BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037049
(731 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 265/766 (34%), Positives = 427/766 (55%), Gaps = 72/766 (9%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VK LPKY TE++LR+FFS++G++TD KLM+ ++G+SR+FAFIG+++ AE A+KY
Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAK---RGEKKT 117
FNKS++DT RI E A+ DP +P + + K+E++ +DE+ +L + + +K+
Sbjct: 62 FNKSFIDTARIEVEFAKTFSDPTVPLSF-KEKRKREEQKLKDEQERLLEQELRAQAKKQK 120
Query: 118 IEKVTENDD-----PQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVS-ENISQAIKG 171
+ +E DD P+L E+++VM+P + K WANDT+ AD S +++ A+ G
Sbjct: 121 TKSTSEIDDEIASNPKLREYMEVMKPSHQVKSWANDTI----ADGSGGPSVQDLENALNG 176
Query: 172 GEKSITLHVKSDKSNVITDSQATEKSKNAAAD------------------ELMSDMDYFK 213
+S DKSN+ + + S + D E+MS D
Sbjct: 177 NNESPV-----DKSNIEVVNTVEDASDDEYNDFKELSNKHGENEDEEEEEEMMSLGDLPT 231
Query: 214 SRVKKDWSDSESEDDSAGDDDDDDDGEEEEEEENDHNGDSNEECDSIIKDSIHSGVGEED 273
+ KD ++S E+ +A ++ D + + NG+ E + + + + V ++
Sbjct: 232 NEENKDKNES-GENLAANENISDLEWLKSRSTRIKENGEVPEIVPEVKEVNEVTEVTQQS 290
Query: 274 ANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD 333
N + P + + Q++ E+GRLF+RN+ Y A+E++ R FS++G + EVHI +D
Sbjct: 291 DNEPELTP------EEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAID 344
Query: 334 KDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTS 391
T +SKG YV + E A+RA LD IFQGRLLH++PA KK D+ +L N
Sbjct: 345 TRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKKDHRLDEFDLKNL-- 402
Query: 392 QGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLA 451
LK++RE ++KA +A+ +WNSL+M D V+E++A K GV+KS L+D E + A
Sbjct: 403 ----PLKKQRELKKKA-QAAKTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSA 457
Query: 452 VRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGEL 511
V+ AL E VI + +K + GV+++S D +R + + LVKN P+ ++ E+
Sbjct: 458 VKQALAEAHVIGDVRKYFEDRGVDLTSF--------DKKERDDKIILVKNFPFGTTIDEI 509
Query: 512 AKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLS 571
++F +G L ++++P T+A++ F + A AAF LAYKR+K LYLE P D+ +
Sbjct: 510 GELFSAYGQLKRMLMPPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFT 569
Query: 572 QSSTSK------GNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNF 625
+ T+ Q+N+ V +AK + E E D +I+ + + ++FVKNLNF
Sbjct: 570 REPTTNEVATIPEQQQNEHAV---EAKISANEILGESKEDDEIESVQGPTVAVFVKNLNF 626
Query: 626 KTCDENLRKHFGEHIKEGRILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQG 684
T + L F + + + +VK K KN GK +SMGFGF+EF + E A L G
Sbjct: 627 ATTVQALSDLF-KPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDG 685
Query: 685 TILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+LDGH L L+L H + +K S+K++++N+ FEA RK
Sbjct: 686 HVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRK 731
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 622 NLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681
NL F+ ++L + FG G++ SV+V K + GF F+EF+ ++ A
Sbjct: 723 NLPFEATRKDLLELFGAF---GQLKSVRVPKKFDQS---ARGFAFVEFNLMKEAETAMSQ 776
Query: 682 LQGTILDGHALILQLCHAKKD--------EQVVKKAEKDKSSTKLLVRNVA 724
L+G L G L++Q +A++D E++ KK +K ++ L +A
Sbjct: 777 LEGVHLLGRRLVMQ--YAEQDPENAEVEIERMTKKVKKQVATQNLAAARLA 825
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 305 NLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSI 364
NLP+ AT +L E F FG + V V K + ++G A+V + + + A A+ L+
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVR-VPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVH 781
Query: 365 FQGRLLHVMPARHKKSSDKQELHNST 390
GR L + A + + E+ T
Sbjct: 782 LLGRRLVMQYAEQDPENAEVEIERMT 807
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 501 NLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYKRY 555
NLP++++ +L ++FG FG L V +P S + A V F EA A L
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHL 782
Query: 556 KGVPLYLEWAPSD 568
G L +++A D
Sbjct: 783 LGRRLVMQYAEQD 795
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 7 NLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66
NLP T L + F G++ ++ + D +R FAF+ F +EAE A+ +L
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHL 782
Query: 67 DTCRISCEIARKVGDP 82
R+ + A + DP
Sbjct: 783 LGRRLVMQYAEQ--DP 796
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 263/771 (34%), Positives = 420/771 (54%), Gaps = 80/771 (10%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ V+ LP Y+T+ RLR+ FSQKG +TD KLMR DG SR+F F+G+R+EQEA++A+ Y
Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPR--------------PWSRYSLKKEKEVSEDEKNP 106
FN++++DT RIS E+A+K+GD + P S ++ D+ +
Sbjct: 62 FNRTFIDTSRISIELAKKIGDEELVHQREERRNRRNAGAGPEGSASTSDARKRKADKSD- 120
Query: 107 VLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWAND------TLIGLMADQKAK 160
++ E +K + EF+ VMQP+ K K W N+ T+ ++A ++A
Sbjct: 121 ---TQQEEGSGKKKPKKGGAISFEEFMSVMQPKAKRKAWQNEDALPEQTMQDIVAPEEAI 177
Query: 161 VSENISQAIKGGEKSITLHVKSDKSNVITDS--QATEKSKNAAADELMSDMDYFKSRVK- 217
+ +A+K + + ++ + DS + T + AA D ++D +Y + R+K
Sbjct: 178 QKKAARKALKKADAAAAATATAESTAAQPDSGREETPEPDAAANDVGLTDEEYMRLRMKH 237
Query: 218 KDWSDSES-EDDSAGDDDDDDDGEE-----------EEEEENDHNGDSNEECDSIIKDSI 265
+ +D ++ E S+G + + D E+ E E+E H D EC
Sbjct: 238 RVGTDLDTLEQSSSGPEFEQSDNEKDDDDAAADSDPESEDEPIH--DQGFECKQAEMQRK 295
Query: 266 HSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNV 325
E+D ++VD +++ESGRLF+RNLP+ A+ DE+ F FG V
Sbjct: 296 AQQAAEKDQ--KLVD-------------QIMESGRLFIRNLPFAASGDEILAFFESFGTV 340
Query: 326 SEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQE 385
+VHI +DK TK SKG+A+V ++ P A A D S FQGRLLH++PA +K +
Sbjct: 341 KQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDA----- 395
Query: 386 LHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDR 445
L + S+ T TLKQ R E++K +A+ + W+ L+M D V +IA + GV+KSD+L+
Sbjct: 396 LAETGSKKTATLKQARAEQKK-QDATKDFN-WSMLYMSSDAVASSIADRLGVNKSDILNP 453
Query: 446 EAN----DLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKN 501
AN + AVR+AL ET++I ETK+ L G+NV + F K RS+ LVKN
Sbjct: 454 GANGGADNAAVRLALAETRIIQETKEFLAQQGINVDA---FQGAKG---PRSDTTILVKN 507
Query: 502 LPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561
+PY +S E+ K+FG+ G +DKV++P + T+A+V EA AF+ +AYKR+KG LY
Sbjct: 508 IPYGTSAEEVEKLFGEHGEVDKVLIPPSGTIAVVEMPVVNEARLAFRAIAYKRFKGGILY 567
Query: 562 LEWAPSDVLSQSSTSKGNQKNDAVVGEH-DAKRALLEQQLEGVTDADIDPDRVESRSLFV 620
LE AP +L+Q + K +VG+ D+ ++ L+G A + V+ +L+V
Sbjct: 568 LEKAPVGLLTQHKVGEKVVKQAPIVGKSIDSSNPSVD--LDGPAGAGAGDEAVDGATLYV 625
Query: 621 KNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVC 679
KNL+F T DE L F + + ++ K + G +SMG+GF+ F S++ A
Sbjct: 626 KNLSFSTTDERLTAFF-HGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQ 684
Query: 680 RDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
+ + G +LD H L+ + A+++ + + STK+L++N+ FEA ++
Sbjct: 685 KAMDGKVLDAHTLV--VTFARRNAEASTTSISSGGSTKILIKNLPFEATKR 733
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ +KNL F+ ++R F +G++ SV++ K N + GFGF+E+ +V A +
Sbjct: 721 ILIKNLPFEATKRDIRDLFSS---QGQLKSVRLPKKFDN---TTRGFGFVEYSTVREAQS 774
Query: 678 VCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTK 717
L+ T L G L+LQ H Q ++ + +S TK
Sbjct: 775 AMEALKHTHLLGRHLVLQWSHLASSTQ--QQVDMQRSKTK 812
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
+I +KNLP T+ +RD FS +G++ +L + D +R F F+ + T +EA+ A++
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779
Query: 62 NKSYL 66
++L
Sbjct: 780 KHTHL 784
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ ++R+ FS G + V + D ++G +V Y+ A A+E
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNT-TRGFGFVEYSTVREAQSAMEA 778
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQEL 386
L ++ GR L V+ H SS +Q++
Sbjct: 779 LKHTHLLGRHL-VLQWSHLASSTQQQV 804
Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 497 FLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLA 551
L+KNLP+++++ ++ +F G L V LP +T+ V + EA +A + L
Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALK 780
Query: 552 YKRYKGVPLYLEWA 565
+ G L L+W+
Sbjct: 781 HTHLLGRHLVLQWS 794
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 259/776 (33%), Positives = 408/776 (52%), Gaps = 106/776 (13%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQ----------KGEITDAKLMRTKDGKSRQFAFIGFRT 50
SR+ VKNLP Y+ E L+ FS +ITD K++R +DGK+R+F F+GFR+
Sbjct: 2 SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRARDGKTRRFGFVGFRS 61
Query: 51 EQEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMP---RPWSRYSLKKEKEVSEDEKNPV 107
++ AE A+KYF+ S++++ +IS +A DPN+P R R + ++ +E +ED++
Sbjct: 62 DETAEAAVKYFDTSFINSTKISVAVAMTFTDPNVPLSSRERKRQAAQRAREDAEDDREAK 121
Query: 108 LAAKRGEKKTIEKVT---ENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSEN 164
A + TI+ + DP+L ++L MQ R +K WAN+ G +A++ +
Sbjct: 122 KARYLEKPMTIDDINGLGNASDPRLADYLDAMQVRSNAKTWANND-AGAVANEPQVIQST 180
Query: 165 ISQ------AIKGGEKSITLHVKSDKSN-----------------VITDSQATEKSKNAA 201
S KG ++ + ++S VI D A
Sbjct: 181 ASDDEYDEFTGKGDDEIDEDEDEEEESENKKDDDNEEAEEDEEDPVIED--------GLA 232
Query: 202 ADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGEEEEEEENDHNGDSNEECDSII 261
AD +SDMD+ + R + +GE EE+ EN H +E
Sbjct: 233 ADPGVSDMDWLRQRQTR-----------------IKEGEPEEDRENRHTESKSEG----- 270
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321
G G VD PS V + ++GRLF+RNL YTA E++ R+ FS+
Sbjct: 271 ----KKGKGNAPKAATPVDE-EPSEDPTIVS--IRKTGRLFLRNLLYTAKEEDFRQLFSQ 323
Query: 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
+G + EVH+ ++ T + KG A+V + PE+A A E D IFQGRLLH++P + KK
Sbjct: 324 YGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKDY 383
Query: 382 DKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSD 441
++ + H+ + LK+++E +RKA EA+ +WNSL+M D V+E++A+ G+ KS+
Sbjct: 384 NRLDEHDLKNL---PLKKQQELKRKA-EAAKQQFSWNSLYMNQDAVMESVAKSMGIKKSE 439
Query: 442 LLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKN 501
L+D +++D AV+ AL E VI + K GV+++S D R + V LVKN
Sbjct: 440 LIDPDSSDAAVKQALAEATVIGDVKSYFEKMGVDLASF--------DNKDRDDRVILVKN 491
Query: 502 LPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561
P+ +++ E+A+MF ++G L KV++P T+A+V+F +A AAF LA++R+K LY
Sbjct: 492 FPFGTTQPEIAEMFSEYGDLYKVMMPPAGTIAIVIFKHIPDARAAFAKLAFRRFKTSILY 551
Query: 562 LEWAPSDVLSQSSTSKGNQKNDAVVGEH--DAKRALLEQQLEG--VTDADIDPDR--VES 615
LE P ++L N+K ++ EH K +E +L V D + +R S
Sbjct: 552 LEKGPKNLLP-------NEKMESDEVEHVKQDKIVTIEDKLSASDVMDTGSNDERPATAS 604
Query: 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKN-GKNVSMGFGFIEFDSVET 674
S+FVKNLNFKT L F + + + VK+K KN GK +SMGFGF+EF S E
Sbjct: 605 TSVFVKNLNFKTTSRVLTDAF-KALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663
Query: 675 ATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
A + + G +LDGH L L++ + +DE+ + K +K+L++N+ FEA +K
Sbjct: 664 AEIAQKAMDGHVLDGHKLQLKISNRGQDEETTET--KKAIDSKILIKNLPFEATKK 717
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 143/347 (41%), Gaps = 66/347 (19%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+ V+N P+ T+ E+ E FS++G++ +V + + IA V++ A A L
Sbjct: 487 ILVKNFPFGTTQPEIAEMFSEYGDLYKVMM------PPAGTIAIVIFKHIPDARAAFAKL 540
Query: 361 DNSIFQGRLLHV-------MP--------ARHKK--------------------SSDKQE 385
F+ +L++ +P H K S+D++
Sbjct: 541 AFRRFKTSILYLEKGPKNLLPNEKMESDEVEHVKQDKIVTIEDKLSASDVMDTGSNDERP 600
Query: 386 LHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLF-----MRPDTVVENIARKHGVSKS 440
STS K L + R ++A KA + M+PD+ + G
Sbjct: 601 ATASTSVFVKNL-NFKTTSRVLTDA---FKALDGFLVAQVKMKPDSKNKGKFLSMGFGFV 656
Query: 441 DLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVK 500
+ +EA ++A + G + + ++N G + + T+ K + L+K
Sbjct: 657 EFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEET--------TETKKAIDSKILIK 708
Query: 501 NLPYDSSEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKRY 555
NLP+++++ ++ K+FG FGSL V +P ++ A ++ EA A L
Sbjct: 709 NLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHL 768
Query: 556 KGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG 602
G L L++A +D S+ + ++ A V + A+R+ + +L G
Sbjct: 769 LGRRLVLQYAQADA---SNAEEEIERMQATVSKQAAQRSFADMKLAG 812
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ +KNL F+ ++++K FG G + +V+V K + S GF F E+ S + A +
Sbjct: 705 ILIKNLPFEATKKDVQKLFGAF---GSLKTVRVPKKFNSE---SRGFAFAEYVSAKEAEH 758
Query: 678 VCRDLQGTILDGHALILQLCHA 699
LQGT L G L+LQ A
Sbjct: 759 AMSALQGTHLLGRRLVLQYAQA 780
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ ++++ F FG++ V V K S+G A+ Y + A A+
Sbjct: 704 KILIKNLPFEATKKDVQKLFGAFGSLKTVR-VPKKFNSESRGFAFAEYVSAKEAEHAMSA 762
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQR 400
L + GR L + A+ S+ ++E+ + +K QR
Sbjct: 763 LQGTHLLGRRLVLQYAQADASNAEEEIERMQATVSKQAAQR 803
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S+I +KNLP T+ ++ F G + ++ + + +SR FAF + + +EAE A+
Sbjct: 703 SKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSA 762
Query: 61 FNKSYLDTCRISCEIAR 77
++L R+ + A+
Sbjct: 763 LQGTHLLGRRLVLQYAQ 779
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 262/826 (31%), Positives = 425/826 (51%), Gaps = 146/826 (17%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGE---------------ITDAKLMRTKDGKSRQFAF 45
SRI VK LP Y+T+D LR+ F+++ ITD K++R ++G+SR+F F
Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61
Query: 46 IGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKN 105
IG+R E++A +A++YFN S+++T +I +A+ DP +P+P + K E E+
Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEEK 121
Query: 106 PVLAAKRGEKKTIEKVTENDD------PQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159
+ R +KK E N D QL EF++ M+P + W + + D+K
Sbjct: 122 LLQEENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSSQVTSWEKVGIDKSIEDEKL 181
Query: 160 KVSENISQAIKGGEKSITLHV--------KSDKSNVITDSQA------------------ 193
K E S +++G S+ H K + N++ ++++
Sbjct: 182 KREEEDS-SVQGN--SLLAHALALKEENNKDEAPNLVIENESDDEYSALNRNRDEDQEDA 238
Query: 194 ------------------------------TEKSKNAAADELMSDMDYFKS-RVKKDWSD 222
EK +N A DE +SD+D+FK RV+ S+
Sbjct: 239 GEEEKMISISNLKDTDIGLVNDDANSDEKENEKRRNLAQDEKVSDLDWFKQRRVRIKESE 298
Query: 223 SESEDDSAGDDDDDDDGEEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPG 282
+E+ + S+ + + NE D+ ++ V
Sbjct: 299 AETREKSSS-----------------YATEQNESLDTKKEEQPERAV------------- 328
Query: 283 NPSSSSKDVQQE-VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKG 341
P + +++ E + ++GRLF+RN+ YT+ E++ R+ FS FG + EVH+ +D T +SKG
Sbjct: 329 -PQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKG 387
Query: 342 IAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTSQGTKTLKQ 399
AYVL+ ++A A LD IFQGRLLH++P KKS D+ +L N LK+
Sbjct: 388 FAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNM------PLKK 441
Query: 400 RREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459
++E +RKA+ AS T +WNSL+M D V+ ++A K G+ KS L+D E + AV+ AL E
Sbjct: 442 QKELKRKAA-ASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEA 500
Query: 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
VI + +K + GV+ L +FS K+ +R + V LVKN P+ ++ EL +MF +G
Sbjct: 501 HVIGDVRKYFESKGVD---LTKFSQLKSTN-QRDDKVILVKNFPFGTTREELGEMFLPYG 556
Query: 520 SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQ------- 572
L+++++P T+A+V F + A AAF L+YKR+K +YLE P D ++
Sbjct: 557 KLERLLMPPAGTIAIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGPKDCFTKPAEADDL 616
