Your job contains 1 sequence.
>037049
SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY
FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK
VTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHV
KSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE
EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGR
LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL
DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSL
FMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLE
EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEP
VEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQL
EGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNV
SMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLV
RNVAFEAQRKI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037049
(731 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 1419 1.2e-199 2
TAIR|locus:4515103541 - symbol:AT5G08695 species:3702 "Ar... 1185 2.3e-146 2
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 771 1.4e-112 2
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 746 5.7e-111 3
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 701 2.2e-109 3
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 730 1.2e-106 2
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 706 2.4e-106 3
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 700 4.5e-105 2
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 737 7.1e-103 3
FB|FBgn0036018 - symbol:CG3335 species:7227 "Drosophila m... 679 6.8e-98 2
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 717 2.0e-96 2
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 512 3.0e-91 3
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 592 3.2e-91 2
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 771 1.9e-83 2
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 497 3.0e-76 3
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 738 4.6e-73 1
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 510 2.3e-72 3
RGD|1308928 - symbol:Rbm19 "RNA binding motif protein 19"... 343 6.7e-38 2
TAIR|locus:2166359 - symbol:AT5G05720 species:3702 "Arabi... 284 2.5e-29 2
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 136 1.5e-20 4
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 132 5.4e-17 3
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 173 2.3e-16 2
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 136 2.7e-16 3
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 128 3.0e-16 3
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 151 1.4e-15 2
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 156 2.1e-15 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 128 2.8e-15 3
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 139 5.6e-15 3
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 121 7.7e-15 3
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 120 7.9e-15 3
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 139 1.1e-14 3
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 127 1.1e-14 3
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 130 1.5e-14 3
SGD|S000005964 - symbol:NOP4 "Nucleolar protein" species:... 160 2.2e-14 3
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 145 2.7e-14 3
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 136 4.9e-14 3
UNIPROTKB|F1PIL7 - symbol:MYEF2 "Uncharacterized protein"... 113 5.5e-14 3
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 166 6.7e-14 2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 120 7.6e-14 3
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 120 8.8e-14 3
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 120 1.2e-13 3
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 139 1.3e-13 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 133 1.5e-13 3
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 120 1.5e-13 3
WB|WBGene00011043 - symbol:rbm-28 species:6239 "Caenorhab... 149 1.6e-13 3
UNIPROTKB|F1SN63 - symbol:MYEF2 "Uncharacterized protein"... 113 1.9e-13 3
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 138 2.1e-13 3
UNIPROTKB|A6QQP0 - symbol:MYEF2 "MYEF2 protein" species:9... 113 2.1e-13 3
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 116 2.2e-13 3
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 116 2.2e-13 3
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 120 2.5e-13 3
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 136 2.7e-13 3
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 149 2.9e-13 3
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 114 3.3e-13 3
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 125 3.3e-13 3
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 141 3.4e-13 3
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 117 3.4e-13 3
RGD|628862 - symbol:Rbm45 "RNA binding motif protein 45" ... 155 3.8e-13 3
UNIPROTKB|Q8CFD1 - symbol:Rbm45 "RNA-binding protein 45" ... 155 3.8e-13 3
UNIPROTKB|D4AB08 - symbol:Myef2 "Protein Myef2" species:1... 116 3.9e-13 3
UNIPROTKB|D4A1T2 - symbol:Myef2 "Protein Myef2" species:1... 116 4.1e-13 3
UNIPROTKB|F1PIK6 - symbol:MYEF2 "Uncharacterized protein"... 113 4.2e-13 3
RGD|1306547 - symbol:Myef2 "myelin expression factor 2" s... 116 4.6e-13 3
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 114 5.4e-13 3
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 141 5.4e-13 2
UNIPROTKB|Q9P2K5 - symbol:MYEF2 "Myelin expression factor... 113 6.5e-13 3
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 140 6.9e-13 2
CGD|CAL0002736 - symbol:NOP4 species:5476 "Candida albica... 152 8.9e-13 3
UNIPROTKB|Q59KZ0 - symbol:NOP4 "Putative uncharacterized ... 152 8.9e-13 3
ZFIN|ZDB-GENE-051120-114 - symbol:myef2 "myelin expressio... 108 9.4e-13 3
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 149 1.1e-12 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 103 1.6e-12 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 103 1.6e-12 3
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 107 2.3e-12 3
UNIPROTKB|F1NS10 - symbol:HNRNPM "Uncharacterized protein... 108 2.4e-12 3
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 107 2.4e-12 3
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 107 2.4e-12 3
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 139 3.1e-12 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 130 3.3e-12 3
DICTYBASE|DDB_G0270156 - symbol:DDB_G0270156 "RNA-binding... 171 3.4e-12 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 138 3.7e-12 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 134 3.7e-12 2
UNIPROTKB|F1NEX8 - symbol:RBM45 "Uncharacterized protein"... 157 3.9e-12 3
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 145 3.9e-12 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 138 4.2e-12 2
UNIPROTKB|Q8IUH3 - symbol:RBM45 "RNA-binding protein 45" ... 151 4.3e-12 3
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 173 4.7e-12 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 173 4.7e-12 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 136 5.0e-12 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 131 5.5e-12 3
UNIPROTKB|Q5ZL80 - symbol:HNRNPM "Uncharacterized protein... 108 5.9e-12 3
MGI|MGI:1926465 - symbol:Hnrnpm "heterogeneous nuclear ri... 105 6.8e-12 3
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 120 7.1e-12 3
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi... 171 7.7e-12 1
ZFIN|ZDB-GENE-030131-6898 - symbol:hnrnpm "heterogeneous ... 107 7.8e-12 3
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 125 8.2e-12 3
UNIPROTKB|F1MY44 - symbol:HNRNPM "Uncharacterized protein... 104 8.8e-12 3
UNIPROTKB|P52272 - symbol:HNRNPM "Heterogeneous nuclear r... 104 8.8e-12 3
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 147 8.8e-12 2
UNIPROTKB|Q9NW13 - symbol:RBM28 "RNA-binding protein 28" ... 131 8.9e-12 2
WARNING: Descriptions of 1133 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 1419 (504.6 bits), Expect = 1.2e-199, Sum P(2) = 1.2e-199
Identities = 284/465 (61%), Positives = 354/465 (76%)
Query: 268 GVGEEDANG--EIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNV 325
GVG++D E+ G + SK V +VL++GRLFVRNLPYTATE+EL EHFS FG +
Sbjct: 261 GVGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKI 320
Query: 326 SEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQE 385
SEVH+V+DK+TKRS+GIAY+LY IPE A+RA+E LDNS FQGRLLH++PA+H+++SDKQ
Sbjct: 321 SEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQV 380
Query: 386 LHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDR 445
N TS KT KQ KASEA G+TKAWNSLFMRPDT++ENI R +GVSKS+LLDR
Sbjct: 381 --NDTSNLPKTFKQKREEQRKASEAGGDTKAWNSLFMRPDTILENIVRVYGVSKSELLDR 438
Query: 446 EANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYD 505
EA D AVR+ALGET+VIAETK+AL AGVNV+SLE+F+ D RS H+ LVKNLP+
Sbjct: 439 EAEDPAVRLALGETKVIAETKEALAKAGVNVTSLEKFATRNGDEKNRSKHILLVKNLPFA 498
Query: 506 SSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
S+E ELA+MFGKFGSLDK+ILP TKT+AL VFLEP EA AA KG+AYKRYK PLYLEWA
Sbjct: 499 STEKELAQMFGKFGSLDKIILPPTKTMALAVFLEPAEARAALKGMAYKRYKDAPLYLEWA 558
Query: 566 PSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNF 625
P ++L + N++ + E+ +R LEQQ+E IDPD ES L VKNL+F
Sbjct: 559 PGNILEPKNLPDTNEERSDIE-ENGVRRVNLEQQVE------IDPDVTESNVLNVKNLSF 611
Query: 626 KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGT 685
KT DE L+KHF + +K+G+ILSV + KH KN K +S G+GF+EFDSVETAT+V RDLQGT
Sbjct: 612 KTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGT 671
Query: 686 ILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+LDGHALIL+ C K+ ++V K + KDK TKL V+N+AFEA ++
Sbjct: 672 VLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKR 716
Score = 536 (193.7 bits), Expect = 1.2e-199, Sum P(2) = 1.2e-199
Identities = 116/220 (52%), Positives = 150/220 (68%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SRICVKNLPK+V ED+LRD FSQKGEITDAKLMR+ DGKSRQF FIGFR+ QEA++AIKY
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAK-RGEKKTIE 119
FN +YL T I EIA KVGD N PRPWSR S KKE+E + + +G KK
Sbjct: 62 FNNTYLGTSLIIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSEGLKDGNAKGGKK--- 118
Query: 120 KVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLH 179
+ E DDP+ EFL+V Q R KSK+W+ND I ++ K + +A E+ ++
Sbjct: 119 RKAEVDDPEFQEFLEVHQ-RSKSKIWSNDMSIPPAPEETGKEKVLVKKA---DEQIVSNG 174
Query: 180 VKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKD 219
V+ K+ +D++ T+KSK AA + +SDM+YFKSR+KK+
Sbjct: 175 VEPKKAKKSSDTEKTKKSKVVAASDDVSDMEYFKSRIKKN 214
Score = 122 (48.0 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 46/203 (22%), Positives = 91/203 (44%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
R+ V+NLP ED+LR+HFS+ G +++ ++ D K S+ ++ + + A +AI+
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGK-SRQFGFIGFRSAQEAQQAIKY 61
Query: 360 LDNSIFQGRLLHVMPARHKKSSDK--QELHNSTSQGTKTLKQXXXXXXKASEASGNTKAW 417
+N+ + G L ++ HK + + + + + K+ K A G K
Sbjct: 62 FNNT-YLGTSLIIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSEGLKDGNAKGGKKRK 120
Query: 418 NSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ----VIAETKKALTNAG 473
+ D + H SKS + +ND+++ A ET ++ + + + + G
Sbjct: 121 AEV---DDPEFQEFLEVHQRSKSKIW---SNDMSIPPAPEETGKEKVLVKKADEQIVSNG 174
Query: 474 VNVSSLEEFSAGKTDGLKRSNHV 496
V ++ S T+ K+S V
Sbjct: 175 VEPKKAKKSS--DTEKTKKSKVV 195
Score = 108 (43.1 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-----LALVVFLEPVEAAAAFKGLAYK 553
VKN+ +++++ EL ++F FG + + LP A V F+ EA A K LA
Sbjct: 706 VKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALAST 765
Query: 554 RYKGVPLYLEWAPSD----VLSQSSTSKGNQKND 583
+ G L LEWA D + + S +K +++ND
Sbjct: 766 HFYGRHLVLEWANDDNSMEAIRKRSAAKFDEEND 799
Score = 101 (40.6 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L V+N+ + AT+ ELR+ FS FG + + + K+ + G A+V + + A A +
Sbjct: 703 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQEALNAKKA 761
Query: 360 LDNSIFQGRLL--------HVMPARHKKSSDKQELHNSTSQGTKTLK 398
L ++ F GR L + M A K+S+ K + N ++ K+ K
Sbjct: 762 LASTHFYGRHLVLEWANDDNSMEAIRKRSAAKFDEENDNARKRKSSK 808
Score = 90 (36.7 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 34/144 (23%), Positives = 62/144 (43%)
Query: 572 QSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN 631
+++TS V+ H E + D + D+ ++ L VKN+ F+
Sbjct: 659 ETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTK-LHVKNIAFEATKRE 717
Query: 632 LRKHFGEHIKEGRILSVKVKKHLKNGKNVSM--GFGFIEFDSVETATNVCRDLQGTILDG 689
LR+ F G+I S+++ K KN+ G+ F+EF + + A N + L T G
Sbjct: 718 LRQLFSPF---GQIKSMRLPK-----KNIGQYAGYAFVEFVTKQEALNAKKALASTHFYG 769
Query: 690 HALILQLCHAKKDEQVVKKAEKDK 713
L+L+ + + ++K K
Sbjct: 770 RHLVLEWANDDNSMEAIRKRSAAK 793
Score = 89 (36.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 48/197 (24%), Positives = 85/197 (43%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKY 60
R+ V+NLP TE+ L + FS G+I++ L+ K+ K SR A+I + + A A++
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 61 FNKSYLDTCRISCEIAR-------KVGDP-NMPRPWS--RYSLKKEKEVSEDEK--NPVL 108
+ S + A+ +V D N+P+ + R +K E D K N +
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGGDTKAWNSLF 414
Query: 109 AAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQA 168
+ I +V +LL+ + P V+ + +I + AK N++
Sbjct: 415 MRPDTILENIVRVYGVSKSELLD-REAEDPAVRLAL-GETKVIAETKEALAKAGVNVTSL 472
Query: 169 IK-----GGEKSITLHV 180
K G EK+ + H+
Sbjct: 473 EKFATRNGDEKNRSKHI 489
Score = 40 (19.1 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 33/145 (22%), Positives = 65/145 (44%)
Query: 74 EIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDD--PQLLE 131
E A+K + ++ K++ EV + E L + K K+ ND P E
Sbjct: 98 EEAKKSSSEGLKDGNAKGGKKRKAEVDDPEFQEFLEVHQRSKS---KIWSNDMSIPPAPE 154
Query: 132 FLQVMQPRVKSKMWANDTLIGLMAD-QKAKVSENISQAIKGGEKSITLHVKSD----KSN 186
+ + +V K A++ ++ + +KAK S + + K + + V SD KS
Sbjct: 155 --ETGKEKVLVKK-ADEQIVSNGVEPKKAKKSSDTEKTKKSKVVAASDDV-SDMEYFKSR 210
Query: 187 V---ITDSQATEKSKNAAADELMSD 208
+ ++DS++ +S++++ DE D
Sbjct: 211 IKKNLSDSESDNESEDSSEDEAGDD 235
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 1185 (422.2 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
Identities = 248/452 (54%), Positives = 323/452 (71%)
Query: 280 DPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
D G+ D +VL++GRLFV LPY+ TE+EL EHFSKFG++SEVH+V+DKDT+
Sbjct: 208 DDGHAMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSC 267
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399
+G+A+VLY IPESA A++ LD FQGR LH++PA+ + S KQ + NS++ K+ K+
Sbjct: 268 RGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPRAMSAKQ-VDNSSNL-PKSFKK 325
Query: 400 XXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459
KASEA GNT AWNS FMRPDT++EN+ R +GV+KS+LLDRE D AVR+ALGET
Sbjct: 326 EREEQRKASEACGNTNAWNSFFMRPDTILENLVRSYGVTKSELLDRECEDPAVRLALGET 385
Query: 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+VI ETK+AL AGV V+SLEEF+A K D RS H+ LVK+LP+ S+E ELA+MF KFG
Sbjct: 386 RVIMETKEALAKAGVRVTSLEEFAARKGDVKNRSKHILLVKHLPFASTEKELAQMFRKFG 445
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
SLDK++LP TKT+ALVVFLE EA AA GLAY RYK PLYLEWAP D+L + +
Sbjct: 446 SLDKIVLPPTKTMALVVFLEAAEARAAMNGLAYTRYKDAPLYLEWAPRDILEPKALADNK 505
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+K AV E+DA+R L+QQ+ G+ +DI ES L VKNL+FKT DE L+KH
Sbjct: 506 EKKSAVE-ENDARRVNLDQQV-GIY-SDI----TESNVLHVKNLSFKTTDEGLKKHLTGV 558
Query: 640 IKEGRILSVKVKKHLKNG-KNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698
+K+G+ILSVK + +++ + S G+GF+EFDSVETAT+V RDL G +LDGH+LIL
Sbjct: 559 VKQGKILSVK--QIIRDWTRRRSSGYGFVEFDSVETATSVYRDLPGNVLDGHSLILNFSE 616
Query: 699 AKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
K+ E V + ++K KL V+NVAFEA +K
Sbjct: 617 NKRSETVGEGSDKVTKLAKLHVKNVAFEATKK 648
Score = 266 (98.7 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
Identities = 81/225 (36%), Positives = 119/225 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SRI VKN+PKYVTED+LR FS+KGEITD KL R DG+SRQFA+IGFR+EQ+A++AI Y
Sbjct: 4 SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAITY 63
Query: 61 FNKSYLDTCRISCEIA-----RKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEK 115
FNK++ + +IS +A R G + + KK+ EV D + + +
Sbjct: 64 FNKNFKHSHQISVLVADPPPRRTQGKVDAYAKGDKQIQKKDPEVDHDPQLQEFLHQEHKL 123
Query: 116 K------TIEKVTENDDPQLLE--FLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQ 167
K I DDP + FL + R KSK+ +D + M K+++ +N+
Sbjct: 124 KFWSNDMCIHPSNGADDPNKAKRSFLDSKKTR-KSKV-GDD--VSDMEYFKSRIKKNLDS 179
Query: 168 AIK--GGEKSITL-----HVKSDKSNVITDSQATEKSKNAAADEL 205
+ E +I + VK+D+ + D A E + + D L
Sbjct: 180 DCETDSREDAINVFPIDGEVKADRVDKDDDGHAMEVEADGSDDVL 224
Score = 76 (31.8 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 190 DSQATEKSKNAAADELMSDMDYFKSRVKKD 219
DS+ T KSK D++ SDM+YFKSR+KK+
Sbjct: 150 DSKKTRKSK--VGDDV-SDMEYFKSRIKKN 176
Score = 73 (30.8 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSE 327
+V + +L V+N+ + AT+ ELR+ FS FG + E
Sbjct: 629 KVTKLAKLHVKNVAFEATKKELRQLFSPFGQIQE 662
Score = 52 (23.4 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDK 523
VKN+ +++++ EL ++F FG + +
Sbjct: 638 VKNVAFEATKKELRQLFSPFGQIQE 662
Score = 37 (18.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 611 DRVESRS-LFVKNLNFKTCDENLRKHF 636
D+V + L VKN+ F+ + LR+ F
Sbjct: 628 DKVTKLAKLHVKNVAFEATKKELRQLF 654
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 771 (276.5 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 179/452 (39%), Positives = 270/452 (59%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ ESGRLFVRNLP+T+TE++L + FSK+G +SE+H +D+ TK+ KG A++ Y IPE
Sbjct: 395 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 454
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A +A +D +FQGR++H++P+ KK ++ + ++ + + K+ KA+ AS
Sbjct: 455 HAVKAYAEMDGQVFQGRMMHLLPSTIKKL----KIEDIDAEESSSYKKQKEAKDKANSAS 510
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND-LAVRIALGETQVIAETKKALT 470
+ WN+LF+ + V + IA+K+ SKS +LD E+ D +AVR+ALGET+++ E ++ L
Sbjct: 511 SHN--WNTLFVGTNAVADAIAQKYNASKSQVLDHESKDSVAVRVALGETELVQEIRRFLI 568
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
GV++ S + +AG+ RS V LVKNLP +S EL +FGK GSL +V+LP+
Sbjct: 569 ENGVSLDSFSQ-AAGE-----RSKTVILVKNLPATTSTAELEAVFGKHGSLGRVLLPTGG 622
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH- 589
A+V FLEP+EA AF LAY ++ VPLYLEWAP V S + K N + GE
Sbjct: 623 ITAIVEFLEPIEAKQAFTKLAYSKFHSVPLYLEWAPMGVFSSPALQKKNVEALEKEGEER 682
Query: 590 ---DAKRALLEQQLEGVTDADIDPDRVESRS-----LFVKNLNFKTCDENLRKHFGEHIK 641
D + + D + D + E S LF+KNLNF T + L++ F K
Sbjct: 683 LVPDGDTTVKGSEETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFS---K 739
Query: 642 EGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH-- 698
G + S + KK K G +SMGFGF+E+ E+A R LQG I+DGH L +++
Sbjct: 740 VGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISERA 799
Query: 699 ---AKKDEQVVKKAEKDKSSTKLLVRNVAFEA 727
A K + + +K K+S K+LVRN+ F+A
Sbjct: 800 VRPAVKSSRKKQTVKKQKTS-KILVRNIPFQA 830
Score = 360 (131.8 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 85/227 (37%), Positives = 128/227 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + EDR R F+ G +TD L TKDGK R+F FIG+++E EA+ A+ +
Sbjct: 2 SRLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
FN+S++DT R++ E+ + GDP+ P+ WS++S K + EK +AA KK +K
Sbjct: 62 FNRSFIDTSRVTVELCKSFGDPSKPKAWSKHSQKVPALEKQPEKPMTIAAPASTKKDKKK 121
Query: 121 V--TEN-----DDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIK-GG 172
+EN +D EFL V Q R + WAND L + K + S+ ++ +
Sbjct: 122 KNPSENLKELEEDKTFQEFLVVHQKRSQVATWANDALA---EEPKKEKSKPVADYLNFDS 178
Query: 173 EKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKD 219
++S L + +K + ++ K AA E +SDMDY KS+V KD
Sbjct: 179 DESEDLS-EEEKDGRESSEAKKQQEKKAATREDLSDMDYLKSKVVKD 224
Score = 117 (46.2 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK----Y 60
++ P VTE ++R+FFS + ++ + GKS F F+ ++E E ++A+K Y
Sbjct: 299 LRGAPLNVTEQKIREFFSPLKPLA-IRMGKNTQGKSTGFIFVDLKSEAEVQKALKRKKEY 357
Query: 61 FNKSYLDTCRISCEIARK--VGDPNMPRPWSRYSLKKEKEVSED 102
Y++ R CE A K V +PW R +K++ E ED
Sbjct: 358 IGGQYVEVSR--CENAPKETVTAKTDDQPWQR--MKRDDEEEED 397
Score = 100 (40.3 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 279 VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK-DTK 337
V P SS K ++ ++ ++ VRN+P+ AT E+RE FS FG + V + T
Sbjct: 800 VRPAVKSSRKKQTVKKQ-KTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTG 858
Query: 338 RSKGIAYVLYAIPESASRAIEVLDNSI-FQGRLL 370
+G +V + + A +A L +S GR L
Sbjct: 859 SHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRL 892
Score = 97 (39.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-------STKTLALVVFLEPVEA 543
K+ LV+N+P+ ++ E+ ++F FG L V LP S + V FL +A
Sbjct: 815 KQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDA 874
Query: 544 AAAFKGLAYKRYK-GVPLYLEWAPSD 568
AF L + + G L LEWA ++
Sbjct: 875 KKAFNALCHSTHLYGRRLVLEWADTE 900
Score = 92 (37.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GK--SRQFAFIGFRTEQEAEEAIKY 60
+KNL TE L++ FS+ G + + + KD G S F F+ ++ + A++A++
Sbjct: 721 IKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRR 780
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEK 97
+D ++ +I+ + P + + ++KK+K
Sbjct: 781 LQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQK 817
Score = 84 (34.6 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
D + + D ES LFV+NL F + +E+L K F ++ I + + K K GF
Sbjct: 391 DDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEI-HFPIDRLTKKPK----GF 445
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
FI + E A ++ G + G + L KK + ++ + ++SS+
Sbjct: 446 AFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKKLK--IEDIDAEESSS 495
Score = 82 (33.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 30/113 (26%), Positives = 47/113 (41%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
RL V+NLP ED R+ F+ FG +++ + KD K K ++ Y + A A+
Sbjct: 3 RLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRK-FGFIGYKSEDEAQAALNH 61
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL-KQXXXXXXKASEAS 411
+ S + V + K + + SQ L KQ A+ AS
Sbjct: 62 FNRSFIDTSRVTVELCKSFGDPSKPKAWSKHSQKVPALEKQPEKPMTIAAPAS 114
Score = 76 (31.8 bits), Expect = 4.7e-34, Sum P(3) = 4.7e-34
Identities = 22/100 (22%), Positives = 47/100 (47%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
++ + V+N+ F+ +R+ F G + +V++ K + G GFGF++F + +
Sbjct: 817 KTSKILVRNIPFQATVREIRELFSTF---GELKTVRLPKKMA-GTGSHRGFGFVDFLTKQ 872
Query: 674 TATNVCRDL-QGTILDGHALILQLCHAKKDEQVVKKAEKD 712
A L T L G L+L+ ++ + +++ D
Sbjct: 873 DAKKAFNALCHSTHLYGRRLVLEWADTEETVEALRRRTAD 912
Score = 57 (25.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 31/135 (22%), Positives = 57/135 (42%)
Query: 303 VRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK-RSKGIAYVLYAIPESASRAIEVLD 361
+R P TE ++RE FS + + I + K+T+ +S G +V +A++
Sbjct: 299 LRGAPLNVTEQKIREFFSP---LKPLAIRMGKNTQGKSTGFIFVDLKSEAEVQKALKRKK 355
Query: 362 NSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLF 421
I G+ + V +R + + + + Q + +K+ SE SG N F
Sbjct: 356 EYI-GGQYVEV--SRCENAPKETVTAKTDDQPWQRMKRDDEEEEDLSE-SGRLFVRNLPF 411
Query: 422 MRPDTVVENIARKHG 436
+ +E I K+G
Sbjct: 412 TSTEEDLEKIFSKYG 426
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 746 (267.7 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 180/465 (38%), Positives = 272/465 (58%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ +SGRLF+RNLPYT+TE++L+ FSKFG +SE+H +D TK+ KG A+V + PE
Sbjct: 398 EEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPE 457
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A RA +D +FQGR+LHV+P+ KK + + ++ +QG+ + K+ KA+ +S
Sbjct: 458 HAVRAYAEVDGQVFQGRMLHVLPSTIKKEASE----DTDTQGS-SYKKKKESKDKANSSS 512
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAN-DLAVRIALGETQVIAETKKALT 470
+ WN+LFM P+ V + IA+K+ +KS + D E +AVR+ALGETQ++ E ++ L
Sbjct: 513 SHN--WNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLL 570
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV SL+ FS + RS V LVKNLP + EL + FG+FGSL +V+LP
Sbjct: 571 DNGV---SLDSFSQAAAE---RSKTVILVKNLPAGTLVAELQETFGRFGSLGRVLLPEGG 624
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST-SKGNQKNDAVVGEH 589
A+V FLEP+EA AF+ LAY ++ PLYLEWAP V S S+ +K Q A E
Sbjct: 625 ITAIVEFLEPLEARKAFRHLAYSKFHHTPLYLEWAPVGVFSSSAPQTKEPQDPPAGPAEE 684
Query: 590 D-AKRALLEQQLEGVTDAD---ID-PDRVESR--------------SLFVKNLNFKTCDE 630
D A+ + EG A+ D P +VE +LF+KNLNF T +E
Sbjct: 685 DRAEPETYNETPEGEKPAEGRAEDCPAKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEE 744
Query: 631 NLRKHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG 689
L+ F K G + S + KK K G+ +SMGFGF+E+ E A + LQG ++D
Sbjct: 745 TLKGVFS---KAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVDS 801
Query: 690 HALILQLCHAKKDEQVV----KKAEKDKSSTKLLVRNVAFEAQRK 730
H L +++ + K+ + ++++K+LVRN+ F+A ++
Sbjct: 802 HKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKR 846
Score = 347 (127.2 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 83/226 (36%), Positives = 123/226 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + EDR R F+ G +TD L TKDGK R+F FIGF++E+EA A+ +
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYS--LKKEKEVSEDEKNPVLAAKRGEK-KT 117
FN+S++DT RI+ E + GDP PR WS+++ K+ K S+D+ K+ +K K
Sbjct: 62 FNRSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKTKQSKNPSKDKDFVPTEPKKDDKTKK 121
Query: 118 IEKVTEN--DDPQLLEFLQVMQPRVKSKMWANDTLI--GLMADQKAKVSENISQAIKGGE 173
+ E +D + EFL Q R ++ WAND L L K S+ ++ G+
Sbjct: 122 VASELEKLKEDTEFQEFLSAHQKRTQTATWANDALDIEPLKGKSKPPASDYLNFDSDSGQ 181
Query: 174 KSITLHVKSDKSNVITDSQATEKSK-NAAADELMSDMDYFKSRVKK 218
+S D+ D + + K AA + +SDMDY KS++ K
Sbjct: 182 ES-------DEEGAGEDPEDDDGHKPRAAVQKELSDMDYLKSKMVK 220
Score = 115 (45.5 bits), Expect = 2.3e-42, Sum P(3) = 2.3e-42
Identities = 36/129 (27%), Positives = 62/129 (48%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEA 543
K++ LV+N+P+ + + E+ ++F FG L V LP T V FL +A
Sbjct: 828 KQTTSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA 887
Query: 544 AAAFKGLAYKRYK-GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG 602
AF+ L + + G L LEWA S+V Q+ K + + + +L++ LE
Sbjct: 888 KRAFQALCHSTHLYGRRLVLEWADSEVSLQALRRKTAEHFHEPPKKK--RSVVLDEILEQ 945
Query: 603 VTDADIDPD 611
+ D++ D +
Sbjct: 946 LEDSESDSE 954
Score = 113 (44.8 bits), Expect = 2.3e-42, Sum P(3) = 2.3e-42
Identities = 33/109 (30%), Positives = 50/109 (45%)
Query: 270 GEEDANGEIVD-PGN--PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVS 326
GE+ A G D P ++ ++E L LF++NL ++ TE+ L+ FSK G V
Sbjct: 698 GEKPAEGRAEDCPAKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVK 757
Query: 327 EVHIVVDKDTKR---SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
I K+ S G +V Y PE A +A++ L + L V
Sbjct: 758 SCSISKKKNKAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVDSHKLEV 806
Score = 98 (39.6 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD-TKRS 339
P S+ K V ++ S ++ VRN+P+ A + E++E FS FG + V + T
Sbjct: 815 PALTSTRKKQVPRKQTTS-KILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTH 873
Query: 340 KGIAYVLYAIPESASRAIEVLDNSI-FQGRLL 370
+G +V + + A RA + L +S GR L
Sbjct: 874 RGFGFVDFLTKQDAKRAFQALCHSTHLYGRRL 905
Score = 92 (37.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 27/113 (23%), Positives = 54/113 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GK--SRQFAFIGFRTEQEAEEAIKY 60
+KNL TE+ L+ FS+ G + + + K+ G+ S F F+ +R ++A++A+K
Sbjct: 734 IKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKALKQ 793
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKN-PVLAAKR 112
+D+ ++ I+ + P + + +K+ +N P A KR
Sbjct: 794 LQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKR 846
Score = 88 (36.0 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 29/105 (27%), Positives = 50/105 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
++ P VTE + +F + + +++R G + F+ FR+E+E ++A+K N+
Sbjct: 301 LRGAPFNVTEKNVLEFLAPLRPVA-IRIVRNAHGNKTGYIFVDFRSEEEIKQALKC-NRE 358
Query: 65 YLDTCRISCEIARKVGDP-------NMPRPWSRYSLKKEKEVSED 102
Y+ I EI R+ P N +PW +L E E ED
Sbjct: 359 YMGGRYI--EIFREKNVPTTKGPLKNSAKPWQGRTLG-ENEEEED 400
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/99 (26%), Positives = 42/99 (42%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
RL V+NLP ED R+ F+ FG +++ + KD K K ++ + E A A+
Sbjct: 3 RLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRK-FGFIGFKSEEEALSALNH 61
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ S + V + K + +Q TK K
Sbjct: 62 FNRSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKTKQSK 100
Score = 77 (32.2 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 22/100 (22%), Positives = 48/100 (48%)
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
P + + + V+N+ F+ +++ F G + +V++ K + G GFGF++F
Sbjct: 826 PRKQTTSKILVRNIPFQADKREIQELFSTF---GELKTVRLPKKM-TGTGTHRGFGFVDF 881
Query: 670 DSVETATNVCRDL-QGTILDGHALILQLCHAKKDEQVVKK 708
+ + A + L T L G L+L+ ++ Q +++
Sbjct: 882 LTKQDAKRAFQALCHSTHLYGRRLVLEWADSEVSLQALRR 921
Score = 67 (28.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ ++NLP TE+ L+ FS+ G +++ + + K + FAF+ F + A A
Sbjct: 406 RLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAE 465
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKN 105
+ + +K + S Y KK+KE S+D+ N
Sbjct: 466 VDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSY--KKKKE-SKDKAN 509
Score = 45 (20.9 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 29/125 (23%), Positives = 49/125 (39%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNLP L++ F + G + +++ + G + A + F EA +A ++
Sbjct: 591 ILVKNLPAGTLVAELQETFGRFGSL--GRVLLPEGGIT---AIVEFLEPLEARKAFRHLA 645
Query: 63 KSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVT 122
S + E A VG + P + KE + P R E +T +
Sbjct: 646 YSKFHHTPLYLEWA-PVGVFSSSAP-------QTKEPQDPPAGPA-EEDRAEPETYNETP 696
Query: 123 ENDDP 127
E + P
Sbjct: 697 EGEKP 701
Score = 37 (18.1 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 260 IIKDSIHSGVGEEDANGEIVDPGNPSSSSKD 290
++K S + EE++ E V G S + ++
Sbjct: 218 MVKSESLSSLEEEESEDEAVSCGEESGAEEE 248
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 701 (251.8 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 162/448 (36%), Positives = 257/448 (57%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
+ + Q++ E+GRLF+RN+ Y A+E++ R FS++G + EVHI +D T +SKG YV +
Sbjct: 300 EQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFL 359
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTSQGTKTLKQXXXXXXK 406
E A+RA LD IFQGRLLH++PA KK D+ +L N + + LK K
Sbjct: 360 KKEDATRAYRSLDKQIFQGRLLHILPADKKKDHRLDEFDLKNLPLKKQRELK-------K 412
Query: 407 ASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETK 466
++A+ +WNSL+M D V+E++A K GV+KS L+D E + AV+ AL E VI + +
Sbjct: 413 KAQAAKTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVKQALAEAHVIGDVR 472
Query: 467 KALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
K + GV+++S D +R + + LVKN P+ ++ E+ ++F +G L ++++
Sbjct: 473 KYFEDRGVDLTSF--------DKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLM 524
Query: 527 PSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQS-STSKGNQKNDAV 585
P T+A++ F + A AAF LAYKR+K LYLE P D+ ++ +T++ +
Sbjct: 525 PPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQ 584
Query: 586 VGEHDAKRALLEQQLEGVTDADIDPDRVESRSL--FVKNLNFKTCDENLRKHFGEHIKEG 643
EH + + ++ G + D + + V+ ++ FVKNLNF T + L F + +
Sbjct: 585 QNEHAVEAKISANEILGESKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLF-KPLPGF 643
Query: 644 RILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD 702
+ +VK K KN GK +SMGFGF+EF + E A L G +LDGH L L+L H +
Sbjct: 644 VVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGT 703
Query: 703 EQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+K S+K++++N+ FEA RK
Sbjct: 704 GTSASSIKKSGKSSKIIIKNLPFEATRK 731
Score = 361 (132.1 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 78/196 (39%), Positives = 125/196 (63%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VK LPKY TE++LR+FFS++G++TD KLM+ ++G+SR+FAFIG+++ AE A+KY
Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAK---RGEKKT 117
FNKS++DT RI E A+ DP +P + K+E++ +DE+ +L + + +K+
Sbjct: 62 FNKSFIDTARIEVEFAKTFSDPTVPLSFKE-KRKREEQKLKDEQERLLEQELRAQAKKQK 120
Query: 118 IEKVTENDD-----PQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVS-ENISQAIKG 171
+ +E DD P+L E+++VM+P + K WANDT+ AD S +++ A+ G
Sbjct: 121 TKSTSEIDDEIASNPKLREYMEVMKPSHQVKSWANDTI----ADGSGGPSVQDLENALNG 176
Query: 172 GEKSITLHVKSDKSNV 187
+S DKSN+
Sbjct: 177 NNESPV-----DKSNI 187
Score = 114 (45.2 bits), Expect = 1.4e-38, Sum P(4) = 1.4e-38
Identities = 32/119 (26%), Positives = 55/119 (46%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+S ++ ++NLP+ AT +L E F FG + V V K + ++G A+V + + + A A
Sbjct: 715 KSSKIIIKNLPFEATRKDLLELFGAFGQLKSVR-VPKKFDQSARGFAFVEFNLMKEAETA 773
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTK 415
+ L+ GR L + A + + E+ T K KQ A+ +G K
Sbjct: 774 MSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTK---KVKKQVATQNLAAARLAGKGK 829
Score = 111 (44.1 bits), Expect = 2.9e-38, Sum P(4) = 2.9e-38
Identities = 39/148 (26%), Positives = 71/148 (47%)
Query: 585 VVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644
V+ H + L +Q G + + I S+ + +KNL F+ ++L + FG G+
Sbjct: 687 VLDGHKLQLKLSHKQGTGTSASSIKKSGKSSK-IIIKNLPFEATRKDLLELFGAF---GQ 742
Query: 645 ILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD-- 702
+ SV+V K + GF F+EF+ ++ A L+G L G L++Q +A++D
Sbjct: 743 LKSVRVPKKFDQS---ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQ--YAEQDPE 797
Query: 703 ------EQVVKKAEKDKSSTKLLVRNVA 724
E++ KK +K ++ L +A
Sbjct: 798 NAEVEIERMTKKVKKQVATQNLAAARLA 825
Score = 107 (42.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
RL V+ LP TE++LRE FSK G+V++V ++ K S+ A++ Y ++A RA++
Sbjct: 3 RLIVKGLPKYYTEEKLREFFSKQGDVTDVKLM-KKRNGESRKFAFIGYKSADAAERAVKY 61
Query: 360 LDNSIFQGRLLHV 372
+ S + V
Sbjct: 62 FNKSFIDTARIEV 74
Score = 91 (37.1 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 24/102 (23%), Positives = 49/102 (48%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ ++N+ +E+ R FSQ G + + + + T+ GKS+ F ++ F +++A A +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPR-PWSRYSLKKEKEVSE 101
+K + A K D + LKK++E+ +
Sbjct: 371 LDKQIFQGRLLHILPADKKKDHRLDEFDLKNLPLKKQRELKK 412
Score = 88 (36.0 bits), Expect = 6.8e-36, Sum P(4) = 6.8e-36
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
++KNLP++++ +L ++FG FG L V +P S + A V F EA A L
Sbjct: 720 IIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEG 779
Query: 553 KRYKGVPLYLEWAPSD 568
G L +++A D
Sbjct: 780 VHLLGRRLVMQYAEQD 795
Score = 53 (23.7 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 195 EKSKNAAADELMSDMDYFKSR 215
E +N AA+E +SD+++ KSR
Sbjct: 240 ESGENLAANENISDLEWLKSR 260
Score = 44 (20.5 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 24/100 (24%), Positives = 43/100 (43%)
Query: 52 QEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMPR--PWSRYSLKK-EKEVSEDEKN--- 105
Q+ E A+ N+S +D I E+ V D + + S K E E E+E+
Sbjct: 168 QDLENALNGNNESPVDKSNI--EVVNTVEDASDDEYNDFKELSNKHGENEDEEEEEEMMS 225
Query: 106 ----PVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVK 141
P + + ++ E + N++ LE+L+ R+K
Sbjct: 226 LGDLPTNEENKDKNESGENLAANENISDLEWLKSRSTRIK 265
Score = 43 (20.2 bits), Expect = 1.4e-38, Sum P(4) = 1.4e-38
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQE 294
D+++ +S+ S +G +++DP N SS+ K E
Sbjct: 431 DAVL-ESVASKLGV--TKSQLIDPENSSSAVKQALAE 464
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 730 (262.0 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 179/447 (40%), Positives = 264/447 (59%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
+++V ESGRLF+RN+PYT TE++L+E FSK G +SEV +D TK+ KG A+V Y IPE
Sbjct: 392 EEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPE 451
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
+A A+ LD FQGR+LHVM +R KK Q + G+ + K+ KA AS
Sbjct: 452 NAVSALAQLDGHTFQGRVLHVMASRLKKEKADQ---GPDAPGSSSYKRKKDAKDKA--AS 506
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAN-DLAVRIALGETQVIAETKKALT 470
G++ WN+LF+ V + IA K+ +KS +LD E++ LAVR+ALGETQ++ ET++ L
Sbjct: 507 GSSHNWNTLFLGTSAVADAIAEKYNTTKSQVLDHESDGSLAVRMALGETQIVQETRQFLL 566
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV SL+ FS + G +RS V LVKNLP +L +F GSL +V+LP +
Sbjct: 567 DNGV---SLDSFS--QASG-ERSKCVILVKNLPSGVQVADLEALFSPHGSLGRVLLPPSG 620
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN-QKNDAVVGEH 589
A+V FLEP EA AF LAY +++ VPLYLEWAP V + S + Q + ++
Sbjct: 621 LTAIVEFLEPTEAKRAFMKLAYTKFQHVPLYLEWAPVAVFTTPSAPRPEPQTKEKSAVKN 680
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGE-HIKEGRILSV 648
D+ + E++ E D I P +LF+KNLNF T +E L+K F + + + +S
Sbjct: 681 DSVQNEEEEE-EEEEDDQILP----GSTLFIKNLNFITSEETLQKTFSKCGVVKSCTIS- 734
Query: 649 KVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV-- 706
KK K GK +SMG+GF+++ + E A R LQ +D H L +++ + V
Sbjct: 735 --KKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISEREVKSGVAQA 792
Query: 707 ---KKAEKDKSSTKLLVRNVAFEAQRK 730
K+ + ++++K+LVRN+ F+A K
Sbjct: 793 KRKKQTARKQTTSKILVRNIPFQATVK 819
Score = 345 (126.5 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 83/228 (36%), Positives = 125/228 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + EDR R F+ G +TD L TKDGK R+F F+GF+TE++A++A+K+
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
FNKS++DT R++ E+ GDPN RPWS+++ + + +EK ++ EKK +K
Sbjct: 62 FNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHEQGEK-EKKKPKK 120
Query: 121 VTE--ND---DPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKS 175
+ D D EFL V Q R + WANDT+ + + + Q K +
Sbjct: 121 ILNVLGDLEKDESFQEFLAVHQKRGQVPTWANDTVEATAVRPEMEKKKEKKQ--KAAVED 178
Query: 176 ITLHVKSDKSNVITDS---QATEKSKNAAADELM----SDMDYFKSRV 216
L+ SD+S +D A E+ K E + SDMDY +S++
Sbjct: 179 DYLNFDSDESEESSDDGEDAADEEDKQDNEKEALKTGLSDMDYLRSKM 226
Score = 106 (42.4 bits), Expect = 5.9e-40, Sum P(3) = 5.9e-40
Identities = 39/141 (27%), Positives = 62/141 (43%)
Query: 477 SSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STK 530
S + + K K++ LV+N+P+ ++ EL ++F FG L V LP S +
Sbjct: 787 SGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHR 846
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYK-GVPLYLEWAPSDVLSQSSTSKGNQK-NDAVVGE 588
+ FL +A AF L + + G L LEWA ++ K Q +DA +
Sbjct: 847 GFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVLEWADAEETVDDLRRKTAQHFHDAPKKK 906
Query: 589 HDAK--RALLEQQLEGVTDAD 607
A+ +LEQ G D +
Sbjct: 907 RKAEVLEGILEQMEVGDGDGE 927
Score = 104 (41.7 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 33/126 (26%), Positives = 57/126 (45%)
Query: 579 NQKNDAVVGEHDAKRALLEQQ-LEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFG 637
N KND AKR+ +E+ + + D + + D ES LF++N+ + +E+L++ F
Sbjct: 365 NFKND----RRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFS 420
Query: 638 EHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697
+H +L + K K GF F+ + E A + L G G L +
Sbjct: 421 KHGPLSEVL-FPIDSLTKKPK----GFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMAS 475
Query: 698 HAKKDE 703
KK++
Sbjct: 476 RLKKEK 481
Score = 100 (40.3 bits), Expect = 5.9e-40, Sum P(3) = 5.9e-40
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR---SKGIAYV 345
++ ++L LF++NL + +E+ L++ FSK G V I +D S G +V
Sbjct: 692 EEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFV 751
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHV-MPARHKKSSDKQ 384
Y PE+A +A+ L + L V + R KS Q
Sbjct: 752 QYKTPEAAQKAMRQLQHCTVDEHQLEVKISEREVKSGVAQ 791
Score = 94 (38.1 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ ++ VRN+P+ AT ELRE F FG + V + +G ++ + + A +A
Sbjct: 804 TSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAF 863
Query: 358 EVLDNSI-FQGRLLHVMPARHKKSSDKQELHNSTSQ 392
L +S GR L + A +++ D +L T+Q
Sbjct: 864 SALCHSTHLYGRRLVLEWADAEETVD--DLRRKTAQ 897
Score = 87 (35.7 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
RL V+NLP ED R+ F+ FG +++ + KD K K +V + E A +A++
Sbjct: 3 RLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRK-FGFVGFKTEEDAQKALKH 61
Query: 360 LDNS 363
+ S
Sbjct: 62 FNKS 65
Score = 80 (33.2 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
++ P V E ++++F + + + DG++ + ++ R+E E E A++ +K
Sbjct: 294 LRGAPFNVKEQQVKEFMMPLKPVA-IRFAKNSDGRNSGYVYVDLRSEAEVERALR-LDKD 351
Query: 65 YLDTCRISCEIARKVGDPNMPRPWSRYSLKKE--KEVSEDEKNPVLA 109
Y+ I E+ R N R R ++K +E+ +DE+ +A
Sbjct: 352 YMGGRYI--EVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVA 396
Score = 79 (32.9 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 580 QKNDAVVGEHDAKRALLEQQLE-GVTDADIDPD--RVESRS-LFVKNLNFKTCDENLRKH 635
Q V EH + + E++++ GV A R ++ S + V+N+ F+ + LR+
Sbjct: 765 QLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELREL 824
Query: 636 FGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL-QGTILDGHALIL 694
F G + +V++ K G + GFGFI+F + + A L T L G L+L
Sbjct: 825 FCTF---GELKTVRLPKKGIGGSH--RGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVL 879
Query: 695 QLCHAKK 701
+ A++
Sbjct: 880 EWADAEE 886
Score = 79 (32.9 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 19/82 (23%), Positives = 44/82 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GK--SRQFAFIGFRTEQEAEE 56
S + +KNL +E+ L+ FS+ G + + + +D GK S + F+ ++T + A++
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 57 AIKYFNKSYLDTCRISCEIARK 78
A++ +D ++ +I+ +
Sbjct: 762 AMRQLQHCTVDEHQLEVKISER 783
Score = 73 (30.8 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAI 58
R+ ++N+P TE+ L++ FS+ G +++ + + K + FAF+ + + A A+
Sbjct: 400 RLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSAL 457
Score = 44 (20.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 655 KNGKNVSMGFGFIEFDS---VETATNVCRDLQGTILDGHAL-ILQLCHAKKDEQVVKKAE 710
KN + G+ +++ S VE A + +D G G + + + + K D + K++E
Sbjct: 322 KNSDGRNSGYVYVDLRSEAEVERALRLDKDYMG----GRYIEVFRANNFKNDRRSAKRSE 377
Query: 711 KDKSSTKLL 719
+K+ + L
Sbjct: 378 MEKNFVREL 386
Score = 44 (20.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 26/102 (25%), Positives = 39/102 (38%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNLP V L FS G + +++ G + A + F EA+ A
Sbjct: 587 ILVKNLPSGVQVADLEALFSPHGSL--GRVLLPPSGLT---AIVEFLEPTEAKRAFMKLA 641
Query: 63 KSYLDTCRISCEIARKV--GDPNMPRPWSRYSLKKEKEVSED 102
+ + E A P+ PRP + K++ V D
Sbjct: 642 YTKFQHVPLYLEWAPVAVFTTPSAPRPEPQ--TKEKSAVKND 681
Score = 38 (18.4 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 20/87 (22%), Positives = 36/87 (41%)
Query: 113 GEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK--VSENISQAIK 170
GE E+ ++++ + L+ ++SKM ++ D + EN K
Sbjct: 195 GEDAADEEDKQDNEKEALKTGLSDMDYLRSKMVEKSDMLDEKDDDSSASAADENEEDEGK 254
Query: 171 GGEKSITLHVKSD-KSNVITDSQATEK 196
E+SI H S +S T SQ + +
Sbjct: 255 EEEESIVQHADSAYESGEKTSSQKSTR 281
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 706 (253.6 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 170/464 (36%), Positives = 261/464 (56%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ +SGRLFVRNL YT++E++L + FS +G +SE+H +D TK+ KG A+V + PE
Sbjct: 393 EEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A +A +D +FQGR+LHV+P+ KK + ++ N+ K K+ KA+ +S
Sbjct: 453 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEA--NAPGSSYKKKKEAMD---KANSSS 507
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAN-DLAVRIALGETQVIAETKKALT 470
+ WN+LFM P+ V + IA+K+ +KS + D E +AVR+ALGETQ++ E + L
Sbjct: 508 SHN--WNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLVQEVRSFLI 565
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV + S + +A +RS V L KNLP + E+ + F +FGSL +V+LP
Sbjct: 566 DNGVCLDSFSQAAA------ERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG 619
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHD 590
A+V FLEP+EA AF+ LAY ++ VPLYLEWAP V + K +Q
Sbjct: 620 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEV 679
Query: 591 AKRALLEQQLE--GVTDADIDPDRVESR---------------SLFVKNLNFKTCDENLR 633
+ +L+ + E V A+ ++E +LF+KNLNF T +E L+
Sbjct: 680 EQETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLK 739
Query: 634 KHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
F K G I S + KK K G +SMGFGF+E+ E A + LQG +DGH L
Sbjct: 740 GVFS---KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 796
Query: 693 ILQLCHAKKDEQVV----KKAEKDKSSTKLLVRNVAFEA-QRKI 731
+++ + K+ K ++++K+LVRN+ F+A QR+I
Sbjct: 797 EVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREI 840
Score = 342 (125.4 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 80/221 (36%), Positives = 120/221 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + E+R R F+ G +TD L TKDGK R+F FIGF++E+EA+ A+ +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKE--KEVSEDEKNPVLAAKRGEKK-- 116
F++S++DT RI+ E + GDP+ PR WS+++ K K+ S+D P K +KK
Sbjct: 62 FHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDSV-PSDTKKDKKKKGP 120
Query: 117 -TIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKS 175
+EK+ E D + EFL + Q R + WAND L + K K S +
Sbjct: 121 SDLEKLKE--DAKFQEFLSIHQKRTQVATWANDALEAKLPKAKTKASSDYLNFDSDSNSD 178
Query: 176 ITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRV 216
+ + + + + + K A EL SDMDY KS++
Sbjct: 179 SGQESEEEPAREDPEEEQGLQPKAAVQKEL-SDMDYLKSKM 218
Score = 112 (44.5 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEA 543
K++ LV+N+P+ +++ E+ ++F FG L V LP T V F+ +A
Sbjct: 820 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 879
Query: 544 AAAFKGLAYKRYK-GVPLYLEWAPSDVLSQSSTSK 577
AF L + + G L LEWA S+V Q+ K
Sbjct: 880 KKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRK 914
Score = 105 (42.0 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 270 GEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVH 329
G E + G++ + ++ ++E + LF++NL ++ TE+ L+ FSK G +
Sbjct: 696 GAEASTGKMEEE---EEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCT 752
Query: 330 IVVDKDTKR---SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
I K+ S G +V Y PE A +A++ L G L V
Sbjct: 753 ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 798
Score = 99 (39.9 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD-TKRS 339
P S+ K V ++ S ++ VRN+P+ A + E+RE FS FG + V + T
Sbjct: 807 PALTSTRKKQVPKKQTTS-KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAH 865
Query: 340 KGIAYVLYAIPESASRAIEVLDNSI-FQGRLL 370
+G +V + + A +A L +S GR L
Sbjct: 866 RGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 897
Score = 86 (35.3 bits), Expect = 5.6e-38, Sum P(3) = 5.6e-38
Identities = 32/138 (23%), Positives = 61/138 (44%)
Query: 572 QSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN 631
Q T G+ K + + E K AL + + V P + + + V+N+ F+
Sbjct: 787 QGHTVDGH-KLEVRISERATKPALTSTRKKQV------PKKQTTSKILVRNIPFQANQRE 839
Query: 632 LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL-QGTILDGH 690
+R+ F G + +V++ K + G GFGF++F + + A L T L G
Sbjct: 840 IRELFSTF---GELKTVRLPKKM-TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 895
Query: 691 ALILQLCHAKKDEQVVKK 708
L+L+ ++ Q +++
Sbjct: 896 RLVLEWADSEVTVQTLRR 913
Score = 83 (34.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK----SRQFAFIGFRTEQEAEEAIKY 60
+KNL TE+ L+ FS+ G I + + K+ S F F+ ++ ++A++A+K
Sbjct: 726 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 785
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKE 96
+D ++ I+ + P + + KK+
Sbjct: 786 LQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQ 821
Score = 81 (33.6 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 26/103 (25%), Positives = 45/103 (43%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK----Y 60
++ P VTE + +F + + +++R G + F+ +E+E ++A+K Y
Sbjct: 297 LRGAPFNVTEKNVIEFLAPLKPVA-IRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDY 355
Query: 61 FNKSYLDTCRIS-CEIARKVGDPNMPRPWSRYSLKKEKEVSED 102
Y++ R AR G P PW +L E E ED
Sbjct: 356 MGGRYIEVFREKQAPTAR--GPPKSTTPWQGRTLG-ENEEEED 395
Score = 76 (31.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
RL V+NLP E+ R+ F+ FG +++ + KD K K ++ + E A A+
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRK-FGFIGFKSEEEAQAAL 59
Score = 59 (25.8 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 23/98 (23%), Positives = 39/98 (39%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ V+NL +E+ L FS G +++ + + K + FAF+ F + A +A
Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKE 96
+ + +K P S Y KKE
Sbjct: 461 VDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKE 498
Score = 50 (22.7 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 30/135 (22%), Positives = 57/135 (42%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I KNLP +++ FS+ G + +++ + G + A + F EA +A ++
Sbjct: 586 ILAKNLPAGTLAAEIQETFSRFGSL--GRVLLPEGGIT---AIVEFLEPLEARKAFRHLA 640
Query: 63 KS-------YLDTCRISC-EIARKVGDPNMPRPWSRYSLKKEKEVS-EDEKNPVLAAKRG 113
S YL+ I A + D +P + +++E + E EK V A+
Sbjct: 641 YSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEAS 700
Query: 114 EKKTIEKVTENDDPQ 128
K E+ E ++ +
Sbjct: 701 TGKMEEEEEEEEEEE 715
Score = 38 (18.4 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSK 289
+DS V E+ + E + G+P+S +K
Sbjct: 231 EDSEDEAVNCEEGSEEEEEEGSPASPAK 258
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 700 (251.5 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 167/433 (38%), Positives = 249/433 (57%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ +SGRLFVRNLPYT++E++L + FSK+G +SE+H +D TK+ KG A+V + PE
Sbjct: 396 EEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 455
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A +A +D +FQGR+LHV+P+ KK + + ++ + G+ + K+ KAS +S
Sbjct: 456 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASE----DTDTPGSSSYKKKKESKDKASSSS 511
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAN-DLAVRIALGETQVIAETKKALT 470
+ WN+LFM P+ V + IA+K+ +KS + D E +AVR+ALGETQ++ E ++ L
Sbjct: 512 SHN--WNTLFMGPNAVADAIAQKYNSTKSQVFDHETKGSVAVRVALGETQLVQEVRRFLL 569
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV SL+ FS + RS V L KNLP + EL + FG+FGSL +V+LP
Sbjct: 570 DNGV---SLDSFSQAAAE---RSKTVILAKNLPAGTQAAELQETFGRFGSLGRVLLPEGG 623
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN-QKNDAVVGEH 589
A+V FLE +EA AF+ LAY ++ VPLYLEWAP V S + K Q A + E
Sbjct: 624 VTAIVEFLEALEARKAFRHLAYSKFHHVPLYLEWAPMGVFSSPAPQKKEPQDTPAELTEK 683
Query: 590 D-------------AKRALLEQQLEGVTDA---DIDPDRVESR---------SLFVKNLN 624
D + +E+ EG DA ++ + E +LF+KNLN
Sbjct: 684 DRMEPETGGAPMPGGETPEVEKPTEGGADAASAKVEEEEEEEEEEEESLPGCTLFIKNLN 743
Query: 625 FKTCDENLRKHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ 683
F T +E L+ F K G + S + KK K G +SMGFGF+E+ E A + LQ
Sbjct: 744 FSTTEETLKGVFS---KVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKALKQLQ 800
Query: 684 GTILDGHALILQL 696
G ++DGH L +++
Sbjct: 801 GHVVDGHKLEVRI 813
Score = 360 (131.8 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 85/224 (37%), Positives = 131/224 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + E+R R F+ G +TD L TKDGK R+F FIGF++E+EA+ A+ +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLK--KEKEVSEDEKN-PVLAAKRGEKKT 117
FNKS++DT RI+ E + GDP PR WS+++ K + K +D+ + P A K KK
Sbjct: 62 FNKSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKPSQSKPPPKDKDSVPPEAKKDNRKKK 121
Query: 118 I----EKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSEN-ISQAIKGG 172
+ EK+ ++D+ Q EFL V Q R + WAND L + K+K +++ ++ G
Sbjct: 122 VAGELEKLKKDDEFQ--EFLSVHQKRTQVATWANDALDAEPSKGKSKPADDYLNFDSDSG 179
Query: 173 EKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRV 216
++S + D + +A + AAA + +SDMDY +S+V
Sbjct: 180 QESEEEGTREDP-----EEEADGLERKAAAQKELSDMDYLRSKV 218
Score = 197 (74.4 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 50/149 (33%), Positives = 83/149 (55%)
Query: 587 GEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL 646
G DA A +E++ E + + + + + +LF+KNLNF T +E L+ F K G +
Sbjct: 709 GGADAASAKVEEEEE---EEEEEEESLPGCTLFIKNLNFSTTEETLKGVFS---KVGAVK 762
Query: 647 SVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH-AKKDEQ 704
S + KK K G +SMGFGF+E+ E A + LQG ++DGH L +++ A K
Sbjct: 763 SCSISKKKNKAGALLSMGFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAP 822
Query: 705 VV---KKAEKDKSSTKLLVRNVAFEAQRK 730
K+ + ++++K+LVRN+ F+A +
Sbjct: 823 TATRKKQVARKQTTSKILVRNIPFQADSR 851
Score = 110 (43.8 bits), Expect = 7.8e-43, Sum P(3) = 7.8e-43
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR---SKGIAYV 345
++ ++E L LF++NL ++ TE+ L+ FSK G V I K+ S G +V
Sbjct: 725 EEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFV 784
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHV 372
Y PE A +A++ L + G L V
Sbjct: 785 EYKKPEQAQKALKQLQGHVVDGHKLEV 811
Score = 108 (43.1 bits), Expect = 7.8e-43, Sum P(3) = 7.8e-43
Identities = 35/127 (27%), Positives = 58/127 (45%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEA 543
K++ LV+N+P+ + E+ ++F FG L V LP T V F +A
Sbjct: 833 KQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDA 892
Query: 544 AAAFKGLAYKRYK-GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG 602
AF L + + G L LEWA S+V Q+ K + + + +L++ LE
Sbjct: 893 KRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTAEHFHEPPKKK--RSVVLDEILEQ 950
Query: 603 VTDADID 609
+ D++ D
Sbjct: 951 LEDSEND 957
Score = 96 (38.9 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD-TKRS 339
P ++ K V ++ S ++ VRN+P+ A E+RE FS FG + V + T
Sbjct: 820 PAPTATRKKQVARKQTTS-KILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTH 878
Query: 340 KGIAYVLYAIPESASRAIEVLDNSI-FQGRLL 370
+G +V + + A RA L +S GR L
Sbjct: 879 RGFGFVDFFTKQDAKRAFNALCHSTHLYGRRL 910
Score = 83 (34.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GK--SRQFAFIGFRTEQEAEEAIKY 60
+KNL TE+ L+ FS+ G + + + K+ G S F F+ ++ ++A++A+K
Sbjct: 739 IKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKALKQ 798
Query: 61 FNKSYLDTCRISCEIARKVGDP 82
+D ++ I+ + P
Sbjct: 799 LQGHVVDGHKLEVRISERATKP 820
Score = 79 (32.9 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 22/102 (21%), Positives = 45/102 (44%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK----Y 60
++ P VTE + +F + + +++R G + F+ F +E+E ++A++ Y
Sbjct: 299 LRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYVFVDFSSEEEVKKALQCNREY 357
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSED 102
Y++ R K N + W +L + +E ED
Sbjct: 358 MGGRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEE-EED 398
Score = 78 (32.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
RL V+NLP E+ R+ F+ FG +++ + KD K K ++ + E A A+
Sbjct: 3 RLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRK-FGFIGFKSEEEAQTALNH 61
Query: 360 LDNS 363
+ S
Sbjct: 62 FNKS 65
Score = 77 (32.2 bits), Expect = 1.3e-39, Sum P(3) = 1.3e-39
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ V+N+ F+ +R+ F G + +V++ K + G GFGF++F + + A
Sbjct: 839 ILVRNIPFQADSREIRELFSTF---GELKTVRLPKKM-TGTGTHRGFGFVDFFTKQDAKR 894
Query: 678 VCRDL-QGTILDGHALILQLCHAKKDEQVVKK 708
L T L G L+L+ ++ Q +++
Sbjct: 895 AFNALCHSTHLYGRRLVLEWADSEVTLQALRR 926
Score = 76 (31.8 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 25/94 (26%), Positives = 41/94 (43%)
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
+ D +S LFV+NL + + +E+L K F ++ L + K K GF F+
Sbjct: 396 EEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSE-LHYPIDSLTKKPK----GFAFVT 450
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKD 702
F E A ++ G + G L + KK+
Sbjct: 451 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 484
Score = 69 (29.3 bits), Expect = 6.8e-11, Sum P(3) = 6.8e-11
Identities = 27/105 (25%), Positives = 48/105 (45%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ V+NLP +E+ L FS+ G +++ + + K + FAF+ F + A +A
Sbjct: 404 RLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 463
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDE 103
+ + +K + P S S KK+KE S+D+
Sbjct: 464 VDGQVFQGRMLHVLPSTIKKEASEDTDTPGSS-SYKKKKE-SKDK 506
Score = 56 (24.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 30/125 (24%), Positives = 50/125 (40%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I KNLP L++ F + G + +++ + G + A + F EA +A ++
Sbjct: 590 ILAKNLPAGTQAAELQETFGRFGSL--GRVLLPEGGVT---AIVEFLEALEARKAFRHLA 644
Query: 63 KSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE-DEKNPVLAAKR---GEKKTI 118
S + E A +G + P P + E++E D P GE +
Sbjct: 645 YSKFHHVPLYLEWA-PMGVFSSPAPQKKEPQDTPAELTEKDRMEPETGGAPMPGGETPEV 703
Query: 119 EKVTE 123
EK TE
Sbjct: 704 EKPTE 708
Score = 55 (24.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+VKNLP E ++F FG+L L TK
Sbjct: 5 IVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTK 37
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 737 (264.5 bits), Expect = 7.1e-103, Sum P(3) = 7.1e-103
Identities = 165/441 (37%), Positives = 265/441 (60%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++V ESGR+FVRNL Y+ E++L + FSKFG +SE+HI +D D+K+SKGIA++LY IPE+
Sbjct: 355 EDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPEN 414
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARH---KKSSDKQELHNSTSQG-TKTLKQXXXXXXKAS 408
A +A+ +D +FQGRL+HV+P + K+ S+ ++ +N+ ++G + + K K +
Sbjct: 415 AVQALNDMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTT 474
Query: 409 EASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKA 468
SG+T WN+LFMR D +V ++A ++ +++ LLD DLAVR+ L ET VI ETKK
Sbjct: 475 --SGSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKF 532
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS 528
L + GV + + K G KRSN V LVKN+P+ + E EL ++F KFG L +V+L
Sbjct: 533 LEDQGVIIQDI----GNK--GSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSP 586
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGE 588
+T+AL+ ++ P EA FK LAY ++ VPLYLEWAP V + K +K++
Sbjct: 587 ARTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKS 646
Query: 589 HDAKRALLEQQLEGVTDADIDPDRV----ESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644
D+ E + T A + ++ +++KNLN+KT +E L F + +K+
Sbjct: 647 SDSSNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKF-KSLKDYV 705
Query: 645 ILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD- 702
+++ K + KN + + GFGFIEF S + A + L G+ +DG+ + L+L +
Sbjct: 706 NVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETN 765
Query: 703 -EQVVKKAEKDKSSTKLLVRN 722
+++ K+ E ++S + + N
Sbjct: 766 VQEINKRRELPENSKQSIKSN 786
Score = 270 (100.1 bits), Expect = 7.1e-103, Sum P(3) = 7.1e-103
Identities = 62/166 (37%), Positives = 95/166 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+RICVK LPK++T+ R ++ F + G +TDAK+++ KDGKSR F FIGF TEQ A+ A+
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK-KDGKSRLFGFIGFSTEQSAKNALS- 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSL-----------KKEKEVSEDEKNPVLA 109
N +++DT +I E A + RPWS+YS+ +KEKE E ++
Sbjct: 62 LNGTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQDKL 121
Query: 110 AKRGEKKTIEKVTEN-------DDPQLLEFLQVMQPRVKSKMWAND 148
++ KK + T + +DP+ EFL ++ P+ K+W ND
Sbjct: 122 EQQSNKKQKKSHTNSLLDAELENDPEYQEFLNLVAPQANRKVWEND 167
Score = 141 (54.7 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 62/235 (26%), Positives = 103/235 (43%)
Query: 489 GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAA-AAF 547
G + +KNL + ++ L GKF SL + + T A P E F
Sbjct: 672 GTDNNTQFVYIKNLNWKTTNETLV---GKFKSLKDYVNVNIATKANPK--NPSERLPCGF 726
Query: 548 KGLAYKRYKGV-PLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDA 606
+ + +G + S + + K + KN+ V E + +R L E + +
Sbjct: 727 GFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSN 786
Query: 607 DIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666
P++ S+ + +KNL F++ + +RK F + G I SV++ K G GFGF
Sbjct: 787 GGQPNKPSSK-IIIKNLPFESTIKEIRKLFTAY---GEIQSVRIPKKPNGGHR---GFGF 839
Query: 667 IEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD-EQVVKKA----EKDKSST 716
+EF + E A N L + G L+LQ K+ +++ +KA EK K+ST
Sbjct: 840 VEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKNIDELREKANLDYEKIKNST 894
Score = 130 (50.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 35/123 (28%), Positives = 58/123 (47%)
Query: 261 IKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320
+ D + V E + E+ + S S Q S ++ ++NLP+ +T E+R+ F+
Sbjct: 758 LSDKNETNVQEINKRRELPENSKQSIKSNGGQPNK-PSSKIIIKNLPFESTIKEIRKLFT 816
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380
+G + V I K +G +V + E A A+E L NS F GR L + A K+
Sbjct: 817 AYGEIQSVRIP-KKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKN 875
Query: 381 SDK 383
D+
Sbjct: 876 IDE 878
Score = 102 (41.0 bits), Expect = 2.9e-25, Sum P(4) = 2.9e-25
Identities = 45/193 (23%), Positives = 83/193 (43%)
Query: 500 KNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVP 559
K +DSS +L KF S + I+ ++ +V+ + E+ + + K K
Sbjct: 252 KKKKHDSSVSDL-DWLSKFRSNNDEIIEKNQS---IVYRDEEESEE--EDVNNKENKKDK 305
Query: 560 LYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLF 619
+ ++ + + K N+K++ G+ D + + E + D D ES +F
Sbjct: 306 MKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKE-DEDVGESGRIF 364
Query: 620 VKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVC 679
V+NL++ T +E+L K F K G+I + + + K S G FI + E A
Sbjct: 365 VRNLSYSTKEEDLEKVFS---KFGKISEIHIPIDYDSKK--SKGIAFILYLIPENAVQAL 419
Query: 680 RDLQGTILDGHAL 692
D+ G + G +
Sbjct: 420 NDMDGKVFQGRLI 432
Score = 93 (37.8 bits), Expect = 5.3e-06, Sum P(4) = 5.3e-06
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ + R+ V+ LP T+ +EHF KFG V++ I+ KD K S+ ++ ++ +SA
Sbjct: 1 MSNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKII-KKDGK-SRLFGFIGFSTEQSAKN 58
Query: 356 AIEV 359
A+ +
Sbjct: 59 ALSL 62
Score = 47 (21.6 bits), Expect = 2.9e-25, Sum P(4) = 2.9e-25
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 703 EQVVKKAEKDKSSTKLLVRNVAFEAQ 728
+ + K K +S+T LLV+N+ F+ Q
Sbjct: 541 QDIGNKGSK-RSNTVLLVKNIPFKTQ 565
Score = 46 (21.3 bits), Expect = 7.1e-103, Sum P(3) = 7.1e-103
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 700 KKDEQVVKK--AEKDKSSTKLLVRNVAFEAQRK 730
+ +Q +K + +K S+K++++N+ FE+ K
Sbjct: 777 ENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIK 809
Score = 41 (19.5 bits), Expect = 8.1e-79, Sum P(3) = 8.1e-79
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 94 KKEKEVSEDEKNPVLAAKRGEKKTIEKVTEND 125
KK+K +D K K+ +KK +K +ND
Sbjct: 302 KKDKMKIDDNKENKKEKKKDKKKN-KKDNDND 332
Score = 40 (19.1 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 17/94 (18%), Positives = 41/94 (43%)
Query: 642 EGRILSVKVKKHLK----NGKNVSMGFGFIEFDS-VETATNVCRDLQGTILDGHALILQL 696
EG S K +K K +G + F+ D+ V + + QG +LD + + L +
Sbjct: 457 EGGSSSFKAEKEQKQKTTSGSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAV 516
Query: 697 CHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+ V+ + +K ++++++ + ++
Sbjct: 517 RMTLMETHVINETKKFLEDQGVIIQDIGNKGSKR 550
Score = 37 (18.1 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 425 DTVVENIARKHGVSKSDL 442
D+++ +KH S SDL
Sbjct: 246 DSIINEKKKKHDSSVSDL 263
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 679 (244.1 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
Identities = 167/474 (35%), Positives = 267/474 (56%)
Query: 279 VDPGNPS----SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK 334
VD GN S + ++ ESGR+F RNL YT TE++LR+ F +FG V EV++ +DK
Sbjct: 340 VDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDK 399
Query: 335 DTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQEL-HNSTSQG 393
T++ KG V Y +PE A +A LD + F GRLLH++P++ + + K++L N S
Sbjct: 400 LTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLS 459
Query: 394 TKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDRE--ANDLA 451
K K+ A + G WN+LF+ + V E +A++ SK +LD + A
Sbjct: 460 FKE-KKALKLKKNAQKPIG----WNTLFLGANAVAEILAKQFKTSKERILDTSDGGSSAA 514
Query: 452 VRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGEL 511
VR+ALGETQV+ E K+ L GV + + +E KRSN V L KNLP + E+
Sbjct: 515 VRLALGETQVVIEMKRFLEEEGVRLDAFDE------PAKKRSNTVILAKNLPAATEISEI 568
Query: 512 AKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLS 571
+F +FG + +++LP + AL+ + +P+EA AFK LAY ++K PLYLEWAP V +
Sbjct: 569 TPIFSRFGPIGRIVLPPSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFT 628
Query: 572 QSST-------SKGNQKNDAVVGEHD-AKRALLEQQLEGVTDADIDPDRVESRSLFVKNL 623
++ + S+ K +A E A +++ DAD +P+ + +LF++NL
Sbjct: 629 KTLSGEPVIPKSEPKPKEEAKPEEKPIVNDAKPDEEDSRAEDADDEPE--PNTTLFLRNL 686
Query: 624 NFKTCDENLRKHFGEHIKEGRILSVKVKKHL--KNGKNV-SMGFGFIEFDSVETATNVCR 680
NFKT E + KHF H+ G I +V++ K +N + S+G+GFI+F A + +
Sbjct: 687 NFKTVQETVEKHF-RHL--GSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALK 743
Query: 681 DLQGTILDGHALILQ----LCHAKKDEQVVKK--AEKDKSSTKLLVRNVAFEAQ 728
+LQ T +DG+ + L+ + + ++ ++ ++K ++ TK+LVRN+ F+AQ
Sbjct: 744 NLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQ 797
Score = 313 (115.2 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
Identities = 75/227 (33%), Positives = 122/227 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SRI VK LPK++TED+LR F +G ITD +L T DGK RQF F+G+ TE+EA+ AI++
Sbjct: 2 SRIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEK---EVSEDEKNPVLAAKRGEKKT 117
F+ + + T R+ E +G + P+ WS+Y+ +K ++ E E+ AK EKK
Sbjct: 62 FDNTCIQTSRVRVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKK 121
Query: 118 ----IEKVTE-----NDDPQLLEFLQVMQPRVKSK-MWANDTLIGLMADQKAKVSENISQ 167
++KV + DDP+ EFL+ KS+ +W ND I + + + E +
Sbjct: 122 KKDKVDKVDQILSRHKDDPEFQEFLEAHD---KSRTLWGNDLGINKNREDEEEDDEQQEK 178
Query: 168 AIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKS 214
+ + S + + + D E+ + A++ +SD++Y KS
Sbjct: 179 SRAARDDS-GVDADAGDEDGSGDEADEEEDTDKLAEKPISDLEYMKS 224
Score = 124 (48.7 bits), Expect = 0.00062, P = 0.00062
Identities = 83/350 (23%), Positives = 147/350 (42%)
Query: 375 ARHKKSSDKQELHNSTSQGTKTL--KQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIA 432
+RHK + QE + + ++TL + E + + S R D+ V+ A
Sbjct: 134 SRHKDDPEFQEFLEAHDK-SRTLWGNDLGINKNREDEEEDDEQQEKSRAARDDSGVDADA 192
Query: 433 RKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKR 492
S + + E D + + + + K+L ++ ++ A K D K
Sbjct: 193 GDEDGSGDEADEEEDTDKLAEKPISDLEYM----KSLMATTSGEATAKKPKA-KAD--KS 245
Query: 493 SNHVFLVK--NLPYDSSEGELAKMFGKFGSLDKVILPS-TKTLALVVF-LEPVEAAAAFK 548
+ +F +K N+PY++ E+ K F V LPS V F E A K
Sbjct: 246 NLELFTIKIHNVPYNTKRQEVLKFFKPLKPYS-VRLPSKVHGFCYVGFKTEKDMAKGMLK 304
Query: 549 GLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADI 608
++ + K V + ++ + ++++S S G A V DA A + Q + ++ D
Sbjct: 305 NKSFIKGKQV-FFSDFTEKNKVTKASKS-GQPLAPAAV---DAGNAKWKHQQDSLSKED- 358
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
D ES +F +NL + T +E+LRK F + G ++ V + K + + GFG +
Sbjct: 359 --DISESGRIFFRNLAYTTTEEDLRKLFEQF---GPVVEVNLPLD-KLTRKIK-GFGTVT 411
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKL 718
+ E A L GT D H +L L +K E+ K+ + D++ L
Sbjct: 412 YMMPEHALKAFNTLDGT--DFHGRLLHLLPSKDIEKNPKE-DLDENDASL 458
Score = 109 (43.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
R+ V+ LP TED+LR+ F G ++++ + D K + +V Y+ E A AI
Sbjct: 3 RIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGK-FRQFCFVGYSTEEEAQSAIRH 61
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNS 419
DN+ Q + V S DK + + ++ +K K K EA+ K +
Sbjct: 62 FDNTCIQTSRVRVESCAALGSEDKPQSWSKYAKDSK--KNLDKLKEKEREAAAKAKE-SE 118
Query: 420 LFMRPDTV--VENIARKH 435
+ D V V+ I +H
Sbjct: 119 KKKKKDKVDKVDQILSRH 136
Score = 96 (38.9 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 29/112 (25%), Positives = 49/112 (43%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS--K 340
N + + Q+ ++ VRN+P+ A E+R+ F FG + + I T +
Sbjct: 769 NDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHR 828
Query: 341 GIAYVLYAIPESASRAIEVLDNSI-FQGRLLHVMPARHKKSSDKQELHNSTS 391
G +V Y A RA + L S GR L + + + + D +EL T+
Sbjct: 829 GFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWSANDDNQDVEELRKRTA 880
Score = 86 (35.3 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 34/138 (24%), Positives = 58/138 (42%)
Query: 593 RALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK 652
R L Q +G + + V+N+ F+ +R F G + S+++ K
Sbjct: 762 RVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAF---GELRSLRIPK 818
Query: 653 HLKNGKNVSMGFGFIEFDSVETATNVCRDLQG-TILDGHALILQLCHAKKDEQVVKKAEK 711
G++ GFGF+++ S A L T L G L+L+ A D Q V++ K
Sbjct: 819 KATTGEDAHRGFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWS-ANDDNQDVEELRK 877
Query: 712 DKSSTKLLVRNVAFEAQR 729
+++ K A A+R
Sbjct: 878 -RTAAKFDGSQAATAAKR 894
Score = 82 (33.9 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT--------LALVVFLEPVE 542
K++ LV+N+P+ + E+ +F FG L + +P T V ++ E
Sbjct: 781 KQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAE 840
Query: 543 AAAAFKGLAYKRYK-GVPLYLEWAPSD 568
A AF L+ + G L LEW+ +D
Sbjct: 841 AKRAFDALSASTHLYGRRLVLEWSAND 867
Score = 49 (22.3 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 39 KSRQFAFIGFRTEQE-AEEAIKYFNKSYL 66
K F ++GF+TE++ A+ +K NKS++
Sbjct: 283 KVHGFCYVGFKTEKDMAKGMLK--NKSFI 309
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 717 (257.5 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 174/464 (37%), Positives = 273/464 (58%)
Query: 284 PSSSSKDVQ-QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
P + +++ +++ ++GRLF+RN+ YT+ E++ R+ FS FG + EVH+ +D T +SKG
Sbjct: 329 PQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGF 388
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTSQGTKTLKQX 400
AYVL+ ++A A LD IFQGRLLH++P KKS D+ +L N + K LK+
Sbjct: 389 AYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKELKR- 447
Query: 401 XXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
KA+ AS T +WNSL+M D V+ ++A K G+ KS L+D E + AV+ AL E
Sbjct: 448 -----KAA-ASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEAH 501
Query: 461 VIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS 520
VI + +K + GV+ L +FS K+ +R + V LVKN P+ ++ EL +MF +G
Sbjct: 502 VIGDVRKYFESKGVD---LTKFSQLKSTN-QRDDKVILVKNFPFGTTREELGEMFLPYGK 557
Query: 521 LDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQ-------- 572
L+++++P T+A+V F + A AAF L+YKR+K +YLE P D ++
Sbjct: 558 LERLLMPPAGTIAIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGPKDCFTKPAEADDLI 617
Query: 573 SSTSKGNQKNDAVV--GEHDAKRALLEQQLEGVTDADIDPDRVESR--SLFVKNLNFKTC 628
++TS ++N V +D A + EG ++A D D ++ S+F+KNLNF T
Sbjct: 618 NNTSAKEEENPVEVKPSSNDLMEAN-KDVTEGSSNAH-DEDVIDGPTVSIFIKNLNFSTT 675
Query: 629 DENLRKHFGEHIKEGRILS-VKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTI 686
++NL F + G +++ VK K K+ GK +SMGFGF+EF + E A V + GT+
Sbjct: 676 NQNLTDRF--KVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTV 733
Query: 687 LDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+DGH + L+L H + + K + +K S K++V+N+ FEA RK
Sbjct: 734 IDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRK 777
Score = 261 (96.9 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 71/225 (31%), Positives = 115/225 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-----------GE----ITDAKLMRTKDGKSRQFAF 45
SRI VK LP Y+T+D LR+ F+++ G ITD K++R ++G+SR+F F
Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61
Query: 46 IGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKN 105
IG+R E++A +A++YFN S+++T +I +A+ DP +P+P + K E E+
Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEEK 121
Query: 106 PVLAAKRGEKKTIEKVTEN-DDP-----QLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159
+ R +KK E N DD QL EF++ M+P + W + + D+K
Sbjct: 122 LLQEENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSSQVTSWEKVGIDKSIEDEKL 181
Query: 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADE 204
K E S +++G S+ H + K D +N + DE
Sbjct: 182 KREEEDS-SVQGN--SLLAHALALKEENNKDEAPNLVIENESDDE 223
Score = 128 (50.1 bits), Expect = 5.0e-27, Sum P(2) = 5.0e-27
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+SG++ V+NLP+ AT ++ E F+ FG + V V K K ++G A+V + +P+ A A
Sbjct: 761 KSGKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKEAENA 819
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTK 415
++ L GR L + A ++E+ T K KQ A G K
Sbjct: 820 MDQLHGVHLLGRRLVMQYAEEDAVDAEEEIARMTK---KVRKQVATNEMAALRNGGGRK 875
Score = 103 (41.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 486 KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEP 540
KT K+S + +VKNLP++++ ++ ++F FG L V +P S + A V FL P
Sbjct: 755 KTKSNKKSGKI-IVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLP 813
Query: 541 VEAAAAFKGLAYKRYKGVPLYLEWAPSDVL 570
EA A L G L +++A D +
Sbjct: 814 KEAENAMDQLHGVHLLGRRLVMQYAEEDAV 843
Score = 93 (37.8 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
+S + VKNL F+ +++ + F G++ SV+V K K K+ + GF F+EF +
Sbjct: 761 KSGKIIVKNLPFEATRKDVFELFNSF---GQLKSVRVPK--KFDKS-ARGFAFVEFLLPK 814
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVA 724
A N L G L G L++Q +A++D V E+ TK + + VA
Sbjct: 815 EAENAMDQLHGVHLLGRRLVMQ--YAEED--AVDAEEEIARMTKKVRKQVA 861
Score = 78 (32.5 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 39/155 (25%), Positives = 72/155 (46%)
Query: 63 KSYLDTCRISCEIA--RKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
+ +++T + S ++ KVG + + LK+E+E S + N +LA K E+
Sbjct: 152 QEFMETMKPSSQVTSWEKVG---IDKSIEDEKLKREEEDSSVQGNSLLAHALALK---EE 205
Query: 121 VTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHV 180
+++ P L+ ++ S + N DQ+ E +I K + +
Sbjct: 206 NNKDEAPNLV--IENESDDEYSALNRNRD-----EDQEDAGEEEKMISISN-LKDTDIGL 257
Query: 181 KSDKSNVITDSQATEKSKNAAADELMSDMDYFKSR 215
+D +N +D + EK +N A DE +SD+D+FK R
Sbjct: 258 VNDDAN--SDEKENEKRRNLAQDEKVSDLDWFKQR 290
Score = 70 (29.7 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ ++N+ E+ R FS GE+ + + + T+ G+S+ FA++ F+ + A A
Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405
Query: 61 FNK 63
+K
Sbjct: 406 LDK 408
Score = 70 (29.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 300 RLFVRNLPYTATEDELREHFSKF-----------GN----VSEVHIVVDKDTKRSKGIAY 344
R+ V+ LP T+D LREHF+K G+ +++V I+ D++ + S+ +
Sbjct: 3 RIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGE-SRRFGF 61
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
+ Y E A A+E + S + V A+
Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK 93
Score = 63 (27.2 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD----GK--SRQFAFIGFRTEQEAEE 56
I +KNL T L D F A++ D GK S F F+ FRT+++A
Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANA 724
Query: 57 AIKYFNKSYLDTCRISCEIARK 78
I + + +D +I +++ +
Sbjct: 725 VIAAMDGTVIDGHKIQLKLSHR 746
Score = 37 (18.1 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 104 KNPVLAAKRGEKKTIEKVTENDD 126
K+ ++ +RG K K E DD
Sbjct: 593 KDGIIYLERGPKDCFTKPAEADD 615
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 512 (185.3 bits), Expect = 3.0e-91, Sum P(3) = 3.0e-91
Identities = 119/319 (37%), Positives = 180/319 (56%)
Query: 277 EIVDPGNPSSSSKD-----VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIV 331
E+++ S S+D V++++LE+GRLF+RNLPY ED+L+ F K+G VSEV +V
Sbjct: 252 EVIEEHGASLESRDKEEETVREKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVV 311
Query: 332 VDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQE------ 385
+DK T KG A V + PE+A A LD +F+GR++H++P K++ + +E
Sbjct: 312 IDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHILPGDEKRTKEGEEESEVVP 371
Query: 386 --------LHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGV 437
+ K+ K+ KAS A +WN+LF+ + + + +A++ V
Sbjct: 372 DDPDNPLKAEAKKEKKKKSFKEEKDEQKKAS-AGKTAHSWNALFLGANAIADTLAQRLNV 430
Query: 438 SKSDLLDREANDLA-VRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHV 496
KSDLL + + A VR+AL ET+++ ET+ GV L+ FS KRS+ V
Sbjct: 431 KKSDLLTSDQGESAGVRLALAETRLVRETRDFFLENGVK---LDAFSKPAE---KRSDTV 484
