Query 037048
Match_columns 209
No_of_seqs 118 out of 1150
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.7E-66 3.8E-71 457.9 15.4 200 1-209 71-317 (324)
2 cd00693 secretory_peroxidase H 100.0 3.1E-63 6.7E-68 435.5 17.0 203 1-209 48-292 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 3.2E-51 7E-56 356.4 12.4 180 1-208 53-252 (289)
4 cd00691 ascorbate_peroxidase A 100.0 4.3E-48 9.4E-53 332.8 10.4 182 1-199 43-251 (253)
5 cd00692 ligninase Ligninase an 100.0 1.2E-46 2.7E-51 332.9 14.1 172 1-199 65-276 (328)
6 PLN02879 L-ascorbate peroxidas 100.0 4E-47 8.7E-52 325.6 10.0 173 1-199 56-248 (251)
7 PLN02364 L-ascorbate peroxidas 100.0 5.5E-47 1.2E-51 325.1 9.8 173 1-199 55-248 (250)
8 PF00141 peroxidase: Peroxidas 100.0 5.9E-47 1.3E-51 322.0 2.8 165 1-178 32-230 (230)
9 cd00314 plant_peroxidase_like 100.0 3.9E-41 8.5E-46 289.7 11.6 174 1-195 41-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 4.3E-39 9.4E-44 289.6 10.1 188 15-206 101-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3.5E-35 7.6E-40 279.2 12.3 182 15-199 111-403 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4.7E-34 1E-38 270.4 10.4 183 14-199 112-409 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.8E-33 3.8E-38 241.6 6.1 173 1-195 64-264 (264)
14 cd08200 catalase_peroxidase_2 99.9 1.2E-26 2.7E-31 201.7 8.1 166 15-197 61-296 (297)
15 PRK15061 catalase/hydroperoxid 99.9 1.7E-22 3.7E-27 192.1 8.7 165 15-197 486-721 (726)
16 TIGR00198 cat_per_HPI catalase 99.9 2.3E-22 5E-27 191.9 7.6 166 15-198 479-710 (716)
17 COG0376 KatG Catalase (peroxid 99.8 4.9E-20 1.1E-24 169.2 10.3 179 14-195 125-414 (730)
18 COG0376 KatG Catalase (peroxid 97.3 0.0003 6.4E-09 66.2 5.0 163 16-197 497-725 (730)
19 KOG0400 40S ribosomal protein 75.8 2.8 6.1E-05 33.0 2.8 37 78-114 26-63 (151)
20 PTZ00411 transaldolase-like pr 72.9 4.9 0.00011 36.3 4.1 75 50-129 178-265 (333)
21 PF11895 DUF3415: Domain of un 72.4 3.4 7.4E-05 29.7 2.3 19 181-199 2-20 (80)
22 PRK12346 transaldolase A; Prov 65.5 13 0.00027 33.5 5.0 75 49-129 166-254 (316)
23 PRK05269 transaldolase B; Prov 52.6 27 0.00059 31.3 4.9 76 49-129 167-255 (318)
24 TIGR00874 talAB transaldolase. 51.4 33 0.00072 30.8 5.3 76 49-129 165-253 (317)
25 PRK12309 transaldolase/EF-hand 50.2 43 0.00094 30.9 6.0 73 50-128 172-258 (391)
26 cd00956 Transaldolase_FSA Tran 48.7 14 0.00031 30.9 2.4 85 28-127 89-193 (211)
27 cd00957 Transaldolase_TalAB Tr 41.7 32 0.0007 30.8 3.6 73 50-128 166-252 (313)
28 PLN00017 photosystem I reactio 33.4 24 0.00053 25.6 1.2 21 175-195 38-58 (90)
29 PLN00197 beta-amylase; Provisi 30.3 73 0.0016 30.9 4.2 33 171-209 244-281 (573)
30 cd00439 Transaldolase Transald 27.2 66 0.0014 27.7 3.1 62 49-110 156-230 (252)
31 PF04225 OapA: Opacity-associa 26.0 68 0.0015 22.9 2.5 25 86-110 11-35 (85)
32 PLN02705 beta-amylase 21.1 85 0.0018 31.0 2.8 33 171-209 385-423 (681)
33 PHA03388 ORF1_granulin Granuli 21.0 42 0.00091 28.4 0.7 14 140-153 14-27 (248)
34 PF09288 UBA_3: Fungal ubiquit 20.9 1.1E+02 0.0025 20.3 2.6 20 86-105 10-29 (55)
35 PLN02161 beta-amylase 20.8 91 0.002 30.0 2.9 33 171-209 234-271 (531)
36 PRK12656 fructose-6-phosphate 20.1 62 0.0013 27.5 1.5 64 49-127 122-197 (222)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.7e-66 Score=457.93 Aligned_cols=200 Identities=35% Similarity=0.538 Sum_probs=185.0
Q ss_pred CCceeEEccCCCCCccccccCCCCCCchhHHHHHHHHHHhhhhCCCce-------------EEccCCCceeccCCCcCCC
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV-------------VKQLGGPSWRVQLGRRDST 67 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l~g~dvI~~iK~~le~~cpg~V-------------v~~~GGP~~~v~~GR~D~~ 67 (209)
||||||||+++ ..||++++|. ++||||+|+.||++||+.|||+| |+++|||.|+|++||||++
T Consensus 71 GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~ 146 (324)
T PLN03030 71 GCDASILIDGS---NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGR 146 (324)
T ss_pred CCceEEeeCCC---cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCC
Confidence 89999999964 3699999998 99999999999999999999998 8999999999999999999
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCC-------------------CCCCCHHHHHHHhh
Q 037048 68 TASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQA-------------------PTDIDPLYEVSLRE 128 (209)
Q Consensus 68 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~-------------------d~~~~~~~~~~l~~ 128 (209)
+|...+++ +||.|+.++++|++.|++|||+.+|||+||||||||++ ||+|+|.|+.+|+.
T Consensus 147 ~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~ 225 (324)
T PLN03030 147 VSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQA 225 (324)
T ss_pred CCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhc
Confidence 99887775 89999999999999999999999999999999999995 67899999999999
Q ss_pred cCCC-CCCC---Cc-cccCcccChHHHHHh---hhccccC---CCCCCCCchHHHhhccccH----HHHHHHHHHHHHHh
Q 037048 129 KKYA-SGVS---VL-VTTPISFDNDYYKSL---RGLLISD---FRGGSTASQPSANAYSPAA----EFFLRDLAFSLLQR 193 (209)
Q Consensus 129 ~cp~-~~~~---~~-~~tp~~FDn~Yy~~l---~glL~SD---~~d~~t~~~~~V~~ya~~~----~~F~~~Fa~Am~Km 193 (209)
.||. +... .+ ..||.+|||+||+|| +|||+|| +.|++|++ +|++||.|+ .+||++|++||+||
T Consensus 226 ~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~--~V~~~A~~~~~~~~~F~~~Fa~AmvKM 303 (324)
T PLN03030 226 LCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRT--FVQRFLGVRGLAGLNFNVEFGRSMVKM 303 (324)
T ss_pred cCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHH--HHHHHhcccccchhhhHHHHHHHHHHH
Confidence 9995 2221 23 579999999999999 8999999 68999999 999999875 59999999999999
Q ss_pred hcCccCCCCCCCCccC
Q 037048 194 SKWVSAHSRGLGGEIQ 209 (209)
Q Consensus 194 ~~i~v~~~tg~~GeIR 209 (209)
|+|+|+ ||++||||
T Consensus 304 g~i~Vl--TG~~GEIR 317 (324)
T PLN03030 304 SNIGVK--TGTNGEIR 317 (324)
T ss_pred ccCCCC--CCCCCcee
Confidence 999999 99999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.1e-63 Score=435.50 Aligned_cols=203 Identities=47% Similarity=0.727 Sum_probs=189.5
Q ss_pred CCceeEEccCCCCCccccccCCCCCCchhHHHHHHHHHHhhhhCCCce-------------EEccCCCceeccCCCcCCC
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV-------------VKQLGGPSWRVQLGRRDST 67 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l~g~dvI~~iK~~le~~cpg~V-------------v~~~GGP~~~v~~GR~D~~ 67 (209)
||||||||++++++.+|+++++|. +++||++|+.||++||+.||++| |+++|||.|+|++||+|+.
T Consensus 48 GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~ 126 (298)
T cd00693 48 GCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGR 126 (298)
T ss_pred CcceeEEecCCCCCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCc
Confidence 899999999887778999999998 89999999999999999999998 8889999999999999999
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCC------------------CCCCCHHHHHHHhhc
Q 037048 68 TASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQA------------------PTDIDPLYEVSLREK 129 (209)
Q Consensus 68 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~------------------d~~~~~~~~~~l~~~ 129 (209)
+|.+..+ ..||.|+.++++|++.|+++||+++|||||+||||||++ ||+|++.|+..|+..