Query: 573 -SSTSKGNQKNDAVVGEHDAKRALLEQQ---LEGVTDADIDPDRVE--SRSLFVKNLNFK 626
++TS ++N V + L+E EG ++A D D ++ + S+F+KNLNF
Sbjct: 617 INNTSAKEEENPVEV--KPSSNDLMEANKDVTEGSSNAH-DEDVIDGPTVSIFIKNLNFS 673
Query: 627 TCDENLRKHFGEHIKEGRILS-VKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQG 684
T ++NL F + G +++ VK K K+ GK +SMGFGF+EF + E A V + G
Sbjct: 674 TTNQNLTDRF--KVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDG 731
Query: 685 TILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
T++DGH + L+L H + + K + +K S K++V+N+ FEA RK
Sbjct: 732 TVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRK 777
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
SG++ V+NLP+ AT ++ E F+ FG + V V K K ++G A+V + +P+ A A+
Sbjct: 762 SGKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKEAENAM 820
Query: 358 EVLDNSIFQGRLL 370
+ L GR L
Sbjct: 821 DQLHGVHLLGRRL 833
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 486 KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEP 540
KT K+S + +VKNLP++++ ++ ++F FG L V +P S + A V FL P
Sbjct: 755 KTKSNKKSGKI-IVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLP 813
Query: 541 VEAAAAFKGLAYKRYKGVPLYLEW 564
EA A L G L +++
Sbjct: 814 KEAENAMDQLHGVHLLGRRLVMQY 837
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
+I VKNLP T + + F+ G++ ++ + D +R FAF+ F +EAE A+
Sbjct: 764 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 823
Query: 62 NKSYLDTCRISCE 74
+ +L R+ +
Sbjct: 824 HGVHLLGRRLVMQ 836
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S + VKNL F+ +++ + F G++ SV+V K + GF F+EF +
Sbjct: 762 SGKIIVKNLPFEATRKDVFELFNSF---GQLKSVRVPKKFDKS---ARGFAFVEFLLPKE 815
Query: 675 ATNVCRDLQGTILDGHALILQ 695
A N L G L G L++Q
Sbjct: 816 AENAMDQLHGVHLLGRRLVMQ 836
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 270/834 (32%), Positives = 415/834 (49%), Gaps = 173/834 (20%)
Query: 1 SRICVKNLPKYVTEDRLRDF----FSQKGE-------ITDAKLMRTKDGKSRQFAFIGFR 49
SR+ VK LP Y+ EDRLRD +QK + ++D KLM+ +DG+SR+FAFIGFR
Sbjct: 2 SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61
Query: 50 TEQEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMP---RPWSRYSLKKEKEVSEDEKNP 106
E++A + + YFN +++DT +I +A+ DP +P R R +LK+ +E E
Sbjct: 62 DEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMREKRREALKRLREREELLLAD 121
Query: 107 VLAAKR----------GEKKTIE-KVTENDDPQLLEFLQVMQPRVKSKMW---------- 145
+++ G+K I+ ++ +N QL EF+ M+P + W
Sbjct: 122 KKDSQKKQKSDSNNDGGKKHDIDAEIAKNK--QLQEFINTMKPSSQVTSWETVQSSKTQG 179
Query: 146 ----ANDTLIGLMADQKAKVSENISQAI--KGGEKS-------------------ITLHV 180
A D +G M+ +SQA+ KG + ++L+
Sbjct: 180 EDEEAADDEVGEMSSNPL-----LSQALALKGNSRDADEDTDMFKLPGNESDDEYVSLNG 234
Query: 181 KSDKSNV-----------ITDSQATEKSKNAAADELMSDMDYFKSR-VK-KDWSDSESED 227
S+ +N D+ + + A DE +SD+D+ K+R V+ KD +D+
Sbjct: 235 GSNNANTDEPEPQMMSLDTFDTAGPTSTDDMAKDEAVSDLDWLKNRRVRIKDGADTPVSK 294
Query: 228 DSAGDDDDDDDGEEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSS 287
D + EE E E + + EE S+ K
Sbjct: 295 QQQQPDTEQQQPEETEVETSQES----EEEKSLKK------------------------- 325
Query: 288 SKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLY 347
+ E+GRLF+RN+ YTATED+ R+ FS +G + EVHI VD T +SKG AYVL+
Sbjct: 326 -------IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLF 378
Query: 348 AIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTSQGTKTLKQRREEER 405
++A+ A LD IFQGRLLH++PA KKS D+ +L N LK++RE +R
Sbjct: 379 KNADNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNL------PLKKQRELKR 432
Query: 406 KASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAET 465
KA+ A T +WNSL+M D V+ ++A K G+ KS+L+D E + AV+ AL E VI +
Sbjct: 433 KANSAQ-QTFSWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDV 491
Query: 466 KKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVI 525
+K GV+++ + +R + V LVKN PY ++ E+A++F FG L +++
Sbjct: 492 RKFFETRGVDLTKFAQLKNS-----ERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLL 546
Query: 526 LPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAV 585
LP + T+A++ F + A AAF ++YKR+K +YLE PSD ++ + Q ++ V
Sbjct: 547 LPPSGTIAILQFRDVPAARAAFSKISYKRFKDGIIYLEKGPSDCFTRDA-----QGDELV 601
Query: 586 VGEHDAKRALL-EQQLEGVTDADIDPDRVESRSL-------------------------F 619
E D ++A E ++ G D +E++SL F
Sbjct: 602 ESETDIQKATAKEAKISGA-------DLLEAQSLPAADKDDHDDDDDDDDVQAGPTVSIF 654
Query: 620 VKNLNFKTCDENLRKHFGEHIKEGRILS-VKVKKHLKN-GKNVSMGFGFIEFDSVETATN 677
+KNLNF T + L + F G +++ VK K K GK +SMGFGF EF + E A
Sbjct: 655 IKNLNFSTTSQQLTEKFKPF--NGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANA 712
Query: 678 VCRDLQGTILDGHALILQLCHAKKDEQV-VKKAEKDKSSTKLLVRNVAFEAQRK 730
V ++GTILDGH L L+L H + +K K+ K++V+N+ FEA RK
Sbjct: 713 VISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRK 766
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G++ V+NLP+ AT ++ E FS FG + V V K K ++G A+V + +P+ A A++
Sbjct: 752 GKIIVKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKEAENAMD 810
Query: 359 VLDNSIFQGRLL 370
L GR L
Sbjct: 811 QLQGVHLLGRRL 822
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
+VKNLP++++ ++ ++F FG L V +P S + A V FL P EA A L
Sbjct: 755 IVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQG 814
Query: 553 KRYKGVPLYLEWA---PSDVLSQ 572
G L +E+ P DV Q
Sbjct: 815 VHLLGRRLVMEFVEQDPEDVEQQ 837
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 585 VVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644
++ H + L +Q T+A + + VKNL F+ +++ + F G+
Sbjct: 721 ILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSF---GQ 777
Query: 645 ILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA----- 699
+ SV+V K + GF F+EF + A N LQG L G L+++
Sbjct: 778 LKSVRVPKKFDKS---ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDPEDV 834
Query: 700 -KKDEQVVKKAEKDKSSTKLLVRNVAFEAQRKI 731
++ E++ +K +K ++TK + N+ +RKI
Sbjct: 835 EQQIEKMTRKVKKQVNTTK--IANMRNSGKRKI 865
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
+I VKNLP T + + FS G++ ++ + D +R FAF+ F +EAE A+
Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812
Query: 62 NKSYLDTCRISCEIARKVGDP 82
+L R+ E + DP
Sbjct: 813 QGVHLLGRRLVMEFVEQ--DP 831
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 256/786 (32%), Positives = 419/786 (53%), Gaps = 91/786 (11%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQK-----------GEITDAKLMRTKDGKSRQFAFIGFR 49
SR+ VK LP Y+TE L+ F+++ G ITD ++++ ++GKSR+FAFIG++
Sbjct: 2 SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYK 61
Query: 50 TEQEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLA 109
EQ+A +A+ YF+ S++ T +I ++A+ DP +P+ S+K++K +
Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMAKSFADPRVPK-----SMKEKKREALKRLREKEE 116
Query: 110 AKRGEKKTIEKVTEND-----------DPQLLEFLQVMQPRVKSKMWANDTLI-----GL 153
EK KV + D QL EF++ M+P ++ W T GL
Sbjct: 117 KLLEEKNKKLKVQDTKSKINIDAEIEKDKQLKEFIETMKPSAQTSSWDKITETAEPESGL 176
Query: 154 MADQKA--KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDY 211
+Q+ + S N++ +K H S K DS S N A + SD
Sbjct: 177 AEEQELDDEESSNVNPLLK--------HALSMKKGDENDSDDEYMSFNNADSKAGSDESN 228
Query: 212 FKSRVKKDWSDSESEDDSAGDDDDDDDGEEEEEEENDHNGDSNEECDSIIKDSIHSGVGE 271
+ ++ S+ +++ + + +DDG + EE +D + I+++ VGE
Sbjct: 229 EEEKMI-SLSELPVQNEESSAEPKEDDGLAKNEEISDMDWIKQRRVR--IREN-GEKVGE 284
Query: 272 EDANG---EIVDPGNPSSSSKDVQQEVLE----------SGRLFVRNLPYTATEDELREH 318
E A + + + ++ ++++Q+E+ + +GRLF+RN+ Y++TED+ ++
Sbjct: 285 EFATNVQDKESEENSQATPAEELQEEIPDEEQAIAKIQKTGRLFLRNILYSSTEDDFKKL 344
Query: 319 FSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378
FS +G + EVH+ VD T SKG AYVL+A PE A +A LD IFQGRLLH++ A
Sbjct: 345 FSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHILAADEM 404
Query: 379 KSS--DKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHG 436
K D+ +L N LK++RE ++KA+ + T +WNSL+M D V+ ++A K G
Sbjct: 405 KDHRLDEFDLKNM------PLKKQRELKKKAAASK-ATFSWNSLYMNQDAVLGSVAAKLG 457
Query: 437 VSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHV 496
V K+DL+D E ++ AV+ AL E VI + +K GV+ L +FS K+ +R + V
Sbjct: 458 VQKADLIDPENSNSAVKQALAEAHVIGDVRKYFETKGVD---LTKFSNLKSPS-QRDDRV 513
Query: 497 FLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYK 556
LVKN P+ ++ EL ++F FG L+++++P T+A+V F + +AF LA+KR+K
Sbjct: 514 ILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRDIASGRSAFSKLAFKRFK 573
Query: 557 GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRA------LLEQQLEGVTDADIDP 610
G +YLE P D +++++++ ++D E AK A LLE T+ D
Sbjct: 574 GTVIYLEKGPKDCFTKAASNEDAMEHDE---EKSAKEAGPSSADLLESVSSKKTEDKEDE 630
Query: 611 DRV----ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS-VKVKKHLKN-GKNVSMGF 664
D + S+F+KNLNFKT + L F + G +++ VK K K K +SMGF
Sbjct: 631 DEQVVDGPTVSIFIKNLNFKTTSQQLTDRF--KVFSGFVVAQVKTKPDPKQKNKVLSMGF 688
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVA 724
GF+EF + E AT V + GT++DGH + L+L H + + +K K + K++V+N+
Sbjct: 689 GFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEK--KKAKNGKIIVKNLP 746
Query: 725 FEAQRK 730
FEA RK
Sbjct: 747 FEATRK 752
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+G++ V+NLP+ AT ++ E F+ FG + V V K K ++G A+V + +P+ A A+
Sbjct: 737 NGKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFVLPKEAENAM 795
Query: 358 EVLDNSIFQGRLLHVMP 374
+ L GR L + P
Sbjct: 796 DQLQGVHLLGRRLVMQP 812
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 483 SAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVF 537
+AG + K N +VKNLP++++ ++ ++F FG L V +P S + A V F
Sbjct: 726 NAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEF 785
Query: 538 LEPVEAAAAFKGL 550
+ P EA A L
Sbjct: 786 VLPKEAENAMDQL 798
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ VKNL F+ +++ + F G++ SV+V K + GF F+EF + A N
Sbjct: 740 IIVKNLPFEATRKDVFELFNSF---GQLKSVRVPKKFDKS---ARGFAFVEFVLPKEAEN 793
Query: 678 VCRDLQGTILDGHALILQ 695
LQG L G L++Q
Sbjct: 794 AMDQLQGVHLLGRRLVMQ 811
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61
+I VKNLP T + + F+ G++ ++ + D +R FAF+ F +EAE A+
Sbjct: 739 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMDQL 798
Query: 62 NKSYLDTCRISCE 74
+L R+ +
Sbjct: 799 QGVHLLGRRLVMQ 811
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 260/781 (33%), Positives = 399/781 (51%), Gaps = 98/781 (12%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQ----KGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEE 56
SRI +KN+P+Y +++L + EITD + +TK+G SR+FAFIGF+ E++A++
Sbjct: 2 SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61
Query: 57 AIKYFNKSYLDTCRISCEIARKVGDPNMP-RPWSRYSLKK--------EKEVSEDEKNPV 107
AI+Y NKSY++T RI A N RP+S+Y+ K EKE
Sbjct: 62 AIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELKLQKKEKEEELRNLEEE 121
Query: 108 LAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWAN----DTLIG---LMADQKAK 160
A K+ + K + DP+ EFL++ S+ W N DT I + AD+
Sbjct: 122 KAKKKKDANLKRKFLDTLDPKAREFLKLSSSISNSRSWENEEVFDTEITNPVIPADEDDD 181
Query: 161 VSENISQAIKGGEKSI--TLHVKSDKSNVITDS--------------QATE--KSKNAAA 202
+++ A + SI T H + S V+ D QA E +KN+
Sbjct: 182 EYQDLPAAKRHEGDSIKSTEHDSTLDSGVVIDGREKSSSELHEEESEQAAEGDTAKNSGT 241
Query: 203 DEL--MSDMDYFK---SRVKKDWSDSESEDDSAGDD----DDDDDGEEEEEEENDHNGDS 253
D +SD ++ + +R+K+ E E GD+ D +++ E E ND D+
Sbjct: 242 DAQAPLSDDEWLRLHRTRIKE--KQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADA 299
Query: 254 NEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATED 313
S+++ + + V E++ N +++ E+ RLF+RNL Y+ ED
Sbjct: 300 -----SMLQKA-ENNVSEQERNIQLIS----------------ETKRLFLRNLTYSCAED 337
Query: 314 ELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373
+L+ F FG + +VH+ +DK T KG AY+ + + A RA LD FQGRLLHV+
Sbjct: 338 DLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVL 397
Query: 374 PARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIAR 433
PA+ + S L + + LK++RE +RK + AS +T +WNSL+M D VV ++A
Sbjct: 398 PAKARSSI----LLDDYALSKLPLKKQRELKRKNTAAS-STFSWNSLYMNADAVVTSLAS 452
Query: 434 KHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRS 493
+ GV K+D+LD ++D AV+ AL ET VI ETK GV++ + + + RS
Sbjct: 453 RLGVKKTDILDPTSSDSAVKQALTETHVIQETKNFFEEHGVDLDAFKNAA--------RS 504
Query: 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYK 553
++V LVKN PY +S EL +F FG L ++++P T+A++ FL + AF LAY
Sbjct: 505 DNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSKLAYT 564
Query: 554 RYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRV 613
R K LYLE AP DV + S G + V +A + E V DI + +
Sbjct: 565 RIKSSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTS------EKVGTEDI--ESL 616
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSV-KVKKHLKN-GKNVSMGFGFIEFDS 671
++ +++VKNLNF T E +K F EG + +V + K K GK +SMGFGF+EF
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPL--EGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
Query: 672 VETATNVCRDLQGTILDGHALILQLCHAKKD--EQVVKKAEKDKSSTKLLVRNVAFEAQR 729
+A + G +LDGH L ++L H D +V K+ TK+L++N+ FEA +
Sbjct: 675 KASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATK 734
Query: 730 K 730
K
Sbjct: 735 K 735
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ +KNL F+ ++++ G + G++ SV+V K + GF F EF + A N
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAY---GQLRSVRVPKKFDRS---ARGFAFAEFVTAREAAN 776
Query: 678 VCRDLQGTILDGHALILQLC 697
R L+ T L G L+LQ
Sbjct: 777 AMRALKNTHLLGRHLVLQYA 796
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP- 527
L++ GV+ ++ K D K L+KNLP+++++ ++ + G +G L V +P
Sbjct: 699 LSHQGVDAAA----EVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPK 754
Query: 528 ----STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
S + A F+ EAA A + L G L L++A
Sbjct: 755 KFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ +++ +G + V V K + ++G A+ + A+ A+
Sbjct: 722 KILIKNLPFEATKKDVQSLLGAYGQLRSVR-VPKKFDRSARGFAFAEFVTAREAANAMRA 780
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQ 384
L N+ GR L + A + D Q
Sbjct: 781 LKNTHLLGRHLVLQYASNATMDDMQ 805
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
++I +KNLP T+ ++ G++ ++ + D +R FAF F T +EA A++
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780
Query: 61 FNKSYL 66
++L
Sbjct: 781 LKNTHL 786
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 179/488 (36%), Positives = 277/488 (56%), Gaps = 55/488 (11%)
Query: 282 GNPSSSSKDVQQEVL----------ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIV 331
G P +++K Q +L ESGRLFVRNLPYT+TE++L + FSK+G +SE+H
Sbjct: 375 GAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYP 434
Query: 332 VDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTS 391
+D TK+ KG A++ + PE A +A +D +FQGR+LHV+P+ KK + + ++++
Sbjct: 435 IDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASE----DASA 490
Query: 392 QGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREA-NDL 450
G+ + K+++E + KA+ AS + WN+LFM P+ V + IA+K+ +KS + D E +
Sbjct: 491 LGSSSYKKKKEAQDKANSASSHN--WNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSV 548
Query: 451 AVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGE 510
AVR+ALGETQ++ E ++ L + GV++ S + +A +RS V LVKNLP + +
Sbjct: 549 AVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAA------ERSKTVILVKNLPAGTLAAQ 602
Query: 511 LAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVL 570
L + FG FGSL +V+LP A+V FLEP+EA AF+ LAY ++ VPLYLEWAP V