Query: 497 FLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTL-ALVVFLEPVEAAAAFKGLAYKRY 555
L KNLP EL +MF KFG KV++P+ + ALV+ PV+A AF+ LAY R+
Sbjct: 485 MLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSALVIMGNPVDAKKAFRALAYSRF 544
Query: 556 KGVPLYLEWAPSDVLSQSS 574
+ PLYLEWAP DV+ ++
Sbjct: 545 RSQPLYLEWAPYDVMGATA 563
Score = 323 (118.8 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 395 KTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLA-VR 453
K+ K+ KAS A +WN+LF+ + + + +A++ V KSDLL + + A VR
Sbjct: 389 KSFKEEKDEQKKAS-AGKTAHSWNALFLGANAIADTLAQRLNVKKSDLLTSDQGESAGVR 447
Query: 454 IALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAK 513
+AL ET+++ ET+ GV L+ FS KRS+ V L KNLP EL +
Sbjct: 448 LALAETRLVRETRDFFLENGVK---LDAFSKPAE---KRSDTVMLAKNLPAGVESEELQR 501
Query: 514 MFGKFGSLDKVILPSTKTL-ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVL-- 570
MF KFG KV++P+ + ALV+ PV+A AF+ LAY R++ PLYLEWAP DV+
Sbjct: 502 MFEKFGDCTKVLMPTEGGVSALVIMGNPVDAKKAFRALAYSRFRSQPLYLEWAPYDVMGA 561
Query: 571 ----SQSSTSKGNQKNDAVVGE--HDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLN 624
++ T++ K E ++ KR + + +G+T+ + D V K +
Sbjct: 562 TAPPAEDKTAEVADKPKLSKREMTYEEKRKERKNRQQGITEEEKDDGEVIEEEEKPKEVE 621
Query: 625 FKTCDENLRKHFGEHIKEGRILSVK 649
+ ++ +K + I+ G L VK
Sbjct: 622 AEDKKKSSKKQSEKEIESGSTLFVK 646
Score = 237 (88.5 bits), Expect = 3.0e-91, Sum P(3) = 3.0e-91
Identities = 60/184 (32%), Positives = 98/184 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ VKNLP TE +LR FF + G+I+DA L TK+GK R FAF+GF E A A+
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRY----SLKKEKEVSEDEKNPVLAAKRGEKK 116
N+++ ++ +++ E R GD N PR WS+Y S K ++E NP K E +
Sbjct: 63 SNQTFFNSKKLTVEECRPFGDANKPRAWSKYAKDSSAYKRTHGEKEEANP---GKSDETE 119
Query: 117 TIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKG--GEK 174
+ DD + +FL+ V+ + + L D+ A+ + +++ + G G+
Sbjct: 120 EPAPKKQKDDAKFDQFLEAKGVVVEKE-------VKLSKDKSAEAKKLMAELMDGIGGDT 172
Query: 175 SITL 178
S++L
Sbjct: 173 SLSL 176
Score = 214 (80.4 bits), Expect = 3.0e-91, Sum P(3) = 3.0e-91
Identities = 61/161 (37%), Positives = 91/161 (56%)
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRS-LFVKNLNFKTCDENL----RK 634
+K+D V E + K +E + + + +ES S LFVKNL F T D +L RK
Sbjct: 604 EKDDGEVIEEEEKPKEVEAEDKKKSSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRK 663
Query: 635 HFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694
+G+ +K +I S K+ + K +SMGFGF++F + A +D+QG +LDGH+L L
Sbjct: 664 RYGDLVKSAQI-SKKLNP-AEPTKPLSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLEL 721
Query: 695 QLCHAKK-DEQVVKKAE-KDKSS---TKLLVRNVAFEAQRK 730
++ H + D+ +K+ E K K TKLLVRN+ FEA K
Sbjct: 722 KISHRENADKGALKRKEVKQKEQGECTKLLVRNLPFEASVK 762
Score = 124 (48.7 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
RL V+NLP T TE +LR+ F K+G +S+ + K+ K +G A+V + SAS A+
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGK-FRGFAFVGFLDEGSASNALAK 62
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKAS 408
+ + F + L V R ++K + ++ + K+ +A+
Sbjct: 63 SNQTFFNSKKLTVEECRPFGDANKPRAWSKYAKDSSAYKRTHGEKEEAN 111
Score = 102 (41.0 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 35/123 (28%), Positives = 57/123 (46%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILPST-------KTLALVVFLEPVEAAAAFKGL 550
LV+NLP+++S E+ +F FG++ + +P + V F+ EA AF L
Sbjct: 751 LVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFDSL 810
Query: 551 AYKRYK-GVPLYLEWAPSDVLSQSSTSKGNQK---NDAVVGEHDAKRALLEQQLEGVTDA 606
+ + G L LEWA D + K +K N V + A+ +QQL+ + D
Sbjct: 811 VHSTHLYGRRLVLEWAKDDETVEELREKTAEKFAGNKKGVKKSKAQTEEFQQQLQ-IADD 869
Query: 607 DID 609
+ D
Sbjct: 870 EKD 872
Score = 98 (39.6 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 289 KDVQQ-EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS-KGIAYVL 346
K+V+Q E E +L VRNLP+ A+ E+ F FG V + I K+ +G +V
Sbjct: 737 KEVKQKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVD 796
Query: 347 YAIPESASRAIEVLDNSI-FQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ + A RA + L +S GR L + A K +EL T++
Sbjct: 797 FISADEAHRAFDSLVHSTHLYGRRLVLEWA--KDDETVEELREKTAE 841
Score = 93 (37.8 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 33/124 (26%), Positives = 59/124 (47%)
Query: 271 EEDANGEIVDPGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFSK-FGNVSEV 328
EE+ + V+ + SSK ++ +ESG LFV+NL + T+ L F K +G++ +
Sbjct: 612 EEEEKPKEVEAEDKKKSSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRKRYGDLVKS 671
Query: 329 HIVVDK-----DTKR-SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSD 382
+ K TK S G +V + A A++ + + G L + H++++D
Sbjct: 672 AQISKKLNPAEPTKPLSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLE-LKISHRENAD 730
Query: 383 KQEL 386
K L
Sbjct: 731 KGAL 734
Score = 86 (35.3 bits), Expect = 8.1e-78, Sum P(3) = 8.1e-78
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNG-KNVSMGFGFIEFDSV 672
E L V+NL F+ + + F G + ++++ K K G K GFGF++F S
Sbjct: 746 ECTKLLVRNLPFEASVKEVETLFETF---GAVKTIRIPK--KPGQKQQHRGFGFVDFISA 800
Query: 673 ETATNVCRDL-QGTILDGHALILQLCHAKKDEQVVKKAEK 711
+ A L T L G L+L+ AK DE V + EK
Sbjct: 801 DEAHRAFDSLVHSTHLYGRRLVLEW--AKDDETVEELREK 838
Score = 81 (33.6 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLM-RTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ ++NLP ED L+ F + GE+++ +++ K G + FA + F + A A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
+ Y+ R+ + GD + S + V +D NP+ A + EKK
Sbjct: 340 LD-GYVFKGRMMHILP---GDEKRTKEGEEES----EVVPDDPDNPLKAEAKKEKKKKSF 391
Query: 121 VTENDD 126
E D+
Sbjct: 392 KEEKDE 397
Score = 80 (33.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 32/128 (25%), Positives = 58/128 (45%)
Query: 585 VVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644
V+ EH A +++ E V + ++ R LF++NL + T +++L+ F ++ G
Sbjct: 253 VIEEHGASLESRDKEEETVREKILETGR-----LFLRNLPYATKEDDLQFLFKKY---GE 304
Query: 645 ILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ V+V K G GF +EF E A L G + G + + DE+
Sbjct: 305 VSEVQVVIDKKTG--ACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI----LPGDEK 358
Query: 705 VVKKAEKD 712
K+ E++
Sbjct: 359 RTKEGEEE 366
Score = 68 (29.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-----LALVVFLEPVEAAAA 546
+VKNLP +E +L K F K+G + L TK A V FL+ A+ A
Sbjct: 6 IVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNA 59
Score = 58 (25.5 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGK-F 518
+VI E +K V ++ S +++ S VKNL +D+++G L +F K +
Sbjct: 609 EVIEEEEKPKE---VEAEDKKKSSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRKRY 665
Query: 519 GSLDK 523
G L K
Sbjct: 666 GDLVK 670
Score = 56 (24.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 33/131 (25%), Positives = 58/131 (44%)
Query: 6 KNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSY 65
KNLP V + L+ F + G+ T LM T+ G S A + +A++A + S
Sbjct: 488 KNLPAGVESEELQRMFEKFGDCTKV-LMPTEGGVS---ALVIMGNPVDAKKAFRALAYSR 543
Query: 66 LDTCRISCEIARK--VGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK-VT 122
+ + E A +G P + + ++S+ E KR E+K ++ +T
Sbjct: 544 FRSQPLYLEWAPYDVMGATAPPAEDKTAEVADKPKLSKREMT--YEEKRKERKNRQQGIT 601
Query: 123 EN--DDPQLLE 131
E DD +++E
Sbjct: 602 EEEKDDGEVIE 612
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 592 (213.5 bits), Expect = 3.2e-91, Sum P(2) = 3.2e-91
Identities = 157/469 (33%), Positives = 252/469 (53%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ +SGRLFVRNLPYT++E++L + FS++G VSE+H +D TK+ KG A+V + PE
Sbjct: 356 EEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPE 415
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A +A +D +FQGR+LHV+P+ KK + + ++ + + + K+ KA+ +S
Sbjct: 416 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASE----DANAPESSSYKKKKESKDKANSSS 471
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAN-DLAVRIALGETQVIAETKKALT 470
+ WN+LFM P+ V + IA+K+ +KS + D E +AVR+ALGETQ++ E ++ L
Sbjct: 472 SHN--WNTLFMGPNAVADAIAQKYSATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLL 529
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV L+ FS G + GL ++ + L ++ DS E F + GS V++P
Sbjct: 530 DNGV---CLDSFSQGGS-GLSKT--LTLQLSIKADSLPAEPQGGFTRLGSPGVVLIPRWG 583
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQ---------------SST 575
A+V L PV F + + VPLYLEWAP V S + T
Sbjct: 584 ITAVVCSLPPVPPGKPFVHVCTSTFHHVPLYLEWAPMGVFSSPIPQKEEPQDAPAEPAGT 643
Query: 576 SKGNQKNDAVV--GE-------HDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFK 626
+ + D GE HDA + E++ E + + + + + +LF+KNLNF
Sbjct: 644 DRMEPETDGETPEGEQPTDRAAHDASAKMEEEEEE---EEEEEEESLPGCTLFIKNLNFD 700
Query: 627 TCDENLRKHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGT 685
T +E L+ F K G + S + KK K G +SMGFGF+E+ E A + LQG
Sbjct: 701 TTEETLKGVFS---KVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKALKQLQGH 757
Query: 686 ILDGHALILQLCH-AKK---DEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
++DGH L +++ A K + K + + ++ TK+ VR F+ +
Sbjct: 758 VVDGHKLEVRISERATKSALNSGRHKHSPRRQTDTKIWVRVCPFQGDSR 806
Score = 347 (127.2 bits), Expect = 3.2e-91, Sum P(2) = 3.2e-91
Identities = 84/226 (37%), Positives = 126/226 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + E+R R F+ G +TD L TKDGK R+F FIGF++E+EA+ A+ +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLK--KEKEVSEDEKNPVLAAKRGEKKT- 117
FNKS++DT RI+ E + GDP PR WS+++ K + K +D+ K+ +KK
Sbjct: 62 FNKSFIDTSRITVEFCKAFGDPTKPRAWSKHAQKSSQSKPPPKDKDAISTEPKKDDKKKK 121
Query: 118 ----IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK-VSENISQAIKGG 172
+EK+ DD + EFL V Q R + WAND L + K+K ++ ++ G
Sbjct: 122 AAGELEKL--KDDNEFQEFLSVHQKRTQVATWANDALDAEPSKGKSKPANDYLNFDSDSG 179
Query: 173 EKSITLHVKSDKSNVITDSQATEKSKN--AAADELMSDMDYFKSRV 216
++S + S D ++ K AA + +SDMDY KS+V
Sbjct: 180 QESEE-EEDGENSEEEEDGLKPKEPKEPKAAVQKELSDMDYLKSKV 224
Score = 112 (44.5 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 35/113 (30%), Positives = 54/113 (47%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR---SKGIAYV 345
++ ++E L LF++NL + TE+ L+ FSK G V I K+ S G +V
Sbjct: 680 EEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFV 739
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHV-MPARHKKSSDKQELH-NSTSQGTKT 396
Y PE A +A++ L + G L V + R KS+ H +S + T T
Sbjct: 740 EYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKSALNSGRHKHSPRRQTDT 792
Score = 87 (35.7 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 36/121 (29%), Positives = 52/121 (42%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEAAAAFKGLA 551
V+ P+ EL ++F FG L V LP T V FL +A AF L
Sbjct: 796 VRVCPFQGDSRELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNALC 855
Query: 552 YKRYK-GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKR--ALLEQQLEGVTDADI 608
+ + G L LEWA S+V S +K E K+ +L++ LE + D++
Sbjct: 856 HSTHLYGRRLVLEWADSEV----SLPALRRKTAEHFHEPPKKKRSVVLDEILEQLEDSED 911
Query: 609 D 609
D
Sbjct: 912 D 912
Score = 73 (30.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ V+NLP +E+ L FS+ G +++ + + K + FAF+ F + A +A
Sbjct: 364 RLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 423
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKN 105
+ + +K + P S S KK+KE S+D+ N
Sbjct: 424 VDGQVFQGRMLHVLPSTIKKEASEDANAPESS-SYKKKKE-SKDKAN 468
Score = 72 (30.4 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD-KDTKRSKGIAYVLYAIPESASRAIE 358
+++VR P+ EL+E F+ FG + V + T +G +V + + A RA
Sbjct: 793 KIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFN 852
Query: 359 VLDNSI-FQGRLL 370
L +S GR L
Sbjct: 853 ALCHSTHLYGRRL 865
Score = 69 (29.3 bits), Expect = 6.5e-62, Sum P(2) = 6.5e-62
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 31 KLMRTKDGKSRQFAFIGFRTEQEAEEAIK----YFNKSYLDTCRISCEIARKVGDPNMPR 86
+++R G + F+ F +E+E +A+K Y Y++ R K N +
Sbjct: 284 RIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAK 343
Query: 87 PWSRYSLKKEKEVSED 102
PW +L + +E ED
Sbjct: 344 PWQGRTLGEHEE-EED 358
Score = 67 (28.6 bits), Expect = 2.1e-37, Sum P(3) = 2.1e-37
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
P R ++V+ F+ L++ F G + +V++ K L G GFGF++F
Sbjct: 786 PRRQTDTKIWVRVCPFQGDSRELKEIFNTF---GELKTVRLPKKL-TGTGTHRGFGFVDF 841
Query: 670 DSVETATNVCRDL-QGTILDGHALILQ 695
+ + A L T L G L+L+
Sbjct: 842 LTKQDAKRAFNALCHSTHLYGRRLVLE 868
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 771 (276.5 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 179/452 (39%), Positives = 270/452 (59%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ ESGRLFVRNLP+T+TE++L + FSK+G +SE+H +D+ TK+ KG A++ Y IPE
Sbjct: 71 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 130
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A +A +D +FQGR++H++P+ KK ++ + ++ + + K+ KA+ AS
Sbjct: 131 HAVKAYAEMDGQVFQGRMMHLLPSTIKKL----KIEDIDAEESSSYKKQKEAKDKANSAS 186
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND-LAVRIALGETQVIAETKKALT 470
+ WN+LF+ + V + IA+K+ SKS +LD E+ D +AVR+ALGET+++ E ++ L
Sbjct: 187 SHN--WNTLFVGTNAVADAIAQKYNASKSQVLDHESKDSVAVRVALGETELVQEIRRFLI 244
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
GV++ S + +AG+ RS V LVKNLP +S EL +FGK GSL +V+LP+
Sbjct: 245 ENGVSLDSFSQ-AAGE-----RSKTVILVKNLPATTSTAELEAVFGKHGSLGRVLLPTGG 298
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH- 589
A+V FLEP+EA AF LAY ++ VPLYLEWAP V S + K N + GE
Sbjct: 299 ITAIVEFLEPIEAKQAFTKLAYSKFHSVPLYLEWAPMGVFSSPALQKKNVEALEKEGEER 358
Query: 590 ---DAKRALLEQQLEGVTDADIDPDRVESRS-----LFVKNLNFKTCDENLRKHFGEHIK 641
D + + D + D + E S LF+KNLNF T + L++ F K
Sbjct: 359 LVPDGDTTVKGSEETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFS---K 415
Query: 642 EGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH-- 698
G + S + KK K G +SMGFGF+E+ E+A R LQG I+DGH L +++
Sbjct: 416 VGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISERA 475
Query: 699 ---AKKDEQVVKKAEKDKSSTKLLVRNVAFEA 727
A K + + +K K+S K+LVRN+ F+A
Sbjct: 476 VRPAVKSSRKKQTVKKQKTS-KILVRNIPFQA 506
Score = 100 (40.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 279 VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK-DTK 337
V P SS K ++ ++ ++ VRN+P+ AT E+RE FS FG + V + T
Sbjct: 476 VRPAVKSSRKKQTVKKQ-KTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTG 534
Query: 338 RSKGIAYVLYAIPESASRAIEVLDNSI-FQGRLL 370
+G +V + + A +A L +S GR L
Sbjct: 535 SHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRL 568
Score = 97 (39.2 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-------STKTLALVVFLEPVEA 543
K+ LV+N+P+ ++ E+ ++F FG L V LP S + V FL +A
Sbjct: 491 KQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDA 550
Query: 544 AAAFKGLAYKRYK-GVPLYLEWAPSD 568
AF L + + G L LEWA ++
Sbjct: 551 KKAFNALCHSTHLYGRRLVLEWADTE 576
Score = 92 (37.4 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GK--SRQFAFIGFRTEQEAEEAIKY 60
+KNL TE L++ FS+ G + + + KD G S F F+ ++ + A++A++
Sbjct: 397 IKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRR 456
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEK 97
+D ++ +I+ + P + + ++KK+K
Sbjct: 457 LQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQK 493
Score = 84 (34.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 34 RTKDGKSRQFAFIGFRTEQEAEEAIK----YFNKSYLDTCRISCEIARK--VGDPNMPRP 87
+ GKS F F+ ++E E ++A+K Y Y++ R CE A K V +P
Sbjct: 3 KNTQGKSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSR--CENAPKETVTAKTDDQP 60
Query: 88 WSRYSLKKEKEVSED 102
W R +K++ E ED
Sbjct: 61 WQR--MKRDDEEEED 73
Score = 76 (31.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 22/100 (22%), Positives = 47/100 (47%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
++ + V+N+ F+ +R+ F G + +V++ K + G GFGF++F + +
Sbjct: 493 KTSKILVRNIPFQATVREIRELFSTF---GELKTVRLPKKMA-GTGSHRGFGFVDFLTKQ 548
Query: 674 TATNVCRDL-QGTILDGHALILQLCHAKKDEQVVKKAEKD 712
A L T L G L+L+ ++ + +++ D
Sbjct: 549 DAKKAFNALCHSTHLYGRRLVLEWADTEETVEALRRRTAD 588
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 497 (180.0 bits), Expect = 3.0e-76, Sum P(3) = 3.0e-76
Identities = 124/330 (37%), Positives = 181/330 (54%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N S +++Q + E+ RLF+RNL Y+ ED+L+ F FG + +VH+ +DK T KG
Sbjct: 308 NVSEQERNIQL-ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGF 366
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXX 402
AY+ + + A RA LD FQGRLLHV+PA+ + S L + + LK+
Sbjct: 367 AYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAKARSSI----LLDDYALSKLPLKKQRE 422
Query: 403 XXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVI 462
K + AS +T +WNSL+M D VV ++A + GV K+D+LD ++D AV+ AL ET VI
Sbjct: 423 LKRKNTAAS-STFSWNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVI 481
Query: 463 AETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD 522
ETK GV++ + + + RS++V LVKN PY +S EL +F FG L
Sbjct: 482 QETKNFFEEHGVDLDAFKNAA--------RSDNVLLVKNFPYGTSAEELTSLFSPFGELG 533
Query: 523 KVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN--- 579
++++P T+A++ FL + AF LAY R K LYLE AP DV + S G
Sbjct: 534 RILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVFTTSFKQSGKPEL 593
Query: 580 -QKNDAVVGEHDAKRALLEQQLEGVTDADI 608
QK +AV E + + +E + A I
Sbjct: 594 AQKVNAV--EATTSEKVGTEDIESLDTATI 621
Score = 481 (174.4 bits), Expect = 1.7e-65, Sum P(2) = 1.7e-65
Identities = 121/329 (36%), Positives = 181/329 (55%)
Query: 406 KASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAET 465
+ + A+ +T +WNSL+M D VV ++A + GV K+D+LD ++D AV+ AL ET VI ET
Sbjct: 425 RKNTAASSTFSWNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVIQET 484
Query: 466 KKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVI 525
K GV++ + + + RS++V LVKN PY +S EL +F FG L +++
Sbjct: 485 KNFFEEHGVDLDAFKNAA--------RSDNVLLVKNFPYGTSAEELTSLFSPFGELGRIL 536
Query: 526 LPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAV 585
+P T+A++ FL + AF LAY R K LYLE AP DV + S G +
Sbjct: 537 IPPAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVFTTSFKQSGKPELAQK 596
Query: 586 VGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI 645
V +A + E V DI+ +++ +++VKNLNF T E +K F EG +
Sbjct: 597 VNAVEATTS------EKVGTEDIES--LDTATIYVKNLNFSTKQEEFQKVFKP--LEGYL 646
Query: 646 LSV-KVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703
+V + K K GK +SMGFGF+EF +A + G +LDGH L ++L H D
Sbjct: 647 SAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDA 706
Query: 704 QV-VKKAEKDK-SSTKLLVRNVAFEAQRK 730
V+K + K TK+L++N+ FEA +K
Sbjct: 707 AAEVRKQDSSKPKGTKILIKNLPFEATKK 735
Score = 247 (92.0 bits), Expect = 3.0e-76, Sum P(3) = 3.0e-76
Identities = 58/161 (36%), Positives = 91/161 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQ----KGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEE 56
SRI +KN+P+Y +++L + EITD + +TK+G SR+FAFIGF+ E++A++
Sbjct: 2 SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61
Query: 57 AIKYFNKSYLDTCRISCEIARKVGDPNMP-RPWSRYS-----LKKEKEVSEDEKNPVLAA 110
AI+Y NKSY++T RI A N RP+S+Y+ LK +K+ E+E +
Sbjct: 62 AIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELKLQKKEKEEELRNLEEE 121
Query: 111 KRGEKKTIE---KVTENDDPQLLEFLQVMQPRVKSKMWAND 148
K +KK K + DP+ EFL++ S+ W N+
Sbjct: 122 KAKKKKDANLKRKFLDTLDPKAREFLKLSSSISNSRSWENE 162
Score = 108 (43.1 bits), Expect = 3.0e-76, Sum P(3) = 3.0e-76
Identities = 36/147 (24%), Positives = 68/147 (46%)
Query: 573 SSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDA-DIDPDRVESRSLFVKNLNFKTCDEN 631
S+ + + N V+ H + L Q ++ + D + + + +KNL F+ ++
Sbjct: 677 SAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKD 736
Query: 632 LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691
++ G + G++ SV+V K + GF F EF + A N R L+ T L G
Sbjct: 737 VQSLLGAY---GQLRSVRVPKKFDRS---ARGFAFAEFVTAREAANAMRALKNTHLLGRH 790
Query: 692 LILQLC-HAKKDEQ--VVKKAEKDKSS 715
L+LQ +A D+ ++K K+ ++
Sbjct: 791 LVLQYASNATMDDMQHAIEKMAKEANA 817
Score = 93 (37.8 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 28/102 (27%), Positives = 49/102 (48%)
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP- 527
L++ GV+ ++ K D K L+KNLP+++++ ++ + G +G L V +P
Sbjct: 699 LSHQGVDAAA----EVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPK 754
Query: 528 ----STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
S + A F+ EAA A + L G L L++A
Sbjct: 755 KFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 91 (37.1 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ +++ +G + V V K + ++G A+ + A+ A+
Sbjct: 722 KILIKNLPFEATKKDVQSLLGAYGQLRSVR-VPKKFDRSARGFAFAEFVTAREAANAMRA 780
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQ 384
L N+ GR L + A + D Q
Sbjct: 781 LKNTHLLGRHLVLQYASNATMDDMQ 805
Score = 83 (34.3 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 25/126 (19%), Positives = 56/126 (44%)
Query: 568 DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRV-ESRSLFVKNLNFK 626
D L ++ + V + A ++L++ V++ + + + E++ LF++NL +
Sbjct: 274 DELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYS 333
Query: 627 TCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686
+++L+ FG + ++ + + K N K GF +I+F + A +L
Sbjct: 334 CAEDDLKSLFGPFGQLEQV-HMPIDKKTNNPK----GFAYIDFHDADDAVRAYLELDAKP 388
Query: 687 LDGHAL 692
G L
Sbjct: 389 FQGRLL 394
Score = 78 (32.5 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 27/112 (24%), Positives = 54/112 (48%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKF-GNVSEVHIVVDKDTKR-----SKGIAYVLY 347
E L++ ++V+NL ++ ++E ++ F G +S V I D KR S G +V +
Sbjct: 614 ESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAV-IRAKPDPKRPGKYLSMGFGFVEF 672
Query: 348 AIPESASRAIEVLDNSIFQGRLLHVMPARH--KKSSDKQELHNSTSQGTKTL 397
SA A+ ++ + G L + + +++ ++ +S +GTK L
Sbjct: 673 KDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKIL 724
Score = 38 (18.4 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 668 EFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
E DS+++ + G ++DG H ++ EQ + S T
Sbjct: 193 EGDSIKSTEHDSTLDSGVVIDGREKSSSELHEEESEQAAEGDTAKNSGT 241
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 177/468 (37%), Positives = 268/468 (57%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ ESGRLFVRNLPYT+TE++L + FSK+G +SE+H +D TK+ KG A++ + PE
Sbjct: 395 EEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
A +A +D +FQGR+LHV+P+ KK + + ++++ G+ + K+ KA+ AS
Sbjct: 455 HAVKAYSEVDGQVFQGRMLHVLPSTIKKEASE----DASALGSSSYKKKKEAQDKANSAS 510
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAN-DLAVRIALGETQVIAETKKALT 470
+ WN+LFM P+ V + IA+K+ +KS + D E +AVR+ALGETQ++ E ++ L
Sbjct: 511 SHN--WNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLI 568
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV SL+ FS + RS V LVKNLP + +L + FG FGSL +V+LP
Sbjct: 569 DNGV---SLDSFSQAAAE---RSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGG 622
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHD 590
A+V FLEP+EA AF+ LAY ++ VPLYLEWAP V S ++ K + D +
Sbjct: 623 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQK-KKLQDTPSEPME 681
Query: 591 AKRALLEQQLEGVTDADIDP------------------DRVESRSL-----FVKNLNFKT 627
A E +G T D +P + E SL F+KNLNF T
Sbjct: 682 KDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDT 741
Query: 628 CDENLRKHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686
+E L++ F K G + S + KK K G +SMGFGF+E+ E A + LQG +
Sbjct: 742 TEEKLKEVFS---KVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHV 798
Query: 687 LDGHALILQLCHAKKDEQVV----KKAEKDKSSTKLLVRNVAFEAQRK 730
+DGH L +++ V K+ + ++++K+LVRN+ F+A +
Sbjct: 799 VDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSR 846
Score = 371 (135.7 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 118/445 (26%), Positives = 203/445 (45%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + E+R R F+ G +TD L TKDGK R+F FIGF++E+EA++A K+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLK--KEKEVSEDEKNPVLAAKRGEKKT- 117
FNKS++DT RI+ E + GDP PR WS+++ K + K+ +D P + +KK
Sbjct: 62 FNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVA 121
Query: 118 --IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK-VSENISQAIKGGEK 174
+EK+ E D + EFL V Q R ++ WAND L + K+K S+ ++ G++
Sbjct: 122 GQLEKLKE--DTEFQEFLSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQE 179
Query: 175 SITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWXXXXXXXXXXXXXX 234
S + + + + +A+ + K A EL SDMDY KS++ K
Sbjct: 180 S-----EEEGAGEDLEEEASLEPKAAVQKEL-SDMDYLKSKMVK-------AGSSSSSEE 226
Query: 235 XXXXXXXXXXXXXXXXXXXXXXCDSIIKDSIHSGVGEEDAN--GEIVDPGNPSSSSKDV- 291
++++ G G+E G+ P + + K
Sbjct: 227 EESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPAN 286
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E + +R P+ TE + E + V+ + IV + ++ G +V ++ E
Sbjct: 287 QKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKT-GYIFVDFSNEE 344
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEAS 411
+A++ + GR + V ++ ++ + + S + L + A S
Sbjct: 345 EVKQALKC-NREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAE--S 401
Query: 412 GNTKAWNSLFMRPDTVVENIARKHG 436
G N + + +E + K+G
Sbjct: 402 GRLFVRNLPYTSTEEDLEKLFSKYG 426
Score = 122 (48.0 bits), Expect = 5.5e-13, Sum P(3) = 5.5e-13
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSSSSK--------DVQQEVLESGRLFVRNLPYTATEDE 314
+++ G ED N + G +SS+K + ++E L LF++NL + TE++
Sbjct: 688 ETVPDGETPEDENP--TEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEK 745
Query: 315 LREHFSKFGNVSEVHIVVDKDTKR---SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371
L+E FSK G V I K+ S G +V Y PE A +A++ L + G L
Sbjct: 746 LKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLE 805
Query: 372 V 372
V
Sbjct: 806 V 806
Score = 115 (45.5 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 39/131 (29%), Positives = 61/131 (46%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEA 543
K++ LV+N+P+ + E+ ++F FG L V LP T V FL +A
Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA 887
Query: 544 AAAFKGLAYKRYK-GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKR--ALLEQQL 600
AF L + + G L LEWA S+V Q+ +K A E K+ +L++ L
Sbjct: 888 KRAFNALCHSTHLYGRRLVLEWADSEVTLQAL----RRKTAAHFHEPPKKKRSVVLDEIL 943
Query: 601 EGVTDADIDPD 611
E + +D D +
Sbjct: 944 EQLEGSDSDSE 954
Score = 92 (37.4 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD-TKRS 339
P + K V ++ S ++ VRN+P+ A E+RE FS FG + V + T
Sbjct: 815 PAVTLARKKQVPRKQTTS-KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTH 873
Query: 340 KGIAYVLYAIPESASRAIEVLDNSI-FQGRLL 370
+G +V + + A RA L +S GR L
Sbjct: 874 RGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905
Score = 90 (36.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK----SRQFAFIGFRTEQEAEEAIKY 60
+KNL TE++L++ FS+ G + + + K+ S F F+ +R ++A++A+K
Sbjct: 734 IKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQ 793
Query: 61 FNKSYLDTCRISCEIARKVGDP 82
+D ++ I+ + P
Sbjct: 794 LQGHVVDGHKLEVRISERATKP 815
Score = 80 (33.2 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 23/100 (23%), Positives = 47/100 (47%)
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
P + + + V+N+ F+ +R+ F G + +V++ K + G GFGF++F
Sbjct: 826 PRKQTTSKILVRNIPFQAHSREIRELFSTF---GELKTVRLPKKM-TGTGTHRGFGFVDF 881
Query: 670 DSVETATNVCRDL-QGTILDGHALILQLCHAKKDEQVVKK 708
+ + A L T L G L+L+ ++ Q +++
Sbjct: 882 LTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRR 921
Score = 70 (29.7 bits), Expect = 5.5e-13, Sum P(3) = 5.5e-13
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEA 57
R+ V+NLP TE+ L FS+ G +++ + + K + FAFI F + A +A
Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 510 (184.6 bits), Expect = 2.3e-72, Sum P(3) = 2.3e-72
Identities = 117/287 (40%), Positives = 163/287 (56%)
Query: 284 PSSSSKDVQQEVLE-SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
P+++ D E + S RLFVRNL Y E EL FS FG + E+H+ D SKG
Sbjct: 279 PTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGF 338
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXX 402
AYV YA P++A A LD IFQGRLLH++PA KK+ E H + K KQ
Sbjct: 339 AYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQKKTYKLDE-HELSKLPLKKQKQIK- 396
Query: 403 XXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVI 462
+ EA+ +T +WNSL+M D V+ ++A + GVSK+DLLD ++D AV+ A ET VI
Sbjct: 397 ---RKQEAASSTFSWNSLYMNADAVMSSVAERIGVSKADLLDPTSSDAAVKQAHAETHVI 453
Query: 463 AETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD 522
ETK GVN+ + ++ +R N LVKN Y + +L K+F FG +
Sbjct: 454 QETKAYFKANGVNLDAFKQ--------RERGNLAILVKNFSYGTKTEDLRKLFEPFGQIT 505
Query: 523 KVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569
++++P + T+A+V F P EA AFK LAY++ L+LE AP D+
Sbjct: 506 RLLMPPSGTIAIVAFARPDEAQKAFKSLAYRKLGDSILFLEKAPKDL 552
Score = 418 (152.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 107/332 (32%), Positives = 173/332 (52%)
Query: 406 KASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAET 465
+ EA+ +T +WNSL+M D V+ ++A + GVSK+DLLD ++D AV+ A ET VI ET
Sbjct: 397 RKQEAASSTFSWNSLYMNADAVMSSVAERIGVSKADLLDPTSSDAAVKQAHAETHVIQET 456
Query: 466 KKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVI 525
K GVN+ + ++ +R N LVKN Y + +L K+F FG + +++
Sbjct: 457 KAYFKANGVNLDAFKQ--------RERGNLAILVKNFSYGTKTEDLRKLFEPFGQITRLL 508
Query: 526 LPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAV 585
+P + T+A+V F P EA AFK LAY++ L+LE AP D+ +
Sbjct: 509 MPPSGTIAIVAFARPDEAQKAFKSLAYRKLGDSILFLEKAPKDLFEADVPPQNPLPETKA 568
Query: 586 VGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI 645
V + + EG D + + + +LF+KNLNF T +++L + F +G +
Sbjct: 569 VSQGFSTADTFAAD-EG------DEEVMATATLFIKNLNFSTTNQSLIEAFRP--LDGFV 619
Query: 646 LS-VKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703
+ +K K KN G+ +SMGFGF +F + A + G LD H L+++ H D
Sbjct: 620 SARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDA 679
Query: 704 QVVKKAEKDKSS-----TKLLVRNVAFEAQRK 730
++ E TK++++N+ F+A +K
Sbjct: 680 AEERRKEDTAKKIAARRTKIIIKNLPFQATKK 711
Score = 163 (62.4 bits), Expect = 2.3e-72, Sum P(3) = 2.3e-72
Identities = 44/148 (29%), Positives = 77/148 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ V LP +T D+L+ F + +TDA ++ R+ F+GF++ + A++A+ Y
Sbjct: 4 TRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL-----PKRRIGFVGFKSSEAAQQAVSY 58
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
FNK+Y+ +IS +IA+ + R SR + +D L KR + TI+
Sbjct: 59 FNKTYMRMSKISVDIAKPIDAEPAHRKDSRTAQP------DDALGNNLKRKR-DGDTIK- 110
Query: 121 VTENDDPQLLEFLQVMQPRVKSKMWAND 148
D + E+L ++Q K++ WAND
Sbjct: 111 -----DSKTQEYLSLLQQPSKTRTWAND 133
Score = 106 (42.4 bits), Expect = 2.3e-72, Sum P(3) = 2.3e-72
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ +KNL F+ +++R FG + G++ SV+V K + GFGF +F S A N
Sbjct: 699 IIIKNLPFQATKKDVRSLFGAY---GQLRSVRVPKKFDRS---ARGFGFADFVSAREAEN 752
Query: 678 VCRDLQGTILDGHALILQLCHAKK-D-EQVVKKAEK 711
L+ T L G L+L+ + + D E+ +++ EK
Sbjct: 753 AMDALKNTHLLGRRLVLEFANEEAIDAEEEIQRIEK 788
Score = 100 (40.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 32/122 (26%), Positives = 55/122 (45%)
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+K +A E A+ L + D +I+ R+ +R LFV+NL+++T + L F
Sbjct: 260 EKPEAESPEKPAESDLTKAPTAAEVDTNIENIRISAR-LFVRNLSYETKESELEPVFSPF 318
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G+I + V + S GF ++++ + A R+L G I G L +
Sbjct: 319 ---GKIEEIHVAFDTRF--TTSKGFAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQ 373
Query: 700 KK 701
KK
Sbjct: 374 KK 375
Score = 98 (39.6 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ ++R F +G + V V K + ++G + + A A++
Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVR-VPKKFDRSARGFGFADFVSAREAENAMDA 756
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQE 385
L N+ GR L V+ ++++ D +E
Sbjct: 757 LKNTHLLGRRL-VLEFANEEAIDAEE 781
Score = 98 (39.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 44/193 (22%), Positives = 78/193 (40%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ES R+FV LP T T D+L++HF +V++ H++ KR I +V + E+A +
Sbjct: 1 MESTRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL----PKRR--IGFVGFKSSEAAQQ 54
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGN-T 414
A+ + + + + V A+ + + T+Q L + T
Sbjct: 55 AVSYFNKTYMRMSKISVDIAKPIDAEPAHRKDSRTAQPDDALGNNLKRKRDGDTIKDSKT 114
Query: 415 KAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVI--AETKKALTNA 472
+ + SL +P A + D D A + + + + + A+ KKA
Sbjct: 115 QEYLSLLQQPSKT-RTWANDDQLPDPDETDSHAQEQEQPFDVDDQEELTYAQRKKAKLGQ 173
Query: 473 GVNVSSLEEFSAG 485
N SS AG
Sbjct: 174 DANESSHVPVVAG 186
Score = 82 (33.9 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
++KNLP+ +++ ++ +FG +G L V +P S + F+ EA A L
Sbjct: 700 IIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKN 759
Query: 553 KRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG 602
G L LE+A + + + +K VGE R L Q+L G
Sbjct: 760 THLLGRRLVLEFANEEAIDAEEEIQRIEKK---VGEQ-LDRVKL-QKLTG 804
Score = 73 (30.8 bits), Expect = 4.7e-17, Sum P(3) = 4.7e-17
Identities = 31/134 (23%), Positives = 45/134 (33%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR-----SKGIAYVLY 347
+EV+ + LF++NL ++ T L E F I D K S G + +
Sbjct: 586 EEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADF 645
Query: 348 AIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKA 407
A A+ V++ L V+ A HK D E K + K
Sbjct: 646 KTKAQAQAALAVMNGYTLDRHTL-VVRASHK-GMDAAEERRKEDTAKKIAARRTKIIIKN 703
Query: 408 SEASGNTKAWNSLF 421
K SLF
Sbjct: 704 LPFQATKKDVRSLF 717
Score = 65 (27.9 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 27/110 (24%), Positives = 48/110 (43%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKL-MRTKDGKSRQFAFIGFRTEQEAEEAI- 58
+R+ V+NL E L FS G+I + + T+ S+ FA++ + A EA
Sbjct: 295 ARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYR 354
Query: 59 ----KYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEK 104
K F L S + K+ + + S+ LKK+K++ ++
Sbjct: 355 NLDGKIFQGRLLHILPASQKKTYKLDEHEL----SKLPLKKQKQIKRKQE 400
Score = 59 (25.8 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 32/122 (26%), Positives = 51/122 (41%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKN + LR F G+IT +L+ G A + F EA++A K
Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQIT--RLLMPPSGT---IAIVAFARPDEAQKAFKSLA 534
Query: 63 KSYLDTCRISCEIARK-VGDPNMPRPWSRYSLKKEKEVSEDEKNP-VLAAKRGEKKTIEK 120
L + E A K + + ++P P + L + K VS+ AA G+++ +
Sbjct: 535 YRKLGDSILFLEKAPKDLFEADVP-PQN--PLPETKAVSQGFSTADTFAADEGDEEVMAT 591
Query: 121 VT 122
T
Sbjct: 592 AT 593
Score = 40 (19.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 696 LCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQ 728
L A +V E + S +L VRN+++E +
Sbjct: 275 LTKAPTAAEVDTNIENIRISARLFVRNLSYETK 307
Score = 40 (19.1 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 49 RTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80
+ +QEA + +N Y++ + +A ++G
Sbjct: 396 KRKQEAASSTFSWNSLYMNADAVMSSVAERIG 427
Score = 38 (18.4 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 574 STSKGNQKNDAVVGEHD-AKRALLEQQLEGVTDADIDPDRVESR 616
S + DA+ H +R +LE E DA+ + R+E +
Sbjct: 746 SAREAENAMDALKNTHLLGRRLVLEFANEEAIDAEEEIQRIEKK 789
>RGD|1308928 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0040019 "positive regulation
of embryonic development" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473973 IPI:IPI00777247 Ensembl:ENSRNOT00000060041
UCSC:RGD:1308928 Uniprot:D3ZUN0
Length = 451
Score = 343 (125.8 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 79/220 (35%), Positives = 120/220 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + EDR R F+ G +TD L TK+GK R+F FIGF++E+EA+ A+ +
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFAAFGTLTDCSLKFTKEGKFRKFGFIGFKSEEEAQAALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLK--KEKEVSEDEKNPVLAAKRGEKKTI 118
F++S++DT RI+ E + GDP+ PR WS+++ K + K+ S+D P K +KK +
Sbjct: 62 FHRSFIDTSRITVEFCKSFGDPSKPRAWSKHAQKPSQPKQPSQDSI-PSDTKKDKKKKKV 120
Query: 119 EKVTEN--DDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSI 176
E +D + EFL + Q R + WAND L + KAK S +
Sbjct: 121 PSDLEKLKEDAEFQEFLSIHQKRTQVATWANDALEAELPKAKAKPSSDYLNFDSDSNSDS 180
Query: 177 TLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRV 216
+ + + + + + K A EL SDMDY KS++
Sbjct: 181 GQESEEEPAGEDGEEEQGLQPKAAVQKEL-SDMDYLKSKM 219
Score = 95 (38.5 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 16/33 (48%), Positives = 28/33 (84%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGN 324
++++ +SGRLFVRNL YT++E++L + FS +G+
Sbjct: 395 EEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGD 427
Score = 77 (32.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/102 (21%), Positives = 45/102 (44%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK----Y 60
++ P VTE + +F + + +++R G + F+ +E+E ++A+K Y
Sbjct: 298 LRGAPFNVTEKNVLEFLAPLKPVA-IRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNREY 356
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSED 102
Y++ R A + + PW +L + +E ED
Sbjct: 357 MGGRYIEVFREKQASAARGAPKSSSAPWQGRTLGEHEE-EED 397
Score = 62 (26.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ L S +F V+NL Y SSE +L K+F +G
Sbjct: 396 EDLADSGRLF-VRNLSYTSSEEDLEKLFSAYG 426
Score = 62 (26.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644
+ D +S LFV+NL++ + +E+L K F + +G+
Sbjct: 395 EEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGDQGQ 430
>TAIR|locus:2166359 [details] [associations]
symbol:AT5G05720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00534152
RefSeq:NP_196191.2 UniGene:At.54733 ProteinModelPortal:F4K0T3
SMR:F4K0T3 EnsemblPlants:AT5G05720.1 GeneID:830456
KEGG:ath:AT5G05720 Uniprot:F4K0T3
Length = 451
Score = 284 (105.0 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 77/165 (46%), Positives = 99/165 (60%)
Query: 1 SRICVKNLP-KYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
S I VKNLP K+VTE+RLRD FS+KGEI D KL R DGKSRQFA+IGFRTEQEA++AI
Sbjct: 2 SWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAIT 61
Query: 60 YFNKSYLDTCRISCEIA----RKVGDPNMPRPWSRYS-----LKKEKEVSED---EKNPV 107
Y NK ++DT RIS E+A R+ G N + Y+ +KK+ EVS D E N
Sbjct: 62 YVNKCFIDTYRISVEVADPPPREEGKENTEHFSNAYAKGDKKIKKKPEVSPDGADEPNKA 121
Query: 108 LAAKRGEKKTIE-KVTE--NDDPQLLEFLQVMQPRVKSKMWANDT 149
+ KKT + KV DD +E+ + R K + +D+
Sbjct: 122 KISLLDSKKTRKIKVVALVGDDVSDMEYYK---SRTKKNLSDSDS 163
Score = 145 (56.1 bits), Expect = 8.7e-19, Sum P(3) = 8.7e-19
Identities = 66/219 (30%), Positives = 107/219 (48%)
Query: 438 SKSDLLD-REANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHV 496
+K LLD ++ + V +G+ E K+ T N+S + S +T G + + HV
Sbjct: 121 AKISLLDSKKTRKIKVVALVGDDVSDMEYYKSRTKK--NLSDSD--SDCETYGCEDAIHV 176
Query: 497 FLVK-NLPYDSSEGELA-KMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKR 554
F + ++ D + E +FG FG D VVFLEP+EA A KG+ +
Sbjct: 177 FPIDGDIEADRVDKEFTIHVFG-FGHQD------------VVFLEPIEAREALKGMGVQA 223
Query: 555 YKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRAL-LEQQLEGVTDADIDP--D 611
+ + AP D+L + + N+ N + V E+D +R L L+QQ+ G+ D+DI
Sbjct: 224 LQRCSP-VSGAPRDILEPKALADNNE-NTSDVEENDVRRRLNLDQQV-GI-DSDITEVCP 279
Query: 612 RVESRSLFVKNLN-FKTCDENLRKHFGEHIKEGRILSVK 649
+ F + + DE+L+KH E +K+G+ILS K
Sbjct: 280 LYDCCGRFETMYSELQDTDESLKKHLTELVKQGKILSFK 318
Score = 109 (43.4 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 683 QGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+GT++DGHALIL K V K +KD TKL V+N+AFEA K
Sbjct: 318 KGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMK 365
Score = 95 (38.5 bits), Expect = 8.7e-19, Sum P(3) = 8.7e-19
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 301 LFVRNLPYT-ATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+ V+NLP TE+ LR+ FS+ G +++V + D K S+ AY+ + + A AI
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGK-SRQFAYIGFRTEQEAQDAITY 62
Query: 360 LDNSIFQGRLLHVM----PARHKKSSDKQELHNSTSQGTKTLKQ 399
++ + V P R + + + N+ ++G K +K+
Sbjct: 63 VNKCFIDTYRISVEVADPPPREEGKENTEHFSNAYAKGDKKIKK 106
Score = 73 (30.8 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 30/118 (25%), Positives = 60/118 (50%)
Query: 284 PSSS-SKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
PS + KD+ ++ + + +L V+N+ + AT E+R+ F+ FG + V + + TK
Sbjct: 336 PSGTVGKDLDKDTILT-KLHVKNIAFEATMKEVRQLFTPFGQIKSVGL--PERTKGRYAA 392
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK---QELHNSTSQGTKTL 397
L ++ S++R + L I ++ + M A +S+ K QE +N + + T+
Sbjct: 393 CSSLTSLNASSTRYLPSLQ-VIEWKKVDNSMKAIRYRSAAKYVDQENNNPKKRKSSTV 449
Score = 70 (29.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 162 SENISQAIKGGEKSITL--HVKSD------KSNV-ITDSQATEKSKNAA--ADELMSDMD 210
+E+ S A G+K I V D K+ + + DS+ T K K A D++ SDM+
Sbjct: 90 TEHFSNAYAKGDKKIKKKPEVSPDGADEPNKAKISLLDSKKTRKIKVVALVGDDV-SDME 148
Query: 211 YFKSRVKKD 219
Y+KSR KK+
Sbjct: 149 YYKSRTKKN 157
Score = 55 (24.4 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILPS-TK 530
VKN+ ++++ E+ ++F FG + V LP TK
Sbjct: 355 VKNIAFEATMKEVRQLFTPFGQIKSVGLPERTK 387
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 136 (52.9 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 38/115 (33%), Positives = 62/115 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFVR LP TA+ + L E FS+ G + +V DK+ K+ +G YV +++ + A RA++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKE-KKCRGFGYVTFSMEDDAQRALKEV 64
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTK 415
++ + + V A+ KK DK+ N+ KT K + S+ SG TK
Sbjct: 65 --KLYDDQKIFVTVAK-KKLDDKKRKKNA-----KTNKDSGDT--EESQKSGETK 109
Score = 131 (51.2 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 37/135 (27%), Positives = 70/135 (51%)
Query: 271 EEDANGEIVDPGNPSSSSKD-VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVH 329
++D + + + PS ++ + +V E +F+RNL + + E+ L E +FG +S V
Sbjct: 410 DDDDDDDDSEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVR 469
Query: 330 IVVDKDTKRSKGIAYVLYAIPESASRAIEV-LDNSIFQG-----RLLHVMPARHKKSSDK 383
+V++ DT SKG A+ + E+A + I LD F G R L+++ A ++ + K
Sbjct: 470 VVMNPDTGVSKGCAFAQFKSKEAAEKCIAAALDEKEFSGIKLDGRRLNILMAINRDDAAK 529
Query: 384 -QELHNSTSQGTKTL 397
++ T G++ L
Sbjct: 530 FKDKKVKTHTGSRNL 544
Score = 131 (51.2 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 49/200 (24%), Positives = 95/200 (47%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAA 545
K+ N +++NL + + EL ++F KFG++ + +P K A V F EA
Sbjct: 120 KKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEK 179
Query: 546 AFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTD 605
A + K + P+ ++W S+ ++S+ + ++ H A+ ++ +G+
Sbjct: 180 ARAAMNRKAIRDRPVEVDWTTSN--TESADPEDTEE------PHKAEETTSTEKFKGIRK 231
Query: 606 ADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLK-NGKNVSMGF 664
+++SR L ++NL+FK +++L++ F E G +L K+ LK +GK GF
Sbjct: 232 I-----KLKSR-LIIRNLSFKCEEDDLKQIFSEF---GTVLEAKIP--LKPDGKK--RGF 278
Query: 665 GFIEFDSVETATNVCRDLQG 684
F+ F + A + G
Sbjct: 279 AFVLFKRMPEAGKALTAMNG 298
Score = 124 (48.7 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E+G L +RNL + +DEL++ FSKFG V E I + D K+ KG A+V + A +A
Sbjct: 122 ENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKK-KGFAFVQFKCVSEAEKA 180
Query: 357 IEVLDNSIFQGRLLHV-MPARHKKSSDKQELH--NSTSQGTKTLK 398
++ + R + V + +S+D ++ + + T T K
Sbjct: 181 RAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEK 225
Score = 121 (47.7 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 41/129 (31%), Positives = 67/129 (51%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
K +++ L+S RL +RNL + ED+L++ FS+FG V E I + D K+ +G A+VL+
Sbjct: 227 KGIRKIKLKS-RLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKK-RGFAFVLFK 284
Query: 349 -IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKA 407
+PE A +A+ ++ + R + V A K DK L ++ +K+ K
Sbjct: 285 RMPE-AGKALTAMNGKKIKDRQVAVDWAIAK---DKY-LATQSASAAGNIKEENVTG-KV 338
Query: 408 SEASGNTKA 416
EA N A
Sbjct: 339 EEADENKDA 347
Score = 118 (46.6 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 37/130 (28%), Positives = 63/130 (48%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ ++NL ED L+ FS+ G + +AK+ DGK R FAF+ F+ EA +A+
Sbjct: 236 SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTA 295
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRY-SLKKEK---EVSEDEKNPVLAAKRGEKK 116
N + +++ + A + S ++K+E +V E ++N K KK
Sbjct: 296 MNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKKSISKK 355
Query: 117 TIEKVTENDD 126
+ E+DD
Sbjct: 356 SDSSEDEDDD 365
Score = 111 (44.1 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 39/154 (25%), Positives = 74/154 (48%)
Query: 477 SSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKT 531
+S E+F + LK +++NL + E +L ++F +FG++ + +P +
Sbjct: 221 TSTEKFKGIRKIKLKSR---LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRG 277
Query: 532 LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA-PSD--VLSQSSTSKGNQKNDAVVGE 588
A V+F EA A + K+ K + ++WA D + +QS+++ GN K + V G+
Sbjct: 278 FAFVLFKRMPEAGKALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGK 337
Query: 589 -------HDAKRALLEQQLEGVTDADIDPDRVES 615
DAK+ + ++ + D D D D +S
Sbjct: 338 VEEADENKDAKKKSISKKSDSSEDEDDDDDDDDS 371
Score = 104 (41.7 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
V+ LP+ + + L + FS+ G + + ++ K+ K R F ++ F E +A+ A+K K
Sbjct: 8 VRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV-KL 66
Query: 65 YLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKV 121
Y D +I +A+K D KK + ++D + + K GE K E++
Sbjct: 67 Y-DDQKIFVTVAKKKLDDK--------KRKKNAKTNKDSGDTEESQKSGETKNTEEI 114
Score = 102 (41.0 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 35/147 (23%), Positives = 65/147 (44%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ ++NL +D L+ FS+ G + + ++ DGK + FAF+ F+ EAE+A N
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMN 185
Query: 63 KSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEK-NPVLAAKRGEKKTIEKV 121
+ + + E+ + P K +E + EK + K + I +
Sbjct: 186 RKAIRDRPV--EVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNL 243
Query: 122 T---ENDD-PQLL-EFLQVMQPRVKSK 143
+ E DD Q+ EF V++ ++ K
Sbjct: 244 SFKCEEDDLKQIFSEFGTVLEAKIPLK 270
Score = 83 (34.3 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E R++F++NL+F + +E L + ++ G + V+V + G VS G F +F S E
Sbjct: 437 EGRTIFIRNLSFDSEEEGLEEVL---LQFGELSYVRVVMNPDTG--VSKGCAFAQFKSKE 491
Query: 674 TATNVC------RDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
A ++ G LDG L + L +D+ K +K K+ T
Sbjct: 492 AAEKCIAAALDEKEFSGIKLDGRRLNI-LMAINRDDAAKFKDKKVKTHT 539
Score = 66 (28.3 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 42/195 (21%), Positives = 73/195 (37%)
Query: 480 EEFSAGKTDGLKRSN---------HVFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL-P 527
++ S GKT K+ N ++NL +DS E L ++ +FG L +V++ P
Sbjct: 415 DDDSEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNP 474
Query: 528 STKTLALVVFLEPVEAAAAFKGLAY----KRYKGVPLYLEWAPSDVLSQSSTSKGNQKND 583
T F + AA K +A K + G+ L + ++L + + D
Sbjct: 475 DTGVSKGCAFAQFKSKEAAEKCIAAALDEKEFSGIKL--DGRRLNILMAINRDDAAKFKD 532
Query: 584 AVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEG 643
V H R L + EG+ A S + K F+ K ++ +
Sbjct: 533 KKVKTHTGSRNLYLAR-EGLIRAGTKAAEGISEADIAKRTRFEELKRARLKDINVYVSKT 591
Query: 644 RILSVKVKKHLKNGK 658
R+ + K + K
Sbjct: 592 RLCVHNLPKSVDKNK 606
Score = 64 (27.6 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 43/147 (29%), Positives = 63/147 (42%)
Query: 544 AAAFKGLAYKRYKGVP-LYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG 602
AA FK K + G LYL + L ++ T ++A + AKR E+ L+
Sbjct: 527 AAKFKDKKVKTHTGSRNLYLA---REGLIRAGTKAAEGISEADI----AKRTRFEE-LKR 578
Query: 603 VTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEG---RILSVKV---KKHLKN 656
DI+ V L V NL K+ D+N + G RI+ ++ KK +K
Sbjct: 579 ARLKDINV-YVSKTRLCVHNLP-KSVDKNKLFNLCVSAAGGKGVRIIECRIMYDKKPVKG 636
Query: 657 G-KNVSMGFGFIEFDSVETATNVCRDL 682
S+G+GF+EF E A R L
Sbjct: 637 QVMGQSLGYGFVEFQEHEHAIQALRHL 663
Score = 41 (19.5 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 707 KKAEKDKSSTKLLVRNVAFEAQ 728
K K K ++L++RN++F+ +
Sbjct: 227 KGIRKIKLKSRLIIRNLSFKCE 248
Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 701 KDEQVVKKAEKDKSSTKLLVRNVAFEAQ 728
K+ + + K K + L++RN++F+ +
Sbjct: 109 KNTEEIPSPTKKKENGWLIIRNLSFKCE 136
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 132 (51.5 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 32/100 (32%), Positives = 54/100 (54%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
+V+E ++++N + LRE FS FGN V +++D DT RS+G +V Y E A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEA 244
Query: 354 SRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
+A+ ++ GR+++V R +K ++Q EL Q
Sbjct: 245 QKAVSEMNGKEVNGRMIYV--GRAQKRIERQGELKRKFEQ 282
Score = 130 (50.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 66/282 (23%), Positives = 113/282 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D+ S+G +V + E+A+RAI+
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQ 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V H KS ++EL G K ++ E + +
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRRERELE----YGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 419 --SLF---MRPDTVVENIARKHGVSKSDLLDREANDLAV-----RIALGETQVIAETKKA 468
S F + ++++ R G + + E AV + G + +K
Sbjct: 210 IFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVI 525
+ G E+ K + + R V L VKNL + L K F +G++ KV+
Sbjct: 270 IERQGELKRKFEQI---KQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM 326
Query: 526 LPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 119 (46.9 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 596 LEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLK 655
L+++ E + I+ R + +L+VKNL+ D+ LRK F + G I S KV +
Sbjct: 276 LKRKFEQIKQERIN--RYQGVNLYVKNLDDGIDDDRLRKEFSPY---GTITSAKV---MT 327
Query: 656 NGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
G + S GFGF+ F S E AT ++ G I+ L + L K++ + +
Sbjct: 328 EGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 118 (46.6 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 34/128 (26%), Positives = 62/128 (48%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLE--SG-RLFVRNLPYTATEDELREHFSKFGNVSEVHI 330
A I G + ++QE + G L+V+NL +D LR+ FS +G ++ +
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKV 325
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNST 390
+ + SKG +V ++ PE A++A+ ++ I + L+V A+ K+ K L N
Sbjct: 326 MTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER-KAILTNQY 382
Query: 391 SQGTKTLK 398
Q T++
Sbjct: 383 MQRLATMR 390
Score = 110 (43.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVM 373
+ + +GR + +M
Sbjct: 73 NFEVIKGRPIRIM 85
Score = 102 (41.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + + RLR+ FS G K+M G+SR F F+ + +EA++A+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 88 (36.0 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + + L D FS G I K++ + G SR + F+ F T++ A AI+ N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 82 (33.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 38/143 (26%), Positives = 65/143 (45%)
Query: 575 TSKGNQKND--AVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENL 632
T G ND VG ++R E++LE A + +E ++++KN D+ L
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRR---ERELE--YGAKV----MEFTNVYIKNFGEDMDDKRL 207
Query: 633 RKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
R+ F G LSVKV G+ S GFGF+ + + E A ++ G ++G +
Sbjct: 208 REIFSAF---GNTLSVKVMMD-DTGR--SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 693 ILQLCHAKKDEQ--VVKKAEKDK 713
+ + + Q + +K E+ K
Sbjct: 262 YVGRAQKRIERQGELKRKFEQIK 284
Score = 61 (26.5 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRT-KDGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVI----LPSTKTL--ALVVFLEPVEAAAAFKGLAY 552
V +L D +E L + F G + + + + ++L A + F +P +A A + +
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNF 74
Query: 553 KRYKGVPLYLEWAPSD 568
+ KG P+ + W+ D
Sbjct: 75 EVIKGRPIRIMWSQRD 90
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 173 (66.0 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 43/111 (38%), Positives = 57/111 (51%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPS-SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321
D I + V EE+ E D G K Q E GRL+V NLPYT T EL + F +
Sbjct: 79 DEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGE 138
Query: 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
G V +V IV DK T RS+G +V E A A+++ ++S GR + V
Sbjct: 139 AGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 102 (41.0 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 33/131 (25%), Positives = 59/131 (45%)
Query: 587 GEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL 646
GE++ R + D+ P +V + NL + + L+ FG+ + G +L
Sbjct: 198 GENEVMRTKIRDNNRSYVDS---PHKV-----YAGNLGWNLTSQGLKDAFGD--QPG-VL 246
Query: 647 SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
KV G+ S GFGFI F+S E + + G ++G AL L L +++++ V
Sbjct: 247 GAKVIYERNTGR--SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA-SEREKPTV 303
Query: 707 KKAEKDKSSTK 717
++ T+
Sbjct: 304 SPPSVEEGETE 314
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 136 (52.9 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 38/122 (31%), Positives = 69/122 (56%)
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
D +R +L+Q+ +D I + +L+VKNL+ + LR+ FG + G+I+S K
Sbjct: 281 DERREMLKQKF---SDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCY---GQIVSAK 334
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKA 709
V H +NG+ S GFGF+ F + E + R L G ++DG +++++ K+D +K+
Sbjct: 335 VMCH-ENGR--SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR--IKRL 389
Query: 710 EK 711
++
Sbjct: 390 QQ 391
Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + VKNL + + E RLR+ F G+I AK+M ++G+S+ F F+ F +E+++A +Y
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 61 FNKSYLDTCRISCEIARKVGD 81
N +D I +A + D
Sbjct: 364 LNGFLVDGKPIVVRVAERKED 384
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+L+VKNL+ L + F G ILS KV + +NG+ S GFGF++FD+ ++A
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPF---GSILSCKVVE--ENGQ--SKGFGFVQFDTEQSAV 165
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
+ L G+++ G L + KDE+ +D ST + V+N+
Sbjct: 166 SARSALHGSMVYGKKLFVAK-FINKDERAAMAGNQD--STNVYVKNL 209
Score = 110 (43.8 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+S ++V+NL T T+D L FS++G VS V +V+ RS+G +V + PE+A +A
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV-VVMRDGMGRSRGFGFVNFCNPENAKKA 258
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQEL 386
+E L + L V A K +++E+
Sbjct: 259 MESLCGLQLGSKKLFVGKAL--KKDERREM 286
Score = 110 (43.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 62/261 (23%), Positives = 112/261 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G L+V +L TE +L + FS V VH+ + T +S AY+ + P SAS A+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
L++S +G+ + +M ++ + ++ T G L K ++S +
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRR-----TRTGFANL------YVKNLDSSITSSCLE 129
Query: 419 SLFMRPDTVVE-NIARKHGVSKSD---LLDREANDLAVRIALGETQVIAETKKALTNAGV 474
+F +++ + ++G SK D E + ++ R AL + V KK +
Sbjct: 130 RMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYG--KKLFVAKFI 187
Query: 475 NVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVI-----LPST 529
N AG D S +V+ VKNL ++ L +F ++G++ V+ + +
Sbjct: 188 NKDERAAM-AGNQD----STNVY-VKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRS 241
Query: 530 KTLALVVFLEPVEAAAAFKGL 550
+ V F P A A + L
Sbjct: 242 RGFGFVNFCNPENAKKAMESL 262
Score = 105 (42.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + VKNL + VT+D L FSQ G ++ +MR G+SR F F+ F + A++A++
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL + E LRE F +G + ++ ++ RSKG +V ++ E + +A L
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENG-RSKGFGFVCFSNCEESKQAKRYL 364
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ 384
+ + G+ + V A K+ K+
Sbjct: 365 NGFLVDGKPIVVRVAERKEDRIKR 388
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 32/108 (29%), Positives = 51/108 (47%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
+S +++VKNL D+ L F ++ G + SV V +++G S GFGF+ F + E
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQY---GTVSSVVV---MRDGMGRSRGFGFVNFCNPE 253
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
A L G L L + KKDE+ ++ K K S + +
Sbjct: 254 NAKKAMESLCGLQLGSKKLFVGKA-LKKDER--REMLKQKFSDNFIAK 298
Score = 83 (34.3 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEA 57
+ + VKNL +T L F G I K++ ++G+S+ F F+ F TEQ A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSKGFGFVQFDTEQSAVSA 167
Score = 63 (27.2 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 22/63 (34%), Positives = 28/63 (44%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V +L VTE L D FS + L R GKS +A+I F + A A+ N
Sbjct: 25 VGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNH 84
Query: 64 SYL 66
S L
Sbjct: 85 SDL 87
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKG 578
A + F P A+ A L + KG + + W+ D+ + T G
Sbjct: 65 AYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTG 110
Score = 44 (20.5 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 27/111 (24%), Positives = 46/111 (41%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS--TKTLALVVFLEPVEAAAAFKGLAYKR 554
VKNL + L +MF FGS+ KV+ + +K V F A +A L
Sbjct: 116 VKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSM 175
Query: 555 YKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTD 605
G L++ + +++ + A+ G D+ ++ +E VTD
Sbjct: 176 VYGKKLFV----AKFINKDERA-------AMAGNQDSTNVYVKNLIETVTD 215
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 128 (50.1 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
+V+E ++++N + LRE FS FGN V +++D D+ RS+G +V Y E A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEA 244
Query: 354 SRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+A+ ++ GR+++V A+ K+ + EL Q
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQ-KRIERQSELKRKFEQ 282
Score = 119 (46.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 67/283 (23%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D+ S+G +V + E+A+RAI+
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQ 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V H KS ++EL G K ++ E + +
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRRERELE----YGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 419 --SLF---MRPDTVVENIARKHGVSKSDLLDREANDLAV-----RIALGETQVIAETKKA 468
S F + ++++ R G + + E AV + G + +K
Sbjct: 210 IFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 469 LTNAGVNVSSLE-EFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ S L+ +F K + + R V L VKNL + L K F +G++ KV
Sbjct: 270 IERQ----SELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+ +K V F P EA A + + PLY+ A
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 118 (46.6 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 35/115 (30%), Positives = 60/115 (52%)
Query: 592 KRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVK 651
+++ L+++ E + I+ R + +L+VKNL+ D+ LRK F + G I S KV
Sbjct: 272 RQSELKRKFEQIKQERIN--RYQGVNLYVKNLDDGIDDDRLRKEF---LPYGTITSAKV- 325
Query: 652 KHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
+ G + S GFGF+ F S E AT ++ G I+ L + L K++ + +
Sbjct: 326 --MTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 111 (44.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL +D LR+ F +G ++ ++ + SKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ I + L+V A+ K+ K L N Q T++
Sbjct: 354 NGRIVSTKPLYVALAQRKEER-KAILTNQYMQRLATMR 390
Score = 103 (41.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + + RLR+ FS G K+M G+SR F F+ + +EA++A+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 103 (41.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L++ +L TE L E FS G + + + D T+RS AY+ + P A RA++ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVM 373
+ + +GR + +M
Sbjct: 73 NFEVIKGRPIRIM 85
Score = 86 (35.3 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + + L D FS G I K++ + G SR + F+ F T + A AI+ N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 83 (34.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 38/143 (26%), Positives = 66/143 (46%)
Query: 575 TSKGNQKND--AVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENL 632
T G ND VG ++R E++LE A + +E ++++KN D+ L
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRR---ERELE--YGAKV----MEFTNVYIKNFGEDMDDKRL 207
Query: 633 RKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
R+ F G LSVKV +G+ S GFGF+ + + E A ++ G ++G +
Sbjct: 208 REIFSAF---GNTLSVKVMMD-DSGR--SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 693 ILQLCHAKKDEQ--VVKKAEKDK 713
+ + + Q + +K E+ K
Sbjct: 262 YVGRAQKRIERQSELKRKFEQIK 284
Score = 62 (26.9 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 12 VTEDRLRDFFSQKGEITDAKLMRT-KDGKSRQFAFIGFRTEQEAEEAIKYFN 62
VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568
A + F +P +A A + ++ KG P+ + W+ D
Sbjct: 55 AYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD 90
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 151 (58.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+ + + ++V+N+ TE+ELR+HFS+ G ++ ++ D+ K SKG +V ++ PE
Sbjct: 297 QKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPE 355
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQEL 386
A A++ +F G+ L+V A+ KK K +L
Sbjct: 356 EAIDAVKTFHGQMFHGKPLYVAIAQ-KKEDRKMQL 389
Score = 144 (55.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 36/84 (42%), Positives = 47/84 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I VKN+ VTE+ LR FSQ G IT KLM + GKS+ F F+ F T +EA +A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 61 FNKSYLDTCRISCEIARKVGDPNM 84
F+ + IA+K D M
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKM 387
Score = 129 (50.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 36/128 (28%), Positives = 59/128 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ VKNLP+ VT L+D F + G I K+ +DGKSR + F+ F E A AI+ N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 63 KSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGE-KKTIEKV 121
+ + I + + + + +P +Y+ K + D +L K E K +
Sbjct: 174 STIVADKEIY--VGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 122 TENDDPQL 129
D+ +L
Sbjct: 232 IAKDENRL 239
Score = 128 (50.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR-SKGIAYVLYAIPESASRAIEV 359
L+++NL +ED LRE F++FG + V + + KD R +G A+V + PE A RA E
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQEL 386
++ + F + L+V R +K +++++L
Sbjct: 261 VNGTKFGSKCLYV--GRAQKKAEREQL 285
Score = 120 (47.3 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 41/144 (28%), Positives = 66/144 (45%)
Query: 566 PSDVLSQSSTSKGNQKNDAV--VGEHDAKRALLEQQLEGVTDADIDPDRVESR--SLFVK 621
P D + T G + VG K+A EQ L + ++ ++ +++VK
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQ-KKAEREQLLREQFKEKHEEQKMIAKVSNIYVK 309
Query: 622 NLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681
N+N +E LRKHF + G I S K+ K GK S GFGF+ F + E A + +
Sbjct: 310 NVNVAVTEEELRKHFSQC---GTITSTKLMCDEK-GK--SKGFGFVCFSTPEEAIDAVKT 363
Query: 682 LQGTILDGHALILQLCHAKKDEQV 705
G + G L + + K+D ++
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKM 387
Score = 116 (45.9 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 26/85 (30%), Positives = 49/85 (57%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +FV+NLP + T L++ F KFGN+ + +D K S+G +V + ++A AI+
Sbjct: 112 GNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK-SRGYGFVQFEQEDAAHAAIQ 170
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDK 383
L+++I + ++V + K +D+
Sbjct: 171 TLNSTIVADKEIYV--GKFMKKTDR 193
Score = 105 (42.0 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 604 TDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
TD + P+ + +L++KNL+ ++ LR+ F E G+I+S+ + K +N + G
Sbjct: 191 TDR-VKPEE-KYTNLYMKNLDADVSEDLLREKFAEF---GKIVSLAIAKD-EN--RLCRG 242
Query: 664 FGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD-EQVVKKAEKDKSSTKLLVRN 722
+ F+ FD+ E A + GT L + K + EQ++++ K+K + ++
Sbjct: 243 YAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAK 302
Query: 723 VA 724
V+
Sbjct: 303 VS 304
Score = 93 (37.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L + TE L + F++F +++ V + D + RS Y + + A+ AIE
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 361 DNSIFQGRLLHVM 373
+NS+ G+++ VM
Sbjct: 86 NNSLLNGKMIRVM 98
Score = 88 (36.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FVKNL + L+ F K G I+S KV L++GK S G+GF++F+ + A
Sbjct: 113 NVFVKNLPESVTNAVLQDMFK---KFGNIVSCKVAT-LEDGK--SRGYGFVQFEQEDAAH 166
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
+ L TI+ + + K D VK EK T L ++N+
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEEK---YTNLYMKNL 208
Score = 85 (35.0 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KNL V+ED LR+ F++ G+I + + ++ R +AF+ F ++A A +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 61 FN 62
N
Sbjct: 261 VN 262
Score = 71 (30.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 49/194 (25%), Positives = 84/194 (43%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V +L VTE L D F++ +T +L + G+S + + F + Q+A AI+ N
Sbjct: 28 VGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNN 87
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLA---AKRGEKKTIEK 120
S L+ I + V P+ R + K + E N VL K G + +
Sbjct: 88 SLLNGKMI--RVMWSVRAPDARR--NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143
Query: 121 VT-ENDDPQLLEFLQVMQPRVKSKMWANDTLIG-LMADQKAKVSENISQA--IKGGEKSI 176
T E+ + F+Q Q A TL ++AD++ V + + + +K EK
Sbjct: 144 ATLEDGKSRGYGFVQFEQEDAAHA--AIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYT 201
Query: 177 TLHVKSDKSNVITD 190
L++K+ ++V D
Sbjct: 202 NLYMKNLDADVSED 215
Score = 67 (28.6 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 27/89 (30%), Positives = 37/89 (41%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYK 553
VKN+ +E EL K F + G++ L +K V F P EA A K +
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQ 367
Query: 554 RYKGVPLYLEWAPS--DVLSQSSTSKGNQ 580
+ G PLY+ A D Q GN+
Sbjct: 368 MFHGKPLYVAIAQKKEDRKMQLQVQFGNR 396
Score = 54 (24.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 495 HVFLVKNLPYDSSEGELAKMFGKFGSL 521
+VF VKNLP + L MF KFG++
Sbjct: 113 NVF-VKNLPESVTNAVLQDMFKKFGNI 138
Score = 53 (23.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 486 KTDGLK-RSNHVFL-VKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-----LALVVFL 538
KTD +K + L +KNL D SE L + F +FG + + + + A V F
Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249
Query: 539 EPVEAAAAFKGLAYKRYKGVPLYL 562
P +A A + + ++ LY+
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYV 273
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 156 (60.0 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 75/344 (21%), Positives = 138/344 (40%)
Query: 72 SCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLE 131
S +IAR++ +P S+ KKE S ++ + + + E +E++ P E
Sbjct: 42 SKQIAREIASKEK-KPKSK---KKEPTPSSSSESESESESESDSSSSESESEDEKPVKKE 97
Query: 132 FLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHVKSD----KSNV 187
+ + S +D+ + A SE+ S++ EK K++ K
Sbjct: 98 VKKEAKKAESSSESESDSSDSDEEMKDASSSESDSESESEEEKKPAKSAKAEPKVVKKAE 157
Query: 188 ITDSQATEKSKNAAADELMSDMDYFKSRVK----KDWXXXXXXXXXXXXXXXXXXXXXXX 243
++S++++ S + + DE + + K++ K D
Sbjct: 158 SSESESSDSSDSDSDDESSEEEEVPKAKAKAAESSDSEDSDSESEEEAPAKAKGDAKTSK 217
Query: 244 XXXXXXXXXXXXXCDSIIKDSIHSGVGEEDANGEIVDPGN-----PSSSSKDVQQEVLES 298
DS ++S SG ED++ P+++SK + E S
Sbjct: 218 EESDSDSDSSESSSDSD-EESGSSGSESEDSDKPADSKKRKAEEEPAAASKKSKTEEGAS 276
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
LFV NL + TE+ L + F +FG +S I+ ++DT RS+G YV + A++A E
Sbjct: 277 ANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYE 335
Query: 359 VLDNSIFQGRLLHV-----MPARHKKSSDKQELHN-STSQGTKT 396
+ GR +++ PA + K+ N + S G +T
Sbjct: 336 AMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQT 379
Score = 130 (50.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
ES LFV NLP++A ED + E F GNV + + D ++ R KG YV Y+ + A +A
Sbjct: 382 ESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKA 441
Query: 357 IEVLDNSIFQGR 368
L + GR
Sbjct: 442 YNELQGAEIDGR 453
Score = 120 (47.3 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
D ES +LFV NL F ++++ + FG +G +L +++ +++G+ GFG+++
Sbjct: 377 DQTSPESDTLFVGNLPFSANEDSVHEVFGP---QGNVLGIRLPTDMESGR--PKGFGYVQ 431
Query: 669 FDSVETATNVCRDLQGTILDGHALIL 694
+ SV+ A +LQG +DG + L
Sbjct: 432 YSSVDEARKAYNELQGAEIDGRPIRL 457
Score = 92 (37.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
+ + V NL VTE+ L F Q GE++ A++M +D G+SR F ++ F +A +A +
Sbjct: 277 ANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYE 335
Query: 60 YFNKSYLDTCRISCEIA 76
+ +D +I+ + A
Sbjct: 336 AMKEHEIDGRKINLDYA 352
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 42/198 (21%), Positives = 76/198 (38%)
Query: 22 SQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGD 81
S+K E T + ++ + +E E E+ +K K S E D
Sbjct: 58 SKKKEPTPSSSSESESESESESDSSSSESESEDEKPVKKEVKKEAKKAESSSESESDSSD 117
Query: 82 PNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKV----------TEND-DPQLL 130
+ + S + SE+EK P +AK E K ++K +++D D +
Sbjct: 118 SDEEMKDASSSESDSESESEEEKKPAKSAK-AEPKVVKKAESSESESSDSSDSDSDDESS 176
Query: 131 EFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHVKSDKSNVITD 190
E +V P+ K+K + D ++ E KG K+ SD + +
Sbjct: 177 EEEEV--PKAKAKAAESSD----SEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSESS 230
Query: 191 SQATEKSKNAAADELMSD 208
S + E+S ++ ++ SD
Sbjct: 231 SDSDEESGSSGSESEDSD 248
Score = 59 (25.8 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST------KTLALVVFLEPVEAAAA 546
S+ +F V NLP+ ++E + ++FG G++ + LP+ K V + EA A
Sbjct: 383 SDTLF-VGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKA 441
Query: 547 FKGLAYKRYKGVPLYLEWA 565
+ L G P+ L+++
Sbjct: 442 YNELQGAEIDGRPIRLDFS 460
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 128 (50.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 66/282 (23%), Positives = 113/282 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FG++ +V D+ S+G +V + E+A+RAI+
Sbjct: 99 GNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDE--YGSRGYGFVHFETQEAANRAIQ 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V H KS ++EL G K ++ E + +
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRRERELE----YGAKVMEFTNVYIKNFGEDMDDKRLKE 209
Query: 419 --SLF---MRPDTVVENIARKHGVSKSDLLDREANDLAV-----RIALGETQVIAETKKA 468
S F + +++N R G + + E AV + G + +K
Sbjct: 210 IFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVI 525
+ G E+ K + + R V L VKNL + L K F +G++ KV+
Sbjct: 270 IERQGELKRKFEQI---KQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM 326
Query: 526 LPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 119 (46.9 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 596 LEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLK 655
L+++ E + I+ R + +L+VKNL+ D+ LRK F + G I S KV +
Sbjct: 276 LKRKFEQIKQERIN--RYQGVNLYVKNLDDGIDDDRLRKEFSPY---GTITSTKV---MT 327
Query: 656 NGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
G + S GFGF+ F S E AT ++ G I+ L + L K++ + +
Sbjct: 328 EGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 118 (46.6 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
+V+E ++++N + L+E FS FGN V +++D ++ RS+G +V Y E A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEA 244
Query: 354 SRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
+A+ ++ GR+++V R +K ++Q EL Q
Sbjct: 245 QKAVTEMNGKEVNGRMVYV--GRAQKRIERQGELKRKFEQ 282
Score = 118 (46.6 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 34/128 (26%), Positives = 62/128 (48%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLE--SG-RLFVRNLPYTATEDELREHFSKFGNVSEVHI 330
A I G + ++QE + G L+V+NL +D LR+ FS +G ++ +
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKV 325
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNST 390
+ + SKG +V ++ PE A++A+ ++ I + L+V A+ K+ K L N
Sbjct: 326 MTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER-KAILTNQY 382
Query: 391 SQGTKTLK 398
Q T++
Sbjct: 383 MQRLATMR 390
Score = 109 (43.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L++ +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVM 373
+ + +GR + +M
Sbjct: 73 NFEVIKGRPIRIM 85
Score = 100 (40.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + + RL++ FS G K+M G+SR F F+ + +EA++A+
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 86 (35.3 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L D FS G+I K++ + G SR + F+ F T++ A AI+ N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 80 (33.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 37/143 (25%), Positives = 66/143 (46%)
Query: 575 TSKGNQKND--AVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENL 632
T G ND VG ++R E++LE A + +E ++++KN D+ L
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRR---ERELE--YGAKV----MEFTNVYIKNFGEDMDDKRL 207
Query: 633 RKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
++ F G LSVKV +G+ S GFGF+ + + E A ++ G ++G +
Sbjct: 208 KEIFSAF---GNTLSVKVMMD-NSGR--SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Query: 693 ILQLCHAKKDEQ--VVKKAEKDK 713
+ + + Q + +K E+ K
Sbjct: 262 YVGRAQKRIERQGELKRKFEQIK 284
Score = 60 (26.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 12 VTEDRLRDFFSQKGEITDAKLMRT-KDGKSRQFAFIGFRTEQEAEEAIKYFN 62
VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568
A + F +P +A A + ++ KG P+ + W+ D
Sbjct: 55 AYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD 90
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 139 (54.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 58/257 (22%), Positives = 105/257 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L EHFS FG + ++ D + SKG A+V + +A RAIE
Sbjct: 98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIE 155
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + +G V R K D++ EL + S+ T +K +K
Sbjct: 156 EMNGKLLKG--CKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 213
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ T ++ G VS + + ++ R G+ + +K +
Sbjct: 214 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV-ILPS---T 529
E+ + G + +KNL + +L F FGS+ +V ++ +
Sbjct: 274 ELKQMFEQLKRERIRGCQGVK--LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 530 KTLALVVFLEPVEAAAA 546
K L+ F P +A A
Sbjct: 332 KGFGLICFSSPEDATKA 348
Score = 116 (45.9 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L+++NL T +++LR FS FG++S V ++ ++ +SKG + ++ PE A++A+
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTE 351
Query: 360 LDNSIFQGRLLHVMPA-RH 377
++ I + L + A RH
Sbjct: 352 MNGRILGSKPLSIALAQRH 370
Score = 115 (45.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ F ++ G+ LSVKV +GK S GF
Sbjct: 179 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY---GKTLSVKVMTD-SSGK--SKGF 232
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
GF+ FDS E A ++ G ++G + + K + Q K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 276
Score = 112 (44.5 bits), Expect = 5.6e-15, Sum P(3) = 5.6e-15
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N +++ + E ++++N ++ L++ FSK+G V ++ D K SKG
Sbjct: 174 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGK-SKGF 232
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+V + E+A +A+E ++ G+L+ V A+ KK + EL Q
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ-KKVERQAELKQMFEQ 281
Score = 106 (42.4 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + ++RL+D FS+ G+ K+M GKS+ F F+ F + + A++A++
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 61 FN 62
N
Sbjct: 250 MN 251
Score = 104 (41.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 51/219 (23%), Positives = 87/219 (39%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TED L FS G V + I D+ T+RS G AYV + A +A++ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ I +G+ + +M ++ + + N K L + S K +S
