Query 037046
Match_columns 91
No_of_seqs 35 out of 37
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 13:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wx4_A DCP1, decapping protein 49.3 7.8 0.00027 23.4 1.5 13 15-27 14-26 (46)
2 1pfi_A Major coat protein of P 37.7 39 0.0013 20.4 3.4 25 2-26 21-45 (46)
3 2wx3_A MRNA-decapping enzyme 1 34.7 18 0.00061 22.2 1.5 12 15-26 16-27 (51)
4 1b9u_A Protein (ATP synthase); 14.2 1E+02 0.0036 15.8 1.8 10 15-24 8-17 (34)
5 3ogl_Q JAZ1 incomplete degron 10.9 1.3E+02 0.0043 15.4 1.4 14 46-59 3-16 (21)
6 1xn7_A Hypothetical protein YH 10.8 1.1E+02 0.0038 18.7 1.4 12 51-62 31-42 (78)
7 2k02_A Ferrous iron transport 10.5 1.3E+02 0.0045 19.0 1.7 14 50-63 30-43 (87)
8 1c1y_B Proto-onkogene serine/t 10.4 1.4E+02 0.0046 19.2 1.8 10 1-10 22-31 (77)
9 2gf4_A Protein VNG1086C; HSR14 9.7 1.6E+02 0.0055 19.7 2.1 15 9-23 52-66 (100)
10 3tj1_A RNA polymerase I-specif 9.6 2.9E+02 0.01 23.5 4.0 24 11-34 494-517 (649)
No 1
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=49.29 E-value=7.8 Score=23.38 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcC
Q 037046 15 LVQVLVYLILSNS 27 (91)
Q Consensus 15 lVQaLVYLILs~S 27 (91)
++|||.|||=..+
T Consensus 14 l~qal~hLiknD~ 26 (46)
T 2wx4_A 14 FVQAFTYLIQNDK 26 (46)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCH
Confidence 6899999995544
No 2
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=37.69 E-value=39 Score=20.35 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc
Q 037046 2 SLADALIKVAMFVLVQVLVYLILSN 26 (91)
Q Consensus 2 sl~d~L~Kva~FvlVQaLVYLILs~ 26 (91)
+++..++-+.+..+|-+|+|-.|+|
T Consensus 21 si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556677778888999999988876
No 3
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=34.70 E-value=18 Score=22.18 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhc
Q 037046 15 LVQVLVYLILSN 26 (91)
Q Consensus 15 lVQaLVYLILs~ 26 (91)
++|||.|||=..
T Consensus 16 l~qaLihLIqnD 27 (51)
T 2wx3_A 16 LQDTLIHLIKND 27 (51)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 689999998543
No 4
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.21 E-value=1e+02 Score=15.76 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 037046 15 LVQVLVYLIL 24 (91)
Q Consensus 15 lVQaLVYLIL 24 (91)
+.|++.|+||
T Consensus 8 ~~~~i~Flil 17 (34)
T 1b9u_A 8 LGQAIAFVLF 17 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 5
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=10.93 E-value=1.3e+02 Score=15.43 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=10.8
Q ss_pred cchhhhhHHHHHHH
Q 037046 46 KTARSVSIRRMLAA 59 (91)
Q Consensus 46 rpaRS~SiRR~lA~ 59 (91)
.-+|-.|+.|+|.-
T Consensus 3 p~aRk~SLqRFleK 16 (21)
T 3ogl_Q 3 PIARRASLHRFLEK 16 (26)
T ss_pred chhHHHHHHHHHHH
Confidence 34788999999863
No 6
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=10.79 E-value=1.1e+02 Score=18.68 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=10.7
Q ss_pred hhHHHHHHHHhc
Q 037046 51 VSIRRMLAAISD 62 (91)
Q Consensus 51 ~SiRR~lA~LsD 62 (91)
+.|||+|+.|.+
T Consensus 31 ~TIRrdL~~Le~ 42 (78)
T 1xn7_A 31 PMINAMLQQLES 42 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 569999999988
No 7
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=10.48 E-value=1.3e+02 Score=19.01 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHhcC
Q 037046 50 SVSIRRMLAAISDL 63 (91)
Q Consensus 50 S~SiRR~lA~LsD~ 63 (91)
.+.|||+|+.|.+.
T Consensus 30 ~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 30 QPLIDAMLERMEAM 43 (87)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 35799999999884
No 8
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=10.35 E-value=1.4e+02 Score=19.24 Aligned_cols=10 Identities=60% Similarity=0.823 Sum_probs=7.4
Q ss_pred CcHHHHHHHH
Q 037046 1 MSLADALIKV 10 (91)
Q Consensus 1 ~sl~d~L~Kv 10 (91)
|++.|+|.|.
T Consensus 22 ~tlrdaL~Ka 31 (77)
T 1c1y_B 22 MSLHDCLMKA 31 (77)
T ss_dssp CBHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 5777888775
No 9
>2gf4_A Protein VNG1086C; HSR14, structural genomics, PSI, protein structure initiativ northeast structural genomics consortium, NESG, unknown FUN; 2.07A {Halobacterium SP} SCOP: a.8.10.1
Probab=9.74 E-value=1.6e+02 Score=19.74 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 037046 9 KVAMFVLVQVLVYLI 23 (91)
Q Consensus 9 Kva~FvlVQaLVYLI 23 (91)
|-|+|+|..+|.=.|
T Consensus 52 K~AIF~L~~~Ia~~~ 66 (100)
T 2gf4_A 52 KHAVFLLGNALAAAM 66 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999987543
No 10
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=9.55 E-value=2.9e+02 Score=23.50 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhcCCccccch
Q 037046 11 AMFVLVQVLVYLILSNSSDIFSEN 34 (91)
Q Consensus 11 a~FvlVQaLVYLILs~SS~VFS~~ 34 (91)
..|.+.||+.|++-.+-.++...+
T Consensus 494 ~FYs~cQA~fYIfCFR~rdL~~~~ 517 (649)
T 3tj1_A 494 HFYAAFQALCYIFCFRHNIFRDTD 517 (649)
T ss_dssp HHHHHHHHHHHHHHHHGGGGBCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 467899999999999888877533
Done!