Sbjct: 603 LQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVF 662
Query: 571 SQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDR------------------ 612
S ++ K + D + A E +G T D +P
Sbjct: 663 SSTAPQK-KKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEE 721
Query: 613 -----VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGF 666
+ +LF+KNLNF T +E L++ F K G + S + KK K G +SMGFGF
Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFS---KVGTVKSCSISKKKNKAGVLLSMGFGF 778
Query: 667 IEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV----KKAEKDKSSTKLLVRN 722
+E+ E A + LQG ++DGH L +++ V K+ + ++++K+LVRN
Sbjct: 779 VEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRN 838
Query: 723 VAFEAQRK 730
+ F+A +
Sbjct: 839 IPFQAHSR 846
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 196/391 (50%), Gaps = 45/391 (11%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + E+R R F+ G +TD L TKDGK R+F FIGF++E+EA++A K+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLK--KEKEVSEDEKNPVLAAKRGEKKT- 117
FNKS++DT RI+ E + GDP PR WS+++ K + K+ +D P + +KK
Sbjct: 62 FNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVA 121
Query: 118 --IEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK-VSENISQAIKGGEK 174
+EK+ E D + EFL V Q R ++ WAND L + K+K S+ ++ G++
Sbjct: 122 GQLEKLKE--DTEFQEFLSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQE 179
Query: 175 SITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSR-VKKDWSDSESEDDSAGDD 233
S + + + + +A+ + K A EL SDMDY KS+ VK S S E++S +
Sbjct: 180 S-----EEEGAGEDLEEEASLEPKAAVQKEL-SDMDYLKSKMVKAGSSSSSEEEESEDEA 233
Query: 234 DDDDDGEEEEEEENDHNGDSNEECDSIIKDSIHSGVGEE-----------DANGEIVDPG 282
D+G E EEE++ ++++ G G+E +A E P
Sbjct: 234 VHCDEGSEAEEEDSS--------ATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPA 285
Query: 283 NPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGI 342
N Q+E + +R P+ TE + E + V+ + IV + ++ G
Sbjct: 286 N--------QKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKT-GY 335
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373
+V ++ E +A++ + GR + V
Sbjct: 336 IFVDFSNEEEVKQALKC-NREYMGGRYIEVF 365
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEA 543
K++ LV+N+P+ + E+ ++F FG L V LP T V FL +A
Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA 887
Query: 544 AAAFKGLAYKRY-KGVPLYLEWAPSDVLSQS 573
AF L + + G L LEWA S+V Q+
Sbjct: 888 KRAFNALCHSTHLYGRRLVLEWADSEVTLQA 918
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR--TKDGKSRQFAFIGFRTEQEAEEAI 58
S+I V+N+P +R+ FS GE+ +L + T G R F F+ F T+Q+A+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 59 KYF-NKSYLDTCRISCEIA 76
+ ++L R+ E A
Sbjct: 892 NALCHSTHLYGRRLVLEWA 910
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD-KDTKRSKGIAYVLYAIPESASRA 356
+ ++ VRN+P+ A E+RE FS FG + V + T +G +V + + A RA
Sbjct: 831 TSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Query: 357 IEVLDNSI-FQGRLL 370
L +S GR L
Sbjct: 891 FNALCHSTHLYGRRL 905
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK----SRQFAFIGFRTEQEAEEAI 58
+ +KNL TE++L++ FS+ G + + + K+ S F F+ +R ++A++A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 59 KYFNKSYLDTCRISCEIARKVGDP 82
K +D ++ I+ + P
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKP 815
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 170/466 (36%), Positives = 270/466 (57%), Gaps = 39/466 (8%)
Query: 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352
++V ESGR+FVRNL Y+ E++L + FSKFG +SE+HI +D D+K+SKGIA++LY IPE+
Sbjct: 355 EDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPEN 414
Query: 353 ASRAIEVLDNSIFQGRLLHVMPAR----HKKSSDKQELHNSTSQGTKTLKQRREEERKAS 408
A +A+ +D +FQGRL+HV+P + + S +K +N G+ + K +E+++K +
Sbjct: 415 AVQALNDMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTT 474
Query: 409 EASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKA 468
SG+T WN+LFMR D +V ++A ++ +++ LLD DLAVR+ L ET VI ETKK
Sbjct: 475 --SGSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKF 532
Query: 469 LTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS 528
L + GV + + G KRSN V LVKN+P+ + E EL ++F KFG L +V+L
Sbjct: 533 LEDQGVIIQDI------GNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSP 586
Query: 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSS----TSKGNQKNDA 584
+T+AL+ ++ P EA FK LAY ++ VPLYLEWAP V + K + +
Sbjct: 587 ARTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKS 646
Query: 585 VVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644
+D K + T ++ +++KNLN+KT +E L F + +K+
Sbjct: 647 SDSSNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKF-KSLKDYV 705
Query: 645 ILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703
+++ K + KN + + GFGFIEF S + A + L G+ +DG+ + L+L + K+E
Sbjct: 706 NVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKL--SDKNE 763
Query: 704 QVVKKAEK-------------------DKSSTKLLVRNVAFEAQRK 730
V++ K +K S+K++++N+ FE+ K
Sbjct: 764 TNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIK 809
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 581 KNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHI 640
KN+ V E + +R L E + + P++ S+ + +KNL F++ + +RK F +
Sbjct: 761 KNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSK-IIIKNLPFESTIKEIRKLFTAY- 818
Query: 641 KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700
G I SV++ K G GFGF+EF + E A N L + G L+LQ +A+
Sbjct: 819 --GEIQSVRIPKKPNGG---HRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQ--YAE 871
Query: 701 KDEQV 705
+D+ +
Sbjct: 872 QDKNI 876
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S ++ ++NLP+ +T E+R+ F+ +G + V I K +G +V + E A A+
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRI-PKKPNGGHRGFGFVEFLTEEEAKNAM 852
Query: 358 EVLDNSIFQGRLLHVMPA---------RHKKSSDKQELHNST 390
E L NS F GR L + A R K + D +++ NST
Sbjct: 853 EALGNSHFYGRHLVLQYAEQDKNIDELREKANLDYEKIKNST 894
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S+I +KNLP T +R F+ GEI ++ + +G R F F+ F TE+EA+ A++
Sbjct: 795 SKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEA 854
Query: 61 FNKSYL 66
S+
Sbjct: 855 LGNSHF 860
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
++KNLP++S+ E+ K+F +G + V +P + V FL EA A + L
Sbjct: 798 IIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGN 857
Query: 553 KRYKGVPLYLEWAPSD 568
+ G L L++A D
Sbjct: 858 SHFYGRHLVLQYAEQD 873
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ + R+ V+ LP T+ +EHF KFG V++ I+ K +S+ ++ ++ +SA
Sbjct: 1 MSNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKII--KKDGKSRLFGFIGFSTEQSAKN 58
Query: 356 AIEV 359
A+ +
Sbjct: 59 ALSL 62
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 289 bits (740), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 237/790 (30%), Positives = 372/790 (47%), Gaps = 142/790 (17%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+R+ V LP +T D+L+ F + +TDA ++ R+ F+GF++ + A++A+ Y
Sbjct: 4 TRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL-----PKRRIGFVGFKSSEAAQQAVSY 58
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEK 120
FNK+Y+ +IS +IA+ + R SR + +D L KR + TI+
Sbjct: 59 FNKTYMRMSKISVDIAKPIDAEPAHRKDSRTA------QPDDALGNNLKRKR-DGDTIK- 110
Query: 121 VTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHV 180
D + E+L ++Q K++ WAND DQ E
Sbjct: 111 -----DSKTQEYLSLLQQPSKTRTWAND-------DQLPDPDE----------------- 141
Query: 181 KSDKSNVITDSQATEKSKNAAAD--ELMSDMDYFKSRVKKDWSDSESEDDSAG--DDDDD 236
TDS A E+ + D E ++ K+++ +D ++S AG D+
Sbjct: 142 --------TDSHAQEQEQPFDVDDQEELTYAQRKKAKLGQDANESSHVPVVAGYQPTTDE 193
Query: 237 DDG----EEEEEEENDHNGDSNEECDS---IIKDSIHSGVGEEDANGEIVDPG---NPS- 285
DG E+ EEE D D DS K S G+ +ED P NP+
Sbjct: 194 SDGQPSPEKHEEELEDPQKDQAPVSDSDWLRSKTSRLLGLLDEDEQETFASPAAATNPTP 253
Query: 286 ------------SSSKDVQQEVLE----------------SGRLFVRNLPYTATEDELRE 317
S K + ++ + S RLFVRNL Y E EL
Sbjct: 254 IINSNVEKPEAESPEKPAESDLTKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEP 313
Query: 318 HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377
FS FG + E+H+ D SKG AYV YA P++A A LD IFQGRLLH++PA
Sbjct: 314 VFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQ 373
Query: 378 KKSS--DKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKH 435
KK+ D+ EL +K +++++ ++ EA+ +T +WNSL+M D V+ ++A +
Sbjct: 374 KKTYKLDEHEL-------SKLPLKKQKQIKRKQEAASSTFSWNSLYMNADAVMSSVAERI 426
Query: 436 GVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNH 495
GVSK+DLLD ++D AV+ A ET VI ETK GVN+ + ++ +R N
Sbjct: 427 GVSKADLLDPTSSDAAVKQAHAETHVIQETKAYFKANGVNLDAFKQ--------RERGNL 478
Query: 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRY 555
LVKN Y + +L K+F FG + ++++P + T+A+V F P EA AFK LAY++
Sbjct: 479 AILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPDEAQKAFKSLAYRKL 538
Query: 556 KGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADI------D 609
L+LE AP D+ + V +G + AD D
Sbjct: 539 GDSILFLEKAPKDLFEADVPPQNPLPETKAVS-------------QGFSTADTFAADEGD 585
Query: 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS-VKVKKHLKN-GKNVSMGFGFI 667
+ + + +LF+KNLNF T +++L + F +G + + +K K KN G+ +SMGFGF
Sbjct: 586 EEVMATATLFIKNLNFSTTNQSLIEAF--RPLDGFVSARIKTKPDPKNPGQTLSMGFGFA 643
Query: 668 EFDSVETATNVCRDLQGTILDGHALILQLCHA-------KKDEQVVKKAEKDKSSTKLLV 720
+F + A + G LD H L+++ H ++ E KK + TK+++
Sbjct: 644 DFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARR--TKIII 701
Query: 721 RNVAFEAQRK 730
+N+ F+A +K
Sbjct: 702 KNLPFQATKK 711
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ +KNL F+ +++R FG + G++ SV+V K + GFGF +F S A N
Sbjct: 699 IIIKNLPFQATKKDVRSLFGAY---GQLRSVRVPKKFDRS---ARGFGFADFVSAREAEN 752
Query: 678 VCRDLQGTILDGHALILQLCH 698
L+ T L G L+L+ +
Sbjct: 753 AMDALKNTHLLGRRLVLEFAN 773
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
++I +KNLP T+ +R F G++ ++ + D +R F F F + +EAE A+
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 756
Query: 61 FNKSYLDTCRISCEIA 76
++L R+ E A
Sbjct: 757 LKNTHLLGRRLVLEFA 772
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+ES R+FV LP T T D+L++HF +V++ H++ KR I +V + E+A +
Sbjct: 1 MESTRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL----PKRR--IGFVGFKSSEAAQQ 54
Query: 356 AIEVLDNSIFQ 366
A+ + + +
Sbjct: 55 AVSYFNKTYMR 65
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ ++R F +G + V V K + ++G + + A A++
Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVR-VPKKFDRSARGFGFADFVSAREAENAMDA 756
Query: 360 LDNSIFQGRLL 370
L N+ GR L
Sbjct: 757 LKNTHLLGRRL 767
Score = 36.2 bits (82), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
++KNLP+ +++ ++ +FG +G L V +P S + F+ EA A L
Sbjct: 700 IIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKN 759
Query: 553 KRYKGVPLYLEWA 565
G L LE+A
Sbjct: 760 THLLGRRLVLEFA 772
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/472 (37%), Positives = 269/472 (56%), Gaps = 56/472 (11%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
++++ +SGRLFVRNL YT++E++L + FS +G +SE+H +D TK+ KG A+V + PE
Sbjct: 393 EEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEAS 411
A +A +D +FQGR+LHV+P+ KK + ++ + + G+ + K+++E KA+ +S
Sbjct: 453 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQE----ANAPGS-SYKKKKEAMDKANSSS 507
Query: 412 GNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREA-NDLAVRIALGETQVIAETKKALT 470
+ WN+LFM P+ V + IA+K+ +KS + D E +AVR+ALGETQ++ E + L
Sbjct: 508 SHN--WNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLVQEVRSFLI 565
Query: 471 NAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530
+ GV + S + +A +RS V L KNLP + E+ + F +FGSL +V+LP
Sbjct: 566 DNGVCLDSFSQAAA------ERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG 619
Query: 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHD 590
A+V FLEP+EA AF+ LAY ++ VPLYLEWAP V + K +Q E
Sbjct: 620 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQH------EQP 673
Query: 591 AKRALLEQQLEGVTDADIDPDRVESR-------------------------SLFVKNLNF 625
A++A +EQ E V D + + VE +LF+KNLNF
Sbjct: 674 AEKAEVEQ--ETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNF 731
Query: 626 KTCDENLRKHFGEHIKEGRILSVKV-KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684
T +E L+ F K G I S + KK K G +SMGFGF+E+ E A + LQG
Sbjct: 732 STTEETLKGVFS---KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 788
Query: 685 TILDGHALILQLCHAKKDEQVV----KKAEKDKSSTKLLVRNVAFEA-QRKI 731
+DGH L +++ + K+ K ++++K+LVRN+ F+A QR+I
Sbjct: 789 HTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREI 840
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ VKNLP + E+R R F+ G +TD L TKDGK R+F FIGF++E+EA+ A+ +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61
Query: 61 FNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLK--KEKEVSEDE--KNPVLAAKRGEKK 116
F++S++DT RI+ E + GDP+ PR WS+++ K + K+ S+D + K+
Sbjct: 62 FHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPSDTKKDKKKKGPS 121
Query: 117 TIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSI 176
+EK+ E D + EFL + Q R + WAND L + K K S +
Sbjct: 122 DLEKLKE--DAKFQEFLSIHQKRTQVATWANDALEAKLPKAKTKASSDY----------- 168
Query: 177 TLHVKSDKSNVITDSQATEKS------------KNAAADELMSDMDYFKSRV 216
L+ SD SN + ++ E+ AA + +SDMDY KS++
Sbjct: 169 -LNFDSD-SNSDSGQESEEEPAREDPEEEQGLQPKAAVQKELSDMDYLKSKM 218
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 131/331 (39%), Gaps = 64/331 (19%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+ +NLP E++E FS+FG++ V + T A V + P A +A L
Sbjct: 586 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGIT------AIVEFLEPLEARKAFRHL 639
Query: 361 DNSIFQGRLLHVMPA--------------RHKKSSDKQELHNST---------------- 390
S F L++ A +H++ ++K E+ T
Sbjct: 640 AYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEA 699
Query: 391 SQGTKTLKQRREEERKASEASGNTKAWNSL-FMRPDTVVENIARKHGVSKSDLLDREAND 449
S G ++ EEE + G T +L F + ++ + K G KS + ++ N
Sbjct: 700 STGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK 759
Query: 450 LAVRIALG----ETQVIAETKKALTNAG----------VNVSSLEEFSA-----GKTDGL 490
V +++G E + + +KAL V +S A K
Sbjct: 760 AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPK 819
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-------LALVVFLEPVEA 543
K++ LV+N+P+ +++ E+ ++F FG L V LP T V F+ +A
Sbjct: 820 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 879
Query: 544 AAAFKGLAYKRY-KGVPLYLEWAPSDVLSQS 573
AF L + + G L LEWA S+V Q+
Sbjct: 880 KKAFNALCHSTHLYGRRLVLEWADSEVTVQT 910
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR--TKDGKSRQFAFIGFRTEQEAEEAI 58
S+I V+N+P + +R+ FS GE+ +L + T G R F F+ F T+Q+A++A
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 59 KYF-NKSYLDTCRISCEIA 76
+ ++L R+ E A
Sbjct: 884 NALCHSTHLYGRRLVLEWA 902
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD-KDTKRSKGIAYVLYAIPESASRA 356
+ ++ VRN+P+ A + E+RE FS FG + V + T +G +V + + A +A
Sbjct: 823 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882
Query: 357 IEVLDNSI-FQGRLL 370
L +S GR L
Sbjct: 883 FNALCHSTHLYGRRL 897
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK----SRQFAFIGFRTEQEAEEAI 58
+ +KNL TE+ L+ FS+ G I + + K+ S F F+ ++ ++A++A+
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 59 KYFNKSYLDTCRISCEIARKVGDPNM 84
K +D ++ I+ + P +
Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPAL 809
