Query 037049
Match_columns 731
No_of_seqs 357 out of 3944
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0110 RNA-binding protein (R 100.0 8.2E-56 1.8E-60 469.0 28.4 616 34-730 2-628 (725)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-51 2.9E-56 470.3 41.9 357 1-703 1-367 (562)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.5E-46 3.3E-51 417.3 42.6 453 2-700 4-480 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-41 3.6E-46 366.1 33.9 290 298-702 3-351 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-41 8.3E-46 363.2 30.9 334 1-568 4-349 (352)
6 KOG0123 Polyadenylate-binding 100.0 5.7E-41 1.2E-45 352.9 29.7 346 2-704 3-353 (369)
7 KOG0127 Nucleolar protein fibr 100.0 1.5E-39 3.2E-44 333.9 25.7 463 1-682 6-516 (678)
8 TIGR01628 PABP-1234 polyadenyl 100.0 5.9E-39 1.3E-43 366.3 32.6 280 300-729 2-299 (562)
9 KOG0117 Heterogeneous nuclear 100.0 6.6E-39 1.4E-43 322.6 25.1 248 295-707 80-338 (506)
10 KOG0117 Heterogeneous nuclear 100.0 2.3E-38 4.9E-43 318.8 25.3 241 1-567 84-330 (506)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 4.2E-38 9.1E-43 345.2 29.3 302 1-641 59-367 (578)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.5E-37 5.5E-42 343.6 33.9 318 298-729 2-408 (481)
13 TIGR01648 hnRNP-R-Q heterogene 100.0 9.2E-37 2E-41 334.7 31.3 265 298-728 58-354 (578)
14 KOG0127 Nucleolar protein fibr 100.0 5.5E-37 1.2E-41 315.0 27.3 335 299-722 6-403 (678)
15 KOG0145 RNA-binding protein EL 100.0 6.4E-37 1.4E-41 286.8 24.9 303 1-567 42-357 (360)
16 KOG0145 RNA-binding protein EL 100.0 3.8E-36 8.2E-41 281.7 25.8 289 297-700 40-358 (360)
17 TIGR01645 half-pint poly-U bin 100.0 3.3E-35 7.2E-40 322.4 30.7 177 1-379 108-285 (612)
18 TIGR01622 SF-CC1 splicing fact 100.0 8.6E-35 1.9E-39 324.6 32.7 349 2-572 91-452 (457)
19 KOG0144 RNA-binding protein CU 100.0 1.7E-35 3.6E-40 296.5 20.2 88 609-701 418-505 (510)
20 TIGR01622 SF-CC1 splicing fact 100.0 7.2E-34 1.6E-38 317.2 32.9 298 295-700 86-448 (457)
21 KOG0110 RNA-binding protein (R 100.0 7.9E-35 1.7E-39 309.7 20.8 305 296-703 383-696 (725)
22 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.8E-33 1.5E-37 313.8 30.4 192 298-571 295-505 (509)
23 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2E-32 4.4E-37 310.0 30.9 305 291-699 168-501 (509)
24 KOG0148 Apoptosis-promoting RN 100.0 1.3E-32 2.9E-37 260.1 19.7 176 300-569 64-239 (321)
25 KOG0148 Apoptosis-promoting RN 100.0 1.9E-31 4.1E-36 252.3 20.0 173 495-703 63-241 (321)
26 KOG0123 Polyadenylate-binding 100.0 1.2E-30 2.7E-35 274.7 23.6 266 300-726 3-281 (369)
27 TIGR01659 sex-lethal sex-letha 100.0 1.5E-28 3.3E-33 257.8 22.4 167 1-380 108-277 (346)
28 KOG0124 Polypyrimidine tract-b 100.0 8.4E-28 1.8E-32 235.6 19.7 177 1-379 114-291 (544)
29 KOG1190 Polypyrimidine tract-b 100.0 2.9E-26 6.2E-31 228.8 25.2 327 300-700 152-491 (492)
30 TIGR01659 sex-lethal sex-letha 99.9 7.8E-27 1.7E-31 244.9 21.4 167 490-702 103-277 (346)
31 KOG4212 RNA-binding protein hn 99.9 4.6E-26 1E-30 228.5 23.4 238 3-564 47-290 (608)
32 TIGR01645 half-pint poly-U bin 99.9 1.9E-25 4.2E-30 245.7 21.0 175 492-701 105-285 (612)
33 KOG0147 Transcriptional coacti 99.9 1.1E-25 2.4E-30 234.2 14.0 336 3-569 182-529 (549)
34 KOG0124 Polypyrimidine tract-b 99.9 2.6E-24 5.5E-29 211.2 20.7 171 296-565 111-287 (544)
35 KOG0147 Transcriptional coacti 99.9 9.2E-24 2E-28 220.0 14.7 297 293-698 174-526 (549)
36 KOG0131 Splicing factor 3b, su 99.9 3E-23 6.4E-28 186.1 12.0 167 2-380 11-179 (203)
37 KOG0131 Splicing factor 3b, su 99.9 8.9E-23 1.9E-27 183.0 12.7 167 492-703 7-180 (203)
38 KOG0144 RNA-binding protein CU 99.9 6.9E-23 1.5E-27 206.2 12.6 163 297-568 33-206 (510)
39 KOG4211 Splicing factor hnRNP- 99.9 6E-21 1.3E-25 196.4 26.7 348 299-681 104-491 (510)
40 KOG1456 Heterogeneous nuclear 99.9 3.6E-19 7.7E-24 176.1 31.6 346 303-699 127-490 (494)
41 KOG0109 RNA-binding protein LA 99.9 1.8E-21 3.9E-26 186.7 10.8 149 1-379 3-151 (346)
42 KOG0146 RNA-binding protein ET 99.9 8.3E-21 1.8E-25 179.5 14.0 87 611-702 281-367 (371)
43 KOG0109 RNA-binding protein LA 99.8 1.2E-20 2.5E-25 181.1 10.3 148 496-701 4-151 (346)
44 KOG1190 Polypyrimidine tract-b 99.8 9.6E-19 2.1E-23 175.3 19.7 316 295-701 25-374 (492)
45 KOG4205 RNA-binding protein mu 99.8 2.5E-19 5.4E-24 182.0 11.0 171 1-380 7-178 (311)
46 KOG0146 RNA-binding protein ET 99.8 4.6E-19 1E-23 167.8 10.5 92 289-380 276-367 (371)
47 KOG4211 Splicing factor hnRNP- 99.8 1.4E-17 3E-22 171.8 21.2 291 295-697 7-355 (510)
48 KOG0120 Splicing factor U2AF, 99.7 2.5E-17 5.5E-22 175.1 14.9 186 299-570 290-494 (500)
49 KOG4212 RNA-binding protein hn 99.7 4E-17 8.7E-22 164.6 15.4 242 298-697 44-291 (608)
50 KOG4206 Spliceosomal protein s 99.7 1.4E-16 3.1E-21 149.7 15.8 209 295-566 6-220 (221)
51 KOG4206 Spliceosomal protein s 99.7 2.2E-16 4.7E-21 148.5 15.6 194 494-698 9-220 (221)
52 KOG1456 Heterogeneous nuclear 99.7 1.4E-14 3E-19 143.9 25.4 316 295-729 28-420 (494)
53 KOG0105 Alternative splicing f 99.7 3E-15 6.5E-20 134.6 16.9 77 1-79 7-83 (241)
54 KOG4205 RNA-binding protein mu 99.7 3.7E-16 8.1E-21 158.9 10.8 167 297-569 5-177 (311)
55 KOG0105 Alternative splicing f 99.6 2.9E-15 6.2E-20 134.8 14.1 180 296-563 4-185 (241)
56 PLN03134 glycine-rich RNA-bind 99.6 1.1E-15 2.3E-20 140.6 11.7 80 1-80 35-115 (144)
57 KOG0120 Splicing factor U2AF, 99.6 5.6E-15 1.2E-19 157.4 16.6 290 294-697 171-489 (500)
58 KOG1548 Transcription elongati 99.6 2.1E-14 4.5E-19 142.0 19.0 200 295-567 131-351 (382)
59 KOG1457 RNA binding protein (c 99.6 7.8E-15 1.7E-19 136.0 12.9 237 295-556 31-274 (284)
60 PLN03134 glycine-rich RNA-bind 99.6 6.2E-15 1.3E-19 135.5 11.7 86 612-702 31-116 (144)
61 KOG1365 RNA-binding protein Fu 99.6 2.9E-14 6.2E-19 142.1 13.4 284 297-700 59-362 (508)
62 KOG1457 RNA binding protein (c 99.6 3.4E-14 7.4E-19 131.8 12.7 186 493-687 33-273 (284)
63 KOG1548 Transcription elongati 99.6 1.9E-13 4.2E-18 135.2 17.9 194 493-701 133-353 (382)
64 PF00076 RRM_1: RNA recognitio 99.5 2E-14 4.4E-19 115.7 9.0 70 3-72 1-70 (70)
65 KOG1365 RNA-binding protein Fu 99.5 1.2E-13 2.6E-18 137.6 12.4 187 300-567 163-361 (508)
66 KOG0122 Translation initiation 99.5 7.6E-14 1.6E-18 131.8 9.3 79 1-79 190-269 (270)
67 KOG0106 Alternative splicing f 99.5 7.2E-14 1.6E-18 133.3 8.7 167 300-566 3-169 (216)
68 KOG0149 Predicted RNA-binding 99.5 7.2E-14 1.6E-18 131.6 8.4 79 1-80 13-92 (247)
69 KOG0122 Translation initiation 99.5 2.9E-13 6.2E-18 127.9 12.2 85 294-378 185-269 (270)
70 PF00076 RRM_1: RNA recognitio 99.5 2.6E-13 5.6E-18 109.2 10.0 70 301-371 1-70 (70)
71 PF14259 RRM_6: RNA recognitio 99.5 2.1E-13 4.6E-18 109.8 9.2 70 3-72 1-70 (70)
72 KOG4307 RNA binding protein RB 99.4 7.1E-12 1.5E-16 133.8 20.3 82 295-377 431-513 (944)
73 KOG0125 Ataxin 2-binding prote 99.4 3.7E-13 8.1E-18 132.1 9.6 81 614-701 95-175 (376)
74 PLN03213 repressor of silencin 99.4 3.7E-13 8.1E-18 138.1 9.2 77 1-80 11-89 (759)