T Consensus 127 ~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~ 205 (298)
T cd00693 127 VSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKK 205 (298)
T ss_pred ccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCC
Confidence 8877666 789999999999999999999999999999999999997 578999999999999
Q ss_pred CCCC-CCC---Ccc-ccCcccChHHHHHh---hhccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhcCcc
Q 037048 130 KYAS-GVS---VLV-TTPISFDNDYYKSL---RGLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSKWVS 198 (209)
Q Consensus 130 cp~~-~~~---~~~-~tp~~FDn~Yy~~l---~glL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~i~v 198 (209)
||.. ... .++ .||.+|||+||++| +|||+|| +.|++|+. +|++||.||++|+++|++||+||++|+|
T Consensus 206 Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~--~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v 283 (298)
T cd00693 206 CPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRA--IVNRYAANQDAFFRDFAAAMVKMGNIGV 283 (298)
T ss_pred CCCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCccHHH--HHHHHhhCHHHHHHHHHHHHHHHhhcCC
Confidence 9972 222 234 89999999999999 8999999 68999999 9999999999999999999999999999
Q ss_pred CCCCCCCCccC
Q 037048 199 AHSRGLGGEIQ 209 (209)
Q Consensus 199 ~~~tg~~GeIR 209 (209)
+ ||.+||||
T Consensus 284 ~--tg~~GeiR 292 (298)
T cd00693 284 L--TGSQGEIR 292 (298)
T ss_pred c--cCCCCccC
Confidence 9 99999998
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.2e-51 Score=356.42 Aligned_cols=180 Identities=23% Similarity=0.318 Sum_probs=159.3
Q ss_pred CCceeEEccCCCCCccccccCCCCCCc-hhHHHHHHHHHHhhh-hCCCce-------EEccCCCceeccCCCcCCCCccc
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSG-RGFEVIDTIKCQLES-SCPASV-------VKQLGGPSWRVQLGRRDSTTASL 71 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l-~g~dvI~~iK~~le~-~cpg~V-------v~~~GGP~~~v~~GR~D~~~s~~ 71 (209)
||||||++. +|+++++|. +| +||++|+.||+++.. .|..++ |+++|||.|+|++||+|+++++
T Consensus 53 GcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~- 124 (289)
T PLN02608 53 GPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP- 124 (289)
T ss_pred CCCeeeecc------cccCCcccc-chHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC-
Confidence 899999983 499999998 88 699999999999832 455444 8899999999999999999986
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCCCCCCCHHHHHHHhhcCCC-CCCCCccccCcccChHHH
Q 037048 72 DLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQAPTDIDPLYEVSLREKKYA-SGVSVLVTTPISFDNDYY 150 (209)
Q Consensus 72 ~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~d~~~~~~~~~~l~~~cp~-~~~~~~~~tp~~FDn~Yy 150 (209)
++.+||.|+.+++++++.|+++||+.+|||+|+||||||+++ |.. +..++++.||.+|||+||
T Consensus 125 --~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ah--------------c~r~g~~g~~~~Tp~~FDN~Yy 188 (289)
T PLN02608 125 --EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAH--------------PERSGFDGPWTKEPLKFDNSYF 188 (289)
T ss_pred --ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccc--------------ccCCCCCCCCCCCCCccChHHH
Confidence 346899999999999999999999999999999999999995 321 122345679999999999
Q ss_pred HHh-----hhc--cccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhcCccCCCCCCCCcc
Q 037048 151 KSL-----RGL--LISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSKWVSAHSRGLGGEI 208 (209)
Q Consensus 151 ~~l-----~gl--L~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~i~v~~~tg~~GeI 208 (209)
++| +|+ |+|| +.|++|++ +|+.||.|+++|+++|++||+||++|+|+ ||++||+
T Consensus 189 ~~ll~~~~~gll~L~SD~~L~~d~~T~~--~V~~fA~~~~~F~~~Fa~Am~Km~~lgvl--tg~~Ge~ 252 (289)
T PLN02608 189 VELLKGESEGLLKLPTDKALLEDPEFRP--YVELYAKDEDAFFRDYAESHKKLSELGFT--PPSSAFK 252 (289)
T ss_pred HHHHcCCcCCccccccCHhhhcChhHHH--HHHHHhhCHHHHHHHHHHHHHHHHcCCCC--CCCCCcc
Confidence 999 377 7999 58999999 99999999999999999999999999999 9999997
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.3e-48 Score=332.77 Aligned_cols=182 Identities=22% Similarity=0.306 Sum_probs=157.6
Q ss_pred CCceeEEccCCC---CCccccccCCCCCCc-hhHHHHHHHHHHh-hhhCCCce-------EEccCCCceeccCCCcCCCC
Q 037048 1 GCDASVLLDDAA---TFTGEKTALPDFNSG-RGFEVIDTIKCQL-ESSCPASV-------VKQLGGPSWRVQLGRRDSTT 68 (209)
Q Consensus 1 GCDaSill~~~~---~~~~E~~~~~N~~~l-~g~dvI~~iK~~l-e~~cpg~V-------v~~~GGP~~~v~~GR~D~~~ 68 (209)
+||+|++++... .+.+|+++++|. +| +||++|+.||+++ .-.|..++ |+++|||.|+|++||+|+.+
T Consensus 43 ~~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~ 121 (253)
T cd00691 43 TYDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASD 121 (253)
T ss_pred ccccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCc
Confidence 588999885432 235799999998 67 8999999999998 22455444 88899999999999999999
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCCCCCCCHHHHHHHhhcCCC-CCCCCccccCcccCh
Q 037048 69 ASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQAPTDIDPLYEVSLREKKYA-SGVSVLVTTPISFDN 147 (209)
Q Consensus 69 s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~d~~~~~~~~~~l~~~cp~-~~~~~~~~tp~~FDn 147 (209)
+....++.+||.|+.++++|++.|+++||+.+|||||+||||||+++ |.. +....+..||.+|||
T Consensus 122 s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~--------------c~~~~~~g~~~~tp~~FDn 187 (253)
T cd00691 122 PEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCH--------------KERSGYDGPWTKNPLKFDN 187 (253)
T ss_pred ccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeeccc--------------ccCCCCCCCCCCCCCcccH
Confidence 98777788999999999999999999999999999999999999984 311 112234579999999
Q ss_pred HHHHHh---hh--------ccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhcCccC
Q 037048 148 DYYKSL---RG--------LLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSKWVSA 199 (209)
Q Consensus 148 ~Yy~~l---~g--------lL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~i~v~ 199 (209)
+||++| +| +|+|| +.|++|++ +|+.||.|+++|+++|++||+||++|+|.
T Consensus 188 ~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~--~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 188 SYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRP--YVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HHHHHHhcCCCccCcCcceechhhHHHHcCccHHH--HHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999 78 99999 58999999 99999999999999999999999999986
No 5
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.2e-46 Score=332.90 Aligned_cols=172 Identities=23% Similarity=0.321 Sum_probs=151.3
Q ss_pred CCceeEEccCCCCCccccccCCCCCCchhHHHHHHHHHHhhhhC---CCce-------EE-ccCCCceeccCCCcCCCCc
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSC---PASV-------VK-QLGGPSWRVQLGRRDSTTA 69 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l~g~dvI~~iK~~le~~c---pg~V-------v~-~~GGP~~~v~~GR~D~~~s 69 (209)
||||||||+++ .|+.+++|. +|+ ++|+.||..+|+.| ...+ |+ +.|||.|+|++||+|++++
T Consensus 65 GcDgSill~~~----~E~~~~~N~-gL~--~vvd~lk~~~e~~cVScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s 137 (328)
T cd00692 65 GADGSIVLFDD----IETAFHANI-GLD--EIVEALRPFHQKHNVSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQP 137 (328)
T ss_pred CcCceeecCCc----ccccCCCCC-CHH--HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCC
Confidence 89999999853 699999998 887 99999999999988 1111 55 5799999999999999988
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCCC---CCCCHHHHHHHhhcCCCCCCCCccccCcccC
Q 037048 70 SLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQAP---TDIDPLYEVSLREKKYASGVSVLVTTPISFD 146 (209)
Q Consensus 70 ~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~d---~~~~~~~~~~l~~~cp~~~~~~~~~tp~~FD 146 (209)
.+ ++.||.|+.++++|++.|++|||+.+|||+|+||||||+++ |+|+ ..+|+.||.+||
T Consensus 138 ~~---~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~~Dps~~---------------g~p~D~TP~~FD 199 (328)
T cd00692 138 AP---DGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQDFVDPSIA---------------GTPFDSTPGVFD 199 (328)
T ss_pred Cc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCCCCCCCC---------------CCCCCCCcchhc
Confidence 64 56899999999999999999999999999999999999984 3332 235678999999
Q ss_pred hHHHHHh----hh-------------------ccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhcCccC
Q 037048 147 NDYYKSL----RG-------------------LLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSKWVSA 199 (209)
Q Consensus 147 n~Yy~~l----~g-------------------lL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~i~v~ 199 (209)
|+||+|+ ++ +|+|| +.|++|+. +|++||.||++|+++|++||+||++|+|.