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVF---IKNLDKSIDNKTLYEHFSAFGKILSSK 128
Query: 421 FMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLE 480
M D + A H ++S DR ++ ++ G + K S
Sbjct: 129 VMSDDQGSKGYAFVHFQNQS-AADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKAS 187
Query: 481 EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
EF+ +V+ +KN D + L +F K+G
Sbjct: 188 EFT-----------NVY-IKNFGGDMDDERLKDVFSKYG 214
Score = 103 (41.3 bits), Expect = 5.6e-15, Sum P(3) = 5.6e-15
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L + FS G+I +K+M G S+ +AF+ F+ + A+ AI+ N
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 158
Query: 63 KSYLDTCRI 71
L C++
Sbjct: 159 GKLLKGCKV 167
Score = 96 (38.9 bits), Expect = 5.6e-15, Sum P(3) = 5.6e-15
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
L++KNL+ DE LR F G I VKV + + G+ S GFG I F S E AT
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSF---GSISRVKVMQ--EEGQ--SKGFGLICFSSPEDATK 347
Query: 678 VCRDLQGTILDGHALILQL 696
++ G IL L + L
Sbjct: 348 AMTEMNGRILGSKPLSIAL 366
Score = 56 (24.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTED L FS G + ++ R + +S +A++ F +A++A+ N
Sbjct: 14 VGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMN 72
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 121 (47.7 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F + G I S KV + G + S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFSPY---GVITSAKV---MTEGGH-SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
E AT ++ G IL L + L K++ + +
Sbjct: 343 PEEATKAVTEMNGRILGTKPLYVALAQRKEERKAI 377
Score = 117 (46.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKNL V E L+D FS+ G++ K+MR G SR F F+ F+ +EA++A+
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMD 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 114 (45.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 69/284 (24%), Positives = 111/284 (39%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D S+G +V + E+A +AI
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAIT 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELH------NSTSQGTKTLKQXXXXXXKASEASG 412
++ + R + V H KS ++E+ T+ K L S
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSR 213
Query: 413 NTKAWNSLFMRPDTVVEN-----IARKHGVSKSDLLDREANDLAVRIA-LGETQVIAETK 466
K + MR D+ +KH ++ ++D +++ R+ +G Q E +
Sbjct: 214 FGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQ 273
Query: 467 KALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--K 523
L F K D L R V L VKNL + +L K F +G + K
Sbjct: 274 SELKR---------RFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAK 324
Query: 524 VILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
V+ +K V F P EA A + + PLY+ A
Sbjct: 325 VMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALA 368
Score = 113 (44.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 27/98 (27%), Positives = 54/98 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL + +++LR+ FS +G ++ ++ + SKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ I + L+V A+ K+ K L N Q T++
Sbjct: 354 NGRILGTKPLYVALAQRKEER-KAILTNQYMQRLSTVR 390
Score = 110 (43.8 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+E ++V+NL E L++ FS+FG + V ++ D D+ S+G +V + E A +
Sbjct: 188 MEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQK 246
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
A+ ++ GRLL+V A+ K+ + EL Q
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQ-KRVERQSELKRRFEQ 282
Score = 106 (42.4 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVM 373
+ + +G+ + +M
Sbjct: 73 NFEVIKGQPIRIM 85
Score = 101 (40.6 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+ ++ +E +++VKNL+ ++ L+ F G++LSVKV +++ S GF
Sbjct: 180 EVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRF---GKMLSVKV---MRDDSGHSRGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F E A D+ G + G L + + + Q K ++ L R
Sbjct: 234 GFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTR 290
Score = 88 (36.0 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G I K++ G SR F F+ F T + A++AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 62 (26.9 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568
A + F +P +A A + ++ KG P+ + W+ D
Sbjct: 55 AYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRD 90
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 120 (47.3 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F + G I S KV + G + S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFAPY---GMITSAKV---MTEGGH-SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
E AT ++ G I+ L + L K++ + +
Sbjct: 343 PEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAI 377
Score = 117 (46.2 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKNL V E L+D FSQ G+I K+MR G SR F F+ F ++A++A+
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 111 (44.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 62/275 (22%), Positives = 100/275 (36%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D S+G +V + E+A AI
Sbjct: 99 GNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQNAIR 156
Query: 359 VLDNSIFQGRLL---HVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTK 415
++ + R + H R +++ T+ K L S K
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGK 216
Query: 416 AWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVN 475
+ MR D+ K + + D+ + G + +K +
Sbjct: 217 ILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNEL 276
Query: 476 VSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS--TK 530
E+ K D L R V L VKNL + +L K F +G + KV+ +K
Sbjct: 277 KRRFEQM---KQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSK 333
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
V F P EA A + + PLY+ A
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 110 (43.8 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
LE ++V+NL E L++ FS+FG + V ++ D D+ S+G +V + E A +
Sbjct: 188 LEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQK 246
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
A+ ++ GRLL+V A+ K+ + EL Q
Sbjct: 247 AVTDMNGKEVSGRLLYVGRAQ-KRVERQNELKRRFEQ 282
Score = 110 (43.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 26/98 (26%), Positives = 54/98 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL + +++LR+ F+ +G ++ ++ + SKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ I + L+V A+ K+ K L N Q T++
Sbjct: 354 NGRIVGTKPLYVALAQRKEER-KAILTNQYIQRLSTMR 390
Score = 107 (42.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ +E +++VKNL+ + L+ F + G+ILSVKV +++ S GF
Sbjct: 180 EAELGARALEFTNIYVKNLHVDVDERCLQDLFSQF---GKILSVKV---MRDDSGHSRGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A D+ G + G L + + + Q K ++ L R
Sbjct: 234 GFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTR 290
Score = 106 (42.4 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVM 373
+ + +G+ + +M
Sbjct: 73 NFEVIKGQPIRIM 85
Score = 88 (36.0 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L D FS G I K++ G SR F F+ F T + A+ AI+ N
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 62 (26.9 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568
A + F +P +A A + ++ KG P+ + W+ D
Sbjct: 55 AYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRD 90
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 139 (54.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 58/257 (22%), Positives = 105/257 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L EHFS FG + ++ D + SKG A+V + +A RAIE
Sbjct: 156 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIE 213
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + +G V R K D++ EL + S+ T +K +K
Sbjct: 214 EMNGKLLKG--CKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 271
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ T ++ G VS + + ++ R G+ + +K +
Sbjct: 272 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV-ILPS---T 529
E+ + G + +KNL + +L F FGS+ +V ++ +
Sbjct: 332 ELKQMFEQLKRERIRGCQGVK--LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 530 KTLALVVFLEPVEAAAA 546
K L+ F P +A A
Sbjct: 390 KGFGLICFSSPEDATKA 406
Score = 116 (45.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L+++NL T +++LR FS FG++S V ++ ++ +SKG + ++ PE A++A+
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTE 409
Query: 360 LDNSIFQGRLLHVMPA-RH 377
++ I + L + A RH
Sbjct: 410 MNGRILGSKPLSIALAQRH 428
Score = 115 (45.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ F ++ G+ LSVKV +GK S GF
Sbjct: 237 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY---GKTLSVKVMTD-SSGK--SKGF 290
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
GF+ FDS E A ++ G ++G + + K + Q K
Sbjct: 291 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
Score = 112 (44.5 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N +++ + E ++++N ++ L++ FSK+G V ++ D K SKG
Sbjct: 232 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGK-SKGF 290
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+V + E+A +A+E ++ G+L+ V A+ KK + EL Q
Sbjct: 291 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ-KKVERQAELKQMFEQ 339
Score = 110 (43.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 56/236 (23%), Positives = 93/236 (39%)
Query: 287 SSKDVQQEVLESGR---LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
S KD + V R L+V +L TED L FS G V + I D+ T+RS G A
Sbjct: 53 SGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYA 112
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXX 403
YV + A +A++ ++ I +G+ + +M ++ + + N K L +
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVF---IKNLDKSIDN 169
Query: 404 XXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIA 463
S K +S M D + A H ++S DR ++ ++ G +
Sbjct: 170 KTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQS-AADRAIEEMNGKLLKGCKVFVG 228
Query: 464 ETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
K S EF+ +V+ +KN D + L +F K+G
Sbjct: 229 RFKNRKDREAELRSKASEFT-----------NVY-IKNFGGDMDDERLKDVFSKYG 272
Score = 106 (42.4 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + ++RL+D FS+ G+ K+M GKS+ F F+ F + + A++A++
Sbjct: 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 307
Query: 61 FN 62
N
Sbjct: 308 MN 309
Score = 103 (41.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L + FS G+I +K+M G S+ +AF+ F+ + A+ AI+ N
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 63 KSYLDTCRI 71
L C++
Sbjct: 217 GKLLKGCKV 225
Score = 96 (38.9 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
L++KNL+ DE LR F G I VKV + + G+ S GFG I F S E AT
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSF---GSISRVKVMQ--EEGQ--SKGFGLICFSSPEDATK 405
Query: 678 VCRDLQGTILDGHALILQL 696
++ G IL L + L
Sbjct: 406 AMTEMNGRILGSKPLSIAL 424
Score = 56 (24.8 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTED L FS G + ++ R + +S +A++ F +A++A+ N
Sbjct: 72 VGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMN 130
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 127 (49.8 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKNL V E RL+D FSQ G++ K+MR G SR F F+ F +EA++A+
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 118 (46.6 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F + G I S KV + G + S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFSPY---GVITSAKV---MTEGGH-SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
E AT ++ G I+ L + L K++ + +
Sbjct: 343 PEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAI 377
Score = 113 (44.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 27/98 (27%), Positives = 54/98 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL + +++LR+ FS +G ++ ++ + SKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ I + L+V A+ K+ K L N Q T++
Sbjct: 354 NGRIVGTKPLYVALAQRKEER-KAILTNQYMQRLSTMR 390
Score = 110 (43.8 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+E ++V+NL E L++ FS+FG + V ++ D D+ S+G +V + E A +
Sbjct: 188 MEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQK 246
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
A+ ++ GRLL+V A+ K+ + EL Q
Sbjct: 247 AVVNMNGREVSGRLLYVGRAQ-KRVERQNELKRRFEQ 282
Score = 110 (43.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 68/284 (23%), Positives = 110/284 (38%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D+ S+G +V + E+A AI
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAIS 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELH------NSTSQGTKTLKQXXXXXXKASEASG 412
++ + R + V H KS ++E+ T+ K L S
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQ 213
Query: 413 NTKAWNSLFMRPDTVVEN-----IARKHGVSKSDLLDREANDLAVRIA-LGETQVIAETK 466
K + MR D+ KH ++ +++ +++ R+ +G Q E +
Sbjct: 214 FGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Query: 467 KALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--K 523
L F K D L R V L VKNL + +L K F +G + K
Sbjct: 274 NELKR---------RFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAK 324
Query: 524 VILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
V+ +K V F P EA A + + PLY+ A
Sbjct: 325 VMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 107 (42.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 65/285 (22%), Positives = 112/285 (39%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ + +G+ + +M ++ K + N K E S + KA
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGN--------------IFIKNLEDSIDNKALYDT 118
Query: 421 FMRPDTVV--ENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSS 478
F ++ + + +HG + E ++ A ++ +K G S
Sbjct: 119 FSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFV--GHFKSR 176
Query: 479 LE-EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPST---KTL 532
E E G ++ +N VKNL D E L +F +FG + KV+ + +
Sbjct: 177 REREVELGAR-AMEFTN--IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGF 233
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSK 577
V F + EA A + + G LY+ A V Q+ +
Sbjct: 234 GFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKR 278
Score = 100 (40.3 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 38/150 (25%), Positives = 68/150 (45%)
Query: 574 STSKGNQKND--AVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN 631
ST G ND VG ++R E+++E + +E +++VKNL+ ++
Sbjct: 156 STMNGMLLNDRKVFVGHFKSRR---EREVE------LGARAMEFTNIYVKNLHVDVDEQR 206
Query: 632 LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691
L+ F + G++LSVKV +++ S GFGF+ F+ E A ++ G + G
Sbjct: 207 LQDLFSQF---GKMLSVKV---MRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRL 260
Query: 692 LILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
L + + + Q K ++ L R
Sbjct: 261 LYVGRAQKRVERQNELKRRFEQMKQDRLTR 290
Score = 89 (36.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G I K++ + G SR F F+ F T + A+ AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 62 (26.9 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 130 (50.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 74/313 (23%), Positives = 131/313 (41%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D ++RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNT-KAWNS 419
+ + +GR + +M ++ K + N K L ++A +T A+ +
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVF---IKNLDDSID-----NKALYDTFSAFGN 124
Query: 420 LFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSL 479
+ EN +R HG + +EA A++ G ++ +K +
Sbjct: 125 ILSCKVVCDENGSRGHGFVHFET--QEAATRAIQTMNG---MLLNDRKVFVGHFKSRKER 179
Query: 480 E-EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLD-KVILPST---KTLA 533
E EF A ++ +N V+ +KN D + L ++F +FG +L KV++ T K
Sbjct: 180 EAEFGAR---AMEFTN-VY-IKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFG 234
Query: 534 LVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTS-KGNQKNDAVVGEHDAK 592
V F + EA A + K G +Y+ A + QS K Q V +
Sbjct: 235 FVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGV 294
Query: 593 RALLEQQLEGVTD 605
++ +G+ D
Sbjct: 295 NLYVKNLDDGIDD 307
Score = 120 (47.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 67/284 (23%), Positives = 116/284 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ R G +V + E+A+RAI+
Sbjct: 99 GNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHG--FVHFETQEAATRAIQ 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V H KS ++E G + ++ + + +
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRKERE----AEFGARAMEFTNVYIKNFGDDMDDNRL-R 208
Query: 419 SLFMR-PDTVVENIARKH-GVSKS-DLLDREANDLAVRIAL--------GETQVIAETKK 467
+F R T+ + H G SK ++ E ++ A + G + +K
Sbjct: 209 EIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 468 ALTNAGVNVSSLE-EFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--K 523
L S L+ +F K + + R V L VKNL + L K F +G++ K
Sbjct: 269 RLERQ----SELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAK 324
Query: 524 VILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
V+ +K V F P EA A + + PLY+ A
Sbjct: 325 VMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 119 (46.9 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F + G I S KV + G + S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPY---GTITSAKV---MTEGGH-SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
E AT ++ G I+ L + L K++ + +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 114 (45.2 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+E ++++N ++ LRE FS+FG V +++D T RSKG +V + E A +
Sbjct: 188 MEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQK 246
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
A+ ++ GR+++V A+ K+ + EL Q
Sbjct: 247 AVADMNGKEINGRMVYVGRAQ-KRLERQSELKRKFEQ 282
Score = 113 (44.8 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS +G ++ ++ + SKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ I + L+V A+ K+ K L N Q T++
Sbjct: 354 NGRIVSTKPLYVALAQRKEER-KAILTNQYMQRLATMR 390
Score = 104 (41.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + ++RLR+ FS+ G+ K+M G+S+ F F+ F +EA++A+
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 96 (38.9 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 30/111 (27%), Positives = 52/111 (46%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A+ +E ++++KN D LR+ F G+ LSVKV G+ S GF
Sbjct: 180 EAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRF---GKTLSVKVMMD-HTGR--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ--VVKKAEKDK 713
GF+ F+ E A D+ G ++G + + + + Q + +K E+ K
Sbjct: 234 GFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMK 284
Score = 83 (34.3 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L D FS G I K++ ++G SR F+ F T++ A AI+ N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 63 (27.2 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMN 73
>SGD|S000005964 [details] [associations]
symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
GermOnline:YPL043W Uniprot:P37838
Length = 685
Score = 160 (61.4 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 44/140 (31%), Positives = 70/140 (50%)
Query: 271 EEDANGEI---VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSE 327
EED N E VD + + SK Q E +FVRN+PY ATE+ L HFSKFG+V
Sbjct: 259 EEDENEEEDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKY 318
Query: 328 VHIVVDKDTKRSKGIAYVLYA-----------IPESASRAI----EVLDNSIFQGRLLHV 372
V+DK T +KG A+V + P + S ++ +V+ +++GR+L +
Sbjct: 319 ALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNAPAAGSTSLLIGDDVMPEYVYEGRVLSI 378
Query: 373 MPARHKKSSDKQELHNSTSQ 392
P ++ + + N+ +
Sbjct: 379 TPTLVREDAGRMAEKNAAKR 398
Score = 148 (57.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDT-KRSKGI 342
PSS+ + L+ LFVR++P T+++L + FS F + H VV KDT KRS+G
Sbjct: 11 PSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIK--HAVVVKDTNKRSRGF 68
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK--QELHNSTSQGTKTL 397
+V +A+ + A+ + F G +L V A+ + S K + + ST + ++ +
Sbjct: 69 GFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKI 125
Score = 108 (43.1 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
V+++P+ VT+++L DFFS I A +++ + +SR F F+ F E + +EA+ K+
Sbjct: 30 VRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKT 89
Query: 65 YLDTCRISCEIARK 78
+ + +IA++
Sbjct: 90 KFNGHILRVDIAKR 103
Score = 84 (34.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP 527
V+ +S + S K KR + V+N+PYD++E LA F KFGS+ K LP
Sbjct: 270 VDQASKNKESKRKAQN-KREDFSVFVRNVPYDATEESLAPHFSKFGSV-KYALP 321
Score = 77 (32.2 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 24/126 (19%), Positives = 58/126 (46%)
Query: 2 RICVKNLPKYVTED-RLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
++ ++N+P + +L+ F + G + +A + R +DGK FAF+ + A++
Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALEN 207
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
+D +++ + A + W Y K + E+++ + N + E+ ++
Sbjct: 208 TKDLKIDGRKVAVDFAVQ------KNRWEDYK-KAQPEMNDKDDNES-GNEDAEENHDDE 259
Query: 121 VTENDD 126
EN++
Sbjct: 260 EDENEE 265
Score = 75 (31.5 bits), Expect = 6.9e-10, Sum P(4) = 6.9e-10
Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 273 DANGEIVDPGNPSSSSKDVQQEVLESG-RLFVRNLPYTATED-ELREHFSKFGNVSEVHI 330
+++ +I N D + +L+ +L +RN+P++ + +L++ F ++G V E I
Sbjct: 120 ESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATI 179
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
+D K G A+V + A+E + GR + V
Sbjct: 180 PRKRDGKLC-GFAFVTMKKISNCRIALENTKDLKIDGRKVAV 220
Score = 55 (24.4 bits), Expect = 4.8e-07, Sum P(4) = 4.8e-07
Identities = 13/68 (19%), Positives = 32/68 (47%)
Query: 571 SQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDE 630
++S + +D E++ + ++Q + ++ E S+FV+N+ + +E
Sbjct: 245 NESGNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEE 304
Query: 631 NLRKHFGE 638
+L HF +
Sbjct: 305 SLAPHFSK 312
Score = 52 (23.4 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 695 QLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEA 727
Q+ A K+++ +KA+ + + VRNV ++A
Sbjct: 269 QVDQASKNKESKRKAQNKREDFSVFVRNVPYDA 301
Score = 45 (20.9 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 641 KEGRILSVKVKKHLKNGK-NVSMGFGFIEF 669
K G + KV +K S G+GF+EF
Sbjct: 531 KSGVVKQAKVIMEVKGSTAGRSRGYGFVEF 560
Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 638 EHIKEGRILSV 648
E++ EGR+LS+
Sbjct: 368 EYVYEGRVLSI 378
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 145 (56.1 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 71/276 (25%), Positives = 113/276 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L E FS FG + + VD + +SKG +V Y E+A AI+
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLKQXXXXXXKASEASGNTKAW 417
L+ + + ++V P HK D E T+ K L + + ++ G
Sbjct: 192 KLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDE-ELNKVFGEFGVT 250
Query: 418 NSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAE--TKKALTNAGVN 475
S + D E ++ G + D A AV G+T E KA +
Sbjct: 251 TSCVIMRDG--EGKSKGFGFVNFENSDDAAR--AVDALNGKTFDDKEWFVGKAQKKSERE 306
Query: 476 VSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVIL-PS--T 529
++F + +S L VKNL ++ +L + F FG++ KV+ PS +
Sbjct: 307 TELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVS 366
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+ V F P EA A + K PLY+ A
Sbjct: 367 RGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 137 (53.3 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ L+V+NL + T+D+LREHF+ FG ++ ++ D S+G +V ++ PE A+RA
Sbjct: 325 QGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGV-SRGSGFVAFSTPEEATRA 383
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
I ++ + + L+V A+ K+ K L SQ
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKEDR-KARLQAQFSQ 418
Score = 135 (52.6 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L T T+ +L E F++ G V V + D T+RS G YV YA P+ ASRA+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ GR + VM + S K + N
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGN 134
Score = 134 (52.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + VKNL + VT+D+LR+ F+ G IT K+MR G SR F+ F T +EA AI
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 61 FNKSYLDTCRISCEIARKVGD 81
N + T + +A++ D
Sbjct: 387 MNGKMIVTKPLYVALAQRKED 407
Score = 125 (49.1 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D+ + +L+VKNL+ D+ LR+HF G I S KV +++ VS G GF+ F
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPF---GTITSCKV---MRDPSGVSRGSGFVAFS 375
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAE 710
+ E AT ++ G ++ L + L K+D + +A+
Sbjct: 376 TPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQ 415
Score = 115 (45.5 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
+D E ++ ++V+NL + +++EL + F +FG + I+ D + K SKG +V +
Sbjct: 214 RDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFE 272
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTK 395
+ A+RA++ L+ F + V A+ KKS + EL Q K
Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQ-KKSERETELKQKFEQSLK 318
Score = 109 (43.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 609 DP--DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666
DP ++V+ +++VKNL+ DE L K FGE G S + +++G+ S GFGF
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF---GVTTSCVI---MRDGEGKSKGFGF 268
Query: 667 IEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTK 717
+ F++ + A L G D + KK E+ + +K + S K
Sbjct: 269 VNFENSDDAARAVDALNGKTFDDKEWFVGKAQ-KKSERETELKQKFEQSLK 318
Score = 102 (41.0 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKNL + ++++ L F + G T +MR +GKS+ F F+ F +A A+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 61 FNKSYLD 67
N D
Sbjct: 284 LNGKTFD 290
Score = 89 (36.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/109 (26%), Positives = 53/109 (48%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L + FS G I K+ G+S+ + F+ + T++ A+ AI N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 63 KSYLDTCRISC-EIARKVG-DPNMPR-PWSRYSLKKEKE-VSEDEKNPV 107
L+ ++ K+ DP+ + ++ +K E +S++E N V
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKV 243
Score = 74 (31.1 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKYFNK 63
V +L VT+ +L + F+Q G++ ++ R + S + ++ + T Q+A A+ N
Sbjct: 49 VGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNF 108
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEK 104
L+ I + V DP++ + K + S D K
Sbjct: 109 MALNGRAI--RVMYSVRDPSLRKSGVGNIFIKNLDKSIDHK 147
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 136 (52.9 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 74/281 (26%), Positives = 116/281 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL T L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG--SKGHGFVHFETEEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V + +K + EL GT+T K+ K + K N
Sbjct: 157 KMNGMLLNDRKVFVGQFKSRKEREA-EL------GTRT-KEFTNVYIKNFGDRMDDKTLN 208
Query: 419 SLFMRPDTV--VENIARKHGVSKS-DLLDREANDLAVRIALGETQVIAETKK------AL 469
LF R V V+ + + G SK + E ++ A + A+ E K A
Sbjct: 209 GLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQK-AVDEMNGKELNGKHIYVGPAQ 267
Query: 470 TNAGVNVSSLEEFSAGKTD-GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL 526
++ +F D G++ VKNL + L K F FG++ KV+
Sbjct: 268 KKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMT 327
Query: 527 PS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Score = 117 (46.2 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
Identities = 39/110 (35%), Positives = 56/110 (50%)
Query: 596 LEQQLEGVT-DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
L+++ E VT D I R + +L+VKNL+ DE L+K F G I S KV
Sbjct: 276 LKRKFEQVTQDRGI---RYQGINLYVKNLDDGIDDERLQKEFSPF---GTITSTKVMT-- 327
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ G+ S GFGF+ F S E AT ++ G I+ L + L K++ Q
Sbjct: 328 EGGR--SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQ 375
Score = 111 (44.1 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ L++ FS FG ++ ++ + RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 104 (41.7 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 30/104 (28%), Positives = 50/104 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + D+ L FG G++LSVKV + GK S GF
Sbjct: 180 EAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRF---GQVLSVKVMTD-EGGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
GF+ F+ E A ++ G L+G + + K D + K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELK 277
Score = 100 (40.3 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N + L F +FG V V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTK 395
++ ++ G+ ++V PA+ KK EL Q T+
Sbjct: 248 VDEMNGKELNGKHIYVGPAQ-KKVDRHIELKRKFEQVTQ 285
Score = 96 (38.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + L F + G++ K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARKVGD 81
N L+ I A+K D
Sbjct: 251 MNGKELNGKHIYVGPAQKKVD 271
Score = 94 (38.1 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ F+ F TE+ AE AI+ N
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 54 (24.1 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A + F +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMN 73
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 113 (44.8 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ ++FVRNLP+ T +L+E FS+ G+V I ++ +SKG V + PESA +A
Sbjct: 413 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENG--KSKGCGTVRFDSPESAEKA 470
Query: 357 IEVLDNSIFQGRLLHV 372
+++ GR + V
Sbjct: 471 CRIMNGIKISGREIDV 486
Score = 108 (43.1 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
DR+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 408 DRIGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 460
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
FDS E+A CR + G + G + ++L
Sbjct: 461 FDSPESAEKACRIMNGIKISGREIDVRL 488
Score = 108 (43.1 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 38/106 (35%), Positives = 52/106 (49%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 175 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 230
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
A A++ + S+F G+ L P H K DK H S +KT
Sbjct: 231 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPHEDYRSHDSKT 273
Score = 95 (38.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 182 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 241
Query: 61 FNKSYL 66
FN +L
Sbjct: 242 FNGQFL 247
Score = 91 (37.1 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 49 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 108
Query: 60 YFNK 63
NK
Sbjct: 109 TMNK 112
Score = 86 (35.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 31/122 (25%), Positives = 59/122 (48%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDV---QQEVLESGRLFVRNLPYT----A 310
D +K+ S + E+ + + + +P S K+ +++ R+F+ N+PY A
Sbjct: 6 DESVKED-KSELKEKSSGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQA 64
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+D +RE K G V+ V + D + K S+G V + E +A+E ++ GR L
Sbjct: 65 IKDLMRE---KVGEVTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPL 120
Query: 371 HV 372
++
Sbjct: 121 NI 122
Score = 49 (22.3 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ N +F V+NLP+D + +L + F + G
Sbjct: 413 KGNQIF-VRNLPFDLTWQKLKEKFSQCG 439
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 166 (63.5 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 32/102 (31%), Positives = 67/102 (65%)
Query: 278 IVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK 337
+++ + SSS+ +V +E + RL +N+P+T+T +++R F K+G+V ++ + + K +
Sbjct: 73 VLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKK-E 131
Query: 338 RSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379
R++G+ ++ A PE A+ A++ L++ ++GR L V A+ KK
Sbjct: 132 RNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKK 173
Score = 88 (36.0 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 301 LFVRNLPYTATEDELREHF-SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
LFV NL + A L+E F + GNV ++ ++ +RS G +V + + A A+
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 360 LDNSIFQGRLLHVMPAR 376
F GR + + ++
Sbjct: 251 FQGKDFLGRPIRLAKSK 267
Score = 84 (34.6 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 30/103 (29%), Positives = 50/103 (48%)
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
P V + +LFV NL F+ ++L++ F G ++S +V H +N + S G+GF+ F
Sbjct: 183 PSPVPTFNLFVANLAFEARAKHLKEFFDADT--GNVVSTEVIFH-ENPRR-SSGYGFVSF 238
Query: 670 DSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKD 712
+ + A + QG G + L K +Q VK K+
Sbjct: 239 KTKKQAEAALIEFQGKDFLGRPIRLA-----KSKQFVKLQAKE 276
Score = 82 (33.9 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 18/77 (23%), Positives = 37/77 (48%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ +N+P T + +R F + G + D ++ K ++R FI + +EA A+K
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153
Query: 61 FNKSYLDTCRISCEIAR 77
+ R+ + A+
Sbjct: 154 LESCEYEGRRLKVDYAK 170
Score = 79 (32.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 470 TNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST 529
T V SS SA + + S + +N+P+ S+ ++ +F K+GS+ + +
Sbjct: 69 TQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMH 128
Query: 530 KTLAL--VVFLE---PVEAAAAFKGLAYKRYKGVPLYLEWA 565
K +VF+E P EAA A K L Y+G L +++A
Sbjct: 129 KKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYA 169
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 120 (47.3 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSYAR 97
Score = 117 (46.2 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 34/99 (34%), Positives = 43/99 (43%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L V LP T+DELR FS G V ++ DK S G +V Y + A RAI L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+ Q + + V AR K L+ S T T K
Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 112 (44.5 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T T+ ++ + FS+FG + ++VD+ T S+G+A++ + A
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 60 YFN 62
FN
Sbjct: 166 SFN 168
Score = 89 (36.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 84 (34.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 52/225 (23%), Positives = 95/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 95 YARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 64 (27.6 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 120 (47.3 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 88 TLNGLRLQSKTIKVSYAR 105
Score = 119 (46.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/118 (30%), Positives = 51/118 (43%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G ++D + ++ + L V LP T+DELR FS G V ++ DK S G
Sbjct: 12 GYEDHMAEDCRDDIGRTN-LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 70
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+V Y + A RAI L+ Q + + V AR K L+ S T T K
Sbjct: 71 YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 128
Score = 112 (44.5 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T T+ ++ + FS+FG + ++VD+ T S+G+A++ + A
Sbjct: 109 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 168
Query: 354 SRAI 357
AI
Sbjct: 169 EEAI 172
Score = 100 (40.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 60 YFN 62
FN
Sbjct: 174 SFN 176
Score = 89 (36.4 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 314 NGYRLGDKILQV 325
Score = 84 (34.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 52/225 (23%), Positives = 95/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 103 YARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 160
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 161 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGP 218
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 219 V--HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 275
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 276 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 315
Score = 64 (27.6 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 231 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 281
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 120 (47.3 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 107 TLNGLRLQSKTIKVSYAR 124
Score = 117 (46.2 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 34/99 (34%), Positives = 43/99 (43%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L V LP T+DELR FS G V ++ DK S G +V Y + A RAI L
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+ Q + + V AR K L+ S T T K
Sbjct: 109 NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 147
Score = 112 (44.5 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T T+ ++ + FS+FG + ++VD+ T S+G+A++ + A
Sbjct: 128 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 187
Query: 354 SRAI 357
AI
Sbjct: 188 EEAI 191
Score = 100 (40.3 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192
Query: 60 YFN 62
FN
Sbjct: 193 SFN 195
Score = 89 (36.4 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 333 NGYRLGDKILQV 344
Score = 84 (34.6 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 52/225 (23%), Positives = 95/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 122 YARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 179
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 180 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGP 237
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 238 V--HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 294
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 295 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 334
Score = 64 (27.6 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 250 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 300
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 139 (54.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+N+ +D LR+HFS FG ++ ++VD++ RSKG +V + PE A+ A+ +
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENG-RSKGFGFVCFEKPEEATAAVTDM 403
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
++ + + L+V A+ K+ + +L + Q TL+
Sbjct: 404 NSKMIGAKPLYVALAQRKEDR-RAQLASQYMQRLATLR 440
Score = 138 (53.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 69/304 (22%), Positives = 119/304 (39%)
Query: 275 NGEIVDPGNPSS---SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIV 331
N E++ G P S +D +G +F++NL + + FS FGN+ +
Sbjct: 119 NFEVIH-GRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 177
Query: 332 VDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTS 391
D D SKG +V + SA AIE ++ + + ++V + + K EL S
Sbjct: 178 TD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK-ELGESGL 235
Query: 392 QGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLA 451
+ T + + S + + + + + G D++A A
Sbjct: 236 KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAV-VMTDAQGKPKGFGFVAFADQDAAGQA 294
Query: 452 VR----IALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDS 506
V L T +A + + ++ A K + ++R V L VKN+ D
Sbjct: 295 VEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDL 354
Query: 507 SEGELAKMFGKFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561
++ L F FG++ KV++ +K V F +P EA AA + K PLY
Sbjct: 355 NDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY 414
Query: 562 LEWA 565
+ A
Sbjct: 415 VALA 418
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/99 (29%), Positives = 54/99 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN +++ +++L FS+ GEIT A +M GK + F F+ F + A +A++
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEK 97
N S L+ C++S A+K + + +LK+E+
Sbjct: 298 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQER 336
Score = 117 (46.2 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 34/113 (30%), Positives = 55/113 (48%)
Query: 592 KRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVK 651
+ A L+++ E + + R + +L+VKN+ D+ LR HF G I S KV
Sbjct: 321 RSAELKRKYEALKQERVQ--RYQGVNLYVKNIEEDLNDDGLRDHFSSF---GTITSAKVM 375
Query: 652 KHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+NG+ S GFGF+ F+ E AT D+ ++ L + L K+D +
Sbjct: 376 VD-ENGR--SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRR 425
Score = 99 (39.9 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + + + D FS G I K+ +G S+ + F+ F TE A+ AI+ N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 63 -------KSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGE 114
K Y+ + + +++G+ + ++ +K E + EK + +K GE
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLK--YTNVFVKNFGEHLDQEKLSAMFSKFGE 263
Score = 57 (25.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 12 VTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKYFN 62
V+E L + FS G + ++ R + S +A++ F+ +AE A+ N
Sbjct: 68 VSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 133 (51.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKNLP V E L+D FSQ G++ K+MR G SR F F+ F +EA++A+ +
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 117 (46.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 28/98 (28%), Positives = 54/98 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL + +D+LR+ FS +G ++ ++ + SKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
+ I + L+V A+ K+ K L N Q T++
Sbjct: 354 NGRIVGTKPLYVALAQRKEER-KAILTNQYMQRLSTMR 390
Score = 115 (45.5 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ D+ LRK F + G I S KV + G + S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPY---GVITSAKV---MTEGGH-SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
E AT ++ G I+ L + L K++ + +
Sbjct: 343 PEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAI 377
Score = 114 (45.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 67/284 (23%), Positives = 113/284 (39%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ + +G+ + +M ++ K + N K E S + KA
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGN--------------IFIKNLEDSIDNKALYDT 118
Query: 421 FMRPDTVVE-NIA-RKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSS 478
F ++ +A +HG + E ++ A + ++ +K G S
Sbjct: 119 FSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV--GHFKSR 176
Query: 479 LEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPST---KTLA 533
E + L+ +N VKNLP D E L +F +FG + KV+ ++ +
Sbjct: 177 REREAELGARALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFG 234
Query: 534 LVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSK 577
V F + EA A + K G LY A V Q+ +
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKR 278
Score = 102 (41.0 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
LE ++V+NLP E L++ FS+FG + V ++ D ++ S+ +V + E A +
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQK 246
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
A+ ++ GRLL+ A+ K+ + EL Q
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQ-KRVERQNELKRRFEQ 282
Score = 92 (37.4 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ + D+ S+G +V + E+A +AI
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAIN 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQE 385
++ + R + V H KS ++E
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRRERE 180
Score = 89 (36.4 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G I K+ + G SR F F+ F T + A++AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 86 (35.3 bits), Expect = 9.5e-07, Sum P(3) = 9.5e-07
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ +E +++VKNL ++ L+ F + G++LSVKV +++ S F
Sbjct: 180 EAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF---GKMLSVKV---MRDNSGHSRCF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHAL 692
GF+ F+ E A + G + G L
Sbjct: 234 GFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 66 (28.3 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 482 FSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS--TKTLALVV 536
F K D L+R V L VKNL + +L K F +G + KV+ +K V
Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVC 339
Query: 537 FLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
F P EA A + + PLY+ A
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 62 (26.9 bits), Expect = 8.2e-11, Sum P(3) = 8.2e-11
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 120 (47.3 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSYAR 97
Score = 118 (46.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G ++D + ++ + L V LP T+DELR FS G V ++ DK S G
Sbjct: 4 GYEDHMAEDCRDDIGRTN-LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 62
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
+V Y + A RAI L+ Q + + V AR
Sbjct: 63 YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
Score = 109 (43.4 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP + T+ ++ + FS+FG + ++VD+ T S+G+A++ + +
Sbjct: 101 EVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF---DKR 157
Query: 354 SRAIEVLDNSIFQG 367
S A E + N F G
Sbjct: 158 SEAEEAITN--FNG 169
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 60 YFN 62
FN
Sbjct: 166 NFN 168
Score = 89 (36.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 83 (34.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 95 YARPSSEVIKDAN--LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAITNFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQLCHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 64 (27.6 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>WB|WBGene00011043 [details] [associations]
symbol:rbm-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0040026 EMBL:Z83119 HSSP:P52298
eggNOG:NOG323727 GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL
PIR:T23934 RefSeq:NP_497077.2 ProteinModelPortal:O62325 SMR:O62325
STRING:O62325 PaxDb:O62325 EnsemblMetazoa:R05H10.2.1
EnsemblMetazoa:R05H10.2.2 GeneID:175145 KEGG:cel:CELE_R05H10.2
UCSC:R05H10.2 CTD:175145 WormBase:R05H10.2 HOGENOM:HOG000021963
InParanoid:O62325 NextBio:886958 Uniprot:O62325
Length = 608
Score = 149 (57.5 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 271 EEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHI 330
+ED P NP + K + + E +F+RNL Y E+ ++E SKFG + I
Sbjct: 236 DEDDEEPAKKPKNPKAQLK-TDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAII 294
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIE-VLDNSIFQGRLLHV---MPARHKKSSDKQEL 386
KD+ SKG A+V ++ P AS IE V D I RL+ +P + +K++L
Sbjct: 295 CKYKDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKANLAIPRKEAADMEKEKL 354
Score = 91 (37.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD-KDTKRSK 340
G S+ K +Q L+ RL +RNLP+ +++L+ S G E+ + KD K
Sbjct: 78 GEKSAIRKRFEQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCA 137
Query: 341 GIAYVLYAIPESASRAIEVLDNSIFQGR 368
G ++ + A + E + + GR
Sbjct: 138 GFGFIQFVEKADAEKGREFFNTNKVLGR 165
Score = 87 (35.7 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 31/127 (24%), Positives = 63/127 (49%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRT-KDGKS-RQFAFIGFRTEQEAEEAIK 59
R+ ++NLP ++ L++ S G+ + L + KD K+ F FI F + +AE+ +
Sbjct: 96 RLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGRE 155
Query: 60 YFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIE 119
+FN + + ++ + A + LKK +V +DEK P +K+ +++ E
Sbjct: 156 FFNTNKVLGRSVAADWALDKDTYETNAHEEKQHLKKVVKVEKDEK-PEEKSKKFDEEEGE 214
Query: 120 KVTENDD 126
+ +E +
Sbjct: 215 EESEGSE 221
Score = 83 (34.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 28/116 (24%), Positives = 56/116 (48%)
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
D E + +F++NL++ T +E +++ K G+I + K+ +G S G F+
Sbjct: 256 DESITEGKVVFLRNLSYDTKEELIKEELS---KFGKIDLAIICKYKDSGH--SKGTAFVH 310
Query: 669 FDSVETATNVCRDLQ-GTILDGHALILQLCHAKKD-----EQVVKKAEKDKSSTKL 718
F + A+N ++ G I+D + L +K+ ++ + K KDK + +L
Sbjct: 311 FSTPIEASNCIEGVEDGVIIDNRLVKANLAIPRKEAADMEKEKLTKVPKDKRNLRL 366
Score = 80 (33.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 486 KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLE 539
KTD V ++NL YD+ E + + KFG +D I+ +K A V F
Sbjct: 254 KTDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFST 313
Query: 540 PVEAAAAFKGL 550
P+EA+ +G+
Sbjct: 314 PIEASNCIEGV 324
Score = 67 (28.6 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 573 SSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENL 632
++ + G K+DA E A+ + ++LE T+ I P R L + NL K D L
Sbjct: 376 TAAAAGMSKDDAAKRERIAEA--MRKKLEN-TNMFISPVR-----LCIHNLPQKINDVKL 427
Query: 633 RKHFGEHIKEGRILS-VKV---KKHLK-NGKNVSMGFGFIEF 669
++ + G +++ +V KK L +GK S GFGF+ F
Sbjct: 428 KELAQKFTSPGALITECRVWMDKKRLTPDGKPKSSGFGFVAF 469
Score = 37 (18.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 429 ENIARKHGVSKSDLLDREANDLAVRIALGETQV-IAETKKALTNAGVNVSSLE 480
+ A G+SK D RE A+R L T + I+ + + N ++ ++
Sbjct: 374 DGTAAAAGMSKDDAAKRERIAEAMRKKLENTNMFISPVRLCIHNLPQKINDVK 426
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 113 (44.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ ++FVRNLP+ T +L+E FS+ G+V I ++ +SKG V + PESA +A
Sbjct: 454 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENG--KSKGCGTVRFDSPESAEKA 511
Query: 357 IEVLDNSIFQGRLLHV 372
+++ GR + V
Sbjct: 512 CRIMNGIKISGREIDV 527
Score = 108 (43.1 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 38/106 (35%), Positives = 52/106 (49%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 173 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 228
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
A A++ + S+F G+ L P H K DK H S +KT
Sbjct: 229 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPHEDYRSHDSKT 271
Score = 104 (41.7 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
+R+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 449 ERIGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 501
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
FDS E+A CR + G + G + ++L
Sbjct: 502 FDSPESAEKACRIMNGIKISGREIDVRL 529
Score = 95 (38.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239
Query: 61 FNKSYL 66
FN +L
Sbjct: 240 FNGQFL 245
Score = 91 (37.1 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 47 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 106
Query: 60 YFNK 63
NK
Sbjct: 107 TMNK 110
Score = 84 (34.6 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 269 VGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYT----ATEDELREHFSKFGN 324
+G + AN P + +S +++ R+F+ N+PY A +D +RE K G
Sbjct: 19 MGNKKANR--FHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMRE---KVGE 73
Query: 325 VSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
V+ V + D + K S+G V + E +A+E ++ GR L++
Sbjct: 74 VTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 120
Score = 49 (22.3 bits), Expect = 6.9e-08, Sum P(3) = 6.9e-08
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ N +F V+NLP+D + +L + F + G
Sbjct: 454 KGNQIF-VRNLPFDLTWQKLKEKFSQCG 480
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 138 (53.6 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 70/279 (25%), Positives = 116/279 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAI+
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAID 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXX--KASEASGNT 414
++ + R + V R K +++ EL + T +K + E G
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQY 214
Query: 415 KAWNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTN 471
A S+ + D +R G VS + + + +D+ + G+ + +K +
Sbjct: 215 GAALSVKVMTDD--HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272
Query: 472 AGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS 528
+F K D + R V L VKNL + L K F FGS+ KV++
Sbjct: 273 ---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG 329
Query: 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 121 (47.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L++ FG++ G LSVKV +GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQY---GAALSVKVMTD-DHGK--SRGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A D+ G L+G A+ + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 117 (46.2 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFTPF---GSITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 113 (44.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 23/79 (29%), Positives = 48/79 (60%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ F+ FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 107 (42.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+++F Q G K+M GKSR F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 95 (38.5 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 93 (37.8 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E F ++G V ++ D D +S+G +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ + V A+ KK + EL Q
Sbjct: 248 VDDMNGKDLNGKAIFVGRAQ-KKVERQTELKRKFEQ 282
Score = 87 (35.7 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIDKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 113 (44.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ ++FVRNLP+ T +L+E FS+ G+V I ++ +SKG V + PESA +A
Sbjct: 464 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENG--KSKGCGTVRFDSPESAEKA 521
Query: 357 IEVLDNSIFQGRLLHV 372
+++ GR + V
Sbjct: 522 CRIMNGIKISGREIDV 537
Score = 108 (43.1 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
DR+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 459 DRIGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 511
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
FDS E+A CR + G + G + ++L
Sbjct: 512 FDSPESAEKACRIMNGIKISGREIDVRL 539
Score = 104 (41.7 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 35/96 (36%), Positives = 48/96 (50%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 226 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 281
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELH 387
A A++ + S+F G+ L P H K DK H
Sbjct: 282 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPH 314
Score = 95 (38.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 61 FNKSYL 66
FN +L
Sbjct: 293 FNGQFL 298
Score = 91 (37.1 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159
Query: 60 YFNK 63
NK
Sbjct: 160 TMNK 163
Score = 85 (35.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDV---QQEVLESGRLFVRNLPYT----A 310
D +K+ S + E+ + + +P S K+ +++ R+F+ N+PY A
Sbjct: 57 DESVKEE-KSELKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQA 115
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+D +RE K G V+ V + D + K S+G V + E +A+E ++ GR L
Sbjct: 116 IKDLMRE---KVGEVTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPL 171
Query: 371 HV 372
++
Sbjct: 172 NI 173
Score = 51 (23.0 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 484 AGKTDGL-KRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+G D + + N +F V+NLP+D + +L + F + G
Sbjct: 455 SGMRDRIGSKGNQIF-VRNLPFDLTWQKLKEKFSQCG 490
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 116 (45.9 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSYAR 97
Score = 115 (45.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G ++D + ++ + L V LP T++ELR FS G V ++ DK S G
Sbjct: 4 GYEDHMAEDCRDDIGRTN-LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLG 62
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+V Y + A RAI L+ Q + + V AR K L+ S T T K
Sbjct: 63 YGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 112 (44.5 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T T+ ++ + FS+FG + ++VD+ T S+G+A++ + A
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 60 YFN 62
FN
Sbjct: 166 SFN 168
Score = 89 (36.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 86 (35.3 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 52/225 (23%), Positives = 95/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 95 YARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 64 (27.6 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 116 (45.9 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSYAR 97
Score = 115 (45.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G ++D + ++ + L V LP T++ELR FS G V ++ DK S G
Sbjct: 4 GYEDHMAEDCRDDIGRTN-LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLG 62
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+V Y + A RAI L+ Q + + V AR K L+ S T T K
Sbjct: 63 YGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 112 (44.5 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T T+ ++ + FS+FG + ++VD+ T S+G+A++ + A
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 60 YFN 62
FN
Sbjct: 166 SFN 168
Score = 89 (36.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 86 (35.3 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 52/225 (23%), Positives = 95/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 95 YARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 64 (27.6 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 120 (47.3 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + T ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSYAR 97
Score = 118 (46.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G ++D + ++ + L V LP T+DELR FS G V ++ DK S G
Sbjct: 4 GYEDHMAEDCRDDIGRTN-LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 62
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
+V Y + A RAI L+ Q + + V AR
Sbjct: 63 YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
Score = 107 (42.7 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T+ ++ + FS+FG + ++VD+ T S+G+A++ + A
Sbjct: 101 EVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS+ G I +++ L+ G SR AFI F EAEEAI
Sbjct: 106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 60 YFN 62
FN
Sbjct: 166 SFN 168
Score = 89 (36.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 86 (35.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 52/225 (23%), Positives = 96/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP + ++ ++ MF +FG + +V++ T L+ V F+
Sbjct: 95 YARPSSEVIKDAN--LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 64 (27.6 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 136 (52.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 66/282 (23%), Positives = 115/282 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++N+ + L + FS FGN+ +V D++ SKG +V + E+A+RAIE
Sbjct: 99 GNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V H KS ++E G K ++ E + K N
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRKERE----AEMGAKAVEFTNVYIKNFGEDIDSEKLKN 209
Query: 419 SL--FMRPDTV---VENIARKHGVSKSDLLD-----REANDLAVRIALGETQVIAETKKA 468
F + +V + R G + ++ R ++ + G + +K
Sbjct: 210 IFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKR 269
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVI 525
L G E+ K + ++R V L VKNL + +L K F +G++ KV+
Sbjct: 270 LERQGELKRKFEQI---KQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM 326
Query: 526 LPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ V F P EA A + + PLY+ A
Sbjct: 327 TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 124 (48.7 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 596 LEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLK 655
L+++ E + I R + +L+VKNL+ DE LRK F + G I S KV +
Sbjct: 276 LKRKFEQIKQERIQ--RYQGVNLYVKNLDDSIDDEKLRKEFAPY---GTITSAKV---MT 327
Query: 656 NGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
+G + S GFGF+ F S E AT ++ G I+ L + L K++ + +
Sbjct: 328 DGGH-SRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 112 (44.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 28/113 (24%), Positives = 62/113 (54%)
Query: 289 KDVQQEVLE--SG-RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
+ ++QE ++ G L+V+NL + +++LR+ F+ +G ++ ++ D S+G +V
Sbjct: 281 EQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGG--HSRGFGFV 338
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLK 398
++ PE A++A+ ++ I + L+V A+ K+ K L N Q +++
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER-KAILTNQYIQRLASIR 390
Score = 103 (41.3 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L + FS G + + + D T+RS G AY+ + P A A++ +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 361 DNSIFQGRLLHVM 373
+ + +GR + +M
Sbjct: 73 NYEVIKGRPIRIM 85
Score = 93 (37.8 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
+ +E ++++N ++L+ F++FG V ++ D + RS+G +V + A
Sbjct: 186 KAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDA 244
Query: 354 SRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
RA+ ++ GR+L+V R +K ++Q EL Q
Sbjct: 245 RRAVTEMNGKELNGRVLYV--GRAQKRLERQGELKRKFEQ 282
Score = 86 (35.3 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KN+ + + L D FS G I K++ ++G S+ + F+ F T++ A AI+ N
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 84 (34.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++L++ F++ G+ +M + G+SR F F+ F +A A+
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 61 FNKSYLD 67
N L+
Sbjct: 251 MNGKELN 257
Score = 84 (34.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 27/106 (25%), Positives = 51/106 (48%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KN++ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAN 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A K T + ++N
Sbjct: 153 RAIETMNGMLLNDRKVFVGHFKSRKEREAEMGA-KAVEFTNVYIKN 197
Score = 84 (34.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 30/111 (27%), Positives = 52/111 (46%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ VE ++++KN E L+ F E G+ LSV V + G+ S GF
Sbjct: 180 EAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEF---GKTLSVCVMTD-ERGR--SRGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ--VVKKAEKDK 713
GF+ F + A ++ G L+G L + + + Q + +K E+ K
Sbjct: 234 GFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIK 284
Score = 59 (25.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDK------VILPSTKTLALVVFLEPVEAAAAFKGLAY 552
V +L D +E L + F G + VI + A + F +P +A A + Y
Sbjct: 15 VGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNY 74
Query: 553 KRYKGVPLYLEWAPSD 568
+ KG P+ + W+ D
Sbjct: 75 EVIKGRPIRIMWSQRD 90
Score = 57 (25.1 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L FS G+I ++ R +S +A+I F+ +AE A+ N
Sbjct: 15 VGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMN 73
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 149 (57.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 69/277 (24%), Positives = 116/277 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K +K
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKY 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
N++ +R T +R G VS + + R +++ + G+ + +K +
Sbjct: 215 GNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVER-- 272
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
+F K D + R V L VKNL + L K F FG++ KV++
Sbjct: 273 -QTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 124 (48.7 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 27/96 (28%), Positives = 53/96 (55%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N +D+L++ FSK+GN + ++ D++ K S+G +V + E A RA
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGK-SRGFGFVSFERHEDAQRA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+L++V A+ KK + EL Q
Sbjct: 248 VDEMNGKEMNGKLIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 119 (46.9 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ +++D RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 117 (46.2 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 34/93 (36%), Positives = 47/93 (50%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV + G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MDGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 116 (45.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +GR + +M ++ S K + N
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGN 100
Score = 112 (44.5 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + +D+L+D FS+ G ++M ++GKSR F F+ F ++A+ A+
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 105 (42.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 33/128 (25%), Positives = 63/128 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +D+K + +K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMS 219
Query: 118 IEKVTEND 125
I +T+ +
Sbjct: 220 IRVMTDEN 227
Score = 98 (39.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 27/117 (23%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN D+ L+ F ++ G +S++V +NGK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKY---GNAMSIRVMTD-ENGK--SRGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G ++G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTR 290
Score = 89 (36.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 62 (26.9 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L + VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVI----LPSTKTL--ALVVFLEPVEAAAAFKGLAY 552
V +L D +E L + F G++ + + + ++L A V F +P +A A + +
Sbjct: 15 VGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 74
Query: 553 KRYKGVPLYLEWAPSDVLSQSSTSKGN 579
KG P+ + W+ D S + GN
Sbjct: 75 DVIKGRPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 114 (45.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 35/105 (33%), Positives = 53/105 (50%)
Query: 270 GEEDANGEIVDPGNPSSSSKDVQQEVLES--GRLFVRNLPYTATEDELREHFSKFGNVSE 327
G D N +I D G +E L S ++FVRNLP+ T +L+E FS+ G+V
Sbjct: 434 GGLDRNIDI-DRGFVPGPMGGAMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMF 492
Query: 328 VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
I ++ +SKG V + PESA +A +++ GR + V
Sbjct: 493 AEIKMENG--KSKGCGTVRFDSPESAEKACRIMNGIKISGREIDV 535
Score = 108 (43.1 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 46/137 (33%), Positives = 67/137 (48%)
Query: 264 SIHSGVGE-EDANGEIVDPG--N-PSS--SSKDVQQEV---LESGRL----FVRNLPYTA 310
++ G G+ +G V PG N P S ++ ++ EV L++GRL FV NL +
Sbjct: 135 ALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAGRLGSTIFVANLDFKV 194
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+L+E FS G V I DKD K S+G+ V + E A A++ + S+F G+ L
Sbjct: 195 GWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---EQAIEAVQAI--SMFNGQFL 248
Query: 371 HVMPARHKKSSDKQELH 387
P H K DK H
Sbjct: 249 FDRPM-HVKMDDKSVPH 264
Score = 102 (41.0 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G + FDS E
Sbjct: 462 KGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVRFDSPE 514
Query: 674 TATNVCRDLQGTILDGHALILQL 696
+A CR + G + G + ++L
Sbjct: 515 SAEKACRIMNGIKISGREIDVRL 537
Score = 95 (38.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 242
Query: 61 FNKSYL 66
FN +L
Sbjct: 243 FNGQFL 248
Score = 94 (38.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYT----ATEDELREHFSKFGNVSEVHIVVDKDT 336
P + S+ +++ + R+F+ N+PY A +D +RE K G V+ V + D +
Sbjct: 32 PYSKEKSTGSAEKKAINRNRVFISNIPYDMKWQAIKDLMRE---KVGEVTYVELFKDAEG 88
Query: 337 KRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
K S+G V + E +A+E ++ GR L++
Sbjct: 89 K-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 123
Score = 91 (37.1 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 50 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 109
Query: 60 YFNK 63
NK
Sbjct: 110 TMNK 113
Score = 49 (22.3 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ N +F V+NLP+D + +L + F + G
Sbjct: 462 KGNQIF-VRNLPFDLTWQKLKEKFSQCG 488
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 125 (49.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKNL + E L+D FSQ G+ K+MR +G+SR F FI F +EA++A+ +
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 116 (45.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 25/91 (27%), Positives = 51/91 (56%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
K +Q + L+V+NL + +D L+E FS +G ++ ++ + + SKG +V ++
Sbjct: 284 KQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFS 341
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKK 379
PE A++A+ ++ I + L+V A+ K+
Sbjct: 342 SPEEATKAVTEMNGRIVGTKPLYVALAQRKE 372
Score = 116 (45.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 61/269 (22%), Positives = 109/269 (40%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ + +G+ + +M + H+ L S G +K E S + KA
Sbjct: 73 NFEMIKGQPIRIMWS-HRDPG----LRRS-GMGNIFIKNL--------ENSIDNKALYDT 118
Query: 421 FMRPDTVVEN--IARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSS 478
F +++ + + +HG + E ++ A + ++ +K +
Sbjct: 119 FSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQK 178
Query: 479 LEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVILPS---TKTLA 533
E + G +++ VKNL D E L +F +FG KV+ S ++
Sbjct: 179 REAELGARALGF---TNIY-VKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFG 234
Query: 534 LVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562
+ F + EA A + K G LY+
Sbjct: 235 FINFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Score = 106 (42.4 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
+R + +L+VKNL+ D+ L++ F + G I S KV + K GFGF+ F
Sbjct: 289 NRYQGVNLYVKNLDDSINDDRLKEVFSTY---GVITSAKVMTESSHSK----GFGFVCFS 341
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
S E AT ++ G I+ L + L K++ + +
Sbjct: 342 SPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAI 377
Score = 103 (41.3 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V+NL E L++ FS+FG V ++ D + + S+G ++ + E A +A++ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQ-SRGFGFINFEKHEEAQKAVDHM 251
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ G+LL+V A+ K++ + EL Q
Sbjct: 252 NGKEVSGQLLYVGRAQ-KRAERQNELKRRFEQ 282
Score = 94 (38.1 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G I +K++ + G SR F F+ F T + A++AI N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 93 (37.8 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FG++ +V ++ S+G +V + E+A +AI
Sbjct: 99 GNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAIN 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQE 385
++ + R + V H KS K+E
Sbjct: 157 TMNGMLLNDRKVFV---GHFKSRQKRE 180
Score = 90 (36.7 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ + +++VKNL ++ L+ F + G+ SVKV + NG+ S GF
Sbjct: 180 EAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQF---GKTQSVKVMRD-SNGQ--SRGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
GFI F+ E A + G + G L + + + Q
Sbjct: 234 GFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQ 273
Score = 67 (28.6 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 29/105 (27%), Positives = 44/105 (41%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIK 59
S + V +L VTE L + FS G I ++ R +S +A+I F+ +AE A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 60 YFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEK 104
N + I + + DP + R K E S D K
Sbjct: 71 TMNFEMIKGQPIRIMWSHR--DPGLRRSGMGNIFIKNLENSIDNK 113
Score = 63 (27.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVIL----PSTKTL--ALVVFLEPVEAAAAFKGLAY 552
V +L D +E L +MF G++ + + + ++L A + F +P +A A + +
Sbjct: 15 VGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNF 74
Query: 553 KRYKGVPLYLEWAPSD 568
+ KG P+ + W+ D
Sbjct: 75 EMIKGQPIRIMWSHRD 90
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 141 (54.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 69/291 (23%), Positives = 125/291 (42%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S +D SG +F++NL L + FS FG++ I D++ K SKG +V
Sbjct: 114 SQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVH 172
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXK 406
+ +A AI+ L+ + G+ ++V P +K D Q L + + T +
Sbjct: 173 FEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ-LEETKAHYTNLYVKNIN---- 227
Query: 407 ASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSD---LLDREANDLAVRI--ALGETQV 461
SE + + + LF + +V K K ++ E ++ AV+ AL ++++
Sbjct: 228 -SETTD--EQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Query: 462 IAET----KKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFG 516
E + N ++V +++ A + + + + V L VKNL + +L + F
Sbjct: 285 NGEKLYVGRAQKKNERMHVLK-KQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFA 343
Query: 517 KFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562
+G++ KV+ +K V F P EA A + G PLY+
Sbjct: 344 PYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Score = 133 (51.9 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 60/223 (26%), Positives = 100/223 (44%)
Query: 271 EEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHI 330
E+ N I D +++ + Q S L+V +L + +E L + FS G+VS + +
Sbjct: 10 EQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRV 69
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM-----PARHKKSSDK-- 383
D TK S G AYV + E+ +AIE L+ + +GRL +M P+ KK S
Sbjct: 70 CRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIF 129
Query: 384 -QELH----NSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL-FMRPDTVVENIARKHGV 437
+ LH N T ++ A++ +G +K + + F E I +G+
Sbjct: 130 IKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 438 SKSDLLDREANDLAVRIALGETQV-IAETKKALTNAGV-NVSS 478
LL+ + +A ++ E + ETK TN V N++S
Sbjct: 190 ----LLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Score = 128 (50.1 bits), Expect = 0.00013, P = 0.00013
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNK 63
VKNL V +++L + F+ G IT AK+MRT++GKS+ F F+ F T +EA +AI N+
Sbjct: 326 VKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQ 384
Score = 123 (48.4 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 30/112 (26%), Positives = 59/112 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV+NL + +++L E F+ +G ++ ++ ++ K SKG +V ++ PE A++AI
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEK 382
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASG 412
+ I G+ L+V A+ +K + +L Q ++ A+ A+G
Sbjct: 383 NQQIVAGKPLYVAIAQ-RKDVRRSQLAQQI-QARNQMRYQQATAAAAAAAAG 432
Score = 121 (47.7 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 275 NG-EIVDPGNPSSSSKDVQQEVLESG--RLFVRNLPYTATEDELREHFSKFGNVSEVHIV 331
NG EI + S +D Q E ++ L+V+N+ T+++ +E F+KFG + +
Sbjct: 192 NGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLE 251
Query: 332 VDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378
D D K KG +V Y E A +A+E L++S G L+V A+ K
Sbjct: 252 KDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Score = 114 (45.2 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 38/116 (32%), Positives = 57/116 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G+I +K+ ++GKS+ F F+ F E A+EAI N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 63 KSYLDTCRI--SCEIARKVGDPNMPRPWSRYSLKKEKEV-SE--DEKNPVLAAKRG 113
L+ I + ++RK D + + Y+ K + SE DE+ L AK G
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG 243
Score = 113 (44.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 33/131 (25%), Positives = 67/131 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN+ T+++ ++ F++ G I A L + DGK + F F+ + ++A +A++
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
N S L+ ++ A+K + M + LKK+ E EK +A +G ++
Sbjct: 279 LNDSELNGEKLYVGRAQKKNE-RM------HVLKKQYEAYRLEK---MAKYQGVNLFVKN 328
Query: 121 VTENDDPQLLE 131
+ ++ D + LE
Sbjct: 329 LDDSVDDEKLE 339
Score = 111 (44.1 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
D+ ++ + +L+VKN+N +T DE ++ F K G I+S ++K +GK GF
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFA---KFGPIVSASLEKDA-DGK--LKGF 261
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ-VVKK 708
GF+ ++ E A L + L+G L + K + V+KK
Sbjct: 262 GFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKK 306
Score = 110 (43.8 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 33/102 (32%), Positives = 54/102 (52%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+LFVKNL+ DE L + F + G I S KV + +NGK S GFGF+ F + E AT
Sbjct: 323 NLFVKNLDDSVDDEKLEEEFAPY---GTITSAKVMR-TENGK--SKGFGFVCFSTPEEAT 376
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKL 718
+ I+ G L + + +KD + + A++ ++ ++
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQ-RKDVRRSQLAQQIQARNQM 417
Score = 70 (29.7 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKYFNK 63
V +L V+E L D FS G ++ ++ R K S +A++ F + +AI+ N