75 KOG0106 Alternative splicing f 99.4 2.9E-13 6.2E-18 129.3 7.9 170 496-701 3-172 (216)
76 KOG0107 Alternative splicing f 99.4 4E-13 8.6E-18 120.6 7.8 76 1-80 11-86 (195)
77 PLN03120 nucleic acid binding 99.4 1.1E-12 2.4E-17 128.7 10.9 76 1-79 5-80 (260)
78 KOG0121 Nuclear cap-binding pr 99.4 8.1E-13 1.7E-17 112.1 7.3 78 1-78 37-115 (153)
79 PF14259 RRM_6: RNA recognitio 99.4 3.1E-12 6.8E-17 102.9 9.5 70 301-371 1-70 (70)
80 KOG0149 Predicted RNA-binding 99.4 1.3E-12 2.7E-17 123.4 7.5 80 297-377 11-90 (247)
81 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.5E-17 128.8 7.5 77 2-79 98-174 (376)
82 KOG0121 Nuclear cap-binding pr 99.4 1.7E-12 3.6E-17 110.2 7.1 84 294-377 32-115 (153)
83 KOG0126 Predicted RNA-binding 99.4 9.1E-14 2E-18 125.1 -0.6 75 3-77 38-113 (219)
84 KOG0126 Predicted RNA-binding 99.3 2E-13 4.4E-18 122.8 1.0 91 289-379 26-116 (219)
85 KOG4207 Predicted splicing fac 99.3 2E-12 4.3E-17 118.9 7.1 84 613-701 11-94 (256)
86 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.5E-16 127.8 14.1 78 1-78 116-194 (306)
87 PLN03120 nucleic acid binding 99.3 7.4E-12 1.6E-16 122.9 10.6 77 298-378 4-80 (260)
88 KOG0114 Predicted RNA-binding 99.3 8.6E-12 1.9E-16 101.8 8.9 79 615-701 18-96 (124)
89 KOG0107 Alternative splicing f 99.3 4.5E-12 9.7E-17 113.9 7.9 79 614-702 9-87 (195)
90 smart00362 RRM_2 RNA recogniti 99.3 1E-11 2.2E-16 99.9 9.0 72 2-74 1-72 (72)
91 KOG4207 Predicted splicing fac 99.3 3.4E-12 7.3E-17 117.4 6.2 84 295-378 10-93 (256)
92 COG0724 RNA-binding proteins ( 99.3 2.5E-11 5.5E-16 126.3 13.8 80 298-377 115-194 (306)
93 PLN03121 nucleic acid binding 99.3 1.4E-11 3E-16 118.8 9.9 73 2-77 7-79 (243)
94 PLN03213 repressor of silencin 99.3 1.3E-11 2.8E-16 127.0 9.7 78 297-378 9-88 (759)
95 KOG0111 Cyclophilin-type pepti 99.3 3.1E-12 6.8E-17 118.4 4.6 86 295-380 7-92 (298)
96 KOG0130 RNA-binding protein RB 99.3 1E-11 2.2E-16 106.3 7.3 78 3-80 75-153 (170)
97 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.4E-16 119.5 9.0 78 1-78 102-180 (335)
98 KOG0113 U1 small nuclear ribon 99.3 1.7E-11 3.7E-16 119.2 9.2 83 296-378 99-181 (335)
99 KOG0114 Predicted RNA-binding 99.2 4.3E-11 9.3E-16 97.8 9.4 81 295-378 15-95 (124)
100 smart00360 RRM RNA recognition 99.2 3.4E-11 7.4E-16 96.4 8.3 70 5-74 1-71 (71)
101 KOG0130 RNA-binding protein RB 99.2 1.9E-11 4.2E-16 104.6 6.8 86 295-380 69-154 (170)
102 cd00590 RRM RRM (RNA recogniti 99.2 7.3E-11 1.6E-15 95.4 10.0 74 2-75 1-74 (74)
103 PLN03121 nucleic acid binding 99.2 5.3E-11 1.2E-15 114.8 10.4 77 297-377 4-80 (243)
104 KOG4660 Protein Mei2, essentia 99.2 1.7E-10 3.8E-15 121.8 15.0 72 295-371 72-143 (549)
105 smart00362 RRM_2 RNA recogniti 99.2 7.8E-11 1.7E-15 94.7 9.2 72 300-373 1-72 (72)
106 KOG0111 Cyclophilin-type pepti 99.2 9.6E-12 2.1E-16 115.2 3.7 85 613-702 8-92 (298)
107 smart00360 RRM RNA recognition 99.2 1.3E-10 2.8E-15 93.0 8.5 71 303-373 1-71 (71)
108 KOG0108 mRNA cleavage and poly 99.1 7.3E-11 1.6E-15 125.8 8.4 78 1-78 19-97 (435)
109 KOG0108 mRNA cleavage and poly 99.1 1.1E-10 2.4E-15 124.4 9.0 84 616-704 19-102 (435)
110 cd00590 RRM RRM (RNA recogniti 99.1 5.1E-10 1.1E-14 90.3 10.0 74 300-374 1-74 (74)
111 PF13893 RRM_5: RNA recognitio 99.1 2.8E-10 6.1E-15 86.9 7.4 55 511-565 1-56 (56)
112 KOG0129 Predicted RNA-binding 99.1 1.7E-09 3.7E-14 113.5 14.6 64 296-359 368-432 (520)
113 PF13893 RRM_5: RNA recognitio 99.1 4.7E-10 1E-14 85.6 7.9 56 632-697 1-56 (56)
114 KOG4307 RNA binding protein RB 99.1 2.3E-09 4.9E-14 115.1 15.5 192 492-697 309-511 (944)
115 smart00361 RRM_1 RNA recogniti 99.0 8.3E-10 1.8E-14 88.5 7.6 64 629-695 2-70 (70)
116 smart00361 RRM_1 RNA recogniti 99.0 1.8E-09 3.9E-14 86.5 8.1 62 312-373 2-70 (70)
117 KOG4208 Nucleolar RNA-binding 98.9 2.5E-09 5.3E-14 99.4 7.8 77 3-79 52-130 (214)
118 KOG0128 RNA-binding protein SA 98.9 1.5E-10 3.3E-15 127.6 -2.3 239 296-699 569-814 (881)
119 KOG4454 RNA binding protein (R 98.9 4.1E-10 8.9E-15 104.8 0.9 72 2-74 11-82 (267)
120 KOG0415 Predicted peptidyl pro 98.9 9.2E-10 2E-14 109.2 2.8 84 295-378 236-319 (479)
121 KOG4208 Nucleolar RNA-binding 98.9 1.2E-08 2.6E-13 94.9 9.6 85 612-700 46-130 (214)
122 KOG0226 RNA-binding proteins [ 98.9 2.2E-09 4.7E-14 102.5 4.7 79 300-378 192-270 (290)
123 KOG0128 RNA-binding protein SA 98.8 3.2E-10 6.9E-15 125.1 -3.0 144 295-565 664-812 (881)
124 KOG4660 Protein Mei2, essentia 98.8 1.6E-08 3.4E-13 107.3 8.5 67 2-72 77-143 (549)
125 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.8E-08 3.8E-13 105.8 7.3 78 2-79 407-485 (940)
126 KOG0415 Predicted peptidyl pro 98.7 1.8E-08 3.8E-13 100.3 6.4 79 2-80 241-320 (479)
127 KOG4210 Nuclear localization s 98.7 1.7E-08 3.7E-13 103.2 5.8 174 493-703 87-267 (285)
128 KOG0533 RRM motif-containing p 98.7 5.8E-08 1.3E-12 95.4 8.6 78 1-78 84-161 (243)
129 KOG0132 RNA polymerase II C-te 98.7 4.2E-08 9.1E-13 107.2 8.1 75 1-80 422-496 (894)
130 KOG4210 Nuclear localization s 98.7 2.4E-08 5.1E-13 102.2 5.7 80 300-380 186-266 (285)
131 KOG0226 RNA-binding proteins [ 98.7 1.6E-08 3.5E-13 96.6 3.9 150 512-701 117-271 (290)
132 KOG0151 Predicted splicing reg 98.6 3.3E-08 7.2E-13 106.8 6.0 116 612-730 171-289 (877)
133 KOG0153 Predicted RNA-binding 98.6 7.7E-08 1.7E-12 96.1 7.8 77 612-699 225-302 (377)
134 KOG0151 Predicted splicing reg 98.6 5.1E-08 1.1E-12 105.4 6.8 85 1-85 175-263 (877)
135 PF04059 RRM_2: RNA recognitio 98.6 3.3E-07 7.1E-12 77.0 10.1 86 616-704 2-91 (97)
136 KOG0153 Predicted RNA-binding 98.6 7.8E-08 1.7E-12 96.1 7.2 73 1-78 229-302 (377)
137 KOG0132 RNA polymerase II C-te 98.6 7.3E-08 1.6E-12 105.4 7.3 75 493-567 420-494 (894)
138 KOG0129 Predicted RNA-binding 98.6 6.7E-07 1.5E-11 94.3 13.7 168 291-549 252-432 (520)
139 KOG4661 Hsp27-ERE-TATA-binding 98.5 3.3E-07 7E-12 96.5 10.0 88 291-378 398-485 (940)
140 KOG0112 Large RNA-binding prot 98.5 5.5E-08 1.2E-12 108.2 4.5 164 290-566 364-529 (975)
141 PF11608 Limkain-b1: Limkain b 98.5 4.8E-07 1E-11 71.8 8.1 73 616-702 3-79 (90)
142 KOG0112 Large RNA-binding prot 98.5 9.5E-08 2.1E-12 106.3 4.4 77 298-380 455-533 (975)
143 PF04059 RRM_2: RNA recognitio 98.5 1.2E-06 2.6E-11 73.6 9.8 79 299-377 2-86 (97)
144 KOG0533 RRM motif-containing p 98.4 1.2E-06 2.7E-11 86.2 8.4 81 299-380 84-164 (243)
145 KOG4454 RNA binding protein (R 98.3 1.3E-07 2.7E-12 88.5 1.2 80 295-376 6-85 (267)
146 KOG0116 RasGAP SH3 binding pro 98.3 9.7E-07 2.1E-11 94.0 7.7 79 2-81 290-369 (419)
147 KOG4209 Splicing factor RNPS1, 98.3 1.3E-06 2.8E-11 86.5 6.0 76 2-78 103-179 (231)
148 KOG4676 Splicing factor, argin 98.2 1.9E-06 4.2E-11 87.3 5.7 200 299-556 8-214 (479)
149 KOG0116 RasGAP SH3 binding pro 98.1 5.7E-06 1.2E-10 88.2 8.2 85 612-702 285-369 (419)
150 KOG4209 Splicing factor RNPS1, 98.1 4.7E-06 1E-10 82.4 6.1 85 611-701 97-181 (231)
151 PF11608 Limkain-b1: Limkain b 98.0 3.4E-05 7.4E-10 61.5 7.6 71 495-569 3-78 (90)
152 KOG2193 IGF-II mRNA-binding pr 97.9 1.3E-06 2.8E-11 89.2 -1.8 74 300-376 82-155 (584)
