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL- 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC-
T ss_pred CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC-
Confidence 677888888888776442 3478899999999999988776678899999999999999665 4445 47899999999
Q ss_pred ccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCce
Q 037045 341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEE 420 (424)
Q Consensus 341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 420 (424)
+++.+..+|.. ..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+ ....+..+++|++
T Consensus 177 -~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-------------l~~~~~~l~~L~~ 241 (317)
T 3o53_A 177 -QYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------------IEKALRFSQNLEH 241 (317)
T ss_dssp -TTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-------------ECTTCCCCTTCCE
T ss_pred -CCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-------------hhhHhhcCCCCCE
Confidence 88888887653 35899999999999999998889999999999999997652 2235677788888
Q ss_pred eecC
Q 037045 421 LIIE 424 (424)
Q Consensus 421 L~l~ 424 (424)
|+++
T Consensus 242 L~l~ 245 (317)
T 3o53_A 242 FDLR 245 (317)
T ss_dssp EECT
T ss_pred EEcc
Confidence 8774
No 94
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=2.5e-12 Score=119.79 Aligned_cols=127 Identities=17% Similarity=0.278 Sum_probs=97.5
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~ 340 (424)
++++.|++++|.++.++. +..+++|++|++++|.++.+.+..+..+++|++|++++|.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l- 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV- 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC-
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC-
Confidence 678888888888887543 5778888888888888887755557778888888888888877776553 67888888
Q ss_pred ccccccccCCh-hhhccCCCCEEEecCCcCc---ccchhhhcCCCCCEeeeccccCC
Q 037045 341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQ---CLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
.++.+..++. .+..+++|+.|++++|.+. ..|..+..+++|++|++++|.+.
T Consensus 129 -~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 129 -HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp -CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred -CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 7777776665 4778888888888888765 33555788888888888888754
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=5.5e-13 Score=123.29 Aligned_cols=144 Identities=18% Similarity=0.101 Sum_probs=71.9
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCC---ChHH-hcccCCCcEEEccCCCCCcCC---h-hhhccc
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKL---PTSF-FDYMCHLQLLDLHETNIGCLP---P-SISRLI 332 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~-~~~~~~L~~L~l~~~~~~~~p---~-~~~~l~ 332 (424)
++|++|++++|.+..++ .+..+++|+.|++++|.+.+. +... +..+++|++|++++|.+..++ . .+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 45555555555555433 234555555555555554321 1110 134455555555555554222 1 123445
Q ss_pred ccceeeecccccccccCC--hhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChh
Q 037045 333 NLNALFLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLN 410 (424)
Q Consensus 333 ~L~~l~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~ 410 (424)
+|++|++ +.+.+...+ ..+..+++|+.|++++|.++.+|..+. ++|++|++++|.+. .++
T Consensus 229 ~L~~L~L--s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~--------------~~p 290 (312)
T 1wwl_A 229 QLQGLDL--SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD--------------RNP 290 (312)
T ss_dssp CCSEEEC--TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC--------------SCC
T ss_pred CCCEEEC--CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC--------------CCh
Confidence 5555555 444444332 223344555555555555555554433 45555555555432 224
Q ss_pred hhhccccCceeecC
Q 037045 411 IISKLRLLEELIIE 424 (424)
Q Consensus 411 ~l~~l~~L~~L~l~ 424 (424)
.+..+++|++|+++
T Consensus 291 ~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 291 SPDELPQVGNLSLK 304 (312)
T ss_dssp CTTTSCEEEEEECT
T ss_pred hHhhCCCCCEEecc
Confidence 47888999999875
No 96
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.39 E-value=1.3e-12 Score=127.41 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=112.4
Q ss_pred cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~ 338 (424)
+++++|++++|.++.+ | .+..+++|++|++++|.+. .+++..+..+++|++|++++|.+... |..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7899999999999984 3 4689999999999999987 56666688899999999999999554 77899999999999
Q ss_pred eccccccccc-CChh--hhccCCCCEEEecCCcCccc-chh-hhcCCCCCEeeeccccCCCCcc
Q 037045 339 LRSSCSLLLQ-LPAE--IGRLQKLEILDVSHTKVQCL-PSE-IGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 339 l~~~~~~~~~-lp~~--~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
+ .++.+.. .|.. ++.+++|+.|++++|.++.+ |.. +.++++|++|++++|.+.+..+
T Consensus 110 L--~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 110 L--TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp C--TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred C--CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 9 7777764 4544 88899999999999998866 555 8899999999999998866544
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=123.75 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=109.3
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCC---CC-hHHhcccCCCcEEEccCCCCCcCChh----hhccc
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEK---LP-TSFFDYMCHLQLLDLHETNIGCLPPS----ISRLI 332 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~---~~-~~~~~~~~~L~~L~l~~~~~~~~p~~----~~~l~ 332 (424)
++|++|++++|.+...+ .+..+++|+.|++++|.+.+ .+ ..++..+++|++|++++|.+..+|.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 78899999999888754 34688889999999988763 22 12235678899999999988665542 46778
Q ss_pred ccceeeecccccccccC-Chhhhcc---CCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045 333 NLNALFLRSSCSLLLQL-PAEIGRL---QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMIS 408 (424)
Q Consensus 333 ~L~~l~l~~~~~~~~~l-p~~~~~l---~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 408 (424)
+|++|++ +++.+... |..++.+ ++|+.|++++|+++.+|..+. ++|++|++++|.+.+
T Consensus 225 ~L~~L~L--s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-------------- 286 (310)
T 4glp_A 225 QPHSLDL--SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-------------- 286 (310)
T ss_dssp CCSSEEC--TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS--------------
T ss_pred CCCEEEC--CCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC--------------
Confidence 8999999 77777765 7777666 689999999999888887664 789999999987643
Q ss_pred hhhhhccccCceeecC
Q 037045 409 LNIISKLRLLEELIIE 424 (424)
Q Consensus 409 ~~~l~~l~~L~~L~l~ 424 (424)
++.+..+++|++|+|+
T Consensus 287 ~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 287 APQPDELPEVDNLTLD 302 (310)
T ss_dssp CCCTTSCCCCSCEECS
T ss_pred CchhhhCCCccEEECc
Confidence 2335778899999875
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=5.6e-13 Score=136.98 Aligned_cols=133 Identities=18% Similarity=0.259 Sum_probs=94.4
Q ss_pred cceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~ 341 (424)
..|+.|++++|.+..+| ....+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+|..++.+++|++|++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L-- 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF-- 300 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC--
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC--
Confidence 66777778777777765 346677777888887777777655 56777788888887777777777777777888877
Q ss_pred cccccccCChhhhccCCCCEEEecCCcCc-ccchhhhcCC-CCCEeeeccccCCCCccc
Q 037045 342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLI-ELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~l~l~~n~~~~~~~~ 398 (424)
++|.+..+|..++.+++|+.|++++|.++ .+|..+..+. .+..+++++|.+.+.+|.
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66777777777777777888888777776 3444454432 223456777777776665
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=2.3e-12 Score=129.06 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=106.0
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeecc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRS 341 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~ 341 (424)
...++++++++.++.+|... .++|+.|++++|.++++++..+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-- 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV-- 107 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC--
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC--
Confidence 34488999999999877532 27899999999999998877788899999999999999665 567899999999999
Q ss_pred cccccccCChhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeeccccCC
Q 037045 342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~ 393 (424)
+++.+..+|.. .+++|+.|++++|.++.+| ..++++++|++|++++|.+.
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 88888888876 7899999999999988654 67899999999999998764
No 100
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=3.1e-12 Score=127.56 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=109.5
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
..++.|++++|.++.+|.+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+| .++.+++|++|++ +
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L--s 516 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLL--C 516 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC--C
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC--C
Confidence 56999999999999999899999999999999999998876 889999999999999998887 8999999999999 8
Q ss_pred ccccccC--ChhhhccCCCCEEEecCCcCcccchh----hhcCCCCCEeee
Q 037045 343 CSLLLQL--PAEIGRLQKLEILDVSHTKVQCLPSE----IGQLIELKYLRV 387 (424)
Q Consensus 343 ~~~~~~l--p~~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~l~l 387 (424)
+|.+..+ |..++.+++|+.|++++|.++.+|+. +..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888887 88999999999999999999987654 345889998864
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=2.3e-12 Score=120.20 Aligned_cols=146 Identities=16% Similarity=0.275 Sum_probs=84.7
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCC---cCChhhhcc--------
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG---CLPPSISRL-------- 331 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~---~~p~~~~~l-------- 331 (424)
++|++|++++|.+..+|.... ++|+.|++++|.++.++...+..+++|+.|++++|.+. ..|..+..+
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred CCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 566666666666665543322 56666666666666666555566666666666666552 223333333
Q ss_pred ------------cccceeeecccccccccCC-hhhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcc
Q 037045 332 ------------INLNALFLRSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 332 ------------~~L~~l~l~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
++|++|++ +.+.+..++ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l--~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---- 254 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHL--DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---- 254 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBC--CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC----
T ss_pred CCCCCccCccccCCCCEEEC--CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe----
Confidence 34444555 444444443 345566666666666666665543 3666666666666666543
Q ss_pred cCCCCCCCCcChhhhhccccCceeecC
Q 037045 398 HADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 398 ~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
.....++.+++|++|+++
T Consensus 255 ---------~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 255 ---------RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp ---------BCCTTGGGCTTCCEEECC
T ss_pred ---------ecChhhhcCccCCEEECC
Confidence 233357888888888874
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.37 E-value=4.9e-12 Score=123.64 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=116.6
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.+...+....+++|+.|++++|.++.++. +..+++|+.|++++|.+...++ +..+++|+.|++ .
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l--~ 273 (466)
T 1o6v_A 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL--G 273 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC--C
T ss_pred CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC--C
Confidence 6778888888887776656777888888888888877653 6678888888888888866655 788888888888 7
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc--------CCCCCCCCcChhhhhc
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH--------ADAGSGEMISLNIISK 414 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~--------~~~~~~~~~~~~~l~~ 414 (424)
++.+..+|. +..+++|+.|++++|.++.+|. +..+++|+.|++++|.+.+..+. .+.+......+..++.
T Consensus 274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~ 351 (466)
T 1o6v_A 274 ANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLAN 351 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred CCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhcc
Confidence 777777766 7788899999999988887765 78889999999999987665442 1112223344466777
Q ss_pred cccCceeecC
Q 037045 415 LRLLEELIIE 424 (424)
Q Consensus 415 l~~L~~L~l~ 424 (424)
+++|++|+++
T Consensus 352 l~~L~~L~l~ 361 (466)
T 1o6v_A 352 LTNINWLSAG 361 (466)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEeCC
Confidence 7778777764
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.9e-12 Score=110.73 Aligned_cols=121 Identities=20% Similarity=0.248 Sum_probs=103.5
Q ss_pred ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh--hhcccccceeeecccccccccC-ChhhhccCCCCEEE
Q 037045 287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS--ISRLINLNALFLRSSCSLLLQL-PAEIGRLQKLEILD 363 (424)
Q Consensus 287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~l~~L~~l~l~~~~~~~~~l-p~~~~~l~~L~~L~ 363 (424)
-+.+++++|.++.+|... ...++.|++++|.+..+++. +..+++|++|++ +++.+..+ |..+..+++|+.|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL--KRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEEC--CCCCCCCcCHhHcCCcccCCEEE
Confidence 488999999999998753 34899999999999887754 899999999999 88888877 67899999999999
Q ss_pred ecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+++|.++.+|.. +..+++|++|++++|.+.+..| ..++.+++|++|+++
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------------GSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT------------TSSTTCTTCCEEECT
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH------------HHhhcCCCCCEEEeC
Confidence 999999977665 8999999999999998765433 367788899999874
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=4.5e-12 Score=129.97 Aligned_cols=129 Identities=22% Similarity=0.195 Sum_probs=112.9
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~ 344 (424)
+.++.+++.++.+|... .++++.|++++|.++++++..+..+++|++|++++|.+..+ |..++.+++|++|++ +.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL--QHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC--CSS
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC--CCC
Confidence 56889999999887532 27899999999999999988789999999999999999555 677899999999999 888
Q ss_pred ccccCCh-hhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcc
Q 037045 345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
.+..+|. .++.+++|+.|++++|.++.+|. .++++++|++|++++|.+.+..+
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 8989987 59999999999999999998864 59999999999999998766543
No 105
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=4.1e-12 Score=125.98 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=113.4
Q ss_pred cceeEEEeeccCCCC-C-CCCcCcccccEEEccCCCCCCCCh--HHhcccCCCcEEEccCCCCCc-CChh-hhcccccce
Q 037045 263 AHTKRLSLFGFPSST-L-PDMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQLLDLHETNIGC-LPPS-ISRLINLNA 336 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~-~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~-~p~~-~~~l~~L~~ 336 (424)
++++.|++++|.+.. . ..+..+++|+.|++++|.+++++. ..+..+++|++|++++|.+.. +|.. +..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 788889999988887 3 345788889999999998886443 447788899999999998855 7754 777888999
Q ss_pred eeeccccccc-ccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcc
Q 037045 337 LFLRSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKL 415 (424)
Q Consensus 337 l~l~~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l 415 (424)
|++ +++.+ +..|..+. ++|+.|++++|.++.+|..+..+++|++|++++|.+.. +|. ..+..+
T Consensus 404 L~L--s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~-----------~~~~~l 467 (520)
T 2z7x_B 404 LNM--SSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPD-----------GIFDRL 467 (520)
T ss_dssp EEC--CSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCT-----------TTTTTC
T ss_pred EEC--cCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCH-----------HHhccC
Confidence 998 66666 45555443 68999999999999999888899999999999997652 222 137788
Q ss_pred ccCceeecC
Q 037045 416 RLLEELIIE 424 (424)
Q Consensus 416 ~~L~~L~l~ 424 (424)
++|++|+++
T Consensus 468 ~~L~~L~l~ 476 (520)
T 2z7x_B 468 TSLQKIWLH 476 (520)
T ss_dssp TTCCEEECC
T ss_pred CcccEEECc
Confidence 899998875
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=3.2e-12 Score=134.17 Aligned_cols=131 Identities=24% Similarity=0.254 Sum_probs=106.4
Q ss_pred cceeEEEeeccCCCCC--CCCcCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTL--PDMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~ 338 (424)
++++.|++++|.++.+ ..+..+++|++|++++|... .+++..+..+++|++|++++|.+..+ |..++.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 7899999999999874 35688999999999988544 56566688899999999999998554 77899999999999
Q ss_pred eccccccccc-CChh--hhccCCCCEEEecCCcCccc--chhhhcCCCCCEeeeccccCCCC
Q 037045 339 LRSSCSLLLQ-LPAE--IGRLQKLEILDVSHTKVQCL--PSEIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 339 l~~~~~~~~~-lp~~--~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~l~l~~n~~~~~ 395 (424)
+ +.+.+.. +|.. ++.+++|+.|++++|.++.+ +..++++++|++|++++|.+.+.
T Consensus 104 L--s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 104 L--YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp C--TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred C--cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 9 6666654 5654 88899999999999998755 34589999999999999987554
No 107
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=1.8e-12 Score=131.07 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=97.2
Q ss_pred cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l 339 (424)
++++.|++++|.++.+ | .+..+++|++|++++|.++...+..+..+++|++|++++|.+..+ |..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5778888888888874 3 457788888888888888877666577888888888888887444 567788888888888
Q ss_pred cccccccccC-ChhhhccCCCCEEEecCCcCcccc-hhhhcCCCCCEeeeccccCC
Q 037045 340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLP-SEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~l~l~~n~~~ 393 (424)
..+.+..+ |..++.+++|+.|++++|.++.++ +.+..+++|++|++++|.+.
T Consensus 113 --~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 113 --IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp --TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred --cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 77777766 456778888888888888877652 23445788888888888654
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=4.8e-13 Score=131.37 Aligned_cols=128 Identities=14% Similarity=0.053 Sum_probs=113.4
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhc-ccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.++.++ .+..+++|+.|++++|.+++.++..+. .+++|+.|++++|.+..+|+ ...+++|++|++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 198 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDL 198 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEEC
Confidence 78999999999999853 457899999999999999986554454 78999999999999977654 446999999999
Q ss_pred cccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 340 RSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 340 ~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
+++.+..+|+.++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus 199 --s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 199 --SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred --CCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 8999999998899999999999999999999998999999999999999865
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=6.8e-14 Score=120.43 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=121.7
Q ss_pred hHHHHhhhhhcchhhhhhhccccceeEEEeecc--CCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEcc
Q 037045 241 QDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGF--PSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLH 317 (424)
Q Consensus 241 ~~~Li~~w~~~~~~~~~~d~~~~~l~~L~l~~~--~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 317 (424)
....+..|.....+ ..-.++.+.+.+. .++.+| .+..+++|+.|++++|.++.++ .+..+++|++|+++
T Consensus 7 ~~~~~~~~~~~~~l------~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 7 IKDAIRIFEERKSV------VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLG 78 (198)
T ss_dssp HHHHHHHHHHTTCC------CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhcccc------cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECC
Confidence 34455555443332 2245566666554 334444 3577889999999999999987 37788999999999
Q ss_pred CCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccCCCC
Q 037045 318 ETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 318 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~~~~ 395 (424)
+|.+..+|..+..+++|++|++ +++.+..+| .++.+++|+.|++++|.++.+|. .+..+++|++|++++|.+.+.
T Consensus 79 ~n~l~~l~~~~~~~~~L~~L~L--~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 79 RNLIKKIENLDAVADTLEELWI--SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEECSCSSHHHHHHHCSEEEE--EEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCcccccchhhcCCcCCEEEC--cCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 9998888888888899999999 788888887 68888999999999999887765 588999999999999976433
Q ss_pred cccCCCCCCCCcChhhhhccccCceee
Q 037045 396 HTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.|... .........+..+++|++|+
T Consensus 156 ~~~~~--~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 156 YKENN--ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHTTT--THHHHHHHHHHHCSSCSEEC
T ss_pred ccccc--chHHHHHHHHHhCCCcEEEC
Confidence 22100 00001122377888888876
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=4.8e-11 Score=113.53 Aligned_cols=218 Identities=12% Similarity=0.043 Sum_probs=138.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC-----CC-CceEEEEEeccCC-CHHHHHHHHHHHhcccc---cccChhHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES-----RR-FDIIFWENINTDG-NIRDIQEIILERLKVNA---KELNNDLRADI 71 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-----~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~ 71 (424)
+.+.|+|++|+|||++|+.+++..... .. ...++|+++.... +...++..++..+.... ...+.......
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 468999999999999999999876321 11 3357888887777 88889999888884322 23334556677
Q ss_pred HHHHhccCcEEEEEcCCCCcch---hhh-h-ccCCCCCCcEEEEEecchhh----hc----ccCceEEecCCCHHHHHHH
Q 037045 72 ISKELNDRSYVLFLDGVSSEIN---FKE-I-GMHDDHGRGKVVFACRSREF----CW----QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 72 l~~~l~~~~~LlvlD~~~~~~~---~~~-~-~~~~~~~~~~iiittr~~~~----~~----~~~~~~~l~~l~~~~~~~l 138 (424)
+.+.+..++.+||||+++.... .+. + .+.....+..+|+||+.... .. .....+.+++++.++..++
T Consensus 126 l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~i 205 (384)
T 2qby_B 126 IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFI 205 (384)
T ss_dssp HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHH
T ss_pred HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHH
Confidence 7777777767999999987532 122 1 11111267788888887532 11 2234899999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcC---CchH-HHHHHHHHH--h---CCcchHHHHHHHHHhhhcCcccccchhhhh
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECG---GMPY-MLKLIGKEL--A---NQSEVAIWRATADELRLTSSEEKKELEEVD 209 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~---g~Pl-ai~~~a~~l--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 209 (424)
+...+..........++....+++.++ |.|. ++..+-... . ..-+.+.+...++....
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~------------- 272 (384)
T 2qby_B 206 LSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ------------- 272 (384)
T ss_dssp HHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------------
Confidence 998864311111222345667888887 8886 433333322 1 11234444444433321
Q ss_pred HHHhhhhccCCcchHhHHhhhhh
Q 037045 210 RFFTLVYKNLSLEQQHCLLGWAI 232 (424)
Q Consensus 210 ~~l~~s~~~L~~~~k~~~~~la~ 232 (424)
..+..++..|++..+..+..++.
T Consensus 273 ~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 273 ERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHT
T ss_pred chHHHHHHcCCHHHHHHHHHHHH
Confidence 23445567777777777776665
No 111
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=131.18 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=104.0
Q ss_pred cceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l 339 (424)
++|+.|++++|.+..++ .+..+++|+.|++++|.++..++ ..+..+++|++|++++|.+ ...|..+..+++|++|++
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 56666666666666533 24667777777777777776543 3366777888888888877 445566778888888888
Q ss_pred cccccccc--cCChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045 340 RSSCSLLL--QLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR 416 (424)
Q Consensus 340 ~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~ 416 (424)
.++.+. .+|..+..+++|+.|++++|.++.+ |..+.++++|++|++++|.+.+.. ...++.++
T Consensus 453 --~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~~~~~~l~ 518 (570)
T 2z63_A 453 --AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP------------DGIFDRLT 518 (570)
T ss_dssp --TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCT
T ss_pred --cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC------------HHHhhccc
Confidence 556554 5777778888888888888887755 556788888888888888765431 22567788
Q ss_pred cCceeecC
Q 037045 417 LLEELIIE 424 (424)
Q Consensus 417 ~L~~L~l~ 424 (424)
+|++|+++
T Consensus 519 ~L~~L~l~ 526 (570)
T 2z63_A 519 SLQKIWLH 526 (570)
T ss_dssp TCCEEECC
T ss_pred CCcEEEec
Confidence 88888764
No 112
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=3e-12 Score=124.77 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=108.0
Q ss_pred cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l 339 (424)
++++.|++++|.+... | .+..+++|+.|++++|.+++.++..+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 6788888888888873 3 347788899999999998887766678888899999999888655 456788899999999
Q ss_pred cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcc
Q 037045 340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
+++.+..+ |..+..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+..|
T Consensus 355 --s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 --SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp --CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred --CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77777765 66788888999999999888888765 6788889999999998877655
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.9e-12 Score=132.97 Aligned_cols=130 Identities=23% Similarity=0.176 Sum_probs=101.6
Q ss_pred eeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccc
Q 037045 265 TKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSC 343 (424)
Q Consensus 265 l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~ 343 (424)
+..++++.|.+..++ .+..+.+|+.|++++|.+..++... ..+++|++|++++|.+..+|..++.+++|++|++ ++
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L--s~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL--SH 279 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEEC--TT
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeC--cC
Confidence 333444444444333 3477889999999999999988874 4789999999999999999999999999999999 88
Q ss_pred cccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcc
Q 037045 344 SLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHT 397 (424)
Q Consensus 344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~ 397 (424)
|.+..+|..++.+++|+.|++++|.++.+|..|+++++|++|++++|.+.+..|
T Consensus 280 N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 280 NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 888899999999999999999999999999889999999999999998766533
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=6.3e-12 Score=124.89 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=7.7
Q ss_pred hhhccccCceeecC
Q 037045 411 IISKLRLLEELIIE 424 (424)
Q Consensus 411 ~l~~l~~L~~L~l~ 424 (424)
.+.++++|++|+|+
T Consensus 225 ~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 225 NILSLDPTCTIILE 238 (571)
T ss_dssp GGGGSCTTEEEECC
T ss_pred HHhcCCCCCEEEee
Confidence 35556666666553
No 115
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=3.3e-12 Score=119.12 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=70.8
Q ss_pred cceeEEEeeccCCCC---CCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhccccccee
Q 037045 263 AHTKRLSLFGFPSST---LPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNAL 337 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l 337 (424)
++|+.|++++|.++. .+. +..+ +|+.|++++|.++.+|... .++|+.|++++|.+..++ ..+..+++|++|
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 566777777766642 122 2333 5666666666666555431 245666666666654433 445566666666
Q ss_pred eecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 338 FLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 338 ~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
++ +++.+..++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+.
T Consensus 223 ~L--~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 223 GL--GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp BC--CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred EC--CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 66 5555554443 455566666666666666666655666666666666666543
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=118.67 Aligned_cols=131 Identities=15% Similarity=0.070 Sum_probs=79.0
Q ss_pred cceeEEEeeccCCCC-CC-CC--cCcccccEEEccCCCCCCCCh----HHhcccCCCcEEEccCCCCCcCC-hhhhcccc
Q 037045 263 AHTKRLSLFGFPSST-LP-DM--PNCCEILTLILEGKRLEKLPT----SFFDYMCHLQLLDLHETNIGCLP-PSISRLIN 333 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~-~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~ 333 (424)
++++.|++++|.+.. .| .+ ..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+...+ ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 557777777777765 23 22 566777777777777765322 22335667777777777774443 45667777
Q ss_pred cceeeeccccccccc---CCh--hhhccCCCCEEEecCCcCcccchh----hhcCCCCCEeeeccccCCCC
Q 037045 334 LNALFLRSSCSLLLQ---LPA--EIGRLQKLEILDVSHTKVQCLPSE----IGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 334 L~~l~l~~~~~~~~~---lp~--~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~l~l~~n~~~~~ 395 (424)
|++|++ +++.+.. ++. .++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.
T Consensus 171 L~~L~L--s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 171 LTSLDL--SDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCEEEC--CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCEEEC--CCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 777777 5554321 222 235666677777777766655442 35666677777777665544
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=105.94 Aligned_cols=121 Identities=20% Similarity=0.245 Sum_probs=103.9
Q ss_pred ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCCh-hhhccCCCCEEEec
Q 037045 287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVS 365 (424)
Q Consensus 287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~ 365 (424)
-+.+++++|.++.+|... .+.++.|++++|.+..+|..+..+++|++|++ +.+.+..++. .+..+++|+.|+++
T Consensus 12 ~~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~L--s~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDL--SNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEEC--CCCcCCEeCHhHccCCCCCCEEECC
Confidence 478999999999998752 46899999999999999999999999999999 8888988865 68999999999999
Q ss_pred CCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 366 HTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 366 ~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+|.++.+|.. +..+++|++|++++|.+.+.. ...+..+++|++|+++
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP------------EGAFNDLSALSHLAIG 134 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC------------TTTTTTCTTCCEEECC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeC------------hhhhhcCccccEEEeC
Confidence 9999988764 899999999999999875321 1246778889988874
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.33 E-value=1e-11 Score=120.89 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=63.8
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++|+.|++++|.++.++ +..+++|+.|++++|.+++++ +..+++|++|++++|.+..++ ++.+++|++|+++ .
T Consensus 85 ~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~-~ 157 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH-L 157 (457)
T ss_dssp TTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECT-T
T ss_pred CCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECC-C
Confidence 45555666665555543 455555666666666555543 345555666666655554442 4455555555552 2
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV 393 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~ 393 (424)
+..++.+ .++.+++|+.|++++|.++.+| +..+++|+.|++++|.+.
T Consensus 158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 158 NKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred CCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 2233333 2445555666666655555554 455555555555555543
No 119
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.32 E-value=7.9e-12 Score=126.33 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=104.8
Q ss_pred cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCCh-hhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPP-SISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~-~~~~l~~L~~l~l 339 (424)
++|+.|++++|.++.+|. +..+++|+.|++++|.+++.++..+..+++|+.|++++|.+ ..+|. .+..+++|++|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 677778888777777653 46777788888888777776655567777777777777766 35553 3677777777777
Q ss_pred cccccccccC---ChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCC-----------CCCC
Q 037045 340 RSSCSLLLQL---PAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHAD-----------AGSG 404 (424)
Q Consensus 340 ~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~-----------~~~~ 404 (424)
+.+.+... |..++.+++|+.|++++|.+..+ |..+..+++|++|++++|.+.+..+... .+..