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 283 bits (723), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 235/768 (30%), Positives = 374/768 (48%), Gaps = 92/768 (11%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKG-EITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIK 59
SRI VKNLP +TE R FS +G ++TD KL+ +R F+G+++ ++A A+K
Sbjct: 5 SRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI-----PARHIGFVGYKSAEDAARAVK 59
Query: 60 YFNKSYLDTCRISCEIARKVGD--PNMPRPWSRYS-----------LKKEKEVSEDEKNP 106
YFN+S++ RIS +IA+ + D P P S L +V+
Sbjct: 60 YFNRSFIRMSRISVDIAKPIADSKPQHKSPSKGSSKDADPKNAPKVLPPNTKVTAAAVPK 119
Query: 107 VLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENIS 166
V AA K+ ++ V + DP+L E+L VM KM + L V E ++
Sbjct: 120 VEAAPDAPKRKLD-VLDEADPKLQEYLDVMGAHPSKKMRNAEGL-------PTTVDEVLA 171
Query: 167 QAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESE 226
A+ G + + + D + +++ AD+ M D S SES
Sbjct: 172 PAVPAGLED------GESDDEYEDIPSRTHNQSHTADQEMVDAPLAAS-----AEPSESA 220
Query: 227 DDSAGDDDDDD----------DGEEEEEE----ENDHNGDSNEECDSIIKDSIHSGVGEE 272
+ D DDD D + E+ +G + S ++ S EE
Sbjct: 221 PPVSLDATDDDWLRSRTNRLLDLVDPEDAAFALRPAASGSAAVSVPSTSVENTASAKPEE 280
Query: 273 DANGEIVDPGNPSSSSKDVQQEVLE-SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIV 331
+ + S+ + ++E + RLF+RNL YT TED++REHF+KFG + EVH+
Sbjct: 281 HPAEDSREMAATSTHDPESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVP 340
Query: 332 VDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTS 391
+D SKG A + Y P SA A + D ++FQGR++H++PA K+ + E S
Sbjct: 341 LDSK-GHSKGFAMIRYEKPASALAAFQT-DGTVFQGRIVHILPAAAKRENKLDEFALS-- 396
Query: 392 QGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLA 451
K ++++ RK +EA+ +T WNSLFM D V +A + GVSK++LLD A
Sbjct: 397 ---KLPLKKQQLLRKKAEAASSTFNWNSLFMSQDAVNTAMAERLGVSKAELLDPTDASAA 453
Query: 452 VRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGEL 511
V+ A+ ET VI E K+ GVN+ + KT +R + LVKN+ + E EL
Sbjct: 454 VKQAVAETTVIQEAKQYFAANGVNIEAF------KTQ--QRGDTTILVKNIKNTTIE-EL 504
Query: 512 AKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLS 571
+F + G++ +V++P + T+A+V F +PV+ AF AY R+K L+LE P + +
Sbjct: 505 RTLFEEHGTVLRVLMPPSGTIAIVQFAQPVQCRTAFARKAYSRFKDSVLFLEKGPKGLFT 564
Query: 572 QSSTSKGNQKNDAVVGEHDAKRALLEQ-QLEGVTDADIDPDRVESRSLFVKNLNFKTCDE 630
D V DA+ A +++ + + + D +++E+ SLFV+NLNF T +
Sbjct: 565 -----------DNVAVPTDARPAGVQKPSVADLLERDDAEEQLETSSLFVRNLNFSTTSQ 613
Query: 631 NLRKHFGEHIKEGRILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDG 689
L F +H+ VK K K G+ +SMGFGF+ F + + A + + G +LD
Sbjct: 614 GLTDAF-KHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDA 672
Query: 690 HALILQLCH-------AKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
H + ++ H ++ E + KKA TKL+V+N+ FE +K
Sbjct: 673 HKISVKASHRGLDAAEERRREDMAKKAA--NQGTKLVVKNLPFEVTKK 718
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
S R+FV+NLP T TE E R+HFS G V++V ++ ++ I +V Y E A+RA
Sbjct: 4 SSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI------PARHIGFVGYKSAEDAARA 57
Query: 357 IEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGT 394
++ + S + + V A K +D + H S S+G+
Sbjct: 58 VKYFNRSFIRMSRISVDIA--KPIADSKPQHKSPSKGS 93
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+++ VKNLP VT+ +R FS G++ ++ + + SR FAF F T +EA A
Sbjct: 704 TKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNS 763
Query: 61 FNKSYLDTCRISCEIAR 77
+++ R+ + A+
Sbjct: 764 LKDTHILGRRLVIDFAQ 780
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
L VKNL F+ + +R F + G+++++++ K S GF F EF + + A N
Sbjct: 706 LVVKNLPFEVTKKEVRTLFSAY---GKLVALRIPKKFNQS---SRGFAFAEFSTAKEALN 759
Query: 678 VCRDLQGTILDGHALILQLCHA 699
L+ T + G L++ A
Sbjct: 760 AFNSLKDTHILGRRLVIDFAQA 781
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L V+NLP+ T+ E+R FS +G + + I K + S+G A+ ++ + A A
Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRI-PKKFNQSSRGFAFAEFSTAKEALNAFNS 763
Query: 360 LDNSIFQGRLLHV 372
L ++ GR L +
Sbjct: 764 LKDTHILGRRLVI 776
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 497 FLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLA 551
+VKNLP++ ++ E+ +F +G L + +P S++ A F EA AF L
Sbjct: 706 LVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSLK 765
Query: 552 YKRYKGVPLYLEWAPS-DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG-----VTD 605
G L +++A + D+ + + +K A V K AL QQL G VT
Sbjct: 766 DTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQVN----KVAL--QQLTGTGRAKVTI 819
Query: 606 ADIDPDRV 613
D D D V
Sbjct: 820 GDNDEDEV 827
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 271 bits (694), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 171/444 (38%), Positives = 258/444 (58%), Gaps = 28/444 (6%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+GRLF+RN+ Y ATE++ ++ FS +G + EVH+ VD T +SKG AYVL+ PE A+ A
Sbjct: 300 TGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAY 359
Query: 358 EVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTSQGTKTLKQRREEERKASEASGNTK 415
LD IFQGRLLH++PA KK+ D+ +L N LK++RE +RKA+ A+ T
Sbjct: 360 IELDKQIFQGRLLHILPADAKKTHRLDEFDLKNL------PLKKQRELKRKAT-AAQQTF 412
Query: 416 AWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVN 475
+WNSLFM D V+ ++A K G+ KS L+D E + AV+ AL E VI + +K GV+
Sbjct: 413 SWNSLFMNQDAVLSSVAAKLGMEKSQLIDPENSGSAVKQALAEAHVIGDVRKYFEARGVD 472
Query: 476 VSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALV 535
++ E+F +R + + LVKN P+ ++ ELA++F FG ++++++P + T+A++
Sbjct: 473 LTQFEKFKKVT----ERDDRIILVKNFPHGTTREELAELFLPFGKIERLLMPPSGTIAII 528
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRAL 595
+ + A AF L+YKR+K LYLE P D S+ +G++ + D K
Sbjct: 529 QYRDVPAARGAFTKLSYKRFKEAILYLEKGPKDCFSRE--PRGDELLEGDAAPEDVKE-- 584
Query: 596 LEQQLEGVTDADIDPDRVESR-------SLFVKNLNFKTCDENLRKHFGEHIKEGRILS- 647
+++ +E V DAD E+ S+FVKNLNF T L + F G +++
Sbjct: 585 IKKSVEDVMDADSKTPSSEATAIDGPTVSIFVKNLNFSTTSAQLAEKFKPF--SGFVVAQ 642
Query: 648 VKVKKHLKNG-KNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV 706
VK K KN K +SMGFGFIEF + E A V + G ++DGH + L++ H +
Sbjct: 643 VKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKT 702
Query: 707 KKAEKDKSSTKLLVRNVAFEAQRK 730
K K K S K++V+N+ FEA RK
Sbjct: 703 SKGSKKKISGKIIVKNLPFEATRK 726
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 303 VRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN 362
V+NLP+ AT ++ E FS FG + V V K K ++G A+V + +P A A++ L
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPSEAENAMDQLQG 774
Query: 363 SIFQGRLLHVMPARHKKSSDKQE 385
GR L VM ++S D +E
Sbjct: 775 VHLLGRRL-VMQYAEQESDDVEE 796
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYK 553
VKNLP++++ ++ ++F FG L V +P S + A V FL P EA A L
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGV 775
Query: 554 RYKGVPLYLEWAPS---DVLSQSSTSKGNQKNDAVVGEHDAKR 593
G L +++A DV Q S K A V + A R
Sbjct: 776 HLLGRRLVMQYAEQESDDVEEQISKMTMKMKKQAAVSKMGALR 818
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 620 VKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVC 679
VKNL F+ +++ + F G++ SV+V K + GF F+EF A N
Sbjct: 716 VKNLPFEATRKDVFELFSSF---GQLKSVRVPKKFDKS---ARGFAFVEFLLPSEAENAM 769
Query: 680 RDLQGTILDGHALILQLCHAKKD---EQVVKKAEKDK 713
LQG L G L++Q + D EQ+ K K K
Sbjct: 770 DQLQGVHLLGRRLVMQYAEQESDDVEEQISKMTMKMK 806
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS 64
VKNLP T + + FS G++ ++ + D +R FAF+ F EAE A+
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGV 775
Query: 65 YLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVS 100
+L R+ + A + D ++ S+ ++K +K+ +
Sbjct: 776 HLLGRRLVMQYAEQESD-DVEEQISKMTMKMKKQAA 810
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 163/449 (36%), Positives = 246/449 (54%), Gaps = 48/449 (10%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S RLFVRNLPY A+E +L FSKFG + E+H+ D + SKG AYV Y P++A +A
Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359
Query: 358 EVLDNSIFQGRLLHVMPARHKKSS--DKQELHNSTSQGTKTLKQRREEERKASEASGNTK 415
+ LD FQGRL+H++PA KK+ D+ EL LK++++ +RK EAS +T
Sbjct: 360 KELDGKHFQGRLMHILPATAKKTYKIDEHELSKL------PLKKQKQIKRKL-EASSSTF 412
Query: 416 AWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVN 475
+WNSL+M D V+ ++A + GVSK+DLLD + D AV+ A ET VI ETK T GVN
Sbjct: 413 SWNSLYMNTDAVMSSVAERLGVSKADLLDPTSADAAVKQAHAETHVIQETKAYFTANGVN 472
Query: 476 VSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALV 535
+ + ++ +R N LVKN Y +L K+F +G + ++++P + T+A+V
Sbjct: 473 LDAFKQ--------RERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIV 524
Query: 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRAL 595
F P EA AFKGLAY++ L+LE AP+++ ++ + + V
Sbjct: 525 EFARPDEAQKAFKGLAYRKVGDSILFLEKAPANLFDATTAPQTSVLETKAVS-------- 576
Query: 596 LEQQLEGVTDADI----DPDR-VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS-VK 649
+G + AD D D V + +LFVKNLNF T +E + F +G + + +K
Sbjct: 577 -----QGFSTADTFAAEDGDEPVVTSTLFVKNLNFSTTNERFTEVFKPL--DGFVSARIK 629
Query: 650 VKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD------ 702
K K GK +SMGFGF++F + A + G LD H L+++ + D
Sbjct: 630 TKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERR 689
Query: 703 -EQVVKKAEKDKSSTKLLVRNVAFEAQRK 730
E KK + TK++++N+ F+A +K
Sbjct: 690 REDTAKKIAARR--TKIIIKNLPFQATKK 716
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
+ +KNL F+ +++R FG + G++ SV+V K + GFGF +F S A N
Sbjct: 704 IIIKNLPFQATKKDVRSLFGAY---GQLRSVRVPKKFDRS---ARGFGFADFVSAREAEN 757
Query: 678 VCRDLQGTILDGHALILQLCH--AKKDEQVVKKAEK 711
L+ T L G L+L+ + A EQ +++ EK
Sbjct: 758 AMDALKNTHLLGRRLVLEFANEEAVDPEQEIEQIEK 793
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 94/428 (21%), Positives = 172/428 (40%), Gaps = 61/428 (14%)
Query: 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASR 355
+E+ R+FV LP T T D+LR HFS +++ H++ + I +V + E+A +
Sbjct: 1 MENTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVLP------KRRIGFVGFKSSEAAQQ 54
Query: 356 AIEVLDNSIFQGRLLHV--------MPARHKKSSDKQELHNSTSQGTKTLKQRREEERKA 407
A + + + + V P + + K N ++ G K LK++R+ +
Sbjct: 55 AASYFNKTYVKMSKISVEIAKPIDSEPVKKAEKHRKGSTSNDSTAG-KALKRKRDGDN-- 111
Query: 408 SEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKK 467
++ + + S+ RP K + D L+ N A T + E ++
Sbjct: 112 TQKDPQLQEYLSVIERPSKT------KTWANGDDFLNTIQNQPA-------TSELREEQR 158
Query: 468 ALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP 527
T+ V S ++ + D + ++ H + + D +E E + G ++ + P
Sbjct: 159 DDTSEKVEEHSHKQRKKPRVDDVPKAAHDREPEPMVLDKTEEEHERANAD-GQVEAI--P 215
Query: 528 STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQ----------SSTSK 577
T+ A EPV A + R G+ E A D +Q + +
Sbjct: 216 PTQEEA-----EPVSDADWLRS-KTSRLLGLLDEDEQAEFDSTAQRKPDPSSEPETVSKA 269
Query: 578 GNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFG 637
G Q +D D K A+ E D +I+ R+ SR LFV+NL + + +L F
Sbjct: 270 GAQHSD------DDKAAVESSVEEEEVDTNIEHIRLSSR-LFVRNLPYDASESDLEPVFS 322
Query: 638 EHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697
K G+I + V S GF ++++ + A ++L G G + +
Sbjct: 323 ---KFGKIEEIHVA--FDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILPA 377
Query: 698 HAKKDEQV 705
AKK ++
Sbjct: 378 TAKKTYKI 385
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
++I +KNLP T+ +R F G++ ++ + D +R F F F + +EAE A+
Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 761
Query: 61 FNKSYLDTCRISCEIA 76
++L R+ E A
Sbjct: 762 LKNTHLLGRRLVLEFA 777
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
++ ++NLP+ AT+ ++R F +G + V V K + ++G + + A A++
Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVR-VPKKFDRSARGFGFADFVSAREAENAMDA 761
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQEL 386
L N+ GR L + A + +QE+
Sbjct: 762 LKNTHLLGRRLVLEFANEEAVDPEQEI 788
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 498 LVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAY 552
++KNLP+ +++ ++ +FG +G L V +P S + F+ EA A L
Sbjct: 705 IIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKN 764
Query: 553 KRYKGVPLYLEWA 565
G L LE+A
Sbjct: 765 THLLGRRLVLEFA 777
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 245/467 (52%), Gaps = 32/467 (6%)
Query: 280 DPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
+P P S+ + Q +L + RLFVRNL + T + L HFS +G + E H+ V + T
Sbjct: 204 EPSTPQLSADE--QLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEP 261
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399
G A++ + E A A + LD +IFQGRLLHV+P R K + + G K L +
Sbjct: 262 LGTAFLQFHNAEDALAAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVDG-KVLGK 320
Query: 400 RRE----------EERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND 449
R E +RK A G W SL+M D V ++A + G+SKS+LL+ ++ +
Sbjct: 321 RDEGRGEVKSKVDAKRKQESAKGVN--WASLYMNSDAVAASVADRMGISKSELLNADSGN 378
Query: 450 LAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEG 509
AV++AL ET VI ETKK AG+ + SL+ + RS LVKN+PY +S
Sbjct: 379 SAVKLALAETTVIEETKKYFEEAGIVLESLQ-------PRVPRSQTTILVKNIPYGTSIQ 431
Query: 510 ELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569
L +F G L +V+LP TL +V F ++A AFK LAY+R LYLE P +
Sbjct: 432 SLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMDAGRAFKALAYRRLGNAVLYLEKGPVGM 491
Query: 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCD 629
+S T+ G + +AL E ++E + + DP +LF+K LNF T
Sbjct: 492 F-KSETAPGVGPISTEQKREEEAKALAE-KVESLPEQP-DPTDEAGSTLFLKGLNFTTTT 548
Query: 630 ENLRKHFGEHIKEGRILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688
+L+ HI V++K K G+ +SMG+GF+ F + E AT + L+G +D
Sbjct: 549 PHLQTVL-SHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEID 607
Query: 689 GHALILQLCH-AKKDEQVVKK---AEKDKS-STKLLVRNVAFEAQRK 730
G +L ++ +D++ KK AE K+ STK+LV+N+ FEA +K
Sbjct: 608 GKSLEVKFAQRGAEDDRETKKGGDAEGGKTKSTKVLVKNLPFEATKK 654
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 126/328 (38%), Gaps = 88/328 (26%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+ V+N+PY + L + F+ G ++ V +P + + +
Sbjct: 419 ILVKNIPYGTSIQSLTDLFAPHGKLTRV-------------------LLPPAGTLGVVEF 459
Query: 361 DNSIFQGRLLHVMPARH---------KKSSDKQELHNSTSQGTKTLKQRREEERKA---- 407
+N + GR + R K + + G + +Q+REEE KA
Sbjct: 460 ENHMDAGRAFKALAYRRLGNAVLYLEKGPVGMFKSETAPGVGPISTEQKREEEAKALAEK 519
Query: 408 -----SEASGNTKAWNSLFMRP----------DTVVENIARKHGVSKSDL-LDREANDLA 451
+ +A ++LF++ TV+ +I G S + + + +
Sbjct: 520 VESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIP---GFSFARVQMKPDPKRPG 576
Query: 452 VRIALGETQVIAETKKALTNAGVNVSSLEEF-----------------------SAGKTD 488
++++G V +TK+A T A + +LE F G +
Sbjct: 577 EKLSMGYGFVGFKTKEAATKA---LKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAE 633
Query: 489 GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----------STKTLALVVF 537
G K + LVKNLP+++++ ++ ++F +G L + LP ST+ A + F
Sbjct: 634 GGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEF 693
Query: 538 LEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
EAA A + L + G L L+WA
Sbjct: 694 TTHTEAARAMEALKHTHLLGRHLVLQWA 721
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVH-----IVVDKDTKRSKGIAYVLYAIPE 351
+S ++ V+NLP+ AT+ ++RE FS +G + + + + ++G A++ +
Sbjct: 638 KSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHT 697
Query: 352 SASRAIEVLDNSIFQGRLL 370
A+RA+E L ++ GR L
Sbjct: 698 EAARAMEALKHTHLLGRHL 716
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 606 ADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKH---LKNGKNVSM 662