153 KOG4676 Splicing factor, argin 97.9 1.1E-05 2.4E-10 81.9 4.8 73 3-76 10-86 (479)
154 KOG2193 IGF-II mRNA-binding pr 97.9 2E-06 4.3E-11 87.9 -1.3 152 300-570 3-159 (584)
155 KOG3152 TBP-binding protein, a 97.6 4.1E-05 8.8E-10 73.9 3.4 73 297-369 73-157 (278)
156 PF08777 RRM_3: RNA binding mo 97.6 0.00015 3.3E-09 62.6 5.8 78 615-703 1-83 (105)
157 PF08777 RRM_3: RNA binding mo 97.5 0.00021 4.7E-09 61.7 6.7 70 495-564 2-76 (105)
158 COG5175 MOT2 Transcriptional r 97.4 0.00034 7.4E-09 69.8 6.8 75 3-77 117-201 (480)
159 KOG1995 Conserved Zn-finger pr 97.4 0.0002 4.3E-09 72.9 5.1 89 612-702 63-156 (351)
160 KOG1995 Conserved Zn-finger pr 97.2 0.00029 6.3E-09 71.8 4.4 85 295-379 63-155 (351)
161 KOG2314 Translation initiation 97.2 0.0006 1.3E-08 72.8 6.0 76 2-77 60-142 (698)
162 COG5175 MOT2 Transcriptional r 97.2 0.00088 1.9E-08 67.0 6.6 84 295-378 111-203 (480)
163 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.002 4.3E-08 54.7 7.2 71 493-565 5-89 (100)
164 KOG4849 mRNA cleavage factor I 97.0 0.00044 9.5E-09 69.4 3.4 73 2-74 82-157 (498)
165 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.002 4.3E-08 48.0 5.8 52 495-547 2-53 (53)
166 KOG2314 Translation initiation 97.0 0.0034 7.3E-08 67.3 9.3 76 300-376 60-142 (698)
167 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0039 8.5E-08 46.4 5.1 51 2-58 3-53 (53)
168 KOG1855 Predicted RNA-binding 96.7 0.0018 3.9E-08 67.3 4.3 74 611-687 227-311 (484)
169 KOG0115 RNA-binding protein p5 96.6 0.0046 1E-07 60.2 6.7 107 541-701 5-115 (275)
170 KOG1996 mRNA splicing factor [ 96.4 0.0062 1.4E-07 60.1 5.7 74 494-567 281-366 (378)
171 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.015 3.3E-07 49.4 7.0 74 2-77 8-90 (100)
172 KOG2416 Acinus (induces apopto 96.3 0.0047 1E-07 66.7 4.7 78 490-567 440-521 (718)
173 KOG3152 TBP-binding protein, a 96.2 0.0027 5.9E-08 61.7 2.5 75 614-691 73-157 (278)
174 KOG2202 U2 snRNP splicing fact 96.2 0.0024 5.1E-08 62.3 1.8 65 630-700 83-148 (260)
175 KOG0115 RNA-binding protein p5 96.2 0.016 3.5E-07 56.5 7.3 76 300-376 33-112 (275)
176 KOG4849 mRNA cleavage factor I 96.0 0.013 2.9E-07 59.1 6.3 79 298-376 80-160 (498)
177 KOG1855 Predicted RNA-binding 96.0 0.0059 1.3E-07 63.6 3.7 63 491-553 228-309 (484)
178 PF08952 DUF1866: Domain of un 95.7 0.042 9.1E-07 49.6 7.5 78 611-702 23-109 (146)
179 PF08952 DUF1866: Domain of un 95.6 0.033 7.2E-07 50.3 6.4 56 16-79 52-107 (146)
180 KOG1996 mRNA splicing factor [ 95.4 0.039 8.5E-07 54.6 6.6 64 14-77 300-365 (378)
181 KOG2202 U2 snRNP splicing fact 95.3 0.0091 2E-07 58.3 2.0 63 15-77 83-146 (260)
182 KOG2416 Acinus (induces apopto 94.9 0.057 1.2E-06 58.7 6.5 78 294-377 440-521 (718)
183 PF08675 RNA_bind: RNA binding 94.6 0.15 3.2E-06 41.1 6.8 54 495-551 10-63 (87)
184 KOG2318 Uncharacterized conser 94.3 0.24 5.3E-06 54.0 9.7 80 295-375 171-305 (650)
185 PF15023 DUF4523: Protein of u 94.3 0.2 4.4E-06 44.6 7.5 76 490-567 82-161 (166)
186 PF08675 RNA_bind: RNA binding 94.3 0.16 3.5E-06 41.0 6.2 53 300-361 11-63 (87)
187 PF15023 DUF4523: Protein of u 94.1 0.25 5.3E-06 44.0 7.6 76 611-699 82-161 (166)
188 KOG2068 MOT2 transcription fac 94.0 0.024 5.2E-07 57.8 1.4 75 3-78 80-162 (327)
189 PF10309 DUF2414: Protein of u 93.9 0.29 6.4E-06 37.4 6.8 53 299-360 6-62 (62)
190 KOG4285 Mitotic phosphoprotein 93.6 0.3 6.5E-06 49.0 8.1 70 494-565 197-267 (350)
191 PF10309 DUF2414: Protein of u 93.5 0.36 7.8E-06 36.9 6.6 53 2-61 7-62 (62)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.17 3.6E-06 48.3 6.0 88 614-701 6-99 (176)
193 PF04847 Calcipressin: Calcipr 93.2 0.2 4.2E-06 48.0 6.0 60 507-566 8-69 (184)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.18 3.9E-06 48.1 4.4 82 297-378 6-98 (176)
195 PF07576 BRAP2: BRCA1-associat 91.8 1.6 3.4E-05 38.0 9.3 65 300-366 15-80 (110)
196 PF04847 Calcipressin: Calcipr 91.2 0.4 8.7E-06 45.9 5.5 64 628-702 8-73 (184)
197 KOG2068 MOT2 transcription fac 90.8 0.12 2.6E-06 52.9 1.7 83 618-701 80-164 (327)
198 KOG2591 c-Mpl binding protein, 90.8 0.42 9.1E-06 51.8 5.7 73 295-374 172-248 (684)
199 PF07576 BRAP2: BRCA1-associat 89.0 2.6 5.6E-05 36.7 8.2 65 3-68 15-81 (110)
200 KOG2135 Proteins containing th 89.0 0.22 4.8E-06 52.9 1.9 74 493-567 371-445 (526)
201 KOG2135 Proteins containing th 89.0 0.28 6.1E-06 52.2 2.7 77 295-378 369-446 (526)
202 KOG4285 Mitotic phosphoprotein 88.2 0.75 1.6E-05 46.2 4.9 60 5-71 202-261 (350)
203 PF11767 SET_assoc: Histone ly 88.2 1.8 3.8E-05 33.8 5.9 55 626-694 11-65 (66)
204 KOG4574 RNA-binding protein (c 88.0 0.31 6.8E-06 55.4 2.4 75 616-701 299-375 (1007)
205 PF03880 DbpA: DbpA RNA bindin 87.9 2 4.4E-05 34.4 6.5 67 1-76 1-74 (74)
206 KOG4574 RNA-binding protein (c 87.8 0.33 7.2E-06 55.2 2.4 72 3-79 301-374 (1007)
207 PF03880 DbpA: DbpA RNA bindin 87.6 1.9 4.1E-05 34.6 6.2 62 625-697 11-74 (74)
208 KOG0804 Cytoplasmic Zn-finger 87.6 1.9 4.2E-05 45.9 7.6 68 298-367 74-142 (493)
209 PF11767 SET_assoc: Histone ly 87.1 2.7 5.8E-05 32.8 6.4 55 309-372 11-65 (66)
210 PF10567 Nab6_mRNP_bdg: RNA-re 83.6 33 0.00072 34.9 13.7 190 493-698 14-230 (309)
211 KOG2591 c-Mpl binding protein, 81.4 2.8 6E-05 45.8 5.7 70 614-695 174-247 (684)
212 KOG0804 Cytoplasmic Zn-finger 80.5 5.7 0.00012 42.5 7.5 69 614-688 73-141 (493)
213 KOG4483 Uncharacterized conser 80.2 3 6.5E-05 43.6 5.2 53 299-358 392-445 (528)
214 COG5638 Uncharacterized conser 77.6 14 0.0003 38.9 9.1 80 295-375 143-295 (622)
215 KOG2253 U1 snRNP complex, subu 75.8 2.1 4.6E-05 47.8 3.0 73 611-697 36-108 (668)
216 KOG2253 U1 snRNP complex, subu 74.2 2.3 4.9E-05 47.6 2.6 71 295-374 37-107 (668)
217 KOG4019 Calcineurin-mediated s 73.4 3.5 7.5E-05 38.6 3.2 73 495-567 11-89 (193)
218 KOG4019 Calcineurin-mediated s 72.7 3.3 7.1E-05 38.7 2.9 77 617-704 12-94 (193)
219 KOG2318 Uncharacterized conser 68.6 15 0.00032 40.7 7.1 74 2-75 176-302 (650)
220 PF07292 NID: Nmi/IFP 35 domai 61.5 10 0.00023 31.4 3.4 71 533-637 1-74 (88)
221 PTZ00415 transmission-blocking 57.6 5.2 0.00011 49.5 1.5 11 211-221 131-141 (2849)
222 PF07292 NID: Nmi/IFP 35 domai 57.4 20 0.00043 29.8 4.4 26 491-516 49-74 (88)
223 KOG4410 5-formyltetrahydrofola 55.6 41 0.00088 33.8 7.0 48 298-350 330-377 (396)
224 PF14111 DUF4283: Domain of un 54.0 18 0.00039 33.3 4.3 104 509-653 36-140 (153)
225 PF03468 XS: XS domain; Inter 51.3 16 0.00035 32.1 3.2 54 616-677 9-71 (116)
226 KOG4365 Uncharacterized conser 49.8 2.9 6.3E-05 44.3 -2.0 76 2-78 5-81 (572)
227 PF07530 PRE_C2HC: Associated 48.9 33 0.00072 26.9 4.3 63 313-378 2-65 (68)
228 PF03468 XS: XS domain; Inter 43.7 30 0.00064 30.5 3.7 55 300-357 10-74 (116)
229 KOG4483 Uncharacterized conser 42.6 32 0.0007 36.3 4.2 55 616-681 392-446 (528)
230 KOG2891 Surface glycoprotein [ 40.5 16 0.00034 36.4 1.6 35 493-527 148-194 (445)
231 PF03066 Nucleoplasmin: Nucleo 39.0 10 0.00022 35.1 0.0 10 68-77 59-68 (149)