Sbjct: 42 VGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNY 101
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWS 89
+ + R+ C I DP++ + S
Sbjct: 102 TPIKG-RL-CRIMWSQRDPSLRKKGS 125
Score = 58 (25.5 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 28/122 (22%), Positives = 47/122 (38%)
Query: 464 ETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDK 523
+T + L N + + + ++ ++ S+ V +L SE L +F GS+
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 66
Query: 524 VIL---PSTKT---LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSK 577
+ + TKT A V F + A + L Y KG + W+ D S
Sbjct: 67 IRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDP-SLRKKGS 125
Query: 578 GN 579
GN
Sbjct: 126 GN 127
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 117 (46.2 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ LR FS GEI AKL+R K G S + F+ + T ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSYAR 97
Score = 114 (45.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 34/118 (28%), Positives = 51/118 (43%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G ++D + ++ + L V LP T++ELR FS G + ++ DK S G
Sbjct: 4 GYEDHMAEDCRDDIGRTN-LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLG 62
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+V Y + A RAI L+ Q + + V AR K L+ S T T K
Sbjct: 63 YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 109 (43.4 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
EV++ L++ LP T T+ ++ + FS FG + ++VD+ T S+G+A++ + A
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 98 (39.6 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T+ + D FS G I +++ L+ G SR AFI F EAEEAI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 60 YFN 62
FN
Sbjct: 166 SFN 168
Score = 92 (37.4 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E AS AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 82 (33.9 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 52/225 (23%), Positives = 95/225 (42%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
++ ++ +K +N + LP ++ ++ MF FG + +V++ T L+ V F+
Sbjct: 95 YARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA +F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAITSFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + G++ ++ + +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A+ L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEASMAIASLNG 307
Score = 64 (27.6 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 155 (59.6 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +DV+ E L R+FV +P + TE++LRE F +G++ ++ +K T SKG+ Y
Sbjct: 109 SGSHRDVEDEELT--RIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGY 165
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGT 394
V Y P A++AIE D S R L P S +Q+ ++S Q T
Sbjct: 166 VRYLKPSQAAQAIENCDRSF---RALLAEPKNKVLESPEQDYYSSVRQET 212
Score = 136 (52.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ R+F+ YT+ E LREHFS FG++ ++ +V DK TK SKGIA+V +A A RA+
Sbjct: 25 NSRIFLVISKYTS-ESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAM 83
Query: 358 E 358
E
Sbjct: 84 E 84
Score = 100 (40.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 33/99 (33%), Positives = 44/99 (44%)
Query: 286 SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
S K E RLF+ P+ D L + F +FGN+ EV++V K + YV
Sbjct: 379 SCRKKAPPETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYV 432
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ 384
YA SA+ AI L I G L VM A + K+
Sbjct: 433 KYADRMSANDAITTLHGKILNGVRLKVMLADSPREVSKK 471
Score = 78 (32.5 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
SRI + + KY +E LR+ FS G+I D ++R K K S+ AF+ F +A A++
Sbjct: 26 SRIFLV-ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAME 84
Query: 60 YFNKSYL---DTCRISCEIAR 77
+ L DT I IA+
Sbjct: 85 EMHGQCLGPNDTKPIKVFIAQ 105
Score = 61 (26.5 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRY 555
+F+V N P+ L +F +FG+L +V L S K + V + + + A A L K
Sbjct: 394 LFIVFN-PHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGKIL 452
Query: 556 KGVPLYLEWAPS 567
GV L + A S
Sbjct: 453 NGVRLKVMLADS 464
Score = 59 (25.8 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKA 709
++ +L +GKNV G++++ +A + L G IL+G L + L A +V KK
Sbjct: 419 IEVYLVSGKNV----GYVKYADRMSANDAITTLHGKILNGVRLKVML--ADSPREVSKKR 472
Query: 710 EK 711
++
Sbjct: 473 QR 474
Score = 43 (20.2 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 502 LPYDSSEGELAKMFGKFGSLD--KVI----LPSTKTLALVVFLEPVEAAAAFK 548
+P +E +L + F +G ++ VI +K L V +L+P +AA A +
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 155 (59.6 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +DV+ E L R+FV +P + TE++LRE F +G++ ++ +K T SKG+ Y
Sbjct: 109 SGSHRDVEDEELT--RIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGY 165
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGT 394
V Y P A++AIE D S R L P S +Q+ ++S Q T
Sbjct: 166 VRYLKPSQAAQAIENCDRSF---RALLAEPKNKVLESPEQDYYSSVRQET 212
Score = 136 (52.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ R+F+ YT+ E LREHFS FG++ ++ +V DK TK SKGIA+V +A A RA+
Sbjct: 25 NSRIFLVISKYTS-ESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAM 83
Query: 358 E 358
E
Sbjct: 84 E 84
Score = 100 (40.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 33/99 (33%), Positives = 44/99 (44%)
Query: 286 SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
S K E RLF+ P+ D L + F +FGN+ EV++V K + YV
Sbjct: 379 SCRKKAPPETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYV 432
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ 384
YA SA+ AI L I G L VM A + K+
Sbjct: 433 KYADRMSANDAITTLHGKILNGVRLKVMLADSPREVSKK 471
Score = 78 (32.5 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
SRI + + KY +E LR+ FS G+I D ++R K K S+ AF+ F +A A++
Sbjct: 26 SRIFLV-ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAME 84
Query: 60 YFNKSYL---DTCRISCEIAR 77
+ L DT I IA+
Sbjct: 85 EMHGQCLGPNDTKPIKVFIAQ 105
Score = 61 (26.5 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRY 555
+F+V N P+ L +F +FG+L +V L S K + V + + + A A L K
Sbjct: 394 LFIVFN-PHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGKIL 452
Query: 556 KGVPLYLEWAPS 567
GV L + A S
Sbjct: 453 NGVRLKVMLADS 464
Score = 59 (25.8 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKA 709
++ +L +GKNV G++++ +A + L G IL+G L + L A +V KK
Sbjct: 419 IEVYLVSGKNV----GYVKYADRMSANDAITTLHGKILNGVRLKVML--ADSPREVSKKR 472
Query: 710 EK 711
++
Sbjct: 473 QR 474
Score = 43 (20.2 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 502 LPYDSSEGELAKMFGKFGSLD--KVI----LPSTKTLALVVFLEPVEAAAAFK 548
+P +E +L + F +G ++ VI +K L V +L+P +AA A +
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 116 (45.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLES--GRLFVRNLPYTATEDELREHFS 320
D + G+G VD G S ++ L S ++FVRNLP+ T +L+E FS
Sbjct: 452 DRMGPGIGAILERSIDVDRGFLSGPMGSGMRDRLGSKGNQIFVRNLPFDLTWQKLKEKFS 511
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
+ G+V I ++ +SKG V + PESA +A +++ GR + V
Sbjct: 512 QCGHVMFAEIKMENG--KSKGCGTVRFESPESAEKACRIMNGIKISGREIDV 561
Score = 108 (43.1 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 38/106 (35%), Positives = 52/106 (49%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 217 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 272
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
A A++ + S+F G+ L P H K DK H S +KT
Sbjct: 273 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPHEDYRSHDSKT 315
Score = 102 (41.0 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
DR+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 483 DRLGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 535
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
F+S E+A CR + G + G + ++L
Sbjct: 536 FESPESAEKACRIMNGIKISGREIDVRL 563
Score = 95 (38.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 283
Query: 61 FNKSYL 66
FN +L
Sbjct: 284 FNGQFL 289
Score = 91 (37.1 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150
Query: 60 YFNK 63
NK
Sbjct: 151 TMNK 154
Score = 86 (35.3 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDV---QQEVLESGRLFVRNLPYT----A 310
D +K+ S + E+ + + +P S K+ +++ R+F+ N+PY A
Sbjct: 48 DESVKEE-KSDLKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQA 106
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+D +RE K G V+ V + D + K S+G V + E +A+E ++ GR L
Sbjct: 107 IKDLMRE---KVGEVTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPL 162
Query: 371 HV 372
++
Sbjct: 163 NI 164
Score = 53 (23.7 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 484 AGKTDGL-KRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+G D L + N +F V+NLP+D + +L + F + G
Sbjct: 479 SGMRDRLGSKGNQIF-VRNLPFDLTWQKLKEKFSQCG 514
Score = 45 (20.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 80 GDPNMPRPWSRYSLKKEKEVS-EDEKNPVLAAKRGEKK 116
G+P P S +K E + S ++EK+ + G KK
Sbjct: 30 GEPEKPPRSSANGVKMENDESVKEEKSDLKEKSTGNKK 67
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 116 (45.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLES--GRLFVRNLPYTATEDELREHFS 320
D + G+G VD G S ++ L S ++FVRNLP+ T +L+E FS
Sbjct: 459 DRMGPGIGAILERSIDVDRGFLSGPMGSGMRDRLGSKGNQIFVRNLPFDLTWQKLKEKFS 518
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
+ G+V I ++ +SKG V + PESA +A +++ GR + V
Sbjct: 519 QCGHVMFAEIKMENG--KSKGCGTVRFESPESAEKACRIMNGIKISGREIDV 568
Score = 108 (43.1 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 38/106 (35%), Positives = 52/106 (49%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 217 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 272
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
A A++ + S+F G+ L P H K DK H S +KT
Sbjct: 273 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPHEDYRSHDSKT 315
Score = 102 (41.0 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
DR+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 490 DRLGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 542
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
F+S E+A CR + G + G + ++L
Sbjct: 543 FESPESAEKACRIMNGIKISGREIDVRL 570
Score = 95 (38.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 283
Query: 61 FNKSYL 66
FN +L
Sbjct: 284 FNGQFL 289
Score = 91 (37.1 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150
Query: 60 YFNK 63
NK
Sbjct: 151 TMNK 154
Score = 86 (35.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDV---QQEVLESGRLFVRNLPYT----A 310
D +K+ S + E+ + + +P S K+ +++ R+F+ N+PY A
Sbjct: 48 DESVKEE-KSDLKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQA 106
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+D +RE K G V+ V + D + K S+G V + E +A+E ++ GR L
Sbjct: 107 IKDLMRE---KVGEVTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPL 162
Query: 371 HV 372
++
Sbjct: 163 NI 164
Score = 53 (23.7 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 484 AGKTDGL-KRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+G D L + N +F V+NLP+D + +L + F + G
Sbjct: 486 SGMRDRLGSKGNQIF-VRNLPFDLTWQKLKEKFSQCG 521
Score = 45 (20.9 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 80 GDPNMPRPWSRYSLKKEKEVS-EDEKNPVLAAKRGEKK 116
G+P P S +K E + S ++EK+ + G KK
Sbjct: 30 GEPEKPPRSSANGVKMENDESVKEEKSDLKEKSTGNKK 67
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 113 (44.8 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ ++FVRNLP+ T +L+E FS+ G+V I ++ +SKG V + PESA +A
Sbjct: 532 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENG--KSKGCGTVRFDSPESAEKA 589
Query: 357 IEVLDNSIFQGRLLHV 372
+++ GR + V
Sbjct: 590 CRIMNGIKISGREIDV 605
Score = 108 (43.1 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
DR+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 527 DRIGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 579
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
FDS E+A CR + G + G + ++L
Sbjct: 580 FDSPESAEKACRIMNGIKISGREIDVRL 607
Score = 103 (41.3 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 34/97 (35%), Positives = 47/97 (48%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + +L+E FS G V I DKD K S+G+ V + E A A++ +
Sbjct: 134 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---EQAIEAVQAI 189
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
S+F G+ L P H K DK H S +KT
Sbjct: 190 --SMFNGQFLFDRPM-HVKMDDKSVPHEDYRSHDSKT 223
Score = 95 (38.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 132 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 191
Query: 61 FNKSYL 66
FN +L
Sbjct: 192 FNGQFL 197
Score = 91 (37.1 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 37 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 96
Query: 60 YFNK 63
NK
Sbjct: 97 TMNK 100
Score = 83 (34.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 270 GEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYT----ATEDELREHFSKFGNV 325
G + AN P + +S +++ R+F+ N+PY A +D +RE K G V
Sbjct: 10 GNKKANR--FHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMRE---KVGEV 64
Query: 326 SEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
+ V + D + K S+G V + E +A+E ++ GR L++
Sbjct: 65 TYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 110
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ N +F V+NLP+D + +L + F + G
Sbjct: 532 KGNQIF-VRNLPFDLTWQKLKEKFSQCG 558
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 116 (45.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLES--GRLFVRNLPYTATEDELREHFS 320
D + G+G VD G S ++ L S ++FVRNLP+ T +L+E FS
Sbjct: 476 DRMGPGIGAILERSIDVDRGFLSGPMGSGMRDRLGSKGNQIFVRNLPFDLTWQKLKEKFS 535
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
+ G+V I ++ +SKG V + PESA +A +++ GR + V
Sbjct: 536 QCGHVMFAEIKMENG--KSKGCGTVRFESPESAEKACRIMNGIKISGREIDV 585
Score = 108 (43.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 38/106 (35%), Positives = 52/106 (49%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 217 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 272
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
A A++ + S+F G+ L P H K DK H S +KT
Sbjct: 273 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPHEDYRSHDSKT 315
Score = 102 (41.0 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
DR+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 507 DRLGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 559
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
F+S E+A CR + G + G + ++L
Sbjct: 560 FESPESAEKACRIMNGIKISGREIDVRL 587
Score = 95 (38.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 283
Query: 61 FNKSYL 66
FN +L
Sbjct: 284 FNGQFL 289
Score = 91 (37.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150
Query: 60 YFNK 63
NK
Sbjct: 151 TMNK 154
Score = 86 (35.3 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDV---QQEVLESGRLFVRNLPYT----A 310
D +K+ S + E+ + + +P S K+ +++ R+F+ N+PY A
Sbjct: 48 DESVKEE-KSDLKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQA 106
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+D +RE K G V+ V + D + K S+G V + E +A+E ++ GR L
Sbjct: 107 IKDLMRE---KVGEVTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPL 162
Query: 371 HV 372
++
Sbjct: 163 NI 164
Score = 53 (23.7 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 484 AGKTDGL-KRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+G D L + N +F V+NLP+D + +L + F + G
Sbjct: 503 SGMRDRLGSKGNQIF-VRNLPFDLTWQKLKEKFSQCG 538
Score = 45 (20.9 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 80 GDPNMPRPWSRYSLKKEKEVS-EDEKNPVLAAKRGEKK 116
G+P P S +K E + S ++EK+ + G KK
Sbjct: 30 GEPEKPPRSSANGVKMENDESVKEEKSDLKEKSTGNKK 67
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 114 (45.2 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 35/105 (33%), Positives = 53/105 (50%)
Query: 270 GEEDANGEIVDPGNPSSSSKDVQQEVLES--GRLFVRNLPYTATEDELREHFSKFGNVSE 327
G D N +I D G +E L S ++FVRNLP+ T +L+E FS+ G+V
Sbjct: 509 GGLDRNIDI-DRGFVPGPMGGAMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMF 567
Query: 328 VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
I ++ +SKG V + PESA +A +++ GR + V
Sbjct: 568 AEIKMENG--KSKGCGTVRFDSPESAEKACRIMNGIKISGREIDV 610
Score = 108 (43.1 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 46/137 (33%), Positives = 67/137 (48%)
Query: 264 SIHSGVGE-EDANGEIVDPG--N-PSS--SSKDVQQEV---LESGRL----FVRNLPYTA 310
++ G G+ +G V PG N P S ++ ++ EV L++GRL FV NL +
Sbjct: 203 ALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAGRLGSTIFVANLDFKV 262
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+L+E FS G V I DKD K S+G+ V + E A A++ + S+F G+ L
Sbjct: 263 GWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---EQAIEAVQAI--SMFNGQFL 316
Query: 371 HVMPARHKKSSDKQELH 387
P H K DK H
Sbjct: 317 FDRPM-HVKMDDKSVPH 332
Score = 102 (41.0 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G + FDS E
Sbjct: 537 KGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVRFDSPE 589
Query: 674 TATNVCRDLQGTILDGHALILQL 696
+A CR + G + G + ++L
Sbjct: 590 SAEKACRIMNGIKISGREIDVRL 612
Score = 95 (38.5 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 251 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 310
Query: 61 FNKSYL 66
FN +L
Sbjct: 311 FNGQFL 316
Score = 94 (38.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYT----ATEDELREHFSKFGNVSEVHIVVDKDT 336
P + S+ +++ + R+F+ N+PY A +D +RE K G V+ V + D +
Sbjct: 100 PYSKEKSTGSAEKKAINRNRVFISNIPYDMKWQAIKDLMRE---KVGEVTYVELFKDAEG 156
Query: 337 KRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
K S+G V + E +A+E ++ GR L++
Sbjct: 157 K-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 191
Score = 91 (37.1 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 118 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 177
Query: 60 YFNK 63
NK
Sbjct: 178 TMNK 181
Score = 49 (22.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ N +F V+NLP+D + +L + F + G
Sbjct: 537 KGNQIF-VRNLPFDLTWQKLKEKFSQCG 563
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 141 (54.7 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 62/265 (23%), Positives = 111/265 (41%)
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321
+D S E+ E ++ + + +V E +F+RNL + + E++L E +
Sbjct: 295 EDLAQSDTSSEEQEEEDIEVSKKKRKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQ 354
Query: 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
FG++ V IV+ DT+ SKG A+ + E+A + +E G L + R K
Sbjct: 355 FGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPEAEGGGLK--LDGRQLKV- 411
Query: 382 DKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSD 441
+L + + K L+ K + +G T+ N R + GVS +D
Sbjct: 412 ---DLAVTRDEAAK-LR-----TKKVKKPTG-TR--NLYLAREGLIRAGTKAAEGVSAAD 459
Query: 442 LLDREANDLAVRIALGETQV-IAETKKALTNA--GVNVSSLEEFSAGKTDGLK--RSNHV 496
+ RE +L L + + ++ T+ L N V+ L + T G K R
Sbjct: 460 MAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLNSTRGEKAVRIKEC 519
Query: 497 FLVKNLP--YDSSEGE-LAKMFGKF 518
++++L Y +G+ L F +F
Sbjct: 520 RVMRDLKGAYGKIKGQSLGYAFAEF 544
Score = 135 (52.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 47/183 (25%), Positives = 86/183 (46%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV LP +A ++L E FS+ G V + +V +K +K +G YV +++ E RA++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 361 DNSIFQGRLLHVMPARHK---KSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAW 417
+ F+G ++V A+ K KS +K + NS S K LK K ++
Sbjct: 66 --TTFEGCKINVTIAKKKLRNKSKEKGKTENSESP-EKELKPKKA---KVADKKARLIIR 119
Query: 418 NSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVS 477
N F + ++ + + G + R+ + A + + + E KAL G+N+
Sbjct: 120 NLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALK--GMNMK 177
Query: 478 SLE 480
++
Sbjct: 178 EIK 180
Score = 117 (46.2 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 59/228 (25%), Positives = 104/228 (45%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ ++NL +ED L+ FSQ G I + + R DGK R FAF+ F+ EA +A+K
Sbjct: 114 ARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKG 173
Query: 61 FNKSYLD--TCRISCEIAR----KVGDPNMPRPWSRYSLKKEKEVSE-DEKN--PVLAAK 111
N + T + +A+ ++P + + E E E D++N +
Sbjct: 174 MNMKEIKGRTVAVDWAVAKDKYKSTQSASIP-DYEGEEKRPEPEHQELDQENGREEEDME 232
Query: 112 RGEKKTI----EKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQ 167
GE ++ E+ E+ + +L + +Q+ + VK A + +D + + E S
Sbjct: 233 EGENESDYDDDEEEEEDKESKLPKSVQIHKRAVKRPAPAESS-DEEHSDDDSDLEERDS- 290
Query: 168 AIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAAD-ELMSDMDYFKS 214
I GGE +SD S+ + + E SK +L SD++ K+
Sbjct: 291 -IDGGEDL----AQSDTSSEEQEEEDIEVSKKKRKKRKLPSDVNEGKT 333
Score = 113 (44.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 276 GEIVDPGNPSSSSKDVQQEVLES-GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK 334
G+ + +P K + +V + RL +RNL + +ED+L+ FS+FG + EV+I
Sbjct: 90 GKTENSESPEKELKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKP 149
Query: 335 DTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
D K +G A+V + A +A++ ++ +GR + V
Sbjct: 150 DGKM-RGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAV 186
Score = 96 (38.9 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 54/218 (24%), Positives = 93/218 (42%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS-RQFAFIGFRTEQEAEEAIKYFNK 63
V LP ++L + FSQ G + ++ K K+ R F ++ F ++ + A+K
Sbjct: 8 VGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEITT 67
Query: 64 SYLDTCRISCEIARK-VGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGE---KKTIE 119
+ C+I+ IA+K + + + + + S EKE+ K +A K+ +
Sbjct: 68 --FEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKP--KKAKVADKKARLIIRNLSF 123
Query: 120 KVTENDDPQLL-EF---LQVMQPRV---KSKMWANDTLIGLMADQKAKVSENISQAIKGG 172
K +E+D + +F L+V PR K + +A L+ KA N+ + IKG
Sbjct: 124 KCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKE-IKGR 182
Query: 173 EKSITLHVKSDK-----SNVITDSQATEKSKNAAADEL 205
++ V DK S I D + EK EL
Sbjct: 183 TVAVDWAVAKDKYKSTQSASIPDYEGEEKRPEPEHQEL 220
Score = 71 (30.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 39/155 (25%), Positives = 73/155 (47%)
Query: 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCD 629
L+QS TS Q+ + + +K+ +++L +D++ E +++F++NL+F + +
Sbjct: 297 LAQSDTSSEEQEEEDI---EVSKKKRKKRKLP----SDVN----EGKTVFIRNLSFDSEE 345
Query: 630 ENLRKHFGEHIKE-GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ----- 683
E+L GE +++ G + V++ H S G F +F + E A C +
Sbjct: 346 EDL----GELLQQFGDLKYVRIVLHPDTEH--SKGCAFAQFMTQEAAQK-CLEAASPEAE 398
Query: 684 --GTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
G LDG L + L +DE + +K K T
Sbjct: 399 GGGLKLDGRQLKVDLA-VTRDEAAKLRTKKVKKPT 432
Score = 54 (24.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 33/115 (28%), Positives = 46/115 (40%)
Query: 578 GNQKNDAVVGEHDAKRALLEQ-QLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHF 636
G + + V AKR E + + + D +I R L + NL D+ LRK
Sbjct: 448 GTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTR---LCLHNLPKAVDDKQLRKLL 504
Query: 637 -----GEHIKEGRILSVKVKKHLKNG----KNVSMGFGFIEFDSVETATNVCRDL 682
GE K RI +V + LK K S+G+ F EF E A R +
Sbjct: 505 LNSTRGE--KAVRIKECRVMRDLKGAYGKIKGQSLGYAFAEFQEHEHALAALRHI 557
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 113 (44.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ ++FVRNLP+ T +L+E FS+ G+V I ++ +SKG V + PESA +A
Sbjct: 521 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENG--KSKGCGTVRFDSPESAEKA 578
Query: 357 IEVLDNSIFQGRLLHV 372
+++ GR + V
Sbjct: 579 CRIMNGIKISGREIDV 594
Score = 105 (42.0 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
Identities = 38/106 (35%), Positives = 51/106 (48%)
Query: 296 LESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
L++GRL FV NL + +L+E FS G V I DKD K S+G+ V + E
Sbjct: 226 LQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGK-SRGMGTVTF---E 281
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS-TSQGTKT 396
A A++ + S+F G+ L P H K DK H S KT
Sbjct: 282 QAIEAVQAI--SMFNGQFLFDRPM-HVKMDDKSVPHEEYRSHDGKT 324
Score = 104 (41.7 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 611 DRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
+R+ S+ +FV+NL F + L++ F + G ++ ++K ++NGK S G G +
Sbjct: 516 ERIGSKGNQIFVRNLPFDLTWQKLKEKFSQC---GHVMFAEIK--MENGK--SKGCGTVR 568
Query: 669 FDSVETATNVCRDLQGTILDGHALILQL 696
FDS E+A CR + G + G + ++L
Sbjct: 569 FDSPESAEKACRIMNGIKISGREIDVRL 596
Score = 95 (38.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ FS G + A + KDGKSR + F EA +AI
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 61 FNKSYL 66
FN +L
Sbjct: 293 FNGQFL 298
Score = 91 (37.1 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P + ++D +K GE+T +L + +GKSR + F+ E+ ++A++
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159
Query: 60 YFNK 63
NK
Sbjct: 160 TMNK 163
Score = 83 (34.3 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 30/114 (26%), Positives = 52/114 (45%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYT----ATEDELREH 318
D G + AN P + +S +++ R+F+ N+PY A +D +RE
Sbjct: 66 DLKEKSTGSKKANR--FHPYSKDKNSGAGEKKGPNRNRVFISNIPYDMKWQAIKDLMRE- 122
Query: 319 FSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
K G V+ V + D + K S+G V + E +A+E ++ GR L++
Sbjct: 123 --KVGEVTYVELFKDAEGK-SRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 173
Score = 49 (22.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ N +F V+NLP+D + +L + F + G
Sbjct: 521 KGNQIF-VRNLPFDLTWQKLKEKFSQCG 547
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 140 (54.3 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 63/244 (25%), Positives = 106/244 (43%)
Query: 258 DSIIKDSIHSGVGEE----DANGEIVDPGNPSSSSKDVQQ---EVLESGRLFVRNLPYTA 310
DS +K+ S GEE D N E + + S K ++ +V E +F+RNL + +
Sbjct: 279 DSGLKERDDSIDGEELAQSDTNSEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDS 338
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
E+EL E +FG++ V IV+ DT+ SKG A+ + E+A + +E G L
Sbjct: 339 EEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLK 398
Query: 371 HVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVEN 430
+ R + +L + + K + K + +G T+ N R +
Sbjct: 399 --LDGRQLRV----DLAVTRDEAAKLQTK------KVKKPTG-TR--NLYLAREGLIRAG 443
Query: 431 IARKHGVSKSDLLDREANDLAVRIALGETQV-IAETKKALTNA--GVNVSSLEEFSAGKT 487
GVS +D+ RE +L L + + +++T+ L N GV+ L + T
Sbjct: 444 TKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNAT 503
Query: 488 DGLK 491
G K
Sbjct: 504 RGEK 507
Score = 128 (50.1 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV LP +A ++L E FS+ G + + +V +K +K +G YV +++ E RA++ +
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 361 DNSIFQGRLLHVMPARHK---KSSDKQELHNS 389
+ F+G ++V A+ K KS +K E NS
Sbjct: 66 --TTFEGCKINVTIAKKKQRNKSKEKGENENS 95
Score = 117 (46.2 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 36/127 (28%), Positives = 62/127 (48%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ ++NL +ED L+ F Q G + + + R DGK R FAF+ F+ EA +A+K
Sbjct: 114 ARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKS 173
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRG-EKKTIE 119
N + ++ + A V S S EK + K+ L+ + G E++ +E
Sbjct: 174 MNMKEIKGRTVAVDWA--VAKDKYKNTQSA-SAPGEKR--PEPKHQELSKENGREEEDME 228
Query: 120 KVTENDD 126
+ E +D
Sbjct: 229 EEEEEED 235
Score = 107 (42.7 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 271 EEDANGEIVDPGNPSSSSKDVQQEVLES-GRLFVRNLPYTATEDELREHFSKFGNVSEVH 329
+E E +P P K + +V + RL +RNL + +ED+L+ F ++G V EV+
Sbjct: 87 KEKGENENSEP--PKKEPKPKKPKVADKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVN 144
Query: 330 IVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
I D K +G A+V + A +A++ ++ +GR + V
Sbjct: 145 IPRKPDGKM-RGFAFVQFKNLLEAGKALKSMNMKEIKGRTVAV 186
Score = 106 (42.4 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 31/125 (24%), Positives = 63/125 (50%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
+++NL + SE +L +FG++G++ +V +P + A V F +EA A K +
Sbjct: 117 IIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNM 176
Query: 553 KRYKGVPLYLEWAPS-DVL--SQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADID 609
K KG + ++WA + D +QS+++ G ++ + E + E+ +E + + D
Sbjct: 177 KEIKGRTVAVDWAVAKDKYKNTQSASAPGEKRPEPKHQELSKENGREEEDMEEEEEEEDD 236
Query: 610 PDRVE 614
+ E
Sbjct: 237 TEEEE 241
Score = 98 (39.6 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 51/216 (23%), Positives = 89/216 (41%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS-RQFAFIGFRTEQEAEEAIKYFNK 63
V LP ++L + FSQ G + ++ K K+ R F ++ F ++ + A+K
Sbjct: 8 VSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT 67
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGE---KKTIEK 120
+ C+I+ IA+K N + + + K P +A K+ + K
Sbjct: 68 --FEGCKINVTIAKKK-QRNKSKEKGENENSEPPKKEPKPKKPKVADKKARLIIRNLSFK 124
Query: 121 VTENDDPQLL-EF---LQVMQPRV---KSKMWANDTLIGLMADQKAKVSENISQAIKGGE 173
+E+D + ++ L+V PR K + +A L+ KA S N+ + IKG
Sbjct: 125 CSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKE-IKGRT 183
Query: 174 KSITLHVKSDK-SNVITDSQATEKSKNAAADELMSD 208
++ V DK N + S EK EL +
Sbjct: 184 VAVDWAVAKDKYKNTQSASAPGEKRPEPKHQELSKE 219
Score = 83 (34.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
L ++NL+FK +++L+ FG++ G +L V + + +GK GF F++F ++ A
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQY---GAVLEVNIPRK-PDGK--MRGFAFVQFKNLLEAGK 169
Query: 678 VCRDLQGTILDGHALILQLCHAK 700
+ + + G + + AK
Sbjct: 170 ALKSMNMKEIKGRTVAVDWAVAK 192
Score = 68 (29.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 43/169 (25%), Positives = 72/169 (42%)
Query: 565 APSDVLSQSSTSKG-NQKNDAVVGEHDAKRALLEQQLEGVTDADID-------PDRV-ES 615
A S S G +++D++ GE A+ ++ E D I P V E
Sbjct: 268 AESSEEDHSDEDSGLKERDDSIDGEELAQSDTNSEEQED-EDMQISKKKKRKLPSDVNEG 326
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKE-GRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
+++F++NL+F + +E L GE +++ G + V++ H S G F +F + E
Sbjct: 327 KTVFIRNLSFDSEEEEL----GELLQQFGDLKYVRIVLHPDTEH--SKGCAFAQFMTQEA 380
Query: 675 ATNVCRDLQ-------GTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
A C + G LDG L + L +DE + +K K T
Sbjct: 381 AQK-CLEAASPETEGGGLKLDGRQLRVDLA-VTRDEAAKLQTKKVKKPT 427
Score = 66 (28.3 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 35/183 (19%), Positives = 68/183 (37%)
Query: 374 PARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIAR 433
P + QEL + + +++ E + S +P + + R
Sbjct: 204 PGEKRPEPKHQELSKENGREEEDMEEEEEEEDDTEEEEDGEEDKESRVTKPAQIQKRAVR 263
Query: 434 KHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLK-- 491
+ ++S D D ++ ++ E ++ TN+ + S K L
Sbjct: 264 RAAPAESSEEDHSDEDSGLK-ERDDSIDGEELAQSDTNSEEQEDEDMQISKKKKRKLPSD 322
Query: 492 -RSNHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL-PSTKTLALVVFLEPVEAAAAF 547
++NL +DS E EL ++ +FG L +++L P T+ F + + AA
Sbjct: 323 VNEGKTVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQ 382
Query: 548 KGL 550
K L
Sbjct: 383 KCL 385
Score = 51 (23.0 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHF-----GEHIKEGRILSVKVKKHLK--NGK--NVSMG 663
V L + NL D+ LRK GE K R+ +V + LK +GK S+G
Sbjct: 476 VSQTRLCLHNLPKGVDDKELRKLLLNATRGE--KGVRLKECRVMRDLKGVHGKVKGQSLG 533
Query: 664 FGFIEFDSVETATNVCRDL 682
+ F EF E A R +
Sbjct: 534 YAFAEFQEHEHALTALRHI 552
Score = 42 (19.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 700 KKDEQVVKKAEKDKSSTKLLVRNVAFE 726
KK+ + K DK + +L++RN++F+
Sbjct: 99 KKEPKPKKPKVADKKA-RLIIRNLSFK 124
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 152 (58.6 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 56/186 (30%), Positives = 84/186 (45%)
Query: 277 EIVDPGNPSSSSKDVQQEVL-ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD 335
E+ +P SS ++ E +FVRN+PY A + L+EHFS FG V VVDK+
Sbjct: 286 EMEEPEKKEESSHPKKKSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKE 345
Query: 336 TKRSKGIAYVLYA-----------IPESASRAIEVLDNS----IFQGRLLHVMPARHKKS 380
T +KG A+V +A P AS ++ + D+ ++QGR+L + A + S
Sbjct: 346 TGLAKGSAFVAFAKEDAYLDCLDNAPTVASTSMLIADDVSPSYVYQGRILSIASAVDRDS 405
Query: 381 SDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKS 440
+ K NS LK+ +A G N + + EN +SK+
Sbjct: 406 ASKLADRNS-------LKRKEAL----GKAPGEKDKRNLFLLNEGRITENSKLAQYISKT 454
Query: 441 DLLDRE 446
DL RE
Sbjct: 455 DLELRE 460
Score = 135 (52.6 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 269 VGEEDANGE--IVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVS 326
+ EED N +V+ + S Q + L+ LFVR++P+ AT +EL E FS+F V
Sbjct: 1 MSEEDVNKSNVMVESVDLKQESVKNQDDGLDRKTLFVRSIPFEATSEELSEFFSQFVPVK 60
Query: 327 EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378
IV D + K S+G +V + + + A+ + F+ RLL V A+ +
Sbjct: 61 HAVIVTDNERK-SRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRR 111
Score = 88 (36.0 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 39/204 (19%), Positives = 81/204 (39%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
V+++P T + L +FFSQ + A ++ + KSR F F+ F + + A+ K+
Sbjct: 37 VRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKSRGFGFVSFTLDDDCLTALVESRKT 96
Query: 65 YLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTEN 124
+ ++A++ D +P +++ V EK R + +K E
Sbjct: 97 KFKDRLLRVDVAKR-RDR---KPQEGNERQEKSHVEPIEKRRARLIIRNLPWSCKKPDEL 152
Query: 125 DD--PQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIK--GGEKSITLHV 180
+ P+ K + + + A+ + Q +K G E ++ V
Sbjct: 153 KKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGLKIDGREVAVDFAV 212
Query: 181 KSDKSNVITDSQATEKSKNAAADE 204
+ K + D + E+ N +++E
Sbjct: 213 EKSKWEQMKDEEVEEEEDNESSEE 236
Score = 78 (32.5 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 35/154 (22%), Positives = 67/154 (43%)
Query: 498 LVKNLPYDSSE-GELAKMFGKFGSLDKVILPSTKT-----LALVVFLEPVEAAAAFKGLA 551
+++NLP+ + EL K+F K+G++ +P K A V+ + A A +G
Sbjct: 138 IIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQ 197
Query: 552 YKRYKGVPLYLEWA-PSDVLSQSSTSKGNQK--NDAVVGEHDAKRALLEQQLEGVTDADI 608
+ G + +++A Q + ++ N++ E +A ++ E D D
Sbjct: 198 GLKIDGREVAVDFAVEKSKWEQMKDEEVEEEEDNESSEEEEEADSTNKDENDEEEEDKDD 257
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKE 642
+ D ++ S F LN D+ L F E ++E
Sbjct: 258 ESDNDDASSEF-DELNEVNSDKELDS-FDEEMEE 289
Score = 72 (30.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 55/243 (22%), Positives = 97/243 (39%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLE 539
EE S K ++ V+N+PYD+ L + F FG++ K LP + L
Sbjct: 294 EESSHPKKKSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTV-KYALP---VVDKETGLA 349
Query: 540 PVEAAAAF-KGLAYKR-YKGVPLYLEWAP--SDVLSQSSTSKGNQKNDAVVGEHDAKRAL 595
A AF K AY P + +D +S S +G + A + D+ L
Sbjct: 350 KGSAFVAFAKEDAYLDCLDNAPTVASTSMLIADDVSPSYVYQGRILSIASAVDRDSASKL 409
Query: 596 LEQQ-LEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVK-KH 653
++ L+ P + R+LF+ N T + L ++ + E R S K++ +
Sbjct: 410 ADRNSLKRKEALGKAPGEKDKRNLFLLNEGRITENSKLAQYISKTDLELREKSYKLRTQQ 469
Query: 654 LKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD--EQVVKKAEK 711
LK + + + ++ A N + L+ G ++Q K+ Q + K E
Sbjct: 470 LKKNPTLHLSLTRLAIRNLPRAMNA-KALKAL---GRKAVVQFATEVKEGKRQPLSKEEV 525
Query: 712 DKS 714
++S
Sbjct: 526 NRS 528
Score = 59 (25.8 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 634 KHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL- 692
KH G +K+ +++ ++VK + G+ S G+GFIEF + A R L+ H +
Sbjct: 551 KHKGV-VKQAKVI-MEVKGSGETGR--SRGYGFIEFRDHKAALMGLR-----WLNAHEVS 601
Query: 693 ILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFE 726
I ++ DE+ K AE + + + L+ A E
Sbjct: 602 IPEILEGLTDEEK-KLAELEGLNKRRLIVEFAIE 634
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 700 KKDEQVVKKAEKDKSST-KLLVRNVAFEA 727
KK+E K + ++ + VRN+ ++A
Sbjct: 292 KKEESSHPKKKSNRQEPFSIFVRNIPYDA 320
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 152 (58.6 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 56/186 (30%), Positives = 84/186 (45%)
Query: 277 EIVDPGNPSSSSKDVQQEVL-ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD 335
E+ +P SS ++ E +FVRN+PY A + L+EHFS FG V VVDK+
Sbjct: 286 EMEEPEKKEESSHPKKKSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKE 345
Query: 336 TKRSKGIAYVLYA-----------IPESASRAIEVLDNS----IFQGRLLHVMPARHKKS 380
T +KG A+V +A P AS ++ + D+ ++QGR+L + A + S
Sbjct: 346 TGLAKGSAFVAFAKEDAYLDCLDNAPTVASTSMLIADDVSPSYVYQGRILSIASAVDRDS 405
Query: 381 SDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKS 440
+ K NS LK+ +A G N + + EN +SK+
Sbjct: 406 ASKLADRNS-------LKRKEAL----GKAPGEKDKRNLFLLNEGRITENSKLAQYISKT 454
Query: 441 DLLDRE 446
DL RE
Sbjct: 455 DLELRE 460
Score = 135 (52.6 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 269 VGEEDANGE--IVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVS 326
+ EED N +V+ + S Q + L+ LFVR++P+ AT +EL E FS+F V
Sbjct: 1 MSEEDVNKSNVMVESVDLKQESVKNQDDGLDRKTLFVRSIPFEATSEELSEFFSQFVPVK 60
Query: 327 EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378
IV D + K S+G +V + + + A+ + F+ RLL V A+ +
Sbjct: 61 HAVIVTDNERK-SRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRR 111
Score = 88 (36.0 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 39/204 (19%), Positives = 81/204 (39%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
V+++P T + L +FFSQ + A ++ + KSR F F+ F + + A+ K+
Sbjct: 37 VRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKSRGFGFVSFTLDDDCLTALVESRKT 96
Query: 65 YLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTEN 124
+ ++A++ D +P +++ V EK R + +K E
Sbjct: 97 KFKDRLLRVDVAKR-RDR---KPQEGNERQEKSHVEPIEKRRARLIIRNLPWSCKKPDEL 152
Query: 125 DD--PQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIK--GGEKSITLHV 180
+ P+ K + + + A+ + Q +K G E ++ V
Sbjct: 153 KKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGLKIDGREVAVDFAV 212
Query: 181 KSDKSNVITDSQATEKSKNAAADE 204
+ K + D + E+ N +++E
Sbjct: 213 EKSKWEQMKDEEVEEEEDNESSEE 236
Score = 78 (32.5 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 35/154 (22%), Positives = 67/154 (43%)
Query: 498 LVKNLPYDSSE-GELAKMFGKFGSLDKVILPSTKT-----LALVVFLEPVEAAAAFKGLA 551
+++NLP+ + EL K+F K+G++ +P K A V+ + A A +G
Sbjct: 138 IIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQ 197
Query: 552 YKRYKGVPLYLEWA-PSDVLSQSSTSKGNQK--NDAVVGEHDAKRALLEQQLEGVTDADI 608
+ G + +++A Q + ++ N++ E +A ++ E D D
Sbjct: 198 GLKIDGREVAVDFAVEKSKWEQMKDEEVEEEEDNESSEEEEEADSTNKDENDEEEEDKDD 257
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKE 642
+ D ++ S F LN D+ L F E ++E
Sbjct: 258 ESDNDDASSEF-DELNEVNSDKELDS-FDEEMEE 289
Score = 72 (30.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 55/243 (22%), Positives = 97/243 (39%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLE 539
EE S K ++ V+N+PYD+ L + F FG++ K LP + L
Sbjct: 294 EESSHPKKKSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTV-KYALP---VVDKETGLA 349
Query: 540 PVEAAAAF-KGLAYKR-YKGVPLYLEWAP--SDVLSQSSTSKGNQKNDAVVGEHDAKRAL 595
A AF K AY P + +D +S S +G + A + D+ L
Sbjct: 350 KGSAFVAFAKEDAYLDCLDNAPTVASTSMLIADDVSPSYVYQGRILSIASAVDRDSASKL 409
Query: 596 LEQQ-LEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVK-KH 653
++ L+ P + R+LF+ N T + L ++ + E R S K++ +
Sbjct: 410 ADRNSLKRKEALGKAPGEKDKRNLFLLNEGRITENSKLAQYISKTDLELREKSYKLRTQQ 469
Query: 654 LKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD--EQVVKKAEK 711
LK + + + ++ A N + L+ G ++Q K+ Q + K E
Sbjct: 470 LKKNPTLHLSLTRLAIRNLPRAMNA-KALKAL---GRKAVVQFATEVKEGKRQPLSKEEV 525
Query: 712 DKS 714
++S
Sbjct: 526 NRS 528
Score = 59 (25.8 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 634 KHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL- 692
KH G +K+ +++ ++VK + G+ S G+GFIEF + A R L+ H +
Sbjct: 551 KHKGV-VKQAKVI-MEVKGSGETGR--SRGYGFIEFRDHKAALMGLR-----WLNAHEVS 601
Query: 693 ILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFE 726
I ++ DE+ K AE + + + L+ A E
Sbjct: 602 IPEILEGLTDEEK-KLAELEGLNKRRLIVEFAIE 634
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 700 KKDEQVVKKAEKDKSST-KLLVRNVAFEA 727
KK+E K + ++ + VRN+ ++A
Sbjct: 292 KKEESSHPKKKSNRQEPFSIFVRNIPYDA 320
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 108 (43.1 bits), Expect = 9.4e-13, Sum P(3) = 9.4e-13
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL++ + L++ F H G+++ ++K ++NGK S G G + FDS E+A
Sbjct: 482 IFVRNLSYDLSWQKLKEKFS-HC--GQVMYAEIK--MENGK--SKGCGTVRFDSPESAEK 534
Query: 678 VCRDLQGTILDGHALILQL 696
CR + GT ++G + ++L
Sbjct: 535 ACRLMNGTKINGREVDVRL 553
Score = 103 (41.3 bits), Expect = 9.4e-13, Sum P(3) = 9.4e-13
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 265 IHSGVGEEDANGEIVDPGNPSSSSKDVQQEV---LESGRL----FVRNLPYTATEDELRE 317
++ G +D++G + P +++ ++ E+ L++GRL FV NL + +L+E
Sbjct: 173 MYGGGRGQDSSGINIPPS--IANNPNIPHEIISALQAGRLGATIFVANLDFKVGWKKLKE 230
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
F G V + DKD K S+G+ V + P A +AI + + + R +HV
Sbjct: 231 VFGMAGTVRRADVKEDKDGK-SRGMGTVTFEQPLEAVQAISMFNGQMLFDRQMHV 284
Score = 102 (41.0 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNL Y + +L+E FS G V I ++ +SKG V + PESA +A +
Sbjct: 481 QIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENG--KSKGCGTVRFDSPESAEKACRL 538
Query: 360 LDNSIFQGRLLHV 372
++ + GR + V
Sbjct: 539 MNGTKINGREVDV 551
Score = 89 (36.4 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I V NL V +L++ F G + A + KDGKSR + F EA +AI FN
Sbjct: 214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
Query: 63 KSYLDTCRISCEIARKVGDPNMPRP 87
L ++ ++ K P+ RP
Sbjct: 274 GQMLFDRQMHVKMDDKSLPPDDFRP 298
Score = 89 (36.4 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 30/107 (28%), Positives = 50/107 (46%)
Query: 271 EEDANGEIVDPGNP-SSSSKDVQQEVLESGRLFVRNLPYT----ATEDELREHFSKFGNV 325
E+++ G +P S ++ R+F+ N+PY A +D +RE K G V
Sbjct: 52 EKNSGGRKSHRYHPYKERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMRE---KVGEV 108
Query: 326 SEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
+ V + D + K S+G V + E +AIEV+ GR L++
Sbjct: 109 TYVELFKDGEGK-SRGCGVVEFKDEEFVKKAIEVMSKHDLNGRPLNI 154
Score = 86 (35.3 bits), Expect = 9.4e-13, Sum P(3) = 9.4e-13
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+R+ + N+P ++D +K GE+T +L + +GKSR + F+ E+ ++AI+
Sbjct: 81 NRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIE 140
Query: 60 YFNKSYLD 67
+K L+
Sbjct: 141 VMSKHDLN 148
Score = 49 (22.3 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL 521
+ G +D K +F V+NL YD S +L + F G +
Sbjct: 468 YMGGMSDRSKGGCQIF-VRNLSYDLSWQKLKEKFSHCGQV 506
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 149 (57.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N + QQ+ ES LF+ LP+T ++EL++ F+ +GNV + +DK+T++SK
Sbjct: 271 NQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCF 330
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379
+V Y +SA AI+ L+ +G+ L V R K+
Sbjct: 331 GFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
Score = 120 (47.3 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 286 SSSKDVQQEVLESG--RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
S + QQ+ + G +FV ++P + E+ + + F+KFGN+ ++ I+ DK T SKG A
Sbjct: 3 SLQQQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCA 62
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVM--PARHKKSSDKQE 385
++ ++ E A A+ + S G L M P + K S ++ E
Sbjct: 63 FITFSTKEEADNALNTTNES---GTFLENMNKPLQVKYSDNEIE 103
Score = 96 (38.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 14 EDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
ED++R F G I D ++R KDGK + + FI + T E+E A++
Sbjct: 119 EDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALR 164
Score = 94 (38.1 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
ES LF+ L F DE L++ F + G ++S KV + S FGF+ +D+ +
Sbjct: 285 ESNDLFIYYLPFTYGDEELKQLFAPY---GNVISSKV--FIDKNTQQSKCFGFVSYDNTQ 339
Query: 674 TATNVCRDLQGTILDGHAL 692
+A ++L G ++G L
Sbjct: 340 SAIAAIQELNGRAIEGKKL 358
Score = 93 (37.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 25/101 (24%), Positives = 51/101 (50%)
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFS 320
K+ + + + +G ++ N K E+ + R LF+ L T+ ED++R F
Sbjct: 69 KEEADNALNTTNESGTFLENMNKPLQVKYSDNEIEKMERKLFIGMLG-TSDEDQIRILFG 127
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361
+G + +++IV +KD K KG ++ Y+ + + A+ +D
Sbjct: 128 NYGIIEDLNIVREKDGK-PKGYGFIKYSTRDESENALREID 167
Score = 83 (34.3 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYF 61
+ V ++P + E+ + F++ G I D +++ K S+ AFI F T++EA+ A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 62 NKS 64
N+S
Sbjct: 80 NES 82
Score = 77 (32.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 606 ADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+D + +++E R LF+ L T DE+ +R FG + G I + + + K+GK G+
Sbjct: 98 SDNEIEKME-RKLFIGMLG--TSDEDQIRILFGNY---GIIEDLNIVRE-KDGK--PKGY 148
Query: 665 GFIEFDSVETATNVCRDLQGT-ILDGHALILQLCHAKKDEQVVKK 708
GFI++ + + + N R++ G L G L + + A + Q KK
Sbjct: 149 GFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQKRKK 193
Score = 48 (22.0 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAA 546
SN +F+ LP+ + EL ++F +G++ KV + +K V + A AA
Sbjct: 286 SNDLFIYY-LPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAA 344
Query: 547 FKGLAYKRYKGVPL 560
+ L + +G L
Sbjct: 345 IQELNGRAIEGKKL 358
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 103 (41.3 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNL K + L D FS G I K+ + GKS+ + F+ + E+ A+EAI+ N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Score = 103 (41.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN P VTE LR F+ GEIT ++ D K+R+F FI + + A+ A+
Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPYGEITS--MIVKMDNKNRKFCFINYADAESAKNAMDN 250
Query: 61 FN-KSYLDTCRI 71
N K D +I
Sbjct: 251 LNGKKITDDGQI 262
Score = 101 (40.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL + LRE F FG ++ ++ D + ++SKG +V +A E A++A+ +
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 361 DNSIFQGRLLHV 372
I G+ L+V
Sbjct: 511 HLKIINGKPLYV 522
Score = 100 (40.3 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 42/201 (20%), Positives = 83/201 (41%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+N P + TE LR+ F+ +G ++ + +V D K K ++ YA ESA A++ L
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEITSM--IVKMDNKNRK-FCFINYADAESAKNAMDNL 251
Query: 361 DNSIF--QGRLLHVM-PARHKKSSDKQELHNSTSQGT---KTLKQXXXXXXKASEASGNT 414
+ G++ P + + ++ N T+ GT KT K +E ++
Sbjct: 252 NGKKITDDGQIDETYDPKKEEATASTSGAANQTT-GTDADKTDKNDKNNKADKNEKGDSS 310
Query: 415 KAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV 474
A N+ T + G + + + ++ L + T +N +
Sbjct: 311 NANNNATATGATTTDTTTTP-GETTTTTANADSTGANNNNGLSPNTNTSNTTTGSSNNSI 369
Query: 475 NVSSLEEFSAGKTDGLKRSNH 495
N++ +AG + +N+
Sbjct: 370 NLNENNN-TAGNNNSTNNNNN 389
Score = 99 (39.9 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 39/133 (29%), Positives = 68/133 (51%)
Query: 582 NDAVVGEHD--AKR-ALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGE 638
N VG H A+R A+L+ + + + + ++ + +L++KNL+ D LR+ F
Sbjct: 415 NILYVGPHQSRARRHAILKAKFDNLNVEN--KNKHQGVNLYIKNLDDGIDDIMLRELFEP 472
Query: 639 HIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698
G I S KV +++ K S GFGF+ F S E A ++ I++G L + L
Sbjct: 473 F---GTITSAKV---MRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGL-- 524
Query: 699 AKKDEQVVKKAEK 711
A+K EQ + + ++
Sbjct: 525 AEKREQRLSRLQQ 537
Score = 99 (39.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E F+ G+VS + + D T++S G AYV Y A RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ +M + S K N
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTGN 105
Score = 97 (39.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S +D +G +FV+NL + L + FS FGN+ + D+ K SK +V
Sbjct: 92 SHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGK-SKSYGFVH 150
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMP 374
Y ESA AIE ++ + ++V P
Sbjct: 151 YEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 77 (32.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 33/106 (31%), Positives = 49/106 (46%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FVKNL+ K+ D + F G ILS KV + GK+ S +GF+ ++ E+A
Sbjct: 105 NIFVKNLD-KSIDN--KALFDTFSMFGNILSCKVATD-EFGKSKS--YGFVHYEDEESAK 158
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G L G + KK E +A D T L V+N
Sbjct: 159 EAIEKVNGVQL-GSKNVYVGPFIKKSE----RATNDTKFTNLYVKN 199
Score = 76 (31.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+L+VKN + +LR+ F + G I S+ VK KN K F FI + E+A
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPY---GEITSMIVKMDNKNRK-----FCFINYADAESAK 245
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDE 703
N +L G + I + KK+E
Sbjct: 246 NAMDNLNGKKITDDGQIDETYDPKKEE 272
Score = 60 (26.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L + VTE L + F+ G ++ ++ R KS +A++ + +AE A+ N
Sbjct: 20 VGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Score = 54 (24.1 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS 528
L + V V + S T+ K +N VKN P +E L ++F +G + +I+
Sbjct: 169 LGSKNVYVGPFIKKSERATNDTKFTN--LYVKNFPDSVTETHLRQLFNPYGEITSMIVKM 226
Query: 529 TKTLALVVFLEPVEAAAA 546
F+ +A +A
Sbjct: 227 DNKNRKFCFINYADAESA 244
Score = 51 (23.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYK 553
+KNL + L ++F FG++ KV+ +K V F EA A + K
Sbjct: 454 IKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Query: 554 RYKGVPLYL 562
G PLY+
Sbjct: 514 IINGKPLYV 522
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 103 (41.3 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNL K + L D FS G I K+ + GKS+ + F+ + E+ A+EAI+ N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Score = 103 (41.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN P VTE LR F+ GEIT ++ D K+R+F FI + + A+ A+
Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPYGEITS--MIVKMDNKNRKFCFINYADAESAKNAMDN 250
Query: 61 FN-KSYLDTCRI 71
N K D +I
Sbjct: 251 LNGKKITDDGQI 262
Score = 101 (40.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL + LRE F FG ++ ++ D + ++SKG +V +A E A++A+ +
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 361 DNSIFQGRLLHV 372
I G+ L+V
Sbjct: 511 HLKIINGKPLYV 522
Score = 100 (40.3 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 42/201 (20%), Positives = 83/201 (41%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+N P + TE LR+ F+ +G ++ + +V D K K ++ YA ESA A++ L
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEITSM--IVKMDNKNRK-FCFINYADAESAKNAMDNL 251
Query: 361 DNSIF--QGRLLHVM-PARHKKSSDKQELHNSTSQGT---KTLKQXXXXXXKASEASGNT 414
+ G++ P + + ++ N T+ GT KT K +E ++
Sbjct: 252 NGKKITDDGQIDETYDPKKEEATASTSGAANQTT-GTDADKTDKNDKNNKADKNEKGDSS 310
Query: 415 KAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV 474
A N+ T + G + + + ++ L + T +N +
Sbjct: 311 NANNNATATGATTTDTTTTP-GETTTTTANADSTGANNNNGLSPNTNTSNTTTGSSNNSI 369
Query: 475 NVSSLEEFSAGKTDGLKRSNH 495
N++ +AG + +N+
Sbjct: 370 NLNENNN-TAGNNNSTNNNNN 389
Score = 99 (39.9 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 39/133 (29%), Positives = 68/133 (51%)
Query: 582 NDAVVGEHD--AKR-ALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGE 638
N VG H A+R A+L+ + + + + ++ + +L++KNL+ D LR+ F
Sbjct: 415 NILYVGPHQSRARRHAILKAKFDNLNVEN--KNKHQGVNLYIKNLDDGIDDIMLRELFEP 472
Query: 639 HIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698
G I S KV +++ K S GFGF+ F S E A ++ I++G L + L
Sbjct: 473 F---GTITSAKV---MRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGL-- 524
Query: 699 AKKDEQVVKKAEK 711
A+K EQ + + ++
Sbjct: 525 AEKREQRLSRLQQ 537
Score = 99 (39.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E F+ G+VS + + D T++S G AYV Y A RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ +M + S K N
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTGN 105
Score = 97 (39.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S +D +G +FV+NL + L + FS FGN+ + D+ K SK +V
Sbjct: 92 SHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGK-SKSYGFVH 150
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMP 374
Y ESA AIE ++ + ++V P
Sbjct: 151 YEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 77 (32.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 33/106 (31%), Positives = 49/106 (46%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FVKNL+ K+ D + F G ILS KV + GK+ S +GF+ ++ E+A
Sbjct: 105 NIFVKNLD-KSIDN--KALFDTFSMFGNILSCKVATD-EFGKSKS--YGFVHYEDEESAK 158
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G L G + KK E +A D T L V+N
Sbjct: 159 EAIEKVNGVQL-GSKNVYVGPFIKKSE----RATNDTKFTNLYVKN 199
Score = 76 (31.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+L+VKN + +LR+ F + G I S+ VK KN K F FI + E+A
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPY---GEITSMIVKMDNKNRK-----FCFINYADAESAK 245
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDE 703
N +L G + I + KK+E
Sbjct: 246 NAMDNLNGKKITDDGQIDETYDPKKEE 272
Score = 60 (26.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L + VTE L + F+ G ++ ++ R KS +A++ + +AE A+ N
Sbjct: 20 VGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Score = 54 (24.1 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS 528
L + V V + S T+ K +N VKN P +E L ++F +G + +I+
Sbjct: 169 LGSKNVYVGPFIKKSERATNDTKFTN--LYVKNFPDSVTETHLRQLFNPYGEITSMIVKM 226
Query: 529 TKTLALVVFLEPVEAAAA 546
F+ +A +A
Sbjct: 227 DNKNRKFCFINYADAESA 244
Score = 51 (23.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYK 553
+KNL + L ++F FG++ KV+ +K V F EA A + K
Sbjct: 454 IKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Query: 554 RYKGVPLYL 562
G PLY+
Sbjct: 514 IINGKPLYV 522
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 107 (42.7 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ KNLP VT+D L++ F EI +L+ +KDGKS+ A+I F+TE +AE+ ++
Sbjct: 317 LLAKNLPYKVTQDELKEVFEDAVEI---RLV-SKDGKSKGIAYIEFKTEADAEKTLE 369
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ + NL TE+ L++ F + T K+ + ++GKS+ +AFI F + ++A+EA+ N
Sbjct: 403 LVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 459
Query: 63 KSYLDTCRISCEIARKVGDPN 83
K ++ I E+ G PN
Sbjct: 460 KREIEGRAIRLELQGPRGSPN 480
Score = 102 (41.0 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 37/110 (33%), Positives = 57/110 (51%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
KD +++ ++ L +NLPY T+DEL+E F + E+ +V KD K SKGIAY+ +
Sbjct: 306 KDSKKD-RDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV-SKDGK-SKGIAYIEFK 359
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG-TKTL 397
A + +E QG + + + S D + NST G +KTL
Sbjct: 360 TEADAEKTLEEK-----QGTEIDYTGEKGQ-SQDHRGGKNSTWSGESKTL 403
Score = 98 (39.6 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK-RSKGIAYVLYAIPESASR 355
ES L + NL Y+ATE+ L+E F K HI V ++ +SKG A++ +A E A
Sbjct: 399 ESKTLVLSNLSYSATEETLQEVFEK-----ATHIKVPQNQNGKSKGYAFIEFASFEDAKE 453
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL 397
A+ + +GR + + + + S N+ SQ +KTL
Sbjct: 454 ALNSCNKREIEGRAIR-LELQGPRGSP-----NARSQPSKTL 489
Score = 92 (37.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S LFV+ L TE+ L+E F G++ IV D++T SKG +V + E A A
Sbjct: 486 SKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 542
Query: 358 EVLDNSIFQG 367
E +++ G
Sbjct: 543 EAMEDGEIDG 552
Score = 90 (36.7 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S++LFVK L+ T +E L++ F I+ RI++ + + G S GFGF++F+S E
Sbjct: 486 SKTLFVKGLSEDTTEETLKESFDGSIR-ARIVTDR-----ETGS--SKGFGFVDFNSEED 537
Query: 675 ATNVCRDLQGTILDGHALILQLCHAK 700
A ++ +DG+ + L K
Sbjct: 538 AKAAKEAMEDGEIDGNKVTLDWAKPK 563
Score = 90 (36.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
ES++L + NL++ +E L++ F + +KV ++ +NGK S G+ FIEF S E
Sbjct: 399 ESKTLVLSNLSYSATEETLQEVFE------KATHIKVPQN-QNGK--SKGYAFIEFASFE 449
Query: 674 TATNVCRDLQGTILDGHALILQL 696
A ++G A+ L+L
Sbjct: 450 DAKEALNSCNKREIEGRAIRLEL 472
Score = 62 (26.9 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 37/139 (26%), Positives = 64/139 (46%)
Query: 6 KNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAI-----KY 60
K+ P+ T + D F++ D ++ + G SR+F ++ F + ++ E+A+ K
Sbjct: 240 KSAPELKTG--ISDLFAKN----DLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKV 293
Query: 61 F-NKSYLDTCR----ISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEK 115
F N+ L+ + AR + N+P ++ LK EV ED L +K G+
Sbjct: 294 FGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELK---EVFEDAVEIRLVSKDGKS 350
Query: 116 KTIEKV---TENDDPQLLE 131
K I + TE D + LE
Sbjct: 351 KGIAYIEFKTEADAEKTLE 369
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 94 KKEKEVSEDEKNPVLAAKRGEKKTIEK 120
++E+E E+E+ PV A KK + K
Sbjct: 182 EEEEEEEEEEEEPVKEAPGKRKKEMAK 208
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 108 (43.1 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 283 NPSSSSKDVQQEVLESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
NP+ ++ + L++GRL FV NL Y +L+E FS G V I+ DKD K
Sbjct: 175 NPNIPNEIIH--ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGK- 231
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
S+GI V + E A A++ + S+F G+LL P H K ++
Sbjct: 232 SRGIGTVTF---EQAIEAVQAI--SMFNGQLLFDRPM-HVKMDER 270
Score = 99 (39.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 483 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVRFESPEVAERACRM 540
Query: 360 LDNSIFQGRLLHV 372
++ +GR + V
Sbjct: 541 MNGIQLRGREIDV 553
Score = 98 (39.6 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 193 STVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISM 252
Query: 61 FNKSYL 66
FN L
Sbjct: 253 FNGQLL 258
Score = 96 (38.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 60 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 118
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 119 VLNKHSLGGRPLKV 132
Score = 93 (37.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 60 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 119
Query: 61 FNKSYL 66
NK L
Sbjct: 120 LNKHSL 125
Score = 92 (37.4 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G + F+S E A
Sbjct: 484 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVRFESPEVAER 536
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 537 ACRMMNGIQLRGREIDVRI 555
Score = 44 (20.5 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 470 TGGPAAGVARKACQIFVRNLPFDFTWKMLKDKFNECG 506
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 107 (42.7 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ KNLP VT+D L++ F EI +L+ +KDGKS+ A+I F+TE +AE+ ++
Sbjct: 322 LLAKNLPYKVTQDELKEVFEDAVEI---RLV-SKDGKSKGIAYIEFKTEADAEKTLE 374
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ + NL TE+ L++ F + T K+ + ++GKS+ +AFI F + ++A+EA+ N
Sbjct: 408 LVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 63 KSYLDTCRISCEIARKVGDPN 83
K ++ I E+ G PN
Sbjct: 465 KREIEGRAIRLELQGPRGSPN 485
Score = 102 (41.0 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 37/110 (33%), Positives = 57/110 (51%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
KD +++ ++ L +NLPY T+DEL+E F + E+ +V KD K SKGIAY+ +
Sbjct: 311 KDSKKD-RDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV-SKDGK-SKGIAYIEFK 364
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG-TKTL 397
A + +E QG + + + S D + NST G +KTL
Sbjct: 365 TEADAEKTLEEK-----QGTEIDYTGEKGQ-SQDHRGGKNSTWSGESKTL 408
Score = 98 (39.6 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK-RSKGIAYVLYAIPESASR 355
ES L + NL Y+ATE+ L+E F K HI V ++ +SKG A++ +A E A
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFEK-----ATHIKVPQNQNGKSKGYAFIEFASFEDAKE 458
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL 397
A+ + +GR + + + + S N+ SQ +KTL
Sbjct: 459 ALNSCNKREIEGRAIR-LELQGPRGSP-----NARSQPSKTL 494
Score = 92 (37.4 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S LFV+ L TE+ L+E F G++ IV D++T SKG +V + E A A
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 547
Query: 358 EVLDNSIFQG 367
E +++ G
Sbjct: 548 EAMEDGEIDG 557
Score = 90 (36.7 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S++LFVK L+ T +E L++ F I+ RI++ + + G S GFGF++F+S E
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFDGSIR-ARIVTDR-----ETGS--SKGFGFVDFNSEED 542
Query: 675 ATNVCRDLQGTILDGHALILQLCHAK 700
A ++ +DG+ + L K
Sbjct: 543 AKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 90 (36.7 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
ES++L + NL++ +E L++ F + +KV ++ +NGK S G+ FIEF S E
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFE------KATHIKVPQN-QNGK--SKGYAFIEFASFE 454
Query: 674 TATNVCRDLQGTILDGHALILQL 696
A ++G A+ L+L
Sbjct: 455 DAKEALNSCNKREIEGRAIRLEL 477
Score = 62 (26.9 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 37/139 (26%), Positives = 64/139 (46%)
Query: 6 KNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAI-----KY 60
K+ P+ T + D F++ D ++ + G SR+F ++ F + ++ E+A+ K
Sbjct: 245 KSAPELKTG--ISDLFAKN----DLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKV 298
Query: 61 F-NKSYLDTCR----ISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEK 115
F N+ L+ + AR + N+P ++ LK EV ED L +K G+
Sbjct: 299 FGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELK---EVFEDAVEIRLVSKDGKS 355
Query: 116 KTIEKV---TENDDPQLLE 131
K I + TE D + LE
Sbjct: 356 KGIAYIEFKTEADAEKTLE 374
Score = 45 (20.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 94 KKEKEVSEDEKNPVLAAKRGEKKTIEK 120
++E+E E+E+ PV A KK + K
Sbjct: 187 EEEEEEEEEEEEPVKEAPGKRKKEMAK 213
Score = 43 (20.2 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 95 KEKEVSEDEKNPVLAAKRGEK 115
+++E+SEDE + A G+K
Sbjct: 29 EDEEMSEDEDGKAVVATSGKK 49
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 107 (42.7 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
+ KNLP VT+D L++ F EI +L+ +KDGKS+ A+I F+TE +AE+ ++
Sbjct: 322 LLAKNLPYKVTQDELKEVFEDAVEI---RLV-SKDGKSKGIAYIEFKTEADAEKTLE 374
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ + NL TE+ L++ F + T K+ + ++GKS+ +AFI F + ++A+EA+ N
Sbjct: 408 LVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 63 KSYLDTCRISCEIARKVGDPN 83
K ++ I E+ G PN
Sbjct: 465 KREIEGRAIRLELQGPRGSPN 485
Score = 102 (41.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 37/110 (33%), Positives = 57/110 (51%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
KD +++ ++ L +NLPY T+DEL+E F + E+ +V KD K SKGIAY+ +
Sbjct: 311 KDSKKD-RDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV-SKDGK-SKGIAYIEFK 364
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG-TKTL 397
A + +E QG + + + S D + NST G +KTL
Sbjct: 365 TEADAEKTLEEK-----QGTEIDYTGEKGQ-SQDHRGGKNSTWSGESKTL 408
Score = 98 (39.6 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK-RSKGIAYVLYAIPESASR 355
ES L + NL Y+ATE+ L+E F K HI V ++ +SKG A++ +A E A
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFEK-----ATHIKVPQNQNGKSKGYAFIEFASFEDAKE 458
Query: 356 AIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL 397
A+ + +GR + + + + S N+ SQ +KTL
Sbjct: 459 ALNSCNKREIEGRAIR-LELQGPRGSP-----NARSQPSKTL 494
Score = 92 (37.4 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S LFV+ L TE+ L+E F G++ IV D++T SKG +V + E A A
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 547
Query: 358 EVLDNSIFQG 367
E +++ G
Sbjct: 548 EAMEDGEIDG 557
Score = 90 (36.7 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S++LFVK L+ T +E L++ F I+ RI++ + + G S GFGF++F+S E
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFDGSIR-ARIVTDR-----ETGS--SKGFGFVDFNSEED 542
Query: 675 ATNVCRDLQGTILDGHALILQLCHAK 700
A ++ +DG+ + L K
Sbjct: 543 AKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 90 (36.7 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
ES++L + NL++ +E L++ F + +KV ++ +NGK S G+ FIEF S E
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFE------KATHIKVPQN-QNGK--SKGYAFIEFASFE 454
Query: 674 TATNVCRDLQGTILDGHALILQL 696
A ++G A+ L+L
Sbjct: 455 DAKEALNSCNKREIEGRAIRLEL 477
Score = 62 (26.9 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 37/139 (26%), Positives = 64/139 (46%)
Query: 6 KNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAI-----KY 60
K+ P+ T + D F++ D ++ + G SR+F ++ F + ++ E+A+ K
Sbjct: 245 KSAPELKTG--ISDLFAKN----DLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKV 298
Query: 61 F-NKSYLDTCR----ISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEK 115
F N+ L+ + AR + N+P ++ LK EV ED L +K G+
Sbjct: 299 FGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELK---EVFEDAVEIRLVSKDGKS 355
Query: 116 KTIEKV---TENDDPQLLE 131
K I + TE D + LE
Sbjct: 356 KGIAYIEFKTEADAEKTLE 374
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 139 (54.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 66/277 (23%), Positives = 117/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K S ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G+ + +K +
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 275 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 135 (52.6 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
SL ++ KTL++ V +P + F ++Y++++ +E +S G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+ ++A L+++ E + I R + +L++KNL+ DE LRK F
Sbjct: 266 AQKKV------ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G I S KV L++G+ S GFGF+ F S E AT ++ G I+ L + L
Sbjct: 318 ---GSITSAKVM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Query: 700 KKDEQ 704
K++ +
Sbjct: 371 KEERK 375
Score = 129 (50.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 114 (45.2 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 111 (44.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 111 (44.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DE+L++ F + G+ LSVKV + +GK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF---GKTLSVKVMRD-PSGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 111 (44.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 248 VEEMNGKEISGKVIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 98 (39.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 130 (50.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 65/290 (22%), Positives = 121/290 (41%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S++D + G +F++NL + L E FS FG + + +D T RSKG +V
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQ 182
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHV--MPARHKKSSDKQE-LHNSTSQGTKTLKQXXXX 403
+ ESA AI+ L+ + + + V R +++ D+ T+ K L +
Sbjct: 183 FEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGE 242
Query: 404 XXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVR--IALGETQV 461
+ + G +S + D +R G + + A+ + I+LG+
Sbjct: 243 D-ELRKTFGKFGVISSAVVMRDQ--SGNSRCFGFVNFECTEAAASAVEKMNGISLGDD-- 297
Query: 462 IAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGS 520
+ +A + +F + + ++S L +KNL + +L +MF ++G+
Sbjct: 298 VLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN 357
Query: 521 L--DKVIL-PS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+ KV+L P ++ V + P EA A + K PLY+ A
Sbjct: 358 VTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 122 (48.0 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKNLPK + ED LR F + G I+ A +MR + G SR F F+ F + A A++
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 61 FN 62
N
Sbjct: 289 MN 290
Score = 115 (45.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/86 (26%), Positives = 51/86 (59%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
E + L+++NL + +++L+E FS++GNV+ ++++ S+G +V Y+ PE A
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEA 385
Query: 354 SRAIEVLDNSIFQGRLLHVMPARHKK 379
RA+ ++ + + L++ A+ K+
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQRKE 411
Score = 113 (44.8 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
++ + +L++KNL+ DE L++ F E+ G + S KV + N + +S GFGF+ +
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEY---GNVTSSKV---MLNPQGMSRGFGFVAYS 380
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ E A ++ G ++ L + L K+D +
Sbjct: 381 NPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 100 (40.3 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L + FS G I K+ G+S+ + F+ F E+ A+ AI N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 63 KSYLDTCRISCE--IAR--KVGDPNMPRP-WSRYSLKK-EKEVSEDE 103
++ ++ I R + D N P P ++ +K KE+ EDE
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDE 244
Score = 91 (37.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 29/99 (29%), Positives = 51/99 (51%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKNL + ++ LRK FG K G I S V + ++G S FGF+ F+ E A
Sbjct: 230 NVYVKNLPKEIGEDELRKTFG---KFGVISSAVVMRD-QSGN--SRCFGFVNFECTEAAA 283
Query: 677 NVCRDLQGTILDGHALILQLCHAK--KDEQVVKKAEKDK 713
+ + G L L + K ++E++ +K E+++
Sbjct: 284 SAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 90 (36.7 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P S V + + L+ +L TE L + F NV V + D++ +RS G A
Sbjct: 34 PLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYA 92
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
Y+ ++ P A RA+E L+ + R + +M + S+
Sbjct: 93 YINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPST 130
Score = 81 (33.6 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 31/107 (28%), Positives = 52/107 (48%)
Query: 492 RSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAA 546
R +V+ VKNLP + E EL K FGKFG + ++ +++ V F E EAAA+
Sbjct: 227 RFTNVY-VKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF-ECTEAAAS 284
Query: 547 FKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKR 593
A ++ G+ L DVL K +++ + + + + +R
Sbjct: 285 ----AVEKMNGISL-----GDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 81 (33.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 31/121 (25%), Positives = 59/121 (48%)
Query: 609 DPD-RVESR-SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666
DP R+ + ++F+KNL+ ++ L + F G ILS KV + G+ S G+GF
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSF---GTILSCKVAMDV-TGR--SKGYGF 180
Query: 667 IEFDSVETATNVCRDLQGTILDGHALILQLCH-AKKDEQVVKKAEKDKSSTKLLVRNVAF 725
++F+ E+A L G +++ + + H ++ E+ + T + V+N+
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVG--HFIRRQERARDENTPTPRFTNVYVKNLPK 238
Query: 726 E 726
E
Sbjct: 239 E 239
Score = 69 (29.3 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 9 PKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
PK VTE L D F + ++ R ++ +S +A+I F +A A++ N
Sbjct: 58 PK-VTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
>DICTYBASE|DDB_G0270156 [details] [associations]
symbol:DDB_G0270156 "RNA-binding protein 28"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0270156
EMBL:AAFI02000005 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT RefSeq:XP_646584.1
ProteinModelPortal:Q55C97 EnsemblProtists:DDB0190846 GeneID:8617554
KEGG:ddi:DDB_G0270156 InParanoid:Q55C97 ProtClustDB:CLSZ2846931
Uniprot:Q55C97
Length = 900
Score = 171 (65.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 74/314 (23%), Positives = 135/314 (42%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSK---GIAYVLYAIPES 352
+ + ++FV+ L T ++L FS G + IV ++ K K GIAYV YA+ E
Sbjct: 1 MNNKQVFVKGLTPDTTNEDLENFFSDIGPLKRCFIVTKQNEKGEKVCSGIAYVWYALAEH 60
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARHK--KSSDKQELHNSTSQGTKTLKQXXXXXXKASEA 410
A +AI+ +N + +++HV A+ K K K + S+ +K +
Sbjct: 61 AEKAIKEKNNKQLKSKIIHVSIAKEKLSKKDSKDSKDSKDSKDSKDTTTATTTTTTTTPE 120
Query: 411 SGNTKAWNSLFMRPDTVVEN--IARKHGVS-----KSDLLDR-----EANDLAVRIALGE 458
K +N+ + +V+ N +A K VS K D + +ND A+RI
Sbjct: 121 EPIVKQYNT--KKEFSVIANNLVAEKVFVSNFLSLKKDTIKAVYSIPHSND-AIRIVCEN 177
Query: 459 TQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKF 518
+ + + LT N + A + D LK +N + +++NL ++++ L + F +
Sbjct: 178 QENLKQVVTKLTKNKQN-NGKSVLYAVENDNLK-ANEL-IIRNLSFNTNIQFLVEKFSSY 234
Query: 519 GSLDKVILPS---TKT---LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA--PSDVL 570
G L V +P+ T T A + F E + K ++ + ++W+ +D
Sbjct: 235 GQLILVKVPTKPGTNTPRGFAFLTFKERESSEKVLKECNNEKIHTRQIVIDWSLKQNDYQ 294
Query: 571 SQSSTSKGNQKNDA 584
+ QK D+
Sbjct: 295 QLQFDKQQQQKQDS 308
Score = 126 (49.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++EV E LF+RNL + E++L F ++G + +V+DK T++ G A+V Y +
Sbjct: 396 KKEVDELKTLFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKPTGKAFVKYHEQD 455
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTS 391
A RA+E ++ L +++K S K+ NS S
Sbjct: 456 DARRAVEACSSTPLYDLSLEDKINKNQKDSKKESKKNSLS 495
Score = 97 (39.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 608 IDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFI 667
++ D +++ L ++NL+F T + L + F + G+++ VKV K G N GF F+
Sbjct: 203 VENDNLKANELIIRNLSFNTNIQFLVEKFSSY---GQLILVKVPT--KPGTNTPRGFAFL 257
Query: 668 EFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVK--KAEKDKSSTK 717
F E++ V ++ + +++ + D Q ++ K ++ K +K
Sbjct: 258 TFKERESSEKVLKECNNEKIHTRQIVIDWSLKQNDYQQLQFDKQQQQKQDSK 309
Score = 90 (36.7 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 25/105 (23%), Positives = 47/105 (44%)
Query: 291 VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIP 350
V+ + L++ L +RNL + L E FS +G + V + T +G A++ +
Sbjct: 203 VENDNLKANELIIRNLSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLTFKER 262
Query: 351 ESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTK 395
ES+ + ++ +N R ++ K +D Q+L Q K
Sbjct: 263 ESSEKVLKECNNEKIHTR--QIVIDWSLKQNDYQQLQFDKQQQQK 305
Score = 85 (35.0 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 31/133 (23%), Positives = 62/133 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS--RQFAFIGFRTEQEAEEAI 58
+ + ++NL L + FS G++ K+ TK G + R FAF+ F+ + +E+ +
Sbjct: 211 NELIIRNLSFNTNIQFLVEKFSSYGQLILVKVP-TKPGTNTPRGFAFLTFKERESSEKVL 269
Query: 59 KYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTI 118
K N + T +I + + K D + + K++ + ++D + + E K
Sbjct: 270 KECNNEKIHTRQIVIDWSLKQNDYQQLQFDKQQQQKQDSKENKDNDDDDDEDEEDEDKED 329
Query: 119 EKVTENDDPQLLE 131
K EN+D ++ E
Sbjct: 330 NK-DENEDEEMKE 341
Score = 80 (33.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 34/146 (23%), Positives = 67/146 (45%)
Query: 577 KGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRV-ESRSLFVKNLNFKTCDENLRKH 635
+G D GE D K + L+ + + D + V E ++LF++NL F T +E+L
Sbjct: 363 EGEDDEDDEDGEGDKKESKLDVKKKMAIDHTRNKKEVDELKTLFIRNLAFDTKEEDLGAK 422
Query: 636 FGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695
F E+ G+++ ++ K G F+++ + A T L +L +
Sbjct: 423 FEEY---GKLVFCRLVLDKLTQKPT--GKAFVKYHEQDDARRAVEACSSTPLYDLSLEDK 477
Query: 696 LCHAKKDEQVVKKAEKDKSSTKLLVR 721
+ +KD + K+++K+ S L++
Sbjct: 478 INKNQKDSK--KESKKNSLSVSSLLQ 501
Score = 78 (32.5 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 35/153 (22%), Positives = 66/153 (43%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQ----FAFIGFRTEQEAEEA 57
++ VK L T + L +FFS G + ++ ++ K + A++ + + AE+A
Sbjct: 5 QVFVKGLTPDTTNEDLENFFSDIGPLKRCFIVTKQNEKGEKVCSGIAYVWYALAEHAEKA 64
Query: 58 IKYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
IK N L + I IA++ + + S+ S K+ + S+D K+ A T
Sbjct: 65 IKEKNNKQLKSKIIHVSIAKE----KLSKKDSKDS--KDSKDSKDSKDTTTATTTTTTTT 118
Query: 118 IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTL 150
E+ EF + V K++ ++ L
Sbjct: 119 PEEPIVKQYNTKKEFSVIANNLVAEKVFVSNFL 151
Score = 52 (23.4 bits), Expect = 3.1e-05, Sum P(4) = 3.1e-05
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-TKTLALVVFLEPVEAAAAFKGLAYKRY 555
++NL +D+ E +L F ++G L +++L T+ F++ E A + A +
Sbjct: 407 IRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKPTGKAFVKYHEQDDARR--AVEAC 464
Query: 556 KGVPLYLEWAPSDVLS--QSSTSKGNQKNDAVV 586
PLY + + D ++ Q + K ++KN V
Sbjct: 465 SSTPLY-DLSLEDKINKNQKDSKKESKKNSLSV 496
Score = 51 (23.0 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 28/109 (25%), Positives = 46/109 (42%)
Query: 581 KNDAVVGEHDAKRALLEQQL--EGVTDADIDPDR-VESRSLFVKNLNFKTCDENLRKHFG 637
+N A E D K L Q E T ++P+ V L ++NL D L+
Sbjct: 548 QNSAEGKELDEKDWALRNQADKENQTKLKVNPNYYVSPTRLCIRNLPLHVTDTILKNATM 607
Query: 638 EHIK----EGRILSVKV----KKHLKNGKNVSMGFGFIEFDSVETATNV 678