D + + +S + VKNL F+ +++R+ F + G++ S+++ + G +
Sbjct: 630 GDAEGGKTKSTKVLVKNLPFEATKKDVRELFSAY---GQLKSLRLPRKAVPTSTGAQSTR 686
Query: 663 GFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698
GF F+EF + A L+ T L G L+LQ +
Sbjct: 687 GFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWAN 722
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ NLP + D R + + TK R+FAF+G++ +EA++ ++
Sbjct: 24 SRLIFLNLPSTLNPDTFRKTLLSPATLKSTTITDTKLVPKRRFAFVGYKDAEEAQKVKEW 83
Query: 61 FNKSY 65
F+ +Y
Sbjct: 84 FDGTY 88
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 245/467 (52%), Gaps = 32/467 (6%)
Query: 280 DPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
+P P S+ + Q +L + RLFVRNL + T + L HFS +G + E H+ V + T
Sbjct: 204 EPSTPQLSADE--QLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEP 261
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399
G A++ + E A A + LD +IFQGRLLHV+P R K + + G K L +
Sbjct: 262 LGTAFLQFHNAEDALAAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVDG-KVLGK 320
Query: 400 RRE----------EERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND 449
R E +RK A G W SL+M D V ++A + G+SKS+LL+ ++ +
Sbjct: 321 RDEGRGEVKSKVDAKRKQESAKGVN--WASLYMNSDAVAASVADRMGISKSELLNADSGN 378
Query: 450 LAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEG 509
AV++AL ET VI ETKK AG+ + SL+ + RS LVKN+PY +S
Sbjct: 379 SAVKLALAETTVIEETKKYFEEAGIVLESLQ-------PRVPRSQTTILVKNIPYGTSIQ 431
Query: 510 ELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569
L +F G L +V+LP TL +V F ++A AFK LAY+R LYLE P +
Sbjct: 432 SLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMDAGRAFKALAYRRLGNAVLYLEKGPVGM 491
Query: 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCD 629
+S T+ G + +AL E ++E + + DP +LF+K LNF T
Sbjct: 492 F-KSETAPGVGPISTEQKREEEAKALAE-KVESLPEQP-DPTDEAGSTLFLKGLNFTTTT 548
Query: 630 ENLRKHFGEHIKEGRILSVKVKKHLKN-GKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688
+L+ HI V++K K G+ +SMG+GF+ F + E AT + L+G +D
Sbjct: 549 PHLQTVL-SHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEID 607
Query: 689 GHALILQLCH-AKKDEQVVKK---AEKDKS-STKLLVRNVAFEAQRK 730
G +L ++ +D++ KK AE K+ STK+LV+N+ FEA +K
Sbjct: 608 GKSLEVKFAQRGAEDDRETKKGGDAEGGKTKSTKVLVKNLPFEATKK 654
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 126/328 (38%), Gaps = 88/328 (26%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
+ V+N+PY + L + F+ G ++ V +P + + +
Sbjct: 419 ILVKNIPYGTSIQSLTDLFAPHGKLTRV-------------------LLPPAGTLGVVEF 459
Query: 361 DNSIFQGRLLHVMPARH---------KKSSDKQELHNSTSQGTKTLKQRREEERKA---- 407
+N + GR + R K + + G + +Q+REEE KA
Sbjct: 460 ENHMDAGRAFKALAYRRLGNAVLYLEKGPVGMFKSETAPGVGPISTEQKREEEAKALAEK 519
Query: 408 -----SEASGNTKAWNSLFMRP----------DTVVENIARKHGVSKSDL-LDREANDLA 451
+ +A ++LF++ TV+ +I G S + + + +
Sbjct: 520 VESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIP---GFSFARVQMKPDPKRPG 576
Query: 452 VRIALGETQVIAETKKALTNAGVNVSSLEEF-----------------------SAGKTD 488
++++G V +TK+A T A + +LE F G +
Sbjct: 577 EKLSMGYGFVGFKTKEAATKA---LKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAE 633
Query: 489 GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----------STKTLALVVF 537
G K + LVKNLP+++++ ++ ++F +G L + LP ST+ A + F
Sbjct: 634 GGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEF 693
Query: 538 LEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
EAA A + L + G L L+WA
Sbjct: 694 TTHTEAARAMEALKHTHLLGRHLVLQWA 721
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVH-----IVVDKDTKRSKGIAYVLYAIPE 351
+S ++ V+NLP+ AT+ ++RE FS +G + + + + ++G A++ +
Sbjct: 638 KSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHT 697
Query: 352 SASRAIEVLDNSIFQGRLL 370
A+RA+E L ++ GR L
Sbjct: 698 EAARAMEALKHTHLLGRHL 716
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 606 ADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKH---LKNGKNVSM 662
D + + +S + VKNL F+ +++R+ F + G++ S+++ + G +
Sbjct: 630 GDAEGGKTKSTKVLVKNLPFEATKKDVRELFSAY---GQLKSLRLPRKAVPTSTGAQSTR 686
Query: 663 GFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698
GF F+EF + A L+ T L G L+LQ +
Sbjct: 687 GFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWAN 722
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
SR+ NLP + D R + + TK R+FAF+G++ +EA++ ++
Sbjct: 24 SRLIFLNLPSTLNPDTFRKTLLSPATLKSTTITDTKLVPKRRFAFVGYKDAEEAQKVKEW 83
Query: 61 FNKSY 65
F+ +Y
Sbjct: 84 FDGTY 88
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 175/421 (41%), Gaps = 75/421 (17%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V +L + +E L + FS G VS + + D TK S G AYV + ++A AI
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 358 EVLDNSIFQGRLLHVM-----PARHKKSSDK---QELH----NSTSQGTKTLKQRREEER 405
E L+ + +G+L +M P+ KK + + LH N T ++ +
Sbjct: 94 EKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSK 153
Query: 406 KASEASGNTKAWNSL-FMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAE 464
A++ +G +K + + F ++ E I +G+ LL+ + + ++ E +
Sbjct: 154 VATDETGKSKGFGYVHFEEDESASEAIDALNGM----LLNGQEIYVGPHLSKKERE---- 205
Query: 465 TKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKV 524
S EE A T+ +KN+ ++++ E ++ KFG D V
Sbjct: 206 ------------SKFEEMKANFTN--------VYIKNINTETTDKEFEELVAKFGKTDSV 245
Query: 525 ILPST-----KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN 579
+L T K V F+ +A + L +KG PLY+ A Q K
Sbjct: 246 VLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKK-- 303
Query: 580 QKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH 639
+++A R + +G+ +LF+KNL+ D+ L + F +
Sbjct: 304 --------QYEATRMEKMAKYQGI-------------NLFIKNLDDSIDDKKLEEEFAPY 342
Query: 640 IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699
G I S KV +NGK S GFGF+ F + E AT + I+ G L + +
Sbjct: 343 ---GTITSAKVMT-TENGK--SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 396
Query: 700 K 700
K
Sbjct: 397 K 397
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + + +L + F+ G IT AK+M T++GKS+ F F+ F T +EA +AI N
Sbjct: 321 LFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKN 380
Query: 63 KSYLDTCRISCEIARK 78
+ + + IA++
Sbjct: 381 QQIVAGKPLYVAIAQR 396
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV + GK S GFG++ F+ E+A+
Sbjct: 124 NIFIKNLHPDIDNKALYDTFSVF---GNILSSKVATD-ETGK--SKGFGYVHFEEDESAS 177
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
L G +L+G + + H K E+ K E + T + ++N+
Sbjct: 178 EAIDALNGMLLNGQEIYVG-PHLSKKERESKFEEMKANFTNVYIKNI 223
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G I +K+ + GKS+ F ++ F ++ A EAI N
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALN 184
Query: 63 KSYLDTCRI 71
L+ I
Sbjct: 185 GMLLNGQEI 193
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHI-KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETA 675
++++KN+N +T D K F E + K G+ SV V + G+N GFGF+ F + E A
Sbjct: 217 NVYIKNINTETTD----KEFEELVAKFGKTDSV-VLERTPEGEN--KGFGFVNFVNHEDA 269
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQ 704
+L T G L + K + Q
Sbjct: 270 VKCVEELNNTEFKGQPLYVNRAQKKYERQ 298
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/426 (25%), Positives = 178/426 (41%), Gaps = 85/426 (19%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V +L + +E L + FS G+VS + + D TK S G AYV + E+ +AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 358 EVLDNSIFQGRLLHVM-----PARHKKSS------------DKQELHNSTSQGTKTLKQR 400
E L+ + +GRL +M P+ KK S D + L+++ S L
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILS-- 154
Query: 401 REEERKASEASGNTKAWNSL-FMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459
+ A++ +G +K + + F E I +G+ LL+ + +A ++ E
Sbjct: 155 ---SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGM----LLNGQEIYVAPHLSRKER 207
Query: 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
S LEE A T+ VKN+ ++++ + ++F KFG
Sbjct: 208 D----------------SQLEETKAHYTN--------LYVKNINSETTDEQFQELFAKFG 243
Query: 520 -----SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSS 574
SL+K K V + + +A A + L G LY+ A
Sbjct: 244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA--------- 294
Query: 575 TSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRK 634
K N++ + +++A R + +GV +LFVKNL+ DE L +
Sbjct: 295 -QKKNERMHVLKKQYEAYRLEKMAKYQGV-------------NLFVKNLDDSVDDEKLEE 340
Query: 635 HFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694
F + G I S KV + +NGK S GFGF+ F + E AT + I+ G L +
Sbjct: 341 EFAPY---GTITSAKVMR-TENGK--SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 695 QLCHAK 700
+ K
Sbjct: 395 AIAQRK 400
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ VKNL V +++L + F+ G IT AK+MRT++GKS+ F F+ F T +EA +AI N
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 63 KSYLDTCRISCEIARK 78
+ + + IA++
Sbjct: 384 QQIVAGKPLYVAIAQR 399
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G+I +K+ ++GKS+ F F+ F E A+EAI N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 63 KSYLDT--CRISCEIARKVGDPNMPRPWSRYS---LKKEKEVSEDEKNPVLAAKRG 113
L+ ++ ++RK D + + Y+ +K + DE+ L AK G
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG 243
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN+ T+++ ++ F++ G I A L + DGK + F F+ + ++A +A++
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 61 FNKSYLDTCRISCEIARK 78
N S L+ ++ A+K
Sbjct: 279 LNDSELNGEKLYVGRAQK 296
Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 605 DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF 664
D+ ++ + +L+VKN+N +T DE ++ F K G I+S ++K +GK GF
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFA---KFGPIVSASLEKD-ADGK--LKGF 261
Query: 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE-QVVKK 708
GF+ ++ E A L + L+G L + K + V+KK
Sbjct: 262 GFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKK 306
Score = 39.7 bits (91), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 588 EHDAKRALLEQ--------QLEGVTDADIDPD--RVESRSLFVKNLNFKTCDENLRKHFG 637
+H+A R +EQ +L + + DP + S ++F+KNL+ ++ L F
Sbjct: 88 DHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFS 147
Query: 638 EHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697
G ILS K+ +NGK S GFGF+ F+ A L G +L+G + +
Sbjct: 148 VF---GDILSSKIATD-ENGK--SKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV-AP 200
Query: 698 HAKKDEQVVKKAEKDKSSTKLLVRNV 723
H + E+ + E T L V+N+
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNI 226
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 103/423 (24%), Positives = 178/423 (42%), Gaps = 85/423 (20%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V L TE L + FS G +S + + D TK S G AYV Y E+ +AI+ L
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 361 DNSIFQGRLLHVM-----PARHKKSS------------DKQELHNSTSQGTKTLKQRREE 403
+ + GR +M PA KK S D + LH + S + L +
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKV-- 169
Query: 404 ERKASEASGNTKAWNSLFMRPDTVVEN-IARKHGVSKSDLLDREANDLAVRIALGETQVI 462
A + +GN++ + + + ++ ++ I +G+ N L V +A+ V
Sbjct: 170 ---ALDENGNSRGFGFVHFKEESDAKDAIEAVNGML--------MNGLEVYVAM---HVP 215
Query: 463 AETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG--- 519
+ + +S LEE A T+ VKN+ ++++ E ++F ++G
Sbjct: 216 KKDR---------ISKLEEAKANFTN--------IYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 520 --SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSK 577
+L+K K V F++ AA A + L K +K LY+ A K
Sbjct: 259 SAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA----------QK 308
Query: 578 GNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFG 637
++ + + +++ R + +GV +LF+KNL+ DE L++ F
Sbjct: 309 KYERAEELKKQYEQYRLEKLAKFQGV-------------NLFIKNLDDSIDDEKLKEEFA 355
Query: 638 EHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697
+ G I S +V +++ + S GFGF+ F S E AT + I+ G L + +
Sbjct: 356 PY---GTITSARV---MRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 698 HAK 700
K
Sbjct: 410 QRK 412
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + +++L++ F+ G IT A++MR ++G S+ F F+ F + +EA +A+ N
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
Query: 63 KSYLDTCRISCEIARK 78
+ + + IA++
Sbjct: 396 QQIVAGKPLYVAIAQR 411
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S ++F+KNL+ ++ L + F G +LS KV +NG S GFGF+ F
Sbjct: 137 SGNIFIKNLHPAIDNKALHETFSTF---GEVLSCKVALD-ENGN--SRGFGFVHFKEESD 190
Query: 675 ATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFE 726
A + + G +++G + + + H K +++ K E + T + V+N+ E
Sbjct: 191 AKDAIEAVNGMLMNGLEVYVAM-HVPKKDRISKLEEAKANFTNIYVKNIDVE 241
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L + FS GE+ K+ ++G SR F F+ F+ E +A++AI+ N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 63 KSYLDTCRI 71
++ +
Sbjct: 200 GMLMNGLEV 208
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKN+ T++ FSQ GEI A L + +GK + F F+ F A +A++
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 61 FN 62
N
Sbjct: 291 LN 292
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 29/285 (10%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
SG +F++NL L E FS FG V + +D++ S+G +V + A AI
Sbjct: 137 SGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENG-NSRGFGFVHFKEESDAKDAI 195
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDK-QELHNSTSQGTKTLKQRREEERKASEASGNTKA 416
E ++ + G L V A H D+ +L + + T + + E E
Sbjct: 196 EAVNGMLMNG--LEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEE------- 246
Query: 417 WNSLFMRPDTVVENIARK------HGVSKSDLLDREANDLAVRIALG-----ETQVIAET 465
+ LF + +V K G + +D A AV G + +
Sbjct: 247 FEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306
Query: 466 KKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVI 525
+K A E++ K + N +KNL + +L + F +G++
Sbjct: 307 QKKYERAEELKKQYEQYRLEKLAKFQGVN--LFIKNLDDSIDDEKLKEEFAPYGTITSAR 364
Query: 526 L-----PSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565
+ ++K V F P EA A + G PLY+ A
Sbjct: 365 VMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 180/439 (41%), Gaps = 83/439 (18%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIA 343
P+++ + + L+V L T +E L + FS G+VS + + D T S G A
Sbjct: 23 PTTTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYA 82
Query: 344 YVLYAIPESASRAIEVLDNSIFQGRLLHVM-----PARHKKSS------------DKQEL 386
YV + E+ +AIE L+ ++ +G+ +M P+ KK S D + L
Sbjct: 83 YVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSL 142
Query: 387 HNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDRE 446
H + S L + A++ +G ++ + + E+ AR + +L
Sbjct: 143 HETFSTFGNILSCKV-----ATDENGVSRGFGFVHFE----NESDARDAIEAVDGML--- 190
Query: 447 ANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDS 506
ND V +AL ++ ++K LEE A T+ VKN+ ++
Sbjct: 191 MNDQEVYVALHVSKKDRQSK------------LEEVKAKFTN--------VYVKNIDQET 230
Query: 507 SEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561
S+ E ++FGK+G + +L + V F + AA A L +KG LY
Sbjct: 231 SQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLY 290
Query: 562 LEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVK 621
+ A K ++ + +++A R + +GV +LFVK
Sbjct: 291 VGRA----------QKKYERLQELKKQYEAARLEKLAKYQGV-------------NLFVK 327
Query: 622 NLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681
NL+ DE L++ F G I S KV +++ S GFGF+ F + E AT +
Sbjct: 328 NLDDSIDDEKLKEEFAPF---GTITSAKV---MRDETGNSRGFGFVCFSTPEEATKAITE 381
Query: 682 LQGTILDGHALILQLCHAK 700
I+ G L + + K