232 PF10567 Nab6_mRNP_bdg: RNA-re 38.4 44 0.00095 34.1 4.3 85 292-376 9-106 (309)
233 PF14111 DUF4283: Domain of un 37.2 27 0.00058 32.1 2.6 63 309-377 28-91 (153)
234 KOG1295 Nonsense-mediated deca 35.9 34 0.00074 36.2 3.2 66 1-66 8-77 (376)
235 smart00596 PRE_C2HC PRE_C2HC d 34.9 78 0.0017 24.9 4.2 63 313-378 2-65 (69)
236 KOG4410 5-formyltetrahydrofola 33.3 79 0.0017 31.9 5.1 48 493-540 329-377 (396)
237 smart00596 PRE_C2HC PRE_C2HC d 33.1 67 0.0014 25.2 3.6 60 15-77 2-63 (69)
238 PF07530 PRE_C2HC: Associated 33.0 77 0.0017 24.9 4.1 60 15-77 2-63 (68)
239 KOG2295 C2H2 Zn-finger protein 32.8 6.7 0.00014 43.0 -2.5 74 296-369 229-302 (648)
240 PRK14548 50S ribosomal protein 30.0 1.9E+02 0.004 23.9 6.0 57 301-360 23-81 (84)
241 PF04147 Nop14: Nop14-like fam 29.4 1E+02 0.0022 37.4 6.3 13 311-323 427-439 (840)
242 KOG2295 C2H2 Zn-finger protein 27.5 11 0.00024 41.4 -1.9 71 1-71 232-303 (648)
243 KOG1295 Nonsense-mediated deca 26.4 63 0.0014 34.3 3.3 70 616-687 8-77 (376)
244 TIGR03636 L23_arch archaeal ri 26.1 2.5E+02 0.0055 22.7 6.0 57 301-360 16-74 (77)
245 KOG4365 Uncharacterized conser 24.7 12 0.00026 39.9 -2.2 77 300-377 5-81 (572)
246 PF15513 DUF4651: Domain of un 23.6 1.7E+02 0.0036 22.5 4.2 19 15-33 9-27 (62)
247 PF15513 DUF4651: Domain of un 21.4 1.7E+02 0.0036 22.5 3.8 21 630-653 9-29 (62)
248 KOG2891 Surface glycoprotein [ 20.3 1.1E+02 0.0023 30.8 3.3 37 614-653 148-196 (445)
No 1
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=8.2e-56 Score=469.05 Aligned_cols=616 Identities=39% Similarity=0.632 Sum_probs=426.1
Q ss_pred ecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCCCCCCCCCccccccchhhhccccCCChhhhhhcc
Q 037049 34 RTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRG 113 (731)
Q Consensus 34 ~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (731)
++++|++|+||||.|.+.++|+.||+.+|+.+|+-.+|.|+++.+.++++.|++|+++..++.... ..+++........
T Consensus 2 ~t~dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~~~~gd~~kpr~wsk~a~~~~~~~-k~~k~~~~~~~~k 80 (725)
T KOG0110|consen 2 RTKDGKFRRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFCKSFGDPNKPRPWSKYAKKSSEPK-KKEKEEEEANIKK 80 (725)
T ss_pred cCCCCceeeeeEeeeccHHHHHHHHHHhhccccccceEEEEehhhcCCcccCcchhhhhhhhhhhh-cccchhhhccccc
Confidence 456799999999999999999999999999999999999999999999999999999998877622 2222222222221
Q ss_pred CcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhccccchhhhccCCCccccccccCCCCcccccchh
Q 037049 114 EKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKVSENISQAIKGGEKSITLHVKSDKSNVITDSQA 193 (731)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (731)
++ .+......+++++|+||.++.+ +..+|.|+.-+-. ...+......+.. ++.+ +.+.
T Consensus 81 ~~-~kk~k~~~~d~efqeFle~~~~--~~~~w~n~~k~~~-----------~~~~~~~~~d~~~-~~~~-------~~~~ 138 (725)
T KOG0110|consen 81 EK-EKKKKALKDDPEFQEFLEVHRR--QSTSWENDGKSKE-----------ASKLLREDEDSAG-KGES-------LEEE 138 (725)
T ss_pred cc-cccccccccCHHHHHHHHHhcc--cchhhccccchhh-----------hhhhhhhhhhccc-cccc-------cchh
Confidence 11 1233448899999999999999 8899998874200 0011110000000 0000 0111
Q ss_pred hhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccccc-hhhcccCCCCCCCc
Q 037049 194 TEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGEEEEEEENDHNGDSNEECD-SIIKDSIHSGVGEE 272 (731)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 272 (731)
...++..+....++ +|+.+++...++....++.. -.-..++-+.=.-.-............+ ....
T Consensus 139 ~~~~~~~~~~~~is--ey~~s~~~k~~~~a~~~d~~-a~~~~~~~d~r~~~~~~~~~~~~~~k~~~~e~~---------- 205 (725)
T KOG0110|consen 139 ASKEPKAAVGKNIS--EYLKSKMVKAESEAEEEDSS-AELVTQERDVRYAGKEQGVEAGGVIKIDFSEEE---------- 205 (725)
T ss_pred hccCcchhccccHH--HHHHHHHhhhhhhccccccc-ccccccccccccchhhcCccccceeeccCchHH----------
Confidence 11112233334444 99999988773311111111 0000011000000000000000000000 0000
Q ss_pred ccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHH
Q 037049 273 DANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPES 352 (731)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~ 352 (731)
......-...........+.++.+|||+|||+.+++++|+.+| |||.|..++.
T Consensus 206 ----~v~~~~~~~~~~~~~~e~i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~ 258 (725)
T KOG0110|consen 206 ----EVKQASKANQESMGVEEDISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEH 258 (725)
T ss_pred ----hhhhcccccccccchhhHHHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHH
Confidence 0000000001111122568888999999999999999999999 8999999999
Q ss_pred HHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHH
Q 037049 353 ASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIA 432 (731)
Q Consensus 353 A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (731)
|.+|...++|+.+.||.|+|.....+.... ..... ....++... +...+. ......+||+++++.++++..++
T Consensus 259 avka~~~~D~k~fqgrmlhvlp~~~k~~~~-~~~~~----~~~~~k~~k-e~~rk~-~~~~~~~wn~l~~~~~ava~~~a 331 (725)
T KOG0110|consen 259 AVKAYSELDGKVFQGRMLHVLPSKEKSTAK-EDASE----LGSDYKKEK-ELKRKA-ASASFHSWNTLFMGANAVAGILA 331 (725)
T ss_pred HHhhhhhccccccccceeeecCcchhhhhh-hhHhh----cCCcHHHHH-Hhcccc-chhcceecccccccccHHHHHHH
Confidence 999999999999999999999988766543 22111 122244444 222233 66778899999999999999999
Q ss_pred HhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHH
Q 037049 433 RKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELA 512 (731)
Q Consensus 433 ~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~ 512 (731)
...+.....+.+......+++.++.+++...+...+....|+.+..|.. ..++.+.|+|+|||..+..++|.
T Consensus 332 ~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~--------~~rs~~vil~kNlpa~t~~~elt 403 (725)
T KOG0110|consen 332 QKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQ--------AERSDTVILVKNLPAGTLSEELT 403 (725)
T ss_pred HHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchh--------hhhhcceeeeccCccccccHHHH
Confidence 9999999999888887779999999999999999999999999999977 67888999999999999999999
Q ss_pred HHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCC--Ccccccchh
Q 037049 513 KMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQK--NDAVVGEHD 590 (731)
Q Consensus 513 ~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~ 590 (731)
.+|..||.|.++.+++....++|.|.++.+|.+|+..|.+..+...+|++.|+|.+.+...+....... .........
T Consensus 404 ~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~ 483 (725)
T KOG0110|consen 404 EAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPS 483 (725)
T ss_pred HHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcc
Confidence 999999999999887655579999999999999999999999999999999999988774422111110 000000000
Q ss_pred hHhhhHHhhhhcCCC-------CCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeec-CCCCcccc
Q 037049 591 AKRALLEQQLEGVTD-------ADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL-KNGKNVSM 662 (731)
Q Consensus 591 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~-~~~~~~~k 662 (731)
.........+..... ..........++|||+||++.+|.++|..+|...|. |.++.|...+ +.++-++.