T Consensus 358 --~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 358 --SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp --CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred --CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 66666544 45677777888888877776644 4457777778888887776654432210 0000
Q ss_pred --CCcChhhhhccccCceeecC
Q 037045 405 --EMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 405 --~~~~~~~l~~l~~L~~L~l~ 424 (424)
.......++.+++|++|+++
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECT
T ss_pred ccCCcCHHHHhCCCCCCEEECC
Confidence 11223446677777777764
No 120
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.31 E-value=4.8e-12 Score=132.78 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=120.4
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcC-Chhhhcccccceeeecccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCL-PPSISRLINLNALFLRSSC 343 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~-p~~~~~l~~L~~l~l~~~~ 343 (424)
+..+.+++.++.+|. -.++|+.|++++|.++.+++..+..+++|++|++++|.. ..+ |..+..+++|++|++ +.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L--s~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL--GS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC--TT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC--CC
Confidence 567888999999887 568899999999999987766689999999999999955 666 677999999999999 77
Q ss_pred cccccC-ChhhhccCCCCEEEecCCcCcc-cchh--hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045 344 SLLLQL-PAEIGRLQKLEILDVSHTKVQC-LPSE--IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE 419 (424)
Q Consensus 344 ~~~~~l-p~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 419 (424)
+.+..+ |..++.+++|+.|++++|.++. +|.. +.++++|++|++++|.+.+. .....+++|++|+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----------YLHPSFGKLNSLK 151 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----------CCCGGGGTCSSCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----------ccchhHhhCCCCC
Confidence 777765 7789999999999999999874 5665 89999999999999987543 1224577788888
Q ss_pred eeecC
Q 037045 420 ELIIE 424 (424)
Q Consensus 420 ~L~l~ 424 (424)
+|+|+
T Consensus 152 ~L~Ls 156 (844)
T 3j0a_A 152 SIDFS 156 (844)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 77763
No 121
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.31 E-value=1.4e-11 Score=123.41 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=111.4
Q ss_pred cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCCh--HHhcccCCCcEEEccCCCCCc-CChh-hhcccccce
Q 037045 263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQLLDLHETNIGC-LPPS-ISRLINLNA 336 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~-~p~~-~~~l~~L~~ 336 (424)
++++.|++++|.+.. .| .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+.. +|.. +..+++|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 688888888888887 33 45788889999999988887653 336778889999999888854 6653 777888888
Q ss_pred eeecccccccc-cCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcc
Q 037045 337 LFLRSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKL 415 (424)
Q Consensus 337 l~l~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l 415 (424)
|++ +++.+. ..|..+. ++|+.|++++|+++.+|..+..+++|++|++++|.+.+ +|. ..++.+
T Consensus 433 L~l--~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~-----------~~~~~l 496 (562)
T 3a79_B 433 LNL--SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPD-----------GVFDRL 496 (562)
T ss_dssp EEC--CSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCT-----------TSTTTC
T ss_pred EEC--CCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCH-----------HHHhcC
Confidence 888 666653 4444443 68999999999999999888899999999999997652 222 027788
Q ss_pred ccCceeecC
Q 037045 416 RLLEELIIE 424 (424)
Q Consensus 416 ~~L~~L~l~ 424 (424)
++|++|+++
T Consensus 497 ~~L~~L~l~ 505 (562)
T 3a79_B 497 TSLQYIWLH 505 (562)
T ss_dssp TTCCCEECC
T ss_pred CCCCEEEec
Confidence 888888874
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=1.6e-11 Score=119.44 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=81.3
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.++.+|.. +++|+.|++++|.+++++.. .++|++|++++|.+..+| .++.+++|++|++ +
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l--~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV--D 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC--C
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC--C
Confidence 4566666666666655432 35566666666666554431 145666666666665555 3666666666666 5
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc-------CCCCCCCCcChhhhhcc
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH-------ADAGSGEMISLNIISKL 415 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~-------~~~~~~~~~~~~~l~~l 415 (424)
++.+..+|... .+|+.|++++|.++.+| .++++++|++|++++|.+.+ +|. -+.+......++.++.+
T Consensus 162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~~~~l 236 (454)
T 1jl5_A 162 NNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPELQNL 236 (454)
T ss_dssp SSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCCCTTC
T ss_pred CCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccccCCC
Confidence 55555555432 35666666666655555 35666666666666665543 111 11111122234457778
Q ss_pred ccCceeecC
Q 037045 416 RLLEELIIE 424 (424)
Q Consensus 416 ~~L~~L~l~ 424 (424)
++|++|+++
T Consensus 237 ~~L~~L~l~ 245 (454)
T 1jl5_A 237 PFLTTIYAD 245 (454)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECC
Confidence 888888764
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=1.7e-10 Score=109.81 Aligned_cols=172 Identities=16% Similarity=0.107 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhc-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELN- 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~- 77 (424)
+.+.|+|++|+||||+++.+++... .. -..++|+++....+...+...++..++... ...+..+....+.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh
Confidence 4799999999999999999999884 33 235778888888888899999999887543 22344455555555554
Q ss_pred -cCcEEEEEcCCCCcc--hhhhh-ccCCC--C---CCcEEEEEecchhhhc---------ccCceEEecCCCHHHHHHHH
Q 037045 78 -DRSYVLFLDGVSSEI--NFKEI-GMHDD--H---GRGKVVFACRSREFCW---------QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 78 -~~~~LlvlD~~~~~~--~~~~~-~~~~~--~---~~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~ 139 (424)
+++.+||||+++... .+..+ ..... . .+..+|++|+...... .....+.+.+++.++..+++
T Consensus 123 ~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l 202 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL 202 (389)
T ss_dssp TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHH
Confidence 458899999998752 23333 11111 1 4667888877653221 12347999999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHHhc---------CCchHHHHHHH
Q 037045 140 WEVVGVHLKKYPDIELVADSIVKEC---------GGMPYMLKLIG 175 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~I~~~~---------~g~Plai~~~a 175 (424)
...+..........++....+++.+ .|.|..+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 203 LDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp HHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 8887531111223356778899998 78876554443
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=1.1e-11 Score=123.26 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=100.7
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
.+|+.|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.+..+|. ++ ++|++|++ +
T Consensus 120 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L--s 188 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV--S 188 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC--C
T ss_pred cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC--c
Confidence 378888888888888776 67888889999888888776 46789999999999877887 65 88999999 8
Q ss_pred ccccccCChhhhccCCC-------CEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc
Q 037045 343 CSLLLQLPAEIGRLQKL-------EILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L-------~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~ 398 (424)
+|.+..+|. +.. +| +.|++++|.++.+|..+.++++|++|++++|.+.+..|.
T Consensus 189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 888888887 554 67 999999999999999888899999999999988665443
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=1.7e-12 Score=121.22 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=95.3
Q ss_pred cceeEEEeeccCCCC-C-CCCcCcccccEEEccCC-CCCCC-ChHHhcccCCCcEEEccCC-CCCc--CChhhhccc-cc
Q 037045 263 AHTKRLSLFGFPSST-L-PDMPNCCEILTLILEGK-RLEKL-PTSFFDYMCHLQLLDLHET-NIGC--LPPSISRLI-NL 334 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~-~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~-~~~~--~p~~~~~l~-~L 334 (424)
++|++|++++|.+.. . ..+..+++|+.|++++| .+++. .+..+..+++|+.|++++| .+.. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 677777777776653 2 23355777777777777 55531 2233556777777777777 6633 455566777 77
Q ss_pred ceeeecccccc--c--ccCChhhhccCCCCEEEecCCc-Cc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045 335 NALFLRSSCSL--L--LQLPAEIGRLQKLEILDVSHTK-VQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMIS 408 (424)
Q Consensus 335 ~~l~l~~~~~~--~--~~lp~~~~~l~~L~~L~l~~~~-i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 408 (424)
++|++ +++. + ..+|..+..+++|+.|++++|. ++ ..+..+.++++|++|++++|... ....
T Consensus 198 ~~L~l--~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-----------~~~~ 264 (336)
T 2ast_B 198 TQLNL--SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-----------IPET 264 (336)
T ss_dssp CEEEC--CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-----------CGGG
T ss_pred CEEEe--CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC-----------CHHH
Confidence 77777 4442 2 3456666677777777777776 55 44556777777777777777411 2234
Q ss_pred hhhhhccccCceeecC
Q 037045 409 LNIISKLRLLEELIIE 424 (424)
Q Consensus 409 ~~~l~~l~~L~~L~l~ 424 (424)
+..++++++|++|+|+
T Consensus 265 ~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 265 LLELGEIPTLKTLQVF 280 (336)
T ss_dssp GGGGGGCTTCCEEECT
T ss_pred HHHHhcCCCCCEEecc
Confidence 4567888899988874
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.26 E-value=8.1e-11 Score=111.92 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=133.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC----CCCceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES----RRFDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~ 75 (424)
+.+.|+|++|+||||+|+.+++..... ..-...+|+++....+...+...++.+++... ...+..+....+.+.
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 358899999999999999999877321 11234788888888889999999999987644 233345555666666
Q ss_pred hc--cCcEEEEEcCCCCcchh----hhh----ccCCC---CCCcEEEEEecchhhh---c----c--cCceEEecCCCHH
Q 037045 76 LN--DRSYVLFLDGVSSEINF----KEI----GMHDD---HGRGKVVFACRSREFC---W----Q--ADGVIHVQQLCQR 133 (424)
Q Consensus 76 l~--~~~~LlvlD~~~~~~~~----~~~----~~~~~---~~~~~iiittr~~~~~---~----~--~~~~~~l~~l~~~ 133 (424)
+. +++++||||+++....- +.+ ..... ..+..+|.||+..... . . ....+.+++++.+
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~ 204 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAP 204 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHH
T ss_pred HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHH
Confidence 63 45889999999875421 222 11111 4456777777665321 1 2 2257899999999
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHhcC---CchHHHH-HHHHHH---h--C--CcchHHHHHHHHHhhhcCcccc
Q 037045 134 EAKKLFWEVVGVHLKKYPDIELVADSIVKECG---GMPYMLK-LIGKEL---A--N--QSEVAIWRATADELRLTSSEEK 202 (424)
Q Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~---g~Plai~-~~a~~l---~--~--~~~~~~~~~~~~~l~~~~~~~~ 202 (424)
+..+++...+..........++....+++.++ |.|..+. .+.... . . .-+.+.+....+....
T Consensus 205 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------ 278 (387)
T 2v1u_A 205 QLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER------ 278 (387)
T ss_dssp HHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh------
Confidence 99999998864310011122335667888887 9994333 222221 1 1 1233444444333322
Q ss_pred cchhhhhHHHhhhhccCCcchHhHHhhhh
Q 037045 203 KELEEVDRFFTLVYKNLSLEQQHCLLGWA 231 (424)
Q Consensus 203 ~~~~~i~~~l~~s~~~L~~~~k~~~~~la 231 (424)
..+..++..|+++.+..+..++
T Consensus 279 -------~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 279 -------DRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp -------HHHHHHHHSSCHHHHHHHHHHH
T ss_pred -------chHHHHHHcCCHHHHHHHHHHH
Confidence 2344566788888888777777
No 127
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=6.9e-11 Score=112.35 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=132.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhc-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELN- 77 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~- 77 (424)
+.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++..++... ...+..+....+.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 125 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD 125 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999998732111 234788888777778888888887776543 22234444555555554
Q ss_pred -cCcEEEEEcCCCCcc------hhhhh-ccCC--CCCCcEEEEEecchhhhc---------ccCceEEecCCCHHHHHHH
Q 037045 78 -DRSYVLFLDGVSSEI------NFKEI-GMHD--DHGRGKVVFACRSREFCW---------QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 78 -~~~~LlvlD~~~~~~------~~~~~-~~~~--~~~~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l 138 (424)
+++.+||||+++... .+..+ .... ...+..+|+||+...... .....+.+++++.++..++
T Consensus 126 ~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~i 205 (386)
T 2qby_A 126 YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDI 205 (386)
T ss_dssp CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHH
T ss_pred cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHH
Confidence 348999999987643 22222 1111 234556777777653221 1225899999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcC---CchHHHHHHHHHH-h----C---CcchHHHHHHHHHhhhcCcccccchhh
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECG---GMPYMLKLIGKEL-A----N---QSEVAIWRATADELRLTSSEEKKELEE 207 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~---g~Plai~~~a~~l-~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (424)
+.+.+..........++....+++.++ |.|..+..+.... . . .-+.+.+....+...
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------ 273 (386)
T 2qby_A 206 LTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE------------ 273 (386)
T ss_dssp HHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH------------
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh------------
Confidence 998764321122233556677888887 9997443333221 1 0 112233333322221
Q ss_pred hhHHHhhhhccCCcchHhHHhhhhh
Q 037045 208 VDRFFTLVYKNLSLEQQHCLLGWAI 232 (424)
Q Consensus 208 i~~~l~~s~~~L~~~~k~~~~~la~ 232 (424)
...+...+..+++..+..+..++.
T Consensus 274 -~~~~~~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 274 -RDRVRDIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp -HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -hchHHHHHHcCCHHHHHHHHHHHH
Confidence 123455566787777777777764
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=3.8e-12 Score=118.79 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=114.5
Q ss_pred cceeEEEeeccCCCC--CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCC--cCChhhhcccccce
Q 037045 263 AHTKRLSLFGFPSST--LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIG--CLPPSISRLINLNA 336 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~--~~p~~~~~l~~L~~ 336 (424)
++|+.|++++|.+.. ++ ....+++|+.|++++|.+++.....+..+++|++|++++| .+. .++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 788999999988764 33 3477889999999999888655445777899999999998 564 36666888899999
Q ss_pred eeeccccc-cccc--CChhhhccC-CCCEEEecCCc--C--cccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045 337 LFLRSSCS-LLLQ--LPAEIGRLQ-KLEILDVSHTK--V--QCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMIS 408 (424)
Q Consensus 337 l~l~~~~~-~~~~--lp~~~~~l~-~L~~L~l~~~~--i--~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 408 (424)
|++ .++ .+.. ++..+..++ +|+.|++++|. + ..+|..+.++++|++|++++|... ....
T Consensus 173 L~l--~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l-----------~~~~ 239 (336)
T 2ast_B 173 LNL--SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-----------KNDC 239 (336)
T ss_dssp EEC--CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC-----------CGGG
T ss_pred EcC--CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC-----------CHHH
Confidence 999 555 6653 577788888 99999999984 4 356777788899999999998622 1234
Q ss_pred hhhhhccccCceeecC
Q 037045 409 LNIISKLRLLEELIIE 424 (424)
Q Consensus 409 ~~~l~~l~~L~~L~l~ 424 (424)
+..++++++|++|+|+
T Consensus 240 ~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLS 255 (336)
T ss_dssp GGGGGGCTTCCEEECT
T ss_pred HHHHhCCCCCCEeeCC
Confidence 5577888999988874
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.22 E-value=9.7e-11 Score=117.72 Aligned_cols=131 Identities=23% Similarity=0.182 Sum_probs=64.5
Q ss_pred ceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccc
Q 037045 264 HTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSC 343 (424)
Q Consensus 264 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~ 343 (424)
+++.|++++|.++.+| ..+++|+.|++++|.++.++.. +++|+.|++++|.+..+|.. +++|++|++ ++
T Consensus 162 ~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~---~~~L~~L~L--s~ 230 (622)
T 3g06_A 162 ELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL---PSGLKELIV--SG 230 (622)
T ss_dssp TCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCC---CTTCCEEEC--CS
T ss_pred CCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCC---CCCCCEEEc--cC
Confidence 3333444444433333 2234455555555555544431 23444444444444333321 244555555 45
Q ss_pred cccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 344 SLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
|.+..+| ..+++|+.|++++|.++.+|. .+++|++|++++|.+. ..+..++++++|+.|+|
T Consensus 231 N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-------------~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 231 NRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-------------RLPESLIHLSSETTVNL 291 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-------------SCCGGGGGSCTTCEEEC
T ss_pred CccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-------------cCCHHHhhccccCEEEe
Confidence 5555555 233455555555555555554 4455555555555432 22345777778887776
Q ss_pred C
Q 037045 424 E 424 (424)
Q Consensus 424 ~ 424 (424)
+
T Consensus 292 ~ 292 (622)
T 3g06_A 292 E 292 (622)
T ss_dssp C
T ss_pred c
Confidence 4
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=1.2e-10 Score=98.02 Aligned_cols=122 Identities=25% Similarity=0.355 Sum_probs=102.0
Q ss_pred cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeecccccccccCChh-hhccCCCCEEE
Q 037045 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILD 363 (424)
Q Consensus 286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~ 363 (424)
..+.++++++.++.+|.. ..++|+.|++++|.+..+|+ .+..+++|++|++ .++.+..+|.. ++.+++|+.|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL--SQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEEC--CCCcceEeChhHccCCCccCEEE
Confidence 468899999999999865 24789999999999977765 4689999999999 88888888764 68999999999
Q ss_pred ecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+++|.++.+|.. +..+++|++|++++|.+.+. ....+..+++|++|+++
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------------~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSV------------PDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEe------------CHHHhcCCcccCEEEec
Confidence 999999988876 78999999999999986532 11235778889988874
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=7.7e-11 Score=114.56 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=95.2
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.++.+|.+..+++|+.|++++|.++++|.. ..+|++|++++|.+..+| .++.+++|++|++ .
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l--~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYA--D 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC--C
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEEC--C
Confidence 57888888888888888788888899999998888887653 357888888888887676 5888888888888 7
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~ 394 (424)
++.+..+|... ++|+.|++++|.++.+|. ++.+++|++|++++|.+.+
T Consensus 204 ~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 204 NNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred CCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc
Confidence 77777666533 478888888888777774 7788888888888887654
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7.6e-11 Score=98.92 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=68.4
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~ 344 (424)
+.++++++.+..+|... .++|+.|++++|.++++++..+..+++|++|++++|.+..+|+. +..+++|++|++ +++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L--~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL--NDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC--CCC
Confidence 45666677666655422 25677777777777766555566667777777777776666544 466677777777 666
Q ss_pred ccccCChh-hhccCCCCEEEecCCcCcccch
Q 037045 345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPS 374 (424)
Q Consensus 345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~ 374 (424)
.+..+|.. +..+++|+.|++++|++...|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 66666654 6666777777777776665544
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.19 E-value=1.2e-10 Score=117.11 Aligned_cols=113 Identities=27% Similarity=0.259 Sum_probs=72.0
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~ 342 (424)
++++.|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++ .
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L--~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI--F 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC--C
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC--C
Confidence 567777777777776665 46667777777777776665 35667777777777666655 4566677777 6
Q ss_pred ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~ 392 (424)
++.+..+|.. +++|+.|++++|.++.+|.. +++|+.|++++|.+
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l 173 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQL 173 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCC
Confidence 6666666653 36677777777776666542 23455555555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1.7e-12 Score=111.62 Aligned_cols=124 Identities=23% Similarity=0.273 Sum_probs=101.1
Q ss_pred ccccEEEccCCCCC-------CCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccC
Q 037045 285 CEILTLILEGKRLE-------KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQ 357 (424)
Q Consensus 285 ~~L~~L~l~~~~l~-------~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~ 357 (424)
..++.++++.+.+. .++.. +..+++|++|++++|.+..+| .+..+++|++|++ +++.+..+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l--~~n~l~~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSL--GRNLIKKIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEE--EEEEECSCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEEC--CCCCcccccchhhcCC
Confidence 34444444444444 34444 788999999999999998888 8999999999999 8889999998888889
Q ss_pred CCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 358 KLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 358 ~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+|+.|++++|.++.+| .+..+++|++|++++|.+.+ ...+..+..+++|++|+++
T Consensus 94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~-----------~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN-----------WGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC-----------HHHHHHHTTTTTCSEEEEC
T ss_pred cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc-----------hhHHHHHhcCCCCCEEEec
Confidence 9999999999999987 68999999999999997542 1223568999999999875
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.1e-10 Score=97.59 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=52.2
Q ss_pred eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS 344 (424)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~ 344 (424)
+.|+++++.++.+|... ..+|+.|++++|.++++++..+..+++|++|++++|.+..+|+. +..+++|++|++ +++
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L--~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL--NDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC--CCC
Confidence 34555555555544321 24455555555555555444445555555555555555444432 345555555555 455
Q ss_pred ccccCCh-hhhccCCCCEEEecCCcCc
Q 037045 345 LLLQLPA-EIGRLQKLEILDVSHTKVQ 370 (424)
Q Consensus 345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~ 370 (424)
.+..+|. .+..+++|+.|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555544 2445555555555555544
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1.5e-10 Score=97.09 Aligned_cols=105 Identities=21% Similarity=0.325 Sum_probs=93.1
Q ss_pred cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-ChhhhcccccceeeecccccccccCChh-hhccCCCCEEE
Q 037045 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILD 363 (424)
Q Consensus 286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~ 363 (424)
..+.+++++|.++.+|... .++|++|++++|.+..+ |..+..+++|++|++ +++.+..+|.. +..+++|+.|+
T Consensus 13 ~~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--s~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF--NSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp CSSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEEC--CCCCCCccChhHhCCcchhhEEE
Confidence 3578999999999999863 38899999999999776 567899999999999 88999999876 58999999999
Q ss_pred ecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045 364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~ 395 (424)
+++|.++.+|.. +..+++|++|++++|++...
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999999887 89999999999999987544
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=2e-10 Score=96.01 Aligned_cols=105 Identities=26% Similarity=0.306 Sum_probs=93.2
Q ss_pred cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-ChhhhcccccceeeecccccccccCChh-hhccCCCCEEE
Q 037045 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILD 363 (424)
Q Consensus 286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~ 363 (424)
..+.+++++|.++.+|... .+.|++|++++|.+..+ |..+..+++|++|++ +++.+..+|.. +..+++|+.|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~L--s~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL--DNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEEC--CCCCcCccChhhccCCCCCCEEE
Confidence 4689999999999999763 47899999999999776 567899999999999 88899998875 58999999999
Q ss_pred ecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045 364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~ 395 (424)
+++|.++.+|.. +..+++|++|++++|++.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999876 89999999999999987654
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.14 E-value=1.1e-11 Score=118.12 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred cceeEEEeeccCCCCCC--CC----cCc---------ccccEEEccCCCCCC--CCh--HHhcccCCCcEEEccCCCCC-
Q 037045 263 AHTKRLSLFGFPSSTLP--DM----PNC---------CEILTLILEGKRLEK--LPT--SFFDYMCHLQLLDLHETNIG- 322 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~----~~~---------~~L~~L~l~~~~l~~--~~~--~~~~~~~~L~~L~l~~~~~~- 322 (424)
++|++|++++|.+...+ .+ ..+ ++|+.|++++|.++. .+. ..+..+++|+.|++++|.+.
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence 56666666666664311 11 222 566666666666652 221 22445666777777776663
Q ss_pred -----cCChhhhcccccceeeeccccccc-----ccCChhhhccCCCCEEEecCCcCcc-----cchhhh--cCCCCCEe
Q 037045 323 -----CLPPSISRLINLNALFLRSSCSLL-----LQLPAEIGRLQKLEILDVSHTKVQC-----LPSEIG--QLIELKYL 385 (424)
Q Consensus 323 -----~~p~~~~~l~~L~~l~l~~~~~~~-----~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~--~l~~L~~l 385 (424)
-.|..+..+++|++|++ +++.+ ..+|..+..+++|+.|++++|.++. +|..+. .+++|++|
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~L--s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDL--QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEEC--CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred hHHHHHHHHHhhcCCCccEEEC--cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 12225566667777777 55555 4456666666677777777776653 344442 36667777
Q ss_pred eeccccCCCCcccCCCCCCCCcChhhh-hccccCceeecC
Q 037045 386 RVSRVENVGNHTHADAGSGEMISLNII-SKLRLLEELIIE 424 (424)
Q Consensus 386 ~l~~n~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~ 424 (424)
++++|.+.+. +.......+ .++++|++|+++
T Consensus 280 ~L~~n~i~~~--------g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 280 RLQYNEIELD--------AVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp ECCSSCCBHH--------HHHHHHHHHHHHCTTCCEEECT
T ss_pred ECcCCcCCHH--------HHHHHHHHHHhcCCCceEEEcc
Confidence 7777654320 000122344 557888888764
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=9e-10 Score=97.37 Aligned_cols=167 Identities=12% Similarity=0.064 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-----cccChhHHHHHHHHHh-
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-----KELNNDLRADIISKEL- 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l- 76 (424)
.+.|+|++|+||||+|+.+++.......+.. ..+... .. ...+........ ...........+.+.+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 119 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCS---HH-HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCccc---HH-HHHHhccCCcceEEecCcccccHHHHHHHHHHhh
Confidence 6899999999999999999988742221110 000000 00 001100000000 0000011111222221
Q ss_pred ----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 77 ----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 77 ----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
.+++.+||+||++... .++.+ .+.....+..+|+||+...... .....+++++++.++..+++...+.
T Consensus 120 ~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 120 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 2457999999998743 33333 1113345678888887654332 4457899999999999999998875
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
... ....++....|++.|+|+|..+..++..+
T Consensus 200 ~~~--~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 200 EEH--IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 431 12234567889999999999888776544
No 140
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.10 E-value=5.2e-11 Score=113.40 Aligned_cols=152 Identities=12% Similarity=0.085 Sum_probs=106.2
Q ss_pred cceeEEEeeccCCCC-----CC-CCcCcccccEEEccCCCCCCCChHHhc----cc---------CCCcEEEccCCCCC-
Q 037045 263 AHTKRLSLFGFPSST-----LP-DMPNCCEILTLILEGKRLEKLPTSFFD----YM---------CHLQLLDLHETNIG- 322 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~---------~~L~~L~l~~~~~~- 322 (424)
++|++|++++|.+.. ++ .+..+++|+.|++++|.++......+. .+ ++|++|++++|.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 788888888888776 22 236778888888888888643332222 23 78888888888874
Q ss_pred -cCC---hhhhcccccceeeecccccccc------cCChhhhccCCCCEEEecCCcC-----cccchhhhcCCCCCEeee
Q 037045 323 -CLP---PSISRLINLNALFLRSSCSLLL------QLPAEIGRLQKLEILDVSHTKV-----QCLPSEIGQLIELKYLRV 387 (424)
Q Consensus 323 -~~p---~~~~~l~~L~~l~l~~~~~~~~------~lp~~~~~l~~L~~L~l~~~~i-----~~lp~~i~~l~~L~~l~l 387 (424)
.+| ..+..+++|++|++ +++.+. -.|..+..+++|+.|++++|.+ ..+|..+..+++|++|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L--~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKM--VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEEC--CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCcCEEEC--cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 344 35667888888888 666665 2233677888899999988887 457777888888999999
Q ss_pred ccccCCCCcccCCCCCCCCcChhhh--hccccCceeecC
Q 037045 388 SRVENVGNHTHADAGSGEMISLNII--SKLRLLEELIIE 424 (424)
Q Consensus 388 ~~n~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~ 424 (424)
++|.+.+. +.......+ +++++|++|+|+
T Consensus 252 ~~n~i~~~--------~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 252 NDCLLSAR--------GAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp TTCCCCHH--------HHHHHHHHHHTCSSCCCCEEECC
T ss_pred CCCCCchh--------hHHHHHHHHhhccCCCeEEEECc
Confidence 88865321 000122344 348889999875
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=3.2e-09 Score=92.42 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+........ ...+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v 105 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP--------------IGGAPFKI 105 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC--------------STTCSCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC--------------CCccCceE
Confidence 4889999999999999999987632211122444554444343333222211111000 01246889
Q ss_pred EEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHH
Q 037045 83 LFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIE 154 (424)
Q Consensus 83 lvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 154 (424)
||+||++... ..+.+ .+.....++.+|+||+...... .....+++.+++.++..+++.+.+.... ....+
T Consensus 106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~ 183 (226)
T 2chg_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG--VKITE 183 (226)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCH
T ss_pred EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence 9999998753 22333 1112345678888887654322 4445899999999999999998775431 11234
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 037045 155 LVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 155 ~~~~~I~~~~~g~Plai~~~a 175 (424)
+....+++.++|.|..+..+.