T Consensus 200 n~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~--~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~ 276 (328)
T cd00692 200 TQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTAC--EWQSFVNNQAKMNAAFAAAMLKLSLLGQD 276 (328)
T ss_pred HHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHH--HHHHHhcCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999996 33 38999 68999999 99999999999999999999999999997
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4e-47 Score=325.61 Aligned_cols=173 Identities=24% Similarity=0.330 Sum_probs=152.3
Q ss_pred CCceeEEccCCCCCccccccCCCCCCch-hHHHHHHHHHHhhh-hCCCce-------EEccCCCceeccCCCcCCCCccc
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSGR-GFEVIDTIKCQLES-SCPASV-------VKQLGGPSWRVQLGRRDSTTASL 71 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l~-g~dvI~~iK~~le~-~cpg~V-------v~~~GGP~~~v~~GR~D~~~s~~ 71 (209)
||||||... .|+++++|. +|+ ++++|+.||+++.. +|...+ |+++|||.|+|++||+|++++++
T Consensus 56 G~~Gsirf~------~E~~~~~N~-gL~~~~~~i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~ 128 (251)
T PLN02879 56 GPFGTIRHP------QELAHDANN-GLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP 128 (251)
T ss_pred CCCeeecCh------hhccCCCcC-ChHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc
Confidence 899999862 599999998 776 99999999999832 465443 88999999999999999998753
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCCCCCCCHHHHHHHhhcCCC-CCCCCccccCcccChHHH
Q 037048 72 DLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQAPTDIDPLYEVSLREKKYA-SGVSVLVTTPISFDNDYY 150 (209)
Q Consensus 72 ~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~d~~~~~~~~~~l~~~cp~-~~~~~~~~tp~~FDn~Yy 150 (209)
+++||.|+.++++|++.|++|||+.+|||||+||||||+++ |.. +..+.|+.||.+|||+||
T Consensus 129 ---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah--------------~~r~g~~g~~d~tp~~FDN~Yy 191 (251)
T PLN02879 129 ---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCH--------------KERSGFEGAWTPNPLIFDNSYF 191 (251)
T ss_pred ---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccc--------------cccccCCCCCCCCccceeHHHH
Confidence 56899999999999999999999999999999999999985 322 223457889999999999
Q ss_pred HHh-----hhc--cccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhcCccC
Q 037048 151 KSL-----RGL--LISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSKWVSA 199 (209)
Q Consensus 151 ~~l-----~gl--L~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~i~v~ 199 (209)
++| +|+ |+|| +.|++|+. +|+.||.||++||++|++||+||++|++.
T Consensus 192 ~~ll~~~~~gll~L~SD~aL~~D~~t~~--~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 192 KEILSGEKEGLLQLPTDKALLDDPLFLP--FVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHcCCcCCCccchhhHHHhcCCcHHH--HHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999 477 6899 68999999 99999999999999999999999999975
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=5.5e-47 Score=325.05 Aligned_cols=173 Identities=27% Similarity=0.381 Sum_probs=150.0
Q ss_pred CCceeEEccCCCCCccccccCCCCCCc-hhHHHHHHHHHHhhh-hCCCce-------EEccCCCceeccCCCcCCCCccc
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSG-RGFEVIDTIKCQLES-SCPASV-------VKQLGGPSWRVQLGRRDSTTASL 71 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l-~g~dvI~~iK~~le~-~cpg~V-------v~~~GGP~~~v~~GR~D~~~s~~ 71 (209)
||||||.. .+|+++++|. ++ +||++|+.||+++.. .|..++ |+++|||.|+|++||+|++++++
T Consensus 55 G~dgSi~~------~~E~~~~~N~-gl~~~~~~i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~ 127 (250)
T PLN02364 55 GPFGTMRF------DAEQAHGANS-GIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP 127 (250)
T ss_pred CCCccccc------cccccCCCcc-CHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc
Confidence 89999943 3599999998 66 899999999999832 465554 88999999999999999999864
Q ss_pred ccccCCCCCCCCCHHHHHHHHHH-cCCCHHHHHHHhcccccCCCCCCCCHHHHHHHhhcCCC-CCCCCccccCcccChHH
Q 037048 72 DLANSDLPGPDMSLGELITAFAD-TGLTAEEMAALSGARTIGQAPTDIDPLYEVSLREKKYA-SGVSVLVTTPISFDNDY 149 (209)
Q Consensus 72 ~~~~~~lP~p~~~~~~l~~~F~~-~G~~~~dlVaLsGaHtiG~~d~~~~~~~~~~l~~~cp~-~~~~~~~~tp~~FDn~Y 149 (209)
+..||.|+.++++|++.|+. +||+.+|||||+||||||+++ |.. +..+.+..||.+|||+|
T Consensus 128 ---~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~h--------------c~r~~~~g~~~~tp~~fDn~Y 190 (250)
T PLN02364 128 ---EGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCH--------------KDRSGFEGAWTSNPLIFDNSY 190 (250)
T ss_pred ---cCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeecccc--------------CCCCCCCCCCCCCCCccchHH
Confidence 46899999999999999997 599999999999999999984 321 12234568999999999
Q ss_pred HHHh-----hhccc--cC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhcCccC
Q 037048 150 YKSL-----RGLLI--SD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSKWVSA 199 (209)
Q Consensus 150 y~~l-----~glL~--SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~i~v~ 199 (209)
|++| +|+|. || +.|++|+. +|+.||.|+++|+++|++||+||++|++.
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~d~~T~~--~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLDDPVFRP--LVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHccCchHHH--HHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999 47765 99 68999999 99999999999999999999999999875
No 8
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5.9e-47 Score=322.02 Aligned_cols=165 Identities=49% Similarity=0.744 Sum_probs=144.6
Q ss_pred CCceeEEccCCCCCccccccCCCCCCch-hHHHHHHHHHHhhhhCCCce-------------EEccCCCceeccCCCcCC
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSGR-GFEVIDTIKCQLESSCPASV-------------VKQLGGPSWRVQLGRRDS 66 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l~-g~dvI~~iK~~le~~cpg~V-------------v~~~GGP~~~v~~GR~D~ 66 (209)
||||||||. ..|+++++|. +|+ |+++|+.||+++|+.||++| |+++|||.|+|++||+|+
T Consensus 32 GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~ 105 (230)
T PF00141_consen 32 GCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDG 105 (230)
T ss_dssp SSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-
T ss_pred ccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhccccccccccccccccccc
Confidence 899999993 4799999998 887 99999999999999999988 888999999999999999
Q ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcccccCCCC------------CCCCHHHHHHHhhcCCCCC
Q 037048 67 TTASLDLANSDLPGPDMSLGELITAFADTGLTAEEMAALSGARTIGQAP------------TDIDPLYEVSLREKKYASG 134 (209)
Q Consensus 67 ~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsGaHtiG~~d------------~~~~~~~~~~l~~~cp~~~ 134 (209)
++++...+ .+||.|+.++++|++.|++|||+++|||||+||||||+++ |.|++.|+.+ .|+.+.
T Consensus 106 ~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~rl~~~~dp~~d~~~~~~---~C~~~~ 181 (230)
T PF00141_consen 106 TVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFSRLYFPPDPTMDPGYAGQ---NCNSGG 181 (230)
T ss_dssp SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTGGTSCSSGTTSTHHHHHH---SSSTSG
T ss_pred cccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceecccccccccccccccccccee---ccCCCc
Confidence 99999777 6899999999999999999999999999999999999994 6799999988 894332
Q ss_pred CC--CccccCcccChHHHHHh---hhccccC---CCCCCCCchHHHhhcccc
Q 037048 135 VS--VLVTTPISFDNDYYKSL---RGLLISD---FRGGSTASQPSANAYSPA 178 (209)
Q Consensus 135 ~~--~~~~tp~~FDn~Yy~~l---~glL~SD---~~d~~t~~~~~V~~ya~~ 178 (209)
+. +++ ||.+|||+||++| +|+|+|| +.|++|+. +|++||.|
T Consensus 182 ~~~~~~d-tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~--~V~~yA~d 230 (230)
T PF00141_consen 182 DNGVPLD-TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP--IVERYAQD 230 (230)
T ss_dssp CTCEESS-STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH--HHHHHHHT
T ss_pred ccccccc-CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH--HHHHHhcC
Confidence 22 236 9999999999999 8999999 68999999 99999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.9e-41 Score=289.70 Aligned_cols=174 Identities=30% Similarity=0.476 Sum_probs=149.0
Q ss_pred CCceeEEccCCCCCccccccCCCCCCchhHHHHHHHHHHhhhhCCCce-------------EEcc--CCCceeccCCCcC
Q 037048 1 GCDASVLLDDAATFTGEKTALPDFNSGRGFEVIDTIKCQLESSCPASV-------------VKQL--GGPSWRVQLGRRD 65 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~l~g~dvI~~iK~~le~~cpg~V-------------v~~~--GGP~~~v~~GR~D 65 (209)
||||||++++ |+++++|.++.+++++|+.||.++|. |++| |+.+ |||.|+|++||+|
T Consensus 41 g~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D 112 (255)
T cd00314 41 GADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLD 112 (255)
T ss_pred CCCceEeccc------cccCcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCC
Confidence 8999999974 99999998556999999999999986 5555 7778 9999999999999
Q ss_pred CCCcc--cccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHh-ccccc-CCCCCCCCHHHHHHHhhcCCCCCCCCcccc
Q 037048 66 STTAS--LDLANSDLPGPDMSLGELITAFADTGLTAEEMAALS-GARTI-GQAPTDIDPLYEVSLREKKYASGVSVLVTT 141 (209)
Q Consensus 66 ~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLs-GaHti-G~~d~~~~~~~~~~l~~~cp~~~~~~~~~t 141 (209)
+..++ ...+...+|.|..+++++++.|+++||+++|||||+ ||||| |+++...... ..| ..++.|
T Consensus 113 ~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~------~~~-----~~~~~t 181 (255)
T cd00314 113 ATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNY------EGS-----GLWTST 181 (255)
T ss_pred CchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCc------ccC-----CCCCCC
Confidence 99774 344566788888899999999999999999999999 99999 9984221110 002 235789
Q ss_pred CcccChHHHHHh---h----------------hccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhc
Q 037048 142 PISFDNDYYKSL---R----------------GLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSK 195 (209)
Q Consensus 142 p~~FDn~Yy~~l---~----------------glL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~ 195 (209)
|.+|||+||++| + ++|+|| +.|++|+. +|+.||.|+++|+++|++||+||++
T Consensus 182 p~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~--~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 182 PFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRA--LVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHH--HHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999 4 899999 68889999 9999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.3e-39 Score=289.63 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=158.8
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHhhh--------hCCCce-EEccCCCceeccCCCcCCCCcccc-------------
Q 037048 15 TGEKTALPDFNSGRGFEVIDTIKCQLES--------SCPASV-VKQLGGPSWRVQLGRRDSTTASLD------------- 72 (209)
Q Consensus 15 ~~E~~~~~N~~~l~g~dvI~~iK~~le~--------~cpg~V-v~~~GGP~~~v~~GR~D~~~s~~~------------- 72 (209)
.+|+.++.|.++-++..+++.||+++.. +..|+| |+.+|||.|++..||.|...+...