Sbjct: 382 KNQQIVAGKPLYVAIAQRK 400
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ VKNL + +++L++ F+ G IT AK+MR + G SR F F+ F T +EA +AI N
Sbjct: 324 LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKN 383
Query: 63 KSYLDTCRISCEIARK 78
+ + + IA++
Sbjct: 384 QQIVAGKPLYVAIAQR 399
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVET 674
S ++++KNL+ +++L + F G ILS KV +NG VS GFGF+ F++
Sbjct: 125 SGNIYIKNLHPAIDNKSLHETFSTF---GNILSCKVATD-ENG--VSRGFGFVHFENESD 178
Query: 675 ATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSS-TKLLVRNV 723
A + + G +++ + + L +KKD Q K E+ K+ T + V+N+
Sbjct: 179 ARDAIEAVDGMLMNDQEVYVALHVSKKDRQ--SKLEEVKAKFTNVYVKNI 226
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN+ + +++ + F + G+IT A L + +GK R F F+ F A +A+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 61 FN 62
N
Sbjct: 279 LN 280
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAI 58
I +KNL + L + FS G I K+ ++G SR F F+ F E +A +AI
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAI 183
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESAS 354
+ S +LF+ + Y+ ED LRE F+K+G V + +++D++T RS+G +V + E+AS
Sbjct: 36 CMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAAS 95
Query: 355 RAIEVLDNSIFQGRLLHVMPARHK 378
AI+ LD GR++ V A +
Sbjct: 96 SAIQALDGRDLHGRVVKVNYANDR 119
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S++ + + + ED LR+ F++ GE+ D +++ ++ G+SR F F+ F + + A AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ S LF+ + + +++LR+ F K G ++ +V + G+ S GFGF+ F S
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAF---TKYGEVVDTRVILDRETGR--SRGFGFVTFTSS 91
Query: 673 ETATNVCRDLQGTILDGHALILQLCHA 699
E A++ + L G L H ++++ +A
Sbjct: 92 EAASSAIQALDGRDL--HGRVVKVNYA 116
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 109/449 (24%), Positives = 186/449 (41%), Gaps = 84/449 (18%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + E L E FS G V+ + + D +K+S G AYV Y E +AI
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 358 EVLDNSIFQGRLLHVMPARHKKSS-----------------DKQELHNSTSQGTKTLKQR 400
E L+ + +GR +M ++ S+ D + LH++ S K L
Sbjct: 126 EELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSV- 184
Query: 401 REEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
+ A++ G +K + F+ +T A V+ L DRE + +G+
Sbjct: 185 ----KVATDDLGQSKCFG--FVHYETEEAAQAAIESVNGMLLNDRE-------VYVGK-H 230
Query: 461 VIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS 520
V + ++ S LEE A T+ VKN+ +E E ++F FG
Sbjct: 231 VSKKDRE---------SKLEEMKANYTN--------IYVKNIDLAYTEKEFEELFAPFGK 273
Query: 521 LDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST 575
+ + L +K V F E AA A + L K G +Y+ A
Sbjct: 274 ITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRA---------- 323
Query: 576 SKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKH 635
K ++ + + +++A R + +GV +LFVKNL+ + E L +
Sbjct: 324 QKKRERTEELKKQYEAVRLEKLSKYQGV-------------NLFVKNLDEQIDSEKLEEE 370
Query: 636 FGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695
F G I S KV + + S GFGF+ F + E AT ++ +++G L +
Sbjct: 371 FKPF---GTITSSKV---MVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVA 424
Query: 696 LCHAKKDEQVVKKAEKDKSSTKLLVRNVA 724
L +KD + + ++ ++ ++ ++N A
Sbjct: 425 LAQ-RKDVRRSQLEQQIQARNQMRMQNAA 452
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ VKNL + + ++L + F G IT +K+M GKS+ F F+ F T +EA +AI N
Sbjct: 353 LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMN 412
Query: 63 KSYLDTCRISCEIARK 78
+ ++ + +A++
Sbjct: 413 QRMVNGKPLYVALAQR 428
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKN+ TE + F+ G+IT L + +GKS+ F F+ F + A +A++
Sbjct: 248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEE 307
Query: 61 FNKSYLDTCRISCEIARK 78
N ++ +I A+K
Sbjct: 308 LNDKEINGQKIYVGRAQK 325
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G+I K+ G+S+ F F+ + TE+ A+ AI+ N
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVN 216
Query: 63 KSYLD 67
L+
Sbjct: 217 GMLLN 221
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/427 (24%), Positives = 176/427 (41%), Gaps = 85/427 (19%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + TE L E F+ G V+ + + D T+RS G AYV + E +A+
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 358 EVLDNSIFQGRLLHVM-----PARHKKSS------------DKQELHNSTSQGTKTLKQR 400
+ L+ ++ +GR +M P+ K + D + LH++ S K L
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC- 197
Query: 401 REEERKASEASGNTKAWNSLFMRPDTV-VENIARKHGVSKSDLLDREANDLAVRIALGET 459
+ A + GN K + F+ D+V N A +H LL ND V +
Sbjct: 198 ----KVAVDELGNAKGYG--FVHFDSVESANAAIEH--VNGMLL----NDKKVYV----- 240
Query: 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG 519
G +VS E S K + LK + +KNL + +E E + +FG+FG
Sbjct: 241 -------------GHHVSRRERQS--KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Query: 520 SLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSS 574
+ + L + V + A A L K YKG LY+
Sbjct: 286 EITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV------------ 333
Query: 575 TSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRK 634
+ +K++ E + ++ + +LE + ++ + +LF+KNL + DE L+
Sbjct: 334 -GRAQKKHER---EEELRKRYEQMKLEKM-------NKYQGVNLFIKNLQDEVDDERLKA 382
Query: 635 HFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694
F G I S K+ + + + S GFGF+ + + E A ++ +L G L +
Sbjct: 383 EFSAF---GTITSAKI---MTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 695 QLCHAKK 701
L K+
Sbjct: 437 ALAQRKE 443
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL V ++RL+ FS G IT AK+M + GKS+ F F+ + T +EA +A+ N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 63 KSYLDTCRISCEIARK 78
+ L + +A++
Sbjct: 426 QRMLAGKPLYVALAQR 441
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KNL +TE D F Q GEIT L++ ++ K R F F+ + + A++A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 61 FN 62
N
Sbjct: 321 LN 322
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L D FS G+I K+ + G ++ + F+ F + + A AI++ N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 63 KSYLD 67
L+
Sbjct: 230 GMLLN 234
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 150/378 (39%), Gaps = 81/378 (21%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + TE L E FS G V+ + + D T+RS G AYV Y RA+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 358 EVLDNSIFQGRLLHVM-----PARHKKSS------------DKQELHNSTSQGTKTLKQR 400
E L+ ++ +GR +M PA K D + LH++ + L
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC- 172
Query: 401 REEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
+ A + GN+K + + +N A KH LL+ + + IA + Q
Sbjct: 173 ----KVAQDEFGNSKGYGFVHYETAEAAQN-AIKH--VNGMLLNDKKVFVGHHIAKKDRQ 225
Query: 461 VIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS 520
S EE A T+ VKN+ D++E E +F KFG
Sbjct: 226 ----------------SKFEEMKANFTN--------VYVKNIDQDTTEEEFRDLFEKFGE 261
Query: 521 LDKVILP------STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSS 574
+ L ++ V F AAAA + L K +KG LY+ A
Sbjct: 262 ITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA--------- 312
Query: 575 TSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRK 634
K +++ + + +++A R + +GV +L++KNL+ DE LR+
Sbjct: 313 -QKKHEREEELRKQYEAARIEKASKYQGV-------------NLYIKNLSDDIDDEKLRE 358
Query: 635 HFGEHIKEGRILSVKVKK 652
F + G I S KV +
Sbjct: 359 LFSSY---GTITSAKVMR 373
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR-TKDGKSRQFAFIGFRTEQEAEEAIK 59
+ + VKN+ + TE+ RD F + GEIT A L R + GKSR F F+ F + A A++
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 60 YFN 62
N
Sbjct: 296 ALN 298
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK-HLKNGKNVSMGFGFIEFDSVETA 675
++F+KNL+ ++ L F G ILS KV + N K G+GF+ +++ E A
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAF---GNILSCKVAQDEFGNSK----GYGFVHYETAEAA 196
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
N + + G +L+ + + AKKD Q K E + T + V+N+
Sbjct: 197 QNAIKHVNGMLLNDKKVFVGHHIAKKDRQ-SKFEEMKANFTNVYVKNI 243
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKN++ T +E R F K G I S + + ++GK S GFGF+ F S + A
Sbjct: 237 NVYVKNIDQDTTEEEFRDLF---EKFGEITSATLARDAESGK--SRGFGFVNFTSHDNAA 291
Query: 677 NVCRDLQGTILDGHALILQLCHAK--KDEQVVKKAE 710
L G L + K ++E++ K+ E
Sbjct: 292 AAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYE 327
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR 34
+ +KNL + +++LR+ FS G IT AK+MR
Sbjct: 342 LYIKNLSDDIDDEKLRELFSSYGTITSAKVMR 373
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 111/452 (24%), Positives = 180/452 (39%), Gaps = 90/452 (19%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + E L E FS G VS + + D +K+S G AYV Y E +AI
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 358 EVLDNSIFQGRLLHVMPARHKKSS-----------------DKQELHNSTSQGTKTLKQR 400
E L+ + +GR +M ++ S+ D + LH++ S K L
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC- 169
Query: 401 REEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
+ A++ G +K + F+ +T A V+ L DRE + +G+
Sbjct: 170 ----KVATDEFGQSKCFG--FVHYETAEAAEAAIENVNGMLLNDRE-------VFVGKH- 215
Query: 461 VIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS 520
I++ + S EE A T+ VKN+ + SE K+F FG
Sbjct: 216 -ISKKDRE--------SKFEEMKANFTN--------IYVKNIDLNYSEESFEKLFSPFGK 258
Query: 521 LDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST 575
+ + L +K V F + A A + L K G +Y
Sbjct: 259 ITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIY-------------- 304
Query: 576 SKGNQKNDAVVGEHDAKRALLEQ---QLEGVTDADIDPDRVESRSLFVKNLNFKTCDENL 632
VG KR LE+ Q E V + + + +LFVKNL+ E L
Sbjct: 305 ----------VGRAQKKRERLEELKKQYEAVRLEKL--AKYQGVNLFVKNLDDTIDSEKL 352
Query: 633 RKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692
+ F G I S KV + + S GFGF+ F + E AT ++ +++G L
Sbjct: 353 EEEFKPF---GTITSAKV---MVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPL 406
Query: 693 ILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVA 724
+ L +KD + + ++ ++ ++ ++N A
Sbjct: 407 YVALAQ-RKDVRRSQLEQQIQARNQMRMQNAA 437
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ VKNL + ++L + F G IT AK+M + GKS+ F F+ F T +EA +AI N
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN 397
Query: 63 KSYLDTCRISCEIARK 78
++ + +A++
Sbjct: 398 TRMINGKPLYVALAQR 413
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKN+ +E+ FS G+IT L + +DGKS+ F F+ F + A +A++
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 61 FNKSYLDTCRISCEIARK 78
N ++ +I A+K
Sbjct: 293 LNDKEINGQKIYVGRAQK 310
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
LFV LNF T ++ L HF ++ VK ++ + S GFGFI F + E A++
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASD 62
Query: 678 VCRDLQGTILDGHALILQLCHAKK 701
R + G LDG +++ HA K
Sbjct: 63 AMRAMNGESLDGRQ--IRVDHAGK 84
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIKY 60
++ V L E L D FS G I++ +++ ++ +SR F FI F + A +A++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 61 FNKSYLDTCRISCEIARK 78
N LD +I + A K
Sbjct: 67 MNGESLDGRQIRVDHAGK 84
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 173/440 (39%), Gaps = 87/440 (19%)
Query: 285 SSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAY 344
SS K +++ ++ L+V L + TE L E F+ G V+ V + D T+RS G AY
Sbjct: 32 SSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAY 91
Query: 345 VLYAIPESASRAIEVLDNSIFQGRLLHVM-----PARHKKSS------------DKQELH 387
V + RA+E L+ S + R +M PA K + D + LH
Sbjct: 92 VNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALH 151
Query: 388 NSTSQGTKTLKQRREEERKASEASGNTKAWNSL-FMRPDTVVENIARKHGVSKSDLLDRE 446
++ S + L + A++ GN++ + + + ++ I +G+ LL+ +
Sbjct: 152 DTFSAFGQILSCK-----IATDEFGNSRGFGFVHYESAESAESAIQHVNGM----LLNDK 202
Query: 447 ANDLAVRIALGE-TQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYD 505
+ + + Q E K + TN +KNL +
Sbjct: 203 KVFVGPHVPKSDRMQSFEEQKNSFTNV-------------------------FIKNLGTE 237
Query: 506 SSEGELAKMFGKFGSLDKVILPST-----KTLALVVFLEPVEAAAAFKGLAYKRYKGVPL 560
+E E ++ KFG V L + V + E A A GL+ +KG L
Sbjct: 238 ITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKL 297
Query: 561 YLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFV 620
+ A K ++ D + +++A R + +GV +L++
Sbjct: 298 FAGRA----------KKKYERADELRKQYEASRLEKLNKYQGV-------------NLYI 334
Query: 621 KNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCR 680
KNL+ D+ LR F H G I S KV + + S GFGF+ + S E AT
Sbjct: 335 KNLDDTIDDDKLRAEFAPH---GTITSAKV---MVDEAGKSKGFGFVCYSSPEEATKAVT 388
Query: 681 DLQGTILDGHALILQLCHAK 700
++ ++ G L + L K
Sbjct: 389 EMNHRLVAGKPLYVVLAQRK 408
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+++NL T +D+LR F+ G ++ ++VD + +SKG +V Y+ PE A++A+ +
Sbjct: 332 LYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVTEM 390
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAW--- 417
++ + G+ L+V+ A+ K Q ++ L+Q+ + GN +
Sbjct: 391 NHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQYMGNPGVFYPG 450
Query: 418 NSLFMRP 424
FM P
Sbjct: 451 QPGFMPP 457
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + +D+LR F+ G IT AK+M + GKS+ F F+ + + +EA +A+ N
Sbjct: 332 LYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMN 391
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
I +KNL + L D FS G+I K+ + G SR F F+ + + + AE AI++ N
Sbjct: 136 IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVN 195
Query: 63 KSYLDTCRI 71
L+ ++
Sbjct: 196 GMLLNDKKV 204
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK-HLKNGKNVSMGFGFIEFDSVETA 675
++++KNL+ ++ L F G+ILS K+ N S GFGF+ ++S E+A
Sbjct: 135 NIYIKNLDPAIDNKALHDTFSAF---GQILSCKIATDEFGN----SRGFGFVHYESAESA 187
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFE 726
+ + + G +L+ + + H K +++ E+ S T + ++N+ E
Sbjct: 188 ESAIQHVNGMLLNDKKVFVG-PHVPKSDRMQSFEEQKNSFTNVFIKNLGTE 237
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 133/328 (40%), Gaps = 64/328 (19%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+G ++++NL L + FS FG + I D + S+G +V Y ESA AI
Sbjct: 133 AGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATD-EFGNSRGFGFVHYESAESAESAI 191
Query: 358 EVLDNSIFQGRLLHVMPARHKKSSDK----QELHNSTSQ------GTKTLKQRREE---- 403
+ ++ + + + V P H SD+ +E NS + GT+ + EE
Sbjct: 192 QHVNGMLLNDKKVFVGP--HVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNK 249
Query: 404 --ERKASEASGNTKAWNSLFMRPDTVVENIARKH--GVSKSDLLDREANDLAVRIALGET 459
E + S N + + F D ++A K G+S+++ + N L A +
Sbjct: 250 FGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEF---KGNKLFAGRAKKKY 306
Query: 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFL-VKNLPYDSSEGELAKMFGKF 518
+ E +K ++ A + + L + V L +KNL + +L F
Sbjct: 307 ERADELRK-------------QYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPH 353
Query: 519 GSLD--KVIL---PSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQS 573
G++ KV++ +K V + P EA A + ++ G PLY+ VL+Q
Sbjct: 354 GTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYV------VLAQ- 406
Query: 574 STSKGNQKNDAVVGEHDAKRALLEQQLE 601
D +R+ L+QQ++
Sbjct: 407 --------------RKDVRRSQLQQQIQ 420
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP4 PE=1 SV=1
Length = 685
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 279 VDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR 338
VD + + SK Q E +FVRN+PY ATE+ L HFSKFG+V V+DK T
Sbjct: 270 VDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGL 329