T Consensus 184 ~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 184 DGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 567889999999998654443
No 142
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=2.2e-10 Score=108.07 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=90.8
Q ss_pred ceeEEEeeccCCCCCC--CCcCc-----ccccEEEccCCCCCCCChHHhcc----c-CCCcEEEccCCCCCcCCh-hhhc
Q 037045 264 HTKRLSLFGFPSSTLP--DMPNC-----CEILTLILEGKRLEKLPTSFFDY----M-CHLQLLDLHETNIGCLPP-SISR 330 (424)
Q Consensus 264 ~l~~L~l~~~~~~~~~--~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~----~-~~L~~L~l~~~~~~~~p~-~~~~ 330 (424)
+|+.|++++|.+.... .+..+ ++|+.|++++|.++..+...+.. + ++|+.|++++|.+...+. .+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 6777888887777632 22332 77788888888777655543332 3 678888888887754442 3322
Q ss_pred -----ccccceeeecccccccc-----cCChhhhccC-CCCEEEecCCcCcccch-----hhhcC-CCCCEeeeccccCC
Q 037045 331 -----LINLNALFLRSSCSLLL-----QLPAEIGRLQ-KLEILDVSHTKVQCLPS-----EIGQL-IELKYLRVSRVENV 393 (424)
Q Consensus 331 -----l~~L~~l~l~~~~~~~~-----~lp~~~~~l~-~L~~L~l~~~~i~~lp~-----~i~~l-~~L~~l~l~~n~~~ 393 (424)
..+|++|++ +++.++ .++..+..++ +|+.|++++|.++..+. .+..+ ++|++|++++|.+.
T Consensus 132 ~l~~~~~~L~~L~L--s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 132 AFSNLPASITSLNL--RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCceeEEEc--cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 257788888 666665 3344445555 78888888887764432 23344 47888888887653
Q ss_pred CCcccCCCCCCCCcChhhhhcc-ccCceeecC
Q 037045 394 GNHTHADAGSGEMISLNIISKL-RLLEELIIE 424 (424)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~ 424 (424)
.. +.......+..+ ++|++|+|+
T Consensus 210 ~~--------~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 210 LK--------SYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp GS--------CHHHHHHHHHHSCTTCCEEECC
T ss_pred hh--------HHHHHHHHHhcCCCCceEEECc
Confidence 21 011123344443 488888875
No 143
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=8.4e-10 Score=103.54 Aligned_cols=146 Identities=23% Similarity=0.233 Sum_probs=97.8
Q ss_pred cceeEEEeeccCCCCCCCC--cCcccccEEEccC-CCCCCCChHHhccc-CCCcEEEccCCCCCcCChhhhcccccceee
Q 037045 263 AHTKRLSLFGFPSSTLPDM--PNCCEILTLILEG-KRLEKLPTSFFDYM-CHLQLLDLHETNIGCLPPSISRLINLNALF 338 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~-~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~ 338 (424)
++|+.|++++|.+..++.. ....++..|++.+ +.++.++...+..+ ..++.|++++|.+..+|.......+|+.++
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred cccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 6777777777777776544 3344555666653 56666665544444 357778888888877776666667788888
Q ss_pred ecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045 339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417 (424)
Q Consensus 339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 417 (424)
+. .++.+..+|. .+..+++|+.|++++|+++.+|.. .+.+|+.|.+.++. ....++.+.+|++
T Consensus 184 l~-~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~-------------~l~~lP~l~~l~~ 247 (350)
T 4ay9_X 184 LS-DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY-------------NLKKLPTLEKLVA 247 (350)
T ss_dssp CT-TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT-------------TCCCCCCTTTCCS
T ss_pred hc-cCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC-------------CcCcCCCchhCcC
Confidence 73 5677777776 357778888888888888888763 34455555555543 3345566788888
Q ss_pred CceeecC
Q 037045 418 LEELIIE 424 (424)
Q Consensus 418 L~~L~l~ 424 (424)
|+.++++
T Consensus 248 L~~l~l~ 254 (350)
T 4ay9_X 248 LMEASLT 254 (350)
T ss_dssp CCEEECS
T ss_pred hhhCcCC
Confidence 8888763
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=2.3e-10 Score=107.87 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=59.7
Q ss_pred cceeEEEeeccCCCCCCC------CcCc-ccccEEEccCCCCCCCChHHhcc-----cCCCcEEEccCCCCCc-----CC
Q 037045 263 AHTKRLSLFGFPSSTLPD------MPNC-CEILTLILEGKRLEKLPTSFFDY-----MCHLQLLDLHETNIGC-----LP 325 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~------~~~~-~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~~~~~~-----~p 325 (424)
++|+.|++++|.+...+. +..+ ++|+.|++++|.++..+...+.. .++|++|++++|.+.. ++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 455566666655554221 1222 45566666665555544432222 1355555655555531 22
Q ss_pred hhhhccc-ccceeeecccccccccCC-h----hhhcc-CCCCEEEecCCcCcc-----cchhhhcC-CCCCEeeeccccC
Q 037045 326 PSISRLI-NLNALFLRSSCSLLLQLP-A----EIGRL-QKLEILDVSHTKVQC-----LPSEIGQL-IELKYLRVSRVEN 392 (424)
Q Consensus 326 ~~~~~l~-~L~~l~l~~~~~~~~~lp-~----~~~~l-~~L~~L~l~~~~i~~-----lp~~i~~l-~~L~~l~l~~n~~ 392 (424)
..+..++ +|++|++ +++.+...+ . .+..+ ++|+.|++++|.++. +|..+... ++|++|++++|.+
T Consensus 160 ~~l~~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNL--RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeee--cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 2223333 5555555 444444322 1 22223 355555555555554 44444332 3555555555544
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.00 E-value=8.5e-10 Score=103.48 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=89.2
Q ss_pred cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCC-CChHHhcccCCCcE-EEccCCCCCcCC-hhhhccccccee
Q 037045 263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEK-LPTSFFDYMCHLQL-LDLHETNIGCLP-PSISRLINLNAL 337 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~-L~l~~~~~~~~p-~~~~~l~~L~~l 337 (424)
++++.|++++|.++.+|. +..+++|+.|++++|.+.+ ++...+..++++.. +.+.+|++..+| ..+..+++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 567788888888877653 4677888888888877654 55555566666554 445556665553 446677777777
Q ss_pred eecccccccccCCh-hhhccCCCCEEEecCC-cCcccchh-hhcCC-CCCEeeeccccCCCCcccC----------CCCC
Q 037045 338 FLRSSCSLLLQLPA-EIGRLQKLEILDVSHT-KVQCLPSE-IGQLI-ELKYLRVSRVENVGNHTHA----------DAGS 403 (424)
Q Consensus 338 ~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~-~L~~l~l~~n~~~~~~~~~----------~~~~ 403 (424)
++ .++.+..+|. .+....++..+++..+ .+..+|.. +..+. .++.|++++|.+.+..+.. ....
T Consensus 110 ~l--~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EE--EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cc--cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 77 6666665543 2333444555555433 34444433 33332 4555555555543211110 0001
Q ss_pred CCCcChh--hhhccccCceeecC
Q 037045 404 GEMISLN--IISKLRLLEELIIE 424 (424)
Q Consensus 404 ~~~~~~~--~l~~l~~L~~L~l~ 424 (424)
.....++ .++.+++|++|+|+
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECT
T ss_pred CcccCCCHHHhccCcccchhhcC
Confidence 1122222 35778888888775
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.85 E-value=5e-10 Score=109.12 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=62.9
Q ss_pred ccccEEEccCCCCCCCC----hHHhcccCCCcEEEccCCCCCcC------Chhhhcccccceeeeccccccccc-----C
Q 037045 285 CEILTLILEGKRLEKLP----TSFFDYMCHLQLLDLHETNIGCL------PPSISRLINLNALFLRSSCSLLLQ-----L 349 (424)
Q Consensus 285 ~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~------p~~~~~l~~L~~l~l~~~~~~~~~-----l 349 (424)
++|+.|++++|.++... ...+..+++|+.|++++|.+... +..+..+++|++|++ +++.+.. +
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L--~~n~l~~~~~~~l 276 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI--WECGITAKGCGDL 276 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC--TTSCCCHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC--cCCCCCHHHHHHH
Confidence 35555555555555421 22234455555555555554221 111123455555555 4444443 4
Q ss_pred ChhhhccCCCCEEEecCCcCccc-chhhh-----cCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045 350 PAEIGRLQKLEILDVSHTKVQCL-PSEIG-----QLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423 (424)
Q Consensus 350 p~~~~~l~~L~~L~l~~~~i~~l-p~~i~-----~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 423 (424)
+..+..+++|+.|++++|.+... +..+. ..++|++|++++|.+.+. ........+..+++|++|+|
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA--------CCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--------GHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH--------HHHHHHHHHhhCCCccEEEc
Confidence 44455555566666665555421 11121 114566666666543221 00113445677899999987
Q ss_pred C
Q 037045 424 E 424 (424)
Q Consensus 424 ~ 424 (424)
+
T Consensus 349 s 349 (461)
T 1z7x_W 349 S 349 (461)
T ss_dssp C
T ss_pred c
Confidence 5
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1.3e-08 Score=95.14 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=64.1
Q ss_pred EEEeecc-CCCCCCCCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccc
Q 037045 267 RLSLFGF-PSSTLPDMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSC 343 (424)
Q Consensus 267 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~ 343 (424)
.++++++ .++.+|.+..+.+|+.|+|++ |.++.+++..+..+++|+.|++++|.+..+| ..|..+++|++|++ ++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l--~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL--SF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC--CS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC--CC
Confidence 3455665 666665566666677777764 7777666655666677777777777665443 34566677777777 66
Q ss_pred cccccCChhhhccCCCCEEEecCCcCc
Q 037045 344 SLLLQLPAEIGRLQKLEILDVSHTKVQ 370 (424)
Q Consensus 344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~ 370 (424)
|.+..+|..+.....|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 666666654443333667777666655
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=3.8e-08 Score=90.91 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=94.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L 82 (424)
+.|+|++|+|||++|+.+++..........+++++.+.......+ +++...+.... ..+ .+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~-------------~~~~~~~~~v 110 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKK-------------LHLPPGKHKI 110 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBC-------------CCCCTTCCEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhcc-------------ccCCCCCceE
Confidence 789999999999999999988631111122455554443333222 22222211000 011 345889
Q ss_pred EEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHH
Q 037045 83 LFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIE 154 (424)
Q Consensus 83 lvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 154 (424)
+|+|+++... ..+.+ .+.....++.+|++|+...... .....+++.+++.++..+++...+.... ....+
T Consensus 111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~ 188 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED--VKYTN 188 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCH
T ss_pred EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence 9999998753 22222 1112335677888776644322 5566899999999999999988765331 12224
Q ss_pred HHHHHHHHhcCCchHH-HHHHH
Q 037045 155 LVADSIVKECGGMPYM-LKLIG 175 (424)
Q Consensus 155 ~~~~~I~~~~~g~Pla-i~~~a 175 (424)
+.+..|++.++|.|.. +..+.
T Consensus 189 ~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 189 DGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5678899999999954 44443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.1e-08 Score=95.59 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=83.5
Q ss_pred cEEEccCC-CCCCCChHHhcccCCCcEEEccC-CCCCcCC-hhhhcccccceeeecccccccccCCh-hhhccCCCCEEE
Q 037045 288 LTLILEGK-RLEKLPTSFFDYMCHLQLLDLHE-TNIGCLP-PSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILD 363 (424)
Q Consensus 288 ~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~ 363 (424)
..++++++ .++.+|. +..+++|+.|++++ |.+..+| ..|+.+++|+.|++ ++|.+..+|+ .++.+++|+.|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l--~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--VKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC--CSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC--CCCccceeCHHHhcCCcCCCEEe
Confidence 45688887 8888887 77888899999996 8887776 56889999999999 7778877765 678899999999
Q ss_pred ecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045 364 VSHTKVQCLPSEIGQLIELKYLRVSRVENVG 394 (424)
Q Consensus 364 l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~ 394 (424)
+++|.++.+|..+.....|+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999999888764333349999999998754
No 150
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.78 E-value=1.4e-09 Score=105.90 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=77.3
Q ss_pred cceeEEEeeccCCCC-----CCC-CcCcccccEEEccCCCCCCCC-hHHhcccC----CCcEEEccCCCCC-----cCCh
Q 037045 263 AHTKRLSLFGFPSST-----LPD-MPNCCEILTLILEGKRLEKLP-TSFFDYMC----HLQLLDLHETNIG-----CLPP 326 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~----~L~~L~l~~~~~~-----~~p~ 326 (424)
++++.|++++|.+.. ++. +..+++|+.|++++|.+++.. ......++ +|++|++++|.+. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 667777777777663 122 255677777777777766432 22223344 5777777777764 3456
Q ss_pred hhhcccccceeeecccccccccC-Chhhh-----ccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045 327 SISRLINLNALFLRSSCSLLLQL-PAEIG-----RLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 327 ~~~~l~~L~~l~l~~~~~~~~~l-p~~~~-----~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~ 392 (424)
.+..+++|++|++ +++.+... +..+. ..++|+.|++++|.++. ++..+..+++|++|++++|.+
T Consensus 108 ~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 108 TLRTLPTLQELHL--SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HTTSCTTCCEEEC--CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHccCCceeEEEC--CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 6677777777777 55555422 22222 23467777777777653 344456667777777777754
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.1e-07 Score=84.79 Aligned_cols=144 Identities=8% Similarity=0.028 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCC---C--ceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRR---F--DIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISK 74 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~ 74 (424)
+.+.|+|++|+|||++|+.+++....... . -..+++++....+...++..|++++.... ...........+..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~ 125 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITN 125 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 35789999999999999999998853211 1 13677787788889999999999996543 11122222223322
Q ss_pred H--hccCcEEEEEcCCCCcchhhhh----ccC-CCCCCcEEEEEecchh-----hhc-----ccCceEEecCCCHHHHHH
Q 037045 75 E--LNDRSYVLFLDGVSSEINFKEI----GMH-DDHGRGKVVFACRSRE-----FCW-----QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 75 ~--l~~~~~LlvlD~~~~~~~~~~~----~~~-~~~~~~~iiittr~~~-----~~~-----~~~~~~~l~~l~~~~~~~ 137 (424)
. -.++.+++++|+++...+-+-+ .++ .......+|.++...+ +.+ .....+.+.+++.+|-.+
T Consensus 126 ~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~ 205 (318)
T 3te6_A 126 VPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQ 205 (318)
T ss_dssp SCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHH
T ss_pred hhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHH
Confidence 1 1346799999999886421211 111 1222233333343221 111 122579999999999999
Q ss_pred HHHHHhcc
Q 037045 138 LFWEVVGV 145 (424)
Q Consensus 138 l~~~~~~~ 145 (424)
++.+++..
T Consensus 206 Il~~Rl~~ 213 (318)
T 3te6_A 206 MIITRLKS 213 (318)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988854
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.70 E-value=1e-08 Score=103.15 Aligned_cols=128 Identities=13% Similarity=-0.026 Sum_probs=65.2
Q ss_pred cceeEEEeeccCCCCCCC------CcCcccccEEEccCCCCCCCCh----HHhcccCCCcEEEccCCCCCcCChhhhccc
Q 037045 263 AHTKRLSLFGFPSSTLPD------MPNCCEILTLILEGKRLEKLPT----SFFDYMCHLQLLDLHETNIGCLPPSISRLI 332 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~ 332 (424)
++|+.|++++|.+..... ...+++|+.|++++|.++++.. ..+..+++|+.|++++|.+..+|..+..++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 566666666665443211 1345666666666666653322 123345666666666666555555556666
Q ss_pred ccceeeeccccccc---ccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045 333 NLNALFLRSSCSLL---LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 333 ~L~~l~l~~~~~~~---~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~ 391 (424)
+|+.++++ ..+.. ...+..+..+++|+.++++++....+|..+..+++|++|++++|.
T Consensus 244 ~L~~L~l~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 244 NLEEFCGG-SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TCCEEEEC-BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HHHhhccc-ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 66666662 12111 112233444445555555444334455445555566666666554
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=1.4e-07 Score=87.19 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
-+.|+|++|+||||+|+.+++..... .+ ...+.++.+.......+...+ ..+... .....+++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~ 112 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKV-KEFART-------------KPIGGASFK 112 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHH-HHHHHS-------------CCGGGCSCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHHHHH-HHHHhh-------------CCcCCCCCe
Confidence 47899999999999999999986311 11 123333332211111111111 100000 001125688
Q ss_pred EEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045 82 VLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI 153 (424)
Q Consensus 82 LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 153 (424)
++|+|+++... ..+.+ .+.....++.+|+||....... .....+++.+++.++..+++...+... .....
T Consensus 113 vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~~ 190 (327)
T 1iqp_A 113 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE--GLELT 190 (327)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTT--TCEEC
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhc--CCCCC
Confidence 99999998753 23333 1112334678888876644322 344588999999999999998877543 12233
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 154 ELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 154 ~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
++....|++.++|.|..+..+...+
T Consensus 191 ~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 191 EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5677889999999998665544433
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=2.2e-09 Score=101.26 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=86.3
Q ss_pred cceeEEEeeccCCCC--CCCC-cCcccccEEEccCCCCCCCChHHh-----cccCCCcEEEccCCCCCc-----CChhhh
Q 037045 263 AHTKRLSLFGFPSST--LPDM-PNCCEILTLILEGKRLEKLPTSFF-----DYMCHLQLLDLHETNIGC-----LPPSIS 329 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~-----~p~~~~ 329 (424)
.+|+.|++++|.+.. +..+ ..+++|+.|++++|.++......+ ...++|+.|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 578888888887764 2222 446678888888888875433322 235678888888887732 334456
Q ss_pred cccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045 330 RLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 330 ~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~ 392 (424)
..++|++|++ ++|.++. ++..+...++|+.|++++|.++. ++..+...++|++|++++|.+
T Consensus 181 ~~~~L~~L~L--s~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSL--LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEEC--TTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeC--CCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 6778888888 6666653 34456667788888888888763 333455667888888888865
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=5.5e-09 Score=98.55 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred cceeEEEeeccCCCCCC--CC-----cCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCCCcC-Chhhh----
Q 037045 263 AHTKRLSLFGFPSSTLP--DM-----PNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNIGCL-PPSIS---- 329 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~-----~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~-p~~~~---- 329 (424)
++++.|++++|.++... .+ ..+++|+.|++++|.++.... .....+++|+.|++++|.++.. ...++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56777777777766421 11 233577777777777764222 2123355677777777776332 12221
Q ss_pred -cccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccCCCCccc
Q 037045 330 -RLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVENVGNHTH 398 (424)
Q Consensus 330 -~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~~~~~~~ 398 (424)
..++|++|++ ++|.++. ++..+..+++|++|++++|.++. ++..+...++|+.|++++|.+...
T Consensus 152 ~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~--- 226 (372)
T 3un9_A 152 HDQCQITTLRL--SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT--- 226 (372)
T ss_dssp STTCCCCEEEC--CSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH---
T ss_pred hcCCccceeeC--CCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH---
Confidence 2466777777 5666543 34445666777777777777653 234456667777777777764311
Q ss_pred CCCCCCCCcChhhhhccccCceeecC
Q 037045 399 ADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 399 ~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+.......+...++|++|+|+
T Consensus 227 -----g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 227 -----AALALARAAREHPSLELLHLY 247 (372)
T ss_dssp -----HHHHHHHHHHHCSSCCEEECT
T ss_pred -----HHHHHHHHHHhCCCCCEEecc
Confidence 001122334456677777664
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=8.3e-08 Score=89.01 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=22.7
Q ss_pred cccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC
Q 037045 284 CCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI 321 (424)
Q Consensus 284 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 321 (424)
|++|+.|.++. .++.++...|..+++|+.++++.|.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc
Confidence 66666666666 66666666666666666666666543
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=1.3e-07 Score=87.65 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=71.2
Q ss_pred cCCCcEEEccCCCCCcCCh-hhhcccccceeeecccccccccCCh-hhhccCCCC-EEEecCCcCcccchh-hhcCCCCC
Q 037045 308 MCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLE-ILDVSHTKVQCLPSE-IGQLIELK 383 (424)
Q Consensus 308 ~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~-~L~l~~~~i~~lp~~-i~~l~~L~ 383 (424)
+++|+.+++++|.+..+|. .|..+.+|+.+++ ..+ +..++. .+..|.+|+ .+.++. .++.++.. |..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l--~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL--PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC--CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEEC--Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 6678888888887877764 5788888888888 555 666654 577888888 888877 67767654 88888888
Q ss_pred EeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045 384 YLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI 422 (424)
Q Consensus 384 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 422 (424)
.+++++|.+..- .-..+.++++|+++.
T Consensus 301 ~l~l~~n~i~~I------------~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTL------------GDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEE------------CTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCcc------------chhhhcCCcchhhhc
Confidence 888877754321 223567777777764
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.54 E-value=4.3e-07 Score=87.48 Aligned_cols=157 Identities=12% Similarity=0.142 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+||||||+.+++.......-..+++++... +..++...+.... ...+.+.++.+..+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~~~v 197 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEGK--------LNEFREKYRKKVDI 197 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTTC--------HHHHHHHHTTTCSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHccc--------HHHHHHHhcCCCCE
Confidence 578999999999999999999873211112356655432 3344444333211 12233334436779
Q ss_pred EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchhhh-----c------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSREFC-----W------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~~~-----~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
|+||+++.... .+.+ .+. ....+..||+||...... . .....+.+++++.++..+++.+.+.
T Consensus 198 L~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp EEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 99999976542 2222 111 134567888888763221 1 2336788999999999999988775
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
.... ...++....|++.+.|.+..+..+.
T Consensus 278 ~~~~--~i~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 278 IEHG--ELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHTC--CCCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred HcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 3211 1113456788999999887655443
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.53 E-value=1.3e-06 Score=80.44 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=93.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH--h-cc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE--L-ND 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l-~~ 78 (424)
.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....... .......+... + .+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 101 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV-----------------VRHKIKEFARTAPIGGA 101 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----------------SSHHHHHHHHSCCSSSC
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----------------HHHHHHHHHhcCCCCCC
Confidence 378999999999999999999863 12221 234444433211110 11111111111 1 24
Q ss_pred CcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045 79 RSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY 150 (424)
Q Consensus 79 ~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 150 (424)
++.++|+|+++.... .+.+ . +.....++.+|++|....... .....+++.+++.++..+++...+.... .
T Consensus 102 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~--~ 179 (319)
T 2chq_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG--V 179 (319)
T ss_dssp CCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC--C
T ss_pred CceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 678999999987532 2333 1 112335667777776544222 5556899999999999999988875432 2
Q ss_pred ccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045 151 PDIELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 151 ~~~~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
...++....+++.++|.+..+.....
T Consensus 180 ~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 180 KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23355678899999999976554433
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.52 E-value=1.5e-06 Score=81.97 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcc-----cc-cccChhHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKV-----NA-KELNNDLRADIISKEL 76 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~-~~~~~~~~~~~l~~~l 76 (424)
.+.|+|+.|+||||+|+.+++.......+.. ..++.. .....+...-.. .. .....++ ...+.+.+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 111 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGRFVDLIEIDAASRTKVED-TRDLLDNV 111 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSCCSSCEEEETTCSCCSSC-HHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccCCCceEEecccccCCHHH-HHHHHHHH
Confidence 5789999999999999999988742211110 001110 001111100000 00 0011111 12222222
Q ss_pred -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHh
Q 037045 77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
.+++.++|+|+++... ..+.+ .+.....+..+|++|....... .....+++.+++.++..+++.+.+
T Consensus 112 ~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp TSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 2457899999998753 23333 1112234566777765443222 556789999999999999998876
Q ss_pred cccCCCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045 144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGK 176 (424)
Q Consensus 144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~ 176 (424)
.... ....++.+..|++.++|.|..+.....
T Consensus 192 ~~~~--~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 192 NEEH--IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHT--CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4431 122245678899999999987765543
No 161
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.50 E-value=5.6e-06 Score=76.26 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=88.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+-|.|+|++|+|||+||+.+++... .. ..+.++.+.-.+ .............+...-..++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--------------~~~g~~~~~~~~lf~~a~~~~~~ 107 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--------------KWLGESEKLVKNLFQLARENKPS 107 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC--------------SSCCSCHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh--------------hhhhHHHHHHHHHHHHHHhcCCc
Confidence 4588999999999999999999762 11 223344332110 00011111111112222235678
Q ss_pred EEEEcCCCCcc-------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHH
Q 037045 82 VLFLDGVSSEI-------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 82 LlvlD~~~~~~-------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l 138 (424)
+|+||+++... ....+ ++.....+..||.||....... .-...+.+...+.++..++
T Consensus 108 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 187 (322)
T 1xwi_A 108 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAM 187 (322)
T ss_dssp EEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred EEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHH
Confidence 99999998651 01111 1111223444555554432222 4446788888999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHH
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGK 176 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~ 176 (424)
+...+..... ...+.....|++.+.|+ +..|..++.
T Consensus 188 l~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 188 FKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9888754321 11245678899999987 555666554
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.49 E-value=3.5e-06 Score=75.71 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||++|+.+++.. ... .+.++.+... .+.. ...........+......+..+
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~--~~~---~~~i~~~~~~------------~g~~-~~~~~~~~~~~~~~~~~~~~~v 127 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEES--NFP---FIKICSPDKM------------IGFS-ETAKCQAMKKIFDDAYKSQLSC 127 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--TCS---EEEEECGGGC------------TTCC-HHHHHHHHHHHHHHHHTSSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEeCHHHh------------cCCc-hHHHHHHHHHHHHHHHhcCCcE
Confidence 57899999999999999999986 222 2233322210 0000 0000011112222223356789
Q ss_pred EEEcCCCCc----------c--hhhhh-c-cC---CCCCCcEEEEEecchhhhc------ccCceEEecCCCH-HHHHHH
Q 037045 83 LFLDGVSSE----------I--NFKEI-G-MH---DDHGRGKVVFACRSREFCW------QADGVIHVQQLCQ-REAKKL 138 (424)
Q Consensus 83 lvlD~~~~~----------~--~~~~~-~-~~---~~~~~~~iiittr~~~~~~------~~~~~~~l~~l~~-~~~~~l 138 (424)
|+||+++.. . .++.+ . +. .......||.||....... .....+.+.+++. ++..++
T Consensus 128 l~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i 207 (272)
T 1d2n_A 128 VVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEA 207 (272)
T ss_dssp EEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHH
T ss_pred EEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHH
Confidence 999998653 0 11222 1 11 1222334555666553211 3356788888888 666666
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcCCc------hHHHHHHHHHHhCCcchHHHHHHHHHhhh
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECGGM------PYMLKLIGKELANQSEVAIWRATADELRL 196 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~------Plai~~~a~~l~~~~~~~~~~~~~~~l~~ 196 (424)
+.+... . .++....+++.+.|. ..++..+-.. ........+.++++.+..
T Consensus 208 ~~~~~~----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 208 LELLGN----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHTC----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHHHHHHHHHH
T ss_pred HHhcCC----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHHHHHHHHHH
Confidence 555321 1 144577788888873 3333333322 223344566666665555
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.49 E-value=2.4e-07 Score=81.50 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=89.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|++|+||||+|+.+++.... ....+.|+++...... + .+.. +.+ .+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~~~~~------~-------------~~~~----~~~-~~~~ 106 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHASI------S-------------TALL----EGL-EQFD 106 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGGGS------C-------------GGGG----TTG-GGSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHH------H-------------HHHH----Hhc-cCCC
Confidence 46889999999999999999998742 2334677776442110 0 0000 011 3467
Q ss_pred EEEEcCCCCcch----hhhh-c-cC-CCCCCc-EEEEEecchhh----h-c------ccCceEEecCCCHHHHHHHHHHH
Q 037045 82 VLFLDGVSSEIN----FKEI-G-MH-DDHGRG-KVVFACRSREF----C-W------QADGVIHVQQLCQREAKKLFWEV 142 (424)
Q Consensus 82 LlvlD~~~~~~~----~~~~-~-~~-~~~~~~-~iiittr~~~~----~-~------~~~~~~~l~~l~~~~~~~l~~~~ 142 (424)
+||+|+++.... .+.+ . +. ....+. .+|+||+.... . . .....+++.+++.++..+++...
T Consensus 107 vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 107 LICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp EEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH
Confidence 899999876532 2222 1 00 011222 47777764331 1 1 12278999999999999999887
Q ss_pred hcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 143 VGVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 143 ~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
+.... ....++....+++.+.|.+..+..+.