T Consensus 101 ~pe~~~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~ 180 (409)
T cd00649 101 APLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADK 180 (409)
T ss_pred ccccCcHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhccccc
Confidence 4699999999555799999999999953 145666 899999999999999999754310
Q ss_pred ----------------------cccC--CCCCCCCCHHHHHHHHHHcCCCHHHHHHH-hcccccCCC-----------CC
Q 037048 73 ----------------------LANS--DLPGPDMSLGELITAFADTGLTAEEMAAL-SGARTIGQA-----------PT 116 (209)
Q Consensus 73 ----------------------~~~~--~lP~p~~~~~~l~~~F~~~G~~~~dlVaL-sGaHtiG~~-----------d~ 116 (209)
.+++ .||.|..++++|++.|.+|||+.+||||| +||||||++ +|
T Consensus 181 ~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP 260 (409)
T cd00649 181 RYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEP 260 (409)
T ss_pred ccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCC
Confidence 0122 69999999999999999999999999999 599999998 46
Q ss_pred CCCHHHHHHHh--hcCCCC-C--------CCCccccCcccChHHHHHh-h------------------------------
Q 037048 117 DIDPLYEVSLR--EKKYAS-G--------VSVLVTTPISFDNDYYKSL-R------------------------------ 154 (209)
Q Consensus 117 ~~~~~~~~~l~--~~cp~~-~--------~~~~~~tp~~FDn~Yy~~l-~------------------------------ 154 (209)
.+++.|+..|+ +.||.+ + +..|+.||.+|||+||++| .
T Consensus 261 ~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~ 340 (409)
T cd00649 261 EAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAH 340 (409)
T ss_pred CcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCcc
Confidence 89999999985 999972 1 1234689999999999999 4
Q ss_pred --------hccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHh--hcCccCCCCCCCC
Q 037048 155 --------GLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQR--SKWVSAHSRGLGG 206 (209)
Q Consensus 155 --------glL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km--~~i~v~~~tg~~G 206 (209)
+||+|| +.|++++. +|++||.|+++||++|++||+|| +.++|+ +=..|
T Consensus 341 ~~~~~~~~gmL~SD~aL~~Dp~tr~--iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~--~~~~g 401 (409)
T cd00649 341 DPSKKHAPMMLTTDLALRFDPEYEK--ISRRFLENPDEFADAFAKAWFKLTHRDMGPK--SRYLG 401 (409)
T ss_pred ccccccCcccchhhHhhhcCccHHH--HHHHHhcCHHHHHHHHHHHHHHHccccCCch--hhhcC
Confidence 789999 58999999 99999999999999999999999 689998 54433
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.5e-35 Score=279.21 Aligned_cols=182 Identities=20% Similarity=0.229 Sum_probs=151.5
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHhhh--hCCCc------e-EEccCCCceeccCCCcCCCCcc---------------
Q 037048 15 TGEKTALPDFNSGRGFEVIDTIKCQLES--SCPAS------V-VKQLGGPSWRVQLGRRDSTTAS--------------- 70 (209)
Q Consensus 15 ~~E~~~~~N~~~l~g~dvI~~iK~~le~--~cpg~------V-v~~~GGP~~~v~~GR~D~~~s~--------------- 70 (209)
.+|+.++.|.++-++..+++.||++... +|... | |+.+|||.|+|.+||+|+..+.
T Consensus 111 ~P~~sw~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~ 190 (716)
T TIGR00198 111 APLNSWPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSS 190 (716)
T ss_pred ccccCchhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcc
Confidence 4699999998666789999999986532 23322 2 8899999999999999994321
Q ss_pred ----------------------cccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHh-cccccCCC-----------CC
Q 037048 71 ----------------------LDLANSDLPGPDMSLGELITAFADTGLTAEEMAALS-GARTIGQA-----------PT 116 (209)
Q Consensus 71 ----------------------~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLs-GaHtiG~~-----------d~ 116 (209)
+.. ...+|.|..++.+|++.|.+||||.+|||||+ ||||||++ +|
T Consensus 191 ~~~~~~l~~p~a~~~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP 269 (716)
T TIGR00198 191 REDRESLENPLAATEMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDP 269 (716)
T ss_pred ccccccccccchhhhccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCC
Confidence 111 12699999999999999999999999999995 99999998 57
Q ss_pred CCCHHHHHHHhhcCCC--C--C-------CCCccccCcccChHHHHHh--h-----------------------------
Q 037048 117 DIDPLYEVSLREKKYA--S--G-------VSVLVTTPISFDNDYYKSL--R----------------------------- 154 (209)
Q Consensus 117 ~~~~~~~~~l~~~cp~--~--~-------~~~~~~tp~~FDn~Yy~~l--~----------------------------- 154 (209)
.+++.|+..|+..||. + . +..|+.||.+|||+||+|| .
T Consensus 270 ~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~ 349 (716)
T TIGR00198 270 EGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDP 349 (716)
T ss_pred CcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccc
Confidence 8999999999999984 1 1 1235789999999999999 2
Q ss_pred ------hccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhh--cCccC
Q 037048 155 ------GLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRS--KWVSA 199 (209)
Q Consensus 155 ------glL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~--~i~v~ 199 (209)
+||.|| +.|+++++ +|+.||.|+++|+++|++||+||+ .+|++
T Consensus 350 ~~~~~~~mL~SDlaL~~Dp~~r~--iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~ 403 (716)
T TIGR00198 350 NKKHNPIMLDADLALRFDPEFRK--ISRRFLREPDYFAEAFAKAWFKLTHRDMGPK 403 (716)
T ss_pred ccccccCccchhHHhccCccHHH--HHHHHhcCHHHHHHHHHHHHHHHcccccCch
Confidence 579999 58999999 999999999999999999999999 56665
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.7e-34 Score=270.42 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=154.2
Q ss_pred CccccccCCCCCCchhHHHHHHHHHHhhh--------hCCCce-EEccCCCceeccCCCcCCCCccc-------------
Q 037048 14 FTGEKTALPDFNSGRGFEVIDTIKCQLES--------SCPASV-VKQLGGPSWRVQLGRRDSTTASL------------- 71 (209)
Q Consensus 14 ~~~E~~~~~N~~~l~g~dvI~~iK~~le~--------~cpg~V-v~~~GGP~~~v~~GR~D~~~s~~------------- 71 (209)
+.+|+.++.|.++-++..+++.||.++.. +..|+| |+.+|||.|++..||.|...+..
T Consensus 112 f~pe~~w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~ 191 (726)
T PRK15061 112 FAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGG 191 (726)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccc
Confidence 34699999999666799999999999852 246666 99999999999999999865432
Q ss_pred --------------------------ccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHh-cccccCCC----------
Q 037048 72 --------------------------DLANSDLPGPDMSLGELITAFADTGLTAEEMAALS-GARTIGQA---------- 114 (209)
Q Consensus 72 --------------------------~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLs-GaHtiG~~---------- 114 (209)
..+ ..+|+|..++.+|++.|.+||||.+|||||+ ||||||++
T Consensus 192 ~~r~~~~~~l~~pl~a~~mgliyvnpegp-~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlg 270 (726)
T PRK15061 192 DERYSGERDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVG 270 (726)
T ss_pred ccccccccccccchhhhhccceecCCCCC-CCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccC
Confidence 111 2379999999999999999999999999995 99999998
Q ss_pred -CCCCCHHHHHHHh--hcCCCC--C-------CCCccccCcccChHHHHHh-h---------------------------
Q 037048 115 -PTDIDPLYEVSLR--EKKYAS--G-------VSVLVTTPISFDNDYYKSL-R--------------------------- 154 (209)
Q Consensus 115 -d~~~~~~~~~~l~--~~cp~~--~-------~~~~~~tp~~FDn~Yy~~l-~--------------------------- 154 (209)
+|.+++.++..|. +.||.+ . +..|+.||.+|||+||++| .