+ +K + +++ KV ++ GK S GF FIE + + A +
Sbjct: 608 KILKTANIKDKVVFAKVACDNERVNAQGKAKSKGFAFIECSTHQGALEI 656
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 138 (53.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 71/280 (25%), Positives = 117/280 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G K K+ K + ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGAKA-KEFTNVYIKNFGEEVDDESLK 208
Query: 419 SLFMR-PDTVVENIARK-HGVSKS-DLLDREAND---LAVRIALGE--TQVIAETKKALT 470
LF + T+ + R +G SK + E ++ AV G+ + I +A
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILP 527
+F K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 269 KVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 528 S--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 134 (52.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
SL ++ KTL++ V +P + F ++Y++++ +E +S G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+ ++A L+++ E + I R + +L++KNL+ DE LRK F
Sbjct: 266 AQKKV------ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G I S KV L++G+ S GFGF+ F S E AT ++ G I+ L + L
Sbjct: 318 ---GSITSAKVM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Query: 700 KKDEQ 704
K++ +
Sbjct: 371 KEERK 375
Score = 129 (50.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 115 (45.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DE+L++ F + G+ LSVKV + NGK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF---GKTLSVKVMRD-PNGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 114 (45.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 113 (44.8 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D + K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 248 VEEMNGKEISGKIIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 112 (44.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR +GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 98 (39.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-SLRKSGVGN 100
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 134 (52.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V+NL T+DEL+ F ++G++S ++ D D K S+ +V + PE A+RA+E L
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVEAL 285
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGT 394
+ F + +V A+ KKS + EL QG+
Sbjct: 286 NGKKFDDKEWYVGKAQ-KKSERELELSRRYEQGS 318
Score = 129 (50.5 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKNL + T+D L+ F Q G I+ A +MR DGKSR F F+ F ++A A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 61 FNKSYLD 67
N D
Sbjct: 285 LNGKKFD 291
Score = 120 (47.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL T T+++LRE F++FG ++ ++ D + SKG +V ++ ASR + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ + G+ L+V A+ K+ + +L SQ
Sbjct: 389 NGKMVGGKPLYVALAQRKEER-RAKLQAQFSQ 419
Score = 120 (47.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 42/151 (27%), Positives = 71/151 (47%)
Query: 566 PSDVLSQSSTSKGNQKNDA--VVGEHDAK--RAL-LEQQLE-GVTDADIDPDRVESRSLF 619
P D G + +D VG+ K R L L ++ E G +D ++ + +L+
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGG---NKFDGLNLY 331
Query: 620 VKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVC 679
VKNL+ DE LR+ F E G I S KV +++ S G GF+ F + A+ V
Sbjct: 332 VKNLDDTVTDEKLRELFAEF---GTITSCKV---MRDPSGTSKGSGFVAFSAASEASRVL 385
Query: 680 RDLQGTILDGHALILQLCHAKKDEQVVKKAE 710
++ G ++ G L + L K++ + +A+
Sbjct: 386 NEMNGKMVGGKPLYVALAQRKEERRAKLQAQ 416
Score = 103 (41.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 22/88 (25%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L + T+ +L ++F++ V V + D T S G YV Y+ + A +A++ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ S G+++ + + S+ + + N
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGN 135
Score = 100 (40.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/106 (25%), Positives = 51/106 (48%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D+++ +++VKNL+ T D+ L+ FG++ G I S V +++G S FGF+ F+
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQY---GSISSAVV---MRDGDGKSRCFGFVNFE 273
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
+ E A L G D + K + ++ ++ S+
Sbjct: 274 NPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSS 319
Score = 99 (39.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK-HLKNGKNVSMGFGFIEFDSVETA 675
+LFVKNL+ ++ L + F G I+S KV H+ G+ S G+GF++FD+ ++A
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGC---GTIVSCKVATDHM--GQ--SRGYGFVQFDTEDSA 187
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVA 724
N L G +L+ + + K++ + A+K K T + V+N++
Sbjct: 188 KNAIEKLNGKVLNDKQIFVGPFLRKEERE--SAADKMKF-TNVYVKNLS 233
Score = 98 (39.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
VKNL K V L + FS G I K+ G+SR + F+ F TE A+ AI+ N
Sbjct: 138 VKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197
Query: 65 YLDTCRI 71
L+ +I
Sbjct: 198 VLNDKQI 204
Score = 74 (31.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V +L VT+ +L D+F++ ++ ++ R S + ++ + +AE+A++ N
Sbjct: 50 VGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNY 109
Query: 64 SYLD 67
SYL+
Sbjct: 110 SYLN 113
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVE 542
D +K +N V+ VKNL +++ EL FG++GS+ ++ ++ V F P +
Sbjct: 220 DKMKFTN-VY-VKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPED 277
Query: 543 AAAAFKGLAYKRYKGVPLYL 562
AA A + L K++ Y+
Sbjct: 278 AARAVEALNGKKFDDKEWYV 297
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 157 (60.3 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 39/108 (36%), Positives = 59/108 (54%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +DV+ E L R+FV +P T TE++LRE F +G++ I+ +K T SKG+ Y
Sbjct: 136 SGSHRDVEDEELT--RIFVM-IPKTYTEEDLREKFKMYGDIEYCSIIKNKTTGESKGLGY 192
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
V Y P A+RAIE D S R + P S + E +++ ++
Sbjct: 193 VRYLKPSQAARAIEECDRSY---RAILAEPKNKSSESFEHEYYSNNAR 237
Score = 106 (42.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321
+ S S E + G ++ + S + E S R+FV L A E +RE F+
Sbjct: 18 EQSQRSTTAREPSGGSAMEESSGFRLSAECLDEPPNS-RVFVV-LGKDAGEALIRERFAP 75
Query: 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
FG++ + ++ DK T S+GIA++ +A A RA+E
Sbjct: 76 FGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAME 112
Score = 66 (28.3 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 511 LAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567
L +F +FG+L KV L + K +A F + A+ A L K GV L + A S
Sbjct: 434 LEDVFCRFGNLIKVYLVAGKNVAYAKFADRASASEAITALHGKIVNGVRLKVRLADS 490
Score = 62 (26.9 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
SR+ V L K E +R+ F+ G+I + L+R K +SR AFI F +A A++
Sbjct: 54 SRVFVV-LGKDAGEALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAME 112
Query: 60 YFNKSYL--DTCRISCEIAR 77
+ L DT I IA+
Sbjct: 113 EMHGRSLVPDTKPIKVFIAQ 132
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 145 (56.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 68/277 (24%), Positives = 116/277 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + ++A RAIE
Sbjct: 100 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIE 157
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ E+ + T +K K
Sbjct: 158 KMNGMLLNDRKVFV--GRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKY 215
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ T +R G VS K + ++ ++ G+T + +K +
Sbjct: 216 GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 276 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGR 332
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 333 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Score = 137 (53.3 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V +P + F ++Y++++ +E L+ + G +
Sbjct: 217 KTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKM----- 271
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 272 -ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 325
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L+ G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 326 VM--LEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 376
Score = 131 (51.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 28/92 (30%), Positives = 55/92 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ +++++ RSKG +V ++ PE A++A+ +
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEM 354
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 355 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 385
Score = 111 (44.1 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGN 101
Score = 109 (43.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN D+ L++ F ++ G+ LSVKV GK S GF
Sbjct: 181 EAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKY---GKTLSVKVMTD-PTGK--SRGF 234
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ GT L+G + + K + Q K + ++ + + R
Sbjct: 235 GFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISR 291
Score = 100 (40.3 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + RL++ F + G+ K+M GKSR F F+ + ++A +A++
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 61 FNKSYLD 67
N + L+
Sbjct: 252 MNGTELN 258
Score = 99 (39.9 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 31/126 (24%), Positives = 63/126 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T+ A+ AI+ N
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 160
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + M + ++ +K + +D++ L K G+ +
Sbjct: 161 GMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLS 220
Query: 118 IEKVTE 123
++ +T+
Sbjct: 221 VKVMTD 226
Score = 58 (25.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L +TE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 16 VGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 74
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 138 (53.6 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 71/280 (25%), Positives = 117/280 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G K K+ K + ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGAKA-KEFTNVYIKNFGEEVDDESLK 208
Query: 419 SLFMR-PDTVVENIARK-HGVSKS-DLLDREAND---LAVRIALGE--TQVIAETKKALT 470
LF + T+ + R +G SK + E ++ AV G+ + I +A
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILP 527
+F K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 269 KVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 528 S--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 134 (52.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
SL ++ KTL++ V +P + F ++Y++++ +E +S G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+ ++A L+++ E + I R + +L++KNL+ DE LRK F
Sbjct: 266 AQKKV------ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G I S KV L++G+ S GFGF+ F S E AT ++ G I+ L + L
Sbjct: 318 ---GSITSAKVM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Query: 700 KKDEQ 704
K++ +
Sbjct: 371 KEERK 375
Score = 129 (50.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 115 (45.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DE+L++ F + G+ LSVKV + NGK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF---GKTLSVKVMRD-PNGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 114 (45.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 113 (44.8 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D + K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 248 VEEMNGKEISGKIIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 112 (44.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR +GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 98 (39.6 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 151 (58.2 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +DV+ E L R+FV +P + TE++LRE F +G++ I+ +K T SKG+ Y
Sbjct: 109 SGSHRDVEDEELT--RIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGY 165
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
V Y P A++AIE D S R + P S +Q+ +++ Q
Sbjct: 166 VRYLKPSQAAQAIENCDRSF---RAILAEPKNKASESSEQDYYSNMRQ 210
Score = 126 (49.4 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ R+F+ YT E LRE FS FG++ ++ +V DK TK SKGIA+V +A A RA+
Sbjct: 25 NSRIFLVISKYTP-ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAM 83
Query: 358 E 358
E
Sbjct: 84 E 84
Score = 98 (39.6 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 33/101 (32%), Positives = 47/101 (46%)
Query: 286 SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
S K E RLF+ P+ D L + F +FGN+ EV++V K + Y
Sbjct: 379 SCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYA 432
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHVMPARH-KKSSDKQE 385
YA SA+ AI L I G L VM A ++ S+K++
Sbjct: 433 KYADRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQ 473
Score = 77 (32.2 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+RI V +PK TE+ LR+ F G+I +++ K G+S+ ++ + +A +AI+
Sbjct: 121 TRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
Query: 60 YFNKSY 65
++S+
Sbjct: 180 NCDRSF 185
Score = 74 (31.1 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
SRI + + KY E LR+ FS G+I D ++R K K S+ AF+ F +A A++
Sbjct: 26 SRIFLV-ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAME 84
Query: 60 YFNKSYL---DTCRISCEIAR 77
+ L DT I IA+
Sbjct: 85 EMHGQCLGPNDTKPIKVFIAQ 105
Score = 59 (25.8 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRY 555
+F+V N P+ L +F +FG+L +V L S K + + + + A A L K
Sbjct: 394 LFIVFN-PHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAIATLHGKIL 452
Query: 556 KGVPLYLEWAPS 567
GV L + A S
Sbjct: 453 NGVRLKVMLADS 464
Score = 54 (24.1 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703
++ +L +GKNV G+ ++ +A + L G IL+G L + L + ++E
Sbjct: 419 IEVYLVSGKNV----GYAKYADRISANDAIATLHGKILNGVRLKVMLADSPREE 468
Score = 43 (20.2 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 502 LPYDSSEGELAKMFGKFGSLD------KVILPSTKTLALVVFLEPVEAAAAFK 548
+P +E +L + F +G ++ + +K L V +L+P +AA A +
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 173 (66.0 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V ++ Y ATED+LR FS G V+ VHI+ D +T RSKG YV E A AIE L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 361 DNSIFQGRLLHVMPARHKKSSDK 383
D ++ + R++ V AR +K + +
Sbjct: 65 DGALLRNRVITVSVARPQKQATR 87
Score = 96 (38.9 bits), Expect = 0.00083, P = 0.00083
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 13 TEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71
TED LR FS G +T ++ + G+S+ ++ TE+EA+EAI+ + + L I
Sbjct: 15 TEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVI 74
Query: 72 SCEIARKVGDPNMPRP 87
+ +AR P P
Sbjct: 75 TVSVARPQKQATRPAP 90
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 173 (66.0 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V ++ Y ATED+LR FS G V+ VHI+ D +T RSKG YV E A AIE L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 361 DNSIFQGRLLHVMPARHKKSSDK 383
D ++ + R++ V AR +K + +
Sbjct: 65 DGALLRNRVITVSVARPQKQATR 87
Score = 96 (38.9 bits), Expect = 0.00083, P = 0.00083
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 13 TEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71
TED LR FS G +T ++ + G+S+ ++ TE+EA+EAI+ + + L I
Sbjct: 15 TEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVI 74
Query: 72 SCEIARKVGDPNMPRP 87
+ +AR P P
Sbjct: 75 TVSVARPQKQATRPAP 90
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 136 (52.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 65/277 (23%), Positives = 117/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K + ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G+ + +K +
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 275 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 133 (51.9 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V +P + F ++Y++++ +E +S G +
Sbjct: 216 KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV----- 270
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 271 -ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 324
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L++G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 325 VM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 129 (50.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 116 (45.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DENL++ F + G+ LSVKV + +GK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF---GKTLSVKVMRD-PSGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 114 (45.2 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 111 (44.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 248 VEEMNGKEISGKVIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 98 (39.6 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-SLRKSGVGN 100
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 131 (51.2 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 69/276 (25%), Positives = 110/276 (39%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL L + FS FGN+ +V D D SKG +V Y ESA +AI
Sbjct: 98 GNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIA 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + G+ + V P KSS ++ Q T+ +K SE G +
Sbjct: 157 KVNGMMINGQKVFVGPF---KSSKER------GQPTE-VKFTNVFFKNLSEDVGPDQLKE 206
Query: 419 SLFMRPD-TVVENIARKHGVSKS-DLLDREANDLAVRIALGETQVIAETKKALTNAGVNV 476
L + T + +A G SK + E+ + A + E I K AG
Sbjct: 207 LLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIY--AGRAQ 264
Query: 477 SSLE-EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL------PST 529
+E E T K +KN+ +L ++F +FG++ I+ ++
Sbjct: 265 KKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTS 324
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
K V + P EA A + + PLY+ A
Sbjct: 325 KGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALA 360
Score = 128 (50.1 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 28/96 (29%), Positives = 52/96 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++N+ + D+LRE FS+FG ++ ++ D SKG +V Y P+ A+RA+ +
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKT 396
+ + + L+V A+ +K + +L Q KT
Sbjct: 346 NGRMIGTKPLYVALAQ-RKDIRRAQLEMQHQQKFKT 380
Score = 117 (46.2 bits), Expect = 5.5e-12, Sum P(3) = 5.5e-12
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 275 NGEIVDPGNPSSSSKDVQQEV-LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
NG+ V G P SSK+ Q ++ +F +NL D+L+E ++G ++ + I+ D
Sbjct: 164 NGQKVFVG-PFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD 222
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS 389
D +SKG + + E+A +E + IF G+ ++ A+ KK + EL ++
Sbjct: 223 -DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQ-KKIEREAELKHT 276
Score = 114 (45.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V +L +E L E F++ G VS + + D +T+RS AYV Y A RA+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ L+N+ +G+ +M ++ S K + N
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGN 99
Score = 97 (39.2 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + KNL + V D+L++ Q GEIT+ +M GKS+ F F F + + A+ ++
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVEN 247
Query: 61 FN 62
N
Sbjct: 248 EN 249
Score = 96 (38.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
P V+ ++F KNL+ + L++ ++ G I ++ + + + K S GFGF F
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQY---GEITNITI---MADDKGKSKGFGFANF 235
Query: 670 DSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKA--EKDKSSTKLLVRNV 723
+S E A NV + G I G + K + + K E L ++N+
Sbjct: 236 ESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNI 291
Score = 92 (37.4 bits), Expect = 5.5e-12, Sum P(3) = 5.5e-12
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQ-FAFIGFRTEQEAEEAIKYF 61
+ +KNL K + L D FS G I K++ T DG S + F F+ + T++ A++AI
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVV-TDDGNSSKGFGFVHYETQESADKAIAKV 158
Query: 62 N 62
N
Sbjct: 159 N 159
Score = 80 (33.2 bits), Expect = 5.5e-12, Sum P(3) = 5.5e-12
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+L++KN++ ++ LR+ F + G I S V K K S GFGF+ + + + AT
Sbjct: 285 NLYIKNIDDSIDNDKLREVFSQF---GTITSAIVMKDDK--ATTSKGFGFVCYTAPDEAT 339
Query: 677 NVCRDLQGTILDGHALILQLCHAK 700
++ G ++ L + L K
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQRK 363
Score = 79 (32.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 617 SLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
++F+KNL+ K D L F G ILS KV + + N S GFGF+ +++ E+A
Sbjct: 99 NVFIKNLD-KGIDHKALYDTFSAF---GNILSCKV---VTDDGNSSKGFGFVHYETQESA 151
Query: 676 TNVCRDLQGTILDGHALIL 694
+ G +++G + +
Sbjct: 152 DKAIAKVNGMMINGQKVFV 170
Score = 75 (31.5 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIK 59
S + V +L V+E L + F+Q G +++ ++ R T +S +A++ + +AE A+
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 60 YFNKSYL--DTCRI 71
N + + CRI
Sbjct: 70 TLNNTPIRGKACRI 83
>UNIPROTKB|Q5ZL80 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380
GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
OrthoDB:EOG4RBQJN InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AADN02063494 EMBL:AADN02063495 EMBL:AADN02063496
EMBL:AJ719854 IPI:IPI00594541 RefSeq:NP_001026103.1
UniGene:Gga.13144 SMR:Q5ZL80 STRING:Q5ZL80
Ensembl:ENSGALT00000000510 GeneID:420054 KEGG:gga:420054
InParanoid:Q5ZL80 NextBio:20823019 Uniprot:Q5ZL80
Length = 709
Score = 108 (43.1 bits), Expect = 5.9e-12, Sum P(3) = 5.9e-12
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 283 NPSSSSKDVQQEVLESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
NP+ ++ + L++GRL FV NL Y +L+E FS G V I+ DKD K
Sbjct: 192 NPNIPNEIIH--ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGK- 248
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
S+GI V + E A A++ + S+F G+LL P H K ++
Sbjct: 249 SRGIGTVTF---EQAIEAVQAI--SMFNGQLLFDRPM-HVKMDER 287
Score = 99 (39.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 633 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVRFESPEVAERACRM 690
Query: 360 LDNSIFQGRLLHV 372
++ +GR + V
Sbjct: 691 MNGIQLRGREIDV 703
Score = 98 (39.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 210 STVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISM 269
Query: 61 FNKSYL 66
FN L
Sbjct: 270 FNGQLL 275
Score = 96 (38.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 77 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 135
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 136 VLNKHSLGGRPLKV 149
Score = 93 (37.8 bits), Expect = 5.9e-12, Sum P(3) = 5.9e-12
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 77 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 136
Query: 61 FNKSYL 66
NK L
Sbjct: 137 LNKHSL 142
Score = 92 (37.4 bits), Expect = 5.9e-12, Sum P(3) = 5.9e-12
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G + F+S E A
Sbjct: 634 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVRFESPEVAER 686
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 687 ACRMMNGIQLRGREIDVRI 705
Score = 44 (20.5 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 620 TGGPAAGVARKACQIFVRNLPFDFTWKMLKDKFNECG 656
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 105 (42.0 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 283 NPSSSSKDVQQEVLESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
NP+ ++ + L++GRL FV NL Y +L+E FS G V I+ DKD K
Sbjct: 185 NPNIPNEIIH--ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK- 241
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
S+GI V + E + A++ + S+F G+LL P H K ++
Sbjct: 242 SRGIGIVTF---EQSIEAVQAI--SMFNGQLLFDRPM-HVKMDER 280
Score = 100 (40.3 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 203 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISM 262
Query: 61 FNKSYL 66
FN L
Sbjct: 263 FNGQLL 268
Score = 99 (39.9 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 710
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 711 MNGMKLSGREIDV 723
Score = 98 (39.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 129
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 130 VLNKHSLSGRPLKV 143
Score = 95 (38.5 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 706
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 707 ACRMMNGMKLSGREIDVRI 725
Score = 93 (37.8 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 61 FNKSYL 66
NK L
Sbjct: 131 LNKHSL 136
Score = 45 (20.9 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 640 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 676
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 120 (47.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 36/110 (32%), Positives = 49/110 (44%)
Query: 290 DVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAI 349
DV ++ + L V LP T+DELR FS G V ++ DK S G +V Y
Sbjct: 11 DVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN 70
Query: 350 PESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+ A RAI L+ Q + + V AR + K L+ S T T K
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQK 120
Score = 117 (46.2 bits), Expect = 7.1e-12, Sum P(3) = 7.1e-12
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I AR
Sbjct: 80 TLNGLRLQSKTIKVSFAR 97
Score = 99 (39.9 bits), Expect = 7.1e-12, Sum P(3) = 7.1e-12
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
E ++ L++ LP T T+ ++ + F FG++ ++VD+ T S+G+A++ + A
Sbjct: 101 ETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 91 (37.1 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S SS +V +F+ NL A E L + F FG V+ V ++ D +T + KG +
Sbjct: 230 SISSVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHV 372
V E A+ AI L+ + L V
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Score = 77 (32.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 52/225 (23%), Positives = 92/225 (40%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
F+ ++ +K +N + LP ++ ++ MF FG + +V++ L+ V F+
Sbjct: 95 FARPSSETIKDAN--LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFI 152
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA A+F G +K P+ +++A P+ +LSQ S +
Sbjct: 153 RFDKRSEAEEAIASFNG--HKPPGSSEPITVKFAANPNQSKNMALLSQICHSPARRFGGP 210
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + ++ ++ +F+ NL + DE L + FG
Sbjct: 211 V--HHQAQRFRFSPMGVDHMSSISSVNVASSASSGWCIFIYNLG-QDADEGILWQMFGPF 267
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 268 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 61 (26.5 bits), Expect = 7.1e-12, Sum P(3) = 7.1e-12
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S+ S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSSISSVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 171 (65.3 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 34/99 (34%), Positives = 61/99 (61%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ ++ VRNLP++ +ED L+ FS FG ++EV ++ D+ KRSKG A++ + + A AI
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAI 98
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKT 396
E +D ++ GR++++ A+ K D Q L ++ K+
Sbjct: 99 ETMDRRMYNGRMIYIDIAKPGKR-DFQGLPRTSGPPEKS 136
Score = 107 (42.7 bits), Expect = 0.00033, P = 0.00033
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
S+I V+NLP +ED L+ FS GEI + KL++ + K S+ +AFI F ++ +A AI+
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 60 YFNKSYLDTCRISCEIAR--KVGDPNMPRPWSRYSLKKE-KEVSEDE 103
++ + I +IA+ K +PR E +E + DE
Sbjct: 100 TMDRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPPEKSDEPEEAANDE 146
>ZFIN|ZDB-GENE-030131-6898 [details] [associations]
symbol:hnrnpm "heterogeneous nuclear
ribonucleoprotein M" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024667
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6898 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GeneTree:ENSGT00410000025635
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:BX649327
IPI:IPI01024026 Ensembl:ENSDART00000137689 ArrayExpress:F1R2E0
Bgee:F1R2E0 Uniprot:F1R2E0
Length = 715
Score = 107 (42.7 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 31/112 (27%), Positives = 57/112 (50%)
Query: 268 GVGEEDANGEIVDPGNPSSSSKDVQQEV---LESGRL----FVRNLPYTATEDELREHFS 320
G+G + +V+ ++ ++ EV L++G++ FV NL Y +L+E F
Sbjct: 195 GMGPGPGSSSMVNIPPSLMNNPNIPNEVIHGLQAGKIGSTIFVANLDYKVGWKKLKEVFG 254
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
G V I+ DKD K S+G+ V + +P A +A+ + + + R++HV
Sbjct: 255 MAGMVVRADILEDKDGK-SRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMHV 305
Score = 96 (38.9 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
+ V N+P V L+D +K GE+T + + +GKSR A + FRTE+ ++A++
Sbjct: 50 VFVSNIPYDVKWQTLKDLMKEKVGEVTYVEHLMDGEGKSRGCAVVEFRTEELMKKAVEKV 109
Query: 62 NKSYLD 67
NK ++
Sbjct: 110 NKHVMN 115
Score = 95 (38.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G P S + ++ ++FVRNLP+ T L++ F+ G V I ++ +SKG
Sbjct: 625 GGPGSGGANARKGC----QIFVRNLPFDFTWKMLKDTFNSCGMVQYADIKMENG--KSKG 678
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
V + PE+A RA ++ GR + V
Sbjct: 679 CGVVRFDNPETAERACRTMNGYRLNGREIDV 709
Score = 91 (37.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I V NL V +L++ F G + A ++ KDGKSR + F EA +A+
Sbjct: 233 STIFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSM 292
Query: 61 FNKSYL 66
FN L
Sbjct: 293 FNGQLL 298
Score = 89 (36.4 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F G + +K ++NGK S G G + FD+ ETA
Sbjct: 640 IFVRNLPFDFTWKMLKDTFNSC---GMVQYADIK--MENGK--SKGCGVVRFDNPETAER 692
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L+G + +++
Sbjct: 693 ACRTMNGYRLNGREIDVRI 711
Score = 86 (35.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 301 LFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+FV N+PY L++ K G V+ V ++D + K S+G A V + E +A+E
Sbjct: 50 VFVSNIPYDVKWQTLKDLMKEKVGEVTYVEHLMDGEGK-SRGCAVVEFRTEELMKKAVEK 108
Query: 360 LDNSIFQGRLLHV 372
++ + GR L V
Sbjct: 109 VNKHVMNGRPLKV 121
Score = 76 (31.8 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS-VETA 675
++FV NL++K + L++ FG G ++ + + K+GK S G G + FD +E
Sbjct: 234 TIFVANLDYKVGWKKLKEVFG---MAGMVVRADILED-KDGK--SRGMGTVTFDMPIEAV 287
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAE 710
V ++ +G L ++ H K DE+ + K +
Sbjct: 288 QAV------SMFNGQLLFNRVMHVKLDEKSLPKGD 316
Score = 39 (18.8 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD----KVILPSTKTLALVVFLEPVEAAAA 546
++ +F V+NLP+D + L F G + K+ +K +V F P A A
Sbjct: 635 RKGCQIF-VRNLPFDFTWKMLKDTFNSCGMVQYADIKMENGKSKGCGVVRFDNPETAERA 693
Query: 547 FKGLAYKRYKG 557
+ + R G
Sbjct: 694 CRTMNGYRLNG 704
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 125 (49.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 37/110 (33%), Positives = 49/110 (44%)
Query: 290 DVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAI 349
DV ++ + L V LP T+DELR FS G V ++ DK S G +V Y
Sbjct: 11 DVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN 70
Query: 350 PESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
+ A RAI L+ Q + + V AR S K L+ S T T K
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQK 120
Score = 120 (47.3 bits), Expect = 8.2e-12, Sum P(3) = 8.2e-12
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ + ++AE AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 60 YFNKSYLDTCRISCEIAR 77
N L + I +AR
Sbjct: 80 TLNGLRLQSKTIKVSVAR 97
Score = 96 (38.9 bits), Expect = 8.2e-12, Sum P(3) = 8.2e-12
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
E ++ L++ LP T T+ ++ + F FG + ++VD+ T S+G+A++ + A
Sbjct: 101 ESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEA 160
Query: 354 SRAI 357
AI
Sbjct: 161 EEAI 164
Score = 87 (35.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +V +F+ NL A E L + F FG V+ V ++ D +T + KG +
Sbjct: 230 SISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHV 372
V E A+ AI L+ + L V
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Score = 74 (31.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 51/220 (23%), Positives = 90/220 (40%)
Query: 487 TDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL----- 538
++ +K +N + LP ++ ++ MF FG + +V++ L+ V F+
Sbjct: 100 SESIKDAN--LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKR 157
Query: 539 -EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDAVVGEH 589
E EA A+F G +K P+ +++A P+ +LSQ S + V H
Sbjct: 158 SEAEEAIASFNG--HKPPGSSEPITVKFAANPNQNKNMALLSQLCHSPARRFGGPV--HH 213
Query: 590 DAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGR 644
A+R + ++ ++ +F+ NL + DE L + FG G
Sbjct: 214 QAQRFRFSPMGVDHMSSISGVNVASSASSGWCIFIYNLG-QDADEGILWQMFGPF---GA 269
Query: 645 ILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
+ +VKV + K GFGF+ + E A L G
Sbjct: 270 VTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 307
Score = 60 (26.2 bits), Expect = 8.2e-12, Sum P(3) = 8.2e-12
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S S + NL D+ EG L +MFG FG++ V
Sbjct: 223 MGVDHMSSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 104 (41.7 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 283 NPSSSSKDVQQEVLESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
NP+ ++ + L++GRL FV NL Y +L+E FS G V I+ DKD K
Sbjct: 186 NPNIPNEIIH--ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK- 242
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
S+GI V + E + A++ + S+F G+LL P H K ++
Sbjct: 243 SRGIGTVTF---EQSIEAVQAI--SMFNGQLLFDRPM-HVKMDER 281
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 711
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 712 MNGMKLSGREIDV 724
Score = 98 (39.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 204 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 263
Query: 61 FNKSYL 66
FN L
Sbjct: 264 FNGQLL 269
Score = 98 (39.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 130
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 131 VLNKHSLSGRPLKV 144
Score = 95 (38.5 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 707
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 708 ACRMMNGMKLSGREIDVRI 726
Score = 93 (37.8 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 61 FNKSYL 66
NK L
Sbjct: 132 LNKHSL 137
Score = 45 (20.9 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 641 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 677
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 104 (41.7 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 283 NPSSSSKDVQQEVLESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
NP+ ++ + L++GRL FV NL Y +L+E FS G V I+ DKD K
Sbjct: 186 NPNIPNEIIH--ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK- 242
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
S+GI V + E + A++ + S+F G+LL P H K ++
Sbjct: 243 SRGIGTVTF---EQSIEAVQAI--SMFNGQLLFDRPM-HVKMDER 281
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 711
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 712 MNGMKLSGREIDV 724
Score = 98 (39.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 204 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 263
Query: 61 FNKSYL 66
FN L
Sbjct: 264 FNGQLL 269
Score = 98 (39.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 130
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 131 VLNKHSLSGRPLKV 144
Score = 95 (38.5 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 707
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 708 ACRMMNGMKLSGREIDVRI 726
Score = 93 (37.8 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 61 FNKSYL 66
NK L
Sbjct: 132 LNKHSL 137
Score = 45 (20.9 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 641 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 677
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 147 (56.8 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 35/125 (28%), Positives = 58/125 (46%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELR 316
+ KD G G E+ + N SS ++ + R LFV L + TE ELR
Sbjct: 14 EDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELR 73
Query: 317 EHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA- 375
+HF K+G + +++ D T RS+G A++++ E+ + + D I + + A
Sbjct: 74 DHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSAADEHIINSKKVDPKKAK 132
Query: 376 -RHKK 379
RH K
Sbjct: 133 ARHGK 137
Score = 98 (39.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
+S D ++ G++FV L +++E++ +F +FGN+ EV + DK + KG +
Sbjct: 122 NSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCF 181
Query: 345 VLY 347
+ +
Sbjct: 182 ITF 184
Score = 88 (36.0 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 603 VTDADIDPDRVESR--SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNV 660
+ +DP + ++R +FV L + DE ++ +FG+ G I V+V+ K+
Sbjct: 121 INSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQF---GNI--VEVEMPFDKQKSQ 175
Query: 661 SMGFGFIEFDSVETATNVCR 680
GF FI FDS + T++ +
Sbjct: 176 RKGFCFITFDSEQVVTDLLK 195
Score = 78 (32.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRT-KDGKSRQFAFIGFRTEQEAEEAIKY 60
++ V L TE LRD F + GEI + + G+SR FAFI F T EA + +
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF-TNTEAIDKVSA 115
Query: 61 FNKSYLDTCRISCEIAR 77
++ +++ ++ + A+
Sbjct: 116 ADEHIINSKKVDPKKAK 132
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 131 (51.2 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 42/181 (23%), Positives = 85/181 (46%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV LP +A ++L E FS+ G V + +V +K +K +G YV +++ E RA++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 361 DNSIFQGRLLHVMPARHK-KSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNS 419
+ F+G ++V A+ K ++ K++ N S+ K K+ K ++ N
Sbjct: 66 --TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPK--KEPKAKKAKVADKKARLIIRNL 121
Query: 420 LFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSL 479
F + ++ + + G + R+ + + + + E KAL G+N+ +
Sbjct: 122 SFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALK--GMNMKEI 179
Query: 480 E 480
+
Sbjct: 180 K 180
Score = 125 (49.1 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 35/126 (27%), Positives = 62/126 (49%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ ++NL +ED L+ F+Q G + + + R DGK R F F+ F+ EA +A+K
Sbjct: 114 ARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKG 173
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
N + ++ + A V S ++ +EK S + K+ K+G ++ +
Sbjct: 174 MNMKEIKGRTVAVDWA--VAKDKYKDTQSVSAIGEEK--SHESKHQESVKKKGREEEDME 229
Query: 121 VTENDD 126
ENDD
Sbjct: 230 EEENDD 235
Score = 122 (48.0 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 54/228 (23%), Positives = 91/228 (39%)
Query: 267 SGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVS 326
S E+ + V N + + +V E +F+RNL + + E+EL E +FG +
Sbjct: 305 SDTSTEEQEDKAVQVSN--KKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELK 362
Query: 327 EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQEL 386
V IV+ DT+ SKG A+ + E+A + + G L + R K +L
Sbjct: 363 YVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLK--LDGRQLKV----DL 416
Query: 387 HNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDRE 446
+ + K K + +G T+ N R + GVS +D+ RE
Sbjct: 417 AVTRDEAAKL------QTTKVKKPTG-TR--NLYLAREGLIRAGTKAAEGVSAADMAKRE 467
Query: 447 ANDLAVRIALGETQV-IAETKKALTNA--GVNVSSLEEFSAGKTDGLK 491
+L L + + ++ T+ L N V+ L + T G K
Sbjct: 468 RFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEK 515
Score = 120 (47.3 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 54/243 (22%), Positives = 111/243 (45%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
+++NL + SE +L +F +FG++ +V +P + V F +EA A KG+
Sbjct: 117 IIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNM 176
Query: 553 KRYKGVPLYLEWAPS-DVL--SQSSTSKGNQKN-DAVVGEHDAKRALLEQQLEGVTDADI 608
K KG + ++WA + D +QS ++ G +K+ ++ E K+ E+ +E + D
Sbjct: 177 KEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDD 236
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
D D E +F +EN+ + ++ + +VK K+ + E
Sbjct: 237 DDDDDEEDGVFDDE---DEEEENIESKVTKPVQIQK-RAVKRPAPAKSSDHSEEDSDLEE 292
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTK-LLVRNVAFEA 727
DS++ + + T + +Q+ + KK +K D + K + +RN++F++
Sbjct: 293 SDSIDDGEELAQSDTSTE-EQEDKAVQVSNKKK-----RKLPSDVNEGKTVFIRNLSFDS 346
Query: 728 QRK 730
+ +
Sbjct: 347 EEE 349
Score = 104 (41.7 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 284 PSSSSKDVQQEVLES-GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
P K + +V + RL +RNL + +ED+L+ F++FG V EV+I D K +G
Sbjct: 98 PKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKM-RGF 156
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK-KSSDKQEL 386
+V + A +A++ ++ +GR + V A K K D Q +
Sbjct: 157 GFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSV 201
Score = 91 (37.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
L ++NL+FK +++L+ F + G +L V + + +GK GFGF++F ++ A
Sbjct: 116 LIIRNLSFKCSEDDLKTVFAQF---GAVLEVNIPRK-PDGK--MRGFGFVQFKNLLEAGK 169
Query: 678 VCRDLQGTILDGHALILQLCHAK---KDEQVVKKAEKDKS 714
+ + + G + + AK KD Q V ++KS
Sbjct: 170 ALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS 209
Score = 81 (33.6 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS-RQFAFIGFRTEQEAEEAIKYFNK 63
V LP ++L + FSQ G + ++ K K+ R F ++ F ++ + A+K
Sbjct: 8 VGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT 67
Query: 64 SYLDTCRISCEIARK 78
+ C+I+ +A+K
Sbjct: 68 --FEGCKINVTVAKK 80
Score = 79 (32.9 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 33/120 (27%), Positives = 55/120 (45%)
Query: 435 HGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSL-EEFSAGKTDGLKRS 493
H SDL + ++ D +A +T + KA+ + L + + GKT
Sbjct: 283 HSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKT------ 336
Query: 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL-PSTKTLALVVFLEPVEAAAAFKGL 550
VF ++NL +DS E EL ++ +FG L +++L P T+ F + + AA K L
Sbjct: 337 --VF-IRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 393
Score = 77 (32.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 41/154 (26%), Positives = 68/154 (44%)
Query: 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCD 629
L+QS TS Q++ AV + KR L +D++ E +++F++NL+F + +
Sbjct: 302 LAQSDTSTEEQEDKAVQVSNKKKRKL---------PSDVN----EGKTVFIRNLSFDSEE 348
Query: 630 ENLRKHFGEHIKE-GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVC------RDL 682
E L GE +++ G + V++ H S G F +F + E A +
Sbjct: 349 EEL----GELLQQFGELKYVRIVLHPDTEH--SKGCAFAQFMTQEAAQKCLLAASPENEA 402
Query: 683 QGTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
G LDG L + L +DE + K K T
Sbjct: 403 GGLKLDGRQLKVDLA-VTRDEAAKLQTTKVKKPT 435
Score = 57 (25.1 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 34/113 (30%), Positives = 46/113 (40%)
Query: 578 GNQKNDAVVGEHDAKRALLEQ-QLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHF 636
G + + V AKR E + + + D +I R L + NL D+ LRK
Sbjct: 451 GTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTR---LCLHNLPKAVDDKQLRKLL 507
Query: 637 -----GEHIKEGRILSVKVKKHLK----NGKNVSMGFGFIEFDSVETATNVCR 680
GE K RI +V + LK N K S+G+ F EF E A R
Sbjct: 508 LSATSGE--KGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALR 558
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 128 (50.1 bits), Expect = 9.9e-12, Sum P(3) = 9.9e-12
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
+PS+SS E +LFV NLPY +L++ F + G+V I ++++ RS+GI
Sbjct: 165 SPSASSNGKDSE--PDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEG-RSRGI 221
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR--HKKS 380
V+ + + A AI++L N+ F GR L V R H KS
Sbjct: 222 GIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKS 261
Score = 116 (45.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 280 DPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
DP + + K QQE R++V NL Y EL+E + GNV I+ + S
Sbjct: 63 DP-HLGNGQKYTQQE----RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLS 116
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380
KG A + Y+ E A AI+ L N F GRL+++ R + +
Sbjct: 117 KGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNA 157
Score = 88 (36.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V NLP+ ++ L + F+ G+V I + T RSKG V + A+ +IE L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 361 DNSIFQGRLLHVMPARH 377
+ + GR L + A +
Sbjct: 371 NGYRYGGRPLQLSYAHY 387
Score = 83 (34.3 bits), Expect = 9.9e-12, Sum P(3) = 9.9e-12
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
R+ V NL V L++F Q G + + +++ +G S+ A I + T +EA AIK
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 62 -NKSYL 66
N+ ++
Sbjct: 138 SNQKFM 143
Score = 71 (30.1 bits), Expect = 9.9e-12, Sum P(3) = 9.9e-12
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVIL---PS--TKTLALVVFLEPVEAAAAFKGLAYK 553
V NLP+ +S+ L +F GS+ + + P+ +K +V F +AA++ + L
Sbjct: 314 VGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGY 373
Query: 554 RYKGVPLYLEWA 565
RY G PL L +A
Sbjct: 374 RYGGRPLQLSYA 385
Score = 71 (30.1 bits), Expect = 9.9e-12, Sum P(3) = 9.9e-12
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S ++V NL + T D NL F + G ++ ++ + G+ S GFG ++F++
Sbjct: 309 SDCIYVGNLPWATSDRNLLDLFTDI---GSVIRARIA-YEPTGR--SKGFGVVQFENEND 362
Query: 675 ATNVCRDLQGTILDGHALILQLCH 698
A + L G G L L H
Sbjct: 363 AASSIEKLNGYRYGGRPLQLSYAH 386
Score = 61 (26.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 607 DIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666
D +PDR LFV NL + ++L+ F + G ++ ++ + + G+ S G G
Sbjct: 174 DSEPDR----QLFVGNLPYNVRWQDLKDLFRQ---AGSVIRADIQMN-QEGR--SRGIGI 223
Query: 667 IEFDSVETATNVCRDLQGTILDGHALILQL 696
+ S++ A + + L T G L ++L
Sbjct: 224 VVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 253
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 135 (52.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV+NL T ++L E F FG ++ ++VD+ K SKG +V + PE A++AI +
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGK-SKGFGFVCFTTPEEATKAITEM 396
Query: 361 DNSIFQGRLLHVMPARHK 378
+ + G+ L+V A+ K
Sbjct: 397 NTRMINGKPLYVALAQRK 414
Score = 126 (49.4 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 75/314 (23%), Positives = 126/314 (40%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLE-SGRLFVRNLPYTATEDELR 316
+S+ K +I S E+ A + S+ + V E S L+V L + E L
Sbjct: 11 ESMEKLNIGSTTEEQSA-AAATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLF 69
Query: 317 EHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
E FS G VS + + D +K+S G AYV Y E +AIE L+ + +GR +M ++
Sbjct: 70 EIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQ 129
Query: 377 HKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVE-NIAR-K 434
S+ + + G +K A N KA + F ++ +A +
Sbjct: 130 RDPSARR------SGDGNIFIKNLH-------PAIDN-KALHDTFSAFGKILSCKVATDE 175
Query: 435 HGVSKS-DLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRS 493
G SK + E + A ++ ++ G ++S + S K + +K +
Sbjct: 176 FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV--GKHISKKDRES--KFEEMKAN 231
Query: 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFK 548
VKN+ + SE K+F FG + + L +K V F + A A +
Sbjct: 232 FTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVE 291
Query: 549 GLAYKRYKGVPLYL 562
L K G +Y+
Sbjct: 292 ELNDKEINGQKIYV 305
Score = 126 (49.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 70/295 (23%), Positives = 121/295 (41%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S +D G +F++NL L + FS FG + + D + +SK +V
Sbjct: 128 SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVH 186
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXK 406
Y E+A AIE ++ + R V +H D++ S+ + K
Sbjct: 187 YETAEAAEAAIENVNGMLLNDR--EVFVGKHISKKDRE------SKFEEMKANFTNIYVK 238
Query: 407 ASEASGNTKAWNSLFMRPDTVVENIARKH--GVSKS-DLLDREANDLAVRIA--LGETQV 461
+ + + +++ LF + K G SK ++ E ++ AV+ L + ++
Sbjct: 239 NIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEI 298
Query: 462 IAETKKALTNAGVNVSSLEE----FSAGKTDGLKRSNHVFL-VKNLPYDSSEGE-LAKMF 515
+ K + A LEE + A + + L + V L VKNL D+ + E L + F
Sbjct: 299 NGQ-KIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLD-DTIDSEKLEEEF 356
Query: 516 GKFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
FG++ KV++ +K V F P EA A + + G PLY+ A
Sbjct: 357 KPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411
Score = 109 (43.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKN+ +E+ FS G+IT L + +DGKS+ F F+ F + A +A++
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
N ++ +I A+K + LKK+ E EK LA +G ++
Sbjct: 293 LNDKEINGQKIYVGRAQKKRE-------RLEELKKQYEAVRLEK---LAKYQGVNLFVKN 342
Query: 121 VTENDDPQLLE 131
+ + D + LE
Sbjct: 343 LDDTIDSEKLE 353
Score = 103 (41.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 586 VGEHDAKRALLEQ---QLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKE 642
VG KR LE+ Q E V + + + +LFVKNL+ E L + F
Sbjct: 305 VGRAQKKRERLEELKKQYEAVRLEKLA--KYQGVNLFVKNLDDTIDSEKLEEEFKPF--- 359
Query: 643 GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD 702
G I S KV + GK S GFGF+ F + E AT ++ +++G L + L +KD
Sbjct: 360 GTITSAKVMVD-EAGK--SKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQ-RKD 415
Query: 703 EQVVKKAEKDKSSTKLLVRNVA 724
+ + ++ ++ ++ ++N A
Sbjct: 416 VRRSQLEQQIQARNQMRMQNAA 437
Score = 100 (40.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 26/96 (27%), Positives = 52/96 (54%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKN++ +E+ K F G+I S+ ++K ++GK S GFGF+ F+ E+A
Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPF---GKITSIYLEKD-QDGK--SKGFGFVNFEDHESAV 287
Query: 677 NVCRDLQGTILDGHALILQLCHAKKD--EQVVKKAE 710
+L ++G + + K++ E++ K+ E
Sbjct: 288 KAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYE 323
Score = 92 (37.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G+I K+ + G+S+ F F+ + T + AE AI+ N
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 63 KSYLD 67
L+
Sbjct: 202 GMLLN 206
Score = 74 (31.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V L V E L + FS G+++ ++ R KS +A++ + ++ E+AI+ N
Sbjct: 56 VGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNY 115
Query: 64 SYLD--TCRISCE----IARKVGDPNM 84
+ ++ CRI AR+ GD N+
Sbjct: 116 NPIEGRPCRIMWSQRDPSARRSGDGNI 142
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 137 (53.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 69/278 (24%), Positives = 117/278 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ E+ + T +K K
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKY 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L +R T ++ G VS + + R +++ + G+ + +K G
Sbjct: 215 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK----G 270
Query: 474 VNVSSLE-EFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS- 528
+ L+ +F K D + R V L VKNL + L K F FG++ KV++
Sbjct: 271 ERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 529 -TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGLDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K ++++ H TSQ
Sbjct: 354 NGRIVATKPLYVALAQRK---EERQAH-LTSQ 381
Score = 114 (45.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +GR + +M ++ S K + N
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGN 100
Score = 113 (44.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 55/223 (24%), Positives = 95/223 (42%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T + AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + M + ++ +K E +DEK + K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALS 219
Query: 118 IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSIT 177
I +T+ D + F V R + A D + G + K + +A K GE+
Sbjct: 220 IRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVY---VGRAQKKGERQTE 275
Query: 178 LHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDW 220
L K ++ D + N L +D R++K++
Sbjct: 276 LKRKFEQMK--QDRMTRYQGVNLYVKNLDDGLD--DERLRKEF 314
Score = 109 (43.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N +++L+E F K+G + ++ D D+ +SKG +V + E A RA
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKEMNGKQVYVGRAQ-KKGERQTELKRKFEQ 282
Score = 98 (39.6 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 18/81 (22%), Positives = 43/81 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + +++L++ F + G ++M GKS+ F F+ F ++A+ A+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDE 250
Query: 61 FNKSYLDTCRISCEIARKVGD 81
N ++ ++ A+K G+
Sbjct: 251 MNGKEMNGKQVYVGRAQKKGE 271
Score = 93 (37.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L++ F K G LS++V +GK S GF
Sbjct: 180 EAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF---CKYGPALSIRVMTD-DSGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G ++G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTR 290
Score = 89 (36.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETHEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMN 73
Score = 51 (23.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDP-SLRKSGVGN 100
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 169 (64.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 74/279 (26%), Positives = 118/279 (42%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+G +F++NL + L + FS FGN+ + VD + +SKG +V YA ESA +AI
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAW 417
E L+ + + ++V P ++ D ST+ TK +E++ +
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERD------STANKTKFTN---VYVKNLAESTTDDDLK 232
Query: 418 NSLFMRPDTVVENIARKHGVSKSD---LLDREANDLAVRIALGETQVIAETKKALTNAGV 474
N+ F + + K G KS ++ E D A R + K+
Sbjct: 233 NA-FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 291
Query: 475 NVSSLE-EFSAGKTDGLKRSNHVF-----LVKNLPYDSSEGELAKMFGKFGSL--DKVIL 526
S E E LK + F VKNL S+ +L ++F FG++ KV+
Sbjct: 292 KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMR 351
Query: 527 -PS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562
P+ +K V F P EA A L+ K + PLY+
Sbjct: 352 DPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 125 (49.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+S L+V+NL + ++++L+E FS FG V+ ++ D + SKG +V +A PE A+ A
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGT-SKGSGFVAFATPEEATEA 374
Query: 357 IEVLDNSIFQGRLLHVMPARHKK 379
+ L + + + L+V A+ K+
Sbjct: 375 MSQLSGKMIESKPLYVAIAQRKE 397
Score = 125 (49.1 bits), Expect = 0.00030, P = 0.00030
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + VKNL +++++L++ FS G +T +K+MR +G S+ F+ F T +EA EA+
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 61 FNKSYLDTCRISCEIARKVGD 81
+ +++ + IA++ D
Sbjct: 378 LSGKMIESKPLYVAIAQRKED 398
Score = 122 (48.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 36/128 (28%), Positives = 62/128 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+ D ++ + +++VKNL T D++L+ FGE+ G+I S V +K+G+ S GF
Sbjct: 204 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEY---GKITSAVV---MKDGEGKSKGF 257
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD---------EQVVKKAEKDKSS 715
GF+ F++ + A L G D + K + EQ +K+A S
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS 317
Query: 716 TKLLVRNV 723
+ L V+N+
Sbjct: 318 SNLYVKNL 325
Score = 119 (46.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKNL + T+D L++ F + G+IT A +M+ +GKS+ F F+ F +A A++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 61 FNKSYLD 67
N D
Sbjct: 275 LNGHKFD 281
Score = 119 (46.9 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D+ +S +L+VKNL+ DE L++ F G + S KV + NG S G GF+ F
Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPF---GTVTSSKVMRD-PNG--TSKGSGFVAFA 366
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAE 710
+ E AT L G +++ L + + K+D +V +A+
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQ 406
Score = 112 (44.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L + T+ +L + F + G V V + D T+RS G YV + P+ A+RAI+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 361 DNSIFQGRLLHVMPARHKKSS 381
+ G+ + VM + H+ S
Sbjct: 98 NYIPLYGKPIRVMYS-HRDPS 117
Score = 95 (38.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + + L D FS G I K+ G+S+ + F+ + E+ A++AI+ N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 63 KSYLD 67
L+
Sbjct: 186 GMLLN 190
Score = 77 (32.2 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 609 DPD--RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666
DP R + ++F+KNL+ + L F G I+S KV +G+ S G+GF
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSF---GNIVSCKVAVD-SSGQ--SKGYGF 168
Query: 667 IEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVA 724
+++ + E+A L G +L+ + + +++ A K K T + V+N+A
Sbjct: 169 VQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD--STANKTKF-TNVYVKNLA 223
Score = 69 (29.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 25/101 (24%), Positives = 43/101 (42%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V +L VT+ +L D F Q G + ++ R +S + ++ F Q+A AI+ N
Sbjct: 40 VGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN- 98
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEK 104
Y+ + DP++ R + K + S D K
Sbjct: 99 -YIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHK 138
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 33/130 (25%), Positives = 58/130 (44%)
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMF 515
+ + Q+ +T T A V+S S G T + N V +L ++ ++ +L F
Sbjct: 1 MAQVQLQGQTPNGSTAA---VTSAPATSGGAT-ATQFGNTSLYVGDLDFNVTDSQLFDAF 56
Query: 516 GKFGSLDKVI----LPSTKTLAL--VVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569
G+ G++ V L + ++L V F P +AA A + L Y G P+ + ++ D
Sbjct: 57 GQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDP 116
Query: 570 LSQSSTSKGN 579
S + GN
Sbjct: 117 -SVRRSGAGN 125
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 137 (53.3 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 65/277 (23%), Positives = 117/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K + ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G+ + +K +
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 275 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 130 (50.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 46/175 (26%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V +P + F ++Y++++ +E ++ G +
Sbjct: 216 KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV----- 270
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 271 -ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 324
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L++G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 325 VM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 129 (50.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 115 (45.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DENL++ F + G+ LSVKV + +GK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF---GKTLSVKVMRD-PSGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 114 (45.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 112 (44.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 110 (43.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 248 VEEMNGKEITGKVIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 98 (39.6 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 102 (41.0 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYF 61
I + +L +++ E L FSQ GE+ K++R K G+S ++ F+ F T AE+ ++ +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 62 N 62
N
Sbjct: 146 N 146
Score = 92 (37.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 301 LFVRNLPYTATEDELREHF-SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+FV +L T+ LR+ F S++ ++ +VVD +T SKG +V + SRA+
Sbjct: 179 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE 238
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQE 385
++ R + + A KK S ++
Sbjct: 239 MNGVYCSSRAMRIGVATPKKPSAHEQ 264
Score = 88 (36.0 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 31/126 (24%), Positives = 52/126 (41%)
Query: 465 TKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ +A+ +G S+ ++DG SN V L + ++ EL + F +FG + V
Sbjct: 266 SSQAVILSGGYASNGAATHGSQSDG-DSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSV 324
Query: 525 ILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDA 584
+P+ K V F + A A + L+ + L W S Q T G+Q N
Sbjct: 325 KIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGG 384
Query: 585 VVGEHD 590
G +
Sbjct: 385 YNGRQN 390
Score = 85 (35.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV L T++ELR+ F++FG V V I KG +V ++ SA AI+ L
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA------GKGCGFVQFSDRSSAQEAIQKL 350
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+I + + + R ++KQ +S SQ
Sbjct: 351 SGAIIGKQAVRLSWGR--SPANKQMRTDSGSQ 380
Score = 81 (33.6 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FV L+ + DE LR+ F + G ++SVK+ GK G GF++F +A
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQF---GEVVSVKIPA----GK----GCGFVQFSDRSSAQ 344
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQV 705
+ L G I+ A+ L + ++Q+
Sbjct: 345 EAIQKLSGAIIGKQAVRLSWGRSPANKQM 373
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 171 (65.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 43/110 (39%), Positives = 65/110 (59%)
Query: 273 DANGEIVDPGNPSSSSKDVQQEVLESGR--LFVRNLPYTATEDELREHFSKFGNVSEVHI 330
+A+G I + SSS +VQ++ R LF+R+LP +AT + L EHFS+ + +
Sbjct: 12 EASGAITES---SSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVV 68
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA--RHK 378
VVD TK+SKG +V +A E A A+E L+ S F+G+ + V A RH+
Sbjct: 69 VVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHR 118
Score = 138 (53.6 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 273 DANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVV 332
D E D ++ +++ + +F+RNLP+T ++ L +HF++FG + IVV
Sbjct: 283 DEEDEDEDEEEEEEEEEEEKEDERNASTIFIRNLPFTCDDESLYDHFTQFGPLRYARIVV 342
Query: 333 DKDTKRSKGIAYVLYAIPESASRAIE 358
D +T+R +G +V + PE A ++
Sbjct: 343 DPETERPRGTGFVCFWKPEHAQACVQ 368
Score = 103 (41.3 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 289 KDVQQEVLESGRLFVRNLPYTA-TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLY 347
++ Q+ + +L VRNLP++ T ++L HF FG V ++ + K + G +V+
Sbjct: 140 REQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVK--YVTLPKKGSQLAGFGFVVL 197
Query: 348 AIPESASRAIEVLDNSIFQGRLLHVMPARHKK---SSDKQELH 387
++A +A+E ++ GR L V A K+ + K+E H
Sbjct: 198 RGKKNAEKALEAVNGKEVDGRTLAVDWAVEKEVWENLQKEEEH 240
Score = 86 (35.3 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 51/215 (23%), Positives = 93/215 (43%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLM-RTKDGKSRQFAFIGFRTEQEAEEAIKYFNK 63
+++LP T + L + FSQ I A ++ K +S+ + F+ F ++A+ A++ N
Sbjct: 41 IRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNG 100
Query: 64 SYLDTCRISCEIAR---KVGDPNMPRPW-SRYSL--KKEKEVSEDEKNPVLAAKRGEKKT 117
S + +I E A+ +V D + + S +L KK++E + + P R +
Sbjct: 101 STFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKKQREQQKADTQPPKLIVRNLPWS 160
Query: 118 IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGE-KSI 176
I K E+ F +V + K + G + + K +E +A+ G E
Sbjct: 161 I-KTPEDLAAHFRSFGKVKYVTLPKK-GSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGR 218
Query: 177 TLHVK-SDKSNVITDSQATEKSKNAAADELMSDMD 210
TL V + + V + Q E+ E SD+D
Sbjct: 219 TLAVDWAVEKEVWENLQKEEEHAEPDVKEESSDVD 253
Score = 74 (31.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 30/131 (22%), Positives = 63/131 (48%)
Query: 2 RICVKNLPKYV-TEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
++ V+NLP + T + L F G++ L + K + F F+ R ++ AE+A++
Sbjct: 151 KLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPK-KGSQLAGFGFVVLRGKKNAEKALEA 209
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE-DEKNPVLAAKRGEKKT 117
N +D T + + ++V + N+ + ++E S+ D ++ + GE
Sbjct: 210 VNGKEVDGRTLAVDWAVEKEVWE-NLQKEEEHAEPDVKEESSDVDMEDGGVGLDNGELD- 267
Query: 118 IEKVTENDDPQ 128
E ++E+DD +
Sbjct: 268 -EDMSEDDDEE 277
Score = 69 (29.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 43/177 (24%), Positives = 72/177 (40%)
Query: 446 EANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHV---FLVKNL 502
E + V A +V+ ET G +V S E K ++++ +V+NL
Sbjct: 104 EGKKIKVEYAQPRHRVVDET------VGKSVPSAEALERKKQREQQKADTQPPKLIVRNL 157
Query: 503 PYDSSEGE-LAKMFGKFGSLDKVILPSTKT-LA---LVVFLEPVEAAAAFKGLAYKRYKG 557
P+ E LA F FG + V LP + LA VV A A + + K G
Sbjct: 158 PWSIKTPEDLAAHFRSFGKVKYVTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDG 217
Query: 558 VPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVE 614
L ++WA + ++ K + + V E ++ +E G+ + ++D D E
Sbjct: 218 RTLAVDWAVEKEVWEN-LQKEEEHAEPDVKE-ESSDVDMEDGGVGLDNGELDEDMSE 272
Score = 69 (29.3 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 34/132 (25%), Positives = 57/132 (43%)
Query: 583 DAVVGEHDAKRALLEQQLEGVTD-ADIDPDRVESRSLFVKNL--NFKTCDENLRKHFGEH 639
D VG+ LE++ + AD P + L V+NL + KT E+L HF
Sbjct: 121 DETVGKSVPSAEALERKKQREQQKADTQPPK-----LIVRNLPWSIKT-PEDLAAHFRSF 174
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G++ V + K G ++ GFGF+ + A + G +DG L +
Sbjct: 175 ---GKVKYVTLPK---KGSQLA-GFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVE 227
Query: 700 KKDEQVVKKAEK 711
K+ + ++K E+
Sbjct: 228 KEVWENLQKEEE 239
Score = 67 (28.6 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCD 629
L + + ++++D V E D E++ E + + + +R S ++F++NL F TCD
Sbjct: 266 LDEDMSEDDDEEDDEVSDEEDEDED--EEEEEEEEEEEKEDERNAS-TIFIRNLPF-TCD 321
Query: 630 -ENLRKHF 636
E+L HF
Sbjct: 322 DESLYDHF 329
Score = 60 (26.2 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL-PSTKT---LA 533
EE K D +R+ ++NLP+ + L F +FG L ++++ P T+
Sbjct: 296 EEEEEEKED--ERNASTIFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTG 353
Query: 534 LVVFLEPVEAAAAFKG 549
V F +P A A +G
Sbjct: 354 FVCFWKPEHAQACVQG 369
Score = 46 (21.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 642 EGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701
EGR S KV + +G S G+GFIE+ + A R L G + + + KK
Sbjct: 567 EGRDGS-KVSED--SGAGRSRGYGFIEYYTHRHALMGLRWLNGHAISPPKNVSEELKDKK 623
Query: 702 DEQVVKKAEKDKSSTK 717
+V+ A ++ K
Sbjct: 624 KRLIVEFAIENAQVVK 639
Score = 40 (19.1 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 5/26 (19%), Positives = 19/26 (73%)
Query: 700 KKDEQVVKKAEKDKSSTKLLVRNVAF 725
+++E+ ++ E +++++ + +RN+ F
Sbjct: 293 EEEEEEEEEKEDERNASTIFIRNLPF 318
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 141 (54.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 67/277 (24%), Positives = 117/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + ++A RAIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K +K
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ T ++ G VS K + ++ ++ + G+ + +K +
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 275 ELKRRFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 130 (50.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 45/175 (25%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V +P + F +++++++ +E ++ G +
Sbjct: 216 KTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV----- 270
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 271 -ERQAELKRRFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 324
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L++G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 325 VM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 129 (50.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 113 (44.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 110 (43.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FSK+G V ++ D T +SKG +V + E A++A
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 248 VEEMNGKDINGKMVFVGRAQ-KKVERQAELKRRFEQ 282
Score = 106 (42.4 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L++ F ++ G+ LSVKV GK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY---GKTLSVKVMTD-PTGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
GF+ F+ E A ++ G ++G + + K + Q K
Sbjct: 234 GFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 104 (41.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + ++RL++ FS+ G+ K+M GKS+ F F+ F ++A +A++
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 102 (41.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 31/126 (24%), Positives = 64/126 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T+ A+ AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K + +DE+ L +K G+ +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 59 (25.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 139 (54.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 65/277 (23%), Positives = 119/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A++AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K + ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G++ + +K +
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 275 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 129 (50.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V + + F ++Y++++ +E +S S G +
Sbjct: 216 KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV----- 270
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 271 -ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 324
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L++G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 325 VM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 129 (50.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DENLR+ F + G+ LSVKV + +GK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF---GKTLSVKVMRDC-SGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G ++ + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 114 (45.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 113 (44.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ LR+ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 109 (43.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ LRE FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+ + V A+ KK + EL Q
Sbjct: 248 VEEMNGKEMSGKSIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 96 (38.9 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A +AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-SLRKSGVGN 100
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 150 (57.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 40/108 (37%), Positives = 59/108 (54%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +DV+ E L R+FV +P + TE++LRE F +G++ I+ +K T SKG+ Y
Sbjct: 109 SGSHRDVEDEELT--RIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGY 165
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
V Y P A++AIE D S R L P S +Q+ ++S Q
Sbjct: 166 VRYLKPSQAAQAIENCDRSF---RALLAEPKNKVSGSPEQDDYSSGRQ 210
Score = 118 (46.6 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ R+F+ +T+ E LRE FS FG++ ++ +V DK TK SKG+A+V +A A RA+
Sbjct: 25 NSRIFLVISKHTS-ELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAM 83
Query: 358 E 358
E
Sbjct: 84 E 84
Score = 109 (43.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 34/99 (34%), Positives = 45/99 (45%)
Query: 286 SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
S K E RLFV P+ D L + F +FGN+ EV++V K + YV
Sbjct: 379 SCKKKAPPETPVKERLFVVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYV 432
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ 384
YA +SA+ AI L I G L VM A + K+
Sbjct: 433 KYADRKSANEAITTLHGKILNGVRLKVMLADSPREESKK 471
Score = 83 (34.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 31/125 (24%), Positives = 62/125 (49%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+RI V +PK TE+ LR+ F G+I +++ K G+S+ ++ + +A +AI+
Sbjct: 121 TRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
Query: 60 YFNKSYLDTCRISCEIARKV-GDPNMPRPWSRYSLKKEKEVSEDEK-N--PVLAAKRGEK 115
++S+ + E KV G P YS +++ + ++ + N P + ++ E
Sbjct: 180 NCDRSFR---ALLAEPKNKVSGSPEQ----DDYSSGRQEALGQEPRANLFPFVGEQQSEF 232
Query: 116 KTIEK 120
T +K
Sbjct: 233 STFDK 237
Score = 66 (28.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
SRI + + K+ +E LR+ FS G+I D ++R K K S+ AF+ F +A A++
Sbjct: 26 SRIFLV-ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAME 84
Query: 60 YFNKSYL---DTCRISCEIAR 77
+ L DT I IA+
Sbjct: 85 EMHGQCLGPSDTKPIKVFIAQ 105
Score = 63 (27.2 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKA 709
++ +L +GKNV G++++ ++A L G IL+G L + L + ++E KK
Sbjct: 419 IEVYLVSGKNV----GYVKYADRKSANEAITTLHGKILNGVRLKVMLADSPREES--KKR 472
Query: 710 EK 711
++
Sbjct: 473 QR 474
Score = 58 (25.5 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRY 555
+F+V N P+ L +F +FG+L +V L S K + V + + A A L K
Sbjct: 394 LFVVFN-PHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKIL 452
Query: 556 KGVPLYLEWAPS 567
GV L + A S
Sbjct: 453 NGVRLKVMLADS 464
Score = 43 (20.2 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 502 LPYDSSEGELAKMFGKFGSLD------KVILPSTKTLALVVFLEPVEAAAAFK 548
+P +E +L + F +G ++ + +K L V +L+P +AA A +
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 139 (54.0 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 65/277 (23%), Positives = 119/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A++AIE
Sbjct: 28 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIE 85
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K + ++
Sbjct: 86 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 143
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G++ + +K +
Sbjct: 144 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 203
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 204 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 260
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 261 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 297
Score = 129 (50.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 282
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 283 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 313
Score = 129 (50.5 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V + + F ++Y++++ +E +S S G +
Sbjct: 145 KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV----- 199
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 200 -ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 253
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L++G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 254 VM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 304
Score = 120 (47.3 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DENLR+ F + G+ LSVKV + +GK S GF
Sbjct: 109 EAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF---GKTLSVKVMRDC-SGK--SKGF 162
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G ++ + K + Q K + ++ + + R
Sbjct: 163 GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 219
Score = 113 (44.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ LR+ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 61 FN 62
N
Sbjct: 180 MN 181
Score = 109 (43.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ LRE FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHEDANKA 176
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+ + V A+ KK + EL Q
Sbjct: 177 VEEMNGKEMSGKSIFVGRAQ-KKVERQAELKRKFEQ 211
Score = 96 (38.9 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A +AI+ N
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 88
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 89 GMLLNDRKV 97
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 134 (52.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
SL ++ KTL++ V +P + F ++Y++++ +E +S G
Sbjct: 108 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 167
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+ ++A L+++ E + I R + +L++KNL+ DE LRK F
Sbjct: 168 AQKKV------ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF 219
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G I S KV L++G+ S GFGF+ F S E AT ++ G I+ L + L
Sbjct: 220 ---GSITSAKVM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 272
Query: 700 KKDEQ 704
K++ +
Sbjct: 273 KEERK 277
Score = 132 (51.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 70/278 (25%), Positives = 116/278 (41%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 60