T Consensus 187 ~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 187 AAMRG--LQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHTT--CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 75331 12235567889999999887665444
No 164
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.47 E-value=1.6e-07 Score=94.28 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=71.8
Q ss_pred cceeEEEeeccCCCCCC-----C-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC----CcCChhhhccc
Q 037045 263 AHTKRLSLFGFPSSTLP-----D-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI----GCLPPSISRLI 332 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~-----~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~----~~~p~~~~~l~ 332 (424)
++|+.|++++|.++... . ...|++|+.|++++|.+.+++.. +..+++|+.|+++.... ...+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 78889999888886322 1 25678899999998888776643 66778888888764321 12223344455
Q ss_pred ccceeeecccccccccCChhhhccCCCCEEEecCCcCc--ccchhhhcCCCCCEeeec
Q 037045 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVS 388 (424)
Q Consensus 333 ~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~ 388 (424)
+|+.+++ .......+|..+..+++|+.|++++|.++ .++..+..+++|++|+++
T Consensus 271 ~L~~L~l--~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 271 KLCRLGL--SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TCCEEEE--TTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccCc--cccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 5555555 33334444555555555555555555533 121223445555555554
No 165
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.46 E-value=1e-05 Score=72.12 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=84.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||++|+.+++... .. .+.+++....+. ............+.........+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~~~v 101 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVEV--------------IGGLGAARVRSLFKEARARAPCI 101 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSSS--------------STTHHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHhh--------------ccChhHHHHHHHHHHHHhcCCeE
Confidence 478999999999999999999872 22 344444332110 00000111112222222345789
Q ss_pred EEEcCCCCcc-----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045 83 LFLDGVSSEI-----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 83 lvlD~~~~~~-----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
|+||+++... .+..+ .+. ....+..+|.||....... .-...+.++..+.++
T Consensus 102 l~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred EEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 9999998651 11112 011 1223445666665433221 233677888999999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHHH
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIGK 176 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a~ 176 (424)
..+++...+.... ...........+++.+.|++- .|..+..
T Consensus 182 r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 182 RREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp HHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 9999988775432 222223345778888888753 5554443
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.39 E-value=5.1e-06 Score=76.59 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+|||++|+.+++... . ..+++++.......++...+ . .. ..+..+
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l~~~l----~----------------~~-~~~~~~ 93 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDLAAIL----A----------------NS-LEEGDI 93 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHHHHHH----T----------------TT-CCTTCE
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHHHHHH----H----------------Hh-ccCCCE
Confidence 578999999999999999999772 2 23455544433322222111 1 00 135678
Q ss_pred EEEcCCCCcch--hhhh-------ccC---C----------CCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEIN--FKEI-------GMH---D----------DHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~~--~~~~-------~~~---~----------~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~ 135 (424)
|+||+++.... .+.+ .+. . ...+..+|.+|....... .-...+.+.+++.++.
T Consensus 94 l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~ 173 (324)
T 1hqc_A 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 173 (324)
T ss_dssp EEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHH
T ss_pred EEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHH
Confidence 99999987631 1111 000 0 012345666665433222 2235889999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l 178 (424)
.+++.+.+.... ....++....+++.+.|+|..+..+...+
T Consensus 174 ~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 174 AQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999988875432 12335677889999999998887766554
No 167
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.39 E-value=7.6e-06 Score=75.44 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=87.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||++|+.+++.. ... .+.++.+. +. ... ...........+...-..+..+
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~--~~~---~~~v~~~~------l~----~~~----~g~~~~~~~~~f~~a~~~~~~v 113 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSSD------LV----SKW----MGESEKLVKQLFAMARENKPSI 113 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH--TCE---EEEEEHHH------HH----TTT----GGGHHHHHHHHHHHHHHTSSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHH--CCC---EEEEchHH------Hh----hcc----cchHHHHHHHHHHHHHhcCCeE
Confidence 48899999999999999999987 222 23333211 11 000 0001111111122222346789
Q ss_pred EEEcCCCCcch-------------hhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHH
Q 037045 83 LFLDGVSSEIN-------------FKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 83 lvlD~~~~~~~-------------~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~ 139 (424)
|+||+++.... ...+ ++.....+..||.||....... .-...+.+...+.++..+++
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 114 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp EEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred EEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence 99999985421 1222 1112333445555665533322 44567788889999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHH
Q 037045 140 WEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGK 176 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~ 176 (424)
...+.... ....+.....|++.+.|+ +-.|..++.
T Consensus 194 ~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 194 EINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 98886542 122244677899999884 556655553
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=4.7e-06 Score=75.34 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=83.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+|||++|+.+++... .. .+.+....-.. .............+.........+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~--~~---~~~v~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v 113 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETN--AT---FIRVVGSELVK--------------KFIGEGASLVKDIFKLAKEKAPSI 113 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTT--CE---EEEEEGGGGCC--------------CSTTHHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehHHHHH--------------hccchHHHHHHHHHHHHHHcCCeE
Confidence 578999999999999999998862 22 23333322110 000000011111222222345789
Q ss_pred EEEcCCCCcc----------------hhhhh--cc--CCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI----------------NFKEI--GM--HDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~----------------~~~~~--~~--~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
|+||+++... .+..+ .+ .....+..+|.||....... .....+.+...+.++.
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp EEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred EEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 9999997531 11111 00 12233556777776543333 2234788999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLIG 175 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~a 175 (424)
.+++........... +.....+++.+.| .|..|..+.
T Consensus 194 ~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 194 LEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp HHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHHHHH
Confidence 999998876542111 1124567777777 454555443
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.35 E-value=8.1e-06 Score=78.49 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 80 (424)
+.+.|+|++|+||||+|+.+++.. ...| +.++.. ....++. .++.... .....+++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~--~~~f-----~~l~a~~~~~~~ir-~~~~~a~---------------~~~~~~~~ 107 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA--NADV-----ERISAVTSGVKEIR-EAIERAR---------------QNRNAGRR 107 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT--TCEE-----EEEETTTCCHHHHH-HHHHHHH---------------HHHHTTCC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh--CCCe-----EEEEeccCCHHHHH-HHHHHHH---------------HhhhcCCC
Confidence 358899999999999999999987 2322 222221 2222222 2211100 01113578
Q ss_pred EEEEEcCCCCcc--hhhhhccC-CCCCCcEEEE-Eecchhh--hc---ccCceEEecCCCHHHHHHHHHHHhcccC----
Q 037045 81 YVLFLDGVSSEI--NFKEIGMH-DDHGRGKVVF-ACRSREF--CW---QADGVIHVQQLCQREAKKLFWEVVGVHL---- 147 (424)
Q Consensus 81 ~LlvlD~~~~~~--~~~~~~~~-~~~~~~~iii-ttr~~~~--~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~---- 147 (424)
.+|+||+++... ..+.+ ++ -......+|. ||.+... .. ....++.+++++.++..+++.+.+....
T Consensus 108 ~iLfIDEI~~l~~~~q~~L-L~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 108 TILFVDEVHRFNKSQQDAF-LPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp EEEEEETTTCC------CC-HHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred cEEEEeChhhhCHHHHHHH-HHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 899999998763 22222 11 1112334444 4444321 11 5566889999999999999998876421
Q ss_pred -CCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 148 -KKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 148 -~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
......++....|++.+.|.+..+.-+.
T Consensus 187 ~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred cccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1222345677889999999886655443
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.35 E-value=1.8e-05 Score=73.86 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=86.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.|+|++|+|||+||+.+++.. ... .+.++.+ ++.. . ............+...-..+..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~--~~~---~~~v~~~------~l~~----~----~~g~~~~~~~~~f~~a~~~~~~v 146 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------DLVS----K----WMGESEKLVKQLFAMARENKPSI 146 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH--TCE---EEEEEHH------HHHS----C----C---CHHHHHHHHHHHHHTSSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh--CCC---EEEeeHH------HHhh----h----hcchHHHHHHHHHHHHHHcCCeE
Confidence 37899999999999999999987 222 2333322 1110 0 00111111111222222346899
Q ss_pred EEEcCCCCcch-------------hhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHH
Q 037045 83 LFLDGVSSEIN-------------FKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLF 139 (424)
Q Consensus 83 lvlD~~~~~~~-------------~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~ 139 (424)
|+||+++.... ...+ ++.....+..||.||....... .-...+.+...+.++..+++
T Consensus 147 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 226 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 226 (355)
T ss_dssp EEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred EEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHH
Confidence 99999986421 1222 1111233445555665443222 44567888999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHHHH
Q 037045 140 WEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLIGK 176 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~a~ 176 (424)
...+..... ...+.....|++.+.| .+..|..++.
T Consensus 227 ~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 227 EINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 888765421 1124456789999988 4555665553
No 171
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.35 E-value=1.6e-07 Score=94.37 Aligned_cols=126 Identities=20% Similarity=0.166 Sum_probs=64.0
Q ss_pred cceeEEEeeccCCCCC-----CCC-cCcccccEEEccCCCCCCCChHH----hcccCCCcEEEccCCC-CCcCChhhhcc
Q 037045 263 AHTKRLSLFGFPSSTL-----PDM-PNCCEILTLILEGKRLEKLPTSF----FDYMCHLQLLDLHETN-IGCLPPSISRL 331 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~-----~~~-~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~-~~~~p~~~~~l 331 (424)
++|+.|++++|.+... +.. ..+++|+.|++++|. ..+.... ...+++|++|++++|. +..+|..+..+
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 5666666666654431 111 355667777776665 2222211 2334667777777662 23355555566
Q ss_pred cccceeeeccccc------------------------------ccccCChhhhccCCCCEEEecCCcCcc--cchhhhcC
Q 037045 332 INLNALFLRSSCS------------------------------LLLQLPAEIGRLQKLEILDVSHTKVQC--LPSEIGQL 379 (424)
Q Consensus 332 ~~L~~l~l~~~~~------------------------------~~~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l 379 (424)
++|+.+++. .+. ....+|..+..+++|+.|++++|.++. ++..+.++
T Consensus 235 ~~L~~L~l~-~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 235 PQLEELGTG-GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp TTCSEEECS-BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CcceEcccc-cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 666666541 110 011223333345666666666666441 22224466
Q ss_pred CCCCEeeeccc
Q 037045 380 IELKYLRVSRV 390 (424)
Q Consensus 380 ~~L~~l~l~~n 390 (424)
++|++|++++|
T Consensus 314 ~~L~~L~l~~~ 324 (594)
T 2p1m_B 314 PKLQRLWVLDY 324 (594)
T ss_dssp TTCCEEEEEGG
T ss_pred CCcCEEeCcCc
Confidence 66666666665
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.35 E-value=5.5e-06 Score=76.47 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.|+|++|+||||||+.+++..... -..++++++. ++...+...+... . ...+.+.+ .+..+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~----~----~~~~~~~~-~~~~v 101 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG----T----INEFRNMY-KSVDL 101 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT----C----HHHHHHHH-HTCSE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC----c----HHHHHHHh-cCCCE
Confidence 58899999999999999999987422 2235565543 2333333333211 0 11122222 23679
Q ss_pred EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchhh-----hc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045 83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSREF-----CW------QADGVIHVQQLCQREAKKLFWEVVG 144 (424)
Q Consensus 83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~~-----~~------~~~~~~~l~~l~~~~~~~l~~~~~~ 144 (424)
|+||+++.... .+.+ .+. ....+..+|+|+..... .. .....+++++ +.++..+++...+.
T Consensus 102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 99999987542 1222 111 12345678888764322 11 2336789999 99999999988875
Q ss_pred ccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045 145 VHLKKYPDIELVADSIVKECGGMPYMLK 172 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~ 172 (424)
... ....++....|++.+ |....+.
T Consensus 181 ~~~--~~l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 181 EFN--LELRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HTT--CCCCHHHHHHHHHHC-SSHHHHH
T ss_pred hcC--CCCCHHHHHHHHHhC-CCHHHHH
Confidence 431 122355678888888 8775443
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=4.8e-06 Score=77.75 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
-+.|+|++|+||||+|+.+++.......+ ..+..++.+.......+.. ....+........... .....-.+..-
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 135 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KVKNFARLTVSKPSKH---DLENYPCPPYK 135 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HHHHHHHSCCCCCCTT---HHHHSCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HHHHHhhhcccccchh---hcccCCCCCce
Confidence 37899999999999999999885311011 1234444443333332222 2221111100000000 00111123557
Q ss_pred EEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhh-c---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045 82 VLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFC-W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI 153 (424)
Q Consensus 82 LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~-~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 153 (424)
++++|+++.... .+.+ .+......+++|++|...... . .....+.+.+++.++..+.+...+.... ....
T Consensus 136 vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~ 213 (353)
T 1sxj_D 136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN--VKCD 213 (353)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT--CCCC
T ss_pred EEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC--CCCC
Confidence 999999887532 2222 111223456677766544322 2 4455889999999999999988775431 1223
Q ss_pred HHHHHHHHHhcCCchHHHHH
Q 037045 154 ELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 154 ~~~~~~I~~~~~g~Plai~~ 173 (424)
++....|++.++|.|..+..
T Consensus 214 ~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 214 DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 56788899999999976443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=1.9e-06 Score=84.81 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH--hccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE--LNDR 79 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~~ 79 (424)
+.+.|+|++|+||||+|+.+++... + .++.++++...+... ....+...... ...........+. ..++
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~~-~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~ 148 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTL-LNAGVKNALDN---MSVVGYFKHNEEAQNLNGK 148 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHH-HHHTGGGGTTB---CCSTTTTTC----CCSSTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHHH-HHHHHHHHhcc---ccHHHHHhhhhhhhhccCC
Confidence 4789999999999999999999871 2 244555555444332 22221111111 0010000000001 1246
Q ss_pred cEEEEEcCCCCcch-----hhhh-ccCCCCCCcEEEEEecchh---hhc--ccCceEEecCCCHHHHHHHHHHHhcccCC
Q 037045 80 SYVLFLDGVSSEIN-----FKEI-GMHDDHGRGKVVFACRSRE---FCW--QADGVIHVQQLCQREAKKLFWEVVGVHLK 148 (424)
Q Consensus 80 ~~LlvlD~~~~~~~-----~~~~-~~~~~~~~~~iiittr~~~---~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 148 (424)
+.+|+||+++.... +..+ .+. ...+..+|+++.... ... .....+.+.+++.++..+++...+.....
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l-~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~ 227 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFC-RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF 227 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHH-HHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHH-HhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 78999999987532 1222 111 112344555554322 112 44567899999999999999887654311
Q ss_pred CCccHHHHHHHHHHhcCCch-HHHHHHH
Q 037045 149 KYPDIELVADSIVKECGGMP-YMLKLIG 175 (424)
Q Consensus 149 ~~~~~~~~~~~I~~~~~g~P-lai~~~a 175 (424)
. ..++....|++.++|.+ .++..+.
T Consensus 228 ~--i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 228 K--LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp C--CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 11335778999999955 4454443
No 175
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.29 E-value=1.1e-07 Score=95.69 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=57.3
Q ss_pred cceeEEEeeccCCCC--CCCCc-CcccccEEEccCC-CCCCC-ChHHhcccCCCcEEEccCCCCCc-CChh----hhccc
Q 037045 263 AHTKRLSLFGFPSST--LPDMP-NCCEILTLILEGK-RLEKL-PTSFFDYMCHLQLLDLHETNIGC-LPPS----ISRLI 332 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~~~~~-~p~~----~~~l~ 332 (424)
++|+.|+++++.+.. +..+. .|++|+.|++++| .++.. .......+++|++|++++|.+.. .+.. ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 566666666665543 11222 4566666666665 33321 22223345666666666665421 1111 22444
Q ss_pred ccceeeecccccc--cc--cCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeee
Q 037045 333 NLNALFLRSSCSL--LL--QLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRV 387 (424)
Q Consensus 333 ~L~~l~l~~~~~~--~~--~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l 387 (424)
+|++|++ .++. +. .++.-...+++|+.|++++|. +..+|..+.++++|+.|.+
T Consensus 185 ~L~~L~l--~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 185 SLVSLNI--SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCEEEC--TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred cCcEEEe--cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 6666666 3332 11 111222334566666665552 3344444444444555443
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.29 E-value=8.9e-06 Score=76.45 Aligned_cols=169 Identities=12% Similarity=0.045 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec----cCCCHHHHHHHHHHHhccc------------------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN----TDGNIRDIQEIILERLKVN------------------ 59 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~~~~i~~~l~~~------------------ 59 (424)
+.+.|+|++|+|||++|+.+++.......| +.+... ..........+.+......
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 147 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVI 147 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhh
Confidence 368999999999999999999998421122 222221 1233334444333331110
Q ss_pred -------------ccccChhHHHHHHHHHh-----ccC----cEEEEEcCCCCcc--hhhhh-ccCCCCCCcEEEEEecc
Q 037045 60 -------------AKELNNDLRADIISKEL-----NDR----SYVLFLDGVSSEI--NFKEI-GMHDDHGRGKVVFACRS 114 (424)
Q Consensus 60 -------------~~~~~~~~~~~~l~~~l-----~~~----~~LlvlD~~~~~~--~~~~~-~~~~~~~~~~iiittr~ 114 (424)
............+.+.. .++ +.+|+||+++... ..+.+ ..........++++|..
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~ 227 (368)
T 3uk6_A 148 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNR 227 (368)
T ss_dssp TC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESC
T ss_pred hcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeeccc
Confidence 00000122222222211 122 3599999998763 22222 11112222234444431
Q ss_pred -------------hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcC-CchHHHHHHH
Q 037045 115 -------------REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECG-GMPYMLKLIG 175 (424)
Q Consensus 115 -------------~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~-g~Plai~~~a 175 (424)
..+.. .....+.+.+++.++..+++.+.+.... ....++....|++.+. |.|..+..+.
T Consensus 228 ~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 228 GITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp SEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11111 4445589999999999999998876531 2233567788899887 7776554433
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.28 E-value=1.8e-05 Score=73.26 Aligned_cols=147 Identities=11% Similarity=0.051 Sum_probs=87.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC--------------------CCceEEEEEec---cCCCHHHHHHHHHHHhccc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR--------------------RFDIIFWENIN---TDGNIRDIQEIILERLKVN 59 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~~~ 59 (424)
.+.++|+.|+|||++|+.+++...-.. +++ ..++... .....+.+ +++...+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~i-r~l~~~~~~~ 103 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAV-REVTEKLNEH 103 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHH-HHHHHHTTSC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHH-HHHHHHHhhc
Confidence 578999999999999999998864211 122 2222221 11111111 1122211110
Q ss_pred ccccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCC
Q 037045 60 AKELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLC 131 (424)
Q Consensus 60 ~~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~ 131 (424)
. ..+++-++|+|+++.... .+.+ .+-....++.+|++|.... +.+ +....+++.+++
T Consensus 104 ~---------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~ 168 (334)
T 1a5t_A 104 A---------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPP 168 (334)
T ss_dssp C---------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred c---------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC
Confidence 0 124578999999987642 2222 1112234566666665543 333 677789999999
Q ss_pred HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045 132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~ 173 (424)
+++..+.+.+... ..++.+..+++.++|.|..+..
T Consensus 169 ~~~~~~~L~~~~~-------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 169 EQYAVTWLSREVT-------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHHHHHCC-------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999987751 1134567899999999966543
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.5e-05 Score=74.51 Aligned_cols=137 Identities=13% Similarity=0.189 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----ccC
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----NDR 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~ 79 (424)
|.++|++|+|||.||+.++... ...| +.++.+.-.+ .-.++....+++.+ ...
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l~s------------------k~vGese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT--DCKF---IRVSGAELVQ------------------KYIGEGSRMVRELFVMAREHA 241 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH--TCEE---EEEEGGGGSC------------------SSTTHHHHHHHHHHHHHHHTC
T ss_pred eEEeCCCCCCHHHHHHHHHHhh--CCCc---eEEEhHHhhc------------------cccchHHHHHHHHHHHHHHhC
Confidence 6799999999999999999988 3333 3344332111 01111122222222 346
Q ss_pred cEEEEEcCCCCcc----------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045 80 SYVLFLDGVSSEI----------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC 131 (424)
Q Consensus 80 ~~LlvlD~~~~~~----------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~ 131 (424)
+++|+||+++... .+..+ ++ ....+..||.||....... .-+..++++.-+
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd 320 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF-ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT-TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCC
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc-CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcC
Confidence 8999999998531 01111 11 2233345555665433322 567788999889
Q ss_pred HHHHHHHHHHHhcccC-CCCccHHHHHHHHHHhcCCch
Q 037045 132 QREAKKLFWEVVGVHL-KKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++..++|+.+..+.. ....+ ...|++.+.|+-
T Consensus 321 ~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 321 VAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 9999999988775542 11222 456888888754
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.28 E-value=1.9e-05 Score=73.84 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+-|.|+|++|+|||++|+.+++.. .. ..+.++++.-.+. ............+...-..++.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~~--------------~~g~~~~~~~~~~~~a~~~~~~ 178 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTSK--------------WVGEGEKMVRALFAVARCQQPA 178 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCCS--------------STTHHHHHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhcc--------------ccchHHHHHHHHHHHHHhcCCe
Confidence 358899999999999999999876 22 2344554332110 0000000111111112234678
Q ss_pred EEEEcCCCCcc-------------hhhhh-----ccC-CCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHH
Q 037045 82 VLFLDGVSSEI-------------NFKEI-----GMH-DDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 82 LlvlD~~~~~~-------------~~~~~-----~~~-~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~ 137 (424)
+|+||+++... ....+ +.. ....+..||.||....... .-...+.+...+.++..+
T Consensus 179 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~ 258 (357)
T 3d8b_A 179 VIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258 (357)
T ss_dssp EEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHH
Confidence 99999986431 11122 111 1123345555665432222 334577888899999999
Q ss_pred HHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHHHH
Q 037045 138 LFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLIGK 176 (424)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~a~ 176 (424)
++...+.... ....++....|++.+.| .+..|..++.
T Consensus 259 il~~~~~~~~--~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 259 IVINLMSKEQ--CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHhhcC--CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9988775431 11224567889999988 5556666554
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.27 E-value=2e-05 Score=71.70 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=84.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHH-HHHHhccCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADI-ISKELNDRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-l~~~l~~~~ 80 (424)
+-+.|+|++|+|||++|+.+++... .. .+.++++.... .... ........ +.......+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~--~~---~~~i~~~~l~~--------------~~~~-~~~~~~~~~~~~~~~~~~ 114 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECS--AT---FLNISAASLTS--------------KYVG-DGEKLVRALFAVARHMQP 114 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT--CE---EEEEESTTTSS--------------SSCS-CHHHHHHHHHHHHHHTCS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEeeHHHHhh--------------cccc-hHHHHHHHHHHHHHHcCC
Confidence 3588999999999999999999772 21 23444332110 0000 01111111 112223467
Q ss_pred EEEEEcCCCCcch-----------------hhhh-ccCC--CCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045 81 YVLFLDGVSSEIN-----------------FKEI-GMHD--DHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA 135 (424)
Q Consensus 81 ~LlvlD~~~~~~~-----------------~~~~-~~~~--~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~ 135 (424)
.+|+||+++.... +..+ ..+. ...+..||.||....... .-...+.+...+.++.
T Consensus 115 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 115 SIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTR 194 (297)
T ss_dssp EEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHH
T ss_pred cEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHH
Confidence 8999999976411 1111 1221 123445666666533222 3346777888888888
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIG 175 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a 175 (424)
.+++...+.... ....++....+++.+.|++- +|..++
T Consensus 195 ~~il~~~~~~~~--~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 195 ELLLNRLLQKQG--SPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHGGGS--CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888887775432 11224567789999999875 555544
No 181
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.27 E-value=3.1e-05 Score=74.58 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=85.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+-|.|+|++|+|||+||+.+++... . .-++.++... +... ..+. .. ......+...-...+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~--~----~~~~~v~~~~----l~~~---~~g~--~~---~~~~~~f~~a~~~~~~ 229 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN--N----STFFSISSSD----LVSK---WLGE--SE---KLVKNLFQLARENKPS 229 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC--S----SEEEEECCC------------------CC---CTHHHHHHHHHHSCSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC--C----CCEEEEeHHH----HHhh---hcch--HH---HHHHHHHHHHHHcCCe
Confidence 4588999999999999999999761 1 1223332221 1100 0110 11 1111122222235678
Q ss_pred EEEEcCCCCcc-------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHH
Q 037045 82 VLFLDGVSSEI-------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 82 LlvlD~~~~~~-------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l 138 (424)
+|+||+++... ....+ ++.....+..||.||....... .-...+.+...+.++..++
T Consensus 230 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 309 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAM 309 (444)
T ss_dssp EEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHH
Confidence 99999998651 11222 0111233445665665443222 3445778888888888899
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHH
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGK 176 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~ 176 (424)
+...+.... ....+.....|++.+.|+ +..|..++.
T Consensus 310 l~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 310 FRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 988875431 111245667899999984 556655553
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=4.5e-06 Score=78.02 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=61.9
Q ss_pred cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045 78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKK 149 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 149 (424)
++.-++|+|+++.... .+.+ .+.....++.+|++|....... .....+++.+++.++..+.+.+.+....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-- 210 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-- 210 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC--
Confidence 3567999999988532 1222 1111233577777776543222 5668899999999999999988775431
Q ss_pred CccH-HHHHHHHHHhcCCchHHHHHHH
Q 037045 150 YPDI-ELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 150 ~~~~-~~~~~~I~~~~~g~Plai~~~a 175 (424)
.... ++.+..|++.++|.+..+..+.
T Consensus 211 ~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp CEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 1122 3467889999999987655444
No 183
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.20 E-value=2.5e-05 Score=71.16 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=81.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.|.|+|++|+|||++|+.+++... .. .+.++. .++.... .+. ........+.........
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~---~i~v~~------~~l~~~~---~g~-----~~~~~~~~f~~a~~~~p~ 110 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ--AN---FISIKG------PELLTMW---FGE-----SEANVREIFDKARQAAPC 110 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CE---EEEECH------HHHHHHH---HTT-----CTTHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC--CC---EEEEEh------HHHHhhh---cCc-----hHHHHHHHHHHHHhcCCe
Confidence 3588999999999999999999772 21 223321 2222211 111 112222233333345679
Q ss_pred EEEEcCCCCcch----------------hhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEIN----------------FKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~~----------------~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
+++||+++.... ...+ .-.....+..||.||....... .....+.+...+.++
T Consensus 111 il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 111 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp EEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH
Confidence 999999985311 1222 0011223456666665442221 234678899999999
Q ss_pred HHHHHHHHhcccCCC-CccHHHHHHHHHHhcCCchH
Q 037045 135 AKKLFWEVVGVHLKK-YPDIELVADSIVKECGGMPY 169 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~~g~Pl 169 (424)
..+++.......... ... ...+++.+.|++-
T Consensus 191 r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 191 RVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp HHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred HHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 999998877544211 122 3456777887764
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.19 E-value=1.5e-06 Score=73.33 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=65.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC-----CCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR-----RFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 76 (424)
+.+.|+|++|+|||++|+.+++...... ....++++++.... ...............+.+.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 110 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-------------AGAKYRGEFEERLKGVLNDL 110 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-------------TTTCSHHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-------------ccCCccccHHHHHHHHHHHH
Confidence 3578999999999999999998863211 12235555542210 00000000001111111111
Q ss_pred --ccCcEEEEEcCCCCcc---------hhhhhccC-CCCCCcEEEEEecchhhh------c---ccCceEEecCCCHHHH
Q 037045 77 --NDRSYVLFLDGVSSEI---------NFKEIGMH-DDHGRGKVVFACRSREFC------W---QADGVIHVQQLCQREA 135 (424)
Q Consensus 77 --~~~~~LlvlD~~~~~~---------~~~~~~~~-~~~~~~~iiittr~~~~~------~---~~~~~~~l~~l~~~~~ 135 (424)
.+++.+||||+++... ++..+... ....+..+|.||...... . .....+.+..++.++.
T Consensus 111 ~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 111 AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp HHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred hhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 2467899999998752 11111000 122345667666654421 1 3333688888888887
Q ss_pred HHHH
Q 037045 136 KKLF 139 (424)
Q Consensus 136 ~~l~ 139 (424)
.+++
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6553
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.18 E-value=4.3e-05 Score=72.32 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=84.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+-|.|+|++|+|||++|+.+++... . ..+.+++..-.+ ... ..........+...-.....