T Consensus 271 pdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~p 350 (726)
T PRK15061 271 PEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVP 350 (726)
T ss_pred CCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCC
Confidence 5778899998874 999972 1 1235689999999999999 2
Q ss_pred -----------hccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhh--cCccC
Q 037048 155 -----------GLLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRS--KWVSA 199 (209)
Q Consensus 155 -----------glL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~--~i~v~ 199 (209)
+||+|| +.|+.++. +|++||.|+++|+++|++||+||. .+||+
T Consensus 351 d~~~~~~~~~~~MLtSD~AL~~DP~~r~--iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~ 409 (726)
T PRK15061 351 DAHDPSKKHAPTMLTTDLALRFDPEYEK--ISRRFLENPEEFADAFARAWFKLTHRDMGPK 409 (726)
T ss_pred cccccccccCcccccccHHhhcCCcHHH--HHHHHhcCHHHHHHHHHHHHHHHcccCCCch
Confidence 689999 58999999 999999999999999999999994 47765
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.98 E-value=1.8e-33 Score=241.60 Aligned_cols=173 Identities=25% Similarity=0.285 Sum_probs=134.0
Q ss_pred CCceeEEccCCCCCccccc-cCCCCCCchhHHHHHHHHHHhhhhCCCce-------EEccCCCceeccCCCcCCCCcccc
Q 037048 1 GCDASVLLDDAATFTGEKT-ALPDFNSGRGFEVIDTIKCQLESSCPASV-------VKQLGGPSWRVQLGRRDSTTASLD 72 (209)
Q Consensus 1 GCDaSill~~~~~~~~E~~-~~~N~~~l~g~dvI~~iK~~le~~cpg~V-------v~~~GGP~~~v~~GR~D~~~s~~~ 72 (209)
||||||+|+.+ .+|+. ...|. ++++|++|+.+| -.|...+ |+++|||.|+|++||+|++++.+.
T Consensus 64 GcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~~----VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~ 135 (264)
T cd08201 64 GLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSPR----SSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA 135 (264)
T ss_pred CCCcceeecCC---ChhhccCchhh-ccccceeeccCc----cCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc
Confidence 89999999743 47888 45554 899999987764 3454433 889999999999999999988753
Q ss_pred cccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHhc-ccccCCCCCCCCHHHHHHHhhcCCC-C--CCCCccccCcccChH
Q 037048 73 LANSDLPGPDMSLGELITAFADTGLTAEEMAALSG-ARTIGQAPTDIDPLYEVSLREKKYA-S--GVSVLVTTPISFDND 148 (209)
Q Consensus 73 ~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLsG-aHtiG~~d~~~~~~~~~~l~~~cp~-~--~~~~~~~tp~~FDn~ 148 (209)
.||.|+.++++|++.|++|||+.+|||+|+| |||||+++..-.|.. .=|. . +..+|+.||.+|||+
T Consensus 136 ----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~------~~~g~~~~~~~p~dstp~~FDn~ 205 (264)
T cd08201 136 ----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEI------VPPGSVPDTVLQFFDTTIQFDNK 205 (264)
T ss_pred ----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhh------cCCccccCCCCCCCCCccccchH
Confidence 4999999999999999999999999999995 999999953322111 0000 1 123689999999999
Q ss_pred HHHHh-----hh--------ccccC---CCCCCCCchHHHhhccccHHHHHHHHHHHHHHhhc
Q 037048 149 YYKSL-----RG--------LLISD---FRGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSK 195 (209)
Q Consensus 149 Yy~~l-----~g--------lL~SD---~~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~ 195 (209)
||.++ .+ -++|| +.. +-.. .++.+| ++..|...++..+.||.+
T Consensus 206 ~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~-d~n~--t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 206 VVTEYLSGTTNNPLVVGPNNTTNSDLRIFSS-DGNV--TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHHHhcCCCCCceeecCCCCccchhhheec-CccH--HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 99998 23 35677 322 2233 778888 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.93 E-value=1.2e-26 Score=201.70 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=129.5
Q ss_pred ccccccCCCCC--CchhHHHHHHHHHHhhh--------------hCCCce-EEccCC-----CceeccCCCcCCCCcccc
Q 037048 15 TGEKTALPDFN--SGRGFEVIDTIKCQLES--------------SCPASV-VKQLGG-----PSWRVQLGRRDSTTASLD 72 (209)
Q Consensus 15 ~~E~~~~~N~~--~l~g~dvI~~iK~~le~--------------~cpg~V-v~~~GG-----P~~~v~~GR~D~~~s~~~ 72 (209)
.+|+.++.|.+ +-+...+++.||.++.. +..|+| |+.+|| |.|++.+||.|.......
T Consensus 61 ~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td 140 (297)
T cd08200 61 APQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTD 140 (297)
T ss_pred ccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCC
Confidence 46999999985 44689999999999851 134555 889999 999999999999865321
Q ss_pred cc--cCCCCCCC------------CCHHHHHHHHHHcCCCHHHHHHHhccc-ccCCCCCCCCHHHHHHHhhcCCCCCCCC
Q 037048 73 LA--NSDLPGPD------------MSLGELITAFADTGLTAEEMAALSGAR-TIGQAPTDIDPLYEVSLREKKYASGVSV 137 (209)
Q Consensus 73 ~~--~~~lP~p~------------~~~~~l~~~F~~~G~~~~dlVaLsGaH-tiG~~d~~~~~~~~~~l~~~cp~~~~~~ 137 (209)
.. ...+|.+. .....|++.|.++|||.+|||||+||| ++|..+.. +..+.
T Consensus 141 ~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~---------------s~~G~ 205 (297)
T cd08200 141 VESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGG---------------SKHGV 205 (297)
T ss_pred cccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCC---------------CCCCC
Confidence 10 11334332 234789999999999999999999998 57775311 23457
Q ss_pred ccccCcccChHHHHHh--h---------------------h-----ccccC---CCCCCCCchHHHhhcccc--HHHHHH
Q 037048 138 LVTTPISFDNDYYKSL--R---------------------G-----LLISD---FRGGSTASQPSANAYSPA--AEFFLR 184 (209)
Q Consensus 138 ~~~tp~~FDn~Yy~~l--~---------------------g-----lL~SD---~~d~~t~~~~~V~~ya~~--~~~F~~ 184 (209)
|+.+|.+|||.||+|| . | ++.+| ..|++.++ +|+.||.| +++||+
T Consensus 206 wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~--~ve~YA~dd~~~~F~~ 283 (297)
T cd08200 206 FTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRA--VAEVYASDDAQEKFVK 283 (297)
T ss_pred CcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHH--HHHHHhcccchhHHHH
Confidence 8889999999999999 1 1 15668 47888998 99999998 999999
Q ss_pred HHHHHHHHhhcCc
Q 037048 185 DLAFSLLQRSKWV 197 (209)
Q Consensus 185 ~Fa~Am~Km~~i~ 197 (209)
||++||.||.++.
T Consensus 284 DF~~A~~Klmeld 296 (297)
T cd08200 284 DFVAAWTKVMNLD 296 (297)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.87 E-value=1.7e-22 Score=192.11 Aligned_cols=165 Identities=21% Similarity=0.213 Sum_probs=127.6
Q ss_pred ccccccCCCC--CCchhHHHHHHHHHHhhhh--------------CCCce-EEcc---CC--CceeccCCCcCCCCcccc
Q 037048 15 TGEKTALPDF--NSGRGFEVIDTIKCQLESS--------------CPASV-VKQL---GG--PSWRVQLGRRDSTTASLD 72 (209)
Q Consensus 15 ~~E~~~~~N~--~~l~g~dvI~~iK~~le~~--------------cpg~V-v~~~---GG--P~~~v~~GR~D~~~s~~~ 72 (209)
.+|++++.|. ++-+..++++.||++.... ..|+| |+.+ || |.+++..||.|......
T Consensus 486 ~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t- 564 (726)
T PRK15061 486 APQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT- 564 (726)
T ss_pred ccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-
Confidence 3599999997 4457899999999998532 23444 7777 58 99999999999986532
Q ss_pred ccc---CCCCCCC------------CCHHHHHHHHHHcCCCHHHHHHHhccc-ccCCCCCCCCHHHHHHHhhcCCCCCCC
Q 037048 73 LAN---SDLPGPD------------MSLGELITAFADTGLTAEEMAALSGAR-TIGQAPTDIDPLYEVSLREKKYASGVS 136 (209)
Q Consensus 73 ~~~---~~lP~p~------------~~~~~l~~~F~~~G~~~~dlVaLsGaH-tiG~~d~~~~~~~~~~l~~~cp~~~~~ 136 (209)
+++ ..+|... .....|++.|.++|||..|||||+||| ++|..+.. +..+
T Consensus 565 d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~---------------S~~G 629 (726)
T PRK15061 565 DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGG---------------SKHG 629 (726)
T ss_pred CcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCC---------------CCCC
Confidence 222 2456432 234889999999999999999999998 56664211 2245
Q ss_pred CccccCcccChHHHHHh--h-----------h-------------c--cccC---CCCCCCCchHHHhhcccc--HHHHH
Q 037048 137 VLVTTPISFDNDYYKSL--R-----------G-------------L--LISD---FRGGSTASQPSANAYSPA--AEFFL 183 (209)
Q Consensus 137 ~~~~tp~~FDn~Yy~~l--~-----------g-------------l--L~SD---~~d~~t~~~~~V~~ya~~--~~~F~ 183 (209)
.|+.+|.+|||.||+|| . + + +.+| ..|+..++ +|+.||.| +++||
T Consensus 630 ~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa--~aEvYA~dd~~~kF~ 707 (726)
T PRK15061 630 VFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRA--LAEVYASDDAKEKFV 707 (726)
T ss_pred CCcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHH--HHHHHhcccchhHHH
Confidence 68889999999999999 1 1 1 3567 37888888 99999999 99999
Q ss_pred HHHHHHHHHhhcCc
Q 037048 184 RDLAFSLLQRSKWV 197 (209)
Q Consensus 184 ~~Fa~Am~Km~~i~ 197 (209)
+||++|+.|+.+++
T Consensus 708 ~DF~~Aw~Kvmeld 721 (726)
T PRK15061 708 RDFVAAWTKVMNLD 721 (726)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999986
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.86 E-value=2.3e-22 Score=191.94 Aligned_cols=166 Identities=21% Similarity=0.197 Sum_probs=128.3
Q ss_pred ccccccCCC--CCCchhHHHHHHHHHHhh--h-------hCCCce-EEcc---CCC--ceeccCCCcCCCCcccccccCC
Q 037048 15 TGEKTALPD--FNSGRGFEVIDTIKCQLE--S-------SCPASV-VKQL---GGP--SWRVQLGRRDSTTASLDLANSD 77 (209)
Q Consensus 15 ~~E~~~~~N--~~~l~g~dvI~~iK~~le--~-------~cpg~V-v~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~ 77 (209)
.+|++++.| .++.+...+++.||+++. + ++.|+| |+.+ ||| .+++.+||.|...... ++++.
