BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037048
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 132/227 (58%), Gaps = 37/227 (16%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDASVLLDD + FTGEKTA P+ NS RGFEVIDTIK Q+ES CP V
Sbjct: 48 GCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARD 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSG 107
V LGG SW V LGRRDSTTASL ANSDLP P +L LI+AF++ G T +E+ LSG
Sbjct: 108 SVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSG 167
Query: 108 ARTIGQA-----------PTDIDPLYEVSLREKKYASGVSVL-----VTTPISFDNDYYK 151
A TIGQA ++IDP Y SL+ + G VTTP FDN YY
Sbjct: 168 AHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYI 227
Query: 152 SLR---GLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQ 192
+LR GLL SD F G ST SQ + AYS A F D ++++
Sbjct: 228 NLRNKKGLLHSDQQLFNGVSTDSQVT--AYSNNAATFNTDFGNAMIK 272
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 104/199 (52%), Gaps = 39/199 (19%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLDD + EK A P+ NS RGF V+D IK LE++CP V
Sbjct: 49 GCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEA 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSG 107
V GGPSW V LGRRDS TA+L ANS +P P SL + F+ GL ++ ALSG
Sbjct: 109 SVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSG 168
Query: 108 ARTIGQAPTDI--------------DPLYEVSLR--------EKKYASGVSVL-VTTPIS 144
A T G+A + DP +L + AS ++ L ++TP +
Sbjct: 169 AHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDA 228
Query: 145 FDNDYYKSLR---GLLISD 160
FDN+Y+ +L+ GLL SD
Sbjct: 229 FDNNYFANLQSNDGLLQSD 247
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 118/234 (50%), Gaps = 42/234 (17%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD++ + EK A P+ NS RGF V+D IK LE++CP V
Sbjct: 50 GCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQA 109
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSG 107
V GGPSW V LGRRD+ TA+ ANS +P P L + + F+ GL ++ ALSG
Sbjct: 110 SVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSG 169
Query: 108 ARTIGQAPTDI--DPLYEVSLR--------------------EKKYASGVSVL-VTTPIS 144
A T G+A + + L+ S + +K SG + L ++TP +
Sbjct: 170 AHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDA 229
Query: 145 FDNDYYKSLR---GLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQ 192
FDN+Y+ +L+ GLL SD F +A+ +++ F + A S++
Sbjct: 230 FDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMIN 283
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 107/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LPGP +L +L +F + GL + ++ ALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 229 IFDNKYYVNLEEQKGLIQSD 248
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 107/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q + +D LY S LR +G +S LV TP
Sbjct: 169 GGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 229 IFDNKYYVNLEEQKGLIQSD 248
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 105/200 (52%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LR-----EKKYASGVSVLVTTPI 143
G T G Q +D LY S LR ++ V + + TP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPT 228
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 229 IFDNKYYVNLEEQKGLIQSD 248
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 228 IFDNKYYVNLEEQKGLIQSD 247
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 228 IFDNKYYVNLEEQKGLIQSD 247
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 228 IFDNKYYVNLEEQKGLIQSD 247
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 229 IFDNKYYVNLEEQKGLIQSD 248
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 229 IFDNKYYVNLEEQKGLIQSD 248
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 228 IFDNKYYVNLEEQKGLIQSD 247
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 229 IFDNKYYVNLEEQKGLIQSD 248
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 106/200 (53%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ ALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G + G Q +D LY S LR +G +S LV TP
Sbjct: 168 GGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 228 IFDNKYYVNLEEQKGLIQSD 247
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 105/200 (52%), Gaps = 40/200 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD+ +F EK A + NS RGF VID +K +ES+CP +V
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT-AEEMAALS 106
V GGPSWRV LGRRDS A LDLAN++LP P +L +L +F + GL + ++ AL
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALY 167
Query: 107 GARTIG--QAPTDIDPLYEVS----------------LREKKYASG-VSVLV----TTPI 143
G T G Q +D LY S LR +G +S LV TP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 144 SFDNDYYKSL---RGLLISD 160
FDN YY +L +GL+ SD
Sbjct: 228 IFDNKYYVNLEEQKGLIQSD 247