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~~--~~~------------g~~~~~~~~~~~~a~~~~~~ 209 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLTS--KYV------------GEGEKLVRALFAVARELQPS 209 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC---------------------CHHHHHHHHHHHHHSSSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhhc--ccc------------chHHHHHHHHHHHHHhcCCe
Confidence 3588999999999999999998762 2 233444332211 000 00011111112222234568
Q ss_pred EEEEcCCCCcc-------------hhhhh-----ccCC-CCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHH
Q 037045 82 VLFLDGVSSEI-------------NFKEI-----GMHD-DHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 82 LlvlD~~~~~~-------------~~~~~-----~~~~-~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~ 137 (424)
+|+||+++... ....+ +... ......||.||....... .....+.+...+.++..+
T Consensus 210 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~ 289 (389)
T 3vfd_A 210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289 (389)
T ss_dssp EEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHH
Confidence 99999997541 01111 1111 122344555555433222 333568889999999999
Q ss_pred HHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHH
Q 037045 138 LFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIG 175 (424)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a 175 (424)
++...+.... ....++....|++.+.|+.- +|..+.
T Consensus 290 il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 290 LLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9988876532 12224567789999988654 555554
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.16 E-value=8.5e-06 Score=74.56 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCc--eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFD--IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS 80 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 80 (424)
-+.|+|++|+|||++|+.+++......... ..+.++...-. ..............+.. .+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~--------------~~~~g~~~~~~~~~~~~---~~~ 131 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV--------------GQYIGHTAPKTKEVLKR---AMG 131 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC--------------CSSTTCHHHHHHHHHHH---HTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh--------------hhcccccHHHHHHHHHh---cCC
Confidence 488999999999999998888774322221 23343322110 00000001111111111 145
Q ss_pred EEEEEcCCCCc-----------chhhhh--ccCCCCCCcEEEEEecchhh----------hcccCceEEecCCCHHHHHH
Q 037045 81 YVLFLDGVSSE-----------INFKEI--GMHDDHGRGKVVFACRSREF----------CWQADGVIHVQQLCQREAKK 137 (424)
Q Consensus 81 ~LlvlD~~~~~-----------~~~~~~--~~~~~~~~~~iiittr~~~~----------~~~~~~~~~l~~l~~~~~~~ 137 (424)
.+|+||+++.. .....+ .+.....+..+|.||..... .......+.+++++.++..+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 211 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFE 211 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHH
Confidence 69999999843 122232 11123345677777754321 11333789999999999999
Q ss_pred HHHHHhcc
Q 037045 138 LFWEVVGV 145 (424)
Q Consensus 138 l~~~~~~~ 145 (424)
++...+..
T Consensus 212 il~~~l~~ 219 (309)
T 3syl_A 212 IAGHMLDD 219 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.16 E-value=0.00025 Score=65.63 Aligned_cols=144 Identities=16% Similarity=0.101 Sum_probs=86.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.|.|+|++|+|||++|+.+++.. ... .+.+++........+. ..+.. ..+..+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~--~~~---~~~~~~~~~~~~~~~~--------------------~~~~~--~~~~~v 109 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM--SAN---IKTTAAPMIEKSGDLA--------------------AILTN--LSEGDI 109 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT--TCC---EEEEEGGGCCSHHHHH--------------------HHHHT--CCTTCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHh--CCC---eEEecchhccchhHHH--------------------HHHHh--ccCCCE
Confidence 58899999999999999998876 232 2333433322211111 11111 235678
Q ss_pred EEEcCCCCcch--hhhh-------ccC-------------CCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEIN--FKEI-------GMH-------------DDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~~--~~~~-------~~~-------------~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~ 135 (424)
|+||+++.... ...+ .+. ...++..+|.+|....... .....+.+.+++.++.
T Consensus 110 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 110 LFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL 189 (338)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence 99999887521 1111 000 0111345666665433222 3336899999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
.+++.+.+... .....++....+++.+.|.|..+..+.
T Consensus 190 ~~il~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 190 ALILQKAALKL--NKTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp HHHHHHHHHHT--TCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 99998877543 122335677889999999996655444
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=2.4e-06 Score=79.86 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=75.7
Q ss_pred cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHh--cccCCCcEEEccCC--C------CCcCChhh--hc
Q 037045 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFF--DYMCHLQLLDLHET--N------IGCLPPSI--SR 330 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~~L~~L~l~~~--~------~~~~p~~~--~~ 330 (424)
++|+.|++.++....++.+ .+++|+.|.+..+.++......+ ..+++|+.|+++.+ . +..+.+.+ ..
T Consensus 172 P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp TTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 6788888877632233433 37788888888777653222222 25778888877531 1 11111222 24
Q ss_pred ccccceeeeccccccccc-CChhh---hccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045 331 LINLNALFLRSSCSLLLQ-LPAEI---GRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 331 l~~L~~l~l~~~~~~~~~-lp~~~---~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~ 392 (424)
+++|++|++ .++.+.. .+..+ +.+++|+.|+++.|.+.. ++.++.++++|+.|+++.|.+
T Consensus 251 ~p~Lr~L~L--~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGI--VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEE--ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeC--CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 678888888 5555432 22222 246778888888877663 344456677888888887754
No 189
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.7e-05 Score=73.95 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHH----Hhcc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISK----ELND 78 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~----~l~~ 78 (424)
=|.++|++|+|||.||+.++.... ..| +.++.+.-.+ .-.++....++. .-..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~--~~~---~~v~~s~l~s------------------k~~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIG--ANF---IFSPASGIVD------------------KYIGESARIIREMFAYAKEH 273 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGTCC------------------SSSSHHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEehhhhcc------------------ccchHHHHHHHHHHHHHHhc
Confidence 478999999999999999999883 322 3344332211 001111111221 2234
Q ss_pred CcEEEEEcCCCCcc----------------hhhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045 79 RSYVLFLDGVSSEI----------------NFKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC 131 (424)
Q Consensus 79 ~~~LlvlD~~~~~~----------------~~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~ 131 (424)
.+++|+||+++... .+..+ .-.....+..||.||....... ..+..+++..-+
T Consensus 274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353 (437)
T ss_dssp CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCC
T ss_pred CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcC
Confidence 68999999998531 01111 1112233446666665544332 246678888888
Q ss_pred HHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045 132 QREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 132 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P 168 (424)
.++..++|+.+...... ...+ ...|++.+.|+-
T Consensus 354 ~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 354 EAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 88888898877754321 1222 456888888754
No 190
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2e-05 Score=74.83 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKEL 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 76 (424)
+=|.++|++|+|||.||+.++.... ..| +.++.+.-. ..+..++.+ +...-
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~--~~f---i~vs~s~L~sk~vGesek~ir~l-------------------F~~Ar 299 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD--ATF---IRVIGSELVQKYVGEGARMVREL-------------------FEMAR 299 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGGCCCSSSHHHHHHHHH-------------------HHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC--CCe---EEEEhHHhhcccCCHHHHHHHHH-------------------HHHHH
Confidence 3478999999999999999999883 322 333332211 111111111 11222
Q ss_pred ccCcEEEEEcCCCCcc----------------h----hhhhccCCCCCCcEEEEEecchhhhc-------ccCceEEecC
Q 037045 77 NDRSYVLFLDGVSSEI----------------N----FKEIGMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQ 129 (424)
Q Consensus 77 ~~~~~LlvlD~~~~~~----------------~----~~~~~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~ 129 (424)
...+++|+||+++... . +..+.-.....+..||.||....... ..+..+++..
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 3468999999987531 0 11111112223344555665433222 4677888888
Q ss_pred CCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 130 LCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 130 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
-+.++..++|+.+.......... ....|++.+.|+-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCCC
Confidence 89899999998877554211111 2456888888863
No 191
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.08 E-value=0.00011 Score=65.22 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=79.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.|+|++|+||||+|+.++.... .. .+.++...-.+ .............+.........+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVE--------------MFVGVGASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTT--------------SCCCCCHHHHHHHHHHHHTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHHHH--------------HhhhhhHHHHHHHHHHHHHcCCee
Confidence 478999999999999999999872 22 23443322111 000111111122222223345789
Q ss_pred EEEcCCCCcc----------------hhhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI----------------NFKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~----------------~~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
+++|+++... .+..+ .-.....+..||.||....... .....+.+...+.++-
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 9999985321 01111 0001223445666665443221 2245677888888888
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHH
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLI 174 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~ 174 (424)
.+++............ .....+++.+.| .+..|..+
T Consensus 188 ~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 188 EQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence 8888777654311111 123457778888 66555544
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=3.4e-05 Score=71.06 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=83.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+++.++|++|+|||++|+.+++... ..++.++.+.. .... .+..+....... ...++..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~-i~~~~~~~~~~~--------------~~~~~~~ 107 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDF-VRGPLTNFASAA--------------SFDGRQK 107 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHH-HHTHHHHHHHBC--------------CCSSCEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHH-HHHHHHHHHhhc--------------ccCCCCe
Confidence 3567788899999999999998772 12445554332 2222 222211111000 0123678
Q ss_pred EEEEcCCCCcc---hhhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHH-------HHHHhcc
Q 037045 82 VLFLDGVSSEI---NFKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKL-------FWEVVGV 145 (424)
Q Consensus 82 LlvlD~~~~~~---~~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l-------~~~~~~~ 145 (424)
++++|+++... ..+.+ . +.....++.+|+||....... .....+++++.+.++..++ +.+.+..
T Consensus 108 vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~ 187 (324)
T 3u61_B 108 VIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKH 187 (324)
T ss_dssp EEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 22222 1 111224567777776644322 4556899999998874333 2222222
Q ss_pred cCCCCccHH-HHHHHHHHhcCCchHHHHH
Q 037045 146 HLKKYPDIE-LVADSIVKECGGMPYMLKL 173 (424)
Q Consensus 146 ~~~~~~~~~-~~~~~I~~~~~g~Plai~~ 173 (424)
.. ....+ +....|++.++|.+..+..
T Consensus 188 ~~--~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 188 EG--IAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HT--CCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred cC--CCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 21 11112 6678899999988765443
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=2.3e-05 Score=73.68 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
=|.++|++|+|||.||+.++... ...| +.++.+.-. ..+...+.++. ..-.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~sk~vGesek~ir~lF~-------------------~Ar~ 273 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELIQKYLGDGPRLCRQIFK-------------------VAGE 273 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGCCSSSSHHHHHHHHHHH-------------------HHHH
T ss_pred CCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhhhccCchHHHHHHHHHH-------------------HHHh
Confidence 47899999999999999999988 3332 333322210 11122222211 1113
Q ss_pred cCcEEEEEcCCCCcc----------------h----hhhhccCCCCCCcEEEEEecchhhhc-------ccCceEEecCC
Q 037045 78 DRSYVLFLDGVSSEI----------------N----FKEIGMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQL 130 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~----------------~----~~~~~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l 130 (424)
..+++|+||+++... . +..+.......+..||.||....... ..+..+++..-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 468999999987531 0 11111112233445555665444333 34456778888
Q ss_pred CHHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045 131 CQREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P 168 (424)
+.++..++|+.+...... ...+ ...|++.+.|+-
T Consensus 354 d~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 888888999877754421 1122 456778887763
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.05 E-value=6.3e-06 Score=69.00 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|++|+|||||++.++.......... +++++ ..++...+......... ..... .+ .+.-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~----~~~~~----~~-~~~~ 102 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD----TKFLK----TV-LNSP 102 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC----SHHHH----HH-HTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH----HHHHH----Hh-cCCC
Confidence 4689999999999999999998874222222 33433 34444444443332211 11111 12 2456
Q ss_pred EEEEcCCCC--cchhhh--h-c-cC-CCCCCcEEEEEecchh
Q 037045 82 VLFLDGVSS--EINFKE--I-G-MH-DDHGRGKVVFACRSRE 116 (424)
Q Consensus 82 LlvlD~~~~--~~~~~~--~-~-~~-~~~~~~~iiittr~~~ 116 (424)
+||||+++. ...+.. + . +. ....+..+|+||....
T Consensus 103 llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 103 VLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp EEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 899999973 222221 1 1 11 1234677888886543
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=5.5e-05 Score=70.18 Aligned_cols=151 Identities=12% Similarity=0.131 Sum_probs=86.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
+.++|+.|+||||+|+.++.... ...+. .+..++.+.......+.. ....+.... ..+.+..-+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~~~-------------~~~~~~~~v 113 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVVRN-QIKDFASTR-------------QIFSKGFKL 113 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHHHT-HHHHHHHBC-------------CSSSCSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHHHH-HHHHHHhhc-------------ccCCCCceE
Confidence 78999999999999999999863 12221 133333333222222221 111111000 001234678
Q ss_pred EEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhh-c---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHH
Q 037045 83 LFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFC-W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIE 154 (424)
Q Consensus 83 lvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~-~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 154 (424)
+|+|+++... ..+.+ .+......+.+|++|...... + .....+.+.+++.++..+.+.+.+.... ....+
T Consensus 114 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~--~~i~~ 191 (340)
T 1sxj_C 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK--LKLSP 191 (340)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT--CCBCH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence 9999998653 12222 011122455666666543322 1 4556889999999999998887774321 12224
Q ss_pred HHHHHHHHhcCCchHHH
Q 037045 155 LVADSIVKECGGMPYML 171 (424)
Q Consensus 155 ~~~~~I~~~~~g~Plai 171 (424)
+..+.+++.++|.+..+
T Consensus 192 ~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 192 NAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 56788999999988643
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=2.2e-06 Score=80.09 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=96.1
Q ss_pred cceeEEEeeccCCCC----------CCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhh-
Q 037045 263 AHTKRLSLFGFPSST----------LPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSIS- 329 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~----------~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~- 329 (424)
++|+.|.+....... +.. +..+++|+.|.+++|.-..+++ + .+++|+.|++..+.+.. ....++
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 799999997654321 211 2667899999999873223333 2 37899999999887632 223343
Q ss_pred -cccccceeeecccc-cc------cccCChhh--hccCCCCEEEecCCcCcc-cchhh---hcCCCCCEeeeccccCCCC
Q 037045 330 -RLINLNALFLRSSC-SL------LLQLPAEI--GRLQKLEILDVSHTKVQC-LPSEI---GQLIELKYLRVSRVENVGN 395 (424)
Q Consensus 330 -~l~~L~~l~l~~~~-~~------~~~lp~~~--~~l~~L~~L~l~~~~i~~-lp~~i---~~l~~L~~l~l~~n~~~~~ 395 (424)
.+++|+.|++. .+ +. +..+...+ +.+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.+...
T Consensus 216 ~~lp~L~~L~L~-~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 216 SDLPNLEKLVLY-VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp SBCTTCCEEEEE-CBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred ccCCCCcEEEEe-ccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 68999999983 21 11 11222222 357999999999998762 33333 3678999999999865321
Q ss_pred cccCCCCCCCCcChhhhhccccCceeecC
Q 037045 396 HTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+.......+.++++|+.|+|+
T Consensus 295 --------G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 295 --------GARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp --------HHHHHHTTHHHHTTCSEEECC
T ss_pred --------HHHHHHhhcccCCcceEEECC
Confidence 001123345678899999874
No 197
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2e-05 Score=74.82 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=77.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
=|.+|||+|+|||.||+.++.... ..| +.++.+.-. ..+...+.++. ..-.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~--~~f---~~v~~s~l~~~~vGese~~ir~lF~-------------------~A~~ 272 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTN--ATF---LKLAAPQLVQMYIGEGAKLVRDAFA-------------------LAKE 272 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGGCSSCSSHHHHHHHHHHH-------------------HHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHHhC--CCE---EEEehhhhhhcccchHHHHHHHHHH-------------------HHHh
Confidence 478999999999999999999883 322 333332211 11112222211 1112
Q ss_pred cCcEEEEEcCCCCcc------------h--------hhhhccCCCCCCcEEEEEecchhhhc-------ccCceEEecCC
Q 037045 78 DRSYVLFLDGVSSEI------------N--------FKEIGMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQL 130 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~------------~--------~~~~~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l 130 (424)
..+++|+||+++... . +..+.-.....+-.||.||....... ..+..++++.-
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP 352 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence 468999999986420 0 11110001223334555665443322 45567888888
Q ss_pred CHHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCc
Q 037045 131 CQREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGM 167 (424)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~ 167 (424)
+.++..++|+.+...... ...+ ...|++.+.|+
T Consensus 353 d~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 353 SEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 888888888877654321 1122 45678888875
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=5.2e-06 Score=69.89 Aligned_cols=108 Identities=9% Similarity=0.029 Sum_probs=63.8
Q ss_pred CcccccEEEccCC-CCCCC----ChHHhcccCCCcEEEccCCCCCc-----CChhhhcccccceeeeccccccccc----
Q 037045 283 NCCEILTLILEGK-RLEKL----PTSFFDYMCHLQLLDLHETNIGC-----LPPSISRLINLNALFLRSSCSLLLQ---- 348 (424)
Q Consensus 283 ~~~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~l~l~~~~~~~~~---- 348 (424)
.+++|+.|++++| .+... ....+...++|++|++++|.++. +...+...++|++|++ +++.++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L--~~N~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV--ESNFISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC--CSSCCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC--cCCcCCHHHHH
Confidence 3455566666655 55421 11223344566666666666522 2233344456667776 5555543
Q ss_pred -CChhhhccCCCCEEEe--cCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045 349 -LPAEIGRLQKLEILDV--SHTKVQC-----LPSEIGQLIELKYLRVSRVEN 392 (424)
Q Consensus 349 -lp~~~~~l~~L~~L~l--~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~ 392 (424)
+...+...+.|+.|++ ++|.+.. +...+...++|++|+++.|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3455666678888888 7787763 444456668899999888853
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.96 E-value=9.6e-06 Score=69.24 Aligned_cols=97 Identities=18% Similarity=0.295 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+.+.|+|++|+|||+||+.+++... .....++|+.+. .+...+...+. ......... .+... -
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~----~~~~~-~ 117 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQ----DQTMNEKLD----YIKKV-P 117 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC-------CCCHHHHH----HHHHS-S
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhc----cchHHHHHH----HhcCC-C
Confidence 4688999999999999999999884 333446666543 33333332221 111222222 22222 3
Q ss_pred EEEEcCCCCc--chhhh--h-c-cC--CCCCCcEEEEEecch
Q 037045 82 VLFLDGVSSE--INFKE--I-G-MH--DDHGRGKVVFACRSR 115 (424)
Q Consensus 82 LlvlD~~~~~--~~~~~--~-~-~~--~~~~~~~iiittr~~ 115 (424)
+||||+++.. ..+.. + . +. ....+..+|+||...
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 8999999553 22211 1 0 11 112455788887643
No 200
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.92 E-value=3.7e-05 Score=73.03 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=31.7
Q ss_pred cceeEEEeeccCCCCCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccC
Q 037045 263 AHTKRLSLFGFPSSTLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE 318 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 318 (424)
.+|+.+++.+|.+..++.. ..+.+|+.+.+.. .++.++...|..+++|+.+++..
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 5666677766666654422 3355666666653 35555555566666666666654
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.7e-05 Score=73.79 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=73.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-----HHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-----IRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
=|.++|++|+|||++|+.+++.. ...| +.++.+.-.+ .+..++++ +...-.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~--~~~~---~~v~~~~l~~~~~Ge~e~~ir~l-------------------F~~A~~ 263 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST--KAAF---IRVNGSEFVHKYLGEGPRMVRDV-------------------FRLARE 263 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH--TCEE---EEEEGGGTCCSSCSHHHHHHHHH-------------------HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCe---EEEecchhhccccchhHHHHHHH-------------------HHHHHH
Confidence 37899999999999999999988 3322 3444333111 11112111 111113
Q ss_pred cCcEEEEEcCCCCcc----------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecC
Q 037045 78 DRSYVLFLDGVSSEI----------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQ 129 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~----------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~ 129 (424)
..++++++|+++... .+..+ ++ ....+..||.||....... ..+..+++..
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~-~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~ 342 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF-DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS-CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC-CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence 468999999986320 01122 11 2233445666665443322 3345677766
Q ss_pred CC-HHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045 130 LC-QREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 130 l~-~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P 168 (424)
+. .++-.++|+........ ...+ ...|++.+.|+-
T Consensus 343 lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 343 LRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 64 45555666665543311 1122 456778887753
No 202
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.80 E-value=0.00033 Score=63.43 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.+.++|++|+|||+||+.+++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999988
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.3e-05 Score=71.28 Aligned_cols=78 Identities=21% Similarity=0.196 Sum_probs=43.4
Q ss_pred cccCCCcEEEccCCCCCc---CChhhhcccccceeeecccccccccCChhhhccC--CCCEEEecCCcCc-ccch-----
Q 037045 306 DYMCHLQLLDLHETNIGC---LPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQ--KLEILDVSHTKVQ-CLPS----- 374 (424)
Q Consensus 306 ~~~~~L~~L~l~~~~~~~---~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~--~L~~L~l~~~~i~-~lp~----- 374 (424)
..+++|+.|++++|.+.. +|..+..+++|+.|++ ++|.+..+. .+..+. +|+.|++++|++. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~L--s~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL--SGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEEC--TTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEEC--CCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 346667777777776633 2344455666666666 555555442 233333 6666666666655 3431
Q ss_pred --hhhcCCCCCEee
Q 037045 375 --EIGQLIELKYLR 386 (424)
Q Consensus 375 --~i~~l~~L~~l~ 386 (424)
.+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 245666666665
No 204
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.77 E-value=0.0004 Score=66.96 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=80.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.|+|++|+|||+||+.++.... ..| +.++.+...+. + ...........+.......+++
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~--~~f---~~is~~~~~~~--~------------~g~~~~~~r~lf~~A~~~~p~I 111 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN--VPF---FHISGSDFVEL--F------------VGVGAARVRDLFAQAKAHAPCI 111 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--CCE---EEEEGGGTTTC--C------------TTHHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CCe---eeCCHHHHHHH--H------------hcccHHHHHHHHHHHHhcCCCE
Confidence 378999999999999999999872 222 34443332110 0 0000111122233333457899
Q ss_pred EEEcCCCCcc----------------hhhhhc--cC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI----------------NFKEIG--MH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~----------------~~~~~~--~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
|+||+++... .+..+. +. ....+..||.||....... .....+.++..+.++-
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 9999996531 112220 00 1123445666665543322 2344788888888888
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++++............ ....+++.+.|+.
T Consensus 192 ~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 192 KKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred HHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 88888776543211111 1455888888877
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.76 E-value=0.00035 Score=67.86 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.|+|++|+|||++|+.+++.. ... .+.++++.- ...+ ...........+....++++.+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~--~~~---fv~vn~~~l----------~~~~----~g~~~~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET--GAF---FFLINGPEI----------MSKL----AGESESNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC--SSE---EEEEEHHHH----------HTSC----TTHHHHHHHHHHHHHHHTCSEE
T ss_pred cEEEECcCCCCHHHHHHHHHHHh--CCC---EEEEEchHh----------hhhh----cchhHHHHHHHHHHHHhcCCcE
Confidence 47899999999999999999876 222 344443211 0000 0001111122233333456789
Q ss_pred EEEcCCCCcc-------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045 83 LFLDGVSSEI-------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 83 lvlD~~~~~~-------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l 138 (424)
|+||+++... ....+ .+. ....+..||.||....... .....+.+...+.++..++
T Consensus 301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH
Confidence 9999985321 11112 011 2223445555665442211 3344688999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHH
Q 037045 139 FWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIG 175 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a 175 (424)
+........... +....++++.+.|+ +..|..+.
T Consensus 381 L~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 381 LQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp HHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHH
Confidence 998875432111 11235577777775 54454443
No 206
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.74 E-value=1.8e-05 Score=70.78 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=74.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
+.|+|++|+|||++|+.+++... ..|- .++.+...+ ... .......... +.........+|
T Consensus 47 vll~G~~GtGKT~la~~la~~~~--~~~~---~v~~~~~~~----------~~~-~~~~~~~~~~---~~~a~~~~~~vl 107 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH--VPFF---SMGGSSFIE----------MFV-GLGASRVRDL---FETAKKQAPSII 107 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT--CCCC---CCCSCTTTT----------SCS-SSCSSSSSTT---HHHHHHSCSCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhC--CCEE---EechHHHHH----------hhc-chHHHHHHHH---HHHHHhcCCeEE
Confidence 67899999999999999999873 3221 112111100 000 0011111111 222223456899
Q ss_pred EEcCCCCcch-----------------hhhhc--cC---CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045 84 FLDGVSSEIN-----------------FKEIG--MH---DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 84 vlD~~~~~~~-----------------~~~~~--~~---~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
+||+++.... +..+. +. .......+|.||....... .....+.+...+.++
T Consensus 108 ~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 108 FIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp EESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred EEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 9999975421 22220 00 1112245666665443221 234568888899999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
..+++...+......... ....+++.+.|.+
T Consensus 188 r~~il~~~~~~~~~~~~~---~~~~la~~~~g~~ 218 (268)
T 2r62_A 188 RVEILKVHIKGVKLANDV---NLQEVAKLTAGLA 218 (268)
T ss_dssp HHHHHHHHTSSSCCCSSC---CTTTTTSSSCSSC
T ss_pred HHHHHHHHHhcCCCCCcc---CHHHHHHHcCCCC
Confidence 999998776543111111 1234666677765
No 207
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.74 E-value=0.00012 Score=69.37 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=84.5
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL 339 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l 339 (424)
.+|+.+.+.. .+..++ .+..|.+|+.+++++|.++.++...|. ...|+.+.+..+ +..++ ..|..+++|+.+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 4578888876 555543 358899999999999999998888776 588999999854 65554 45788889999988
Q ss_pred cccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045 340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE 391 (424)
Q Consensus 340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~ 391 (424)
..+ +..++. .+.. .+|+.+.+. +.++.++.. |..+++|+.+.+.+|.
T Consensus 234 --~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 234 --PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp --CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred --CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc
Confidence 443 444443 3333 567777773 345555444 6677777777776654
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=0.00022 Score=65.14 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=46.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCcE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRSY 81 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~ 81 (424)
.+.|+|++|+|||++|+.+++... ..-...+.++++........ ...++........... ..+...+. ....
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~ 121 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHAV----SRLIGAPPGYVGYEEG-GQLTEAVRRRPYS 121 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGCCSTTHH----HHHHCCCTTSTTTTTC-CHHHHHHHHCSSE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeecccccccccH----HHhcCCCCcccccccc-chHHHHHHhCCCe
Confidence 689999999999999999999873 22233566776654332211 1112222111111100 11222222 3457
Q ss_pred EEEEcCCCCc
Q 037045 82 VLFLDGVSSE 91 (424)
Q Consensus 82 LlvlD~~~~~ 91 (424)
+++||+++..
T Consensus 122 vl~lDEi~~l 131 (311)
T 4fcw_A 122 VILFDAIEKA 131 (311)
T ss_dssp EEEEETGGGS
T ss_pred EEEEeChhhc
Confidence 9999999875
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=2.3e-05 Score=69.58 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=65.6
Q ss_pred hcccccceeeecccccccccCC---hhhhccCCCCEEEecCCcCcccchhhhcCC--CCCEeeeccccCCCCcccCCCCC
Q 037045 329 SRLINLNALFLRSSCSLLLQLP---AEIGRLQKLEILDVSHTKVQCLPSEIGQLI--ELKYLRVSRVENVGNHTHADAGS 403 (424)
Q Consensus 329 ~~l~~L~~l~l~~~~~~~~~lp---~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~l~l~~n~~~~~~~~~~~~~ 403 (424)
..+++|++|++ ++|.+..++ ..+..+++|+.|++++|.++.+. .+..++ +|+.|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~L--s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~----- 238 (267)
T 3rw6_A 167 ENIPELLSLNL--SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRD----- 238 (267)
T ss_dssp HHCTTCCEEEC--TTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSS-----
T ss_pred hhCCCCCEEEC--CCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCc-----
Confidence 56889999999 888887654 56789999999999999999773 455555 899999999987664331
Q ss_pred CCCcChhhhhccccCceee
Q 037045 404 GEMISLNIISKLRLLEELI 422 (424)
Q Consensus 404 ~~~~~~~~l~~l~~L~~L~ 422 (424)
........+..+++|+.|+
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 0112234578888888886
No 210
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=2.1e-05 Score=63.47 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
+.++|+|+.|+|||||++.++..... ..+ .+++++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence 46899999999999999999998753 111 266666544
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.67 E-value=0.00052 Score=62.44 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-+.|+|++|+|||++|+.+++..