T Consensus 479 ~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~ 557 (716)
T TIGR00198 479 EPQKNWPVNEPTRLAKVLAVLEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESF 557 (716)
T ss_pred chhcCcccCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-Ccccc
Confidence 359999999 544578999999999986 2 245666 7777 898 5899999999986532 22222
Q ss_pred CC---C------------CCCCHHHHHHHHHHcCCCHHHHHHHhcc-cccCCCCCCCCHHHHHHHhhcCCCCCCCCcccc
Q 037048 78 LP---G------------PDMSLGELITAFADTGLTAEEMAALSGA-RTIGQAPTDIDPLYEVSLREKKYASGVSVLVTT 141 (209)
Q Consensus 78 lP---~------------p~~~~~~l~~~F~~~G~~~~dlVaLsGa-HtiG~~d~~~~~~~~~~l~~~cp~~~~~~~~~t 141 (209)
.| . .......|++.|.++|||..|||||+|| |++|..+.. ...+.|+.+
T Consensus 558 ~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~---------------s~~G~~T~~ 622 (716)
T TIGR00198 558 TPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGG---------------SKHGVFTDR 622 (716)
T ss_pred ccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCC---------------CCCCCCcCC
Confidence 22 1 1223567899999999999999999999 599997421 124568889
Q ss_pred CcccChHHHHHh--h---------------------h---cc--ccC---CCCCCCCchHHHhhccccH--HHHHHHHHH
Q 037048 142 PISFDNDYYKSL--R---------------------G---LL--ISD---FRGGSTASQPSANAYSPAA--EFFLRDLAF 188 (209)
Q Consensus 142 p~~FDn~Yy~~l--~---------------------g---lL--~SD---~~d~~t~~~~~V~~ya~~~--~~F~~~Fa~ 188 (209)
|.+|||.||+|| . | ++ .+| ..|+..++ +|+.||.|+ ++||+||++
T Consensus 623 p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra--~aE~YA~dd~~~~F~~DF~~ 700 (716)
T TIGR00198 623 VGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRA--VAEVYAQDDAREKFVKDFVA 700 (716)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHH--HHHHHhcccccchHHHHHHH
Confidence 999999999999 1 1 22 567 37888998 999999997 899999999
Q ss_pred HHHHhhcCcc
Q 037048 189 SLLQRSKWVS 198 (209)
Q Consensus 189 Am~Km~~i~v 198 (209)
|+.|+.+++-
T Consensus 701 Aw~Klm~ldr 710 (716)
T TIGR00198 701 AWTKVMNLDR 710 (716)
T ss_pred HHHHHHhCCC
Confidence 9999999863
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.9e-20 Score=169.21 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=143.3
Q ss_pred CccccccCCCCCCchhHHHHHHHHHHhhhh--------CCCce-EEccCCCceeccCCCcCCCCccc-------------
Q 037048 14 FTGEKTALPDFNSGRGFEVIDTIKCQLESS--------CPASV-VKQLGGPSWRVQLGRRDSTTASL------------- 71 (209)
Q Consensus 14 ~~~E~~~~~N~~~l~g~dvI~~iK~~le~~--------cpg~V-v~~~GGP~~~v~~GR~D~~~s~~------------- 71 (209)
|.++..+|.|.|+-+++.+++.||.++... ..|+| ++..|+++|.+..||.|-..+..
T Consensus 125 FaPlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d 204 (730)
T COG0376 125 FAPLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGD 204 (730)
T ss_pred cccccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccccccc
Confidence 567888999997779999999999999742 45667 88999999999999999877654
Q ss_pred -------------------------ccccCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHh-cccccCCCCCCCCHHH---
Q 037048 72 -------------------------DLANSDLPGPDMSLGELITAFADTGLTAEEMAALS-GARTIGQAPTDIDPLY--- 122 (209)
Q Consensus 72 -------------------------~~~~~~lP~p~~~~~~l~~~F~~~G~~~~dlVaLs-GaHtiG~~d~~~~~~~--- 122 (209)
..+ ...|+|-.+..+++..|++|+++.+|.|||+ |+||+|+++..-++.+
T Consensus 205 ~Ry~~~~~Le~PlaavqMGLIYVNPEGp-ng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ 283 (730)
T COG0376 205 ERYSGDRDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGP 283 (730)
T ss_pred ccccccccccCchhhheeeeEEeCCCCC-CCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCC
Confidence 222 4689999999999999999999999999997 7999999942211111
Q ss_pred ------HH----HHhhcCCC--CC-------CCCccccCcccChHHHHHh--------h---h-----------------
Q 037048 123 ------EV----SLREKKYA--SG-------VSVLVTTPISFDNDYYKSL--------R---G----------------- 155 (209)
Q Consensus 123 ------~~----~l~~~cp~--~~-------~~~~~~tp~~FDn~Yy~~l--------~---g----------------- 155 (209)
.+ .+.+.|.. +. +..|..||++|||+||.+| + |
T Consensus 284 ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~ 363 (730)
T COG0376 284 EPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDA 363 (730)
T ss_pred CccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCC
Confidence 11 13444543 21 2346889999999999999 1 1
Q ss_pred ----------ccccC--C-CCCCCCchHHHhhccccHHHHHHHHHHHHHHhhc
Q 037048 156 ----------LLISD--F-RGGSTASQPSANAYSPAAEFFLRDLAFSLLQRSK 195 (209)
Q Consensus 156 ----------lL~SD--~-~d~~t~~~~~V~~ya~~~~~F~~~Fa~Am~Km~~ 195 (209)
||.+| | -||.... +.+.|..||+.|.+.|++|+.||..
T Consensus 364 ~dp~~~~~p~MlttDlaLr~DP~Y~k--Is~rf~e~pd~F~~~FArAWfKLtH 414 (730)
T COG0376 364 HDPSKKHGPMMLTTDLALRFDPEYEK--ISRRFLEDPDEFADAFARAWFKLTH 414 (730)
T ss_pred CCcccccCceeeccchhhhcChHHHH--HHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 78888 3 5888888 9999999999999999999999986
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0003 Score=66.20 Aligned_cols=163 Identities=21% Similarity=0.254 Sum_probs=98.5
Q ss_pred cccccCCCCC--CchhHHHHHHHHHHhhhhC--CCceEEccC-----------CC--ceeccCCCcCCCCcccccccC-C
Q 037048 16 GEKTALPDFN--SGRGFEVIDTIKCQLESSC--PASVVKQLG-----------GP--SWRVQLGRRDSTTASLDLANS-D 77 (209)
Q Consensus 16 ~E~~~~~N~~--~l~g~dvI~~iK~~le~~c--pg~Vv~~~G-----------GP--~~~v~~GR~D~~~s~~~~~~~-~ 77 (209)
+.+++..|.. .-+-+.+++.|...+.+.. ... |++.| |- .+++..||.|+....-. +.+ .
T Consensus 497 PqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADl-IVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~ 574 (730)
T COG0376 497 PQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADL-IVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFA 574 (730)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHh-eeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhh
Confidence 4688888863 1245778888888876421 111 33332 33 46788999998654321 111 1
Q ss_pred CCCC--------------CCCHHHHHHHHHHcCCCHHHHHHHhcccc-cCCCCCCCCHHHHHHHhhcCCCCCCCCccccC
Q 037048 78 LPGP--------------DMSLGELITAFADTGLTAEEMAALSGART-IGQAPTDIDPLYEVSLREKKYASGVSVLVTTP 142 (209)
Q Consensus 78 lP~p--------------~~~~~~l~~~F~~~G~~~~dlVaLsGaHt-iG~~d~~~~~~~~~~l~~~cp~~~~~~~~~tp 142 (209)
+-.| -..-.-|++.=.-.+|+.-||.+|.|+-- +|.-. .......++..|
T Consensus 575 ~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~---------------g~s~~GVfT~~p 639 (730)
T COG0376 575 VLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANY---------------GGSKHGVFTDRP 639 (730)
T ss_pred cccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCC---------------CCCccceeccCc
Confidence 1111 12235567777778999999999987653 23220 000122346788
Q ss_pred cccChHHHHHh--hh-----------cc---------------ccC--C-CCCCCCchHHHhhcccc--HHHHHHHHHHH
Q 037048 143 ISFDNDYYKSL--RG-----------LL---------------ISD--F-RGGSTASQPSANAYSPA--AEFFLRDLAFS 189 (209)
Q Consensus 143 ~~FDn~Yy~~l--~g-----------lL---------------~SD--~-~d~~t~~~~~V~~ya~~--~~~F~~~Fa~A 189 (209)
..+.|.||.|| .+ ++ ..| + ++...++ +.+-||.+ ++.|.+||++|
T Consensus 640 g~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA--~aEVYa~dda~ekFv~DFvaa 717 (730)
T COG0376 640 GVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRA--LAEVYASDDAKEKFVKDFVAA 717 (730)
T ss_pred ccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHH--HHHHHhccchHHHHHHHHHHH
Confidence 99999999998 22 11 111 1 2233344 77888764 78899999999
Q ss_pred HHHhhcCc
Q 037048 190 LLQRSKWV 197 (209)
Q Consensus 190 m~Km~~i~ 197 (209)
+.|..++.