Query: 339 SKGIAYVLYA-----------IPESASRAI----EVLDNSIFQGRLLHVMP 374
+KG A+V + P + S ++ +V+ +++GR+L + P
Sbjct: 330 AKGTAFVAFKDQYTYNECIKNAPAAGSTSLLIGDDVMPEYVYEGRVLSITP 380
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 284 PSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDT-KRSKGI 342
PSS+ + L+ LFVR++P T+++L + FS F + H VV KDT KRS+G
Sbjct: 11 PSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIK--HAVVVKDTNKRSRGF 68
Query: 343 AYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDK 383
+V +A+ + A+ + F G +L V A+ + S K
Sbjct: 69 GFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKK 109
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ V+++P+ VT+++L DFFS I A +++ + +SR F F+ F E + +EA+
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR 87
Query: 63 KSYLDTCRISCEIARK 78
K+ + + +IA++
Sbjct: 88 KTKFNGHILRVDIAKR 103
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP 527
KR + V+N+PYD++E LA F KFGS+ K LP
Sbjct: 286 KREDFSVFVRNVPYDATEESLAPHFSKFGSV-KYALP 321
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 271 EEDANGEIVDP---GNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSE 327
E A G+++ P G P S + + + E + ++V N+ Y + +EL HFS+ G V
Sbjct: 117 EGTAAGQLLSPETVGCPLSGTPEEKVEA-DHRSVYVGNVDYGGSAEELEAHFSRCGEVHR 175
Query: 328 VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376
V I+ DK + KG AY+ +A S A+E LD S+F+GR++ V+P R
Sbjct: 176 VTILCDKFSGHPKGYAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKR 223
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 182/442 (41%), Gaps = 76/442 (17%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V L + E L E FS G VS + + D +K+S G AYV Y E +AIE L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 361 DNSIFQGRLLHVMPARHKKSS-----------------DKQELHNSTSQGTKTLKQRREE 403
+ S +GR +M ++ S+ D + LH++ S K L
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSC---- 169
Query: 404 ERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIA 463
+ A++ G +K + F+ +T A V+ L DRE + +G+ I+
Sbjct: 170 -KVATDDMGQSKCFG--FVHYETAEAAEAAIENVNGMLLNDRE-------VFVGKH--IS 217
Query: 464 ETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDK 523
+ + S EE A T+ VKN+ + SE +L K+F +G++
Sbjct: 218 KKDRE--------SKFEEIKANFTN--------IYVKNIDLEYSEEDLKKLFTPYGAITS 261
Query: 524 VILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKND 583
+ L +A KG + Y+G E A V + QK
Sbjct: 262 IYLEK-------------DAEGKSKGFGFVNYEG----HEAAVKAVEELNDKEINGQK-- 302
Query: 584 AVVGEHDAKRALLEQQLEGVTDADIDP-DRVESRSLFVKNLNFKTCDENLRKHFGEHIKE 642
VG KR +E+ + + ++ + + +LF+KNL+ E L + F
Sbjct: 303 IYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPF--- 359
Query: 643 GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD 702
G I S +V + GK S GFGF+ F S E AT ++ + G L + L +KD
Sbjct: 360 GTITSARVMVD-ETGK--SKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQ-RKD 415
Query: 703 EQVVKKAEKDKSSTKLLVRNVA 724
+ + ++ ++ ++ ++N A
Sbjct: 416 VRRSQLEQQIQARNQMRMQNAA 437
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + ++L + F G IT A++M + GKS+ F F+ F + +EA +AI N
Sbjct: 338 LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMN 397
Query: 63 K 63
+
Sbjct: 398 Q 398
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKN+ +E+ L+ F+ G IT L + +GKS+ F F+ + + A +A++
Sbjct: 233 TNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEE 292
Query: 61 FNKSYLDTCRISCEIARK 78
N ++ +I A+K
Sbjct: 293 LNDKEINGQKIYVGRAQK 310
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/510 (21%), Positives = 190/510 (37%), Gaps = 144/510 (28%)
Query: 273 DANGEIVDPGNPSSS------SKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVS 326
DANG ++ P++S + QQ S L+V L + TE L E FS G V+
Sbjct: 16 DANGAQINTNVPAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVA 75
Query: 327 EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM-----PARHKKSS 381
+ + D T+RS G AYV Y E +A+E L+ ++ +G+ +M PA K
Sbjct: 76 SIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ 135
Query: 382 ------------DKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVE 429
D + LH++ + L + A + GN+K + F+ +T
Sbjct: 136 GNVFIKNLDHAIDNKALHDTFAAFGNILSCKV-----AQDELGNSKGYG--FVHYETA-- 186
Query: 430 NIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV----NVSSLEEFSAG 485
EA + A++ G ++ KK + +S EE A
Sbjct: 187 ----------------EAANNAIKHVNG---MLLNEKKVFVGHHIPKKERMSKFEEMKAN 227
Query: 486 KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEP 540
T+ VKN+ D ++ + ++F K G + + ++ V ++
Sbjct: 228 FTN--------IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRH 279
Query: 541 VEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQL 600
AA A L +KG LY+ A K +++ + + +++A R + +
Sbjct: 280 EAAAVAVDHLNDIEFKGQKLYVGRA----------QKKHEREEELRKQYEAARLEKQSKY 329
Query: 601 EGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHF------------------------ 636
+GV +L++KNLN DE LR F
Sbjct: 330 QGV-------------NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEK 376
Query: 637 --------------------------GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFD 670
GE K G +++K +K + GK S GFGF+ F
Sbjct: 377 EVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKIL-GK--SKGFGFVCFS 433
Query: 671 SVETATNVCRDLQGTILDGHALILQLCHAK 700
+ + AT ++ +++G L + L K
Sbjct: 434 NPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ I VKN+ VT++ R+ F + G+IT A + R GKSR F F+ + + A A+ +
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDH 288
Query: 61 FN 62
N
Sbjct: 289 LN 290
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK-HLKNGKNVSMGFGFIEFDSVETA 675
++F+KNL+ ++ L F G ILS KV + L N K G+GF+ +++ E A
Sbjct: 137 NVFIKNLDHAIDNKALHDTFAAF---GNILSCKVAQDELGNSK----GYGFVHYETAEAA 189
Query: 676 TNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
N + + G +L+ + + H K E++ K E + T + V+N+
Sbjct: 190 NNAIKHVNGMLLNEKKVFVG-HHIPKKERMSKFEEMKANFTNIYVKNI 236
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V NLP++ T ++L FSK+G V +V I+ DKDT+RSKG+A++L+ +SA +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71
Query: 361 DNSIFQGRLL 370
+N GR++
Sbjct: 72 NNKQLFGRVI 81
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIK 59
S + V NLP +T + L FS+ G++ +M+ KD +S+ AFI F + A+ +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTR 69
Query: 60 YFNKSYL 66
N L
Sbjct: 70 AINNKQL 76
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 487 TDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLE 539
+ GL S V NLP+ + +L ++F K+G + KV + +K +A ++FL+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLD 60
>sp|Q32P59|SLIRP_BOVIN SRA stem-loop-interacting RNA-binding protein, mitochondrial OS=Bos
taurus GN=SLIRP PE=3 SV=1
Length = 111
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 302 FVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361
FVR +P+TA ELREHF++FG+V + + DK+T KG+ ++ ++ E A++ +
Sbjct: 22 FVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHKGMGWIHFSSEEELHNALQ-QE 80
Query: 362 NSIFQGRLLHVMPARHK 378
N + G LHV P R K
Sbjct: 81 NHVIDGVKLHVQPQRPK 97
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 106/211 (50%), Gaps = 34/211 (16%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKVIL-----PSTKTLALVVFLEPVEAAAAFKGLAYK 553
VKNLP + ++ EL K FGK+G + ++ ++++ V F+ P EAAA +A +
Sbjct: 243 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP-EAAA----VAVE 297
Query: 554 RYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRV 613
+ G+ L DVL + +K+D E + +R ++++ +++
Sbjct: 298 KMNGISLG-----EDVLY---VGRAQKKSDR---EEELRRKFEQERISRF-------EKL 339
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
+ +L++KNL+ DE L++ F E+ G + S KV + N + +S GFGF+ + + E
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEY---GNVTSCKV---MMNSQGLSRGFGFVAYSNPE 393
Query: 674 TATNVCRDLQGTILDGHALILQLCHAKKDEQ 704
A +++ G ++ L + L K++ Q
Sbjct: 394 EALLAMKEMNGKMIGRKPLYVALAQRKEERQ 424
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKNLPK +T+D L+ F + G+I+ A +M+ + G SR F F+ F + + A A++
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Query: 61 FN 62
N
Sbjct: 299 MN 300
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 60/105 (57%), Gaps = 13/105 (12%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V+NLP T+DEL++ F K+G++S +V+ + S+ +V + PE+A+ A+E +
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 361 DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEER 405
+ +L+V R +K SD++E L+++ E+ER
Sbjct: 300 NGISLGEDVLYV--GRAQKKSDREE----------ELRRKFEQER 332
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S + +KNL V +++L++ FS+ G +T K+M G SR F F+ + +EA A+K
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 401
Query: 61 FNKSYLDTCRISCEIARK 78
N + + +A++
Sbjct: 402 MNGKMIGRKPLYVALAQR 419
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA 353
E L+ L+++NL + +++L+E FS++GNV+ ++++ S+G +V Y+ PE A
Sbjct: 337 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQG-LSRGFGFVAYSNPEEA 395
Query: 354 SRAIEVLDNSIFQGRLLHVMPARHKK 379
A++ ++ + + L+V A+ K+
Sbjct: 396 LLAMKEMNGKMIGRKPLYVALAQRKE 421
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 135/306 (44%), Gaps = 49/306 (16%)
Query: 287 SSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVL 346
S++D + G +F++NL + L E FS FG + + +D RSKG +V
Sbjct: 134 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQ 192
Query: 347 YAIPESASRAIEVL------DNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTL-KQ 399
+ E+A AI+ L D +F G H + + + S+ + + T+ K L K+
Sbjct: 193 FEKEETAQAAIDKLNGMLLNDKQVFVG---HFVRRQDRARSESGAVPSFTNVYVKNLPKE 249
Query: 400 RREEERKAS--------------EASGNTKAWNSL-FMRPDTVVENIARKHGVSKSDLLD 444
++E K + + SGN++++ + F+ P+ + + +G+S + +
Sbjct: 250 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDV- 308
Query: 445 REANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPY 504
+ +G Q ++ ++ L E+ + + L+ SN +KNL
Sbjct: 309 ---------LYVGRAQKKSDREEELRR------KFEQERISRFEKLQGSN--LYLKNLDD 351
Query: 505 DSSEGELAKMFGKFGSLD--KVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVP 559
++ +L +MF ++G++ KV++ S ++ V + P EA A K + K P
Sbjct: 352 SVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKP 411
Query: 560 LYLEWA 565
LY+ A
Sbjct: 412 LYVALA 417
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
L+V +L + E L + F++ V + + D T RS G AYV +A PE ASRA+E L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 361 DNSIFQGRLLHVM 373
+ + + R + +M
Sbjct: 120 NYAPIRDRPIRIM 132
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKNL + D+ L+K FG K G I S V +K+ S FGF+ F S E A
Sbjct: 240 NVYVKNLPKEITDDELKKTFG---KYGDISSAVV---MKDQSGNSRSFGFVNFVSPEAAA 293
Query: 677 NVCRDLQGTILDGHALILQLCHAKKD--EQVVKKAEKDKSS 715
+ G L L + K D E++ +K E+++ S
Sbjct: 294 VAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS 334
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ +KNL + L + FS G I K+ G+S+ + F+ F E+ A+ AI N
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 63 KSYLD 67
L+
Sbjct: 208 GMLLN 212
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 590 DAKRALLEQQLEGVTDADI-------DPD-RVESR-SLFVKNLNFKTCDENLRKHFGEHI 640
DA RA+ + D I DP R+ + ++F+KNL+ ++ L + F
Sbjct: 111 DASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSF- 169
Query: 641 KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688
G ILS KV + G+ S G+GF++F+ ETA L G +L+
Sbjct: 170 --GTILSCKVAMDVV-GR--SKGYGFVQFEKEETAQAAIDKLNGMLLN 212
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPE 351
Q+ + + ++V+N+ TE+ELR+HFS+ G ++ ++ D+ K SKG +V ++ PE
Sbjct: 297 QKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPE 355
Query: 352 SASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEAS 411
A A++ +F G+ L+V A+ KK K +L R E + +S AS
Sbjct: 356 EAIDAVKTFHGQMFHGKPLYVAIAQ-KKEDRKMQLQ-------VQFGNRVEARKSSSSAS 407
Query: 412 GNTKAWNSLF 421
N + L+
Sbjct: 408 VNPGTYAPLY 417
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
S I VKN+ VTE+ LR FSQ G IT KLM + GKS+ F F+ F T +EA +A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 61 FNKSYLDTCRISCEIARKVGDPNM 84
F+ + IA+K D M
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKM 387
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 11/112 (9%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR-SKGIAYVLYAIPESASRAIEV 359
L+++NL +ED LRE F++FG + V + + KD R +G A+V + PE A RA E
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 360 LDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEAS 411
++ + F + L+V R +K +++++L + K++ EE++ ++ S
Sbjct: 261 VNGTKFGSKCLYV--GRAQKKAEREQLLR------EQFKEKHEEQKMIAKVS 304
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62
+ VKNLP+ VT L+D F + G I K+ +DGKSR + F+ F E A AI+ N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 63 KS 64
+
Sbjct: 174 ST 175
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKN+N +E LRKHF + G I S K+ + + K S GFGF+ F + E A
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQC---GTITSTKL---MCDEKGKSKGFGFVCFSTPEEAI 358
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQV 705
+ + G + G L + + K+D ++
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKM 387
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G +FV+NLP + T L++ F KFGN+ + +D K S+G +V + ++A AI+
Sbjct: 112 GNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK-SRGYGFVQFEQEDAAHAAIQ 170
Query: 359 VLDNSIFQGRLLHV 372
L+++I + ++V
Sbjct: 171 TLNSTIVADKEIYV 184
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
+ L+V +L + TE L + F++F +++ V + D + RS Y + + A+ AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 358 EVLDNSIFQGRLLHVM 373
E +NS+ G+++ VM
Sbjct: 83 EKKNNSLLNGKMIRVM 98
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + +KNL V+ED LR+ F++ G+I + + ++ R +AF+ F ++A A +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 61 FN 62
N
Sbjct: 261 VN 262
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++FVKNL + L+ F K G I+S KV L++GK S G+GF++F+ + A
Sbjct: 113 NVFVKNLPESVTNAVLQDMFK---KFGNIVSCKVAT-LEDGK--SRGYGFVQFEQEDAAH 166
Query: 677 NVCRDLQGTIL 687
+ L TI+
Sbjct: 167 AAIQTLNSTIV 177
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LFV ++P TATE+E+R +F + GNV EV ++ DK T + +G +V YA + A RAI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 360 LDNSI 364
L N I
Sbjct: 181 LHNQI 185
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+LFV +L ATE E+ E F +FG+V +V+++ D + ++S+G +V Y+ E+A AI+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 360 LDNS 363
L+ +
Sbjct: 271 LNGT 274
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIK 59
++ V ++P+ TE+ +R +F Q G + + L++ K G+ + F+ + T ++A+ AI+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESAS 354
+ S ++FV + Y+ E LRE FSK+G V + I+VD++T RS+G A+V + E AS
Sbjct: 30 CMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEAS 89
Query: 355 RAIEVLDNSIFQGRLLHV 372
A++ LD GR + V
Sbjct: 90 NAMQ-LDGQDLHGRRIRV 106
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S+I V + E LR+ FS+ GE+ DAK++ ++ G+SR FAF+ F + +EA A++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
+ S +FV +++ T + LR+ F K G ++ K+ + G+ S GF F+ F S
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFS---KYGEVVDAKIIVDRETGR--SRGFAFVTFTST 85
Query: 673 ETATNVCRDLQGTILDGHAL 692
E A+N + LDG L
Sbjct: 86 EEASNAMQ------LDGQDL 99
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V NLP++ T ++L FSK+G V +V I+ DKDT++SKG+A++L+ +SA +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 361 DNSIFQGRLL 370