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 212
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.65 E-value=0.0014 Score=57.84 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=73.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L 82 (424)
+.|+|++|+|||||++.++.... ...+.++.. ++. ... . .. .......+.+.. .....+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~~----~~~-~---~~-~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFV----EMF-V---GV-GAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHH----HSC-T---TH-HHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HHH----HHH-h---hH-HHHHHHHHHHHHHhcCCeE
Confidence 78999999999999999998773 223343321 111 000 0 00 001111222222 234689
Q ss_pred EEEcCCCCcc----------------hhhhh--ccCC-CCCC-cEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI----------------NFKEI--GMHD-DHGR-GKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~----------------~~~~~--~~~~-~~~~-~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
+++|+++... ....+ .+.. .... .-++.+|....... .....++++..+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 9999985321 01111 0111 1122 23334554433332 3456788888888888
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.++++........... .....+++.+.|+-
T Consensus 192 ~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 8888776643211111 12345777777764
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=3.7e-05 Score=64.61 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHhcccCCCcEEEccCC-CCCc-----CChhhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc
Q 037045 303 SFFDYMCHLQLLDLHET-NIGC-----LPPSISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC 371 (424)
Q Consensus 303 ~~~~~~~~L~~L~l~~~-~~~~-----~p~~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~ 371 (424)
..+...+.|+.|++++| .++. +...+...++|++|++ +++.++. +...+...+.|+.|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L--s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI--VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC--TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC--cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34566889999999999 8833 3344556789999999 7777763 34556667899999999999874
Q ss_pred -----cchhhhcCCCCCEeee--ccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045 372 -----LPSEIGQLIELKYLRV--SRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424 (424)
Q Consensus 372 -----lp~~i~~l~~L~~l~l--~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 424 (424)
+...+...++|++|++ ++|.+... +.......+...++|++|+|+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEecc
Confidence 4556778889999999 77865311 011233455666889999875
No 214
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.63 E-value=0.0016 Score=58.20 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=66.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC--HHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCc
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN--IRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRS 80 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~ 80 (424)
+.|+|++|+||||||+.++.... . ..+++......+ ..... .....+.+.. ....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~~~~~~~-----------------~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNMYVGESE-----------------RAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSSTTHHHH-----------------HHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhhhhhHHH-----------------HHHHHHHHHHHhcCC
Confidence 78999999999999999999763 2 244444322111 00000 0111111111 2357
Q ss_pred EEEEEcCCCCcch-------------hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHH
Q 037045 81 YVLFLDGVSSEIN-------------FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAK 136 (424)
Q Consensus 81 ~LlvlD~~~~~~~-------------~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~ 136 (424)
+++++|+++.... ...+ .+. ......-++.+|....... .-+..+.++.-+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999875310 1111 000 1122333444555443333 34667788888999989
Q ss_pred HHHHHHhc
Q 037045 137 KLFWEVVG 144 (424)
Q Consensus 137 ~l~~~~~~ 144 (424)
++++....
T Consensus 185 ~il~~~~~ 192 (274)
T 2x8a_A 185 AILKTITK 192 (274)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99987764
No 215
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.62 E-value=0.00017 Score=73.68 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
=|.++|++|+|||+||+.+++.. ..+ .+.++...- .. .............+.......+++
T Consensus 240 GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~l----------~s----k~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANET--GAF---FFLINGPEI----------MS----KLAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHHH----------HS----SCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHHh----------hc----ccchHHHHHHHHHHHHHHHcCCeE
Confidence 47899999999999999999977 222 344442210 00 001111111122222233456899
Q ss_pred EEEcCCCCcc-------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045 83 LFLDGVSSEI-------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 83 lvlD~~~~~~-------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~ 137 (424)
|+||+++... ...++ ++ ....+..||.||....... .-...+++..-+.++-.+
T Consensus 301 IfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~ 379 (806)
T 3cf2_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHH
Confidence 9999987531 01122 11 1222334555555433322 345678888888888889
Q ss_pred HHHHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045 138 LFWEVVGVH-LKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 138 l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P 168 (424)
+++...... ..... ....|++.+.|+-
T Consensus 380 IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 380 ILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp HHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred HHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 888766443 11122 2456888888764
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.62 E-value=0.0016 Score=58.37 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=73.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV 82 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L 82 (424)
+.|+|++|+|||||++.++.... ...+.++.. ++.. ... .. .......+.+.. .....+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~~~~----~~~----~~-~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFVE----MFV----GV-GAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHHH----STT----TH-HHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------HHHH----HHh----hH-HHHHHHHHHHHHHhcCCcE
Confidence 78999999999999999998773 223444321 1110 000 00 001111122222 234689
Q ss_pred EEEcCCCCcc----------------hhhhh--ccCC-CCCC-cEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045 83 LFLDGVSSEI----------------NFKEI--GMHD-DHGR-GKVVFACRSREFCW-------QADGVIHVQQLCQREA 135 (424)
Q Consensus 83 lvlD~~~~~~----------------~~~~~--~~~~-~~~~-~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~ 135 (424)
+++|+++... .+..+ .+.. .... .-++.+|....... .....++++..+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 9999985321 01111 1111 1112 23334554433332 3456788888899888
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
.+++............ .....+++.+.|+.
T Consensus 216 ~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 8888876643211111 12445777777765
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00076 Score=61.24 Aligned_cols=124 Identities=14% Similarity=0.062 Sum_probs=74.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC--CCCceEEEEEecc-CCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES--RRFDIIFWENINT-DGNIRDIQEIILERLKVNAKELNNDLRADIISKELND 78 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 78 (424)
+...++|+.|+||||+|+.+++..... .+.+ +.+++... ....+++ +++........ ..+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p---------------~~~ 81 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP---------------ELY 81 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC---------------SSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc---------------ccC
Confidence 467899999999999999998863211 2333 34555432 2333333 22333332111 124
Q ss_pred CcEEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEEEecch-hhhc--ccCceEEecCCCHHHHHHHHHHHh
Q 037045 79 RSYVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVFACRSR-EFCW--QADGVIHVQQLCQREAKKLFWEVV 143 (424)
Q Consensus 79 ~~~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iiittr~~-~~~~--~~~~~~~l~~l~~~~~~~l~~~~~ 143 (424)
++-++|+|+++... ..+.+ . +-.....+.+|++|.+. .+.+ ..- .+++.++++++..+.+.+..
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 56799999998763 22323 1 11233456666665443 3333 333 99999999999999998876
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.55 E-value=0.017 Score=53.09 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=38.0
Q ss_pred ceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045 123 GVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG 175 (424)
Q Consensus 123 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a 175 (424)
....+++.+.++..+++.+.+.... ....++.+..|++.+.|.|..+..+.
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 4578999999999999988775331 22335678999999999997654443
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.54 E-value=0.00033 Score=60.30 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc---------c-cccCh---hHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN---------A-KELNN---DLR 68 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------~-~~~~~---~~~ 68 (424)
.++.|.|++|+|||||+..++. . .-..++|++.....+...+.. +....+.. . ...+. .+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4789999999999999999998 2 124688888766555554443 33322211 0 11111 223
Q ss_pred HHHHHHHhccCcEEEEEcCCCCc
Q 037045 69 ADIISKELNDRSYVLFLDGVSSE 91 (424)
Q Consensus 69 ~~~l~~~l~~~~~LlvlD~~~~~ 91 (424)
...++.....+.-++|+|.+...
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHHH
Confidence 34444444334668999987654
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=0.0003 Score=65.07 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|+|++|+|||||+.+++.... ..-..++|++.....+.. .++.++... ...+.++....+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 4789999999999999999998873 222357888876665544 344554332 344455555555555
Q ss_pred hcc-CcEEEEEcCCCCc
Q 037045 76 LND-RSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~~ 91 (424)
.+. +.-++|+|.+...
T Consensus 135 ~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHTSCCSEEEEECTTTC
T ss_pred hhhcCCCeEEehHhhhh
Confidence 543 4458889988665
No 221
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.52 E-value=0.00011 Score=61.20 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+.|+|++|+|||++|+.+++...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998873
No 222
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.52 E-value=0.0023 Score=62.04 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=77.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc----C
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND----R 79 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~----~ 79 (424)
+.|+|++|+|||+||+.++.... ...+.++...-.+ .........+...++. .
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~------------------~~~g~~~~~v~~lfq~a~~~~ 123 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE------------------MFVGVGAARVRDLFETAKRHA 123 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS------------------SCTTHHHHHHHHHTTTSSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH------------------hhhhhHHHHHHHHHHHHHhcC
Confidence 78999999999999999998773 2234454432111 0011122233333432 3
Q ss_pred cEEEEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCH
Q 037045 80 SYVLFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQ 132 (424)
Q Consensus 80 ~~LlvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~ 132 (424)
.+++++|+++... .+.++ .+. .......++.+|....... ..+..+.++..+.
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCH
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCH
Confidence 5899999986431 01122 111 1122234444555443322 3456788888888
Q ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045 133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P 168 (424)
++-.++++..+........ .....|++.+.|+.
T Consensus 204 ~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 204 KGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred HHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 8888888766543211111 12456888888876
No 223
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.52 E-value=0.00047 Score=66.80 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=63.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC---C-c-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR---F-D-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
-+.|+|++|+|||++|+.+++....... . + .++.++++. . ............+...-.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-------------~----~~g~~e~~~~~~~~~~~~ 265 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-------------K----YRGEFEDRLKKVMDEIRQ 265 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------------c----ccchHHHHHHHHHHHHHh
Confidence 3679999999999999999998632111 1 1 133333330 0 000001111122222223
Q ss_pred cCcEEEEEcCCCCcchhhhhccCC-CCCCcEEEEEecchhh------hc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045 78 DRSYVLFLDGVSSEINFKEIGMHD-DHGRGKVVFACRSREF------CW---QADGVIHVQQLCQREAKKLFWEVVGV 145 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~~~~~~~~~-~~~~~~iiittr~~~~------~~---~~~~~~~l~~l~~~~~~~l~~~~~~~ 145 (424)
.++.+|++|. .. +......+. ......+|.+|..... .. .....+.++..+.++..+++......
T Consensus 266 ~~~~iLfiD~--~~-~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 266 AGNIILFIDA--AI-DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp CCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred cCCeEEEEeC--ch-hHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 5678999992 11 222221221 2223456665554431 11 44457999999999999999876643
No 224
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.49 E-value=0.00018 Score=57.68 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=48.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.|+|++|+|||++|+.+++... ..-...+ +++....+. ......+.. .+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~~~~--------------------~~~~~~~~~---a~~g~ 79 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTPDNA--------------------PQLNDFIAL---AQGGT 79 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCTTTS--------------------SCHHHHHHH---HTTSC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCCCcc--------------------hhhhcHHHH---cCCcE
Confidence 378999999999999999998753 2111223 665543221 000111111 13457
Q ss_pred EEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecc
Q 037045 83 LFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRS 114 (424)
Q Consensus 83 lvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~ 114 (424)
|+||+++.... ...+ .+.......++|.||..
T Consensus 80 l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 89999987642 2222 11233345677777754
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.46 E-value=0.00046 Score=62.14 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=55.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHH-HHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLR-ADIISKE 75 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-~~~l~~~ 75 (424)
++-|+|++|+|||||+.+++........-..++|++.....+.. -++.++... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 57899999999999999998877421113468999987776654 256666543 33344444 3333332
Q ss_pred --hc-cCcEEEEEcCCCCc
Q 037045 76 --LN-DRSYVLFLDGVSSE 91 (424)
Q Consensus 76 --l~-~~~~LlvlD~~~~~ 91 (424)
++ .+.-++|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 33 35679999988765
No 226
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.45 E-value=5.4e-05 Score=62.39 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=61.1
Q ss_pred cccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-CCc-CChhhhcc----cccceeeecccccccccC-Chhhhcc
Q 037045 284 CCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGC-LPPSISRL----INLNALFLRSSCSLLLQL-PAEIGRL 356 (424)
Q Consensus 284 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~-~p~~~~~l----~~L~~l~l~~~~~~~~~l-p~~~~~l 356 (424)
-..|+.|+++++.++...-..+..+++|+.|++++|. +++ .-..+..+ ++|++|+++ .|..+++- -..+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls-~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII-SCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE-SCTTCCHHHHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC-CCCcCCHHHHHHHhcC
Confidence 3468888888888876544446778889999998884 533 22345543 478999995 66666632 2356788
Q ss_pred CCCCEEEecCCc-Ccc
Q 037045 357 QKLEILDVSHTK-VQC 371 (424)
Q Consensus 357 ~~L~~L~l~~~~-i~~ 371 (424)
++|+.|+++++. ++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 999999999986 664
No 227
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.45 E-value=0.00012 Score=66.21 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
+++.|+|++|+|||+||.+++... -..+.|++...... +.. ...+.++....+.+.+...+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~-----------v~~--~~~~le~~l~~i~~~l~~~~- 184 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEP-----------LSG--YNTDFNVFVDDIARAMLQHR- 184 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCS-----------STT--CBCCHHHHHHHHHHHHHHCS-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhh-----------hhh--hhcCHHHHHHHHHHHHhhCC-
Confidence 467899999999999999998862 11355666611111 000 00233444555555665666
Q ss_pred EEEEcCCCCc
Q 037045 82 VLFLDGVSSE 91 (424)
Q Consensus 82 LlvlD~~~~~ 91 (424)
++|+|++...
T Consensus 185 LLVIDsI~aL 194 (331)
T 2vhj_A 185 VIVIDSLKNV 194 (331)
T ss_dssp EEEEECCTTT
T ss_pred EEEEeccccc
Confidence 9999998765
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.41 E-value=0.00028 Score=73.70 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=72.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC---C--CceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR---R--FDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~---~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
-+.|+|++|+|||++|+.+++...... . -..+++++++.-..... ...........+.+.+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~-------------~~g~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-------------YRGEFEERLKAVIQEVV 259 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc-------------cchHHHHHHHHHHHHHH
Confidence 368999999999999999999863211 1 12355555432211000 00011122222222222
Q ss_pred --cCcEEEEEcCCCCcch-------hh--hhccC-CCCCCcEEEEEecchhh-----hc---ccCceEEecCCCHHHHHH
Q 037045 78 --DRSYVLFLDGVSSEIN-------FK--EIGMH-DDHGRGKVVFACRSREF-----CW---QADGVIHVQQLCQREAKK 137 (424)
Q Consensus 78 --~~~~LlvlD~~~~~~~-------~~--~~~~~-~~~~~~~iiittr~~~~-----~~---~~~~~~~l~~l~~~~~~~ 137 (424)
+++.+|+||+++.... ++ .+..+ -......+|.+|..... .. .....+.+++.+.++..+
T Consensus 260 ~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 260 QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp TTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 3679999999987531 11 11001 11223445555544322 11 444569999999999999
Q ss_pred HHHHHhccc--CCCCccHHHHHHHHHHhc
Q 037045 138 LFWEVVGVH--LKKYPDIELVADSIVKEC 164 (424)
Q Consensus 138 l~~~~~~~~--~~~~~~~~~~~~~I~~~~ 164 (424)
++....... .......++....+++.+
T Consensus 340 iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 340 ILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 997544211 111222244455555555
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.40 E-value=0.00047 Score=63.91 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++... ...+.++....+...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4789999999999999999997763 223458899987765543 244454332 223444545555544
Q ss_pred hcc-CcEEEEEcCCCCc
Q 037045 76 LND-RSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~~ 91 (424)
.+. +.-+||+|.+...
T Consensus 135 ~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HTTTCCSEEEEECGGGC
T ss_pred HhcCCCCEEEEcChHhh
Confidence 443 3558999987654
No 230
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.39 E-value=0.00053 Score=63.86 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++... ...+.++....+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 4789999999999999999988763 222468999987766543 234444332 223445555566555
Q ss_pred hccC-cEEEEEcCCCCc
Q 037045 76 LNDR-SYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~~-~~LlvlD~~~~~ 91 (424)
.+.. --+||+|.+...
T Consensus 148 ~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HTTTCCSEEEEECTTTC
T ss_pred HhcCCCCEEEEeChHHh
Confidence 5443 458999987654
No 231
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.37 E-value=0.00048 Score=63.94 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|.|++|+||||||.+++.... ..-..++|++.....+... +..++... ...+.++....++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 4789999999999999999998763 2224689999877665432 34444332 122334444444443
Q ss_pred hcc-CcEEEEEcCCCCc
Q 037045 76 LND-RSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~~ 91 (424)
.+. ..-+||+|.+...
T Consensus 137 ~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHTCCSEEEEECGGGC
T ss_pred HhccCCCEEEEcCHHHh
Confidence 333 3448899987544
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.0017 Score=62.64 Aligned_cols=51 Identities=8% Similarity=-0.143 Sum_probs=35.9
Q ss_pred ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhc-CCchHHHH
Q 037045 120 QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKEC-GGMPYMLK 172 (424)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~-~g~Plai~ 172 (424)
.....+.+.+++.++..+++..++.... ....++.+..|++.+ .|.|....
T Consensus 356 sR~~~~~~~~~~~~e~~~iL~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 356 DRVMIIRTMLYTPQEMKQIIKIRAQTEG--INISEEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred hhcceeeCCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHH
Confidence 5556679999999999999988764321 122345667788888 77776443
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.36 E-value=0.00073 Score=62.05 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhcccc----------cccChh-
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKVNA----------KELNND- 66 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~- 66 (424)
+++.|+|++|+||||||.+++....... .-..++|++....++.+.+.+ +++.++... ...+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 4789999999999999999998753111 024689999887766666553 344454321 111222
Q ss_pred --HHHHHHHHHhcc--CcEEEEEcCCCCc
Q 037045 67 --LRADIISKELND--RSYVLFLDGVSSE 91 (424)
Q Consensus 67 --~~~~~l~~~l~~--~~~LlvlD~~~~~ 91 (424)
+....+.+.++. +.-+||+|.+...
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 233445555543 4558899987654
No 234
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=0.00019 Score=59.13 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCcEEEccCCCCCc-CChhhhcccccceeeecccccccccC-Chhhhc----cCCCCEEEecCCc-Cc--ccchhhhcCC
Q 037045 310 HLQLLDLHETNIGC-LPPSISRLINLNALFLRSSCSLLLQL-PAEIGR----LQKLEILDVSHTK-VQ--CLPSEIGQLI 380 (424)
Q Consensus 310 ~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~l~~~~~~~~~l-p~~~~~----l~~L~~L~l~~~~-i~--~lp~~i~~l~ 380 (424)
.|+.||++++.+.+ --..+..+++|+.|+++ .|..+++- -..+.. +++|+.|++++|. ++ .+ ..+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~-~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC-KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEE-SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeC-CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 58888888887732 23456778888888884 55555532 223443 2468888888875 76 23 3467778
Q ss_pred CCCEeeecccc
Q 037045 381 ELKYLRVSRVE 391 (424)
Q Consensus 381 ~L~~l~l~~n~ 391 (424)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888875
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.0015 Score=56.96 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhcccc----------cccChhH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKVNA----------KELNNDL 67 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~ 67 (424)
.++.|.|++|+|||||+..++....... .-..++|++.........+. +++..++... ...+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4789999999999999999998642111 23568998876654544433 3334443221 1112222
Q ss_pred H---HHHHHHHhcc-CcEEEEEcCCCCc
Q 037045 68 R---ADIISKELND-RSYVLFLDGVSSE 91 (424)
Q Consensus 68 ~---~~~l~~~l~~-~~~LlvlD~~~~~ 91 (424)
. ...+.+.+.. +.-++|+|++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 1 2234444433 4568889987654
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=0.0012 Score=65.10 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
..+.|+|++|+||||||+.++... ...| ..+.++...+...+.......++. ........+. ......-
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~~~ig~-----~~~~~~~~~~-~a~~~~~ 177 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRRTYVGA-----MPGRIIQGMK-KAGKLNP 177 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC-------------------------CHHHHHH-TTCSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHHHHhcc-----CchHHHHHHH-HhhccCC
Confidence 468999999999999999999987 2222 223333322211111111111111 0111111111 1222344
Q ss_pred EEEEcCCCCcchh------hhh-c---------cCCC-------CCCcEEEEEecchhhhc----ccCceEEecCCCHHH
Q 037045 82 VLFLDGVSSEINF------KEI-G---------MHDD-------HGRGKVVFACRSREFCW----QADGVIHVQQLCQRE 134 (424)
Q Consensus 82 LlvlD~~~~~~~~------~~~-~---------~~~~-------~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~ 134 (424)
++++|+++....- +.+ . +... .....+|.||....... .....+++.+++.++
T Consensus 178 vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e 257 (543)
T 3m6a_A 178 VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIE 257 (543)
T ss_dssp EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHH
T ss_pred EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHH
Confidence 8889998865211 111 0 0000 13345665665443332 333578999999999
Q ss_pred HHHHHHHHh
Q 037045 135 AKKLFWEVV 143 (424)
Q Consensus 135 ~~~l~~~~~ 143 (424)
-.+++.+..
T Consensus 258 ~~~Il~~~l 266 (543)
T 3m6a_A 258 KLEIVKDHL 266 (543)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 888887655
No 237
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.0014 Score=60.74 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=39.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 57 (424)
+++.|+|++|+||||||.+++....... .-..++|++....++.+.+.+ ++..++
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4789999999999999999998753211 234689999887767666553 334444
No 238
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.0012 Score=67.98 Aligned_cols=123 Identities=19% Similarity=0.161 Sum_probs=64.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCC---C-Cce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESR---R-FDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
-+.|+|++|+|||++|+.+++...... . .+. ++.++. +..............+.....
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~~G~~e~~l~~~~~~~~~ 265 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKYRGEFEDRLKKVMDEIRQ 265 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccccchHHHHHHHHHHHHHh
Confidence 367999999999999999999863211 1 111 222222 000011111122222333333
Q ss_pred cCcEEEEEcCCCCcchhhhhccC-CCCCCcEEEEEecchhh------hc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045 78 DRSYVLFLDGVSSEINFKEIGMH-DDHGRGKVVFACRSREF------CW---QADGVIHVQQLCQREAKKLFWEVVGV 145 (424)
Q Consensus 78 ~~~~LlvlD~~~~~~~~~~~~~~-~~~~~~~iiittr~~~~------~~---~~~~~~~l~~l~~~~~~~l~~~~~~~ 145 (424)
.++.+|++|.. . +......+ -......+|.+|..... .. .....+.++..+.++..+++......
T Consensus 266 ~~~~iLfiD~~--~-~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 266 AGNIILFIDAA--I-DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred cCCEEEEEcCc--h-hHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 56889999921 1 22222122 22334566666665442 11 34467999999999999999866543
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.25 E-value=0.0013 Score=67.95 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
.+.++|++|+|||++|+.+++... ..-...+.++++...+..... .......++ +....+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~~---------------~~~l~~~~~---~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHSTS---------------GGQLTEKVR---RKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCCC------------------CHHHHH---HCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccccc---------------cchhhHHHH---hCCCeE
Confidence 588999999999999999999872 333345677765542210000 001111111 123458
Q ss_pred EEEcCCCCcch--hhhh-------ccC------CCCCCcEEEEEecchh-------------hhc----ccCceEEecCC
Q 037045 83 LFLDGVSSEIN--FKEI-------GMH------DDHGRGKVVFACRSRE-------------FCW----QADGVIHVQQL 130 (424)
Q Consensus 83 lvlD~~~~~~~--~~~~-------~~~------~~~~~~~iiittr~~~-------------~~~----~~~~~~~l~~l 130 (424)
|+||+++.... ...+ .+. ....+..||.||.... +.+ .-...+.+.++
T Consensus 583 l~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l 662 (758)
T 3pxi_A 583 VLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL 662 (758)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--
T ss_pred EEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC
Confidence 99999987531 1111 111 1234567888887311 111 33368899999
Q ss_pred CHHHHHHHHHHHh
Q 037045 131 CQREAKKLFWEVV 143 (424)
Q Consensus 131 ~~~~~~~l~~~~~ 143 (424)
++++..+++...+
T Consensus 663 ~~~~~~~i~~~~l 675 (758)
T 3pxi_A 663 EKKHLTEIVSLMS 675 (758)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888876655
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.23 E-value=0.0022 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-|.|+|++|+|||++|+.+++..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEEEECCCCchHHHHHHHHHHhC
Confidence 47899999999999999999876
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.19 E-value=0.00088 Score=58.05 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccccc--------------------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAK-------------------- 61 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 61 (424)
.+++|.|++|+|||||++.++..... .-..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 47899999999999999999976531 123467766433 3444443332 3332110
Q ss_pred ----ccChhHHHHHHHHHhcc-C--cEEEEEcCCCCcc--h---hhhh--ccC--CCCCCcEEEEEecch
Q 037045 62 ----ELNNDLRADIISKELND-R--SYVLFLDGVSSEI--N---FKEI--GMH--DDHGRGKVVFACRSR 115 (424)
Q Consensus 62 ----~~~~~~~~~~l~~~l~~-~--~~LlvlD~~~~~~--~---~~~~--~~~--~~~~~~~iiittr~~ 115 (424)
..+.++....+.+.+.. + ..++|+|...... + ...+ .+. ....+..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01233444444443322 3 3499999987432 1 1222 011 123467888888765
No 242
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.00095 Score=59.34 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
-|.|+|++|+|||++|+.+++... ..-...+.++++..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC
Confidence 478999999999999999998763 22223556666654
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.16 E-value=0.0047 Score=63.68 Aligned_cols=128 Identities=21% Similarity=0.240 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEE-EEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFW-ENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN 77 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 77 (424)
-+.|+|++|+|||++|+.+++....... .+..+| ++++.- +.........+.....+.+.+.
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~e~~l~~~~~~~~ 275 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTKYRGDFEKRFKALLKQLE 275 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCCCSSCHHHHHHHHHHHHS
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hccccccchHHHHHHHHHHHHH
Confidence 4689999999999999999987632111 122222 222111 0000011112222222333332
Q ss_pred -cCcEEEEEcCCCCcc--------hh--hhhccC-CCCCCcEEEEEecchhhh------c---ccCceEEecCCCHHHHH
Q 037045 78 -DRSYVLFLDGVSSEI--------NF--KEIGMH-DDHGRGKVVFACRSREFC------W---QADGVIHVQQLCQREAK 136 (424)
Q Consensus 78 -~~~~LlvlD~~~~~~--------~~--~~~~~~-~~~~~~~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~ 136 (424)
.++.+|+||+++... .. ..+..+ -......+|.+|...... . .....+.++..+.++..
T Consensus 276 ~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~ 355 (758)
T 1r6b_X 276 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV 355 (758)
T ss_dssp SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHH
T ss_pred hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHH
Confidence 357899999998651 11 122112 223345666666543321 1 33346889999999999
Q ss_pred HHHHHHh
Q 037045 137 KLFWEVV 143 (424)
Q Consensus 137 ~l~~~~~ 143 (424)
+++....
T Consensus 356 ~il~~l~ 362 (758)
T 1r6b_X 356 QIINGLK 362 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887655
No 244
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.13 E-value=0.00023 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-|.|+|++|+|||++|+.+++..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 37799999999999999998866
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.10 E-value=0.0016 Score=59.73 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC----------CCC----ceEEEEEeccCCCHHHHHHHHHHHhcccc-------
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES----------RRF----DIIFWENINTDGNIRDIQEIILERLKVNA------- 60 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------- 60 (424)
+++.|+|++|+|||+||.+++...... ..- ..++|++....++.+.+.+. ++.++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcCE
Confidence 478999999999999999999764211 111 46899998887667666543 34444321
Q ss_pred ---cccChh---HHHHHHHHHhcc-C-cEEEEEcCCCCc
Q 037045 61 ---KELNND---LRADIISKELND-R-SYVLFLDGVSSE 91 (424)
Q Consensus 61 ---~~~~~~---~~~~~l~~~l~~-~-~~LlvlD~~~~~ 91 (424)
...+.+ +....+.+.++. . .-+||+|.+...