T Consensus 718 w~kVMn~D 725 (730)
T COG0376 718 WTKVMNLD 725 (730)
T ss_pred HHHHhccc
Confidence 99988764
No 19
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=75.79 E-value=2.8 Score=32.96 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCHHHH-HHHhcccccCCC
Q 037048 78 LPGPDMSLGELITAFADTGLTAEEM-AALSGARTIGQA 114 (209)
Q Consensus 78 lP~p~~~~~~l~~~F~~~G~~~~dl-VaLsGaHtiG~~ 114 (209)
+-....++.+.+-.|++||+++.++ |.|--+|-||++
T Consensus 26 lK~~~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~ 63 (151)
T KOG0400|consen 26 LKLTADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQV 63 (151)
T ss_pred HhcCHHHHHHHHHHHHHcCCChhHceeeeecccCcchh
Confidence 3333456788899999999999988 777899999998
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=72.92 E-value=4.9 Score=36.31 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=50.1
Q ss_pred EccCCCceeccCCCcCCCCcccccccCCCCC---CCCCHHHHHHHHHHcCC----------CHHHHHHHhcccccCCCCC
Q 037048 50 KQLGGPSWRVQLGRRDSTTASLDLANSDLPG---PDMSLGELITAFADTGL----------TAEEMAALSGARTIGQAPT 116 (209)
Q Consensus 50 ~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~G~----------~~~dlVaLsGaHtiG~~d~ 116 (209)
..+|-..+..+.||-+.+.-.+.......+. .-..+.++..+|+..|+ +.+++..|.|+|.+
T Consensus 178 aeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l----- 252 (333)
T PTZ00411 178 AQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL----- 252 (333)
T ss_pred HHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE-----
Confidence 3357788999999986543222111111111 12357888899998886 45888899999975
Q ss_pred CCCHHHHHHHhhc
Q 037048 117 DIDPLYEVSLREK 129 (209)
Q Consensus 117 ~~~~~~~~~l~~~ 129 (209)
+++|....+|...
T Consensus 253 Ti~p~ll~~L~~~ 265 (333)
T PTZ00411 253 TISPKLLEELANT 265 (333)
T ss_pred eCCHHHHHHHHhC
Confidence 6888898888753
No 21
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=72.38 E-value=3.4 Score=29.67 Aligned_cols=19 Identities=0% Similarity=-0.130 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhcCccC
Q 037048 181 FFLRDLAFSLLQRSKWVSA 199 (209)
Q Consensus 181 ~F~~~Fa~Am~Km~~i~v~ 199 (209)
.....|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999864
No 22
>PRK12346 transaldolase A; Provisional
Probab=65.45 E-value=13 Score=33.46 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=51.6
Q ss_pred EEccCCCceeccCCCcCCCCcccccccCCCC----CCCCCHHHHHHHHHHcCC----------CHHHHHHHhcccccCCC
Q 037048 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLP----GPDMSLGELITAFADTGL----------TAEEMAALSGARTIGQA 114 (209)
Q Consensus 49 v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~G~----------~~~dlVaLsGaHtiG~~ 114 (209)
...+|-..+..+.||-|-+.-...... .++ +.-..+.++..+|+..|+ +.+++.+|.|+|.+
T Consensus 166 aa~AGa~~ISPfVgRi~d~~~~~~~~~-~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l--- 241 (316)
T PRK12346 166 CAEAGVFLISPFVGRIYDWYQARKPMD-PYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL--- 241 (316)
T ss_pred HHHcCCCEEEecccHHHHhhhhccccc-cccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE---
Confidence 334588889999999886532211111 111 122457888999988885 45788899999974
Q ss_pred CCCCCHHHHHHHhhc
Q 037048 115 PTDIDPLYEVSLREK 129 (209)
Q Consensus 115 d~~~~~~~~~~l~~~ 129 (209)
+|+|....+|...
T Consensus 242 --Ti~p~ll~~L~~~ 254 (316)
T PRK12346 242 --TISPNLLKELQES 254 (316)
T ss_pred --eCCHHHHHHHHhc
Confidence 7889999998754
No 23
>PRK05269 transaldolase B; Provisional
Probab=52.58 E-value=27 Score=31.32 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=50.6
Q ss_pred EEccCCCceeccCCCcCCCCcccccccC---CCCCCCCCHHHHHHHHHHcCCC----------HHHHHHHhcccccCCCC
Q 037048 49 VKQLGGPSWRVQLGRRDSTTASLDLANS---DLPGPDMSLGELITAFADTGLT----------AEEMAALSGARTIGQAP 115 (209)
Q Consensus 49 v~~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~G~~----------~~dlVaLsGaHtiG~~d 115 (209)
...+|...+..+.||-|.+.-....... .--+.-..+.++..+|+..|+. ..++..|.|+|++
T Consensus 167 aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v---- 242 (318)
T PRK05269 167 CAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL---- 242 (318)
T ss_pred HHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE----
Confidence 3345888899999998765221110000 0112334688899999988874 5677888899875
Q ss_pred CCCCHHHHHHHhhc
Q 037048 116 TDIDPLYEVSLREK 129 (209)
Q Consensus 116 ~~~~~~~~~~l~~~ 129 (209)
+|+|....+|...
T Consensus 243 -Ti~p~ll~~l~~~ 255 (318)
T PRK05269 243 -TISPALLEELAAS 255 (318)
T ss_pred -ECCHHHHHHHHhc
Confidence 6888999988843
No 24
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=51.43 E-value=33 Score=30.80 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=51.0
Q ss_pred EEccCCCceeccCCCcCCCCcccccccC---CCCCCCCCHHHHHHHHHHcCC----------CHHHHHHHhcccccCCCC
Q 037048 49 VKQLGGPSWRVQLGRRDSTTASLDLANS---DLPGPDMSLGELITAFADTGL----------TAEEMAALSGARTIGQAP 115 (209)
Q Consensus 49 v~~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~G~----------~~~dlVaLsGaHtiG~~d 115 (209)
+..+|-..+..+.||-+-+.-....... ..-+.-..+.++..+|+..|+ +.+++.+|.|+|.+
T Consensus 165 aa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~---- 240 (317)
T TIGR00874 165 CAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL---- 240 (317)
T ss_pred HHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE----
Confidence 3446888899999998664222110000 111233567888999999887 45788889999864
Q ss_pred CCCCHHHHHHHhhc
Q 037048 116 TDIDPLYEVSLREK 129 (209)
Q Consensus 116 ~~~~~~~~~~l~~~ 129 (209)
+|+|....+|...
T Consensus 241 -Ti~p~ll~~L~~~ 253 (317)
T TIGR00874 241 -TISPALLDELKES 253 (317)
T ss_pred -eCCHHHHHHHHhC
Confidence 6888999988753
No 25
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=50.23 E-value=43 Score=30.91 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=50.0
Q ss_pred EccCCCceeccCCCcCCCCcccccccCCCCCCC----CCHHHHHHHHHHcCC----------CHHHHHHHhcccccCCCC
Q 037048 50 KQLGGPSWRVQLGRRDSTTASLDLANSDLPGPD----MSLGELITAFADTGL----------TAEEMAALSGARTIGQAP 115 (209)
Q Consensus 50 ~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~G~----------~~~dlVaLsGaHtiG~~d 115 (209)
..+|-..+..+.||.|-+.-.....+ .+|... ..+.++..+|+..|+ +.+++..|.|+|.+
T Consensus 172 aeAGa~~ISPfVgRi~dw~~~~~g~~-~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~---- 246 (391)
T PRK12309 172 AEAGVTLISPFVGRILDWYKKETGRD-SYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL---- 246 (391)
T ss_pred HHcCCCEEEeecchhhhhhhhccCCC-ccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee----
Confidence 33588889999999877443221111 133222 357888888988775 35778888898864
Q ss_pred CCCCHHHHHHHhh
Q 037048 116 TDIDPLYEVSLRE 128 (209)
Q Consensus 116 ~~~~~~~~~~l~~ 128 (209)
+|+|....+|..
T Consensus 247 -Ti~p~ll~~L~~ 258 (391)
T PRK12309 247 -TISPKLLEQLRS 258 (391)
T ss_pred -eCCHHHHHHHHh
Confidence 788999998876
No 26
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=48.73 E-value=14 Score=30.90 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhhhhCCCce--------EEccCCCceeccCCCcCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCC-
Q 037048 28 RGFEVIDTIKCQLESSCPASV--------VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLT- 98 (209)
Q Consensus 28 ~g~dvI~~iK~~le~~cpg~V--------v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~- 98 (209)
.|+++|..++++=-..+.+.| ...+|..++..++||.|-..- ++..-+.++.+.++..|+.
T Consensus 89 ~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~----------dg~~~i~~i~~~~~~~~~~t 158 (211)
T cd00956 89 DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGG----------DGMELIREIRTIFDNYGFDT 158 (211)
T ss_pred hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCC----------CHHHHHHHHHHHHHHcCCCc
Confidence 467777666655111223334 444677778889999876421 2345578889999988865
Q ss_pred ---------HHHHHH--HhcccccCCCCCCCCHHHHHHHh
Q 037048 99 ---------AEEMAA--LSGARTIGQAPTDIDPLYEVSLR 127 (209)
Q Consensus 99 ---------~~dlVa--LsGaHtiG~~d~~~~~~~~~~l~ 127 (209)
++|++. ++|+|.+ ++++...++|.