T Consensus 484 Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~---VlS~~I~kkkd~~~k~lSm 560 (725)
T KOG0110|consen 484 ERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT---VLSIEISKKKDPANKYLSM 560 (725)
T ss_pred eecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe---EEEEEEecccccccccccc
Confidence 110111111111000 000011122233999999999999999999999988 9999998876 33356688
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchhhHHhhhccCCCCceEEEeeccceeeec
Q 037049 663 GFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQRK 730 (731)
Q Consensus 663 G~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 730 (731)
|||||+|.++++|..|++.|+|+.|.|+.|.|.+++.+......++..++++.|||||+||||+||.|
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~r 628 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKR 628 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHH
Confidence 99999999999999999999999999999999999943332222444566678999999999999976
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-51 Score=470.25 Aligned_cols=357 Identities=27% Similarity=0.402 Sum_probs=301.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
+.|||+|||.++||++|+++|++||.|.+|+|++|+. ++++|||||+|.+.++|++||..+|+..+.|+.|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 4799999999999999999999999999999999988 999999999999999999999999999999999999976521
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (562)
T TIGR01628 81 PS------------------------------------------------------------------------------ 82 (562)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
.+
T Consensus 83 ------------------------------------------------------~~------------------------ 84 (562)
T TIGR01628 83 ------------------------------------------------------LR------------------------ 84 (562)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
....++|||+|||.++++++|+++|
T Consensus 85 -------------------------------------------------------~~~~~~vfV~nLp~~~~~~~L~~~F 109 (562)
T TIGR01628 85 -------------------------------------------------------RSGVGNIFVKNLDKSVDNKALFDTF 109 (562)
T ss_pred -------------------------------------------------------ccCCCceEEcCCCccCCHHHHHHHH
Confidence 0001279999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhH
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~ 399 (731)
+.||.|.+|+|+.+. +|+++|||||.|.+.++|..|++.+||..+.|+.|.|.....+....
T Consensus 110 ~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~----------------- 171 (562)
T TIGR01628 110 SKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE----------------- 171 (562)
T ss_pred HhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc-----------------
Confidence 999999999999987 88899999999999999999999999999999999997765432100
Q ss_pred HHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccc
Q 037049 400 RREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSL 479 (731)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 479 (731)
.
T Consensus 172 -~------------------------------------------------------------------------------ 172 (562)
T TIGR01628 172 -A------------------------------------------------------------------------------ 172 (562)
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC-----CCCEEEEEeCCHHHHHHHHHhcCCCc
Q 037049 480 EEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKR 554 (731)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~-----~kg~afV~F~~~e~A~~Ai~~lng~~ 554 (731)
......++|||+|||.++++++|+++|+.||.|.++.+.+ ++|||||.|.+.++|.+|+..|+|..
T Consensus 173 ---------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 173 ---------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred ---------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 0122346799999999999999999999999999998863 57899999999999999999999999
Q ss_pred cC----CceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHH
Q 037049 555 YK----GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDE 630 (731)
Q Consensus 555 ~~----gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee 630 (731)
+. |+.|.|.++....... ...+......... ......+++|||+|||..+|++
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~-----------------~~~~~~~~~~~~~------~~~~~~~~~l~V~nl~~~~~~~ 300 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAERE-----------------AELRRKFEELQQE------RKMKAQGVNLYVKNLDDTVTDE 300 (562)
T ss_pred ecccccceeeEeecccChhhhH-----------------HHHHhhHHhhhhh------hhcccCCCEEEEeCCCCccCHH
Confidence 99 9999999986543111 0111111111100 1123456789999999999999
Q ss_pred HHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchh
Q 037049 631 NLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703 (731)
Q Consensus 631 ~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~ 703 (731)
+|+++|+.||. |.+|+|+.+. + +.++|||||+|.+.++|.+|+..|||+.|+|++|.|.+|.+++..
T Consensus 301 ~L~~~F~~~G~---i~~~~i~~d~-~--g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 301 KLRELFSECGE---ITSAKVMLDE-K--GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred HHHHHHHhcCC---eEEEEEEECC-C--CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99999999999 9999999984 4 449999999999999999999999999999999999999998765
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.5e-46 Score=417.33 Aligned_cols=453 Identities=18% Similarity=0.207 Sum_probs=288.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHh--CCCccCCceeEEEeeccC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF--NKSYLDTCRISCEIARKV 79 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~--~g~~~~g~~i~v~~a~~~ 79 (731)
.|||+|||+.+++++|+++|+.||.|.+|.|+++ +|||||+|.+.++|++||..+ ++..+.|+.|+|.++...
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 5999999999999999999999999999999975 689999999999999999864 788999999999988742
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
... ++
T Consensus 79 ~~~---~~------------------------------------------------------------------------ 83 (481)
T TIGR01649 79 EIK---RD------------------------------------------------------------------------ 83 (481)
T ss_pred ccc---cC------------------------------------------------------------------------
Confidence 100 00
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
... +
T Consensus 84 ---------------------------------------------------------~~~--~----------------- 87 (481)
T TIGR01649 84 ---------------------------------------------------------GNS--D----------------- 87 (481)
T ss_pred ---------------------------------------------------------CCC--c-----------------
Confidence 000 0
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
.+. . ......+|||+||++.+++++|+++|
T Consensus 88 ----~~~----------------------------~------------------~~~~~~~v~v~nl~~~vt~~~L~~~F 117 (481)
T TIGR01649 88 ----FDS----------------------------A------------------GPNKVLRVIVENPMYPITLDVLYQIF 117 (481)
T ss_pred ----ccC----------------------------C------------------CCCceEEEEEcCCCCCCCHHHHHHHH
Confidence 000 0 00112379999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEecCCCCCCchhhcccccccCCchh
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPARHKKSSDKQELHNSTSQGTKTL 397 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~ 397 (731)
+.||.|..|.|+++. .+|+|||+|.+.++|.+|+..|||..|.| +.|+|.|+++....-.......+.-.+..+
T Consensus 118 ~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l 193 (481)
T TIGR01649 118 NPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDL 193 (481)
T ss_pred hccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCC
Confidence 999999999998764 24799999999999999999999999964 589999998644311000000000000000
Q ss_pred hHHH---HH--HHHHhhhcc---CccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHH
Q 037049 398 KQRR---EE--ERKASEASG---NTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKAL 469 (731)
Q Consensus 398 k~~~---~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 469 (731)
...+ .. ......... ........|..........+.....+... ......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------- 251 (481)
T TIGR01649 194 PGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPH--GPPSRY-------------------- 251 (481)
T ss_pred CCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcc--cCCCCC--------------------
Confidence 0000 00 000000000 00000000000000000000000000000 000000
Q ss_pred HhcCCCcccccccccCCCCCCcCCCcEEEEeCCCC-CCCHHHHHHHhcccCceeEEEccCC-CCEEEEEeCCHHHHHHHH
Q 037049 470 TNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPY-DSSEGELAKMFGKFGSLDKVILPST-KTLALVVFLEPVEAAAAF 547 (731)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~-~~te~~L~~~F~~~G~i~~v~l~~~-kg~afV~F~~~e~A~~Ai 547 (731)
..+...................++++|||+|||. .+++++|+++|+.||.|.+|++++. +|+|||+|.+.++|..|+
T Consensus 252 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 252 -RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLAL 330 (481)
T ss_pred -cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHH
Confidence 0000000000000000001234678999999997 6999999999999999999988764 699999999999999999
Q ss_pred HhcCCCccCCceEEEEeCCCCccccCCCC--cCCCC--CcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCC
Q 037049 548 KGLAYKRYKGVPLYLEWAPSDVLSQSSTS--KGNQK--NDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNL 623 (731)
Q Consensus 548 ~~lng~~~~gr~l~v~~a~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NL 623 (731)
..|||..|.|+.|+|.++........... ..... .+.... .. .+ ........-.....++.+|||+||
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~-~~-~r------~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSS-RN-HR------FKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCC-cc-cc------CCCcccccccccCCCCcEEEEecC
Confidence 99999999999999999865432211110 00000 000000 00 00 000000000011346778999999
Q ss_pred CCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE------EEEEec
Q 037049 624 NFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA------LILQLC 697 (731)
Q Consensus 624 p~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~------l~v~~a 697 (731)
|..+|+++|+++|+.||. -.|..++++... + . .+|+|||+|.+.++|.+||..|||+.|.|+. |+|+||
T Consensus 403 p~~~tee~L~~lF~~~G~-~~i~~ik~~~~~-~-~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGV-HKVKKFKFFPKD-N-E--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred CCCCCHHHHHHHHHhcCC-ccceEEEEecCC-C-C--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999984 015566665432 2 1 5899999999999999999999999999995 999999
Q ss_pred cCC
Q 037049 698 HAK 700 (731)
Q Consensus 698 k~~ 700 (731)
+++
T Consensus 478 ~~~ 480 (481)
T TIGR01649 478 TSR 480 (481)
T ss_pred cCC
Confidence 875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-41 Score=366.07 Aligned_cols=290 Identities=26% Similarity=0.347 Sum_probs=226.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
..+|||+|||+.+++++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|..||..|||..+.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 45899999999999999999999999999999999998999999999999999999999999999999999999999875
Q ss_pred CCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhh
Q 037049 378 KKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALG 457 (731)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~ 457 (731)
...
T Consensus 83 ~~~----------------------------------------------------------------------------- 85 (352)
T TIGR01661 83 SSD----------------------------------------------------------------------------- 85 (352)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 321
Q ss_pred hhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCC
Q 037049 458 ETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKT 531 (731)
Q Consensus 458 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg 531 (731)
....++|||+|||..+++++|+.+|++||.|..+.+.. ++|
T Consensus 86 ---------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 86 ---------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKG 132 (352)
T ss_pred ---------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCc
Confidence 11234799999999999999999999999999887752 578
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccCC--ceEEEEeCCCCccccCCCCcC----C--CCCc-------------------c
Q 037049 532 LALVVFLEPVEAAAAFKGLAYKRYKG--VPLYLEWAPSDVLSQSSTSKG----N--QKND-------------------A 584 (731)
Q Consensus 532 ~afV~F~~~e~A~~Ai~~lng~~~~g--r~l~v~~a~~~~~~~~~~~~~----~--~~~~-------------------~ 584 (731)
||||+|.+.++|..|+..|||..+.| ++|.|.|+............. . .... .