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 112222 223344444443 3 448888887543
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.00042 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.+|+|.|++|+||||+++.+++..
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999887
No 247
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.97 E-value=0.00026 Score=60.94 Aligned_cols=109 Identities=16% Similarity=0.016 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccChhHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNNDLRADIISKELND 78 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~ 78 (424)
.++.|+|+.|+||||++..++.+.. .+-..++.+...... . ...+++..++... ......+....+.+.+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 4788999999999999999998884 333334444322221 1 1123444444332 222223334444443433
Q ss_pred CcE-EEEEcCCCCcc--hhhhhcc-CCCCCCcEEEEEecchhh
Q 037045 79 RSY-VLFLDGVSSEI--NFKEIGM-HDDHGRGKVVFACRSREF 117 (424)
Q Consensus 79 ~~~-LlvlD~~~~~~--~~~~~~~-~~~~~~~~iiittr~~~~ 117 (424)
.++ +||+|.++... .++.+.. .+ .+..||+|-+..+.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSBCT
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccccc
Confidence 445 99999998642 3333311 12 26778888876554
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.96 E-value=0.00066 Score=56.76 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC---CCHHHHHHHHHHHhccc-----------c---cccCh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD---GNIRDIQEIILERLKVN-----------A---KELNN 65 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~-----------~---~~~~~ 65 (424)
.|.|++..|.||||+|--++-+.- .+--.+.++.+.+. .....+++.+. +... . +....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHHH
Confidence 567888888999999999988873 44345666655442 23334444431 1000 0 00111
Q ss_pred hHHHHHHHHHhccCcE-EEEEcCCCCc-----chhhhh--ccCCCCCCcEEEEEecchhhhc--ccCceEEec
Q 037045 66 DLRADIISKELNDRSY-VLFLDGVSSE-----INFKEI--GMHDDHGRGKVVFACRSREFCW--QADGVIHVQ 128 (424)
Q Consensus 66 ~~~~~~l~~~l~~~~~-LlvlD~~~~~-----~~~~~~--~~~~~~~~~~iiittr~~~~~~--~~~~~~~l~ 128 (424)
.......++.+.+.+| |||+|++-.. ...+++ .+...-....+|+|+|...-.. ..+.+-+|.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeec
Confidence 2233445556666677 9999997432 122222 1123445678999999854332 334444444
No 249
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.96 E-value=0.00069 Score=61.71 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI 39 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 39 (424)
+-+.|+|++|+|||+||..+++.... .....+.++.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 35789999999999999999998741 22223555554
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.95 E-value=0.0029 Score=59.53 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=37.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKV 58 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 58 (424)
.++.|.|++|+|||||+..++-...... .-..++|++.........+. .+++.++.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 4789999999999999998874432111 23468898876655555443 35555543
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.87 E-value=0.0062 Score=62.96 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-|.|+|++|+||||||+.++... ... .+.++..... ..............+.........+
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l--~~~---~i~v~~~~l~--------------~~~~g~~~~~l~~vf~~a~~~~p~i 300 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANET--GAF---FFLINGPEIM--------------SKLAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTT--TCE---EEEEEHHHHS--------------SSSTTHHHHHHHHHHHHHHHHCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHc--CCc---EEEEEchHhh--------------hhhhhhHHHHHHHHHHHHHhcCCcE
Confidence 58899999999999999999876 222 2334321110 0000000111112222222346789
Q ss_pred EEEcCCCCcc-------------hhhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045 83 LFLDGVSSEI-------------NFKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKL 138 (424)
Q Consensus 83 lvlD~~~~~~-------------~~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l 138 (424)
+++|+++... ....+ .-........+|.||....... .....+.+...+.++..++
T Consensus 301 l~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~i 380 (806)
T 1ypw_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHH
T ss_pred EEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHH
Confidence 9999985431 01111 1112223445555655433222 2234567788888888888
Q ss_pred HHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045 139 FWEVVGVHLK-KYPDIELVADSIVKECGGMP 168 (424)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P 168 (424)
+......... .... ..++++.+.|+.
T Consensus 381 l~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 381 LQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp HHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred HHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 8876644311 1111 334566666654
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.85 E-value=0.025 Score=52.14 Aligned_cols=151 Identities=8% Similarity=-0.060 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
++..++|+.|.||++.+..+.+... ...|+....+.+....+..++...+.. .-+-+.+-
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~plf~~~k 78 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSLFASRQ 78 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHHH-------------------HHHCCSCE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhcC-------------------cCCccCCe
Confidence 4788999999999999999988763 223432222223333344433322211 11235677
Q ss_pred EEEEcCCCC-c--chhhhh--ccCCCCCCcEEEEEecc-------hhhhc---ccCceEEecCCCHHHHHHHHHHHhccc
Q 037045 82 VLFLDGVSS-E--INFKEI--GMHDDHGRGKVVFACRS-------REFCW---QADGVIHVQQLCQREAKKLFWEVVGVH 146 (424)
Q Consensus 82 LlvlD~~~~-~--~~~~~~--~~~~~~~~~~iiittr~-------~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~ 146 (424)
++|+|+++. . ...+.+ .+.....++.+|+++.. ..+.. .....++..+++.++..+.+.+.+...
T Consensus 79 vvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 79 TLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp EEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 889999876 3 233444 11222346666666543 12222 567889999999999998888877543
Q ss_pred CCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045 147 LKKYPDIELVADSIVKECGGMPYMLKLI 174 (424)
Q Consensus 147 ~~~~~~~~~~~~~I~~~~~g~Plai~~~ 174 (424)
.....++.+..+++.++|....+...
T Consensus 159 --g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 159 --NLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp --TCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 22333567888999999988776543
No 253
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.84 E-value=0.0019 Score=66.05 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL 83 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 83 (424)
|.++|++|+|||.+|+.++.... .. ++.+... + ++.. ....++......+...-+..+++|
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~~----~----l~s~----~vGese~~vr~lF~~Ar~~~P~Ii 574 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKGP----E----LLTM----WFGESEANVREIFDKARQAAPCVL 574 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCHH----H----HHTT----TCSSCHHHHHHHHHHHHTTCSEEE
T ss_pred EEEecCCCCCchHHHHHHHHHhC--Cc-----eEEeccc----h----hhcc----ccchHHHHHHHHHHHHHHcCCcee
Confidence 67999999999999999999872 22 2333221 1 1111 111122222222222223468999
Q ss_pred EEcCCCCcc----------------hhhhh-----ccCCCCCCcEEEE-Eecchhhhc-------ccCceEEecCCCHHH
Q 037045 84 FLDGVSSEI----------------NFKEI-----GMHDDHGRGKVVF-ACRSREFCW-------QADGVIHVQQLCQRE 134 (424)
Q Consensus 84 vlD~~~~~~----------------~~~~~-----~~~~~~~~~~iii-ttr~~~~~~-------~~~~~~~l~~l~~~~ 134 (424)
+||+++... .+.++ ++ ......+|| ||....... .-+..+++..-+.++
T Consensus 575 fiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~--~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~ 652 (806)
T 3cf2_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp ECSCGGGCC--------------CHHHHHHHHHHHSS--CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred echhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC--CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH
Confidence 999988531 11222 11 112223444 443322211 456777887767777
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCc
Q 037045 135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGM 167 (424)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~ 167 (424)
-.++|+....+.... .+ .....|++.+.|+
T Consensus 653 R~~il~~~l~~~~~~-~~--~dl~~la~~t~g~ 682 (806)
T 3cf2_A 653 RVAILKANLRKSPVA-KD--VDLEFLAKMTNGF 682 (806)
T ss_dssp HHHTTTTTSSCC--C-CC---------------
T ss_pred HHHHHHHHhcCCCCC-CC--CCHHHHHHhCCCC
Confidence 777776655433111 11 1234566666664
No 254
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.76 E-value=0.0047 Score=52.49 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH----------hcccccccChhHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER----------LKVNAKELNNDLRADII 72 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----------l~~~~~~~~~~~~~~~l 72 (424)
+|.|.|++|+||+|.|+.+++.+. +.+++.+ +++++-... .-....-.+.+.....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istG------dllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTG------DILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHH------HHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHH------HHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 577899999999999999999872 3444432 233221111 10111233444556677
Q ss_pred HHHhccCcEEEEEcCCCCc
Q 037045 73 SKELNDRSYVLFLDGVSSE 91 (424)
Q Consensus 73 ~~~l~~~~~LlvlD~~~~~ 91 (424)
.+.+..... +|||++-..
T Consensus 69 ~~~l~~~~~-~ilDGfPRt 86 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRT 86 (206)
T ss_dssp HHHCCSSSC-EEEESCCCS
T ss_pred HHhhccCCc-eEecCCchh
Confidence 777766554 688997543
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.76 E-value=0.00082 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|.+|+|.|++|+||||+++.+++...
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999874
No 256
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.71 E-value=0.0079 Score=54.85 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER 55 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 55 (424)
.++.|.|.+|+||||+|.+++....... ..++|++.- .+.+++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3789999999999999999997764322 568887755 4566666666554
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.67 E-value=0.0011 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999987
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.65 E-value=0.0011 Score=58.39 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|++|+|.|++|+||||||+.++...
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcC
Confidence 5789999999999999999999876
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0061 Score=57.84 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|.+.|++|+||||++.+++....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998874
No 260
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.60 E-value=0.0061 Score=56.43 Aligned_cols=89 Identities=15% Similarity=0.252 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCC---CC-ceEEEEEeccCCCHHHHHHHHHHHhcccc----------cc---cC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESR---RF-DIIFWENINTDGNIRDIQEIILERLKVNA----------KE---LN 64 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~---~~ 64 (424)
+++.|+|++|+|||||+..++....... .. ..++|++.........+. .+++..+... .. ..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~-~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH-HHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHH-HHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 4789999999999999999998762111 11 246898876554333332 2333332211 10 11
Q ss_pred hhHHHHHHHHHhc------cCcEEEEEcCCCCc
Q 037045 65 NDLRADIISKELN------DRSYVLFLDGVSSE 91 (424)
Q Consensus 65 ~~~~~~~l~~~l~------~~~~LlvlD~~~~~ 91 (424)
..+....+...+. .+.-+||+|.+...
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 2223344444443 24568899987654
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.0014 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|++|+||||+++.+++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999887
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.0012 Score=55.19 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.|+|.||+|+|||||++++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999999876
No 263
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.57 E-value=0.0014 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|.+|+|.|+.|+||||+++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999976
No 264
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.55 E-value=0.0013 Score=54.41 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|+.|.|.|++|+||||+|+.+++..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999887
No 265
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.0013 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+|+.++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 266
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.53 E-value=0.006 Score=55.23 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++|+|.|++|+||||++..++..... .-..+.+++...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~ 142 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADT 142 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 58999999999999999999988742 223466666543
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.52 E-value=0.0016 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.|.|.|++|+||||+|+.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999987
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.52 E-value=0.011 Score=53.27 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++++|.|++|+||||++..++.....+.. ..+..++...
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~ 144 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDT 144 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCc
Confidence 48999999999999999999988742122 2456666544
No 269
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.51 E-value=0.0053 Score=63.32 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
.+.++|++|+|||++|+.+++.. . ...+.++++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhh
Confidence 58899999999999999999987 2 23455665554
No 270
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.51 E-value=0.008 Score=57.44 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcc---------cc-----cccCh--
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKV---------NA-----KELNN-- 65 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~---------~~-----~~~~~-- 65 (424)
-++|.|.+|+|||+|+.++.+... +.+.+.++++-++.. ....++.+++...=.. .. ...+.
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~ 245 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 245 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred eEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence 478999999999999999999753 345577888888774 4566777777654211 11 11111
Q ss_pred ----hHHHHHHHHHhcc---CcEEEEEcCCCC
Q 037045 66 ----DLRADIISKELND---RSYVLFLDGVSS 90 (424)
Q Consensus 66 ----~~~~~~l~~~l~~---~~~LlvlD~~~~ 90 (424)
....-.+.+++++ +.+|+++||+..
T Consensus 246 R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1122344555554 689999999754
No 271
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.49 E-value=0.01 Score=56.48 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcc--------cc---cccCh--h--
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKV--------NA---KELNN--D-- 66 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~--------~~---~~~~~--~-- 66 (424)
-++|.|.+|+|||+|+.+++.... +.+.+.++++-++.. ....++.+++...=.. .. ...++ .
T Consensus 155 r~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r 233 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGAR 233 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHH
T ss_pred eeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHH
Confidence 478999999999999999998753 344567788877764 4566777777665222 11 11111 1
Q ss_pred ----HHHHHHHHHhc---cCcEEEEEcCCCC
Q 037045 67 ----LRADIISKELN---DRSYVLFLDGVSS 90 (424)
Q Consensus 67 ----~~~~~l~~~l~---~~~~LlvlD~~~~ 90 (424)
...-.+.++++ ++++|+++|++..
T Consensus 234 ~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 234 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11123334443 5799999999754
No 272
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.49 E-value=0.0059 Score=68.04 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+.|.|+|++|+|||+||.+++.... .+-..+.|+++....+... ++.++... ...+.++....+++.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 5789999999999999999998873 4445688888887766655 34444221 222334455555554
Q ss_pred hcc-CcEEEEEcCCC
Q 037045 76 LND-RSYVLFLDGVS 89 (424)
Q Consensus 76 l~~-~~~LlvlD~~~ 89 (424)
.+. +..+||+|.+.
T Consensus 1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHTCCSEEEESCGG
T ss_pred HhcCCCCEEEEcChh
Confidence 443 56799999985
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0016 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++++|.|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999865
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.45 E-value=0.0018 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+ +..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 544
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.44 E-value=0.0082 Score=54.14 Aligned_cols=88 Identities=14% Similarity=0.033 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc----cccChhHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA----KELNNDLRADIISKEL 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l 76 (424)
+++++.|.+|+||||++..++.... ..-..+.+++...... ..+.++......+... ...+..+......+.+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998874 2233466777654332 2222333444444332 1122233333333334
Q ss_pred ccCcE-EEEEcCCCCc
Q 037045 77 NDRSY-VLFLDGVSSE 91 (424)
Q Consensus 77 ~~~~~-LlvlD~~~~~ 91 (424)
+..++ ++|+|-.-..
T Consensus 177 ~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHTTCSEEEEECCCSC
T ss_pred HhCCCCEEEEeCCCCc
Confidence 32334 7888875433
No 276
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.44 E-value=0.0041 Score=65.00 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
.+.|+|++|+|||++|+.+++... ..-...+.++++..
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhc
Confidence 688999999999999999999873 22233556665554
No 277
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.43 E-value=0.0018 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999976
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.42 E-value=0.008 Score=57.28 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHH--hcccc-----cccChhHH------
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILER--LKVNA-----KELNNDLR------ 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~--l~~~~-----~~~~~~~~------ 68 (424)
.++|+|++|+|||||++.+...... ...+.++++.++... ...++.+++... +.... ...+....
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 5789999999999999999887631 222455666666643 344555555432 11110 11111111
Q ss_pred HHHHHHHh---ccCcEEEEEcCCCC
Q 037045 69 ADIISKEL---NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 ~~~l~~~l---~~~~~LlvlD~~~~ 90 (424)
.-.+.+.+ +++++|+++|++..
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11223333 46899999999864
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.41 E-value=0.0019 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999998
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.40 E-value=0.0085 Score=56.82 Aligned_cols=38 Identities=24% Similarity=0.079 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++|++.|++|+||||++..++..... .-..+..++...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCc
Confidence 58999999999999999999988842 222355555443
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.40 E-value=0.0018 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
|.+|+|.|+.|+||||+++.++.
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH
Confidence 56899999999999999999988
No 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.40 E-value=0.014 Score=55.52 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
++|++.|.+|+||||++.+++....... -..+.-+++...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~ 140 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVY 140 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence 5899999999999999999998885321 234666666543
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.39 E-value=0.0018 Score=53.26 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 284
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.33 E-value=0.015 Score=55.04 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++++|.|++|+||||++..++.... ..-..+..++...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 4789999999999999999999884 3333456666543
No 285
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.33 E-value=0.011 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.|+|-|+.|+||||.++.+++...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999985
No 286
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.32 E-value=0.0024 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+||||+++.+++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999773
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.26 E-value=0.0021 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|++|+||||+++.++..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 478999999999999999998753
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.26 E-value=0.0025 Score=54.32 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|++|+|||||++.++...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999876
No 289
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.26 E-value=0.015 Score=55.71 Aligned_cols=51 Identities=8% Similarity=-0.085 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER 55 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 55 (424)
.++.|.|.+|+||||+|.+++...... .-..++|++.. .+.+++...++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 368899999999999999999887422 22357777654 4556666666543
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.25 E-value=0.0027 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+||||+++.++....
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998873
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.24 E-value=0.0032 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
|++++|.|..|+|||||+.++.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 57899999999999999999999874
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.24 E-value=0.0024 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|.|.|++|+||||+++.+++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.23 E-value=0.0031 Score=58.28 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=47.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhcccccccChhHHH------HHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKVNAKELNNDLRA------DIIS 73 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~------~~l~ 73 (424)
..++|+|++|+|||||++.++..... .+-+. ++++-++.. ....++.+.+-..+-......+..... -.+.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 35899999999999999998876532 22232 456666653 233333333210000000111111111 1112
Q ss_pred HHh--ccCcEEEEEcCCCCc
Q 037045 74 KEL--NDRSYVLFLDGVSSE 91 (424)
Q Consensus 74 ~~l--~~~~~LlvlD~~~~~ 91 (424)
+.+ +++.+|+++|++...
T Consensus 254 Eyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHTSCEEEEEEECHHHH
T ss_pred HHHHhcCCCEEEEEeCchHH
Confidence 222 478999999998653
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.23 E-value=0.0022 Score=53.54 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999876
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.22 E-value=0.013 Score=53.70 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=36.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERL 56 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 56 (424)
.++.|.|.+|+||||+|..++..... .-..++|++. ..+.+++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 36889999999999999999988743 2245777665 345666666665443
No 296
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.21 E-value=0.0029 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.+|+|.|+.|+||||+++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.21 E-value=0.0028 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999865
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.21 E-value=0.003 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.++...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999876
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.20 E-value=0.0025 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|++|+||||+++.+.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999999876
No 300
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.20 E-value=0.016 Score=54.66 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=76.5
Q ss_pred CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCC-hhhhccCC
Q 037045 281 MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLP-AEIGRLQK 358 (424)
Q Consensus 281 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp-~~~~~l~~ 358 (424)
+..|.+|+.+.+..+. ..+....+..+..|+.+.+.. .+..++ ..|.++.+|+.+.+ ..+ +..+. ..+..|.+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l--p~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI--PEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC--CTT-CCEECTTTTTTCTT
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe--CCc-ccEehHhHhhCCCC
Confidence 3677888888887543 345556677788899988864 455554 45778889999988 543 45554 36788899
Q ss_pred CCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045 359 LEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE 391 (424)
Q Consensus 359 L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~ 391 (424)
|+.+.+..+ ++.++.. |.++++|+.+.+.++.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 999998654 7777665 8899999999988763
No 301
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.17 E-value=0.02 Score=55.81 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER 55 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 55 (424)
.++.|.|.+|+||||+|.+++...... +-..++|++... +.+++...++..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 368899999999999999999887422 123578877643 456666665443
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.15 E-value=0.01 Score=65.31 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
++|-|+|+.|+||||||.++.... +..-..++|++.....++.. ++.++... .+..-++....+...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~--~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence 689999999999999999999877 45556789999888777664 66666554 344446677777777
Q ss_pred hccCc-EEEEEcCCCC
Q 037045 76 LNDRS-YVLFLDGVSS 90 (424)
Q Consensus 76 l~~~~-~LlvlD~~~~ 90 (424)
++... -++|+|-+--
T Consensus 1505 ~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1505 ARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHTCCSEEEESCSTT
T ss_pred HHcCCCCEEEEccHHh
Confidence 77654 4999998744
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.003 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999876
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.14 E-value=0.0034 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|++|+|||||++.+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 578999999999999999999876
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.13 E-value=0.012 Score=65.68 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|+|++|+||||||.+++.... ..-..++|++.....+... ++.++... ...+.++....++..
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 4789999999999999999998874 2334689998877666432 45555432 334555555555544
Q ss_pred hcc-CcEEEEEcCCCCc
Q 037045 76 LND-RSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~~ 91 (424)
.+. ..-++|+|.+...
T Consensus 457 v~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHTCCSEEEESCGGGC
T ss_pred HHhcCCcEEEECCHHHh
Confidence 433 4559999998654
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.11 E-value=0.009 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+||||+|+.+++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999874
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.11 E-value=0.0035 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.++...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998865
No 308
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.10 E-value=0.0075 Score=57.05 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=54.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccC-CCCc-eEEEEEeccC-CCHHHHHHHHHHH--hcccc-----cccChhHH-----
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGES-RRFD-IIFWENINTD-GNIRDIQEIILER--LKVNA-----KELNNDLR----- 68 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~-----~~~~~~~~----- 68 (424)
++|.|.+|+|||+|+.++++..... ++-+ .++++-++.. ....++.+++... +.... ...+....
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 5799999999999999999987431 1222 5778877764 4566777776553 22211 11111111
Q ss_pred -HHHHHHHhc---cCcEEEEEcCCCC
Q 037045 69 -ADIISKELN---DRSYVLFLDGVSS 90 (424)
Q Consensus 69 -~~~l~~~l~---~~~~LlvlD~~~~ 90 (424)
.-.+.++++ ++++|+++||+..
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 123444554 5799999999754
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.08 E-value=0.0037 Score=52.83 Aligned_cols=24 Identities=42% Similarity=0.840 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999873
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0034 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 311
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.07 E-value=0.0031 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999976
No 312
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.07 E-value=0.022 Score=51.32 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHH-HHHHHHHHHhccccc----ccChhHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIR-DIQEIILERLKVNAK----ELNNDLRADIISKEL 76 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 76 (424)
++++|.|.+|+||||++..++.... ..-..+.+++........ ..+.......+.... ..+..+......+.+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998874 222346666654432211 122233444443331 122223322222222
Q ss_pred -ccCcEEEEEcCC
Q 037045 77 -NDRSYVLFLDGV 88 (424)
Q Consensus 77 -~~~~~LlvlD~~ 88 (424)
....=++|+|-.
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 234447888976
No 313
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.06 E-value=0.0029 Score=52.53 Aligned_cols=24 Identities=46% Similarity=0.715 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|+.|+||||+|+.+++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0039 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+|+.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.05 E-value=0.0039 Score=55.21 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.+|.|.|++|+||||+|+.+++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999875
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.05 E-value=0.0038 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+|+.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999877
No 317
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.05 E-value=0.013 Score=64.57 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE 75 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 75 (424)
+++.|+|++|+||||||.+++.... ..-..++|++.....+... ++.++... ...+.++....++..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 4789999999999999999998874 2334689998877766532 45555432 333445555555544
Q ss_pred hcc-CcEEEEEcCCCCc
Q 037045 76 LND-RSYVLFLDGVSSE 91 (424)
Q Consensus 76 l~~-~~~LlvlD~~~~~ 91 (424)
.+. ..-++|+|.+...
T Consensus 457 v~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHhcCCCEEEECCHHHh
Confidence 433 4559999998764
No 318
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.04 E-value=0.0037 Score=52.59 Aligned_cols=24 Identities=42% Similarity=0.409 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 319
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.04 E-value=0.0033 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+|||||++.++....
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999998774
No 320
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.02 E-value=0.0038 Score=52.16 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 321
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.02 E-value=0.004 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+|+.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.02 E-value=0.0038 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998866
No 323
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0035 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++++|.|++|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998865
No 324
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.00 E-value=0.011 Score=46.16 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=27.7
Q ss_pred EEEccCCCCC--cCChhhhcccccceeeecccccccccCChh-hhccCCCCEEEecCCcC
Q 037045 313 LLDLHETNIG--CLPPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKV 369 (424)
Q Consensus 313 ~L~l~~~~~~--~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i 369 (424)
.++.+++.+. .+|..+ ..+|+.|++ ++|.+..+|.. +..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~L--s~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVL--TGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEEC--TTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEEC--CCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 555322 234555666 55555555542 34455566666655554
No 325
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.99 E-value=0.0044 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|+.|+||||+++.+++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.99 E-value=0.0043 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
..|+|+|+.|+||||+++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999987
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.96 E-value=0.0044 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.95 E-value=0.0047 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.+++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.93 E-value=0.0049 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+||.|.|++|+||+|.|+.+++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999987
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.93 E-value=0.01 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.93 E-value=0.018 Score=49.49 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccC---C-CCceEEEEEeccCCCH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGES---R-RFDIIFWENINTDGNI 45 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~ 45 (424)
.+++|.|++|+|||||++.++...... . ....++|++.......
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 478999999999999999998754211 1 2345888876544333
No 332
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.92 E-value=0.072 Score=61.58 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV 82 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 82 (424)
-+.++|++|+|||++|+.+.... ..+ ..+.+.++...+...+.+.+-..+.........- ..-.-.+++++
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~-----~~P~~~gk~~V 1339 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT-----LLPKSDIKNLV 1339 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE-----EEEBSSSSCEE
T ss_pred eEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc-----ccCCCCCceEE
Confidence 47899999999999998887654 122 3556777777777776666655543221000000 00000357899
Q ss_pred EEEcCCCCcc-----------hhhhh----ccCCCCC-------CcEEEEEecchh------hhc---ccCceEEecCCC
Q 037045 83 LFLDGVSSEI-----------NFKEI----GMHDDHG-------RGKVVFACRSRE------FCW---QADGVIHVQQLC 131 (424)
Q Consensus 83 lvlD~~~~~~-----------~~~~~----~~~~~~~-------~~~iiittr~~~------~~~---~~~~~~~l~~l~ 131 (424)
+.+||+.-.. .+.++ ++..... +..+|-++.... +.+ .....+.++..+
T Consensus 1340 lFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~ 1419 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPS 1419 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCT
T ss_pred EEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCC
Confidence 9999964321 11111 1111111 223444443331 111 455778888888
Q ss_pred HHHHHHHHHHHhc
Q 037045 132 QREAKKLFWEVVG 144 (424)
Q Consensus 132 ~~~~~~l~~~~~~ 144 (424)
.++-.++|.....
T Consensus 1420 ~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1420 GKSLSQIYEIYYK 1432 (2695)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776653
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.003 Score=51.92 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN 38 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 38 (424)
+++++|+|++|+|||||++.+.........-.+.+.++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 47899999999999999999998875332223444443
No 334
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.91 E-value=0.0046 Score=51.22 Aligned_cols=24 Identities=46% Similarity=0.722 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.++|.|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0046 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999876
No 336
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.91 E-value=0.021 Score=53.34 Aligned_cols=123 Identities=10% Similarity=0.102 Sum_probs=81.4
Q ss_pred cceeEEEeeccCCCC-CCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSST-LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~ 340 (424)
.+++.+.+..+-... ...+..|.+|+.+.+..+ ++.+....+..+..|+.+.+..+ +..++ ..|..+.+|+.+.+
T Consensus 217 ~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l- 293 (379)
T 4h09_A 217 KNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM- 293 (379)
T ss_dssp SSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE-
T ss_pred cccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc-
Confidence 455555554432211 123366778888888755 66666666777788888887654 44444 34677888888888
Q ss_pred ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccc
Q 037045 341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRV 390 (424)
Q Consensus 341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n 390 (424)
..+.+..++. .+..|.+|+.+.+..+ ++.++.. |.++++|+.+.+..+
T Consensus 294 -~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 -DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp -CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred -cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6666776654 5778888888888643 6666554 778888888877543
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.90 E-value=0.0049 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 338
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.90 E-value=0.0057 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+++++|.|++|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 47899999999999999999998763
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.89 E-value=0.0051 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|++|+||||+|+.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999877
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.88 E-value=0.0043 Score=52.84 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+|||||++.++...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.87 E-value=0.0055 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999976
No 342
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.86 E-value=0.028 Score=51.36 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLK 57 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~ 57 (424)
.+++|.|+.|+||||+++.++..... .-..+.++..... ....+-++...+.++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 48999999999999999999988742 2223555543332 233334444455555
No 343
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.83 E-value=0.0043 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLH 22 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~ 22 (424)
.+++|.|++|+|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 478999999999999999643
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.82 E-value=0.0051 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.133 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+.+...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999763
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.81 E-value=0.0058 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|.|.|++|+||||+++.++....