T Consensus 159 kil~As~r~~~ei~~a~~~Gad~v-----Tv~~~vl~~l~ 193 (211)
T cd00956 159 KILAASIRNPQHVIEAALAGADAI-----TLPPDVLEQLL 193 (211)
T ss_pred eEEecccCCHHHHHHHHHcCCCEE-----EeCHHHHHHHh
Confidence 566664 4688863 56666666665
No 27
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=41.67 E-value=32 Score=30.82 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=48.7
Q ss_pred EccCCCceeccCCCcCCCCcccccccCCCC----CCCCCHHHHHHHHHHcCCC----------HHHHHHHhcccccCCCC
Q 037048 50 KQLGGPSWRVQLGRRDSTTASLDLANSDLP----GPDMSLGELITAFADTGLT----------AEEMAALSGARTIGQAP 115 (209)
Q Consensus 50 ~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~G~~----------~~dlVaLsGaHtiG~~d 115 (209)
..+|-..+..+.||-|-+.-...... ..+ +.-..+.++..+|+..|+. ..++.+|.|+|.
T Consensus 166 a~AGa~~ISPfVgRi~d~~~~~~~~~-~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d~----- 239 (313)
T cd00957 166 AEAGVTLISPFVGRILDWYKKHSGDK-AYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCDY----- 239 (313)
T ss_pred HHcCCCEEEeecchHHHhhhhccccc-cCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCe-----
Confidence 33577889999999876532111000 111 1224578888999988874 577788888885
Q ss_pred CCCCHHHHHHHhh
Q 037048 116 TDIDPLYEVSLRE 128 (209)
Q Consensus 116 ~~~~~~~~~~l~~ 128 (209)
-+++|....+|..
T Consensus 240 ~Ti~p~ll~~L~~ 252 (313)
T cd00957 240 LTISPALLEELKN 252 (313)
T ss_pred EEcCHHHHHHHHh
Confidence 4788888888874
No 28
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=33.39 E-value=24 Score=25.60 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.2
Q ss_pred ccccHHHHHHHHHHHHHHhhc
Q 037048 175 YSPAAEFFLRDLAFSLLQRSK 195 (209)
Q Consensus 175 ya~~~~~F~~~Fa~Am~Km~~ 195 (209)
|-..|..||+.|+..+.|-+.
T Consensus 38 Y~~~QskFFe~~A~~~tkR~~ 58 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKRGL 58 (90)
T ss_pred CChHHHHHHHHHhhhhhHHHH
Confidence 667899999999998877543
No 29
>PLN00197 beta-amylase; Provisional
Probab=30.31 E-value=73 Score=30.90 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=23.1
Q ss_pred HHhhccccHHHHHHHHHHHHHHh-----hcCccCCCCCCCCccC
Q 037048 171 SANAYSPAAEFFLRDLAFSLLQR-----SKWVSAHSRGLGGEIQ 209 (209)
Q Consensus 171 ~V~~ya~~~~~F~~~Fa~Am~Km-----~~i~v~~~tg~~GeIR 209 (209)
-|+.|.. |++.|...|.-+ ..|.|- -|..||.|
T Consensus 244 piq~Y~D----FM~SFr~~F~~~l~~~I~eI~VG--lGP~GELR 281 (573)
T PLN00197 244 PVQCYAD----FMRAFRDNFKHLLGDTIVEIQVG--MGPAGELR 281 (573)
T ss_pred HHHHHHH----HHHHHHHHHHHHhcCceeEEEec--cCcCcccc
Confidence 3566643 777777777764 456666 78999988
No 30
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=27.20 E-value=66 Score=27.74 Aligned_cols=62 Identities=13% Similarity=-0.054 Sum_probs=36.3
Q ss_pred EEccCCCceeccCCCcCCCCcccccccCCCCC---CCCCHHHHHHHHHHcCCC----------HHHHHHHhcccc
Q 037048 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPG---PDMSLGELITAFADTGLT----------AEEMAALSGART 110 (209)
Q Consensus 49 v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~G~~----------~~dlVaLsGaHt 110 (209)
...+|...+.++.||.|...-......+.=|. .-..+.++.+.|+..|.. ..++..|.|+|+
T Consensus 156 aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS~r~~~~v~~l~G~d~ 230 (252)
T cd00439 156 VADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCDT 230 (252)
T ss_pred HHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEeeCCHHHHHHhhCCCe
Confidence 34467788999999998765432211110011 112345777777776663 456666667775
No 31
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=26.02 E-value=68 Score=22.93 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcccc
Q 037048 86 GELITAFADTGLTAEEMAALSGART 110 (209)
Q Consensus 86 ~~l~~~F~~~G~~~~dlVaLsGaHt 110 (209)
+.|-..|.+.||+..||-.|+-+.-
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~~ 35 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEADG 35 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHGG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhccC
Confidence 5688899999999999999986653
No 32
>PLN02705 beta-amylase
Probab=21.14 E-value=85 Score=30.95 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=23.3
Q ss_pred HHhhccccHHHHHHHHHHHHHHh------hcCccCCCCCCCCccC
Q 037048 171 SANAYSPAAEFFLRDLAFSLLQR------SKWVSAHSRGLGGEIQ 209 (209)
Q Consensus 171 ~V~~ya~~~~~F~~~Fa~Am~Km------~~i~v~~~tg~~GeIR 209 (209)
-++.|. .|++.|...|.-+ ..|.|- -|..||.|
T Consensus 385 plq~Y~----DFM~SFr~~F~~fl~~g~I~eI~VG--LGP~GELR 423 (681)
T PLN02705 385 GIEVYF----DFMRSFRSEFDDLFVEGLITAVEIG--LGASGELK 423 (681)
T ss_pred HHHHHH----HHHHHHHHHHHHhccCCceeEEEec--cCCCcccc
Confidence 556664 3788888777774 346666 78999988
No 33
>PHA03388 ORF1_granulin Granulin; Provisional
Probab=21.02 E-value=42 Score=28.44 Aligned_cols=14 Identities=43% Similarity=0.396 Sum_probs=11.9
Q ss_pred ccCcccChHHHHHh
Q 037048 140 TTPISFDNDYYKSL 153 (209)
Q Consensus 140 ~tp~~FDn~Yy~~l 153 (209)
.+..++||.|||+|
T Consensus 14 g~tyvyDNkyyknL 27 (248)
T PHA03388 14 GTTCVIDNKHLKSL 27 (248)
T ss_pred CceEEEccHHHHHH
Confidence 35578999999999
No 34
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=20.86 E-value=1.1e+02 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.541 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 037048 86 GELITAFADTGLTAEEMAAL 105 (209)
Q Consensus 86 ~~l~~~F~~~G~~~~dlVaL 105 (209)
.++++.|..|||..+-+|..
T Consensus 10 ~~lVd~F~~mGF~~dkVvev 29 (55)
T PF09288_consen 10 KDLVDQFENMGFERDKVVEV 29 (55)
T ss_dssp HHHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHH
Confidence 57899999999998777654
No 35
>PLN02161 beta-amylase
Probab=20.79 E-value=91 Score=30.01 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHhhccccHHHHHHHHHHHHHHhh-----cCccCCCCCCCCccC
Q 037048 171 SANAYSPAAEFFLRDLAFSLLQRS-----KWVSAHSRGLGGEIQ 209 (209)
Q Consensus 171 ~V~~ya~~~~~F~~~Fa~Am~Km~-----~i~v~~~tg~~GeIR 209 (209)
-++.|.. |++.|...|.-+- +|.|- -|..||.|
T Consensus 234 plq~Y~D----fm~SFr~~F~~~~~~~I~eI~VG--lGP~GELR 271 (531)
T PLN02161 234 AVQCYED----FMLSFSTKFEPYIGNVIEEISIG--LGPSGELR 271 (531)
T ss_pred HHHHHHH----HHHHHHHHHHHHhcCceEEEEec--cccCcccc
Confidence 5566743 7777777777653 56676 78999988
No 36
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=20.09 E-value=62 Score=27.53 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=39.6
Q ss_pred EEccCCCceeccCCCcCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCHH----------HHH--HHhcccccCCCCC
Q 037048 49 VKQLGGPSWRVQLGRRDSTTASLDLANSDLPGPDMSLGELITAFADTGLTAE----------EMA--ALSGARTIGQAPT 116 (209)
Q Consensus 49 v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~----------dlV--aLsGaHtiG~~d~ 116 (209)
...+|.-++..+.||.|-..-. |..-+.++...|...+++.+ +++ +++|+|+ -
T Consensus 122 Aa~aGa~yvsPyvgRi~d~g~D----------~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~-----v 186 (222)
T PRK12656 122 AIEAGADYLAPYYNRMENLNID----------SNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQA-----V 186 (222)
T ss_pred HHHCCCCEEecccchhhhcCCC----------HHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCE-----E
Confidence 3446887889999998853221 12346778888888887653 333 3467775 2
Q ss_pred CCCHHHHHHHh
Q 037048 117 DIDPLYEVSLR 127 (209)
Q Consensus 117 ~~~~~~~~~l~ 127 (209)
+++|....+|-
T Consensus 187 Tvp~~vl~~l~ 197 (222)
T PRK12656 187 TAGPDVFEAAF 197 (222)
T ss_pred ecCHHHHHHHh
Confidence 45555555543
Done!