Query 037046
Match_columns 91
No_of_seqs 35 out of 37
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 13:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037046.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037046hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gf4a1 a.8.10.1 (A:1-89) Nypo 17.9 32 0.0024 21.2 2.1 16 8-23 51-66 (89)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 15.4 79 0.0058 16.8 3.0 18 7-24 8-25 (36)
3 d1kifa2 d.16.1.3 (A:195-287) D 12.5 11 0.00078 21.1 -1.3 27 23-49 65-92 (93)
4 d2gnoa1 a.80.1.1 (A:209-306) g 11.1 67 0.0049 20.1 2.2 16 11-26 39-54 (98)
5 d1c0pa2 d.16.1.3 (A:1194-1288) 11.0 18 0.0013 20.3 -0.7 8 42-49 88-95 (95)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 9.1 1E+02 0.0075 17.7 2.4 18 8-25 35-52 (100)
7 d1f0xa1 d.58.32.2 (A:274-567) 7.6 65 0.0048 21.6 1.1 20 46-65 12-32 (294)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.1 1.4E+02 0.01 17.4 2.4 17 8-24 41-57 (107)
9 d2r9ga1 a.80.1.2 (A:238-423) U 6.4 1.3E+02 0.0095 19.9 2.1 17 13-29 78-94 (186)
10 d1f1ea_ a.22.1.2 (A:) Archaeal 6.0 99 0.0072 19.2 1.3 47 11-68 101-150 (151)
No 1
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c {Halobacterium salinarium [TaxId: 2242]}
Probab=17.87 E-value=32 Score=21.19 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037046 8 IKVAMFVLVQVLVYLI 23 (91)
Q Consensus 8 ~Kva~FvlVQaLVYLI 23 (91)
=|-|+|+|..+++=.+
T Consensus 51 Hk~AIF~L~~~Ia~~m 66 (89)
T d2gf4a1 51 HKHAVFLLGNALAAAM 66 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3789999999987554
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.35 E-value=79 Score=16.75 Aligned_cols=18 Identities=50% Similarity=0.779 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037046 7 LIKVAMFVLVQVLVYLIL 24 (91)
Q Consensus 7 L~Kva~FvlVQaLVYLIL 24 (91)
++--++|++|-...-+||
T Consensus 8 ~iAt~LFilvPt~FLliL 25 (36)
T d2axtm1 8 LIATALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455689999998777776
No 3
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=12.54 E-value=11 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=13.6
Q ss_pred HHhcCCccccchhhhhcc-ccCCccchh
Q 037046 23 ILSNSSDIFSENKKKKMM-KSSSFKTAR 49 (91)
Q Consensus 23 ILs~SS~VFS~~~~~~~~-rs~sFrpaR 49 (91)
|+..-..+|-.-+..... .-.||||+|
T Consensus 65 i~~~a~~~~P~l~~~~i~~~~~GlRP~r 92 (93)
T d1kifa2 65 IWEGCCRLEPTLKDAKIVGEYTGFRPVR 92 (93)
T ss_dssp HHHHHHHHSGGGGGCEEEEEEEEEEEEC
T ss_pred HHHHHHHHHhhhcCCCeeeEEEeecCCC
Confidence 344444455433322222 347899887
No 4
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=11.10 E-value=67 Score=20.09 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 037046 11 AMFVLVQVLVYLILSN 26 (91)
Q Consensus 11 a~FvlVQaLVYLILs~ 26 (91)
-+|.|+|-++-+||-.
T Consensus 39 daflliq~~~riilhe 54 (98)
T d2gnoa1 39 DAFLLIQRLTRIILHE 54 (98)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccc
Confidence 3699999999999964
No 5
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}
Probab=11.01 E-value=18 Score=20.25 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=6.3
Q ss_pred cCCccchh
Q 037046 42 SSSFKTAR 49 (91)
Q Consensus 42 s~sFrpaR 49 (91)
-.||||+|
T Consensus 88 ~~GlRP~R 95 (95)
T d1c0pa2 88 NVGLRPAR 95 (95)
T ss_dssp EEEEEEEE
T ss_pred EEEeCCCC
Confidence 35899987
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.13 E-value=1e+02 Score=17.67 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037046 8 IKVAMFVLVQVLVYLILS 25 (91)
Q Consensus 8 ~Kva~FvlVQaLVYLILs 25 (91)
+=+.+|++|+++...++.
T Consensus 35 i~~~I~~~V~~~l~~~~~ 52 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVW 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345678888887766664
No 7
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=7.59 E-value=65 Score=21.62 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=16.1
Q ss_pred cchhhhhHHH-HHHHHhcCCC
Q 037046 46 KTARSVSIRR-MLAAISDLPS 65 (91)
Q Consensus 46 rpaRS~SiRR-~lA~LsD~P~ 65 (91)
+|.+=..+|| +|....++|.
T Consensus 12 ~~~~l~~iR~~vL~~~~~LP~ 32 (294)
T d1f0xa1 12 QPEVLTEIRRHILANFENLPV 32 (294)
T ss_dssp CHHHHHHHHHHHHHHCSSCCS
T ss_pred CHHHHHHHHHHHHhccccCCc
Confidence 3567778886 9999999996
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.06 E-value=1.4e+02 Score=17.38 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037046 8 IKVAMFVLVQVLVYLIL 24 (91)
Q Consensus 8 ~Kva~FvlVQaLVYLIL 24 (91)
+=+++|++|+++...++
T Consensus 41 i~~~I~~~V~~~~~~~~ 57 (107)
T d3ehbb2 41 IITAVTIFVCLLLLICI 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34567778887765554
No 9
>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=6.35 E-value=1.3e+02 Score=19.95 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCc
Q 037046 13 FVLVQVLVYLILSNSSD 29 (91)
Q Consensus 13 FvlVQaLVYLILs~SS~ 29 (91)
..|.||.+||-++.=||
T Consensus 78 i~LaqaviyLA~apKSn 94 (186)
T d2r9ga1 78 IPLADVVVDLCLSPKSN 94 (186)
T ss_dssp HHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCCch
Confidence 45889999999986554
No 10
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=5.97 E-value=99 Score=19.24 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHH--hcCCccccchhhhhccccCCccchhhhhHHHHHHHHhc-CCCCCC
Q 037046 11 AMFVLVQVLVYLIL--SNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAISD-LPSEAE 68 (91)
Q Consensus 11 a~FvlVQaLVYLIL--s~SS~VFS~~~~~~~~rs~sFrpaRS~SiRR~lA~LsD-~P~g~e 68 (91)
|.+.+-+++-|+|- .+=++.+....+ | ..+..+-+..+++. +|-|||
T Consensus 101 A~~~l~~~~E~fi~~l~~~A~~~a~~~k----R-------kTI~~~DI~~Av~~~~~~~~~ 150 (151)
T d1f1ea_ 101 AVDLYNKLICRATEELGEKAAEYADEDG----R-------KTVQGEDVEKAITYSMPKGGE 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT----C-------SEECHHHHHHHHHHHSGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-------CcCCHHHHHHHHHHcCCCcCC
Confidence 55666666666653 222222332221 1 36777888888888 788887
Done!