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999874
No 346
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.79 E-value=0.033 Score=52.38 Aligned_cols=84 Identities=11% Similarity=0.139 Sum_probs=56.0
Q ss_pred hHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCC-hhhhccCCCCEEEecCCcCcccchh-hhc
Q 037045 302 TSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQCLPSE-IGQ 378 (424)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~ 378 (424)
...+..+.+|+.+.+..+ +..++ ..|..+.+|+.+++ ..+ +..++ ..+..|.+|+.+.+..+ ++.++.. |..
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l--p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL--PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC--CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEe--CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 333556677777777654 44443 44677788888887 433 55554 35777888888888665 6666554 778
Q ss_pred CCCCCEeeeccc
Q 037045 379 LIELKYLRVSRV 390 (424)
Q Consensus 379 l~~L~~l~l~~n 390 (424)
+++|+.+.+..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 888888888764
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.79 E-value=0.0057 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.78 E-value=0.0053 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998876
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.76 E-value=0.0062 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|+|+.|+||||+++.+.+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999874
No 350
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.74 E-value=0.006 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|++|+|||||++.++....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999998763
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.74 E-value=0.0051 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
..|.|.|++|+||||+++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 352
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.74 E-value=0.0048 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|++|+|||||++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998865
No 353
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.73 E-value=0.0053 Score=52.12 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+++.+....
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998864
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.72 E-value=0.0059 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+++...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999873
No 355
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.72 E-value=0.022 Score=54.81 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIIL 53 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 53 (424)
.++.|.|.+|+|||||+.+++...... .-..++|++... +...+...+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 378999999999999999999887421 123577776543 4456665554
No 356
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.69 E-value=0.006 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+|||||++.++...
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.69 E-value=0.0064 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.69 E-value=0.0063 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.256 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999876
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.68 E-value=0.0069 Score=53.26 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 360
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.68 E-value=0.0073 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
..|+|.|+.|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999987
No 361
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.66 E-value=0.0067 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|.|||||++.++.-.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999999999999876
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.65 E-value=0.0066 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.+|+|.|+.|+||||+++.+.+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999884
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.65 E-value=0.0071 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.+++..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999876
No 364
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.64 E-value=0.01 Score=53.93 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
|||+|+|-|||||||.+..++.... ..-..+.-+++..
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~aLA--~~GkkVllID~Dp 86 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDP 86 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESS
T ss_pred eEEEEECCCccCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 7999999999999999999998884 2223477777664
No 365
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.64 E-value=0.0032 Score=53.70 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998873
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.62 E-value=0.0064 Score=54.62 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+|+.+.+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.60 E-value=0.0018 Score=60.03 Aligned_cols=111 Identities=8% Similarity=0.070 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY 81 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (424)
.+++|.|+.|+||||+.+.++....... -..++.+.-........ -...+...............+...|...+=
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~----~~~~v~q~~~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHES----KKCLVNQREVHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCC----SSSEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhc----cccceeeeeeccccCCHHHHHHHHhhhCcC
Confidence 3789999999999999999987663211 12222222111100000 000000000111112334567778888888
Q ss_pred EEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhh
Q 037045 82 VLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFC 118 (424)
Q Consensus 82 LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~ 118 (424)
++++|+..+.+.++.+ ......|..+++|+......
T Consensus 199 villDEp~d~e~~~~~-~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMRDLETIRLA-LTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCCSHHHHHHH-HHHHHTTCEEEEEESCSSHH
T ss_pred EEecCCCCCHHHHHHH-HHHHhcCCEEEEEEccChHH
Confidence 9999999876554443 11123356688888765543
No 368
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.60 E-value=0.014 Score=51.76 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
|++|+|.|-||+||||+|..++.... ..-..++-|+...
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~ 39 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDP 39 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCC
Confidence 68899999999999999999999884 2223567777654
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.59 E-value=0.0068 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+++.+....
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999876
No 370
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.57 E-value=0.053 Score=50.59 Aligned_cols=104 Identities=10% Similarity=0.128 Sum_probs=78.1
Q ss_pred cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCCh-hhhccCCC
Q 037045 282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKL 359 (424)
Q Consensus 282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L 359 (424)
..+.+|+.+.+..+ ++.+....+..+..|+.+.+..+ +..+. ..+....+|+.+.+ ..+ +..++. .+..|.+|
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l--~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF--YAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE--CCC-CSEECTTTTTTCTTC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc--ccc-ceecccccccccccc
Confidence 56777888877644 55555665777889999988765 44443 45677888999988 443 455554 57889999
Q ss_pred CEEEecCCcCcccchh-hhcCCCCCEeeeccc
Q 037045 360 EILDVSHTKVQCLPSE-IGQLIELKYLRVSRV 390 (424)
Q Consensus 360 ~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n 390 (424)
+.+.+.++.++.++.. |.++.+|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9999998888888766 889999999998654
No 371
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.55 E-value=0.031 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+|+.+++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999866
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.54 E-value=0.0079 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|++|+||||||+.+.....
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999988774
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.52 E-value=0.0083 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 374
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.52 E-value=0.017 Score=55.01 Aligned_cols=86 Identities=7% Similarity=0.033 Sum_probs=54.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccCCC--CceEEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhH------
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGESRR--FDIIFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDL------ 67 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~------ 67 (424)
++|.|.+|+|||+|+.+++++....+. -+.++++-++.. ....++.+++...=... . ...+...
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~ 234 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR 234 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998853221 246778877764 45667777776542111 1 1111111
Q ss_pred HHHHHHHHhc---cCcEEEEEcCCC
Q 037045 68 RADIISKELN---DRSYVLFLDGVS 89 (424)
Q Consensus 68 ~~~~l~~~l~---~~~~LlvlD~~~ 89 (424)
..-.+.+.++ ++.+|+++|++.
T Consensus 235 ~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 235 MALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 1123344444 589999999964
No 375
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.51 E-value=0.026 Score=43.88 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=31.1
Q ss_pred EEEeeccCCC--CCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC
Q 037045 267 RLSLFGFPSS--TLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI 321 (424)
Q Consensus 267 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 321 (424)
.++.+++.++ .+|.. --.+|+.|+|++|.++.++...+..+++|+.|++++|-+
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555666655 44421 112466666666666666666566666666666666643
No 376
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.51 E-value=0.0086 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|+.|+||||+++.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.50 E-value=0.04 Score=50.03 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
+|+|.|+.|+||||+++.+.........-..+..+....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 899999999999999999988773111112355555444
No 378
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.47 E-value=0.0077 Score=54.75 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
.+|+|.|+.|+|||||++.++.-......-..+.++.-..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 4799999999999999999998774321112355655433
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.47 E-value=0.0095 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+.....
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3789999999999999999998763
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.46 E-value=0.0086 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|+.|+||||||..+++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 79999999999999999999987
No 381
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.46 E-value=0.039 Score=52.74 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE 54 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 54 (424)
.++.|.|.+|+||||+|.+++...... -..++|++.-. +.+++...+..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 368899999999999999999887433 23577776543 33444444443
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.44 E-value=0.013 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|++|+||||+++.++....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4899999999999999999998874
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.44 E-value=0.0094 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+.....
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998763
No 384
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.43 E-value=0.0054 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=15.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHH-Hhh
Q 037045 2 KKICIWGPLGVGKTTIMENLH-HSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~-~~~ 25 (424)
.+++|.|+.|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999999 654
No 385
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.43 E-value=0.011 Score=51.44 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
.++.|.|++|+|||||+.+++.... ..-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 4789999999999999998887663 2234578877544
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.40 E-value=0.01 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|++|+||||+++.+++..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999877
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.39 E-value=0.0098 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
..|+|.|++|+||||+|+.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 388
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.39 E-value=0.014 Score=49.21 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=33.8
Q ss_pred CcEEEEE-cCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHH
Q 037045 1 MKKICIW-GPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRD 47 (424)
Q Consensus 1 ~~vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 47 (424)
|++|+|+ +-||+||||+|..++.... ..-..++-++.....+...
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCCCHHH
Confidence 6899998 6688999999999999884 2334577788776544443
No 389
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.39 E-value=0.0088 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
.+++|.|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.37 E-value=0.011 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
..|.|.|+.|+||||+|+.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 391
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.37 E-value=0.01 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999877
No 392
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.35 E-value=0.0095 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998763
No 393
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.33 E-value=0.01 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|+.|+||||||..+++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 478999999999999999999876
No 394
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.33 E-value=0.017 Score=54.65 Aligned_cols=87 Identities=10% Similarity=0.132 Sum_probs=53.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccC--------CCCc-eEEEEEeccC-CCHHHHHHHHHHH--hcccc-----cccChh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSIGES--------RRFD-IIFWENINTD-GNIRDIQEIILER--LKVNA-----KELNND 66 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~-----~~~~~~ 66 (424)
++|.|.+|+|||+|+.++++..... ++-+ .++++-++.. ....++.+++... +.... ...+..
T Consensus 150 ~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~ 229 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTI 229 (464)
T ss_dssp CCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHH
Confidence 5799999999999999999887532 1233 5778777764 4566677765442 21111 111111
Q ss_pred HH------HHHHHHHhc---cCcEEEEEcCCCC
Q 037045 67 LR------ADIISKELN---DRSYVLFLDGVSS 90 (424)
Q Consensus 67 ~~------~~~l~~~l~---~~~~LlvlD~~~~ 90 (424)
.. .-.+.++++ ++.+|+++||+..
T Consensus 230 ~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 230 ERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11 123444554 5799999999754
No 395
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.30 E-value=0.01 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|+.|+||||||..+++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999999976
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.29 E-value=0.01 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.29 E-value=0.023 Score=49.04 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|.|+.|+||||+++.+++...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3789999999999999999999984
No 398
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.29 E-value=0.048 Score=51.26 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=83.4
Q ss_pred cceeEEEeeccCCCC-CCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSST-LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~ 340 (424)
..|+.+.+..+.... -..+..|.+|+.+.+. +.++.++...|..+.+|+.+++..+ +..+. ..|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i- 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI- 341 (394)
T ss_dssp SSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE-
T ss_pred ccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE-
Confidence 567777776544332 1234788999999996 5678888888999999999999865 55554 56888999999999
Q ss_pred ccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045 341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE 391 (424)
Q Consensus 341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~ 391 (424)
..+ +..++. .+.+|.+|+.+.+.++... . ..+.....|+.+.+..+.
T Consensus 342 -p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 342 -PSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp -CTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred -Ccc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 544 556654 6889999999999887532 1 235667788888777653
No 399
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.25 E-value=0.025 Score=51.26 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
.+|+|.|+.|+|||||++.+.........-..+.+++...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 4899999999999999999998762101112255555444
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.22 E-value=0.011 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999977
No 401
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.19 E-value=0.018 Score=51.69 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
|++|+|.|-||+||||+|..++..... .-..+.-|++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~--~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 678999999999999999999988842 2234667776543
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.18 E-value=0.011 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHH 23 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~ 23 (424)
.+|+|.|+.|+||||+|+.+..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 403
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.17 E-value=0.01 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999988655
No 404
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.16 E-value=0.013 Score=47.08 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|+.|+|.|.+|+|||||+..+....
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5679999999999999999998754
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.16 E-value=0.029 Score=50.51 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE 54 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 54 (424)
.+++|.|++|+|||||++.++....... -..++|+.... +...+.+.+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 3789999999999999999998774221 11466766432 34444444443
No 406
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.12 E-value=0.011 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|+.|+|||||+..+++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 379999999999999999999876
No 407
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.12 E-value=0.013 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|+.|+||||||..+++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478999999999999999999876
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.11 E-value=0.012 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999977
No 409
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.10 E-value=0.012 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998654
No 410
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.09 E-value=0.0089 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+|+.+....
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999876
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.08 E-value=0.011 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999988654
No 412
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.07 E-value=0.01 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.+++|.|+.|+|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 413
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.06 E-value=0.0073 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999865
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.01 E-value=0.016 Score=52.34 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|+.|+||||+++.++....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998874
No 415
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.01 E-value=0.012 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-+.|+|++|+||||+|..+++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999887
No 416
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.98 E-value=0.015 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|.+|+|||||+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999886
No 417
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.98 E-value=0.037 Score=46.83 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+.|+|-|+.|+||||+++.+++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999983
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.97 E-value=0.023 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.++.|.|++|+|||||+..++....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999997653
No 419
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.96 E-value=0.04 Score=46.89 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|++-|+.|+||||+++.+++...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999885
No 420
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.95 E-value=0.013 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+.|.|.|++|+||||||..++++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999999876
No 421
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.94 E-value=0.013 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998765
No 422
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.93 E-value=0.013 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998654
No 423
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.93 E-value=0.048 Score=46.46 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCce
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDI 33 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 33 (424)
.+|+|.|+.|+||||+++.+++.... ..+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v 37 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV 37 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence 37899999999999999999998852 33443
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.92 E-value=0.023 Score=51.43 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
+++|+|+|-||+||||+|..++..... .-..++-|++...
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~~VlliD~D~~ 80 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIGCDPK 80 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEESSS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 368899999999999999999998842 2235777776653
No 425
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.90 E-value=0.02 Score=52.23 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++|+|.|++|+||||++..++..... .-..+.+++...
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 58999999999999999999988742 223466666544
No 426
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.89 E-value=0.039 Score=47.78 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEE
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWE 37 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 37 (424)
.+|+|.|+.|+||||+++.+++.... ..+..+...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 37899999999999999999998853 344433333
No 427
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.89 E-value=0.12 Score=49.99 Aligned_cols=38 Identities=24% Similarity=0.091 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT 41 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 41 (424)
++|+|+|.+|+||||++.+++...... . ..+.-|+...
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~-G-~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK-G-WKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-C-CeEEEEeccc
Confidence 489999999999999999999887422 2 2345555433
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.88 E-value=0.014 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++--.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998654
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.88 E-value=0.015 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999999999999853
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.87 E-value=0.012 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998755
No 431
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.017 Score=49.35 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++|+|.|.+|+|||||+..++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999886
No 432
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.84 E-value=0.078 Score=50.89 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|++|+|||||++.++....
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhh
Confidence 4899999999999999999998774
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.83 E-value=0.016 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.+++|.|+.|+|||||.+.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999884
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.83 E-value=0.014 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998654
No 435
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.81 E-value=0.015 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998765
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.81 E-value=0.015 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 437
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.80 E-value=0.015 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 478999999999999999998654
No 438
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.80 E-value=0.015 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++--.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999998754
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.77 E-value=0.041 Score=47.31 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+|+|-|+.|+||||+++.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999884
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.76 E-value=0.017 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.+++|.|+.|+|||||++.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999885
No 441
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.74 E-value=0.038 Score=47.18 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD 42 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 42 (424)
.|.+.|.||+||||+|..++..... ..++ +..+++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVR-VMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCC-EEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCC-EEEEEeCCC
Confidence 3788999999999999999988742 2333 445555543
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.73 E-value=0.016 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++--.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998765
No 443
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.71 E-value=0.016 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998654
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.70 E-value=0.016 Score=50.91 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998654
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.65 E-value=0.019 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|..|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 446
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.65 E-value=0.02 Score=50.55 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc-ccccChhHHHHHHHHHhccCc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN-AKELNNDLRADIISKELNDRS 80 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~~~l~~~~ 80 (424)
.+++|.|+.|+||||+++.++.... ..+.+.+++.-...... .+.- ..+-.+ .-..+.......+...+...+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~---~~~~-~~~v~q~~~gl~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV---FKHK-KSIVNQREVGEDTKSFADALRAALREDP 99 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC---CCCS-SSEEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee---cCCc-ceeeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence 4789999999999999999988663 11123232221110000 0000 000000 000011223445556666666
Q ss_pred EEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045 81 YVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF 117 (424)
Q Consensus 81 ~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~ 117 (424)
=++++|+..+....... +.....|.-|++||.....
T Consensus 100 ~illlDEp~D~~~~~~~-l~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 100 DVIFVGEMRDLETVETA-LRAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp SEEEESCCCSHHHHHHH-HHHHHTTCEEEEEECCSSH
T ss_pred CEEEeCCCCCHHHHHHH-HHHHccCCEEEEEeCcchH
Confidence 68888988754433322 1111235567777766543
No 447
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.64 E-value=0.071 Score=49.29 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEecc
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINT 41 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~ 41 (424)
-++|.|.+|+|||+|+.++++.... .+-+. ++++-++.
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDE 215 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSC
T ss_pred eEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEecc
Confidence 4789999999999999999887531 12232 45565554
No 448
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.62 E-value=0.018 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998765
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.62 E-value=0.023 Score=52.54 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.+++|.|+.|+||||+++.++....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 4899999999999999999998874
No 450
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.61 E-value=0.017 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++--.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998754
No 451
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.61 E-value=0.017 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||++.++--.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998755
No 452
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.61 E-value=0.019 Score=53.40 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-+.++|++|+|||++|+.+++..
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
No 453
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.58 E-value=0.02 Score=53.50 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++|+|.|+.|+||||||..+++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 579999999999999999999887
No 454
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.57 E-value=0.063 Score=51.88 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEII 52 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 52 (424)
-++|.|.+|+|||+|+.++++.. +-+.++++-++.. ....++.+++
T Consensus 229 r~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred eEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 47899999999999999998764 2357888888875 4566666665
No 455
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.53 E-value=0.019 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998765
No 456
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.52 E-value=0.019 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999988654
No 457
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.52 E-value=0.019 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998765
No 458
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.51 E-value=0.096 Score=50.02 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=49.9
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHhhccCCCCc-eEEEEEeccC-CCHHHHHHHHHHH--hcccc---c--ccChhHH----
Q 037045 3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFD-IIFWENINTD-GNIRDIQEIILER--LKVNA---K--ELNNDLR---- 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~---~--~~~~~~~---- 68 (424)
-++|.|..|+|||+|+ ..+.+.. ..+ .++++-++.. ....++.+++... +.... . ..+....
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 3689999999999996 5565542 234 4678888875 4566777776543 11111 1 1111111
Q ss_pred --HHHHHHHh--ccCcEEEEEcCCCC
Q 037045 69 --ADIISKEL--NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 --~~~l~~~l--~~~~~LlvlD~~~~ 90 (424)
...+-+++ +++.+|+++||+..
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11223333 46899999999754
No 459
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.49 E-value=0.021 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|+|+.|+|||||++.+..-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 478999999999999999998765
No 460
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.47 E-value=0.093 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.409 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
+.+.|.|+.|+||||++....-+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 46899999999999877655433
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.022 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.+++..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999987
No 462
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.43 E-value=0.054 Score=51.91 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=50.7
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhcc--cc---cccCh--hHH----
Q 037045 3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKV--NA---KELNN--DLR---- 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~--~~---~~~~~--~~~---- 68 (424)
-++|.|.+|+|||+|| .++++.. ..+. ++++-++.. ....++.+.+...=.. .. ...++ ...
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999996 4666654 3553 577778774 4566777777553211 11 11111 111
Q ss_pred --HHHHHHHh--ccCcEEEEEcCCCC
Q 037045 69 --ADIISKEL--NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 --~~~l~~~l--~~~~~LlvlD~~~~ 90 (424)
...+-+++ +++.+|+++||+..
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11233344 36899999999754
No 463
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.39 E-value=0.02 Score=47.35 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.|+|.|.+|+|||||++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 464
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.38 E-value=0.025 Score=45.82 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.|+|.|.+|+|||||.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 465
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.37 E-value=0.026 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|..|+|||||.+.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998763
No 466
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.34 E-value=0.023 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+.++|++|+|||++|+.+++..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999977
No 467
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.28 E-value=0.017 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.+|+|.|+.|+||||+++.++..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999875
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.26 E-value=0.026 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
++++|+|++|+|||||++.++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999999765
No 469
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.26 E-value=0.19 Score=47.15 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=75.9
Q ss_pred cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045 263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340 (424)
Q Consensus 263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~ 340 (424)
..++.+.+.... ..++ .+..|..++.+.+..+.. .+....+..+..++.+......+. ...+..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l- 304 (394)
T 4fs7_A 230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKL- 304 (394)
T ss_dssp CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEE-
T ss_pred CCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec--ccccccccccccccc-
Confidence 455666654432 2222 235667777777765533 333334566677777766554321 134667788888888
Q ss_pred ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccc
Q 037045 341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRV 390 (424)
Q Consensus 341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n 390 (424)
..+ +..++. .+..|.+|+.+++..+ ++.++.. |.++++|+.+.+..+
T Consensus 305 -~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 305 -LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp -CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred -ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 443 555544 5778899999998643 7777655 889999999988765
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.26 E-value=0.029 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.++...
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999876
No 471
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.24 E-value=0.072 Score=48.76 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDI 48 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 48 (424)
+++.+.|-||+||||+|..++.... ..-..++-++.....++.+.
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSCHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCCChhHH
Confidence 5788889999999999999999884 33345777777655444433
No 472
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.22 E-value=0.067 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
.++.+.|.+|+||||++..++....
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4788899999999999999998874
No 473
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.22 E-value=0.024 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.+++|.|+.|+|||||.+.++--
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999998864
No 474
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.19 E-value=0.094 Score=50.92 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHH
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEII 52 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 52 (424)
-++|.|.+|+|||+|+.++++.. +-+.++++-++.. ....++.+++
T Consensus 234 r~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 234 AAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred EEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 47899999999999999998875 2357888888875 4555666554
No 475
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.13 E-value=0.059 Score=46.89 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHH
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIR 46 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 46 (424)
|+ |+|.|-||+||||+|..++.... ..-..++-|+.....+..
T Consensus 1 mk-I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 1 MK-LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp CE-EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTTSCHH
T ss_pred CE-EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCcChH
Confidence 44 56699999999999999999985 333457777776654443
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.08 E-value=0.017 Score=50.98 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+|+|.|+.|+||||+++.+++..
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 477
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.07 E-value=0.089 Score=50.35 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=50.5
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH----
Q 037045 3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR---- 68 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 68 (424)
-++|.|.+|+|||+|| ..+++.. ..+. ++++-++.. ....++.+.+...=.... ...+....
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 3689999999999995 5666655 2453 577777774 456667776655321111 11111111
Q ss_pred --HHHHHHHh--ccCcEEEEEcCCCC
Q 037045 69 --ADIISKEL--NDRSYVLFLDGVSS 90 (424)
Q Consensus 69 --~~~l~~~l--~~~~~LlvlD~~~~ 90 (424)
...+-+++ +++.+|+++||+..
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 12333344 36899999999754
No 478
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.05 E-value=0.019 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 1 MKKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 1 ~~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+++++|.|+.|+|||||.+.+....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999754
No 479
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.05 E-value=0.027 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|++|+|||||.+.++--.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999998754
No 480
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.04 E-value=0.024 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|+|+.|+|||||++.++.-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 478999999999999999988655
No 481
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.97 E-value=0.035 Score=46.08 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIG 26 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~ 26 (424)
+++.|+|+.|+||||++.+++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877663
No 482
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.95 E-value=0.074 Score=48.98 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRD 47 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 47 (424)
+++.+.|-||+||||+|..++........-..+.-++.....++..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHH
Confidence 6889999999999999999998883103334577777765544333
No 483
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.95 E-value=0.034 Score=48.37 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII 52 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 52 (424)
.++.|.|.+|+|||++|.+++.... ...-..++|++... +.+.+.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccC--CHHHHHHHH
Confidence 3788999999999999999876531 12223466666543 444544443
No 484
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.94 E-value=0.033 Score=46.04 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 037045 3 KICIWGPLGVGKTTIMENLHHS 24 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~ 24 (424)
.|+|.|.+|+|||||++.++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.91 E-value=0.029 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-|++.|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 486
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.90 E-value=0.026 Score=51.64 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc---C
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND---R 79 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~ 79 (424)
-+.++|++|+|||+||+.+++.. ... ...+.+.......++. +........... .+.. .
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~--~~~---~~~i~~~~~~~~~~l~-------g~~~~~~~~~~~------~~~~g~l~ 109 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM--DLD---FHRIQFTPDLLPSDLI-------GTMIYNQHKGNF------EVKKGPVF 109 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT--TCC---EEEEECCTTCCHHHHH-------EEEEEETTTTEE------EEEECTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHh--CCC---eEEEecCCCCChhhcC-------CceeecCCCCce------EeccCccc
Confidence 37899999999999999999977 232 2334444333333322 111100000000 0111 1
Q ss_pred cEEEEEcCCCCcch--hhhh-------ccC------CCCCCcEEEEEecchh------hhc---cc-CceEEecCCCHHH
Q 037045 80 SYVLFLDGVSSEIN--FKEI-------GMH------DDHGRGKVVFACRSRE------FCW---QA-DGVIHVQQLCQRE 134 (424)
Q Consensus 80 ~~LlvlD~~~~~~~--~~~~-------~~~------~~~~~~~iiittr~~~------~~~---~~-~~~~~l~~l~~~~ 134 (424)
..++++|+++.... ...+ .+. .......++.|+.... +.. .. ...+.++..+.++
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~ 189 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKES 189 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHH
T ss_pred ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHH
Confidence 36899999987531 1111 000 1122344555555222 111 22 3358899999999
Q ss_pred HHHHHHHHhcc
Q 037045 135 AKKLFWEVVGV 145 (424)
Q Consensus 135 ~~~l~~~~~~~ 145 (424)
-.+++.+....
T Consensus 190 ~~~il~~~~~~ 200 (331)
T 2r44_A 190 ELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHhcccc
Confidence 99999887754
No 487
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.90 E-value=0.32 Score=57.01 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccc--cChhHHHHHHHHHh-ccC
Q 037045 3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKE--LNNDLRADIISKEL-NDR 79 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l-~~~ 79 (424)
-|.++|++|+|||++++.+..... .+ ..+.++++...+...++..+-..+...... ...- .-. .++
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~-------~p~~~Gk 1374 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVL-------RPTQLGK 1374 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEE-------EESSTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCccc-------CCCcCCc
Confidence 367999999999999988776552 22 356788888888877777775444221100 0000 000 267
Q ss_pred cEEEEEcCCCC
Q 037045 80 SYVLFLDGVSS 90 (424)
Q Consensus 80 ~~LlvlD~~~~ 90 (424)
++++.+||+.-
T Consensus 1375 ~~VlFiDDiNm 1385 (3245)
T 3vkg_A 1375 WLVVFCDEINL 1385 (3245)
T ss_dssp EEEEEETTTTC
T ss_pred eEEEEecccCC
Confidence 88999999853
No 488
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.89 E-value=0.033 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998654
No 489
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.89 E-value=0.028 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999998765
No 490
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.88 E-value=0.035 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-|+|.|.+|+|||||+..+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 491
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.85 E-value=0.031 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999765
No 492
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.78 E-value=0.036 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|++|+|||||.+.++--.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 378999999999999999998755
No 493
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.77 E-value=0.036 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999998654
No 494
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.77 E-value=0.036 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 478999999999999999988654
No 495
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.75 E-value=0.04 Score=44.25 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 037045 4 ICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 4 i~I~G~~G~GKTtLa~~~~~~~ 25 (424)
|+|.|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 496
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.74 E-value=0.036 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045 2 KKICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 2 ~vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.+++|.|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 378999999999999999998654
No 497
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.036 Score=46.07 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
.|+|.|.+|+|||||+..+....
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 498
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.73 E-value=0.097 Score=44.33 Aligned_cols=43 Identities=19% Similarity=0.050 Sum_probs=31.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHH
Q 037045 3 KICIW-GPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDI 48 (424)
Q Consensus 3 vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 48 (424)
+|+|. +-||+||||+|..++..... .- .+.-++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~--~g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLAL--QG-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHT--TS-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHh--cC-CEEEEECCCCCCHHHH
Confidence 56665 78899999999999998852 23 7888887776554433
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.72 E-value=0.037 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.565 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
+|+|.|+.|+||||+++.+.+..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998876
No 500
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.72 E-value=0.037 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 037045 3 KICIWGPLGVGKTTIMENLHHSI 25 (424)
Q Consensus 3 vi~I~G~~G~GKTtLa~~~~~~~ 25 (424)
-|+|.|.+|+|||||++.+....
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48899999999999999998654
Done!