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 120/253 (47%), Gaps = 52/253 (20%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDAS+LLD A + EK A+P+ NS RGFEVIDTIK +E++CP V
Sbjct: 48 GCDASLLLDGADS---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARD 104
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSG 107
V GGP WRV LGR+D A+ + AN +LP P L +I F L ++ ALSG
Sbjct: 105 SVVLSGGPGWRVALGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSG 163
Query: 108 ARTIGQAPTDI--------------DPLYEVSLREKKYAS---GVSVLVTTPI------S 144
A T GQA + D E SL G + +T P+ +
Sbjct: 164 AHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDT 223
Query: 145 FDNDYYKSL---RGLLISD---FRG--GSTASQPSANAYSPAAEFFLRDLAFSLLQRSKW 196
FDN+Y+K+L +GLL SD F ++ AYS + F RD ++++
Sbjct: 224 FDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNI 283
Query: 197 VSAHSRGLGGEIQ 209
S G GE++
Sbjct: 284 ----SNGASGEVR 292
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 98/186 (52%), Gaps = 36/186 (19%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCP------------ASV 48
GCD SVLL++ T E+ ALP+ NS RG +V++ IK +E+SCP A +
Sbjct: 48 GCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEI 107
Query: 49 VKQLGG-PSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSG 107
LGG P W V LGRRDS TA+ LAN +LP P +L +L +FA GL ++ LSG
Sbjct: 108 ASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSG 167
Query: 108 ARTIGQA--PTDIDPLYEVS----------------LREK--KYASG---VSVLVTTPIS 144
T G+A T I+ LY S LR + + A+G ++ ++TP
Sbjct: 168 GHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQ 227
Query: 145 FDNDYY 150
FDN YY
Sbjct: 228 FDNRYY 233
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 98/202 (48%), Gaps = 43/202 (21%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV------------ 48
GCDASVLLD A T EK A+P+ S RGFEVI K +E++CP +V
Sbjct: 48 GCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARD 107
Query: 49 -VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSG 107
G +++V GRRD T + AN+ +P P + +LI +FA+ LTA+EM LSG
Sbjct: 108 SANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSG 167
Query: 108 ARTIGQA-------------------PTDIDPLYEVSLREKKYASG-------VSVLVTT 141
A +IG A PT + P Y LR A+ VS+ + T
Sbjct: 168 AHSIGVAHCSSFTNRLYNFNSGSGIDPT-LSPSYAALLRNTCPANSTRFTPITVSLDIIT 226
Query: 142 PISFDNDYYKSLR---GLLISD 160
P DN YY ++ GLL SD
Sbjct: 227 PSVLDNMYYTGVQLTLGLLTSD 248
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 94/197 (47%), Gaps = 38/197 (19%)
Query: 1 GCDASVLLDDAATFTGEKTALPDFN-SGRGFEVIDTIKCQLESSCPASVVK--------- 50
GCDASVLLD +AT GE+ A P+ F+ ++ I+ +LE C +VV
Sbjct: 55 GCDASVLLDGSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAA 114
Query: 51 -----QLGGPSWRVQLGRRDSTT-ASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAA 104
GGP +RV LGRRDS + AS SDLPGP ++ L+ GL A ++
Sbjct: 115 RDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVT 174
Query: 105 LSGARTIGQA--------------PTDIDPLYEVSLREKKYASGV---SVL-VTTPISFD 146
+SG TIG A PT I P + L+ A G +VL V TP FD
Sbjct: 175 ISGGHTIGLAHCSSFEDRLFPRPDPT-ISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFD 233
Query: 147 NDYYKSL---RGLLISD 160
N YY L GL +SD
Sbjct: 234 NKYYIDLVNREGLFVSD 250
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 46 ASVVKQLGGPSWRVQLGRRDSTTASLDLANSDLP--GPDMSLGELITAFADTGLTAEEMA 103
A+ +++ GGP ++ GR D T LP GP L F GL +E+
Sbjct: 98 ATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVFYRMGLNDKEIV 157
Query: 104 ALSGARTIGQAPTDIDPLYEVSLREKK---YASGVSVLVTTPISFDNDYYKSLR 154
ALSGA T+G++ D + + K A G + FDN Y+K ++
Sbjct: 158 ALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIK 211
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVS-VLVTTPISFDNDYYKSL 153
TIG A K ASG + P+ FDN Y+ L
Sbjct: 173 GHTIGAA--------------HKEASGFEGPWTSNPLIFDNSYFTEL 205
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 46 ASVVKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAAL 105
+ V+++ GP + GR D T N LP D + T F + E+ AL
Sbjct: 113 VTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVAL 171
Query: 106 SGARTIGQ 113
SGA T+G+
Sbjct: 172 SGAHTLGK 179
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 31.6 bits (70), Expect = 0.33, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 75 NSDLPGPDMSLGELITAFADTGLTAEEMAAL---SGARTIGQAPTDIDPLYEVSLREKKY 131
NS+L M L E + +F D E AL + RT+G P D+ + ++L E K
Sbjct: 33 NSELIRLSMVLKEKVNSFEDADEHLFEAFALVREAARRTLGMRPFDVQVMGGIALHEGKV 92
Query: 132 A-----SGVSVLVTTPISFDNDYYKSLRGLLISDF 161
A G ++ T PI + K + + ++D+
Sbjct: 93 AEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDY 127
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 31.6 bits (70), Expect = 0.33, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 75 NSDLPGPDMSLGELITAFADTGLTAEEMAAL---SGARTIGQAPTDIDPLYEVSLREKKY 131
NS+L M L E + +F D E AL + RT+G P D+ + ++L E K