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ + R + V R K +++ G K K+ K + ++ L
Sbjct: 61 NGMLLNDRKVFV--GRFKSRKERE-----AELGAKA-KEFTNVYIKNFGEEVDDESLKEL 112
Query: 421 FMR-PDTVVENIARK-HGVSKS-DLLDREAND---LAVRIALGE--TQVIAETKKALTNA 472
F + T+ + R +G SK + E ++ AV G+ + I +A
Sbjct: 113 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 172
Query: 473 GVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS- 528
+F K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 173 ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG 232
Query: 529 -TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 233 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 270
Score = 129 (50.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 255
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 256 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 286
Score = 115 (45.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DE+L++ F + G+ LSVKV + NGK S GF
Sbjct: 82 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF---GKTLSVKVMRD-PNGK--SKGF 135
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 136 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 192
Score = 113 (44.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D + K SKG +V Y E A++A
Sbjct: 91 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKA 149
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 150 VEEMNGKEISGKIIFVGRAQ-KKVERQAELKRKFEQ 184
Score = 112 (44.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR +GKS+ F F+ + ++A +A++
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 61 FN 62
N
Sbjct: 153 MN 154
Score = 98 (39.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 61
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 62 GMLLNDRKV 70
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 139 (54.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 65/277 (23%), Positives = 119/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A++AIE
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K + ++
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G++ + +K +
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 275 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 129 (50.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
KTL++ V + + F ++Y++++ +E +S S G +
Sbjct: 216 KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV----- 270
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649
++A L+++ E + I R + +L++KNL+ DE LRK F G I S K
Sbjct: 271 -ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF---GSITSAK 324
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
V L++G+ S GFGF+ F S E AT ++ G I+ L + L K++ +
Sbjct: 325 VM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 129 (50.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 354 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 384
Score = 120 (47.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DENLR+ F + G+ LSVKV + +GK S GF
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF---GKTLSVKVMRDC-SGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G ++ + K + Q K + ++ + + R
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 114 (45.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G V + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Score = 113 (44.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ LR+ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 109 (43.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ LRE FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHEDANKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+ + V A+ KK + EL Q
Sbjct: 248 VEEMNGKEMSGKSIFVGRAQ-KKVERQAELKRKFEQ 282
Score = 96 (38.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A +AI+ N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 160 GMLLNDRKV 168
Score = 60 (26.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G + ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 115 (45.5 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQVVNLYVKNLDDGIDDERLRKAFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 113 (44.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 109 (43.4 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +FV+NL + L + S FGN+ ++V D++ SKG +V + E+A RAI+
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ 384
++ + GR + V + +K + +
Sbjct: 157 KMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 108 (43.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+ N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 63 KSYLDTCRISCEIARK 78
L+ +I A+K
Sbjct: 253 GKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 70/312 (22%), Positives = 122/312 (39%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + I D T S AYV + + A A++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ + +G+ + +M ++ S K + N + S A GN + N +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS-AFGNILSCNVV 131
Query: 421 FMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLE 480
D EN ++ +G + EA + A++ G ++ +K S +
Sbjct: 132 C---D---ENGSKGYGFVHFET--HEAAERAIKKMNG---MLLNGRKVFVG---QFKSRK 177
Query: 481 EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLD-KVILPST---KTLALV 535
E A K +V+ +KN D + L +FGKFG +L KV+ + K V
Sbjct: 178 EREAELGARAKEFPNVY-IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKG--NQKNDAVVGEHDAKR 593
F +A A + K G +Y+ A V Q+ + K D + +
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRIT-RYQVVN 295
Query: 594 ALLEQQLEGVTD 605
++ +G+ D
Sbjct: 296 LYVKNLDDGIDD 307
Score = 104 (41.7 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFPNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
GF+ F+ E A ++ G L+G + + K + Q K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 103 (41.3 bits), Expect = 7.2e-11, Sum P(3) = 7.2e-11
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL + Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRTFEQ 282
Score = 91 (37.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 33/126 (26%), Positives = 58/126 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNL K + L D S G I ++ ++G S+ + F+ F T + AE AIK N
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + + +K E +DE+ L K G +
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 68 (29.0 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 482 FSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS--TKTLALVV 536
F K D + R V L VKNL + L K F FG++ KV++ +K V
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 537 FLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
F P EA A + + PLY+ A
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 62 (26.9 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R S +A++ F+ ++AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMN 73
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 141 (54.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 66/270 (24%), Positives = 111/270 (41%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + TE L E F+ G V+ + + D T+RS G AYV + E +A+
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAW 417
+ L+ ++ +GR +M ++ S K G +K ++A +T +
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKM------GTGNVFIKNLDPAID--NKALHDTFSA 190
Query: 418 NSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVS 477
+ V+ + G E+ + A+ G ++ KK G +VS
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG---MLLNDKKVYV--GHHVS 245
Query: 478 SLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-----L 532
E S K + LK + +KNL + +E E + +FG+FG + + L +
Sbjct: 246 RRERQS--KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGF 303
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562
V + A A L K YKG LY+
Sbjct: 304 GFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 132 (51.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LF++NL ++ L+ FS FG ++ I+ D+ K SKG +V Y PE A++A+ +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEM 424
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ + G+ L+V A+ K+
Sbjct: 425 NQRMLAGKPLYVALAQRKE 443
Score = 124 (48.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 69/296 (23%), Positives = 124/296 (41%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S +D + +G +F++NL L + FS FG + + VD + +KG +V
Sbjct: 156 SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVH 214
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHV--MPARHKKSSDKQELH-NSTSQGTKTLKQXXXX 403
+ ESA+ AIE ++ + + ++V +R ++ S + L N T+ K L
Sbjct: 215 FDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNL-DTEIT 273
Query: 404 XXKASEASGNTKAWNSLFMRPDTVVE-------NIARKHGVSKS--DLLDREANDLAVRI 454
+ S+ G SL + D + N A K+ +L D+E ++
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKL 331
Query: 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKM 514
+G Q E ++ L + LE+ + K G+ ++F +KNL + + L
Sbjct: 332 YVGRAQKKHEREEELRKRYEQMK-LEKMN--KYQGV----NLF-IKNLQDEVDDERLKAE 383
Query: 515 FGKFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
F FG++ K++ +K V + P EA A + + G PLY+ A
Sbjct: 384 FSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Score = 110 (43.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KNL +TE D F Q GEIT L++ ++ K R F F+ + + A++A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 61 FN-KSY 65
N K Y
Sbjct: 321 LNDKEY 326
Score = 95 (38.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
++ + +LF+KNL + DE L+ F G I S K+ + GK S GFGF+ +
Sbjct: 359 NKYQGVNLFIKNLQDEVDDERLKAEFSAF---GTITSAKIMTD-EQGK--SKGFGFVCYT 412
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEA 727
+ E A ++ +L G L + L K+ + +A+ + L + VA A
Sbjct: 413 TPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAA 469
Score = 87 (35.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 31/138 (22%), Positives = 66/138 (47%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L D FS G+I K+ + G ++ + F+ F + + A AI++ N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 63 KSYLDTCRISC--EIARKVGDPNMPRPWSRYS---LKK-EKEVSEDEKNPVLAAKRGEKK 116
L+ ++ ++R+ + + ++ +K + E++E E + L + GE
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSD-LFGQFGEIT 288
Query: 117 TIEKVTE-NDDPQLLEFL 133
++ V + ND P+ F+
Sbjct: 289 SLSLVKDQNDKPRGFGFV 306
Score = 63 (27.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V L VTE L + F+ G + ++ R +S +A++ F ++ E+A+ N
Sbjct: 84 VGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNY 143
Query: 64 SYLD--TCRI 71
+ + CRI
Sbjct: 144 TLIKGRPCRI 153
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 128 (50.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 40/124 (32%), Positives = 54/124 (43%)
Query: 277 EIVDPGNPSSSSKDVQQEVLESG-RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD 335
E+ D N + E+++S L V LP ++DELR FS G V ++ DK
Sbjct: 13 EVYDMSN--GYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKV 70
Query: 336 TKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGT 394
S G +V Y P A RAI L+ Q + + V AR S K L+ S T
Sbjct: 71 AGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKT 130
Query: 395 KTLK 398
T K
Sbjct: 131 MTQK 134
Score = 114 (45.2 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +++D LR FS GE+ AKL+R K G S + F+ + +AE AI
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 60 YFNKSYLDTCRISCEIARKVGD 81
N L + I AR D
Sbjct: 94 TLNGLRLQSKTIKVSYARPSSD 115
Score = 94 (38.1 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 17/66 (25%), Positives = 38/66 (57%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
++ L++ LP T T+ ++ E F ++G + ++VD+ + S+G+A++ + A
Sbjct: 117 IKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAED 176
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 177 AIKDLN 182
Score = 89 (36.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ NL A E L + F FG V+ V ++ D +T + KG +V E A+ AI L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 361 DNSIFQGRLLHV 372
+ ++L V
Sbjct: 320 NGYRLGDKILQV 331
Score = 66 (28.3 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
++V + S G S + NL D+ EG L +MFG FG++ V
Sbjct: 237 MSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 287
Score = 63 (27.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 49/224 (21%), Positives = 87/224 (38%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTL----ALV 535
++ +D +K +N + LP ++ ++ +MFG++G + +V++ L A +
Sbjct: 109 YARPSSDSIKDAN--LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFI 166
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGE--HDAKR 593
F + EA A K L ++ G A + + + S KN V+ + H R
Sbjct: 167 RFDKRAEAEDAIKDLNGQKPPG-------AAEQMTVKFAASPNQVKNTQVIPQVYHQQSR 219
Query: 594 AL---LEQQLEGVTDADIDPDRVESRS-LFVK-NLNFKTCD--ENLRKHFGEHI------ 640
+ Q + + + D + S + V N + C NL + E I
Sbjct: 220 RFGGPVHHQAQRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFG 279
Query: 641 KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ E A L G
Sbjct: 280 PFGAVTNVKVIRDFNTNK--CKGFGFVTMTHYEEAAMAIASLNG 321
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 109 (43.4 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +FV+NL + L + S FGN+ ++V D++ SKG +V + E+A RAI+
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ 384
++ + GR + V + +K + +
Sbjct: 157 KMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+ N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 63 KSYLDTCRISCEIARK 78
L+ +I A+K
Sbjct: 253 GKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 70/312 (22%), Positives = 122/312 (39%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + I D T S AYV + + A A++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSL 420
+ + +G+ + +M ++ S K + N + S A GN + N +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS-AFGNILSCNVV 131
Query: 421 FMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLE 480
D EN ++ +G + EA + A++ G ++ +K S +
Sbjct: 132 C---D---ENGSKGYGFVHFET--HEAAERAIKKMNG---MLLNGRKVFVG---QFKSRK 177
Query: 481 EFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLD-KVILPST---KTLALV 535
E A K +V+ +KN D + L +FGKFG +L KV+ + K V
Sbjct: 178 EREAELGARAKEFPNVY-IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKG--NQKNDAVVGEHDAKR 593
F +A A + K G +Y+ A V Q+ + K D + +
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRIT-RYQVVN 295
Query: 594 ALLEQQLEGVTD 605
++ +G+ D
Sbjct: 296 LYVKNLDDGIDD 307
Score = 104 (41.7 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFPNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
GF+ F+ E A ++ G L+G + + K + Q K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 103 (41.3 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL + Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRTFEQ 282
Score = 91 (37.1 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 33/126 (26%), Positives = 58/126 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNL K + L D S G I ++ ++G S+ + F+ F T + AE AIK N
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + + +K E +DE+ L K G +
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 90 (36.7 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQVVNLYVKNLDDGIDDERLRKAFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETAT 676
E AT
Sbjct: 343 PEEAT 347
Score = 89 (36.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESAS 354
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A+
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEAT 347
Score = 62 (26.9 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R S +A++ F+ ++AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMN 73
Score = 59 (25.8 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 482 FSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS--TKTLALVV 536
F K D + R V L VKNL + L K F FG++ KV++ +K V
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 537 FLEPVEA 543
F P EA
Sbjct: 340 FSSPEEA 346
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 144 (55.7 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 44/175 (25%), Positives = 82/175 (46%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV LP +A D+L E FS+ G V + +V +K +K +G YV +++ E RA++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 361 DNSIFQGRLLHVMPARHK-KSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNS 419
+ F+G ++V A+ K K+ K+ N S+ K K+ K ++ N
Sbjct: 66 --TTFEGCKINVTIAKKKLKNKSKETRKNENSESPK--KEPKHKKAKVADKKARLIIRNL 121
Query: 420 LFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV 474
F + ++++ +G + R+ + A + + + E KAL A +
Sbjct: 122 SFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANM 176
Score = 125 (49.1 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 272 EDANGEIVDPGNPSSSSKD--VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVH 329
E + E+ D P S K + +V E +F+RNL + + E+ L E +FG++ V
Sbjct: 300 ESSTEELEDEDVPVSKKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR 359
Query: 330 IVVDKDTKRSKGIAYVLYAIPESASRAI 357
IV+ DT+ SKG A+ + E+A + +
Sbjct: 360 IVLHPDTEHSKGCAFAQFVTQEAAQKCL 387
Score = 120 (47.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 283 NPSSSSKDVQQEVLES-GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
+P K + +V + RL +RNL + +ED+L+ F+ +G V EV+I D K +G
Sbjct: 97 SPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKM-RG 155
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK-KSSDKQELHNSTSQGTKTLKQX 400
A++ + A +A++ + +GR + V A K K D Q H S S G K+ ++
Sbjct: 156 FAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQ--HTSVSGGKKSSERK 213
Query: 401 XXXXXKAS 408
K S
Sbjct: 214 PKESSKKS 221
Score = 116 (45.9 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ ++NL +ED L+ F+ G + + + R DGK R FAFI F+ EA +A+K
Sbjct: 114 ARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKG 173
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT- 117
N + T + +A+ +Y + VS +K+ K KK+
Sbjct: 174 ANMKEIKGRTVAVDWAVAK-----------DKYKDAQHTSVSGGKKSSERKPKESSKKSC 222
Query: 118 -IEKVTENDD 126
+E+ E+DD
Sbjct: 223 RVEEQVEDDD 232
Score = 90 (36.7 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 54/215 (25%), Positives = 89/215 (41%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS-RQFAFIGFRTEQEAEEAIKYFNK 63
V LP D+L + FSQ G + ++ K K+ R F ++ F ++ + A+K
Sbjct: 8 VGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT 67
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT---IE- 119
+ C+I+ IA+K + S+ + K E S ++ AK +KK I
Sbjct: 68 --FEGCKINVTIAKK-----KLKNKSKETRKNENSESPKKEPKHKKAKVADKKARLIIRN 120
Query: 120 ---KVTENDDPQLLEF----LQVMQPRV---KSKMWANDTLIGLMADQKAKVSENISQAI 169
K +E+D + L+V PR K + +A L+ KA N+ + I
Sbjct: 121 LSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKE-I 179
Query: 170 KGGEKSITLHVKSDKSNVITDSQATEKSKNAAADE 204
KG ++ V DK D+Q T S + E
Sbjct: 180 KGRTVAVDWAVAKDKYK---DAQHTSVSGGKKSSE 211
Score = 64 (27.6 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL-PSTKTLALVVFLEPVEAAAAFKGLA 551
VF ++NL +DS E L ++ +FG L +++L P T+ F + V AA K LA
Sbjct: 331 VF-IRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLA 388
Score = 64 (27.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 30/113 (26%), Positives = 50/113 (44%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKE-GRILSVKVKKHLKNGKNVSMGFGFIEF 669
D E +++F++NL+F + +E L GE +++ G + V++ H S G F +F
Sbjct: 324 DVTEGKTVFIRNLSFDSEEEAL----GEVLQQFGDLKYVRIVLHPDTEH--SKGCAFAQF 377
Query: 670 DSVETATNVCRDLQ------GTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
+ E A G LDG L + L +DE + +K K T
Sbjct: 378 VTQEAAQKCLAAASPETEGGGLKLDGRQLKVDLA-VTRDEAAKLQTKKVKKPT 429
Score = 45 (20.9 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 658 KNVSMGFGFIEFDSVETATNVCR 680
K S+G+ F+EF E A R
Sbjct: 477 KGQSLGYAFVEFQKHEHALRALR 499
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 153 (58.9 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 41/134 (30%), Positives = 69/134 (51%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGNPSS-SSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S +K S V + E + G + K+ Q LF+RNLP+ T++E+++
Sbjct: 520 SKLKSSSTKPVADSSGVSEPLKSGKTKVVAPKETQDNDDFERTLFIRNLPFDVTKEEVKQ 579
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNS-----IFQGRLLHV 372
F+ FG V + +V+ K TKR +G A+V + +++ AI D + + +GR L+V
Sbjct: 580 RFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVLLKGRQLNV 639
Query: 373 MPARHKKSSDKQEL 386
M A KK++ EL
Sbjct: 640 MRAVGKKAAKDIEL 653
Score = 138 (53.6 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 303 VRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN 362
V LPY+ T +L E FS+ G V +V +K + +G A+V +A+ E +RAIE+ +
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 363 SIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
S GR + V A H+ S QE ++G
Sbjct: 84 STVGGRRITVKQAAHRPSL--QERRTKAAEG 112
Score = 96 (38.9 bits), Expect = 8.1e-07, Sum P(4) = 8.1e-07
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L +RNLP+ A +++ FS G V +V I + +T KG A+V + + A+ AI+
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 360 LDNSIFQGRLLHV 372
+ +F R + V
Sbjct: 392 FNGHMFGKRPIAV 404
Score = 92 (37.4 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIKYF 61
+CV LP +T +L + FS+ G + L+ K + R FAF+ F +++ AI+
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 62 NKSYLDTCRISCEIA 76
N S + RI+ + A
Sbjct: 82 NGSTVGGRRITVKQA 96
Score = 84 (34.6 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 46/211 (21%), Positives = 84/211 (39%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRT-KDGKSRQFAFIGFRTEQEAEEAIKY 60
++ ++NLP ++ FS G + D + + + G + FAF+ F +++A AIK
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE-DEKNPVLAAKRGEKKTIE 119
FN I+ + A N + S +KE S+ D +N + + ++
Sbjct: 392 FNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDGDSENSSVDLEEVDEAVES 451
Query: 120 KVTENDDPQLLE--FLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSIT 177
DD E ++ + K D AD KV +N+ + KG +
Sbjct: 452 HPPPGDDTDDDEDGSNKLTESDALDKDVGTDMNFEDEADVARKVLKNLLASSKGSTATPE 511
Query: 178 LHVK-SDKSNVITDSQATEKSKNAAADELMS 207
+ SDKS + + S + ++ L S
Sbjct: 512 GETEESDKSKLKSSSTKPVADSSGVSEPLKS 542
Score = 77 (32.2 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 27/126 (21%), Positives = 54/126 (42%)
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST------KTLALVVFLEPV 541
+G K +++NLP+ + ++ +F G + V +P K A V F
Sbjct: 324 EGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKK 383
Query: 542 EAAAAFKGLAYKRYKGVPLYLEWA-PSDVLS---QSSTSKGNQKNDAVVGEHDAKRALLE 597
+AA A K + P+ ++WA P ++ + ++T+ + + G+ + LE
Sbjct: 384 DAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDGDSENSSVDLE 443
Query: 598 QQLEGV 603
+ E V
Sbjct: 444 EVDEAV 449
Score = 66 (28.3 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
D D E R+LF++NL F E +++ F G + S+ + H K K G F++
Sbjct: 555 DNDDFE-RTLFIRNLPFDVTKEEVKQRFTVF---GEVESLSLVLH-KVTKRPE-GTAFVK 608
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
F + + + V G ++L+ V KKA KD K +NV
Sbjct: 609 FKTADAS--VAAISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNV 661
Score = 59 (25.8 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
+ + L ++NL F+ +++ F G + V + K+ + G + GF F++F
Sbjct: 327 KAQKWKLIIRNLPFQAKPSDIKVVFSA---VGFVWDVFIPKNFETG--LPKGFAFVKFTC 381
Query: 672 VETATNVCRDLQG 684
+ A N + G
Sbjct: 382 KKDAANAIKKFNG 394
Score = 56 (24.8 bits), Expect = 8.1e-07, Sum P(4) = 8.1e-07
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 463 AETKKALTNAGVNVSSLEEFSAGKTDGLK----RSNHVF----LVKNLPYDSSEGELAKM 514
+ TK ++GV+ E +GKT + + N F ++NLP+D ++ E+ +
Sbjct: 525 SSTKPVADSSGVS----EPLKSGKTKVVAPKETQDNDDFERTLFIRNLPFDVTKEEVKQR 580
Query: 515 FGKFGSLDKVIL 526
F FG ++ + L
Sbjct: 581 FTVFGEVESLSL 592
Score = 45 (20.9 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 651 KKHLKNGKNVSMGFGFIEFDSVETATNVCRDL 682
KK + KN S G F+EF E A R L
Sbjct: 758 KKGKVDTKNYSRGVAFVEFTEHEHALVALRVL 789
Score = 39 (18.8 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLE 601
+S S+G D + E D K + E++LE
Sbjct: 113 ISVPDNSQGQSDKDTSIPETDEKVSPPEKKLE 144
Score = 39 (18.8 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQ 728
F SV++A L T + G+ L A++ KA+K KL++RN+ F+A+
Sbjct: 293 FTSVKSACAAVAKLHQTEVKGN-----LIWARQLGGEGSKAQK----WKLIIRNLPFQAK 343
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 119 (46.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 123 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 175
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 176 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 208
Score = 115 (45.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 186
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 187 NGRIVATKPLYVALAQRKE 205
Score = 109 (43.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 84 MNGKELNGKQIYVGRAQK 101
Score = 102 (41.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 22 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 80
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 81 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 115
Score = 69 (29.3 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 28/90 (31%), Positives = 39/90 (43%)
Query: 481 EFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS--TKTLALV 535
+F K D + R V L VKNL + L K F FG++ KV++ +K V
Sbjct: 112 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFV 171
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
F P EA A + + PLY+ A
Sbjct: 172 CFSSPEEATKAVTEMNGRIVATKPLYVALA 201
Score = 60 (26.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 29/122 (23%), Positives = 49/122 (40%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLD-KVILPST---KTLALVVFLEPVEAAA 545
K +V+ +KN D + L +FGKFG +L KV+ + K V F +A
Sbjct: 21 KEFTNVY-IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 79
Query: 546 AFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKG--NQKNDAVVGEHDAKRALLEQQLEGV 603
A + K G +Y+ A V Q+ + K D + + ++ +G+
Sbjct: 80 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKNLDDGI 138
Query: 604 TD 605
D
Sbjct: 139 DD 140
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 133 (51.9 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFVRNL + +D+L FS G + +V + +T ++G +V +++ E A RA + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399
N GR+L + A +K S+ N + KT++Q
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVK--KTIRQ 103
Score = 124 (48.7 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 267 SGVGEEDANG--EIVDPGNPSSSSKDVQQEVLESGRL----FVRNLPYTATEDELREHFS 320
+G EE+ + ++ D G+ SS + E+ ++ L FVRNL + TE EL HF
Sbjct: 239 AGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFR 298
Query: 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+FG ++ +V D T RS G ++ + + +E+
Sbjct: 299 QFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEM 337
Score = 115 (45.5 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 35/115 (30%), Positives = 58/115 (50%)
Query: 279 VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDE-LREHFSKFGNVSEVHIVVDKDTK 337
VD + K ++Q+ RL +RNLP++ + + L HFSKFG V E+ I K
Sbjct: 89 VDTDQNKAVKKTIRQD--NRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGG 145
Query: 338 RSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
R G A+V ++A A+ L+ + GR + V A K + + L +++S+
Sbjct: 146 RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSE 200
Score = 96 (38.9 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 51/219 (23%), Positives = 96/219 (43%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S + V+NL +D L +FFS G I A ++ + G++R + F+ F ++A+ A K
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 60 YFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE---DEKNPVLAAKRGEKK 116
L + + A PR S + K V + + P L R
Sbjct: 65 ELKNKKLHGRILRLDFAT-------PRKRSEVDTDQNKAVKKTIRQDNRPRLII-RNLPW 116
Query: 117 TIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGL----MADQKAKVSENISQAIKGG 172
+I+K ++ +P +F +V + ++ +K + G M D+KA +E ++ G
Sbjct: 117 SIKK-PQHLEPHFSKFGKVREIKIPTK--GGGRMCGFAFVWMKDRKA--AEEAMNSLNGT 171
Query: 173 E---KSITLH--VKSD--KSNVITDSQATEKSKNAAADE 204
E + I + V D ++ + D+ + E++K +DE
Sbjct: 172 EIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDE 210
Score = 86 (35.3 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 26/110 (23%), Positives = 56/110 (50%)
Query: 2 RICVKNLPKYVTEDR-LRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R+ ++NLP + + + L FS+ G++ + K+ G+ FAF+ + + AEEA+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 61 FNKSYLDTCRISCE--IARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVL 108
N + +D I+ + +++ + + S S ++ KE DE + ++
Sbjct: 168 LNGTEIDGRPIAVDWAVSKDAFEATTLKDAS--SEEENKEFVSDEGHSIV 215
Score = 68 (29.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 612 RVESRS-LFVKNLNFKTCD-ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
R ++R L ++NL + ++L HF K G++ +K+ K G + GF F+
Sbjct: 102 RQDNRPRLIIRNLPWSIKKPQHLEPHFS---KFGKVREIKIPT--KGGGRMC-GFAFVWM 155
Query: 670 DSVETATNVCRDLQGTILDGHALILQLCHAKK--DEQVVKKAEKDKSSTKLL 719
+ A L GT +DG + + +K + +K A ++ + + +
Sbjct: 156 KDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFV 207
Score = 67 (28.6 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 26/122 (21%), Positives = 52/122 (42%)
Query: 498 LVKNLPYDSSEGE-LAKMFGKFGSLDKVILPSTKT------LALVVFLEPVEAAAAFKGL 550
+++NLP+ + + L F KFG + ++ +P TK A V + A A L
Sbjct: 110 IIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 551 AYKRYKGVPLYLEWAPSDVLSQSSTSK---GNQKNDAVVGEHDAKRALLEQQLEGVTDAD 607
G P+ ++WA S +++T K ++N V + + + ++ +
Sbjct: 169 NGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEE 228
Query: 608 ID 609
+D
Sbjct: 229 VD 230
Score = 67 (28.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 32/136 (23%), Positives = 63/136 (46%)
Query: 556 KGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRV-- 613
+G + E A +D S+ G+ + + GE + + + ++ +E D+ D + +
Sbjct: 210 EGHSIVTEDASADSESEEEVD-GHSEGKELAGESEEEGSNVDD-VEDSGDSSSDKNSINH 267
Query: 614 ESR-------SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666
E R ++FV+NL F+ ++ L HF + G + K+ K + S+G GF
Sbjct: 268 EIRDNEGLEDTVFVRNLLFECTEQELYNHFRQF---GPLAYAKLVKDPATDR--SLGRGF 322
Query: 667 IEFDSVETATNVCRDL 682
I+F + N C ++
Sbjct: 323 IKFRYEKDCQN-CLEM 337
Score = 65 (27.9 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 629 DENLRK-HFGEHIKEGRILS-VKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
+ENL K H + K G +L KV+ K G S GFGF++F S + A R L G
Sbjct: 505 EENLDKGHRLKRGKSGGVLKQAKVETE-KAGAGRSKGFGFMQFISHKYALMALRWLNG 561
Score = 48 (22.0 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL 521
+GL+ + VF V+NL ++ +E EL F +FG L
Sbjct: 273 EGLEDT--VF-VRNLLFECTEQELYNHFRQFGPL 303
Score = 44 (20.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 429 ENIARKHGVSKSDLLDREANDLAVRIA 455
+N+ RK S+SD+ D EA + ++A
Sbjct: 635 DNLKRKR--SESDVEDNEAKEKQAKVA 659
Score = 42 (19.8 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 19/87 (21%), Positives = 37/87 (42%)
Query: 432 ARKHGVSKSDLLDREAND----LAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKT 487
ARKH + + L + + ND L V A+ QV+ ++ + L++
Sbjct: 577 ARKHKIPEPQLPNIDYNDRPRRLIVEFAIENIQVVKRRQEKEKSFRQKAKQLKQQE--DE 634
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKM 514
D LKR V++ + ++A++
Sbjct: 635 DNLKRKRSESDVEDNEAKEKQAKVARI 661
Score = 39 (18.8 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 30/129 (23%), Positives = 52/129 (40%)
Query: 603 VTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSM 662
+ D ID D V SR L L K RK + I + S++ +K K GK V
Sbjct: 358 LVDEGIDTDSVSSRFLLHGRL-LKVTSAVTRKEASD-INQK---SLQERKQ-KMGKGVDR 411
Query: 663 GFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
F+ + + A + L ++ + + A++ + + K S +L +RN
Sbjct: 412 RHLFL-LNEGKIAAD--HPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRN 468
Query: 723 VAFEAQRKI 731
++ KI
Sbjct: 469 ISRHIDPKI 477
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 134 (52.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 68/279 (24%), Positives = 117/279 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXX--KASEASGNT 414
++ + R + V R K +++ EL + T +K + E G
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-- 212
Query: 415 KAWNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTN 471
K +L ++ T ++ G VS + + + +++ + G+ + +K +
Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 472 AGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS 528
+F K D + R V L VKNL + L K F FG++ KV++
Sbjct: 273 ---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329
Query: 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L++ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 105 (42.0 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 105 (42.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL++ F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 103 (41.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 134 (52.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 68/279 (24%), Positives = 117/279 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXX--KASEASGNT 414
++ + R + V R K +++ EL + T +K + E G
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-- 212
Query: 415 KAWNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTN 471
K +L ++ T ++ G VS + + + +++ + G+ + +K +
Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 472 AGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS 528
+F K D + R V L VKNL + L K F FG++ KV++
Sbjct: 273 ---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329
Query: 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L++ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 105 (42.0 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 105 (42.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL++ F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 103 (41.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 144 (55.7 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 44/175 (25%), Positives = 82/175 (46%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV LP +A D+L E FS+ G V + +V +K +K +G YV +++ E RA++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 361 DNSIFQGRLLHVMPARHK-KSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNS 419
+ F+G ++V A+ K K+ K+ N S+ K K+ K ++ N
Sbjct: 66 --TTFEGCKINVTIAKKKLKNKSKETRKNENSESPK--KEPKHKKAKVADKKARLIIRNL 121
Query: 420 LFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV 474
F + ++++ +G + R+ + A + + + E KAL A +
Sbjct: 122 SFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANM 176
Score = 126 (49.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 55/225 (24%), Positives = 93/225 (41%)
Query: 272 EDANGEIVDPGNPSSSSKD--VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVH 329
E + E+ D P S K + +V E +F+RNL + + E+ L E +FG++ V
Sbjct: 296 ESSTEELEDEDVPVSKKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR 355
Query: 330 IVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS 389
IV+ DT+ SKG A+ + E+A + + G L + R K +L +
Sbjct: 356 IVLHPDTEHSKGCAFAQFVTQEAAQKCLAAASPETEGGGLK--LDGRQLKV----DLAVT 409
Query: 390 TSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND 449
+ K + K + +G T+ N R + GVS +D+ RE +
Sbjct: 410 RDEAAKLQTK------KVKKPTG-TR--NLYLAREGLIRAGTKAAEGVSAADMAKRERFE 460
Query: 450 LAVRIALGETQV-IAETKKALTNA--GVNVSSLEEFSAGKTDGLK 491
L L + +++T+ L N V+ L + T G K
Sbjct: 461 LLKHQKLKNQNIFVSQTRLCLHNLPKSVDDKQLRKLLLQATGGEK 505
Score = 125 (49.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 69/293 (23%), Positives = 133/293 (45%)
Query: 283 NPSSSSKDVQQEVLES-GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
+P K + +V + RL +RNL + +ED+L+ F+ +G V EV+I D K +G
Sbjct: 97 SPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKM-RG 155
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHV---------MPARH------KKSSDKQEL 386
A++ + A +A++ + +GR + V A+H KKSS+++
Sbjct: 156 FAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERKP- 214
Query: 387 HNSTSQGTKTLKQXXXXXXKASEASGNTK--AWNSLFMRPDTVVENIARKHGVSKSDLLD 444
S+ + + +Q + + + + + +S P +V + ++ +S D
Sbjct: 215 KESSKKSCRVEEQVEDDDDDEDDDTQDDEDESRDSTVASPVSVRKRAVKRAAPEESTEED 274
Query: 445 R-EANDLAV-RIALGETQVIAETK-KALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKN 501
+ +DL + G+ +E+ + L + V VS ++ +D + VF ++N
Sbjct: 275 TYDDSDLEEGSSSYGDGTAHSESSTEELEDEDVPVSKKKKRKL-PSD-VTEGKTVF-IRN 331
Query: 502 LPYDSSEGELAKMFGKFGSLD--KVIL-PSTKTLALVVFLEPVEAAAAFKGLA 551
L +DS E L ++ +FG L +++L P T+ F + V AA K LA
Sbjct: 332 LSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLA 384
Score = 116 (45.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ ++NL +ED L+ F+ G + + + R DGK R FAFI F+ EA +A+K
Sbjct: 114 ARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKG 173
Query: 61 FNKSYLD--TCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT- 117
N + T + +A+ +Y + VS +K+ K KK+
Sbjct: 174 ANMKEIKGRTVAVDWAVAK-----------DKYKDAQHTSVSGGKKSSERKPKESSKKSC 222
Query: 118 -IEKVTENDD 126
+E+ E+DD
Sbjct: 223 RVEEQVEDDD 232
Score = 109 (43.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 34/123 (27%), Positives = 59/123 (47%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
+++NL + SE +L +F +G++ +V +P + A + F +EA A KG
Sbjct: 117 IIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANM 176
Query: 553 KRYKGVPLYLEWAPS-DVLSQS---STSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADI 608
K KG + ++WA + D + S S G + ++ E K +E+Q+E D D
Sbjct: 177 KEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERKPKESSKKSCRVEEQVED-DDDDE 235
Query: 609 DPD 611
D D
Sbjct: 236 DDD 238
Score = 90 (36.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 54/215 (25%), Positives = 89/215 (41%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS-RQFAFIGFRTEQEAEEAIKYFNK 63
V LP D+L + FSQ G + ++ K K+ R F ++ F ++ + A+K
Sbjct: 8 VGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT 67
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT---IE- 119
+ C+I+ IA+K + S+ + K E S ++ AK +KK I
Sbjct: 68 --FEGCKINVTIAKK-----KLKNKSKETRKNENSESPKKEPKHKKAKVADKKARLIIRN 120
Query: 120 ---KVTENDDPQLLEF----LQVMQPRV---KSKMWANDTLIGLMADQKAKVSENISQAI 169
K +E+D + L+V PR K + +A L+ KA N+ + I
Sbjct: 121 LSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKE-I 179
Query: 170 KGGEKSITLHVKSDKSNVITDSQATEKSKNAAADE 204
KG ++ V DK D+Q T S + E
Sbjct: 180 KGRTVAVDWAVAKDKYK---DAQHTSVSGGKKSSE 211
Score = 64 (27.6 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 30/113 (26%), Positives = 50/113 (44%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKE-GRILSVKVKKHLKNGKNVSMGFGFIEF 669
D E +++F++NL+F + +E L GE +++ G + V++ H S G F +F
Sbjct: 320 DVTEGKTVFIRNLSFDSEEEAL----GEVLQQFGDLKYVRIVLHPDTEH--SKGCAFAQF 373
Query: 670 DSVETATNVCRDLQ------GTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
+ E A G LDG L + L +DE + +K K T
Sbjct: 374 VTQEAAQKCLAAASPETEGGGLKLDGRQLKVDLA-VTRDEAAKLQTKKVKKPT 425
Score = 58 (25.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHI--KEG-RILSVKVKKHLK--NGK--NVSMGFG 665
V L + NL D+ LRK + ++G RI +V + LK +GK S+G+
Sbjct: 474 VSQTRLCLHNLPKSVDDKQLRKLLLQATGGEKGVRIKECRVMRDLKAVHGKMKGQSLGYA 533
Query: 666 FIEFDSVETATNVCR 680
F+EF E A R
Sbjct: 534 FVEFQKHEHALRALR 548
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 146 (56.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
+S S +QE + +FVRNL + AT + L E FS++GNV + + D SKG +
Sbjct: 61 NSGSSLPRQE--QPNGIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDA-RGLSKGFGF 117
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPA-RHKKSSDKQELHNSTSQGTKTL 397
+ + PE+A +A E +N+ + GR ++V P + K ++ ++ T +L
Sbjct: 118 IYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTSSL 171
Score = 121 (47.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 31/121 (25%), Positives = 61/121 (50%)
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF 669
P + + +FV+NL F +E+L + F ++ G ++ KV + + + +S GFGFI F
Sbjct: 67 PRQEQPNGIFVRNLVFDATNEHLAEAFSQY---GNVVDAKVAR---DARGLSKGFGFIYF 120
Query: 670 DSVETATNVCRDLQGTILDGHAL-ILQLCHAKK--DEQVVKKAEKDKSSTKLLVRNVAFE 726
++ E A C + T G + + A K + + + E+ +S+ L + N+ +E
Sbjct: 121 ETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTSS-LYIGNIPYE 179
Query: 727 A 727
+
Sbjct: 180 S 180
Score = 116 (45.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 281 PGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSK 340
PGN + + Q+E + L++ N+PY +T+ L F + +V I VD+ T +
Sbjct: 154 PGNRDAMN---QEERTPTSSLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPR 210
Query: 341 GIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
G A+ + ESA++A+E + GR L V
Sbjct: 211 GFAHADFKDVESATKAVEKVKLMELMGRTLRV 242
Score = 113 (44.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I V+NL T + L + FSQ G + DAK+ R G S+ F FI F T + A++A + N
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEAAQKACEEAN 134
Query: 63 KSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEK 97
++ RI+ +A ++ +P +R ++ +E+
Sbjct: 135 NTFWHGRRIN--VAPRI---KASKPGNRDAMNQEE 164
Score = 64 (27.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 602 GVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVS 661
G DA +R + SL++ N+ +++ D L F + EG + V++ G
Sbjct: 155 GNRDAMNQEERTPTSSLYIGNIPYESTDAALNNLFQD--LEG-LKDVRIAVDRSTGW--P 209
Query: 662 MGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
GF +F VE+AT ++ L G L
Sbjct: 210 RGFAHADFKDVESATKAVEKVKLMELMGRTL 240
Score = 37 (18.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 339 SKGIAYVLYAIPESASRAIEV-LDNSIFQGRLLHVMPARHKKSSDKQELHN 388
SK + VL A+P S +R+ + + + R L + S +QE N
Sbjct: 23 SKRVVPVLAAVPASIARSTALPIARAFSVSRTLANVEENSGSSLPRQEQPN 73
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 35/92 (38%), Positives = 62/92 (67%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S K+ ++++ ++ +FV N+ Y A+ +E++ HF G+++ V I++DK T + KG AY
Sbjct: 55 SESLKEDKEDI-DARSIFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAY 113
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
V +A P ++A+ VL+ S+F+GR L V+P R
Sbjct: 114 VEFAEPSLVAQAL-VLNESVFRGRNLKVVPKR 144
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 131 (51.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 67/279 (24%), Positives = 118/279 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAI+
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAID 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXX--KASEASGNT 414
++ + R + V R K +++ EL + T +K + E G
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-- 212
Query: 415 KAWNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTN 471
K +L ++ T ++ G VS + + + +++ + G++ + +K +
Sbjct: 213 KYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272
Query: 472 AGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS 528
+F K D + R V L VKNL + L K F FG++ KV++
Sbjct: 273 ---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG 329
Query: 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F + G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEF---LPFGTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 116 (45.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +GR + +M ++ S K + N
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGN 100
Score = 115 (45.5 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L++ FG++ G LSVKV NGK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKY---GPALSVKVMTD-DNGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G ++G ++ + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 109 (43.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ F FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 102 (41.0 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E F K+G V ++ D D +SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ + V A+ KK + EL Q
Sbjct: 248 VDEMNGKDMNGKSMFVGRAQ-KKVERQTELKRKFEQ 282
Score = 101 (40.6 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + ++RL++ F + G K+M +GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FN 62
N
Sbjct: 251 MN 252
Score = 101 (40.6 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 51/197 (25%), Positives = 87/197 (44%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K + DE+ + K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 118 IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSIT 177
+ KV +D+ + F V R + A D + G D K S + +A K E+
Sbjct: 220 V-KVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNG--KDMNGK-SMFVGRAQKKVERQTE 275
Query: 178 LHVKSD--KSNVITDSQ 192
L K + K + IT Q
Sbjct: 276 LKRKFEQMKQDRITRYQ 292
Score = 87 (35.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIDKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 62 (26.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L + VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 51 (23.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 139 (54.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 66/277 (23%), Positives = 117/277 (42%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG A+V + E+A +AIE
Sbjct: 139 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 196
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXXKASEASGNTKA 416
++ + R + V R K +++ EL + T +K S ++
Sbjct: 197 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 254
Query: 417 WNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473
+L ++ ++ G VS K + ++ ++ + G+ + +K +
Sbjct: 255 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 314
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS-- 528
E+ K + + R V L +KNL + +L K F FGS+ KV+L
Sbjct: 315 ELKRKFEQL---KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 371
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 372 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 408
Score = 135 (52.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
SL ++ KTL++ V +P + F ++Y++++ +E +S G
Sbjct: 246 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 305
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+ ++A L+++ E + I R + +L++KNL+ DE LRK F
Sbjct: 306 AQKKV------ERQAELKRKFEQLKQERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPF 357
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G I S KV L++G+ S GFGF+ F S E AT ++ G I+ L + L
Sbjct: 358 ---GSITSAKVM--LEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 410
Query: 700 KKDEQ 704
K++ +
Sbjct: 411 KEERK 415
Score = 129 (50.5 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +++LR+ FS FG+++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 393
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ K L N Q
Sbjct: 394 NGRIVGSKPLYVALAQRKEER-KAHLTNQYMQ 424
Score = 111 (44.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + V ++ L++ FSQ G+ K+MR GKS+ F F+ + ++A +A++
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 61 FN 62
N
Sbjct: 291 MN 292
Score = 111 (44.1 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E FS+FG V ++ D K SKG +V Y E A++A
Sbjct: 229 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKA 287
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+E ++ G+++ V A+ KK + EL Q
Sbjct: 288 VEEMNGKEISGKVIFVGRAQ-KKVERQAELKRKFEQ 322
Score = 111 (44.1 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN + DE+L++ F + G+ LSVKV + +GK S GF
Sbjct: 220 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF---GKTLSVKVMRD-PSGK--SKGF 273
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ ++ E A ++ G + G + + K + Q K + ++ + + R
Sbjct: 274 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 330
Score = 98 (39.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL K + L D FS G I K++ ++G S+ +AF+ F T++ A++AI+ N
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 199
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 200 GMLLNDRKV 208
Score = 47 (21.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHN 388
+L+A +A RA++ ++ + +G+ + +M ++ S K + N
Sbjct: 97 MLHATGGTAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 140
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 99 (39.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 671
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 672 MNGMKLSGREIDV 684
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 164 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 223
Query: 61 FNKSYL 66
FN L
Sbjct: 224 FNGQLL 229
Score = 98 (39.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 129
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 130 VLNKHSLSGRPLKV 143
Score = 97 (39.2 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 297 ESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++GRL FV NL Y +L+E FS G V I+ DKD K S+GI V + E
Sbjct: 158 KAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK-SRGIGTVTF---EQ 213
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+ A++ + S+F G+LL P H K ++
Sbjct: 214 SIEAVQAI--SMFNGQLLFDRPM-HVKMDER 241
Score = 95 (38.5 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 667
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 668 ACRMMNGMKLSGREIDVRI 686
Score = 93 (37.8 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 61 FNKSYL 66
NK L
Sbjct: 131 LNKHSL 136
Score = 45 (20.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 601 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 637
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 99 (39.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 671
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 672 MNGMKLSGREIDV 684
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 164 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 223
Query: 61 FNKSYL 66
FN L
Sbjct: 224 FNGQLL 229
Score = 98 (39.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 129
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 130 VLNKHSLSGRPLKV 143
Score = 97 (39.2 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 297 ESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++GRL FV NL Y +L+E FS G V I+ DKD K S+GI V + E
Sbjct: 158 KAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK-SRGIGTVTF---EQ 213
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+ A++ + S+F G+LL P H K ++
Sbjct: 214 SIEAVQAI--SMFNGQLLFDRPM-HVKMDER 241
Score = 95 (38.5 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 667
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 668 ACRMMNGMKLSGREIDVRI 686
Score = 93 (37.8 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 61 FNKSYL 66
NK L
Sbjct: 131 LNKHSL 136
Score = 45 (20.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 601 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 637
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 99 (39.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 671
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 672 MNGMKLSGREIDV 684
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 164 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 223
Query: 61 FNKSYL 66
FN L
Sbjct: 224 FNGQLL 229
Score = 98 (39.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 129
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 130 VLNKHSLSGRPLKV 143
Score = 97 (39.2 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 297 ESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++GRL FV NL Y +L+E FS G V I+ DKD K S+GI V + E
Sbjct: 158 KAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK-SRGIGTVTF---EQ 213
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+ A++ + S+F G+LL P H K ++
Sbjct: 214 SIEAVQAI--SMFNGQLLFDRPM-HVKMDER 241
Score = 95 (38.5 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 667
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 668 ACRMMNGMKLSGREIDVRI 686
Score = 93 (37.8 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 61 FNKSYL 66
NK L
Sbjct: 131 LNKHSL 136
Score = 45 (20.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 601 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 637
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 99 (39.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 628 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 685
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 686 MNGMKLSGREIDV 698
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 178 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 237
Query: 61 FNKSYL 66
FN L
Sbjct: 238 FNGQLL 243
Score = 98 (39.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+G A V + + ES +A E
Sbjct: 85 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAE 143
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 144 VLNKHSLSGRPLKV 157
Score = 97 (39.2 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 297 ESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++GRL FV NL Y +L+E FS G V I+ DKD K S+GI V + E
Sbjct: 172 KAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK-SRGIGTVTF---EQ 227
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+ A++ + S+F G+LL P H K ++
Sbjct: 228 SIEAVQAI--SMFNGQLLFDRPM-HVKMDER 255
Score = 95 (38.5 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 629 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 681
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 682 ACRMMNGMKLSGREIDVRI 700
Score = 93 (37.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR A + F+ E+ ++A +
Sbjct: 85 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 144
Query: 61 FNKSYL 66
NK L
Sbjct: 145 LNKHSL 150
Score = 45 (20.9 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 615 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 651
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 108 (43.1 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + + LP+ +T++ +R F+ GEI KL+R K G+S + F+ + E++A A+
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 60 YFNKSYLDTCRISCEIARKVGD 81
FN L I AR D
Sbjct: 102 SFNGLRLQNKTIKVSYARPSND 123
Score = 102 (41.0 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 29/100 (29%), Positives = 45/100 (45%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L + LP T++E+R F+ G + +V DK T +S G +V Y E A RA+
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 361 DNSIFQGRLLHVMPARHKKSSDK-QELHNSTSQGTKTLKQ 399
+ Q + + V AR K L+ S + TL +
Sbjct: 104 NGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHE 143
Score = 95 (38.5 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
++ L+V +P + T EL F FG + I+ D T SKG+ +V + + A
Sbjct: 125 IKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADV 184
Query: 356 AIEVLDNSIFQG 367
AI+ L+ SI G
Sbjct: 185 AIKTLNGSIPSG 196
Score = 75 (31.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV NL + L + FS+FG + V I+ D T++ KG A+V + A A+ L
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDL-TQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 361 DNSIFQGRLLHVM 373
+ + G+ L V+
Sbjct: 435 NGTNLAGKTLQVV 447
Score = 74 (31.1 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 606 ADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFG 665
A + P LFV NL+ T D L + F + G I++VK+ + L G+
Sbjct: 364 ATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQF---GAIVNVKILRDLTQQ---CKGYA 417
Query: 666 FIEFDSVETATNVCRDLQGTILDGHAL 692
F+ + A N L GT L G L
Sbjct: 418 FVSMSNYTEAYNAMLSLNGTNLAGKTL 444
Score = 44 (20.5 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 472 AGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
A +S+L A + + V NL D+ + L ++F +FG++ V
Sbjct: 351 AHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNV 403
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 119 (46.9 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 258 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 310
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 311 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 343
Score = 115 (45.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 321
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 322 NGRIVATKPLYVALAQRKE 340
Score = 114 (45.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 54/212 (25%), Positives = 91/212 (42%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV-LSQSST--SKGNQKNDAVVG-- 587
A V F +P +A A + + KG P+ + W+ D L +S + K V
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFE 114
Query: 588 -EHDAKRALLEQQLEGV--TDADIDPDRVESR---------------SLFVKNLNFKTCD 629
+ A+RA+ +++ G+ D + R +SR ++++KN D
Sbjct: 115 TQEAAERAI--EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDD 172
Query: 630 ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG 689
E L+ FG K G LSVKV ++GK S GFGF+ F+ E A ++ G L+G
Sbjct: 173 ERLKDLFG---KFGPALSVKVMTD-ESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNG 226
Query: 690 HALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
+ + K + Q K + ++ + R
Sbjct: 227 KQIYVGRAQKKVERQTELKRKFEQMKQDRITR 258
Score = 109 (43.4 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 219 MNGKELNGKQIYVGRAQK 236
Score = 108 (43.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDK 383
+ + +G+ + +M ++ S K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRK 95
Score = 102 (41.0 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 215
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 216 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 250
Score = 60 (26.2 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 58 (25.5 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 24/113 (21%), Positives = 56/113 (49%)
Query: 17 LRDFFSQKG-EITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEI 75
+R +SQ+ + + ++ ++G S+ + F+ F T++ AE AI+ N L+ ++
Sbjct: 82 VRIMWSQRDPSLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 140
Query: 76 --ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTE 123
+RK + + + ++ +K E +DE+ L K G +++ +T+
Sbjct: 141 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 193
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 155 (59.6 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 40/134 (29%), Positives = 75/134 (55%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
D +I+D+ H G++ + G + SKD++ + ++FV +P T TEDEL++
Sbjct: 74 DKVIEDT-HVINGKQVEIKRTIPKGAGGNQSKDIKTK-----KIFVGGIPSTVTEDELKD 127
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F+K+GNV E ++ D +T RS+G +V++ +S EV+D + +G ++ + +
Sbjct: 128 FFAKYGNVVEHQVIRDHETNRSRGFGFVIF---DSE----EVVDELLSKGNMIDMADTQV 180
Query: 378 --KKSSDKQELHNS 389
KK+ K+ L+ S
Sbjct: 181 EIKKAEPKKSLNRS 194
Score = 73 (30.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
+I + L K T F + GEITD+ +MR + G+ R F FI F ++ I+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 131 (51.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 208
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 269 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 102 (41.0 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 102 (41.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 131 (51.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 208
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 269 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 102 (41.0 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 102 (41.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 131 (51.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 208
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 269 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 102 (41.0 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 102 (41.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 131 (51.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 208
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 269 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 102 (41.0 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 102 (41.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 163 (62.4 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 115 (45.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 34/88 (38%), Positives = 44/88 (50%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSF---GPISEVVVVKDRETQR--SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A+N R + G LDG + ++ HA K
Sbjct: 59 HASNAMRAMNGESLDGRQI--RVDHAGK 84
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 163 (62.4 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 35/97 (36%), Positives = 57/97 (58%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ G+LFV L + TE+ L + FSK+G V+EV +V D+++KRS+G +V + PE A A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
+ ++ GR + V A K S+D++ + S G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG-KSSNDRRGGYRGGSSG 99
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 131 (51.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 208
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 269 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 111 (44.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 109 (43.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 102 (41.0 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 102 (41.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 60 (26.2 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 52 (23.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>ZFIN|ZDB-GENE-070122-4 [details] [associations]
symbol:rbm45 "RNA binding motif protein 45"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
NextBio:20889217 Uniprot:B0S522
Length = 467
Score = 150 (57.9 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 41/137 (29%), Positives = 67/137 (48%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S S +DV+ E L R+FV +P T TED+L+E F +G++ I+ +K T SKG+ Y
Sbjct: 99 SGSHRDVEDEELT--RIFVM-IPKTFTEDDLKETFKVYGDIEYAIIIRNKTTGDSKGLGY 155
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHN--STSQGTKTLKQXXX 402
V + P A++A+E D + R + P S+D N +T T L
Sbjct: 156 VRFHKPSQAAKAVENCDKTF---RAIIAEPRTKNSSADNDYFSNPRTTEHSTSELGSSSY 212
Query: 403 XXXKASEASGNTKAWNS 419
+ S + ++++S
Sbjct: 213 AFAQESSSYSAAESYSS 229
Score = 123 (48.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 28/93 (30%), Positives = 53/93 (56%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ RLF+ + TED +RE F+ FG + ++ +V DK TK SKG+A++ +A A A+
Sbjct: 16 NSRLFLVTSK-SITEDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQACTAM 74
Query: 358 EVLDNS-IFQG-RLLHVMPARHKKSSDKQELHN 388
E + + +G + + V A+ + S +++ +
Sbjct: 75 EEMHGRCLAEGTKPIKVFIAQSRSSGSHRDVED 107
Score = 76 (31.8 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 10 KYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
K +TED +R+ F+ GEI D +++ K K S+ AFI F +A A++
Sbjct: 25 KSITEDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQACTAME 75
Score = 46 (21.3 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703
++ +L G+NV G+I++ +A + + G +++G + + L K+E
Sbjct: 410 IEVYLVPGRNV----GYIKYADRRSAHDAIDTMHGKVVNGVKMKVMLADPPKEE 459
Score = 40 (19.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 511 LAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPL 560
L +F +FGSL +V L + + + + + A A + K GV +
Sbjct: 399 LEDVFCRFGSLIEVYLVPGRNVGYIKYADRRSAHDAIDTMHGKVVNGVKM 448
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 129 (50.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L + L + T+D LREHF K+G +++ ++ D TKRS+G +V Y+ E A+
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELH 387
+ + GR++ A ++ S K H
Sbjct: 69 RPHKV-DGRVVEPKRAVSREDSVKPGAH 95
Score = 89 (36.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 24/89 (26%), Positives = 49/89 (55%)
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
+ +FV + T + NLR +F ++ G+I +++V + ++GK GF F+ FD +T
Sbjct: 99 KKIFVGGIKEDTEEYNLRDYFEKY---GKIETIEVMEDSQSGKK--RGFAFVTFDDHDTV 153
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ D + I++GH ++ +K++ Q
Sbjct: 154 DKIV-DQKYHIINGHNCEVKKALSKQEMQ 181
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 109 (43.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 288 SKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLY 347
S VQ E E LF+ N+P + EL F FG V + VDK T SK +V Y
Sbjct: 338 SSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSY 397
Query: 348 AIPESASRAIEVLDNSIFQGRLLHVMPAR 376
+A AI++++ G+ L V R
Sbjct: 398 DSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
Score = 103 (41.3 bits), Expect = 6.8e-11, Sum P(3) = 6.8e-11
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
+ E ES +LFV +P +E +L F +F V EV+I+ DK T+ S+G ++L E
Sbjct: 11 KNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSRE 70
Query: 352 SASRAIEVLDN 362
A + + N
Sbjct: 71 EADKLVNACHN 81
Score = 95 (38.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 290 DVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAI 349
D + E LE +LFV LP +E E++ FSK+G + ++ I+ + SKG A++ Y
Sbjct: 98 DGELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ-QTSKGCAFLKYET 155
Query: 350 PESASRAIEVLD 361
E A A+E ++
Sbjct: 156 KEQAVSAMESIN 167
Score = 89 (36.4 bits), Expect = 6.8e-11, Sum P(3) = 6.8e-11
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 488 DG-LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL-DKVIL----PSTKTLALVVFLEPV 541
DG L+R H V LP + SE E+ +F K+G++ D IL ++K A + +
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKE 157
Query: 542 EAAAAFKGLAYK-RYKG--VPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHD 590
+A +A + + K + +G VPL ++WA ++ + + Q + A +G D
Sbjct: 158 QAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGD 209
Score = 89 (36.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ V LPK V+E ++ FS+ G I D +++R S+ AF+ + T+++A A++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 62 N 62
N
Sbjct: 167 N 167
Score = 83 (34.3 bits), Expect = 6.8e-11, Sum P(3) = 6.8e-11
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E +LF+ N+ + D+ L F G +LS KV + VS FGF+ +DS
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSF---GIVLSAKV--FVDKATGVSKCFGFVSYDSQA 401
Query: 674 TATNVCRDLQGTILDGHALILQL 696
A N + G L G L +QL
Sbjct: 402 AAQNAIDMMNGRHLGGKKLKVQL 424
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 109 (43.4 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +FV+NL + L + S FGN+ ++V D++ SKG +V + E+A RAI+
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ 384
++ + GR + V + +K + +
Sbjct: 157 KMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 91 (37.1 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFPNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQG 684
GF+ F+ E A ++ G
Sbjct: 234 GFVSFERHEDAQKAVDEMNG 253
Score = 62 (26.9 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R S +A++ F+ ++AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMN 73
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 162 (62.1 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 39/128 (30%), Positives = 63/128 (49%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LF+ L + T+D LRE FS++G + E +V D+DT RS+G +V +A A A+
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNS 419
++N F GR++ V K+S++ N QG + A G T +
Sbjct: 63 MNNQEFDGRIIRV-----DKASERPAARNGGFQGRGGYNSPADGGYRGGGAGG-TLPYLP 116
Query: 420 LFMRPDTV 427
++RP V
Sbjct: 117 WYLRPPHV 124
Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
+++ + L + T+D LR+ FS+ G I +A +++ +D +SR F F+ F +E EA+ A+
Sbjct: 2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61
Query: 60 YFNKSYLD 67
N D
Sbjct: 62 AMNNQEFD 69
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 131 (51.2 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 57/216 (26%), Positives = 94/216 (43%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGL 550
K +V+ +KNL D + L +F +FG P+ L++ V + + F +
Sbjct: 188 KEFTNVY-IKNLGEDMDDERLQDLFSRFG-------PA---LSVKVMTDESGKSKGFGFV 236
Query: 551 AYKRYKGVPLYLEWAPSDVLSQSSTSKGN-QKNDAVVGEHDAKRALLEQQLEGVTDADID 609
+++R++ ++ L+ G QK E K ++Q + D
Sbjct: 237 SFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQD 296
Query: 610 PD-RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+
Sbjct: 297 RSVRCQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVT--MEGGR--SKGFGFVC 349
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
F S E AT ++ G I+ L + L K++ Q
Sbjct: 350 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 385
Score = 125 (49.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 72/284 (25%), Positives = 111/284 (39%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +FV+NL + L + FS FGN+ +V D++ SKG +V + E A RAIE
Sbjct: 99 GNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGT----KTLKQXXXXXXKASEASGN 413
++ R + V R K D+Q EL + T K L + S
Sbjct: 157 KMNGMFLNDRKVFV--GRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRF 214
Query: 414 TKAWNSLFMRPDTVVEN----IA-RKHGVSKSDLLDREANDL-AVRIALGETQVIAETKK 467
A + M ++ ++ +H ++ + + DL +I +G Q E +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 468 ALTNA-GVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--K 523
L + G + D R V L VKNL + L K F FG++ K
Sbjct: 275 ELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 524 VILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
V + +K V F P EA A + + PLY+ A
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 378
Score = 115 (45.5 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ + ++ RSKG +V ++ PE A++A+ +
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEM 363
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ I + L+V A+ K+ + L N Q
Sbjct: 364 NGRIVATKPLYVALAQRKEER-QAHLSNQYMQ 394
Score = 113 (44.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KNL + + ++RL+D FS+ G K+M + GKS+ F F+ F ++A +A+
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKDLNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 287 SSKDVQQEV----LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
S +D Q E+ E ++++NL ++ L++ FS+FG V ++ D+ K SKG
Sbjct: 175 SRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGK-SKGF 233
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+V + E A +A++ ++ G+ ++V A+ KK + EL + Q
Sbjct: 234 GFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQ-KKVERQTELKHKFGQ 282
Score = 105 (42.0 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I VKNL + + L D FS G I K++ ++G S+ + F+ F T++EAE AI+ N
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMN 159
Query: 63 KSYLDTCRI 71
+L+ ++
Sbjct: 160 GMFLNDRKV 168
Score = 103 (41.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L TE L E FS G + + + D+ T+RS G A V + E A RA++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 97 (39.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 606 ADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFG 665
A++ E ++++KNL DE L+ F G LSVKV ++GK S GFG
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQDLFSRF---GPALSVKVMTD-ESGK--SKGFG 234
Query: 666 FIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKK 708
F+ F+ E A ++ G L+G + + K + Q K
Sbjct: 235 FVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELK 277
Score = 93 (37.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FVKNL+ + L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEEAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
+ G L+ + + +++D Q A + K T + ++N+
Sbjct: 153 RAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGA-RAKEFTNVYIKNL 198
Score = 59 (25.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKYFN 62
V +L VTE L + FS G I ++ R + + S +A + F+ ++AE A+ N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMN 73
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 117 (46.2 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L V LP T++EL+ F G + +V DK T +S G +V Y P+ A +AI L
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLKQ 399
+ Q + + V AR +S + L+ S T T K+
Sbjct: 130 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 169
Score = 110 (43.8 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 101 (40.6 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS+FG + I+VD+ T S+G+ ++ + A
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEE 210
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 211 AIKGLN 216
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E+ L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 66 (28.3 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F +FG + ++++ ++ + + F VEA A KGL
Sbjct: 158 VSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTS 576
++ G P+ +++A PS SQ+ S
Sbjct: 218 QKPPGATEPITVKFANNPSQKSSQALLS 245
Score = 60 (26.2 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 30/97 (30%), Positives = 42/97 (43%)
Query: 600 LEGVTD-ADID-PDRVESR-SLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLK 655
++GVT A I+ P + +FV NL DEN L + FG G + +VKV +
Sbjct: 286 IDGVTSLAGINLPAHAGTGWCIFVYNLA-PDADENVLWQMFGPF---GAVTNVKVIRDFN 341
Query: 656 NGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
K GFGF+ + + A L G L L
Sbjct: 342 TNK--CKGFGFVTMTNYDEAAVAIASLNGYRLGDRVL 376
Score = 60 (26.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F + GRI++ ++ G VS G GFI FD
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQF---GRIITSRILVDQVTG--VSRGVGFIRFDRR 205
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 206 VEAEEAIKGLNG 217
Score = 53 (23.7 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 309 VYNLAPDADENVLWQMFGPFGAVTNV 334
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 161 (61.7 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 113 (44.8 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 34/88 (38%), Positives = 43/88 (48%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T + L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDERALEDHFSSF---GPISEVVVVKDRETQR--SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A+N R + G LDG + ++ HA K
Sbjct: 59 HASNAMRAMNGESLDGRQI--RVDHAGK 84
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 161 (61.7 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 110 (43.8 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSF---GPISEVVVVKDRETQR--SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A++ R + G LDG + ++ HA K
Sbjct: 59 HASDAMRAMNGESLDGRQI--RVDHAGK 84
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 161 (61.7 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 110 (43.8 bits), Expect = 0.00016, P = 0.00016
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSF---GPISEVVVVKDRETQR--SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A++ R + G LDG + ++ HA K
Sbjct: 59 HASDAMRAMNGESLDGRQI--RVDHAGK 84
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 135 (52.6 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 32/120 (26%), Positives = 62/120 (51%)
Query: 279 VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
+D N K + + +S ++FV +P+ E ELRE+F KFG V+EV ++ D + +R
Sbjct: 120 LDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 179
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ-GTKTL 397
+G ++ + +S +A+ + + I G+ + V A + S + SQ G++ +
Sbjct: 180 PRGFGFITFEDEQSVDQAVNMHFHDIM-GKKVEVKRAEPRDSKSQAPGQPGASQWGSRVV 238
Score = 117 (46.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 32/116 (27%), Positives = 58/116 (50%)
Query: 270 GEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVH 329
G E +G P + S S++ Q L +LFV L ++ T++ LR +FS++G V +
Sbjct: 31 GPEGTSGA---PSHSSVSARKAAQAALR--KLFVGGLDWSTTQETLRSYFSQYGEVVDCV 85
Query: 330 IVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQE 385
I+ DK T +S+G +V + P + +++ GR ++ P + SD +
Sbjct: 86 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTL-DGR--NIDPKQKGPRSDNSK 138
Score = 85 (35.0 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFR 49
++ V L T++ LR +FSQ GE+ D +M+ K +SR F F+ F+
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 104