T Consensus 133 ~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (352)
T TIGR01661 133 VGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAA 212 (352)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcc
Confidence 99999999999999999999999887 678899885332111000000 0 0000 0
Q ss_pred ccc--chhhHhhhH-Hhhhh----------cC-------------CCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhcc
Q 037049 585 VVG--EHDAKRALL-EQQLE----------GV-------------TDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGE 638 (731)
Q Consensus 585 ~~~--~~~~~~~~~-~~~~~----------~~-------------~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~ 638 (731)
... ......... ..... .. ...........+.+|||+|||+.+++++|+++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~ 292 (352)
T TIGR01661 213 ARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP 292 (352)
T ss_pred cccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 000 000000000 00000 00 00000111234457999999999999999999999
Q ss_pred ccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCch
Q 037049 639 HIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD 702 (731)
Q Consensus 639 ~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~ 702 (731)
||. |.+|+|+++..+|. +||||||.|.+.++|.+||..|||+.|.||.|+|+|+..+..
T Consensus 293 fG~---v~~v~i~~d~~t~~--skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 293 FGA---VQNVKIIRDLTTNQ--CKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCC---eEEEEEeEcCCCCC--ccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999 99999999976655 999999999999999999999999999999999999988753
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.8e-41 Score=363.22 Aligned_cols=334 Identities=25% Similarity=0.336 Sum_probs=226.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+.+++++|+++|+.||+|.+|+|++++. |+++|||||+|.+.++|.+||..|||..+.|++|+|.++++.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 5899999999999999999999999999999999987 999999999999999999999999999999999999988742
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
..
T Consensus 84 ~~------------------------------------------------------------------------------ 85 (352)
T TIGR01661 84 SD------------------------------------------------------------------------------ 85 (352)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 86 -------------------------------------------------------------------------------- 85 (352)
T TIGR01661 86 -------------------------------------------------------------------------------- 85 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
....++|||+|||..+++++|+.+|
T Consensus 86 -------------------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f 110 (352)
T TIGR01661 86 -------------------------------------------------------SIKGANLYVSGLPKTMTQHELESIF 110 (352)
T ss_pred -------------------------------------------------------ccccceEEECCccccCCHHHHHHHH
Confidence 0112379999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEecCCCCCCchhhcccccccCCchh
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPARHKKSSDKQELHNSTSQGTKTL 397 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~ 397 (731)
+.||.|..+.++.+..++.++|||||+|.+.++|..|+..|||..+.| +.|.|.++.............
T Consensus 111 ~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~--------- 181 (352)
T TIGR01661 111 SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLS--------- 181 (352)
T ss_pred hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCc---------
Confidence 999999999999998888999999999999999999999999999887 678888887554211111000
Q ss_pred hHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCC-c
Q 037049 398 KQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVN-V 476 (731)
Q Consensus 398 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~ 476 (731)
... .............|...-....+.... ................... .......... ....... .
T Consensus 182 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~ 249 (352)
T TIGR01661 182 -QLE--AVQNPQTTRVPLSTILTAAGIGPMHHA-AARFRPSAGDFTAVLAHQQ-QQHAVAQQHA-------AQRASPPAT 249 (352)
T ss_pred -hhh--cccCcccCCCCccccccccCCCCccCc-ccccccCcchhhhhhhhhh-hhcccccccc-------cccCCCccc
Confidence 000 000000000000000000000000000 0000000000000000000 0000000000 0000000 0
Q ss_pred cccc-ccccC-CCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHH
Q 037049 477 SSLE-EFSAG-KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFK 548 (731)
Q Consensus 477 ~~~~-~~~~~-~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~ 548 (731)
.... ..... ........+.+|||+|||+.+++++|+++|++||.|.+++|.. ++|||||+|.+.++|.+||.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~ 329 (352)
T TIGR01661 250 DGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAIL 329 (352)
T ss_pred cccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 0000 00000 0001123345799999999999999999999999999998873 68999999999999999999
Q ss_pred hcCCCccCCceEEEEeCCCC
Q 037049 549 GLAYKRYKGVPLYLEWAPSD 568 (731)
Q Consensus 549 ~lng~~~~gr~l~v~~a~~~ 568 (731)
.|||..|.||.|+|.|+..+
T Consensus 330 ~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 330 SLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HhCCCEECCeEEEEEEccCC
Confidence 99999999999999999654
No 6
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-41 Score=352.87 Aligned_cols=346 Identities=29% Similarity=0.426 Sum_probs=295.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCCC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGD 81 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~~ 81 (731)
.|||| +++|+..|.++|+.+|+|++|+|++|- + +.|||||.|.++.+|.+||..||...+.|++|+|.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 58998 999999999999999999999999999 7 99999999999999999999999999999999999665100
Q ss_pred CCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhcc
Q 037049 82 PNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKV 161 (731)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (731)
T Consensus 77 -------------------------------------------------------------------------------- 76 (369)
T KOG0123|consen 77 -------------------------------------------------------------------------------- 76 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCcc
Q 037049 162 SENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGEE 241 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e 241 (731)
T Consensus 77 -------------------------------------------------------------------------------- 76 (369)
T KOG0123|consen 77 -------------------------------------------------------------------------------- 76 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHhc
Q 037049 242 EEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321 (731)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 321 (731)
. .|||.||+..++...|..+|+.
T Consensus 77 ---------------------------------~------------------------~~~i~nl~~~~~~~~~~d~f~~ 99 (369)
T KOG0123|consen 77 ---------------------------------S------------------------LVFIKNLDESIDNKSLYDTFSE 99 (369)
T ss_pred ---------------------------------c------------------------eeeecCCCcccCcHHHHHHHHh
Confidence 0 2999999999999999999999
Q ss_pred CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHHH
Q 037049 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRR 401 (731)
Q Consensus 322 ~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~ 401 (731)
||+|++|+|..+. .| ++|| ||+|.+.+.|.+|++.+||..+.|+.|.|.....+..+.... ..
T Consensus 100 ~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~------------~~-- 162 (369)
T KOG0123|consen 100 FGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPL------------GE-- 162 (369)
T ss_pred hcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccc------------cc--
Confidence 9999999999998 67 9999 999999999999999999999999999999987653311100 00
Q ss_pred HHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccc
Q 037049 402 EEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEE 481 (731)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 481 (731)
T Consensus 163 -------------------------------------------------------------------------------- 162 (369)
T KOG0123|consen 163 -------------------------------------------------------------------------------- 162 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC-----CCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 037049 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKRYK 556 (731)
Q Consensus 482 ~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~-----~kg~afV~F~~~e~A~~Ai~~lng~~~~ 556 (731)
.....+.++|+|++..+++..|..+|..||.|..+.+++ +++|+||.|.++++|..|+..|++..++
T Consensus 163 --------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 163 --------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred --------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 011234689999999999999999999999999998874 6899999999999999999999999999
Q ss_pred CceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHh
Q 037049 557 GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHF 636 (731)
Q Consensus 557 gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F 636 (731)
+..+.|..+...... ...+++....... .........+|||+||+..++.+.|+++|
T Consensus 235 ~~~~~V~~aqkk~e~-----------------~~~l~~~~~~~~~------~~~~~~~~~nl~vknld~~~~~e~L~~~f 291 (369)
T KOG0123|consen 235 DKELYVGRAQKKSER-----------------EAELKRKFEQEFA------KRSVSLQGANLYVKNLDETLSDEKLRKIF 291 (369)
T ss_pred ccceeecccccchhh-----------------HHHHhhhhHhhhh------hccccccccccccccCccccchhHHHHHH
Confidence 999999999762211 1112222111111 11235577889999999999999999999
Q ss_pred ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchhh
Q 037049 637 GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704 (731)
Q Consensus 637 ~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~~ 704 (731)
+.||. |.+++|+.+. .+.++|||||+|.+.++|.+|+..+||..+.|++|.|.++.++....
T Consensus 292 ~~~Ge---I~s~kv~~~~---~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 292 SSFGE---ITSAKVMVDE---NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred hcccc---eeeEEEEecc---CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 99999 9999999976 34599999999999999999999999999999999999999776653
No 7
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=333.93 Aligned_cols=463 Identities=23% Similarity=0.325 Sum_probs=281.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
.+|||++||++++.++|.++|+.+|+|.+|.++.++. +.+||||||+|.-.+++++|+..+++..|.|+.|+|.+|.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 4799999999999999999999999999999999988 899999999999999999999999999999999999999865
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
.++.- . ..+. ++.
T Consensus 86 ~r~e~-------~----------------~~~e--~~~------------------------------------------ 98 (678)
T KOG0127|consen 86 ARSEE-------V----------------EKGE--NKA------------------------------------------ 98 (678)
T ss_pred ccchh-------c----------------cccc--chh------------------------------------------
Confidence 32110 0 0000 000
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
.......
T Consensus 99 ----------------------------------------------------veK~~~q--------------------- 105 (678)
T KOG0127|consen 99 ----------------------------------------------------VEKPIEQ--------------------- 105 (678)
T ss_pred ----------------------------------------------------hhccccc---------------------
Confidence 0000000
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
..... ..+ ..+.-+|+|+|||+.+...+|+.+|
T Consensus 106 ---------------------------~~~~k-----~~v---------------~~~k~rLIIRNLPf~~k~~dLk~vF 138 (678)
T KOG0127|consen 106 ---------------------------KRPTK-----AKV---------------DLPKWRLIIRNLPFKCKKPDLKNVF 138 (678)
T ss_pred ---------------------------CCcch-----hhc---------------cCccceEEeecCCcccCcHHHHHHH
Confidence 00000 000 0012289999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhH
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~ 399 (731)
+.||.|.+|.|++.+ .|+..|||||.|....+|..||..+|+..|.||+|-|.||.++......... ....++.
T Consensus 139 s~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~-----~~~s~Kk 212 (678)
T KOG0127|consen 139 SNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHE-----EKQSLKK 212 (678)
T ss_pred hhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchh-----hhhhhhh
Confidence 999999999999877 5666799999999999999999999999999999999999987553221100 0111111
Q ss_pred HHHHHHHHhhhccCccccccccCChhhHHHHHHHh--cCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcc
Q 037049 400 RREEERKASEASGNTKAWNSLFMRPDTVVENIARK--HGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVS 477 (731)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (731)
...++..+.......... ....+...+.... .+.+.. .. ..+... .....+...