Sbjct: 33 NSELIRLSMVLKEKVNSFEDADEHLFEAFALVREAARRTLGMRPFDVQVMGGIALHEGKV 92
Query: 132 A-----SGVSVLVTTPISFDNDYYKSLRGLLISDF 161
A G ++ T PI + K + + ++D+
Sbjct: 93 AEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDY 127
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 104 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 160
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 161 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 193
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 173 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 205
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 104 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 160
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 161 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 193
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 104 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 160
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 161 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 193
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 173 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 205
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 173 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 205
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 104 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 160
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 161 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 193
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 173 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 205
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 173 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 205
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GLT +++ ALSG
Sbjct: 116 VEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSG 172
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 173 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 205
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADT-GLTAEEMAALSG 107
V+ GGP GR D LP L F GL+ +++ ALSG
Sbjct: 104 VEITGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSG 160
Query: 108 ARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYYKSL 153
TIG A K+ + + P+ FDN Y+ L
Sbjct: 161 GHTIGAA-------------HKERSGFEGPWTSNPLIFDNSYFTEL 193
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 54 GPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQ 113
GP R +LG + S T L N +PG D +GE T F T + GA+ +G
Sbjct: 209 GPKER-KLGIKGSPTTELYFENCRIPG-DRIIGEPGTGFKTALATLDHTRPTIGAQAVGI 266
Query: 114 APTDIDPLYEVSLREKKYASGVS 136
A +D + K++ VS
Sbjct: 267 AQGALDAAIAYTKERKQFGRPVS 289
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 42 SSCPASVVKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEE 101
S+CP GG LGR D+ AS D +PGP S+ ++ D G + E
Sbjct: 112 SNCP-------GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVE 161
Query: 102 MAALSGARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYY--KSLRGLLI 158
+ L + +I A +DP S+ + S TP FD+ ++ L+G L
Sbjct: 162 VVWLLASHSIAAA-DKVDP----SIPGTPFDS-------TPEVFDSQFFIETQLKGRLF 208
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 42 SSCPASVVKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEE 101
S+CP GG LGR D+ AS D +PGP S+ ++ D G + E
Sbjct: 112 SNCP-------GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVE 161
Query: 102 MAALSGARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYY--KSLRGLLI 158
+ L + +I A +DP S+ + S TP FD+ ++ L+G L
Sbjct: 162 VVWLLASHSIAAA-DKVDP----SIPGTPFDS-------TPEVFDSQFFIETQLKGRLF 208
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 42 SSCPASVVKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAEE 101
S+CP GG LGR D+ AS D +PGP S+ ++ D G + E
Sbjct: 112 SNCP-------GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVE 161
Query: 102 MAALSGARTIGQAPTDIDPLYEVSLREKKYASGVSVLVTTPISFDNDYY--KSLRGLLI 158
+ L + +I A +DP S+ + S TP FD+ ++ L+G L
Sbjct: 162 VVWLLASHSIAAA-DGVDP----SIPGTPFDS-------TPEVFDSQFFIETQLKGRLF 208
>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
Mycobacterium Tuberculosis H37rv
Length = 549
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 29 GFEVIDTIKCQLESSCPASVVKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGEL 88
G +V+ + L++ + +L W G+R ST ++ + SDL GP M + +
Sbjct: 109 GQDVVTDVHAVLDAM--GAFTDRLRSGEWTGATGKRISTVVNIGIGGSDL-GPVM-VYQA 164
Query: 89 ITAFADTGLTAEEMAALSGARTIGQAPTDIDP 120
+ +AD G++A ++ + A I D+DP
Sbjct: 165 LRHYADAGISARFVSNVDPADLIATL-ADLDP 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,132,812
Number of Sequences: 62578
Number of extensions: 242592
Number of successful extensions: 614
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 48
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.5 bits)