Score = 65 (27.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 486 KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
++D K SN +F V +P++ E EL + F KFG + +V++
Sbjct: 133 RSDNSK-SNKIF-VGGIPHNCGETELREYFKKFGVVTEVVM 171
Score = 56 (24.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D +S +FV + + LR++F K G + V + + K GFGFI F+
Sbjct: 135 DNSKSNKIFVGGIPHNCGETELREYFK---KFGVVTEVVMIYDAE--KQRPRGFGFITFE 189
Query: 671 ---SVETATNV-CRDLQG 684
SV+ A N+ D+ G
Sbjct: 190 DEQSVDQAVNMHFHDIMG 207
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 131 (51.2 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 30/112 (26%), Positives = 60/112 (53%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
+ K + + +S ++FV +P+ E ELRE+F KFG V+EV ++ D + +R +G ++
Sbjct: 79 NQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 138
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ-GTKTL 397
+ +S +A+ + + I G+ + V A + S + SQ G++ +
Sbjct: 139 FEDEQSVDQAVNMHFHDIM-GKKVEVKRAEPRDSKSQAPGQPGASQWGSRVV 189
Score = 110 (43.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIP 350
E G+LFV L ++ T++ LR +FS++G V + I+ DK T +S+G +V + P
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 85 (35.0 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFR 49
++ V L T++ LR +FSQ GE+ D +M+ K +SR F F+ F+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 65 (27.9 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 486 KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
++D K SN +F V +P++ E EL + F KFG + +V++
Sbjct: 84 RSDNSK-SNKIF-VGGIPHNCGETELREYFKKFGVVTEVVM 122
Score = 57 (25.1 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 600 LEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKN 659
L+G D +S +FV + + LR++F K G + V + + K
Sbjct: 75 LDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFK---KFGVVTEVVMIYDAE--KQ 129
Query: 660 VSMGFGFIEFD---SVETATNV-CRDLQG 684
GFGFI F+ SV+ A N+ D+ G
Sbjct: 130 RPRGFGFITFEDEQSVDQAVNMHFHDIMG 158
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 132 (51.5 bits), Expect = 8.8e-08, Sum P(3) = 8.8e-08
Identities = 41/175 (23%), Positives = 80/175 (45%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV LP +A D+L E FS+ G V + +V +K +K +G YV +++ E RA++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 361 DNSIFQGRLLHVMPARHK-KSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNS 419
+ F+G + V A+ K ++ K+ N ++ K K+ K ++ N
Sbjct: 66 --TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPK--KEPKHKKAKVADKKARLIIRNL 121
Query: 420 LFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV 474
F + ++ + +G + ++ + A + + + E KAL A +
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANM 176
Score = 118 (46.6 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 264 SIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFG 323
++ S ED E V P + K + +V E +F+RNL + + E+ L E +FG
Sbjct: 292 TVDSESSAEDQEDEDV-PVSEKKKRK-LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFG 349
Query: 324 NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
++ V +V+ DT+ SKG A+ + E+A + +
Sbjct: 350 DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 383
Score = 117 (46.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 60/261 (22%), Positives = 109/261 (41%)
Query: 283 NPSSSSKDVQQEVLES-GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
+P K + +V + RL +RNL + +ED+L+ F+ +G V EV+I D K +G
Sbjct: 97 SPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKM-RG 155
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHV---------MPARH------KKSSDKQEL 386
A+V + A +A++ + +GR + V A+H KKSSD++
Sbjct: 156 FAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKP- 214
Query: 387 HNSTSQGTKTLKQXXXXXXKASEAS-GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDR 445
S + + +Q + + S + + S P +V + ++ +S D
Sbjct: 215 KESGKKNCRVEEQVEDSDDEEDDDSHDDEEERESTIASPVSVHKRAVKRAAPEESIEEDD 274
Query: 446 --EANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLP 503
E +DL + + + A +V E+ + VF ++NL
Sbjct: 275 SYEDSDLEEGGSSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGKTVF-IRNLS 333
Query: 504 YDSSEGELAKMFGKFGSLDKV 524
+DS E L ++ +FG L V
Sbjct: 334 FDSEEEALGEVLQQFGDLKYV 354
Score = 107 (42.7 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILPST-----KTLALVVFLEPVEAAAAFKGLAY 552
+++NL + SE +L +F +G++ +V +P + A V F +EA A KG
Sbjct: 117 IIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANM 176
Query: 553 KRYKGVPLYLEWAPS-DVL--SQSSTSKGNQKN-DAVVGEHDAKRALLEQQLEGVTDADI 608
K KG + ++WA + D +Q +++ G +K+ D E K +E+Q+E D +
Sbjct: 177 KEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDDEED 236
Query: 609 D 609
D
Sbjct: 237 D 237
Score = 106 (42.4 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 37/131 (28%), Positives = 64/131 (48%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ ++NL +ED L+ F+ G + + + + DGK R FAF+ F+ EA +A+K
Sbjct: 114 ARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKG 173
Query: 61 FNKSYLD--TCRISCEIAR-KVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
N + T + +A+ K D S +KK S D K P + K+ +
Sbjct: 174 ANMKEIKGRTVAVDWAVAKDKYKDAQHA---SAPGVKK----SSDRK-PKESGKKN-CRV 224
Query: 118 IEKVTENDDPQ 128
E+V ++DD +
Sbjct: 225 EEQVEDSDDEE 235
Score = 86 (35.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 29/113 (25%), Positives = 50/113 (44%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKS-RQFAFIGFRTEQEAEEAIKYFNK 63
V LP D+L + FSQ G + ++ K K+ R F ++ F ++ + A+K
Sbjct: 8 VGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT 67
Query: 64 SYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKK 116
+ C+I +A+K R S+ + K E S ++ AK +KK
Sbjct: 68 --FEGCKIDVTVAKK-----KLRNKSKETRKNENAESPKKEPKHKKAKVADKK 113
Score = 75 (31.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 41/161 (25%), Positives = 70/161 (43%)
Query: 568 DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDAD-----IDPDRVESRSLFVKN 622
D S +G D G D++ + +Q+ E V ++ + D E +++F++N
Sbjct: 274 DSYEDSDLEEGGSSYDE--GTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGKTVFIRN 331
Query: 623 LNFKTCDENLRKHFGEHIKE-GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN--VC 679
L+F + +E L GE +++ G + V+V H S G F +F + E A
Sbjct: 332 LSFDSEEEAL----GEVLQQFGDLKYVRVVLHPDTEH--SKGCAFAQFMTQEAAQKCLAA 385
Query: 680 RDLQ----GTILDGHALILQLCHAKKDEQVVKKAEKDKSST 716
L+ G LDG L + L +DE + +K K T
Sbjct: 386 ASLEAEGGGLKLDGRQLKVDLA-VTRDEAAKLQTKKVKKPT 425
Score = 62 (26.9 bits), Expect = 8.8e-08, Sum P(3) = 8.8e-08
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLD--KVIL-PSTKTLALVVFLEPVEAAAAFKGLA 551
VF ++NL +DS E L ++ +FG L +V+L P T+ F + + AA K LA
Sbjct: 327 VF-IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 384
Score = 57 (25.1 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 25/75 (33%), Positives = 34/75 (45%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIK--EG-RILSVKVKKHLK--NGK--NVSMGFG 665
V L + NL D+ LRK E + +G RI +V + LK +GK S+G+
Sbjct: 474 VSQTRLCLHNLPKAVDDKQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKGQSLGYA 533
Query: 666 FIEFDSVETATNVCR 680
F EF E A R
Sbjct: 534 FAEFQKHEHALRALR 548
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 106 (42.4 bits), Expect = 0.00092, P = 0.00092
Identities = 33/88 (37%), Positives = 43/88 (48%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSF---GPISEVVVVKDRETQR--SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A+ R + G LDG + ++ HA K
Sbjct: 59 HASVAMRAMNGESLDGRQI--RVDHAGK 84
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+ G+LF+ L + E+ L + FSK+G +SEV +V D++TKRS+G +V + P+ A A
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
+ ++ GR + V A K S D++ + S G
Sbjct: 63 MMAMNGKAVDGRQIRVDQAG-KSSGDRRGGYRGGSSG 98
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 131 (51.2 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 208
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 269 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 119 (46.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 342
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L ATE L E FS G + + + D T+RS G AYV + P A RA++ +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHN 388
+ + +G+ + +M ++ S K + N
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 109 (43.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 251 MNGKELNGKQIYVGRAQK 268
Score = 107 (42.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 233
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 102 (41.0 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 247
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 248 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 282
Score = 102 (41.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 118 IEKVTE 123
++ +T+
Sbjct: 220 VKVMTD 225
Score = 89 (36.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV +NG S G+GF+ F++ E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCD-ENG---SKGYGFVHFETQEAAE 152
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRN 722
+ G +L+ + + ++K+ + A + K T + ++N
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-RAKEFTNVYIKN 197
Score = 56 (24.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
V +L TE L + FS G I ++ R +S +A++ F+ +AE A+ N
Sbjct: 15 VGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Score = 53 (23.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVI----LPSTKTL--ALVVFLEPVEAAAAFKGLAY 552
V +L D++E L + F G + + + + ++L A V F +P +A A + +
Sbjct: 15 VGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 74
Query: 553 KRYKGVPLYLEWAPSDVLSQSSTSKGN 579
KG P+ + W+ D S + GN
Sbjct: 75 DVIKGKPVRIMWSQRDP-SLRKSGVGN 100
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FVRNLP+ T L++ F++ G+V ++ + + +SKG V + PE A RA +
Sbjct: 667 QIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRM 724
Query: 360 LDNSIFQGRLLHV 372
++ GR + V
Sbjct: 725 MNGMKLSGREIDV 737
Score = 98 (39.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + V NL V +L++ FS G + A ++ KDGKSR + F EA +AI
Sbjct: 217 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 276
Query: 61 FNKSYL 66
FN L
Sbjct: 277 FNGQLL 282
Score = 97 (39.2 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 297 ESGRL----FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++GRL FV NL Y +L+E FS G V I+ DKD K S+GI V + E
Sbjct: 211 KAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK-SRGIGTVTF---EQ 266
Query: 353 ASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+ A++ + S+F G+LL P H K ++
Sbjct: 267 SIEAVQAI--SMFNGQLLFDRPM-HVKMDER 294
Score = 95 (38.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV+NL F + L+ F E G +L +K ++NGK S G G ++F+S E A
Sbjct: 668 IFVRNLPFDFTWKMLKDKFNEC---GHVLYADIK--MENGK--SKGCGVVKFESPEVAER 720
Query: 678 VCRDLQGTILDGHALILQL 696
CR + G L G + +++
Sbjct: 721 ACRMMNGMKLSGREIDVRI 739
Score = 89 (36.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
R + N+P V L+D +K GE+T +L+ +GKSR + F+ E+ ++A +
Sbjct: 124 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEV 183
Query: 61 FNKSYL 66
NK L
Sbjct: 184 LNKHSL 189
Score = 84 (34.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 300 RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
R F+ N+P+ L++ K G V+ V +++D + K S+ V + + ES +A E
Sbjct: 124 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRVSVVVEFKMEESMKKAAE 182
Query: 359 VLDNSIFQGRLLHV 372
VL+ GR L V
Sbjct: 183 VLNKHSLSGRPLKV 196
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
+ G G+ R V+NLP+D + L F + G
Sbjct: 654 AGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG 690
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 99 (39.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 301 LFVRNLPYTATEDELREHFSK-FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+FV +L T+ L + F +G+V +V+D+ T RSKG +V +A RA+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
++ R + + PA +K + Q +QG
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQG 249
Score = 91 (37.1 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +L +++ E+ + F+Q GE T AK++R K G+S + FI F + AE ++ +N
Sbjct: 64 IGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYN 122
Score = 84 (34.6 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV L T+DEL+ F +FG + +H+ + K +V YA SA A+ VL
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP----GKRCGFVQYANKASAEHALSVL 315
Query: 361 DNSIFQGRLLHVMPARH-KKSSDKQE 385
+ + G+ + + R K SD+ +
Sbjct: 316 NGTQLGGQSIRLSWGRSPNKQSDQAQ 341
Score = 80 (33.2 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 598 QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNG 657
Q +G D DP+ ++FV L+ D+ L+ FG+ G +L VK+ G
Sbjct: 245 QNTQGANAGDNDPNNT---TIFVGGLDANVTDDELKSIFGQF---GELLHVKIPP----G 294
Query: 658 KNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694
K GF+++ + +A + L GT L G ++ L
Sbjct: 295 KRC----GFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Score = 80 (33.2 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 31/117 (26%), Positives = 46/117 (39%)
Query: 463 AETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD 522
A K AL + + +AG D +N V L + ++ EL +FG+FG L
Sbjct: 231 AANKNALPMQPAMYQNTQGANAGDNDP---NNTTIFVGGLDANVTDDELKSIFGQFGELL 287
Query: 523 KVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
V +P K V + A A L + G + L W S QS ++ N
Sbjct: 288 HVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPN-KQSDQAQWN 343
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV+N +D+L+E FS++G V ++ D K SKG +V Y E+A +A+ L
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGK-SKGFGFVRYETHEAAQKAVLDL 259
Query: 361 DNSIFQGRLLHVMPARHK 378
G++L+V A+ K
Sbjct: 260 HGKSIDGKVLYVGRAQKK 277
Score = 108 (43.1 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D+ ++FVKN D+ L++ F E+ G SVKV + +GK S GFGF+ ++
Sbjct: 194 DKATFTNVFVKNFGDDMDDDKLKELFSEY---GPTESVKVIRD-SSGK--SKGFGFVRYE 247
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVK 707
+ E A DL G +DG L + KK E++ +
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQ-KKIERLAE 283
Score = 105 (42.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 30/123 (24%), Positives = 57/123 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN + +D+L++ FS+ G K++R GKS+ F F+ + T + A++A+
Sbjct: 199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLD 258
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
+ +D + A+K + + R+ + KE S P+ E EK
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIE-RLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEK 317
Query: 121 VTE 123
+ E
Sbjct: 318 LKE 320
Score = 102 (41.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/72 (26%), Positives = 43/72 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++++NL T +++L+E FS FG++S ++V+ + KG + ++ E A++A++ +
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEM 361
Query: 361 DNSIFQGRLLHV 372
+ I + L V
Sbjct: 362 NGRIVGSKPLQV 373
Score = 90 (36.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+++KNL+ DE L++ F G I KV + GK GFG I F S E AT
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSF---GSISRAKVMVEVGQGK----GFGVICFSSFEEATK 356
Query: 678 VCRDLQGTILDGHALILQLCHAKK 701
++ G I+ L + L A++
Sbjct: 357 AVDEMNGRIVGSKPLQVTLGQARR 380
Score = 81 (33.6 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G P+ + K +++ L++ L+V +L TED L + F G + I D T+ G
Sbjct: 4 GEPNPAGK--KKKYLKAA-LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG 60
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373
YV + P A A+ ++ + G+ +M
Sbjct: 61 YGYVNFRFPADAEWALNTMNFDLINGKPFRLM 92
Score = 80 (33.2 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L FS FG++ +V D + SKG AYV + +A+RAI
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIW 163
Query: 359 VLDNSIFQGRLLHV 372
++ R ++V
Sbjct: 164 HMNGVRLNNRQVYV 177
Score = 66 (28.3 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L FS G I K++ +G S+ +A++ F + A AI + N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Score = 53 (23.7 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQ-FAFIGFRTEQEAEEAIKYFN 62
V +L VTED L F G + ++ R +S + ++ FR +AE A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
Score = 49 (22.3 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 495 HVFLVKNLPYDSSEGELAKMFGKFGSLD--KVILPST-KTLAL-VVFLEPVEAAA-AFKG 549
+VF VKN D + +L ++F ++G + KVI S+ K+ V E EAA A
Sbjct: 200 NVF-VKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLD 258
Query: 550 LAYKRYKGVPLYL 562
L K G LY+
Sbjct: 259 LHGKSIDGKVLYV 271
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDK 523
+KNL + +L + F FGS+ +
Sbjct: 306 IKNLDETIDDEKLKEEFSSFGSISR 330
Score = 41 (19.5 bits), Expect = 9.8e-05, Sum P(3) = 9.7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 488 DGLKRSN--HVFLVKNLPYDSSEGELAKMFGKFGSL 521
D L++S ++F +KNL L +F FGS+
Sbjct: 98 DRLRKSGIGNIF-IKNLDKSIDNRALFYLFSAFGSI 132
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 134 (52.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 36/119 (30%), Positives = 63/119 (52%)
Query: 271 EEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHI 330
E +G+I+DP +QE ++ ++FV +P TE+E R F++FG V + +
Sbjct: 224 EHHLDGKIIDPKRAIPRE---EQE--KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATL 278
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS 389
++DKDT R +G +V Y E+ S A+E + + +H P K+++ K L +S
Sbjct: 279 MMDKDTGRPRGFGFVTY---ENES-AVEATMSQPYI--TIHGKPVEVKRATPKASLRDS 331
Score = 95 (38.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 13 TEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLD 67
T+D LRD+F Q GE+ D +MR + G+SR F F+ F+ + E + + +LD
Sbjct: 175 TDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLD 228
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 132 (51.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 65/285 (22%), Positives = 120/285 (42%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S +D +G +F++NL + + FS FGN+ + +D+D SKG +V
Sbjct: 108 SQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGF-SKGYGFVH 166
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKT-LKQXXXXXX 405
+ E+A AI+ ++ + G+ + V + + ++ EL + Q T +K
Sbjct: 167 FETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR-ELGETAKQFTNVYVKNFGDHYN 225
Query: 406 KASEASGNTKAWNSLFMRPDTVVENIARKHG-VSKSDLLDREANDLAVRIALGE-TQVIA 463
K + K N TV E ++ G V+ ++ + E A+ + E T +
Sbjct: 226 KETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL 284
Query: 464 ETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD 522
+A + + ++ K + +++ V L VKNL + L K F +G++
Sbjct: 285 HVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNIT 344
Query: 523 --KVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562
KV+ +K V F +P EA +A + K PLY+
Sbjct: 345 SAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 125 (49.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL T +D L++ F +GN++ ++ D++ RSKG +V + PE A+ A+ +
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG-RSKGFGFVCFEKPEEATSAVTEM 377
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ 384
++ + + L+V A+ K+ Q
Sbjct: 378 NSKMVCSKPLYVAIAQRKEDRRAQ 401
Score = 108 (43.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN + ++ L F++ G IT ++M T +GKS+ F F+ F +EAE A++
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQA 271
Query: 61 FNKSYLDTCRISCEIAR 77
+ S ++ + + R
Sbjct: 272 LHDSTIEGTDLKLHVCR 288
Score = 108 (43.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+L+VKNL+ D+ L+K F + G I S KV +NG+ S GFGF+ F+ E AT
Sbjct: 318 NLYVKNLDETVDDDGLKKQFESY---GNITSAKVMTD-ENGR--SKGFGFVCFEKPEEAT 371
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ ++ ++ L + + K+D +
Sbjct: 372 SAVTEMNSKMVCSKPLYVAIAQRKEDRR 399
Score = 101 (40.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + + D FS G I K+ +DG S+ + F+ F TE+ A+ AI+ N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Score = 96 (38.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/102 (34%), Positives = 50/102 (49%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKN E L K F K G I S +V GK S GFGF+ F + E A
Sbjct: 214 NVYVKNFGDHYNKETLEKLFA---KFGNITSCEVMT--VEGK--SKGFGFVAFANPEEAE 266
Query: 677 NVCRDLQGTILDGHALILQLCHA-KKDE---QVVKKAEKDKS 714
+ L + ++G L L +C A KK E ++ KK E+ K+
Sbjct: 267 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKA 308
Score = 52 (23.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKYFN 62
V +L V E L + FS G + ++ R + S +A++ F+ +AE A+ N
Sbjct: 36 VGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 158 (60.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++FV LP++ ++ L+ HFS+FGN+ + ++V+D+ TKRSKG +V + ES AI
Sbjct: 5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64
Query: 360 LDNSIFQGRLLHVMPAR---HKKSSDKQE 385
DN I GR L V A K+++ KQE
Sbjct: 65 -DNEI-NGRKLVVNEALAKDFKENTPKQE 91
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 50/175 (28%), Positives = 81/175 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIKYF 61
+ V +L V +LR+ F G+++DAK++R T KS+ + F+ + +EAE AI+
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 62 NKSYLDTCRISCEIA-RKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
N +L I A RK GD P S Y+ K E+ + G I
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKP---SHYNEKSYDEIYNQTSGDNTSVYVGN---IAS 250
Query: 121 VTENDDPQ-LLEFLQVMQPRV-KSKMWANDTLIGLMADQKAKVSENISQAIKGGE 173
+TE++ Q F ++ + R+ K + +A A KA V N +Q + GG+
Sbjct: 251 LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMN-NQDV-GGQ 303
Score = 122 (48.0 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 292 QQEVLESGR---LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
QQ +++ R +FV +L +LRE F FG+VS+ ++ D +T +SKG +V Y
Sbjct: 125 QQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYP 184
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELH 387
E A RAIE ++ R + A K ++ H
Sbjct: 185 KREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSH 223
Score = 93 (37.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
V NL VTED + F+Q G +T K++ DG + +AF+ F +A +A++ NK
Sbjct: 50 VGNLDSTVTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQALQTMNKR 107
Query: 65 YL 66
L
Sbjct: 108 LL 109
Score = 92 (37.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N S + Q ++ ++V N+ + TEDE+R+ F+ FG ++EV I + +G
Sbjct: 225 NEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGY 277
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLL 370
A+V + ++A++AI ++N G+L+
Sbjct: 278 AFVKFDNKDAAAKAIVQMNNQDVGGQLV 305
Score = 52 (23.4 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
++ S++V N+ T DE +R+ F GRI V++ K G+ F++FD+ +
Sbjct: 239 DNTSVYVGNIASLTEDE-IRQGFASF---GRITEVRIFK--------MQGYAFVKFDNKD 286
Query: 674 TA 675
A
Sbjct: 287 AA 288
Score = 42 (19.8 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 475 NVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLAL 534
N S +E +T G S +V + +L +E E+ + F FG + +V + + A
Sbjct: 225 NEKSYDEIY-NQTSGDNTSVYVGNIASL----TEDEIRQGFASFGRITEVRIFKMQGYAF 279
Query: 535 VVFLEPVEAAA 545
V F + +AAA
Sbjct: 280 VKF-DNKDAAA 289
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 131 (51.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 29/99 (29%), Positives = 55/99 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S + + LP+ V E+ LRD + GEI + +LM+ +D G S+ +AF+ F+T+ A++AI+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 60 YFNKSYLDTCRISCEIAR---KVGDPNMPRPWSRYSLKK 95
+ I C ++ ++ N+P+ W+ +K
Sbjct: 176 ELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRK 214
Score = 116 (45.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+F+ LP E++LR+ + G + EV ++ D+D+ SKG A+V + + A +AIE L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 361 DNSIFQGRLL 370
+ F+G+ +
Sbjct: 178 HSKEFKGKTI 187
Score = 97 (39.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 273 DANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVV 332
+ N V +P SS + + L+V+N+P + ++L+E F + G V+++
Sbjct: 267 EGNAPTVTWADPKSSPEH-SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP 325
Query: 333 DKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
K KR G +V YA SA +A++ + G+ L V+ A K ++++ +S S
Sbjct: 326 GKGGKRDFG--FVHYAERSSALKAVKDTERYEVNGQPLEVVLA--KPQAERKHDPSSYSY 381
Query: 393 G 393
G
Sbjct: 382 G 382
Score = 69 (29.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
++L+VKN+ T E L++ F H G + + V K GK FGF+ + +A
Sbjct: 292 KALYVKNIPENTSTEQLKELFQRH---GEVTKI-VTPPGKGGKR---DFGFVHYAERSSA 344
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+D + ++G L + L + + +
Sbjct: 345 LKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 68 (29.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILPSTK----TLALVVFLEPVEAAAAFKGLAYKR 554
VKN+P ++S +L ++F + G + K++ P K V + E A A K
Sbjct: 296 VKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYE 355
Query: 555 YKGVPL 560
G PL
Sbjct: 356 VNGQPL 361
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 258 DSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQ 292
D + ++ + EE+ + + D GN ++ ++V+
Sbjct: 23 DEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREVE 57
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 114 (45.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSF---GPISEVVVVKDRETQR--SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A++V R + G LDG + ++ HA K
Sbjct: 59 HASDVMRAMNGESLDGRQI--RVDHAGK 84
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/94 (36%), Positives = 60/94 (63%)
Query: 286 SSSKDVQQEV---LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
S S+++ E ++S +FV N+ Y+A+ +E++ HF G+++ V I++DK T + KG
Sbjct: 57 SQSQELSTESRDDVDSRSIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGF 116
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
AYV + P ++A+ VL+ S+F+GR + V P R
Sbjct: 117 AYVEFTEPSLVAQAL-VLNESVFKGRNIKVSPKR 149
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 137 (53.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 282 GNPS-SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSK 340
GNP + ++ E ++ +++V N+ +L E FS+FG + E + +DK T R K
Sbjct: 210 GNPVVAPAQHFNPENVQR-KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPK 268
Query: 341 GIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399
G A +Y ESA +A+E + F+G +LH A KQ HN S + Q
Sbjct: 269 GFALFVYRSLESAKKALEE-PHKTFEGHVLHCHKANDGPKQVKQHQHNHNSHNQNSRYQ 326
Score = 89 (36.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKY 60
+I V L D L D F Q GEI D K + K G+S+ + FI F++ A A+K
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 61 FNKSYLDTCRISCEIA 76
K + T +C++A
Sbjct: 189 PQKK-IGTRMTACQLA 203
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 134 (52.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 65/302 (21%), Positives = 111/302 (36%)
Query: 76 ARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTEND-DPQLLEFLQ 134
A V + +P S+ S K K++++D V A+K+ +KK +E +E+D D +
Sbjct: 14 APAVKSAGVTKP-SQTSSAKSKKIAKDVA--VKASKKDKKKKVEVSSESDSDSDASDSSS 70
Query: 135 VM--QPRVKSKMWANDTLIGLMADQ-KAKVSENISQAIKGGEKSITLHVKSDKSNVITDS 191
+ V+ K G KA+ S++ S + + S + +SD +
Sbjct: 71 DSDSESEVEEKKPTKAATNGKAKKAAKAESSDSDSSSESEADSSDSSDSESDAKPAPKEK 130
Query: 192 QATEKSKNAAADEL-MSDMDYFKSRVKKDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 250
AT K AAA ++ S+ S
Sbjct: 131 AATNVDKKAAAKKVEKSESSDSDSDSSDSDESDSDAKPAKAEKTDKAKKEETDSDSDSDS 190
Query: 251 XXXXXXCDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTA 310
DS + E + + + + K +E + LFV NL +
Sbjct: 191 DSDSSGSDSSDDEEEKPAKTEAPSKKRKAEEEEEAPAKKTKTEESDKPSTLFVGNLSWNV 250
Query: 311 TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370
+ L E F G V+ ++ D+++ RSKG YV +A PE A +A + GR +
Sbjct: 251 DDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREI 310
Query: 371 HV 372
V
Sbjct: 311 KV 312
Score = 119 (46.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
ES LFV NLP+ A ED + FS+ V + + ++++ R KG YV + E A A
Sbjct: 340 ESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSA 399
Query: 357 IEVLDNSIFQGR 368
E L+ GR
Sbjct: 400 FEQLNGQSINGR 411
Score = 93 (37.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
ES +LFV NL F ++++ F E + E + S+++ ++G+ GFG++ F+SVE
Sbjct: 340 ESDTLFVGNLPFDADEDSVGAFFSE-VAE--VKSLRLPTEQESGRR--KGFGYVTFNSVE 394
Query: 674 TATNVCRDLQGTILDG 689
A + L G ++G
Sbjct: 395 DAKSAFEQLNGQSING 410
Score = 81 (33.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S + V NL V + L + F G +T A+++ ++ G+S+ F ++ F T +EAE+A
Sbjct: 239 STLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHG 298
Query: 60 YFNKSYLDTCRISCEIA 76
+++D I + +
Sbjct: 299 EKQGAFIDGREIKVDFS 315
Score = 57 (25.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST------KTLALVVFLEPV 541
D + + V NLP+D+ E + F + + + LP+ K V F
Sbjct: 335 DTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVE 394
Query: 542 EAAAAFKGLAYKRYKGVPLYLEWA 565
+A +AF+ L + G L+++
Sbjct: 395 DAKSAFEQLNGQSINGRNCRLDYS 418
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 121 (47.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 4 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 62
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 63 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 122
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 123 SSASIRDANLYVSGLPKTMTQKE 145
Score = 107 (42.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 104 TLNGLRLQTKTIKVSYAR 121
Score = 102 (41.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 52/211 (24%), Positives = 93/211 (44%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 134 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQ-QLEGVT 604
++ G P+ +++A PS SQ+ S+ Q N G H A+R ++G+T
Sbjct: 194 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPITIDGMT 253
Query: 605 DA---DIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVS 661
+I +FV NL+ + + L + FG G + +VKV + K
Sbjct: 254 SLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--C 308
Query: 662 MGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
GFGF+ + + A L G L L
Sbjct: 309 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 339
Score = 98 (39.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LPK +T+ L FSQ G I ++++ + G SR FI F EAEEAIK
Sbjct: 130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
Query: 60 YFN 62
N
Sbjct: 190 GLN 192
Score = 97 (39.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 127 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 186
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 187 AIKGLN 192
Score = 86 (35.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 330 NGYRLGDRVLQV 341
Score = 63 (27.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 127 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 181
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 182 IEAEEAIKGLNG 193
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 134 (52.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDE----LREHFSKFGNVSEVHIVVDKDTK 337
G P +S+ + E +S ++VR + EDE LR HFSK G V+ VH+ D++T
Sbjct: 462 GTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETG 521
Query: 338 RSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
S+G AY+ + A+++ + I G + HV +R + S + + + + ++G
Sbjct: 522 ASRGFAYI--DLTSGFDEALQLSGSEIGGGNI-HVEESRPRDSDEGRSSNRAPARG 574
Score = 96 (38.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 7 NLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66
NL + + +FF + GE+ D +L DG + + I F + +EA++A++ K L
Sbjct: 390 NLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLL 449
Query: 67 DTCRISCEIARKVGDPNMPRP 87
+ ++A + G P P
Sbjct: 450 GR-DVRLDLANERGTPRNSNP 469
Score = 57 (25.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 96 EKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMA 155
++E S+DEK P AK K + ++ + ++ + + +V K +D + + A
Sbjct: 305 DEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKKDSDVEM-VDA 363
Query: 156 DQK--AKVSENISQAIKGGEKSI 176
+QK AK + + +GG K++
Sbjct: 364 EQKSNAKQPKTPTNQTQGGSKTL 386
Score = 49 (22.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/124 (24%), Positives = 49/124 (39%)
Query: 93 LKKEK--EVSEDEKNPVLAAK--------RGEKKTIEKVTENDDPQLLEFLQVMQPRV-- 140
+KK+ E S DE+ PV+ K + E + E+ + +DD E +P V
Sbjct: 233 VKKDSSDESSSDEETPVVKKKPTTVVKDAKAESSSSEEESSSDD----EPTPAKKPTVVK 288
Query: 141 KSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNA 200
+K A D+ + + E S K K + K+ K +D + E K
Sbjct: 289 NAKPAAKDS-----SSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEE 343
Query: 201 AADE 204
+ DE
Sbjct: 344 SKDE 347
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 156 (60.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG + EV +V D +T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ + GR +HV
Sbjct: 64 MRATNGESLDGRQIHV 79
Score = 115 (45.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 34/88 (38%), Positives = 42/88 (47%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTYEQALEDHFSSF---GPIFEVVVVKDWETRR--SQGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A+N R G LDG + + HA K
Sbjct: 59 HASNAMRATNGESLDGRQIHVD--HAGK 84
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 156 (60.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HF FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00088, P = 0.00088
Identities = 33/88 (37%), Positives = 43/88 (48%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF G I V V K + + S GFGFI F E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFRSF---GPISEVVVVKDRETQR--SRGFGFITFTDPE 58
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKK 701
A++ R + G LDG + ++ HA K
Sbjct: 59 HASDAMRAMNGESLDGRQI--RVDHAGK 84
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 156 (60.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 31/88 (35%), Positives = 58/88 (65%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ ++FV LP++ + L++HFSK+G+++ ++VVDK TKRS+G +V + +S +A+
Sbjct: 2 NNKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAM 61
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDKQE 385
E +N + GR L V A+ K +++Q+
Sbjct: 62 EA-ENEM-GGRKLVVSFAQEKTENNQQK 87
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 115 (45.5 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L V +P+ D L+++ SKFG++ + ++ D+ T RS+G YV +A E A A++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTK 395
R+L V K ++ K+E+ + T+
Sbjct: 63 -GEHFLGNRILEV-----KVATPKEEMRQPAKKVTR 92
Score = 113 (44.8 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 20/97 (20%), Positives = 56/97 (57%)
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321
+D+ ++ GE I++ ++ ++++Q + R+FV +P + +E + R HF +
Sbjct: 55 EDAKNALKGEHFLGNRILEV-KVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFER 113
Query: 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
+G ++++++ D ++K+ +GI ++ ++ +S +E
Sbjct: 114 YGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Score = 99 (39.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS--KGIAYVLYA 348
++FV LP A+ D+LR++F +FG++ + +I KD KRS +G +V +A
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYI--PKDPKRSGHRGFGFVTFA 289
Score = 96 (38.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 29/88 (32%), Positives = 41/88 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+RI V +P V+E R F + GEITD L KD S+Q IGF T A+
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITD--LYMPKDYNSKQHRGIGFITFSSADSVEDL 148
Query: 61 FNKSY-LDTCRISCEIARKVGDPNMPRP 87
++ L ++ + A D + PRP
Sbjct: 149 MEDTHDLGGTTVAVDRATPKEDDHPPRP 176
Score = 93 (37.8 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
++ V +P + D L+D+ S+ G++ D +M+ + G+SR F ++ F + ++A+ A+K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Score = 82 (33.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 34/113 (30%), Positives = 49/113 (43%)
Query: 576 SKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKH 635
S + KN A+ GEH +LE ++ + P + +R +FV + + + R H
Sbjct: 53 SAEDAKN-ALKGEHFLGNRILEVKVATPKEEMRQPAKKVTR-IFVARIPSSVSESDFRSH 110
Query: 636 FGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEF---DSVETATNVCRDLQGT 685
F + G I + + K N K G GFI F DSVE DL GT
Sbjct: 111 FERY---GEITDLYMPKDY-NSKQ-HRGIGFITFSSADSVEDLMEDTHDLGGT 158
Score = 58 (25.5 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP 527
N +F V LP ++S +L FG+FG + +P
Sbjct: 240 NKIF-VGRLPQEASVDDLRDYFGRFGHIQDAYIP 272
Score = 55 (24.4 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV L + ++LR +FG G I + K K + GFGF+ F A
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRF---GHIQDAYIPKDPKRSGH--RGFGFVTFAENGVADR 296
Query: 678 VCR 680
V R
Sbjct: 297 VAR 299
Score = 45 (20.9 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP 527
K+ +F+ + +P SE + F ++G + + +P
Sbjct: 88 KKVTRIFVAR-IPSSVSESDFRSHFERYGEITDLYMP 123
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 131 (51.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 69/283 (24%), Positives = 115/283 (40%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 54 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 111
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAWN 418
++ + R + V R K +++ G + K+ K + +
Sbjct: 112 KMNGMLLNDRKVFV--GRFKSRKERE-----AELGARA-KEFTNVYIKNFGEDMDDERLK 163
Query: 419 SLFMR--PDTVVENIARKHGVSKS-DLLDREANDLAVRIA-------LGETQV-IAETKK 467
LF + P V+ + + G SK + E ++ A + L Q+ + +K
Sbjct: 164 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 223
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KV 524
+ +F K D + R V L VKNL + L K F FG++ KV
Sbjct: 224 KVER---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 280
Query: 525 ILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
++ +K V F P EA A + + PLY+ A
Sbjct: 281 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 323
Score = 119 (46.9 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 245 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 297
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 298 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 330
Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 308
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 309 NGRIVATKPLYVALAQRKE 327
Score = 109 (43.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 205
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 206 MNGKELNGKQIYVGRAQK 223
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
+A++ E ++++KN DE L+ FG K G LSVKV ++GK S GF
Sbjct: 135 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---KFGPALSVKVMTD-ESGK--SKGF 188
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVR 721
GF+ F+ E A ++ G L+G + + K + Q K + ++ + R
Sbjct: 189 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 245
Score = 102 (41.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 114
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 115 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 174
Query: 118 IEKVTE 123
++ +T+
Sbjct: 175 VKVMTD 180
Score = 102 (41.0 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 202
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 203 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 237
Score = 75 (31.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 336 TKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHN 388
T+RS G AYV + P A RA++ ++ + +G+ + +M ++ S K + N
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 55
Score = 52 (23.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
A V F +P +A A + + KG P+ + W+ D S + GN
Sbjct: 10 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-SLRKSGVGN 55
Score = 39 (18.8 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 39 KSRQFAFIGFRTEQEAEEAIKYFN 62
+S +A++ F+ +AE A+ N
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN 28
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 121 (47.7 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N S ++K+++ E + +FV++LPY +++L FSK+G V +++D S G
Sbjct: 94 NNSVNNKELELE-RDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN-SYGY 151
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLL 370
+V ++ P+ ++ AIE LD +Q + L
Sbjct: 152 GFVRFSSPQESAAAIEELDGYQYQNKKL 179
Score = 109 (43.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S LF++ LPY T+D+LR+ F FG + E +++D + + SK +V ++ AS+AI
Sbjct: 196 SNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQ-SKFAGFVRFSSELDASKAI 254
Query: 358 EVLD 361
+ ++
Sbjct: 255 DAMN 258
Score = 105 (42.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 32/124 (25%), Positives = 56/124 (45%)
Query: 275 NGEIVDPGNPSSSSKDVQQ---EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIV 331
N E ++P + SSSS + LFV +LP + L + FS+FG + V ++
Sbjct: 742 NLESLNPLSASSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVI 801
Query: 332 VDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTS 391
DKDT +KG +V + + A + + ++ + L V K+S + + H+
Sbjct: 802 TDKDTGENKGYGFVKFYQTDEALKCQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQ 861
Query: 392 QGTK 395
K
Sbjct: 862 NQNK 865
Score = 103 (41.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +K LP VT+D+LR F G+I + K+M +G+S+ F+ F +E +A +AI
Sbjct: 197 NNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDA 256
Query: 61 FN 62
N
Sbjct: 257 MN 258
Score = 100 (40.3 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 24/104 (23%), Positives = 52/104 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VK+LP ++ L + FS+ G++ +K+M G S + F+ F + QE+ AI+
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEE 168
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKK-EKEVSEDE 103
+ ++ C ++ + N P + +K +V++D+
Sbjct: 169 LDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQ 212
Score = 93 (37.8 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVILP---STKTLALVVF---LEPVEAA 544
SN++F +K LPYD ++ +L K+F FG + KV+L +K V F L+ +A
Sbjct: 196 SNNLF-IKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAI 254
Query: 545 AAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGE 588
A G+ + G PL +++A ++ Q S+ +K + E
Sbjct: 255 DAMNGVRINKDSGYPLVVKYADTE---QQKISRKQRKMQTIYQE 295
Score = 78 (32.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S +LF+K L + D+ LRK F G+I+ KV NG+ S GF+ F S
Sbjct: 196 SNNLFIKPLPYDVTDDQLRKLFEPF---GKIIECKVMLD-HNGQ--SKFAGFVRFSSELD 249
Query: 675 ATNVCRDLQGTILD---GHALILQLCHAKKDEQVVKKAEK 711
A+ + G ++ G+ L+++ +A ++Q + + ++
Sbjct: 250 ASKAIDAMNGVRINKDSGYPLVVK--YADTEQQKISRKQR 287
Score = 63 (27.2 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+LFV +L D L + F + G++ SV+V G+N G+GF++F + A
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQF---GKLQSVRVITDKDTGEN--KGYGFVKFYQTDEAL 824
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTK 717
+++ G + L ++L + K+ K + ++ K
Sbjct: 825 KCQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQNK 865
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 116 (45.9 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 28/114 (24%), Positives = 57/114 (50%)
Query: 275 NGEIVDPGNP-SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
+G+ VDP K+ + + + RL+V + TED L E+F+K+G V++ I++D
Sbjct: 89 DGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILD 148
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELH 387
K T++ +G +V + +S + + + + + G V K K +++
Sbjct: 149 KATQKPRGFGFVTFDDHDSVDQCV-LQKSHMVNGHRCDVRKGLSKDEMSKAQMN 201
Score = 114 (45.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 286 SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
+ S D E ++FV L T+D +RE +S+FG ++++ ++ D TKRS+G +V
Sbjct: 10 NGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
Query: 346 LYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL 397
++ A++ + I G+ V P R DK ++ S TK L
Sbjct: 70 TFSGKTEVDAAMKQRPH-IIDGKT--VDPKRAVPRDDKNRSESNVS--TKRL 116
Score = 105 (42.0 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIK 59
+I V L T+D +R+F+SQ GEITD +MR K SR F F+ F + E + A+K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 58 (25.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 22/111 (19%), Positives = 47/111 (42%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
D + V ++ L+V + ++ L ++F K G + ++ L GF
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYF---TKYGTVTKSEII--LDKATQKPRGF 157
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSS 715
GF+ FD ++ C + +++GH ++ KDE + +D+ +
Sbjct: 158 GFVTFDDHDSVDQ-CVLQKSHMVNGHRCDVRK-GLSKDEMSKAQMNRDRET 206
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V N P+ TED+L +FS+ GNVS V IV D++T R +G A+V + +A RA++
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 361 DNSIFQGRLLHVMPARHKKS 380
+ F GR L V A+++ +
Sbjct: 66 NGVDFNGRALRVNLAQNRNN 85
Score = 109 (43.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYF 61
+ V N P TED L ++FSQ G +++ +++ ++ G+ R FAF+ F E A+ A+ F
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 62 N 62
N
Sbjct: 66 N 66
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V N P+ TED+L +FS+ GNVS V IV D++T R +G A+V + +A RA++
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 361 DNSIFQGRLLHVMPARHKKS 380
+ F GR L V A+++ +
Sbjct: 66 NGVDFNGRALRVNLAQNRNN 85
Score = 109 (43.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYF 61
+ V N P TED L ++FSQ G +++ +++ ++ G+ R FAF+ F E A+ A+ F
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 62 N 62
N
Sbjct: 66 N 66
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G LF+ L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRPMNGKSLDGRQIRV 79
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 281 PGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
PGN +++++ R ++V N+ Y AT +EL HF G+V+ V I+ DK +
Sbjct: 25 PGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHP 84
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
KG AY+ ++ ES ++ LD S+F+GR + V+P R
Sbjct: 85 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 120
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 281 PGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
PGN +++++ R ++V N+ Y AT +EL HF G+V+ V I+ DK +
Sbjct: 25 PGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHP 84
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
KG AY+ ++ ES ++ LD S+F+GR + V+P R
Sbjct: 85 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 120
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 124 (48.7 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
+ +S SG LF+ LP T T D LR FS FG + ++VD +T S+G +
Sbjct: 85 TQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGF 144
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTS 391
V + SA AI ++ + + + L V A +S+ N+ +
Sbjct: 145 VKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNN 191
Score = 115 (45.5 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 271 EEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHI 330
++D N + + ++++ ++ ++ + S +F+R LP +++L E FS +G V E +
Sbjct: 192 DDDNNNNNNNNNSNNNNTNNIDEQKI-SNNVFIRGLPIEFDKNQLSELFSAYGEVVESKL 250
Query: 331 VVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ 366
++D T S+G V Y +SA A++ L+ I Q
Sbjct: 251 LIDITTNASRGQGLVRYIDTQSAINAVKSLNGFILQ 286
Score = 92 (37.4 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 26/77 (33%), Positives = 35/77 (45%)
Query: 8 LPKYVTEDRLRDFFSQKGEITDAKLM-RTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66
LP T D LR FS GEI ++M G SR F F+ F+ A+ AI N + +
Sbjct: 106 LPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKV 165
Query: 67 DTCRISCEIARKVGDPN 83
+ + A DPN
Sbjct: 166 ENKTLLVRFANS--DPN 180
Score = 59 (25.8 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 465 TKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
T +L N+ + SS + GK G +N V NLP D+ + L ++F G++ V
Sbjct: 355 TMNSLPNSMIGSSS-QPPPGGKNPGTDPTN--LYVYNLPSDADDSLLYRLFSPCGAIASV 411
Query: 525 ILPSTKT 531
+ +T
Sbjct: 412 KIVRDQT 418
Score = 51 (23.0 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+L+V NL D L + F G I SVK+ + V G+GF+ S+ +
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPC---GAIASVKIVRDQTT--QVCRGYGFVRMVSLADSY 437
Query: 677 NVCRDLQGTILDGHAL 692
+ + G + G +
Sbjct: 438 SAINSINGVQVGGKTI 453
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 119 (46.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 159 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 211
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 212 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 244
Score = 115 (45.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 222
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 223 NGRIVATKPLYVALAQRKE 241
Score = 98 (39.6 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL+D F G K+M + GKS+ F F+ F ++A++A+
Sbjct: 63 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 119
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 120 MNGKELNGKQIYVGRAQK 137
Score = 79 (32.9 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 23/96 (23%), Positives = 46/96 (47%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L++ FG V ++ D+ K SKG +V + E A +A
Sbjct: 61 EFTNVYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 116
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 117 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 151
Score = 52 (23.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 40 SRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71
S+ + F+ F T++ AE AI+ N L+ ++
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 40
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 126 (49.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LF+ L + T+D LREHF K+G +++ ++ D TKRS+G +V Y+ E A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSC-EEVDAAMCA 72
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELH 387
+ + GR++ A ++ S K H
Sbjct: 73 RPHKV-DGRVVEPKRAVSREDSVKPGAH 99
Score = 104 (41.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 28/119 (23%), Positives = 58/119 (48%)
Query: 275 NGEIVDPGNPSSSSKDVQQEV-LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
+G +V+P S V+ L ++FV + E LR++F K+G + + ++ D
Sbjct: 78 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMED 137
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+ + + +G A+V + ++ + + ++I G V KK+ KQE+ ++ SQ
Sbjct: 138 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI-NGHNCEV-----KKALSKQEMQSAGSQ 190
Score = 85 (35.0 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
+ +FV + T + NLR +F ++ G+I +++V + ++GK GF F+ FD +T
Sbjct: 103 KKIFVGGIKEDTGEYNLRDYFEKY---GKIETIEVMEDRQSGKK--RGFAFVTFDDHDTV 157
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ TI +GH ++ +K++ Q
Sbjct: 158 DKIVVQKYHTI-NGHNCEVKKALSKQEMQ 185
Score = 74 (31.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQ 52
++ + L T+D LR+ F + G +TD +MR K SR F F+ + E+
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 65
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 130 (50.8 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 41/123 (33%), Positives = 64/123 (52%)
Query: 257 CDSIIKDSI--HSGV---GEEDANGE--IVDPGNPSSSSKDVQQEVLESGRLFVRNLPYT 309
C K S+ HS + G NG +V +PS +D + E + V N+ ++
Sbjct: 948 CYLQFKTSVAAHSALALDGSAVGNGLHLVVKISDPSRK-QDRNGPIYEGREIHVSNVNWS 1006
Query: 310 ATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRL 369
A+ED+L+E FS+FG V V + D SKG YV+++ E A+ A+ + + F+GR
Sbjct: 1007 ASEDDLKELFSRFGTVELVRLPRKVDGG-SKGFGYVVFSSKEEATAALAMHEQE-FRGRP 1064
Query: 370 LHV 372
LHV
Sbjct: 1065 LHV 1067
Score = 109 (43.4 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEA 57
S + VKNLP+ TE ++R FF G I K+M +DGKS + A I F T +A A
Sbjct: 829 STVVVKNLPQGTTEHKVRQFFRDCGAINGVKMMPGEDGKS-EVAMIEFNTRDDAAAA 884
Score = 90 (36.7 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAI 58
V N P E+ +RD FS+ GEI D + K R+F ++ F+T A A+
Sbjct: 909 VTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSAL 962
Score = 87 (35.7 bits), Expect = 7.3e-10, Sum P(3) = 7.3e-10
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYK 553
V N+ + +SE +L ++F +FG+++ V LP +K VVF EA AA + +
Sbjct: 1000 VSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAAL-AMHEQ 1058
Query: 554 RYKGVPLYLE 563
++G PL+++
Sbjct: 1059 EFRGRPLHVK 1068
Score = 85 (35.0 bits), Expect = 7.3e-10, Sum P(3) = 7.3e-10
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK-DTKRSKGIAYVLYAIPESASRAIEV 359
LFV N P TA E+ +R+ FSK+G + ++ K +T R Y+ + +A A+
Sbjct: 907 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRR--FCYLQFKTSVAAHSAL-A 963
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
LD S G LH++ + S KQ+ + +G
Sbjct: 964 LDGSAV-GNGLHLV-VKISDPSRKQDRNGPIYEG 995
Score = 78 (32.5 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E R + V N+N+ +++L++ F G + V++ + + G S GFG++ F S E
Sbjct: 994 EGREIHVSNVNWSASEDDLKELFSRF---GTVELVRLPRKVDGG---SKGFGYVVFSSKE 1047
Query: 674 TAT 676
AT
Sbjct: 1048 EAT 1050
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK--TLALVVFLEPVEAAAAFKGL 550
S V N P + E + +F K+G + + PS K T +L+ + AA L
Sbjct: 903 SETTLFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSAL 962
Query: 551 A 551
A
Sbjct: 963 A 963
Score = 42 (19.8 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGL 550
+R + + N+P ++ + + +G L KV+L A+V + + A A L
Sbjct: 1111 ERRDRTLGLMNVPDTVNDARIRALAEPYGKLVKVVLRPDHQGAIVEYADVNHAGKAALEL 1170
Query: 551 AYKRYK-GVPLYLEWAPSDVLSQSSTSK 577
+ G L++ ++L QS+ K
Sbjct: 1171 EGQEITPGRKLHIGTV-GEMLKQSAEKK 1197
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 119 (46.9 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 122 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 174
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 175 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 207
Score = 115 (45.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 185
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 186 NGRIVATKPLYVALAQRKE 204
Score = 105 (42.0 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL++ F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 82
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 83 MNGKELNGKQIYVGRAQK 100
Score = 105 (42.0 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 21 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 79
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 80 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 114
Score = 69 (29.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 28/90 (31%), Positives = 39/90 (43%)
Query: 481 EFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS--TKTLALV 535
+F K D + R V L VKNL + L K F FG++ KV++ +K V
Sbjct: 111 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFV 170
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
F P EA A + + PLY+ A
Sbjct: 171 CFSSPEEATKAVTEMNGRIVATKPLYVALA 200
Score = 62 (26.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 29/122 (23%), Positives = 50/122 (40%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLD-KVILPST---KTLALVVFLEPVEAAA 545
K +V+ +KN D + L ++FGKFG +L KV+ + K V F +A
Sbjct: 20 KEFTNVY-IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 78
Query: 546 AFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKG--NQKNDAVVGEHDAKRALLEQQLEGV 603
A + K G +Y+ A V Q+ + K D + + ++ +G+
Sbjct: 79 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKNLDDGI 137
Query: 604 TD 605
D
Sbjct: 138 DD 139
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 140 (54.3 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 273 DANGEI--VDPGNPSSSSKDVQQEVLESG-RLFVRNLPYTATEDELREHFSKFGNVSEVH 329
D NG + V+ P S + V E R++V NLP+ L + FS+ G V E
Sbjct: 215 DLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274
Query: 330 IVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378
+V D++T RS+G +V + + + AI LD +GR + V A +
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 112 (44.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 33/118 (27%), Positives = 52/118 (44%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKF 322
D+ V E D + V G S ++ E E +LFV NL Y L F +
Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEF--PEPSEEAKLFVGNLAYDVNSQALAMLFEQA 173
Query: 323 GNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380
G V ++ +++T +S+G +V + + A A+E + GRLL V A + S
Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGS 231
Score = 80 (33.2 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
++V NL + + L + F EH G+++ +V + G+ S GFGF+ V+
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEH---GKVVEARVVYDRETGR--SRGFGFVTMSDVDELNE 300
Query: 678 VCRDLQGTILDGHAL 692
L G L+G A+
Sbjct: 301 AISALDGQNLEGRAI 315
Score = 77 (32.2 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
+++ V NL V L F Q G + A+++ ++ +SR F F+ + EAE A++
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 60 YFNK 63
FN+
Sbjct: 210 KFNR 213
Score = 50 (22.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL 521
V NLP+D G L ++F + G +
Sbjct: 248 VGNLPWDVDNGRLEQLFSEHGKV 270
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 170 (64.9 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 40/112 (35%), Positives = 62/112 (55%)
Query: 271 EEDAN----GEIVDPGNPSSSSKDVQQEVLESGR--LFVRNLPYTATEDELREHFSKFGN 324
EEDA G+++ P + D E +E+ ++V N+ Y T EL +F+ G
Sbjct: 128 EEDAGALLAGQLLSPEKEAGFPSDTPTEKVEADHRSVYVGNVDYEGTARELEAYFNHCGE 187
Query: 325 VSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
+ V I+ DK + KG AY+ +A SA A+E LDNS+F+GR++ V+P R
Sbjct: 188 IHRVTILCDKFSGHPKGYAYIEFATESSAQAAVE-LDNSVFRGRVIKVLPKR 238
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 29/103 (28%), Positives = 58/103 (56%)
Query: 291 VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIP 350
+++ + +++V +L Y T DEL+ F ++G + E +++D++T RSKG A++ Y
Sbjct: 10 LRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQ 69
Query: 351 ESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
++A A+ + QGR + V AR + + D++ S +G
Sbjct: 70 DAAQEAVSKANGIDLQGRKIRVNIAR-ENTGDRRRDGGSGGRG 111
Score = 133 (51.9 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
++I V +L VT D L+ FF Q GEI +AKL+ ++ G+S+ FAFI + T+ A+EA+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 60 YFNKSYLDTCRISCEIARK-VGD 81
N L +I IAR+ GD
Sbjct: 78 KANGIDLQGRKIRVNIARENTGD 100
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 29/103 (28%), Positives = 58/103 (56%)
Query: 291 VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIP 350
+++ + +++V +L Y T DEL+ F ++G + E +++D++T RSKG A++ Y
Sbjct: 10 LRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQ 69
Query: 351 ESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
++A A+ + QGR + V AR + + D++ S +G
Sbjct: 70 DAAQEAVSKANGIDLQGRKIRVNIAR-ENTGDRRRDGGSGGRG 111
Score = 133 (51.9 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
++I V +L VT D L+ FF Q GEI +AKL+ ++ G+S+ FAFI + T+ A+EA+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 60 YFNKSYLDTCRISCEIARK-VGD 81
N L +I IAR+ GD
Sbjct: 78 KANGIDLQGRKIRVNIARENTGD 100
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 133 (51.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LF+ L + T+D LREHF K+G +++ ++ D TKRS+G +V Y+ E A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELH 387
+ + GR++ A ++ S K H
Sbjct: 74 RPHKV-DGRVVEPKRAVSREDSVKPGAH 100
Score = 84 (34.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
+ +FV + T + NLR +F ++ G+I +++V + ++GK GF F+ FD +T
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKY---GKIETIEVMEDRQSGKK--RGFAFVTFDDHDTV 158
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ TI +GH ++ +K++ Q
Sbjct: 159 DKIVVQKYHTI-NGHNCEVKKALSKQEMQ 186
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 119 (46.9 bits), Expect = 8.8e-07, Sum P(3) = 8.8e-07
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L V LP + T++EL+ F G + +V DK T +S G +V Y P+ A +AI L
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLKQ 399
+ Q + + V AR +S + L+ S T T K+
Sbjct: 129 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 168
Score = 108 (43.1 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 99 (39.9 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEE 209
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 210 AIKGLN 215
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 60 (26.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--MSRGVGFIRFDKR 204
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 205 IEAEEAIKGLNG 216
Score = 56 (24.8 bits), Expect = 8.8e-07, Sum P(3) = 8.8e-07
Identities = 20/89 (22%), Positives = 46/89 (51%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 157 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ P+ +++A PS +Q+ S+
Sbjct: 217 QKPPAATEPITVKFANNPSQKTNQAILSQ 245
Score = 55 (24.4 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 307 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 360
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 361 MAIASLNGYRLGDRVL 376
Score = 52 (23.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 309 VYNLAPDADESILWQMFGPFGAVTNV 334
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 127 (49.8 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 30/94 (31%), Positives = 52/94 (55%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++F+ L ED LR+ FS+FG V + ++ DK+T + +G +V + +SA +A+ V
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV-V 160
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
L + G + V KK+ KQE+ + S+G
Sbjct: 161 LKFHMINGHKVEV-----KKALTKQEMQAAGSRG 189
Score = 112 (44.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LFV L T+D LR HF ++G +++ +V ++ KRS+ +V Y+ P+ A A+
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQE 385
+ I G + + A ++ + K E
Sbjct: 71 RPH-ILDGNNVELKRAVAREDAGKPE 95
Score = 89 (36.4 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKY 60
++ V L T+D LR+ F Q G++TD +++ + K SR F F+ + + EA+ A+
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKK 95
LD + E+ R V + +P + +KK
Sbjct: 71 -RPHILDGNNV--ELKRAVAREDAGKPEALAKVKK 102
Score = 59 (25.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 20/89 (22%), Positives = 43/89 (48%)
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
+ +F+ L +++LR F + G + +V + GK GFGF+ F+ ++A
Sbjct: 101 KKIFIGGLKDDIEEDHLRDCFSQF---GAVEKAEVITDKETGKK--RGFGFVYFEDNDSA 155
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
L+ +++GH + ++ K++ Q
Sbjct: 156 DKAVV-LKFHMINGHKVEVKKALTKQEMQ 183
Score = 56 (24.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 484 AGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDK 523
AGK + L + +F + L D E L F +FG+++K
Sbjct: 91 AGKPEALAKVKKIF-IGGLKDDIEEDHLRDCFSQFGAVEK 129
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 125 (49.1 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N ++++ + E L V LP T ++DE+R F FG V ++ DK T +S G
Sbjct: 94 NNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGY 153
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+V Y E A +AI L+ Q + + V AR S K
Sbjct: 154 GFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIK 194
Score = 110 (43.8 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +++D +R F GE+ KL+R K G+S + F+ + +++AE+AI
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 60 YFNKSYLDTCRISCEIAR 77
N L I IAR
Sbjct: 170 ALNGLRLQNKTIKVSIAR 187
Score = 87 (35.7 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL E+ L + F FG V V ++ D + + KG +V E A AI+ L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQ 384
+ R+L V K + +KQ
Sbjct: 423 NGYTLGNRVLQVS---FKTNKNKQ 443
Score = 80 (33.2 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR-----SKGIAYVLYA 348
E ++ L+V LP T+ +L FS +G + I+ D T SKG+ ++ +
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFD 250
Query: 349 IPESASRAIEVLDNS 363
A RAI+ L+ +
Sbjct: 251 QRFEADRAIKELNGT 265
Score = 74 (31.1 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 603 VTDADIDPDRVESRS--LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNV 660
+T+ I + + S +FV NL T + L + FG G + SVKV + L++ K
Sbjct: 346 ITNGMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPF---GAVQSVKVIRDLQSNK-- 400
Query: 661 SMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
GFGF+ + E A + L G L L
Sbjct: 401 CKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVL 432
Score = 54 (24.1 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLD--KVI--LPSTKT--LALVVFLEPVEAAAA 546
S V NL D+ E L ++FG FG++ KVI L S K V EA A
Sbjct: 359 SGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLA 418
Query: 547 FKGL 550
+ L
Sbjct: 419 IQSL 422
Score = 44 (20.5 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 487 TDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAA 546
++ +K +N V LP + ++ +L +F +G K+I +++ L + E AA
Sbjct: 190 SESIKGAN--LYVSGLPKNMTQSDLESLFSPYG---KII--TSRILCDNITGE--HAAGL 240
Query: 547 FKGLAYKRY 555
KG+ + R+
Sbjct: 241 SKGVGFIRF 249
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 135 (52.6 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P K + + +S ++FV +P+ E ELRE+F KFG V+EV ++ D + +R +G
Sbjct: 97 PKEGWKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFG 156
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ + +S +A+ + + I G+ + V A + S ++ SQ
Sbjct: 157 FITFEDEQSVDQAVNMHFHDIM-GKKVEVKRAEPRDSKNQAPGQPGASQ 204
Score = 112 (44.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L ++ T++ LR +FS++G V + I+ DK T +S+G +V + P
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 357 IEVLDNSIFQGRLLHVMP 374
+ +++ GR + P
Sbjct: 68 LASRPHTL-DGRNIDPKP 84
Score = 85 (35.0 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFR 49
++ V L T++ LR +FSQ GE+ D +M+ K +SR F F+ F+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 67 (28.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
E + ++D K SN +F V +P++ E EL + F KFG + +V++
Sbjct: 99 EGWKGPRSDSSK-SNKIF-VGGIPHNCGETELREYFKKFGVVTEVVM 143
Score = 55 (24.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D +S +FV + + LR++F K G + V + + K GFGFI F+
Sbjct: 107 DSSKSNKIFVGGIPHNCGETELREYFK---KFGVVTEVVMIYDAE--KQRPRGFGFITFE 161
Query: 671 ---SVETATNV-CRDLQG 684
SV+ A N+ D+ G
Sbjct: 162 DEQSVDQAVNMHFHDIMG 179
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 122 (48.0 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 39/127 (30%), Positives = 57/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L V LP T++EL+ F G + +V D
Sbjct: 15 ANGPTTINNNCSSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 73
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 74 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 133
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 134 KTMTQKE 140
Score = 108 (43.1 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 89 (36.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 62 (26.9 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQAILSQ 217
Score = 62 (26.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 55 (24.4 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 278 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 331
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 332 MAIASLNGYRLGDRVL 347
Score = 52 (23.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNV 305
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 122 (48.0 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 39/127 (30%), Positives = 57/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L V LP T++EL+ F G + +V D
Sbjct: 15 ANGPTTVNNNCSSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 73
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 74 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 133
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 134 KTMTQKE 140
Score = 108 (43.1 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 89 (36.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 339 NGYRLGDRVLQV 350
Score = 62 (26.9 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQAILSQ 217
Score = 62 (26.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 55 (24.4 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 279 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 332
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 333 MAIASLNGYRLGDRVL 348
Score = 52 (23.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 281 VYNLAPDADESILWQMFGPFGAVTNV 306
>UNIPROTKB|Q32P59 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
Uniprot:Q32P59
Length = 111
Score = 152 (58.6 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 302 FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361
FVR +P+TA ELREHF++FG+V + + DK+T KG+ ++ ++ E A++ +
Sbjct: 22 FVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHKGMGWIHFSSEEELHNALQQ-E 80
Query: 362 NSIFQGRLLHVMPARHK 378
N + G LHV P R K
Sbjct: 81 NHVIDGVKLHVQPQRPK 97
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 115 (45.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 36/121 (29%), Positives = 56/121 (46%)
Query: 283 NPSSSSKDVQQEVLESGR--LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK-RS 339
N + S V+ E + L V LP T++EL+ F G + +V DK T+ +S
Sbjct: 48 NTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQS 107
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTLK 398
G +V Y P+ A +AI L+ Q + + V AR +S + L+ S T T K
Sbjct: 108 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 167
Query: 399 Q 399
+
Sbjct: 168 E 168
Score = 109 (43.4 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK--DGKSRQFAFIGFRTEQEAEEAI 58
+ + V LP+ +T++ L+ F GEI KL+R K +G+S + F+ + ++AE+AI
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 59 KYFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 126 NTLNGLRLQTKTIKVSYAR 144
Score = 97 (39.2 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 209
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 210 AIKGLN 215
Score = 89 (36.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 63 (27.2 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 204
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 205 IEAEEAIKGLNG 216
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 20/89 (22%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 157 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS ++ + S+
Sbjct: 217 QKPPGATEPITVKFANNPSQKVNHTILSQ 245
Score = 55 (24.4 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 308 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 361
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 362 MAIASLNGYRLGDRVL 377
Score = 52 (23.4 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 310 VYNLAPDADESILWQMFGPFGAVTNV 335
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 107 (42.7 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 148 TLNGLRLQTKTIKVSYAR 165
Score = 98 (39.6 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 171 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEE 230
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 231 AIKGLN 236
Score = 86 (35.3 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 387 NGYRLGDRVLQV 398
Score = 73 (30.8 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 178 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 238 QKPSGAAEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 292
Score = 61 (26.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/97 (24%), Positives = 39/97 (40%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G S G GFI FD
Sbjct: 171 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTGG--SRGVGFIRFDKR 225
Query: 673 ETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKA 709
A + L G G A + + A Q +A
Sbjct: 226 IEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQA 262
Score = 57 (25.1 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ + S+ G + V NL DS E L ++FG FG+++ V
Sbjct: 304 ITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 354
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 381
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 382 AIASLNGYRLGDRVL 396
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 151 (58.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + + + L +H S F +SEV IV D++T+RS+G ++ + PE AS
Sbjct: 4 EEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNV 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR +HV
Sbjct: 64 MRAMNGESLDGRQIHV 79
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 68/279 (24%), Positives = 117/279 (41%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L + FS FGN+ +V D++ SKG +V + E+A RAIE
Sbjct: 35 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 92
Query: 359 VLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKT-LKQXXXXXX--KASEASGNT 414
++ + R + V R K +++ EL + T +K + E G
Sbjct: 93 KMNGMLLNDRKVFV--GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-- 148
Query: 415 KAWNSLFMRPDTVVENIARKHG-VS--KSDLLDREANDLAVRIALGETQVIAETKKALTN 471
K +L ++ T ++ G VS + + + +++ + G+ + +K +
Sbjct: 149 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 208
Query: 472 AGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKFGSLD--KVILPS 528
+F K D + R V L VKNL + L K F FG++ KV++
Sbjct: 209 ---QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 265
Query: 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+K V F P EA A + + PLY+ A
Sbjct: 266 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
Score = 119 (46.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS 671
R + +L+VKNL+ DE LRK F G I S KV ++ G+ S GFGF+ F S
Sbjct: 226 RYQGVNLYVKNLDDGIDDERLRKEFSPF---GTITSAKVM--MEGGR--SKGFGFVCFSS 278
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
E AT ++ G I+ L + L K++ Q
Sbjct: 279 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 311
Score = 115 (45.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL ++ LR+ FS FG ++ ++++ RSKG +V ++ PE A++A+ +
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 289
Query: 361 DNSIFQGRLLHVMPARHKK 379
+ I + L+V A+ K+
Sbjct: 290 NGRIVATKPLYVALAQRKE 308
Score = 105 (42.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KN + + ++RL++ F + G K+M + GKS+ F F+ F ++A++A+
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 61 FNKSYLDTCRISCEIARK 78
N L+ +I A+K
Sbjct: 187 MNGKELNGKQIYVGRAQK 204
Score = 105 (42.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E ++++N ++ L+E F KFG V ++ D+ K SKG +V + E A +A
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKA 183
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
++ ++ G+ ++V A+ KK + EL Q
Sbjct: 184 VDEMNGKELNGKQIYVGRAQ-KKVERQTELKRKFEQ 218
Score = 103 (41.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L D FS G I K++ ++G S+ + F+ F T++ AE AI+ N
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 95
Query: 63 KSYLDTCRISCEI--ARKVGDPNM---PRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKT 117
L+ ++ +RK + + + ++ +K E +DE+ L K G +
Sbjct: 96 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 155
Query: 118 IEKVTE 123
++ +T+
Sbjct: 156 VKVMTD 161
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 121 (47.7 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 6 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 64
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 65 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 124
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKE 147
Score = 107 (42.7 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 189 AIKGLN 194
Score = 86 (35.3 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 345 NGYRLGDRVLQV 356
Score = 72 (30.4 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 250
Score = 63 (27.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 183
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 184 IEAEEAIKGLNG 195
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 287 VYNLSPDSDESVLWQLFGPFGAVNNV 312
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 339