T Consensus 213 ~~~eEed~e~~~d~~~~~----~~Ed~e~d~edeEe~D~~se~---------~e----e~~~~E-------ee~~~vDd~ 268 (678)
T KOG0127|consen 213 AVKEEEDKEADEDDGKDF----DEEDGEEDSEDEEETDGNSEA---------FE----EGEESE-------EEEDDVDDE 268 (678)
T ss_pred ccchhhhccccccccccc----chhcccccccccccccccchh---------hh----cccccc-------ccccccccc
Confidence 110111111000000000 0000000000000 000000 00 000000 000000000
Q ss_pred ----cccccccC---CCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------CCCCEEEEEeCCHHHHH
Q 037049 478 ----SLEEFSAG---KTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLEPVEAA 544 (731)
Q Consensus 478 ----~~~~~~~~---~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~~kg~afV~F~~~e~A~ 544 (731)
.-+..+.. ..+.......+|||+|||+++++++|.++|++||.|.++.|. .++|.|||.|.+..+|+
T Consensus 269 e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~ 348 (678)
T KOG0127|consen 269 ESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQ 348 (678)
T ss_pred cccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHH
Confidence 00000000 001123345899999999999999999999999999988776 47899999999999999
Q ss_pred HHHHhc-----CC-CccCCceEEEEeCCCCccccCC-------CCcCCC--------------CCcccccchh-hHhhhH
Q 037049 545 AAFKGL-----AY-KRYKGVPLYLEWAPSDVLSQSS-------TSKGNQ--------------KNDAVVGEHD-AKRALL 596 (731)
Q Consensus 545 ~Ai~~l-----ng-~~~~gr~l~v~~a~~~~~~~~~-------~~~~~~--------------~~~~~~~~~~-~~~~~~ 596 (731)
.||.+. .| ..+.||.|.|..|-........ .+.+.. +......... ..+..+
T Consensus 349 ~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~ 428 (678)
T KOG0127|consen 349 NCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERI 428 (678)
T ss_pred HHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHH
Confidence 999886 34 6789999999998532211100 000000 0001111000 111112
Q ss_pred HhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccc--cCcccEEE-EEEeeec-CCCCcccccEEEEEeCCH
Q 037049 597 EQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH--IKEGRILS-VKVKKHL-KNGKNVSMGFGFIEFDSV 672 (731)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~--G~~~~I~~-vki~~~~-~~~~~~~kG~afV~F~s~ 672 (731)
...+... ..++.-...-+.|.|+|||..++...|..+.... |.-+.+.. ++.+... .--++.+.||+|+.|...
T Consensus 429 ~~~k~k~--lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~Eh 506 (678)
T KOG0127|consen 429 AERKRKK--LKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEH 506 (678)
T ss_pred HHHHHHh--hcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHH
Confidence 2111110 0111122234459999999999999999988542 11011222 3333322 111345899999999999
Q ss_pred HHHHHHHHHh
Q 037049 673 ETATNVCRDL 682 (731)
Q Consensus 673 e~A~~Ai~~l 682 (731)
+.|.+|++.+
T Consensus 507 Ehalkalk~~ 516 (678)
T KOG0127|consen 507 EHALKALKVL 516 (678)
T ss_pred HHHHHhhhcc
Confidence 9999999976
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.9e-39 Score=366.27 Aligned_cols=280 Identities=24% Similarity=0.344 Sum_probs=239.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
+|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||.|.+.++|.+|++.+|+..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999899999999999999999999999999999999999999975321
Q ss_pred CCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhh
Q 037049 380 SSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459 (731)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~ 459 (731)
..
T Consensus 82 ~~------------------------------------------------------------------------------ 83 (562)
T TIGR01628 82 SL------------------------------------------------------------------------------ 83 (562)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc-----CCCCEEE
Q 037049 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLAL 534 (731)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~-----~~kg~af 534 (731)
.....++|||+|||.++++++|+++|+.||.|..|.+. +++||||
T Consensus 84 ------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~af 133 (562)
T TIGR01628 84 ------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGF 133 (562)
T ss_pred ------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEE
Confidence 01123469999999999999999999999999998876 3689999
Q ss_pred EEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCC
Q 037049 535 VVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVE 614 (731)
Q Consensus 535 V~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (731)
|+|.+.++|..|+..|||..+.|+.|.|.+........ ......
T Consensus 134 V~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~------------------------------------~~~~~~ 177 (562)
T TIGR01628 134 VHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE------------------------------------AAPLKK 177 (562)
T ss_pred EEECCHHHHHHHHHHhcccEecCceEEEeccccccccc------------------------------------cccccC
Confidence 99999999999999999999999999997764322110 001223
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC----Cc
Q 037049 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD----GH 690 (731)
Q Consensus 615 ~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~----Gr 690 (731)
.++|||+|||..+|+++|+++|..||. |.++.|+.+. + +.++|||||.|.+.++|.+|+..|||..|. |+
T Consensus 178 ~~~l~V~nl~~~~tee~L~~~F~~fG~---i~~~~i~~~~-~--g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~ 251 (562)
T TIGR01628 178 FTNLYVKNLDPSVNEDKLRELFAKFGE---ITSAAVMKDG-S--GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGK 251 (562)
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHhcCC---EEEEEEEECC-C--CCcccEEEEEECCHHHHHHHHHHhCCcEecccccce
Confidence 467999999999999999999999999 9999999875 3 348999999999999999999999999999 99
Q ss_pred EEEEEeccCCchhhHHhhh---------ccCCCCceEEEeeccceeee
Q 037049 691 ALILQLCHAKKDEQVVKKA---------EKDKSSTKLLVRNVAFEAQR 729 (731)
Q Consensus 691 ~l~v~~ak~~~~~~~~~~~---------~~~~~~~~~~~~n~~~~~~~ 729 (731)
.|.|.++..+.+.....++ .....+++|+|+||+..+|+
T Consensus 252 ~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~ 299 (562)
T TIGR01628 252 KLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTD 299 (562)
T ss_pred eeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCH
Confidence 9999999887665322221 12447788999999999885
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-39 Score=322.61 Aligned_cols=248 Identities=25% Similarity=0.402 Sum_probs=218.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC-CeEEEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ-GRLLHVM 373 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~-g~~l~V~ 373 (731)
...+|.|||+.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||.|++.+.|+.|++.||+..|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 478899999999999999999999999999999999999999999999999999999999999999999886 9999999
Q ss_pred ecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHH
Q 037049 374 PARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVR 453 (731)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~ 453 (731)
.+..
T Consensus 160 ~Sva---------------------------------------------------------------------------- 163 (506)
T KOG0117|consen 160 VSVA---------------------------------------------------------------------------- 163 (506)
T ss_pred Eeee----------------------------------------------------------------------------
Confidence 8752
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCc-eeEEEcc-----
Q 037049 454 IALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS-LDKVILP----- 527 (731)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~-i~~v~l~----- 527 (731)
+|.|||+|||.+++.++|.+.|++.++ |+.|.|.
T Consensus 164 ----------------------------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d 203 (506)
T KOG0117|consen 164 ----------------------------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD 203 (506)
T ss_pred ----------------------------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc
Confidence 457999999999999999999999985 5566555
Q ss_pred --CCCCEEEEEeCCHHHHHHHHHhcCCC--ccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcC
Q 037049 528 --STKTLALVVFLEPVEAAAAFKGLAYK--RYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGV 603 (731)
Q Consensus 528 --~~kg~afV~F~~~e~A~~Ai~~lng~--~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (731)
+++|||||+|.++..|..|.++|-.- .+-|..+.|.||.......
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d------------------------------- 252 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD------------------------------- 252 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC-------------------------------
Confidence 47899999999999999998887543 4569999999996543111
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC
Q 037049 604 TDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ 683 (731)
Q Consensus 604 ~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln 683 (731)
.+....-..|||+||+..+|++.|+++|.+||. |..|+.++| ||||.|.+.++|.+|++.+|
T Consensus 253 -----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~---veRVkk~rD----------YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 253 -----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK---VERVKKPRD----------YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred -----hhhhhheeeeeeeccchhhhHHHHHHHHHhccc---eEEeecccc----------eeEEeecchHHHHHHHHHhc
Confidence 001223346999999999999999999999999 999998876 59999999999999999999
Q ss_pred CCccCCcEEEEEeccCCchhhHHh
Q 037049 684 GTILDGHALILQLCHAKKDEQVVK 707 (731)
Q Consensus 684 g~~i~Gr~l~v~~ak~~~~~~~~~ 707 (731)
|+.|+|..|.|.|||+..+++...
T Consensus 315 gkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred CceecCceEEEEecCChhhhccch
Confidence 999999999999999998875544
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=318.75 Aligned_cols=241 Identities=29% Similarity=0.431 Sum_probs=212.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccC-CceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLD-TCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~-g~~i~v~~a~~ 78 (731)
|.||||.||.++.|++|..+|.+.|+|.+++||+|+. |.+||||||+|.+.++|++||+.||++.|. |+.|.|+.+.
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv- 162 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV- 162 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee-
Confidence 6799999999999999999999999999999999988 999999999999999999999999999987 8999888543
Q ss_pred CCCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhh
Q 037049 79 VGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQK 158 (731)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (731)
T Consensus 163 -------------------------------------------------------------------------------- 162 (506)
T KOG0117|consen 163 -------------------------------------------------------------------------------- 162 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCC
Q 037049 159 AKVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDD 238 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 238 (731)
T Consensus 163 -------------------------------------------------------------------------------- 162 (506)
T KOG0117|consen 163 -------------------------------------------------------------------------------- 162 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHH
Q 037049 239 GEEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREH 318 (731)
Q Consensus 239 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~ 318 (731)
.+|+|||+|||.++++++|.+.
T Consensus 163 ----------------------------------------------------------an~RLFiG~IPK~k~keeIlee 184 (506)
T KOG0117|consen 163 ----------------------------------------------------------ANCRLFIGNIPKTKKKEEILEE 184 (506)
T ss_pred ----------------------------------------------------------ecceeEeccCCccccHHHHHHH
Confidence 2358999999999999999999
Q ss_pred HhcCCC-eeEEEEeeeCCC-CCceeEEEEEecCHHHHHHHHHHcCC--cccCCeEEEEEecCCCCCCchhhcccccccCC
Q 037049 319 FSKFGN-VSEVHIVVDKDT-KRSKGIAYVLYAIPESASRAIEVLDN--SIFQGRLLHVMPARHKKSSDKQELHNSTSQGT 394 (731)
Q Consensus 319 F~~~G~-i~~i~i~~d~~~-g~~~g~afV~F~~~e~A~~Al~~l~~--~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~ 394 (731)
|++.++ |.+|.|..++.+ .++||||||+|.++..|..|-+.|-. ..++|..+.|.||.+...+...