+N GR++
Sbjct: 72 NNKQLFGRVI 81
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIK 59
S + V NLP +T + L FS+ G++ +M+ KD KS+ AFI F + A+ +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 69
Query: 60 YFNKSYL 66
N L
Sbjct: 70 AINNKQL 76
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 489 GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLE 539
GL S V NLP+ + +L ++F K+G + KV + +K +A ++FL+
Sbjct: 4 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 62.8 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRA 356
E G+LFV L + E L +HFS FG +SEV +V D++T+RS+G ++ + PE AS A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 357 IEVLDNSIFQGRLLHV 372
+ ++ GR + V
Sbjct: 64 MRAMNGESLDGRQIRV 79
Score = 39.7 bits (91), Expect = 0.092, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVE 673
E LFV LNF T ++ L HF ++ VK ++ + S GFGFI F + E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPE 58
Query: 674 TATNVCRDLQGTILDGHAL 692
A+ R + G LDG +
Sbjct: 59 HASVAMRAMNGESLDGRQI 77
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 281 PGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
PGN V++++ R ++V N+ Y AT +EL HF G+V+ V I+ DK T
Sbjct: 144 PGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHP 203
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSS 381
KG AY+ + ES ++ LD S+F+GR + V+P R +
Sbjct: 204 KGFAYIEFCDKESVRTSL-ALDESLFRGRQIKVVPKRTNRPG 244
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
GRL+V NLP++ T +L E F++ G V+ V IV D+ T RS+G A+V E A AI
Sbjct: 114 GRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIR 173
Query: 359 VLDNSIFQGRLLHV 372
+ D S GR + V
Sbjct: 174 LFDGSQVGGRTVKV 187
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLM--RTKDGKSRQFAFIGFRTEQEAEEAIK 59
R+ V NLP +T +L + F++ G + + +++ R D +SR FAF+ + +EA+EAI+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTD-RSRGFAFVTMGSVEEAKEAIR 173
Query: 60 YFNKSYLDTCRISCEIARKVGDPNMPR 86
F+ S + + KV P +PR
Sbjct: 174 LFDGSQVGGRTV------KVNFPEVPR 194
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359
+L+V NL + T LR+ F+ ++ D+ + RS+G ++ ++ E+ + A++
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 360 LDNSIFQGRLLHVMPARHK 378
++ +GR L + A K
Sbjct: 278 MNEVELEGRPLRLNVAGQK 296
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 35/208 (16%)
Query: 499 VKNLPYDSSEGELAKMFGKFGSLDKV------ILPSTKTLALVVFLEPVEAAAAFKGLAY 552
V NLP+ + +L+++F + G++ V + ++ A V EA A +
Sbjct: 118 VGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDG 177
Query: 553 KRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDR 612
+ G T K N GE + A + +G D+ P +
Sbjct: 178 SQVGG----------------RTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDS---PHK 218
Query: 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSV 672
L+V NL++ + LR F + + +S KV +G+ S GFGFI F S
Sbjct: 219 -----LYVANLSWALTSQGLRDAFAD---QPGFMSAKVIYDRSSGR--SRGFGFITFSSA 268
Query: 673 ETATNVCRDLQGTILDGHALILQLCHAK 700
E + + L+G L L + K
Sbjct: 269 EAMNSALDTMNEVELEGRPLRLNVAGQK 296
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKY 60
++ V NL +T LRD F+ + AK++ + G+SR F FI F + + A+
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 61 FNKSYLD 67
N+ L+
Sbjct: 278 MNEVELE 284
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358
G+LFV L + TE+ L + FSK+G V+EV +V D+++KRS+G +V + PE A A+
Sbjct: 6 GKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMM 65
Query: 359 VLDNSIFQGRLLHVMPA 375
++ GR + V A
Sbjct: 66 AMNGKSVDGRQIRVDQA 82
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677
LFV LNF+T +E+L + F ++ + ++ VK ++ + S GFGF+ F++ E A +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKR-----SRGFGFVTFENPEDAKD 62
Query: 678 VCRDLQGTILDGHAL 692
+ G +DG +
Sbjct: 63 AMMAMNGKSVDGRQI 77
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGK-SRQFAFIGFRTEQEAEEAIKY 60
++ V L TE+ L FS+ G++ + +++ ++ K SR F F+ F ++A++A+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 61 FNKSYLDTCRISCEIARK 78
N +D +I + A K
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V NLP++ T ++L FSK+G V +V I+ DKD+++SKG+++VL+ ESA + L
Sbjct: 12 VYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVRGL 71
Query: 361 DNSIFQGRLL 370
+N GR +
Sbjct: 72 NNKQLFGRAI 81
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 489 GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL------PSTKTLALVVFLEPVE 542
GL S V NLP+ + +L ++F K+G + KV + +K ++ V+FL+
Sbjct: 4 GLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKES 63
Query: 543 AAAAFKGLAYKRYKG 557
A +GL K+ G
Sbjct: 64 AQNCVRGLNNKQLFG 78
Score = 36.6 bits (83), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIK 59
S + V NLP +T + L FS+ G++ +++ KD KS+ +F+ F ++ A+ ++
Sbjct: 10 STVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVR 69
Query: 60 YFNKSYLDTCRISCEIARKVG 80
N L I IA+ G
Sbjct: 70 GLNNKQLFGRAIKASIAKDNG 90
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 281 PGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
PGN V++++ R ++V N+ Y AT +EL HF G+V+ V I+ DK T
Sbjct: 143 PGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHP 202
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379
KG AY+ ++ ES ++ LD S+F+GR + V+P R +
Sbjct: 203 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVVPKRTNR 241
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 159/374 (42%), Gaps = 56/374 (14%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
S + V+NL +D L +FFS G I A ++ + G++R + F+ F ++A+ A K
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 60 YFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSE---DEKNPVLAAKRGEKK 116
L + + A PR S + K V + + P L R
Sbjct: 65 ELKNKKLHGRILRLDFA-------TPRKRSEVDTDQNKAVKKTIRQDNRPRLII-RNLPW 116
Query: 117 TIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEK-- 174
+I+K ++ +P +F +V + ++ +K + + K +E ++ G E
Sbjct: 117 SIKK-PQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDG 175
Query: 175 ---SITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWS-DSESEDDSA 230
++ V D T A+ + +N E +SD + S V +D S DSESE++
Sbjct: 176 RPIAVDWAVSKDAFEATTLKDASSEEENK---EFVSDEGH--SIVTEDASADSESEEEVD 230
Query: 231 GDDDDDD-DGEEEEEEEN----DHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPS 285
G + + GE EEE N + +GDS+ + +SI N EI D
Sbjct: 231 GHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSI--------------NHEIRD----- 271
Query: 286 SSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYV 345
E LE +FVRNL + TE EL HF +FG ++ +V D T RS G ++
Sbjct: 272 -------NEGLEDT-VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFI 323
Query: 346 LYAIPESASRAIEV 359
+ + +E+
Sbjct: 324 KFRYEKDCQNCLEM 337
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
LFVRNL + +D+L FS G + +V + +T ++G +V +++ E A RA + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 361 DNSIFQGRLLHVMPARHKKSSD 382
N GR+L + A +K S+
Sbjct: 67 KNKKLHGRILRLDFATPRKRSE 88
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+LFV+NL F+T ++L F + G I V + + G+N G+GF+ F +E A
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSD---VGPIKHAVVVTNPETGEN--RGYGFVTFSMLEDAQ 60
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQV-------VKKAEKDKSSTKLLVRNVAF 725
++L+ L G L L +K +V VKK + + +L++RN+ +
Sbjct: 61 RAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPW 116
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 38/215 (17%)
Query: 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVIL---PST---KTLALVVFLEPVEAAAA 546
SN V+NL + + + +L F G + ++ P T + V F +A A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 547 FKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDA 606
K L K+ G L L++A S+ T + N AV K+ + +
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQ----NKAV------KKTIRQ--------- 103
Query: 607 DIDPDRVESRSLFVKNLNFKTCD-ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFG 665
D P L ++NL + ++L HF K G++ +K+ G GF
Sbjct: 104 DNRP------RLIIRNLPWSIKKPQHLEPHFS---KFGKVREIKIPT---KGGGRMCGFA 151
Query: 666 FIEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700
F+ + A L GT +DG + + +K
Sbjct: 152 FVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 281 PGNPSSSSKDVQQEVLESGR-LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRS 339
PGN +++++ R ++V N+ Y AT +EL HF G+V+ V I+ DK T
Sbjct: 144 PGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHP 203
Query: 340 KGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379
KG AY+ ++ ES ++ LD S+F+GR + V+P R +
Sbjct: 204 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVVPKRTNR 242
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 168/414 (40%), Gaps = 84/414 (20%)
Query: 262 KDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321
K ++++ VG GE +D P+ SS + S L+V L + TE L E FS+
Sbjct: 27 KTTVNTNVGA-SFTGEEIDTAGPTPSSAAPHPQA--SASLYVGELDPSVTEAMLFELFSQ 83
Query: 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM-----PAR 376
G+V+ + + D T+RS G AYV Y +A+E L+ ++ +GR +M PA
Sbjct: 84 IGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPAL 143
Query: 377 HKKSS------------DKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRP 424
K D + LH++ + L + A + +GN+K + +
Sbjct: 144 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC-----KVAQDENGNSKGYGFVHYET 198
Query: 425 DTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSA 484
D EA A++ G ++ KK G ++ + S
Sbjct: 199 D--------------------EAASQAIKHVNG---MLLNEKKVYV--GHHIPKKDRQS- 232
Query: 485 GKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFL 538
K D +K + VKN+ + ++ E +F K+G + L ++ V F
Sbjct: 233 -KFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 539 EPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQ 598
+A+ A + L K + G LY+ A K +++ + + ++A R
Sbjct: 292 SHEDASKAVQELNEKEFHGQNLYVGRA----------QKKHEREEELRKSYEAARQEKAS 341
Query: 599 QLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK 652
+ +GV +L++KNL+ + DE LR+ F E G I S KV +
Sbjct: 342 KYQGV-------------NLYIKNLDDEVDDEKLRQLFSEF---GPITSAKVMR 379
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIK 59
+ I VKN+ VT+D R F + G++T + L R ++ GKSR F F+ F + ++A +A++
Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301
Query: 60 YFNK 63
N+
Sbjct: 302 ELNE 305
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
++F+KNL+ ++ L F G ILS KV + +NG S G+GF+ +++ E A+
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAF---GNILSCKVAQD-ENGN--SKGYGFVHYETDEAAS 203
Query: 677 NVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNV 723
+ + G +L+ + + KKD Q K E + T + V+N+
Sbjct: 204 QAIKHVNGMLLNEKKVYVGHHIPKKDRQ-SKFDEMKANFTNIYVKNI 249
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676
+++VKN+N + D+ R F ++ G + S + + + GK S GFGF+ F S E A+
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKY---GDVTSSSLARDQETGK--SRGFGFVNFTSHEDAS 297
Query: 677 NVCRDLQGTILDGHALIL---QLCHAKKDE--QVVKKAEKDKSS----TKLLVRNV 723
++L G L + Q H +++E + + A ++K+S L ++N+
Sbjct: 298 KAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNL 353
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR 34
+ +KNL V +++LR FS+ G IT AK+MR
Sbjct: 348 LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMR 379
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 107/463 (23%), Positives = 171/463 (36%), Gaps = 118/463 (25%)
Query: 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357
S L+V L + TE L E FS+ G+V+ + + D T+RS G AYV Y +A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 358 EVLDNSIFQGRLLHVM-----PARHKKSS------------DKQELHNSTSQGTKTLKQR 400
E L+ ++ +GR +M PA K + D + LH++ + L +
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 401 REEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQ 460
A + GN+K + + D A KH LL+ + + I + Q
Sbjct: 179 -----VAQDEHGNSKGYGFVHYETDEAASQ-AIKH--VNGMLLNEKKVYVGHHIPKKDRQ 230
Query: 461 VIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS 520
S EE A T+ VKN+ + ++ E ++F KFG
Sbjct: 231 ----------------SKFEEMKANFTN--------VYVKNINNEVTDEEFRELFAKFGE 266
Query: 521 LDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST 575
+ L ++ V F AA A L K ++G LY+ A
Sbjct: 267 VTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRA---------- 316
Query: 576 SKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKH 635
K +++ + + ++A R + +GV +L++KNL D+ LR
Sbjct: 317 QKKHEREEELRKSYEAARLEKANKYQGV-------------NLYIKNLGDDVDDDKLRAM 363
Query: 636 FGEHIKEGRILSVKV-----------------------------------KKHLKNGK-- 658
F E+ G I S KV KK K G
Sbjct: 364 FSEY---GPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRK 420
Query: 659 -NVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700
S GFGF+ F + + AT ++ ++DG L + L K
Sbjct: 421 LGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 463
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKY 60
+ + VKN+ VT++ R+ F++ GE+T + L R ++GKSR F F+ F T + A +A+
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDE 300
Query: 61 FN 62
N
Sbjct: 301 LN 302
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 41/117 (35%)
Query: 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMR---------------------------- 34
+ +KNL V +D+LR FS+ G IT AK+MR
Sbjct: 346 LYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQ 405
Query: 35 -------------TKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78
K GKS+ F F+ F +A +A+ N+ +D + +A++
Sbjct: 406 NEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQR 462
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V NLP++ T ++L FSK+G V +V I+ DKDT++SKG+A++L+ +SA +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 361 DNSIFQGRLL 370
+N GR++
Sbjct: 72 NNKQLFGRVI 81
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIK 59
S + V NLP +T + L FS+ G++ +M+ KD KS+ AFI F + A +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 60 YFNKSYL 66
N L
Sbjct: 70 AINNKQL 76
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 487 TDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLE 539
+ GL S V NLP+ + +L ++F K+G + KV + +K +A ++FL+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360
++V NLP++ T ++L FSK+G V +V I+ DKDT++SKG+A++L+ +SA +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 361 DNSIFQGRLL 370
+N GR++
Sbjct: 72 NNKQLFGRVI 81
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 489 GLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLE 539
GL S V NLP+ + +L ++F K+G + KV + +K +A ++FL+
Sbjct: 4 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDG-KSRQFAFIGFRTEQEAEEAIK 59
S + V NLP +T + L FS+ G++ +M+ KD KS+ AFI F + A +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 60 YFNKSYL 66
N L
Sbjct: 70 AINNKQL 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,154,862
Number of Sequences: 539616
Number of extensions: 12061828
Number of successful extensions: 120354
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 1293
Number of HSP's that attempted gapping in prelim test: 70983
Number of HSP's gapped (non-prelim): 21111
length of query: 731
length of database: 191,569,459
effective HSP length: 125
effective length of query: 606
effective length of database: 124,117,459
effective search space: 75215180154
effective search space used: 75215180154
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)