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 340 AIASLNGYRLGDRVL 354
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 121 (47.7 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 6 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 64
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 65 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 124
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKE 147
Score = 107 (42.7 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 189 AIKGLN 194
Score = 86 (35.3 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 345 NGYRLGDRVLQV 356
Score = 72 (30.4 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 250
Score = 63 (27.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 183
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 184 IEAEEAIKGLNG 195
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 287 VYNLSPDSDESVLWQLFGPFGAVNNV 312
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 339
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 340 AIASLNGYRLGDRVL 354
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 122 (48.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 39/127 (30%), Positives = 57/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L V LP T++EL+ F G + +V D
Sbjct: 43 ANGPTTINNNCSSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 101
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 102 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 161
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 162 KTMTQKE 168
Score = 108 (43.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 209
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 210 AIKGLN 215
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 366 NGYRLGDRVLQV 377
Score = 62 (26.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 157 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 217 QKPPGATEPITVKFANNPSQKTNQAILSQ 245
Score = 62 (26.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 204
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 205 IEAEEAIKGLNG 216
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 306 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 359
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 360 MAIASLNGYRLGDRVL 375
Score = 52 (23.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 308 VYNLAPDADESILWQMFGPFGAVTNV 333
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 122 (48.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 39/127 (30%), Positives = 57/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L V LP T++EL+ F G + +V D
Sbjct: 44 ANGPTTINNNCSSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 102
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 103 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 162
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 163 KTMTQKE 169
Score = 108 (43.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 210
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 211 AIKGLN 216
Score = 90 (36.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 361 DNSIFQGRLLHVMPAR--HK 378
+ R+L V HK
Sbjct: 368 NGYRLGDRVLQVFKTNKTHK 387
Score = 62 (26.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 158 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 218 QKPPGATEPITVKFANNPSQKTNQAILSQ 246
Score = 62 (26.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 205
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 206 IEAEEAIKGLNG 217
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 308 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 361
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 362 MAIASLNGYRLGDRVL 377
Score = 52 (23.4 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 310 VYNLAPDADESILWQMFGPFGAVTNV 335
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 122 (48.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 39/127 (30%), Positives = 57/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L V LP T++EL+ F G + +V D
Sbjct: 44 ANGPTTINNNCSSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 102
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 103 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 162
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 163 KTMTQKE 169
Score = 108 (43.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 210
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 211 AIKGLN 216
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 62 (26.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 158 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 218 QKPPGATEPITVKFANNPSQKTNQAILSQ 246
Score = 62 (26.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 205
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 206 IEAEEAIKGLNG 217
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 307 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 360
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 361 MAIASLNGYRLGDRVL 376
Score = 52 (23.4 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 309 VYNLAPDADESILWQMFGPFGAVTNV 334
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 113 (44.8 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
DR ++FVKN+ DE L++ F E+ G SVKV +++ S GFGF+ ++
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEY---GPTESVKV---IRDASGKSKGFGFVRYE 247
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVK 707
+ E A DL G +DG L + KK E++ +
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQ-KKIERLAE 283
Score = 109 (43.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 20/72 (27%), Positives = 44/72 (61%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++++NL T +++L+E FS FG++S ++++ + KG V ++ E A++A++ +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 361 DNSIFQGRLLHV 372
+ I + LHV
Sbjct: 362 NGRIVGSKPLHV 373
Score = 104 (41.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV+N+ +++L+E F ++G V ++ D K SKG +V Y E+A +A+ L
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDL 259
Query: 361 DNSIFQGRLLHVMPARHK 378
G++L+V A+ K
Sbjct: 260 HGKSIDGKVLYVGRAQKK 277
Score = 100 (40.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 28/123 (22%), Positives = 57/123 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN+ + +++L++ F + G K++R GKS+ F F+ + T + A++A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
+ +D + A+K + + R+ + KE S P+ E EK
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIE-RLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 121 VTE 123
+ E
Sbjct: 318 LKE 320
Score = 90 (36.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+++KNL+ DE L++ F G I KV + GK GFG + F S E AT
Sbjct: 304 IYIKNLDETINDEKLKEEFSSF---GSISRAKVMMEVGQGK----GFGVVCFSSFEEATK 356
Query: 678 VCRDLQGTILDGHALILQLCHAKK 701
++ G I+ L + L A++
Sbjct: 357 AVDEMNGRIVGSKPLHVTLGQARR 380
Score = 85 (35.0 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +F++NL + L FS FGN+ +V D + SKG AYV + +A+RAI
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIW 163
Query: 359 VLDNSIFQGRLLHV 372
++ R ++V
Sbjct: 164 HMNGVRLNNRQVYV 177
Score = 81 (33.6 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 282 GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
G P+ + K +++ L++ L+V +L TED L + F G + I D T+ G
Sbjct: 4 GEPNPAGK--KKKYLKAA-LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG 60
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373
YV + P A A+ ++ + G+ +M
Sbjct: 61 YGYVNFRFPADAEWALNTMNFDLINGKPFRLM 92
Score = 66 (28.3 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL K + L FS G I K++ +G S+ +A++ F + A AI + N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Score = 53 (23.7 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQ-FAFIGFRTEQEAEEAIKYFN 62
V +L VTED L F G + ++ R +S + ++ FR +AE A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
Score = 45 (20.9 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLD--KVILP--STKTLALVVFLEPVEAAAAFKGLAYKR 554
+KNL ++ +L + F FGS+ KV++ K +V F EA A + +
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRI 365
Query: 555 YKGVPLYL 562
PL++
Sbjct: 366 VGSKPLHV 373
Score = 43 (20.2 bits), Expect = 5.7e-07, Sum P(4) = 5.7e-07
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 495 HVFLVKNLPYDSSEGELAKMFGKFGSLD--KVILPST-KTLAL-VVFLEPVEAAA-AFKG 549
+VF VKN+ D + +L ++F ++G + KVI ++ K+ V E EAA A
Sbjct: 200 NVF-VKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 550 LAYKRYKGVPLYL 562
L K G LY+
Sbjct: 259 LHGKSIDGKVLYV 271
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 121 (47.7 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 39/143 (27%), Positives = 62/143 (43%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G NG + N PS + ++ L V LP T++E R
Sbjct: 11 STMEPQVSNGPTSNTTNGPSSNSRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 69
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 70 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 129
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKE 152
Score = 107 (42.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 97 (39.2 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 194 AIKGLN 199
Score = 86 (35.3 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 73 (30.8 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 201 QKPSGATEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 255
Score = 63 (27.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 188
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 189 IEAEEAIKGLNG 200
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 292 VYNLSPDSDESVLWQLFGPFGAVNNV 317
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 344
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 345 AIASLNGYRLGDRVL 359
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 121 (47.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 11 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN-LIVNYLPQNMTQEEFRS 69
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 70 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 129
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKE 152
Score = 107 (42.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 97 (39.2 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 194 AIKGLN 199
Score = 86 (35.3 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 72 (30.4 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 201 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 255
Score = 63 (27.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 188
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 189 IEAEEAIKGLNG 200
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 292 VYNLSPDSDESVLWQLFGPFGAVNNV 317
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 344
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 345 AIASLNGYRLGDRVL 359
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 107 (42.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 86 (35.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 352 NGYRLGDRVLQV 363
Score = 72 (30.4 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 189 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 243
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 294 VYNLSPDSDESVLWQLFGPFGAVNNV 319
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 346
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 347 AIASLNGYRLGDRVL 361
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 107 (42.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 86 (35.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 352 NGYRLGDRVLQV 363
Score = 72 (30.4 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 189 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 243
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 294 VYNLSPDSDESVLWQLFGPFGAVNNV 319
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 346
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 347 AIASLNGYRLGDRVL 361
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 122 (48.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 39/127 (30%), Positives = 57/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L V LP T++EL+ F G + +V D
Sbjct: 15 ANGPTTINNNCSSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 73
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 74 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 133
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 134 KTMTQKE 140
Score = 108 (43.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 62 (26.9 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 53 (23.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGL 550
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 133 (51.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LF+ L + T+D LREHF K+G +++ ++ D TKRS+G +V Y+ E A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELH 387
+ + GR++ A ++ S K H
Sbjct: 96 RPHKV-DGRVVEPKRAVSREDSVKPGAH 122
Score = 84 (34.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
+ +FV + T + NLR +F ++ G+I +++V + ++GK GF F+ FD +T
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKY---GKIETIEVMEDRQSGKK--RGFAFVTFDDHDTV 180
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ TI +GH ++ +K++ Q
Sbjct: 181 DKIVVQKYHTI-NGHNCEVKKALSKQEMQ 208
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 113 (44.8 bits), Expect = 0.00080, P = 0.00080
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
DR ++FVKN+ DE L++ F E+ G SVKV +++ S GFGF+ ++
Sbjct: 30 DRATFTNVFVKNIGDDIDDEKLKELFCEY---GPTESVKV---IRDASGKSKGFGFVRYE 83
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVK 707
+ E A DL G +DG L + KK E++ +
Sbjct: 84 THEAAQKAVLDLHGKSIDGKVLYVGRAQ-KKIERLAE 119
Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 20/72 (27%), Positives = 44/72 (61%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++++NL T +++L+E FS FG++S ++++ + KG V ++ E A++A++ +
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 197
Query: 361 DNSIFQGRLLHV 372
+ I + LHV
Sbjct: 198 NGRIVGSKPLHV 209
Score = 104 (41.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV+N+ +++L+E F ++G V ++ D K SKG +V Y E+A +A+ L
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDL 95
Query: 361 DNSIFQGRLLHVMPARHK 378
G++L+V A+ K
Sbjct: 96 HGKSIDGKVLYVGRAQKK 113
Score = 100 (40.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 28/123 (22%), Positives = 57/123 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN+ + +++L++ F + G K++R GKS+ F F+ + T + A++A+
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 94
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
+ +D + A+K + + R+ + KE S P+ E EK
Sbjct: 95 LHGKSIDGKVLYVGRAQKKIE-RLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 153
Query: 121 VTE 123
+ E
Sbjct: 154 LKE 156
Score = 90 (36.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+++KNL+ DE L++ F G I KV + GK GFG + F S E AT
Sbjct: 140 IYIKNLDETINDEKLKEEFSSF---GSISRAKVMMEVGQGK----GFGVVCFSSFEEATK 192
Query: 678 VCRDLQGTILDGHALILQLCHAKK 701
++ G I+ L + L A++
Sbjct: 193 AVDEMNGRIVGSKPLHVTLGQARR 216
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 168 (64.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 285 SSSSKDVQQEV--LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
S SS + Q + + S +LF+ + Y+ ED LRE F+K+G V + +++D++T RS+G
Sbjct: 24 SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380
+V + E+AS AI+ LD GR++ V A + S
Sbjct: 84 GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTS 121
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 121 (47.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 6 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN-LIVNYLPQNMTQEEFRS 64
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 65 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 124
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKE 147
Score = 107 (42.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 97 (39.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 189 AIKGLN 194
Score = 86 (35.3 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 359 NGYRLGDRVLQV 370
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 250
Score = 63 (27.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 183
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 184 IEAEEAIKGLNG 195
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 301 VYNLSPDSDESVLWQLFGPFGAVNNV 326
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 353
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 354 AIASLNGYRLGDRVL 368
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 121 (47.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 6 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 64
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 65 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 124
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKE 147
Score = 107 (42.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 97 (39.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 189 AIKGLN 194
Score = 86 (35.3 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 359 NGYRLGDRVLQV 370
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 250
Score = 63 (27.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 183
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 184 IEAEEAIKGLNG 195
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 301 VYNLSPDSDESVLWQLFGPFGAVNNV 326
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 353
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 354 AIASLNGYRLGDRVL 368
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 121 (47.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 22 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 80
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 81 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 140
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 141 SSASIRDANLYVSGLPKTMTQKE 163
Score = 107 (42.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 122 TLNGLRLQTKTIKVSYAR 139
Score = 97 (39.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 145 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 204
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 205 AIKGLN 210
Score = 86 (35.3 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 361 NGYRLGDRVLQV 372
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 152 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 212 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 266
Score = 63 (27.2 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 145 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 199
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 200 IEAEEAIKGLNG 211
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 303 VYNLSPDSDESVLWQLFGPFGAVNNV 328
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 355
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 356 AIASLNGYRLGDRVL 370
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 121 (47.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 10 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 68
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 69 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 128
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 129 SSASIRDANLYVSGLPKTMTQKE 151
Score = 107 (42.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 110 TLNGLRLQTKTIKVSYAR 127
Score = 97 (39.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 133 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 192
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 193 AIKGLN 198
Score = 86 (35.3 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 363 NGYRLGDRVLQV 374
Score = 72 (30.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 140 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 200 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 254
Score = 63 (27.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 133 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 187
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 188 IEAEEAIKGLNG 199
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 305 VYNLSPDSDESVLWQLFGPFGAVNNV 330
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 357
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 358 AIASLNGYRLGDRVL 372
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 121 (47.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 11 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN-LIVNYLPQNMTQEEFRS 69
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 70 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 129
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKE 152
Score = 107 (42.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 97 (39.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 194 AIKGLN 199
Score = 86 (35.3 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 364 NGYRLGDRVLQV 375
Score = 72 (30.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 201 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 255
Score = 63 (27.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 188
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 189 IEAEEAIKGLNG 200
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 306 VYNLSPDSDESVLWQLFGPFGAVNNV 331
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 358
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 359 AIASLNGYRLGDRVL 373
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 121 (47.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 259 SIIKDSIHSGVGEEDANGEIVDPGN-PSSSSKDVQQEVLESGRLFVRNLPYTATEDELRE 317
S ++ + +G +NG + N PS + ++ L V LP T++E R
Sbjct: 11 STMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN-LIVNYLPQNMTQEEFRS 69
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
F G + +V DK T +S G +V Y P+ A +AI L+ Q + + V AR
Sbjct: 70 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 129
Query: 378 KKSSDKQ-ELHNSTSQGTKTLKQ 399
+S + L+ S T T K+
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKE 152
Score = 107 (42.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
+ + V LP+ +T++ R F GEI KL+R K G+S + F+ + ++AE+AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 60 YFNKSYLDTCRISCEIAR 77
N L T I AR
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 97 (39.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 194 AIKGLN 199
Score = 86 (35.3 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL + E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 364 NGYRLGDRVLQV 375
Score = 72 (30.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSKGNQK-NDAVVG--EHDAKRALLEQQL 600
++ G P+ +++A PS SQ+ S+ Q N G H A+R L+ L
Sbjct: 201 QKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLL 255
Score = 63 (27.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G VS G GFI FD
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--VSRGVGFIRFDKR 188
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 189 IEAEEAIKGLNG 200
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL DS E L ++FG FG+++ V
Sbjct: 306 VYNLSPDSDESVLWQLFGPFGAVNNV 331
Score = 55 (24.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+FV NL+ + + L + FG G + +VKV + K GFGF+ + + A
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPF---GAVNNVKVIRDFNTNK--CKGFGFVTMTNYDEAAM 358
Query: 678 VCRDLQGTILDGHAL 692
L G L L
Sbjct: 359 AIASLNGYRLGDRVL 373
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 151 (58.2 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 78/330 (23%), Positives = 139/330 (42%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + TE L E FS G V+ + + D T+RS G AYV Y RA+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXXXXKASEASGNTKAW 417
+ L+ ++ +G+ +M ++ + K T QG +K +++ + KA
Sbjct: 101 DELNYTLIKGKPCRIMWSQRDPALRK------TGQGNVFIKNL--------DSAIDNKAL 146
Query: 418 NSLFMRPDTVVE-NIAR-KHGVSKS-DLLDREANDLAVRIALGETQVIAETKKALTNAGV 474
+ F ++ +A+ + GVSK + E + A ++ KK G
Sbjct: 147 HDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV--GH 204
Query: 475 NVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----ST 529
++S + S K + +K + +KN+ + + E K+F KFG + L +
Sbjct: 205 HISKKDRQS--KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS 262
Query: 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEH 589
+ V F A AA + + K + LY+ A + K + +A E
Sbjct: 263 RGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRK---QYEAARMEK 319
Query: 590 DAKRALLEQQLEGVTDADIDPDRVESRSLF 619
+K + ++ +TD D+D D++ R LF
Sbjct: 320 ASKYQGVNLYVKNLTD-DVDDDKL--RELF 346
Score = 132 (51.5 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 39/133 (29%), Positives = 68/133 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I +KN+ V ++ R F + GEIT A L R +GKSR F F+ F T + A+ A++
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEE 282
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAK-RGEKKTIE 119
N + + ++ A+K + L+K+ E + EK A+K +G ++
Sbjct: 283 MNDKEVRSQKLYVGRAQKKHE-------REEELRKQYEAARMEK----ASKYQGVNLYVK 331
Query: 120 KVTEN-DDPQLLE 131
+T++ DD +L E
Sbjct: 332 NLTDDVDDDKLRE 344
Score = 110 (43.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 33/113 (29%), Positives = 61/113 (53%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV + + G VS G+GF+ +++ E A
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAF---GNILSCKVAQD-EFG--VSKGYGFVHYETAEAAN 184
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSS-TKLLVRNVAFEAQ 728
N + + G +L+ + + +KKD Q K E+ K++ T + ++N+ E +
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQ--SKFEEMKANFTNIYIKNIDPEVE 235
Score = 109 (43.4 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 59/274 (21%), Positives = 115/274 (41%)
Query: 263 DSIHSGVGEEDANGEIVDPGNPSS---SSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319
D+ H ++ N ++ G P S +D G +F++NL L + F
Sbjct: 92 DTAHGERALDELNYTLIK-GKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL---HVMPAR 376
+ FGN+ + D + SKG +V Y E+A+ AI+ ++ + + + H + +
Sbjct: 151 AAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 209
Query: 377 HKKSSDKQELHNSTSQGTKTL------KQXXXXXXKASEASGNTKAWNSLFMRPDTVVEN 430
++S ++ N T+ K + ++ K E + T + +S N
Sbjct: 210 DRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVN 269
Query: 431 IARKHGVSKSDLLDREANDLAVR---IALGETQVIAETKKALTNAGVNVSSLEEFSAGKT 487
+ H +++ + E ND VR + +G Q E ++ L + +E+ A K
Sbjct: 270 FST-HESAQAAV--EEMNDKEVRSQKLYVGRAQKKHEREEELRKQ-YEAARMEK--ASKY 323
Query: 488 DGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL 521
G+ VKNL D + +L ++FG +G++
Sbjct: 324 QGVN-----LYVKNLTDDVDDDKLRELFGPYGTI 352
Score = 93 (37.8 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L D F+ G I K+ + + G S+ + F+ + T + A AIK+ N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 63 KSYLDTCRISC--EIARKVGDPN---MPRPWSRYSLKK-EKEVSEDEKNPVLAAKRGE 114
L+ ++ I++K M ++ +K + EV EDE+ L K GE
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEV-EDEEFRKLFEKFGE 248
Score = 75 (31.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQG 393
K +SKG +V ++ P+ AS+A+ ++ + G+ L+V A+ +K + +L S Q
Sbjct: 411 KPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ-RKDVRRSQLEASI-QA 468
Query: 394 TKTLKQXXXXXXKASEASGNTKAW 417
++Q +A+ A+G +A+
Sbjct: 469 RNNIRQQ-----QAAAAAGMGQAY 487
Score = 63 (27.2 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V+NL +D+LRE F +G ++ ++ +DT A V A PES ++
Sbjct: 328 LYVKNLTDDVDDDKLRELFGPYGTITSAKVM--RDT------APVETATPESETKESANK 379
Query: 361 DNS-IFQGRLLHVMPARHKKSSDKQE 385
+N +G A K+ +K+E
Sbjct: 380 ENEKAAEGE--KEPAAEEKEKEEKKE 403
Score = 62 (26.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 22/87 (25%), Positives = 36/87 (41%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V L VTE L + FS G++ ++ R +S +A++ + E A+ N
Sbjct: 46 VGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNY 105
Query: 64 SYLD--TCRISCE----IARKVGDPNM 84
+ + CRI RK G N+
Sbjct: 106 TLIKGKPCRIMWSQRDPALRKTGQGNV 132
Score = 59 (25.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 651 KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAE 710
KK L GK S GFGF+ F S + A+ ++ +++G L + L +KD V++++
Sbjct: 410 KKPL--GK--SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ-RKD---VRRSQ 461
Query: 711 KDKS 714
+ S
Sbjct: 462 LEAS 465
Score = 57 (25.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK 652
+L+VKNL D+ LR+ FG + G I S KV +
Sbjct: 327 NLYVKNLTDDVDDDKLRELFGPY---GTITSAKVMR 359
Score = 53 (23.7 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 522 DKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQK 581
+K L +K V F P EA+ A + + G PLY+ A + +S Q
Sbjct: 409 EKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQA 468
Query: 582 NDAVVGEHDAKRALLEQ 598
+ + + A A + Q
Sbjct: 469 RNNIRQQQAAAAAGMGQ 485
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 565 APSDVLS-QSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDR 612
AP + + +S T + K + E + + A E++ E +A+ P++
Sbjct: 362 APVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEK 410
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 394 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 453
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 454 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 483
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 169 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
Score = 100 (40.3 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++++ D+ +SKG +V +
Sbjct: 10 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 69
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 70 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 103
Score = 89 (36.4 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 96 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 151
Query: 344 YVLYAIPESASRAIEVL 360
+V + A AI+ +
Sbjct: 152 FVTFTTRAMAQTAIKAM 168
Score = 82 (33.9 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 382 LLAQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 434
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 435 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 66 (28.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 97 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 149
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 150 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 200
Score = 61 (26.5 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Score = 54 (24.1 bits), Expect = 0.00026, Sum P(4) = 0.00026
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 390 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 447
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 448 SYDNPVSAQAAIQSM 462
Score = 45 (20.9 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 22/86 (25%), Positives = 35/86 (40%)
Query: 399 QXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGE 458
Q A+ A+ +T + S + + ++ G S S N +A +LG
Sbjct: 262 QNLAALAAAASAAQSTPSGTSALTTSSSPL-SVLTSSGSSPSSSSSSSVNPIA---SLGA 317
Query: 459 TQVIAETKKALTNAGVNVSSLEEFSA 484
Q +A AG+NVSSL +A
Sbjct: 318 LQTLAGA-----TAGLNVSSLAGMAA 338
Score = 40 (19.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 394 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 453
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 454 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 483
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 169 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++I+ D+ +SKG +V +
Sbjct: 10 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTR 69
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 70 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 103
Score = 91 (37.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 48/227 (21%), Positives = 91/227 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 96 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 151
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXX 403
+V + A AI+ + + M + + +E Q + ++Q
Sbjct: 152 FVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAA 211
Query: 404 XXKASEASGNTKA--WNSLFMR--PDTV----VENIARKHGVSKSDLLDREANDLAVRIA 455
+ A NT + +L+++ T + ++ H + + + + N A+ A
Sbjct: 212 SVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQ-NLAALAAA 270
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNL 502
Q ALT + +S L S+G + SN V + +L
Sbjct: 271 ASAAQNTPSGTNALTTSSSPLSVLT--SSGSSPSSSSSNSVNPIASL 315
Score = 82 (33.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 382 LLTQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 434
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 435 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 66 (28.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 97 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 149
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 150 CAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 200
Score = 62 (26.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Score = 54 (24.1 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 390 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 447
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 448 SYDNPVSAQAAIQSM 462
Score = 40 (19.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 394 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 453
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 454 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 483
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 169 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
Score = 100 (40.3 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++++ D+ +SKG +V +
Sbjct: 10 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 69
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 70 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 103
Score = 91 (37.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 48/227 (21%), Positives = 91/227 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 96 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 151
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXX 403
+V + A AI+ + + M + + +E Q + ++Q
Sbjct: 152 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAA 211
Query: 404 XXKASEASGNTKA--WNSLFMR--PDTV----VENIARKHGVSKSDLLDREANDLAVRIA 455
+ A NT + +L+++ T + ++ H + + + + N A+ A
Sbjct: 212 SVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQ-NLAALAAA 270
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNL 502
Q ALT + +S L S+G + SN V + +L
Sbjct: 271 ASAAQNTPSGTNALTTSSSPLSVLT--SSGSSPSSSSSNSVNPIASL 315
Score = 82 (33.9 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 382 LLTQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 434
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 435 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 66 (28.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 97 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 149
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 150 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 200
Score = 61 (26.5 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Score = 54 (24.1 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 390 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 447
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 448 SYDNPVSAQAAIQSM 462
Score = 40 (19.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 395 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 454
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 455 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 484
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 169 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++I+ D+ +SKG +V +
Sbjct: 10 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTR 69
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 70 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 103
Score = 96 (38.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 49/227 (21%), Positives = 91/227 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 96 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 151
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXX 403
+V + A AI+ + + M + + +E Q + ++Q
Sbjct: 152 FVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAA 211
Query: 404 XXKASEASGNTKA--WNSLFMR--PDTV----VENIARKHGVSKSDLLDREANDLAVRIA 455
+ A NT + +L+++ T + ++ H + + + + N A+ A
Sbjct: 212 SVWGNLAGLNTLGPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQLQ-NLAALAAA 270
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNL 502
Q ALT + +S L SAG + SN V + +L
Sbjct: 271 ASAAQNTPSGTNALTTSSSPLSVLTS-SAGSSPSSSSSNSVNPIASL 316
Score = 82 (33.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 383 LLTQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 435
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 436 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 485
Score = 66 (28.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 97 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 149
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 150 CAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 200
Score = 62 (26.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Score = 54 (24.1 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 391 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 448
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 449 SYDNPVSAQAAIQSM 463
Score = 40 (19.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 395 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 454
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 455 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 484
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 169 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++I+ D+ +SKG +V +
Sbjct: 10 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTR 69
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 70 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 103
Score = 96 (38.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 49/227 (21%), Positives = 91/227 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 96 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 151
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXX 403
+V + A AI+ + + M + + +E Q + ++Q
Sbjct: 152 FVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAA 211
Query: 404 XXKASEASGNTKA--WNSLFMR--PDTV----VENIARKHGVSKSDLLDREANDLAVRIA 455
+ A NT + +L+++ T + ++ H + + + + N A+ A
Sbjct: 212 SVWGNLAGLNTLGPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQLQ-NLAALAAA 270
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNL 502
Q ALT + +S L SAG + SN V + +L
Sbjct: 271 ASAAQNTPSGTNALTTSSSPLSVLTS-SAGSSPSSSSSNSVNPIASL 316
Score = 82 (33.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 383 LLTQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 435
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 436 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 485
Score = 66 (28.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 97 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 149
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 150 CAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 200
Score = 62 (26.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Score = 54 (24.1 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 391 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 448
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 449 SYDNPVSAQAAIQSM 463
Score = 40 (19.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 108 (43.1 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 292 QQEVLESG---RLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLY 347
++ +E+G +FV +L T+ L E FS ++ +V +V+D +T RSKG +V +
Sbjct: 192 EKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Query: 348 AIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNS 389
SRA+ ++ + R + V A K++ Q+ H+S
Sbjct: 252 GDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSS 293
Score = 78 (32.5 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNK 63
V +L ++ E L FS GE++ K++R K +S + F+ F + AEE ++ ++
Sbjct: 112 VGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSG 171
Query: 64 SYL 66
S +
Sbjct: 172 SVM 174
Score = 74 (31.1 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FV ++ DE+LR+ F + G ++SVK+ V G GF++F ++A
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQF---GEVVSVKIP--------VGKGCGFVQFADRKSAE 370
Query: 677 NVCRDLQGTIL 687
+ L GT++
Sbjct: 371 DAIESLNGTVI 381
Score = 58 (25.5 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 465 TKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ +A+ AG + S+ ++DG + +N V + D + +L + F +FG + V
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDG-ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSV 350
Query: 525 ILPSTKTLALVVFLEPVEAAAAFKGL 550
+P K V F + A A + L
Sbjct: 351 KIPVGKGCGFVQFADRKSAEDAIESL 376
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 115 (45.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S+ Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V
Sbjct: 438 SAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 497
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
Y P S+ AI+ ++ + L V R K S
Sbjct: 498 YDNPVSSQAAIQSMNGFQIGMKRLKVQLKRSKNDS 532
Score = 115 (45.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q ++S ++FV +P T +ED+LRE F +G V E++++ D+ +SKG +V Y
Sbjct: 48 QPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTR 107
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
+SA A L N I G + + PA +K++
Sbjct: 108 KSALEAQNALHNMKILPGMHHPIQMKPADSEKNN 141
Score = 106 (42.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ V + K E+ +R FS G+I + +++R DG SR AF+ F Q A+ AIK
Sbjct: 147 KLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSM 206
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
++S ++ C S I K D + R + + ++++ +
Sbjct: 207 HQSQTMEGC--SSPIVVKFADTQKDKEQKRIAQQLQQQMQQ 245
Score = 104 (41.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 85/375 (22%), Positives = 152/375 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LFV + E+++R FS +G + E I+ D S+G A
Sbjct: 134 PADSEKN---NAVEDRKLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGL-SRGCA 189
Query: 344 YVLYAIPESASRAIEVLDNS-IFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXX 402
+V + + A AI+ + S +G ++ DK++ Q + ++Q
Sbjct: 190 FVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDKEQ-KRIAQQLQQQMQQL-- 246
Query: 403 XXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDL-----LDREANDLAVRIALG 457
A+ GN NSL + +++ A G + ++L L+ N A+ A
Sbjct: 247 ---NAASMWGNLTGLNSLGPQYLALLQQSASS-GNALNNLHPMSGLNAMQNLAALAAAAS 302
Query: 458 ETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSN--HVFLVKNLPYDSSEGELAKMF 515
TQ ALT + +S L S+G G + + + P S+ + M
Sbjct: 303 ATQATPTGSSALTTSSSPLSVLT--SSGTPSGQPAQSAWDAYKAGSSPTSSTSSSVNPM- 359
Query: 516 GKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST 575
G+L + + L + AA GL G + + L+Q++
Sbjct: 360 ASLGALQSLAAGAGAGLNMSSL---ASMAALNGGLG----SGGLSNGSGSTMEALTQAAY 412
Query: 576 SKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKH 635
S G Q+ A ++LL QQ V+ A + E +LF+ +L + D++L +
Sbjct: 413 S-GIQQYAAAALPSLYSQSLLSQQ--NVSAAGSQKEGPEGANLFIYHLPQEFGDQDLLQM 469
Query: 636 FGEHIKEGRILSVKV 650
F + G ++S KV
Sbjct: 470 F---MPFGNVISAKV 481
Score = 89 (36.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 35/137 (25%), Positives = 67/137 (48%)
Query: 568 DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKT 627
+ L+Q++ S G Q+ A ++LL QQ V+ A + E +LF+ +L +
Sbjct: 405 EALTQAAYS-GIQQYAAAALPSLYSQSLLSQQ--NVSAAGSQKEGPEGANLFIYHLPQEF 461
Query: 628 CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687
D++L + F + G ++S KV + N+S FGF+ +D+ ++ + + G +
Sbjct: 462 GDQDLLQMF---MPFGNVISAKV--FIDKQTNLSKCFGFVSYDNPVSSQAAIQSMNGFQI 516
Query: 688 DGHALILQLCHAKKDEQ 704
L +QL +K D +
Sbjct: 517 GMKRLKVQLKRSKNDSK 533
Score = 64 (27.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +ED+LR+ F G + + ++R + +S+ F+ + T + A EA
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEA 113
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 114 (45.2 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 29/111 (26%), Positives = 56/111 (50%)
Query: 288 SKDVQQEVLESG-RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
SK +E +++G +F+ NLPY+ L++ F + G+V + +D + S+G V+
Sbjct: 207 SKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGF-SRGFGSVI 265
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARH--KKSSDKQELHNSTSQGTK 395
Y + RAI+ + +GR+L V R +K++D+ + T+
Sbjct: 266 YPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTR 316
Score = 102 (41.0 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FVRNL + T ++L+E F G V E I+ K R G+ V + ES AI
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHHR--GMGTVEFTKNESVQDAISKF 181
Query: 361 DNSIFQGRLLHV 372
D ++F R L V
Sbjct: 182 DGALFMDRKLMV 193
Score = 73 (30.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I V+NL T + L++ F GE+ +A ++ +K G R + F + ++AI F+
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFD 182
Query: 63 KS-YLD 67
+ ++D
Sbjct: 183 GALFMD 188
Score = 72 (30.4 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 24/104 (23%), Positives = 48/104 (46%)
Query: 471 NAGVNVS-SLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST 529
+A V++ + +F+ G G R+ ++ NLP+ ++ +L +FG G ++ L
Sbjct: 325 DAAVHIDETAAKFTEGVNPGGDRNCFIYC-SNLPFSTARSDLFDLFGPIGKINNAELKPQ 383
Query: 530 KT-----LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568
+ +A+V + V+A + L Y G L + +A D
Sbjct: 384 ENGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISYARRD 427
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 117 (46.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 421 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 480
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 481 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 510
Score = 103 (41.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 196 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 234
Score = 100 (40.3 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++++ D+ +SKG +V +
Sbjct: 37 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 96
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 97 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 130
Score = 89 (36.4 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 123 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 178
Query: 344 YVLYAIPESASRAIEVL 360
+V + A AI+ +
Sbjct: 179 FVTFTTRAMAQTAIKAM 195
Score = 82 (33.9 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 409 LLTQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 461
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 462 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 511
Score = 66 (28.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 124 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 176
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 177 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 227
Score = 61 (26.5 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Score = 54 (24.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 417 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 474
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 475 SYDNPVSAQAAIQSM 489
Score = 49 (22.3 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 386 LHNSTSQGTKTLKQXXXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDR 445
LH L+ AS A N+L + ++ G S S
Sbjct: 277 LHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPL--SVLTSSGSSPSSSSSS 334
Query: 446 EANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSA 484
N +A +LG Q +A AG+NVSSL +A
Sbjct: 335 SVNPIA---SLGALQTLAGA-----TAGLNVSSLAGMAA 365
Score = 40 (19.1 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 147 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 133 (51.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S + + +P TE L+ F GE+T+ ++MR KD G + +AF+ FR++ A EAI
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 60 YFNKSYLDTCRISCEIAR---KVGDPNMPRPWSRYSLKK 95
N + RI C + ++ N+PR W +KK
Sbjct: 152 TLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKK 190
Score = 122 (48.0 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 269 VGEEDANGEIVDPGNPSSSSKDVQQEVL--ESGRLFVRNLPYTATEDELREHFSKFGNVS 326
V EE+ + V + V+ L +++ +P ATE +L+ G V+
Sbjct: 60 VEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVT 119
Query: 327 EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH--VMPARHK 378
EV I+ +KD+ KG A+V + + A+ AI+ L+N+ F+G+ + A+H+
Sbjct: 120 EVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHR 173
Score = 85 (35.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NLP T++ L+ F G + +V I K K +V YA S RA++
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTK 395
+ G +L A K +D Q+ + +T Q +
Sbjct: 330 ERYEIDGHMLDCTLA--KPQAD-QKTNTNTVQNVQ 361
Score = 84 (34.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIE 668
D + ++L++KNL E L+ F H G+IL V + K GK S +GF+
Sbjct: 261 DSSASQVKALYIKNLPRDITQERLKALFEHH---GKILKVVIPP-AKPGKEDSR-YGFVH 315
Query: 669 FDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+ + ++ + +DGH L L + D++
Sbjct: 316 YAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQK 351
Score = 72 (30.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 476 VSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
VS E S G D +KNLP D ++ L +F G + KV++P K
Sbjct: 249 VSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAK 303
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 119 (46.9 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 30/94 (31%), Positives = 54/94 (57%)
Query: 279 VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
+D +S++ ++E ++ LFV+NLPY+ T+D+LRE F + ++ + + +T
Sbjct: 361 LDKARSKENSQENKKE-RDARTLFVKNLPYSITQDDLREIFDQ---AVDIRVPMG-NTGT 415
Query: 339 SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372
S+GIAY+ + A +A+E S QGR + V
Sbjct: 416 SRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIV 449
Score = 99 (39.9 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 32/114 (28%), Positives = 56/114 (49%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
++R+LFVKNL + ++LR+ F + +V ++ + N S G +IEF +
Sbjct: 378 DARTLFVKNLPYSITQDDLREIFDQ--------AVDIRVPMGN-TGTSRGIAYIEFKTEA 428
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEA 727
A + QG+ + G ++I+ K Q + A +S L+V N+AF A
Sbjct: 429 IAEKALEEAQGSDVQGRSIIVDFT-GDKSRQGGRGAPS--ASKVLVVNNLAFSA 479
Score = 98 (39.6 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
VKNLP +T+D LR+ F Q D ++ G SR A+I F+TE AE+A++
Sbjct: 384 VKNLPYSITQDDLREIFDQA---VDIRVPMGNTGTSRGIAYIEFKTEAIAEKALE 435
Score = 90 (36.7 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L V NL ++A+ED L+ F K V I + ++ R KG A+V + E + A+E
Sbjct: 470 LVVNNLAFSASEDSLQSVFEK-----AVSIRIPQNNGRPKGYAFVEFENVEDSKEALENC 524
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL 397
+N+ +GR + + +++ + NS TKTL
Sbjct: 525 NNTDIEGRSIRLEYSQNDRERGGGGRGNSGP--TKTL 559
Score = 80 (33.2 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 24/105 (22%), Positives = 53/105 (50%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S+ L V NL F +++L+ F + + S+++ ++ NG+ G+ F+EF++VE
Sbjct: 467 SKVLVVNNLAFSASEDSLQSVFEKAV------SIRIPQN--NGR--PKGYAFVEFENVED 516
Query: 675 ATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLL 719
+ + T ++G ++ L+ +++ D + + TK L
Sbjct: 517 SKEALENCNNTDIEGRSIRLE--YSQNDRERGGGGRGNSGPTKTL 559
Score = 78 (32.5 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
+++LFVK L+ T D+ L+ F +G I + ++ G S GFGF++FD+ +
Sbjct: 556 TKTLFVKGLSDDTTDQTLKDSF-----DGAI-AARIATDRDTGS--SKGFGFVDFDNEQD 607
Query: 675 ATNVCRDLQGTILDGHALILQLCHAK 700
+ +DG+ + L K
Sbjct: 608 CKAAKEAMDDGEIDGNKVTLDYAKPK 633
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFV+ L T+ L++ F G ++ I D+DT SKG +V + + A E +
Sbjct: 559 LFVKGLSDDTTDQTLKDSFD--GAIA-ARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAM 615
Query: 361 DNSIFQGRLLHVMPARHK 378
D+ G + + A+ K
Sbjct: 616 DDGEIDGNKVTLDYAKPK 633
Score = 73 (30.8 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 31/101 (30%), Positives = 47/101 (46%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E LF+ NL DEL+ SKF + + I D +K YV +A E +A
Sbjct: 288 EGFSLFLGNLNNNKDFDELKSAISKFFSKEGLEIQ-DVRLGGTKKFGYVDFASEEELQKA 346
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL 397
+E L+ G+ + + AR K++S QE N + +TL
Sbjct: 347 LE-LNGKKLLGQPVKLDKARSKENS--QE--NKKERDARTL 382
Score = 68 (29.0 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 20 FFSQKG-EITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66
FFS++G EI D +L G +++F ++ F +E+E ++A++ K L
Sbjct: 313 FFSKEGLEIQDVRL-----GGTKKFGYVDFASEEELQKALELNGKKLL 355
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 163 ENISQAIK-GGEKSITLHVKSDKSNVITDSQATEKSKNA 200
E + +A++ G+K + VK DK+ +SQ +K ++A
Sbjct: 341 EELQKALELNGKKLLGQPVKLDKARSKENSQENKKERDA 379
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 95 KEKEVSEDEKNPVLAAKRGEKKTIEKVT 122
+E + E+E+ P AKR + EK T
Sbjct: 250 EEDDDEEEEETPATPAKRKAETKKEKGT 277
Score = 40 (19.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 97 KEVSEDEKNPVLAAKRGEKKTIEKVTENDD 126
K V++ PV A K G+ ++ + DD
Sbjct: 46 KAVAKKNAAPVKAVKNGKAAAKQESEDEDD 75
Score = 39 (18.8 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 95 KEKEVSEDEK---NPVLAAKR-GEKKTIEKVTENDD 126
+E++ SE+E+ P AK+ G K E+ E DD
Sbjct: 212 EEEDDSEEEEMDTTPAPKAKKAGMVKAKEESEEEDD 247
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 117 (46.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+E E LF+ +LP + +L + F FGNV + +DK T SK +V Y P
Sbjct: 422 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 481
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
SA AI+ ++ + L V R K S
Sbjct: 482 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 511
Score = 103 (41.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K TE+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
+++ ++ C S + K D + R + + ++++ +
Sbjct: 196 HQAQTMEGC--SSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 234
Score = 100 (40.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIP 350
Q L++ ++FV +P T +E +LRE F ++G V E++++ D+ +SKG +V +
Sbjct: 37 QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 96
Query: 351 ESASRAIEVLDN-SIFQG--RLLHVMPARHKKSS 381
++A A L N + G + + PA +K++
Sbjct: 97 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 130
Score = 96 (38.9 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 49/227 (21%), Positives = 91/227 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K+ +E +LF+ + TE+++R FS FG + E I+ D S+G A
Sbjct: 123 PADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCA 178
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQXXXX 403
+V + A AI+ + + M + + +E Q + ++Q
Sbjct: 179 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAA 238
Query: 404 XXKASEASGNTKA--WNSLFMR--PDTV----VENIARKHGVSKSDLLDREANDLAVRIA 455
+ A NT + +L+++ T + ++ H + + + + N A+ A
Sbjct: 239 SVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQ-NLAALAAA 297
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNL 502
Q ALT + +S L SAG + SN V + +L
Sbjct: 298 ASAAQNTPSGTNALTTSSSPLSVLTS-SAGSSPSSSSSNSVNPIASL 343
Score = 82 (33.9 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 595 LLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL 654
LL QQ G A + E +LF+ +L + D++L + F + G ++S KV +
Sbjct: 410 LLTQQSIGA--AGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---MPFGNVVSAKV--FI 462
Query: 655 KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
N+S FGF+ +D+ +A + + G + L +QL +K D +
Sbjct: 463 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 512
Score = 66 (28.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 606 ADIDPDR-VESRSLFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMG 663
AD + + VE R LF+ ++ K C EN +R F G+I ++ L+ +S G
Sbjct: 124 ADSEKNNAVEDRKLFIGMIS-KKCTENDIRVMFSSF---GQIEECRI---LRGPDGLSRG 176
Query: 664 FGFIEFDSVETATNVCRDL-QGTILDGHA--LILQLCHAKKDEQVVKKAEK 711
F+ F + A + + Q ++G + ++++ +KD++ + A++
Sbjct: 177 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQ 227
Score = 61 (26.5 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG---KSRQFAFIGFRTEQEAEEA 57
++ V +P+ +E LR+ F Q G + + ++R + +S+ F+ F T + A EA
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Score = 54 (24.1 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 483 SAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALV 535
+AG + +G + +N + +LP + + +L +MF FG++ KV + +K V
Sbjct: 418 AAGSQKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 475
Query: 536 VFLEPVEAAAAFKGL 550
+ PV A AA + +
Sbjct: 476 SYDNPVSAQAAIQSM 490
Score = 40 (19.1 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 507 SEGELAKMFGKFGSLDKV-IL--PS--TKTLALVVFLEPVEAAAAFKGL 550
+E ++ MF FG +++ IL P ++ A V F A A K +
Sbjct: 147 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 131 (51.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
K + + +S ++FV +P+ E ELRE+F KFG V+EV ++ D + +R +G ++ +
Sbjct: 103 KGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+S +A+ + + I G+ + V A + S ++ SQ
Sbjct: 163 DEQSVDQAVNMHFHDIM-GKKVEVKRAEPRDSKNQAPGQPGASQ 205
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L ++ T++ LR +FS++G V + I+ DK T +S+G +V + P
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 357 IEVLDNSIFQGRLLHVMP 374
+ +++ GR + P
Sbjct: 68 LASRPHTL-DGRNIDPKP 84
Score = 85 (35.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFR 49
++ V L T++ LR +FSQ GE+ D +M+ K +SR F F+ F+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
E + G +SN +F V +P++ E EL + F KFG + +V++
Sbjct: 99 EGWQKGPRSDSSKSNKIF-VGGIPHNCGETELREYFKKFGVVTEVVM 144
Score = 55 (24.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D +S +FV + + LR++F K G + V + + K GFGFI F+
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFK---KFGVVTEVVMIYDAE--KQRPRGFGFITFE 162
Query: 671 ---SVETATNV-CRDLQG 684
SV+ A N+ D+ G
Sbjct: 163 DEQSVDQAVNMHFHDIMG 180
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 131 (51.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYA 348
K + + +S ++FV +P+ E ELRE+F KFG V+EV ++ D + +R +G ++ +
Sbjct: 103 KGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162
Query: 349 IPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ 392
+S +A+ + + I G+ + V A + S ++ SQ
Sbjct: 163 DEQSVDQAVNMHFHDIM-GKKVEVKRAEPRDSKNQAPGQPGASQ 205
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L ++ T++ LR +FS++G V + I+ DK T +S+G +V + P
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 357 IEVLDNSIFQGRLLHVMP 374
+ +++ GR + P
Sbjct: 68 LASRPHTL-DGRNIDPKP 84
Score = 85 (35.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFR 49
++ V L T++ LR +FSQ GE+ D +M+ K +SR F F+ F+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
E + G +SN +F V +P++ E EL + F KFG + +V++
Sbjct: 99 EGWQKGPRSDSSKSNKIF-VGGIPHNCGETELREYFKKFGVVTEVVM 144
Score = 55 (24.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
D +S +FV + + LR++F K G + V + + K GFGFI F+
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFK---KFGVVTEVVMIYDAE--KQRPRGFGFITFE 162
Query: 671 ---SVETATNV-CRDLQG 684
SV+ A N+ D+ G
Sbjct: 163 DEQSVDQAVNMHFHDIMG 180
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 115 (45.5 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 38/127 (29%), Positives = 56/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L LP T++EL+ F G + +V D
Sbjct: 15 ANGPTTVNNNCSSPVDSGNTEDSKTN-LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRD 73
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 74 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 133
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 134 KTMTQKE 140
Score = 104 (41.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 8 LPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66
LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI N L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 67 DTCRISCEIAR 77
T I AR
Sbjct: 106 QTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 89 (36.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 62 (26.9 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQAILSQ 217
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 55 (24.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 278 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 331
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 332 MAIASLNGYRLGDRVL 347
Score = 52 (23.4 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNV 305
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 115 (45.5 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 38/127 (29%), Positives = 56/127 (44%)
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
ANG N SS E ++ L LP T++EL+ F G + +V D
Sbjct: 15 ANGPTTVNNNCSSPVDSGNTEDSKTN-LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRD 73
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQ 392
K T +S G +V Y P+ A +AI L+ Q + + V AR +S + L+ S
Sbjct: 74 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 133
Query: 393 GTKTLKQ 399
T T K+
Sbjct: 134 KTMTQKE 140
Score = 104 (41.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 8 LPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66
LP+ +T++ L+ F GEI KL+R K G+S + F+ + ++AE+AI N L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 67 DTCRISCEIAR 77
T I AR
Sbjct: 106 QTKTIKVSYAR 116
Score = 97 (39.2 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ L+V LP T T+ EL + FS++G + I+VD+ T S+G+ ++ + A
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 356 AIEVLD 361
AI+ L+
Sbjct: 182 AIKGLN 187
Score = 89 (36.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+FV NL A E L + F FG V+ V ++ D +T + KG +V + A+ AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 361 DNSIFQGRLLHV 372
+ R+L V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 62 (26.9 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSL--DKVILPS----TKTLALVVFLEPVEAAAAFKGLAY 552
V LP ++ EL ++F ++G + ++++ ++ + + F + +EA A KGL
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 553 KRYKGV--PLYLEWA--PSDVLSQSSTSK 577
++ G P+ +++A PS +Q+ S+
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQAILSQ 217
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ +L+V L + L + F ++ GRI++ ++ G +S G GFI FD
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTG--ISRGVGFIRFDKR 176
Query: 673 ETATNVCRDLQG 684
A + L G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 55 (24.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 618 LFVKNLNFKTCDEN-LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+FV NL DE+ L + FG G + +VKV + K GFGF+ + + A
Sbjct: 278 IFVYNLA-PDADESILWQMFGPF---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYDEAA 331
Query: 677 NVCRDLQGTILDGHAL 692
L G L L
Sbjct: 332 MAIASLNGYRLGDRVL 347
Score = 52 (23.4 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV 524
V NL D+ E L +MFG FG++ V
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNV 305
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 148 (57.2 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 40/118 (33%), Positives = 63/118 (53%)
Query: 285 SSSSKDVQQ-EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
SS S V++ L S RLFV L T ++L++ F+ FG + + ++ D+D+ RSKG
Sbjct: 19 SSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSD--KQE-LHNSTSQGTKTLK 398
+V YA E A +A ++ G ++ V PAR ++ +QE L S+ G T K
Sbjct: 79 FVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSESGFTTNK 136
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKY 60
R+ V L + T ++L+D F+ G++ DA+++ +D G+S+ F F+ + T ++AE+A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPR-PWSRYSLKKEKE 98
N +LD I + AR P PR P + L+ E
Sbjct: 95 MNAKFLDGWVIFVDPAR----PREPRRPLQQEPLRPSSE 129
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 148 (57.2 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V N P+ TE+EL FS G ++ V IV D++T R +G A++ +A SA RA+E +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 361 DNSIFQGRLLHV 372
+ + F GR L V
Sbjct: 67 NGAEFNGRPLRV 78
Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYF 61
+ V N P TE+ L +FFS G+I + +++ ++ G+ R FAFI F E A+ A++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 62 NKSYLDTCRISCEIARK 78
N + + + +A K
Sbjct: 67 NGAEFNGRPLRVNLANK 83
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 148 (57.2 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V N+PY TE+E+ +F+ G+V+ V IV D++T R +G A+V ++ A RA+E L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 361 DNSIFQGRLLHV 372
+ F GR L V
Sbjct: 68 NGVAFNGRNLRV 79
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 134 (52.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 37/121 (30%), Positives = 65/121 (53%)
Query: 264 SIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFG 323
S+ V E++ + + + + +++ Q L+ +LFV NLP++ + +++ E F + G
Sbjct: 63 SVLCSVAEKETSAD--EETSQEEKTEETQNSNLKR-KLFVFNLPWSMSVNDISELFGQCG 119
Query: 324 NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH-KKSSD 382
V+ V I+ KD K ++G A+V A E A AI+ D GR++ V AR KK +
Sbjct: 120 TVNNVEIIRQKDGK-NRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTP 178
Query: 383 K 383
K
Sbjct: 179 K 179
Score = 120 (47.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ V NLP ++ + + + F Q G + + +++R KDGK+R FAF+ + +EA+ AI F
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 62 NKSYLDTCRISCEIARKVGDPNMPRP 87
+ + IS AR+ P P
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSP 181
Score = 92 (37.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 30/100 (30%), Positives = 45/100 (45%)
Query: 300 RLFVRNLPYTATEDELREHFSK--FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+L+V NL + A LRE F+ F VS + D + RS G +V +A E A AI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEG-RSSGYGFVSFATREEAENAI 253
Query: 358 EVLDNSIFQGRLL----HVMPARHKKSSDKQELHNSTSQG 393
L+ GR + + A + D E +N++ G
Sbjct: 254 TKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASEDG 293
Score = 67 (28.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
L+V NL +K +LR+ F + +S +V G+ S G+GF+ F + E A N
Sbjct: 196 LYVSNLAWKARSTHLRELFTA--ADFNPVSARVVFADPEGR--SSGYGFVSFATREEAEN 251
Query: 678 VCRDLQGTILDGHALILQ 695
L G + G + L+
Sbjct: 252 AITKLNGKEIMGRPITLK 269
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 98 (39.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 39/121 (32%), Positives = 52/121 (42%)
Query: 290 DVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK-------DTKRSKG- 341
DV ++ + L V LP T+DELR FS G V ++ DK + SKG
Sbjct: 11 DVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGH 70
Query: 342 -IAY--VLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQ-ELHNSTSQGTKTL 397
+ Y V Y + A RAI L+ Q + + V AR S K L+ S T T
Sbjct: 71 SLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQ 130
Query: 398 K 398
K
Sbjct: 131 K 131
Score = 97 (39.2 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
E ++ L++ LP T T+ ++ + F FG++ ++VD+ T S+G+A++ + A
Sbjct: 112 ESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEA 171
Query: 354 SRAI 357
AI
Sbjct: 172 EEAI 175
Score = 96 (38.9 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 28/89 (31%), Positives = 41/89 (46%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK------------DGKSRQFAFIGF 48
+ + V LP+ +T+D LR FS GE+ AKL+R K G S + F+ +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 49 RTEQEAEEAIKYFNKSYLDTCRISCEIAR 77
++AE AI N L + I AR
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKVSFAR 108
Score = 93 (37.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 28/88 (31%), Positives = 40/88 (45%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
S SS +V +FV NL A E L + F FG V+ V ++ D +T + KG +
Sbjct: 241 SISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 300
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHV 372
V E A+ AI L+ + L V
Sbjct: 301 VTMTNYEEAAMAIASLNGYRLGDKTLQV 328
Score = 82 (33.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 53/225 (23%), Positives = 92/225 (40%)
Query: 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPSTKTLAL-VVFL 538
F+ ++ +K +N + LP ++ ++ MF FG + +V++ L+ V F+
Sbjct: 106 FARPSSESIKDAN--LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFI 163
Query: 539 ------EPVEAAAAFKGLAYKRY-KGVPLYLEWA--PSD-----VLSQSSTSKGNQKNDA 584
E EA A+F G +K P+ +++A P+ +LSQ S +
Sbjct: 164 RFDKRSEAEEAIASFNG--HKPPGSSEPITVKFAANPNQNKNVALLSQICHSPARRFGGP 221
Query: 585 VVGEHDAKRALLE----QQLEGVTDADIDPDRVESRSLFVKNLNFKTCDEN-LRKHFGEH 639
V H A+R + ++ ++ +FV NL + DE L + FG
Sbjct: 222 V--HHQAQRFRFSPMGVDHMSSISSVNVASSATSGWCIFVYNLG-QDADEGILWQMFGPF 278
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
G + +VKV + K GFGF+ + E A L G
Sbjct: 279 ---GAVTNVKVIRDFNTNK--CKGFGFVTMTNYEEAAMAIASLNG 318
Score = 62 (26.9 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
+ V + S+ S V NL D+ EG L +MFG FG++ V
Sbjct: 234 MGVDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNV 284
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 118 (46.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S+ Q+E E LF+ +LP + ++ + F FGNV + +DK T SK +V
Sbjct: 300 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 359
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
Y P SA AI+ ++ + L V R K S
Sbjct: 360 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 394
Score = 98 (39.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 27/101 (26%), Positives = 50/101 (49%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K E+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 81
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
++S ++ C S I K D + R + +++ +
Sbjct: 82 HQSQTMEGC--SSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 120
Score = 96 (38.9 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 44/192 (22%), Positives = 77/192 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K +E +LF+ + E+++R FS FG + E I+ D S+G A
Sbjct: 9 PADSEKS---NAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGL-SRGCA 64
Query: 344 YVLYAIPESASRAIEVLDNS-IFQG--RLLHVMPARHKKSSDKQELHNSTSQGTKTLKQX 400
+V ++ A AI+ + S +G + V A +K +++ L +Q + L
Sbjct: 65 FVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLN-- 122
Query: 401 XXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
+ G T + +L + T N+ G+ + + A L L
Sbjct: 123 TATWGNLTGLGGLTPQYLALLQQA-TSSSNLGAFSGIQQ--MAGMNALQLQNLATLAAAA 179
Query: 461 VIAETKKALTNA 472
A+T TNA
Sbjct: 180 AAAQTSATTTNA 191
Score = 79 (32.9 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 34/137 (24%), Positives = 66/137 (48%)
Query: 568 DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKT 627
D L+Q+ + G Q+ A ++LL+QQ + A + E +LF+ +L +
Sbjct: 270 DALTQAYS--GIQQYAAAALPTLYSQSLLQQQ----SAAGSQKEGPEGANLFIYHLPQEF 323
Query: 628 CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687
D+++ + F + G ++S KV + N+S FGF+ +D+ +A + + G +
Sbjct: 324 GDQDILQMF---MPFGNVISAKV--FIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQI 378
Query: 688 DGHALILQLCHAKKDEQ 704
L +QL +K D +
Sbjct: 379 GMKRLKVQLKRSKNDSK 395
Score = 38 (18.4 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRS 493
+G + A A N G+ + L +AG D L ++
Sbjct: 238 VGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQA 275
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 130 (50.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 29/102 (28%), Positives = 56/102 (54%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
+S ++FV +P+ E ELRE+F KFG V+EV ++ D + +R +G ++ + +S +A
Sbjct: 101 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQ-GTKTL 397
+ + + I G+ + V A + S + SQ G++ +
Sbjct: 161 VNMHFHDIM-GKKVEVKRAEPRDSKSQAPGQPGASQWGSRVV 201
Score = 103 (41.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LFV L ++ T++ LR +FS++G V + I+ DK T +S+G +V + P +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 360 LDNSIFQGRLLHVMP 374
+++ GR + P
Sbjct: 61 RPHTL-DGRNIDPKP 74
Score = 85 (35.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFR 49
++ V L T++ LR +FSQ GE+ D +M+ K +SR F F+ F+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 49
Score = 67 (28.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL 526
E + G +SN +F V +P++ E EL + F KFG + +V++
Sbjct: 89 EGWQKGPRSDNSKSNKIF-VGGIPHNCGETELREYFKKFGVVTEVVM 134
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 118 (46.6 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S+ Q+E E LF+ +LP + ++ + F FGNV + +DK T SK +V
Sbjct: 306 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 365
Query: 347 YAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
Y P SA AI+ ++ + L V R K S
Sbjct: 366 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 400
Score = 98 (39.6 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 27/101 (26%), Positives = 50/101 (49%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
++ + + K E+ +R FS G+I + +++R DG SR AF+ F T A+ AIK
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 81
Query: 62 NKSY-LDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE 101
++S ++ C S I K D + R + +++ +
Sbjct: 82 HQSQTMEGC--SSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 120
Score = 95 (38.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 44/192 (22%), Positives = 77/192 (40%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+ S K +E +LF+ + E+++R FS FG + E I+ D S+G A
Sbjct: 9 PADSEKS---NAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGL-SRGCA 64
Query: 344 YVLYAIPESASRAIEVLDNS-IFQG--RLLHVMPARHKKSSDKQELHNSTSQGTKTLKQX 400
+V ++ A AI+ + S +G + V A +K +++ L +Q + L
Sbjct: 65 FVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLN-- 122
Query: 401 XXXXXKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
+ G T + +L + T N+ G+ + + A L L
Sbjct: 123 TATWGNLTGLGGLTPQYLALLQQA-TSSSNLGAFSGIQQ--MAGMNALQLQNLATLAAAA 179
Query: 461 VIAETKKALTNA 472
A+T TNA
Sbjct: 180 AAAQTSATSTNA 191
Score = 79 (32.9 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 34/137 (24%), Positives = 66/137 (48%)
Query: 568 DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKT 627
D L+Q+ + G Q+ A ++LL+QQ + A + E +LF+ +L +
Sbjct: 276 DALTQAYS--GIQQYAAAALPTLYSQSLLQQQ----SAAGSQKEGPEGANLFIYHLPQEF 329
Query: 628 CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687
D+++ + F + G ++S KV + N+S FGF+ +D+ +A + + G +
Sbjct: 330 GDQDILQMF---MPFGNVISAKV--FIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQI 384
Query: 688 DGHALILQLCHAKKDEQ 704
L +QL +K D +
Sbjct: 385 GMKRLKVQLKRSKNDSK 401
Score = 37 (18.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRS 493
AL Q+++ A N G+ + L +AG D L ++
Sbjct: 245 ALAVAQMLSGM--AALNGGLGATGLTNGTAGTMDALTQA 281
WARNING: HSPs involving 983 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 731 689 0.00080 121 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1233
No. of states in DFA: 615 (65 KB)
Total size of DFA: 322 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.27u 0.08s 68.35t Elapsed: 00:00:04
Total cpu time: 68.37u 0.08s 68.45t Elapsed: 00:00:04
Start: Mon May 20 20:49:43 2013 End: Mon May 20 20:49:47 2013
WARNINGS ISSUED: 2