T Consensus 185 ~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded---------- 254 (506)
T KOG0117|consen 185 MKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED---------- 254 (506)
T ss_pred HHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh----------
Confidence 999874 778888776543 37899999999999999999988864 5667999999999986542100
Q ss_pred chhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCC
Q 037049 395 KTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGV 474 (731)
Q Consensus 395 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 474 (731)
T Consensus 255 -------------------------------------------------------------------------------- 254 (506)
T KOG0117|consen 255 -------------------------------------------------------------------------------- 254 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCc
Q 037049 475 NVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKR 554 (731)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~ 554 (731)
.-..-..|||+||+.++|++.|+.+|..||.|.+|+.+ +-||||+|.+.++|.+||+.+||+.
T Consensus 255 ---------------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 255 ---------------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred ---------------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCce
Confidence 01113479999999999999999999999999999887 4599999999999999999999999
Q ss_pred cCCceEEEEeCCC
Q 037049 555 YKGVPLYLEWAPS 567 (731)
Q Consensus 555 ~~gr~l~v~~a~~ 567 (731)
+.|..|.|.+|..
T Consensus 318 ldG~~iEvtLAKP 330 (506)
T KOG0117|consen 318 LDGSPIEVTLAKP 330 (506)
T ss_pred ecCceEEEEecCC
Confidence 9999999999953
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.2e-38 Score=345.24 Aligned_cols=302 Identities=23% Similarity=0.304 Sum_probs=232.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLD-TCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~-g~~i~v~~a~~~ 79 (731)
|+|||+|||++++|++|+++|++||.|.+|+|++|..|+++|||||+|.+.++|++||+.||+..+. |+.|.|..+.
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-- 136 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-- 136 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--
Confidence 6899999999999999999999999999999999966999999999999999999999999998775 5554443111
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
..++|||+|||.++++++|.++|
T Consensus 137 ---------------------------------------------------------~~~rLFVgNLP~~~TeeeL~eeF 159 (578)
T TIGR01648 137 ---------------------------------------------------------DNCRLFVGGIPKNKKREEILEEF 159 (578)
T ss_pred ---------------------------------------------------------cCceeEeecCCcchhhHHHHHHh
Confidence 12489999999999999999999
Q ss_pred hcCCC-eeEEEEe-eeCCCCCceeEEEEEecCHHHHHHHHHHcCC--cccCCeEEEEEecCCCCCCchhhcccccccCCc
Q 037049 320 SKFGN-VSEVHIV-VDKDTKRSKGIAYVLYAIPESASRAIEVLDN--SIFQGRLLHVMPARHKKSSDKQELHNSTSQGTK 395 (731)
Q Consensus 320 ~~~G~-i~~i~i~-~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~ 395 (731)
+.++. +..+.++ .....++++|||||+|.+.++|..|+..|+. ..+.|+.|.|.|+.+......
T Consensus 160 skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~------------ 227 (578)
T TIGR01648 160 SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE------------ 227 (578)
T ss_pred hcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc------------
Confidence 99863 4444443 2233567899999999999999999988864 457899999999975432000
Q ss_pred hhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCC
Q 037049 396 TLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVN 475 (731)
Q Consensus 396 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 475 (731)
.
T Consensus 228 -----~-------------------------------------------------------------------------- 228 (578)
T TIGR01648 228 -----D-------------------------------------------------------------------------- 228 (578)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhccc--CceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCC
Q 037049 476 VSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKF--GSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYK 553 (731)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~--G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~ 553 (731)
.....++|||+|||..+++++|+++|+.| |.|.+|.+. ++||||+|.+.++|.+|+..|||.
T Consensus 229 --------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 229 --------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred --------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCC
Confidence 11124589999999999999999999999 999998775 689999999999999999999999
Q ss_pred ccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHH
Q 037049 554 RYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLR 633 (731)
Q Consensus 554 ~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~ 633 (731)
.|.|+.|.|.|+....-..... ... . ........ .. ....-.........++++.|+++.++++-+.
T Consensus 293 ~i~Gr~I~V~~Akp~~~~~~~~---~~r-g-~gg~~~~~-~~-------~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~ 359 (578)
T TIGR01648 293 ELEGSEIEVTLAKPVDKKSYVR---YTR-G-TGGRGKER-QA-------ARQSLGQVYDPASRSLAYEDYYYHPPYAPSL 359 (578)
T ss_pred EECCEEEEEEEccCCCcccccc---ccc-c-cCCCcccc-cc-------cccccCcccCccccccccccccccccccchh
Confidence 9999999999995422110000 000 0 00000000 00 0000111233456789999999999999999
Q ss_pred HHhccccC
Q 037049 634 KHFGEHIK 641 (731)
Q Consensus 634 ~~F~~~G~ 641 (731)
++|..+|.
T Consensus 360 ~~f~~~g~ 367 (578)
T TIGR01648 360 HFPRMPGP 367 (578)
T ss_pred hccccCcc
Confidence 99999987
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.5e-37 Score=343.56 Aligned_cols=318 Identities=19% Similarity=0.173 Sum_probs=228.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc--CCcccCCeEEEEEec
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL--DNSIFQGRLLHVMPA 375 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l--~~~~~~g~~l~V~~a 375 (731)
+++|||+|||+.+++++|+++|+.||.|.+|.|+. ++|||||+|.+.++|..|+..+ ++..+.|+.|.|.|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 56999999999999999999999999999999985 3579999999999999999864 788999999999999
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
..+....... . .
T Consensus 76 ~~~~~~~~~~---------------~-----------~------------------------------------------ 87 (481)
T TIGR01649 76 TSQEIKRDGN---------------S-----------D------------------------------------------ 87 (481)
T ss_pred CCcccccCCC---------------C-----------c------------------------------------------
Confidence 7543210000 0 0
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCC--CEE
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK--TLA 533 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~k--g~a 533 (731)
+. ........+|+|.||++.+++++|+++|+.||.|.+|.+.+.+ ++|
T Consensus 88 -----------------------~~-------~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~a 137 (481)
T TIGR01649 88 -----------------------FD-------SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQA 137 (481)
T ss_pred -----------------------cc-------CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEE
Confidence 00 0011123479999999999999999999999999999887654 599
Q ss_pred EEEeCCHHHHHHHHHhcCCCccCC--ceEEEEeCCCCcccc-C--CCCcCCCCCcccccchhhH-------hhh------
Q 037049 534 LVVFLEPVEAAAAFKGLAYKRYKG--VPLYLEWAPSDVLSQ-S--STSKGNQKNDAVVGEHDAK-------RAL------ 595 (731)
Q Consensus 534 fV~F~~~e~A~~Ai~~lng~~~~g--r~l~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~-------~~~------ 595 (731)
||+|.+.++|.+|+..|||..|.| +.|.|.|+......- . ....+.....-.......+ ...
T Consensus 138 fVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (481)
T TIGR01649 138 LVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHP 217 (481)
T ss_pred EEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCC
Confidence 999999999999999999999864 589999986422110 0 0000000000000000000 000
Q ss_pred -------HH------------hhhhc-----------CCCCC--------CCCCCCCCCeEEEeCCCC-CCCHHHHHHHh
Q 037049 596 -------LE------------QQLEG-----------VTDAD--------IDPDRVESRSLFVKNLNF-KTCDENLRKHF 636 (731)
Q Consensus 596 -------~~------------~~~~~-----------~~~~~--------~~~~~~~~~~L~V~NLp~-~~tee~L~~~F 636 (731)
+. ..+.. ..... ......++++|||+|||. .+|+++|+++|
T Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF 297 (481)
T TIGR01649 218 SSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLF 297 (481)
T ss_pred ccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 00 00000 00000 001134677899999997 69999999999
Q ss_pred ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchhhHH----------
Q 037049 637 GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQVV---------- 706 (731)
Q Consensus 637 ~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~~~~---------- 706 (731)
+.||. |.+|+|+++ .+|||||+|.+.++|..||..|||..|.|++|+|.+++.+......
T Consensus 298 ~~yG~---V~~vki~~~-------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR01649 298 CVYGN---VERVKFMKN-------KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTS 367 (481)
T ss_pred HhcCC---eEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcc
Confidence 99999 999999986 4799999999999999999999999999999999999765321000
Q ss_pred -h-------hh---c--c-----CCCCceEEEeeccceeee
Q 037049 707 -K-------KA---E--K-----DKSSTKLLVRNVAFEAQR 729 (731)
Q Consensus 707 -~-------~~---~--~-----~~~~~~~~~~n~~~~~~~ 729 (731)
+ .+ . . .-++.+|+|+|||+.+|+
T Consensus 368 ~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~te 408 (481)
T TIGR01649 368 YKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSE 408 (481)
T ss_pred cccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCH
Confidence 0 00 0 0 125678999999999885
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=9.2e-37 Score=334.69 Aligned_cols=265 Identities=25% Similarity=0.383 Sum_probs=218.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC-CeEEEEEecC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ-GRLLHVMPAR 376 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~-g~~l~V~~a~ 376 (731)
.++|||+|||+++++++|+.+|+.||.|.+|+|++| .+|+++|||||+|.+.++|.+||+.||+..+. |+.|.|.++.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 468999999999999999999999999999999999 59999999999999999999999999998885 6766665432
Q ss_pred CCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHh
Q 037049 377 HKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIAL 456 (731)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~ 456 (731)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCc-eeEEEcc-------C
Q 037049 457 GETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGS-LDKVILP-------S 528 (731)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~-i~~v~l~-------~ 528 (731)
..++|||+|||..+++++|.++|++++. +..+.+. +
T Consensus 137 ------------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgK 180 (578)
T TIGR01648 137 ------------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKK 180 (578)
T ss_pred ------------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCc
Confidence 1347999999999999999999999964 4444442 3
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCC--CccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCC
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAY--KRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDA 606 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng--~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (731)
++|||||+|.++++|..|+..|+. ..+.|+.|.|.|+.......
T Consensus 181 nRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---------------------------------- 226 (578)
T TIGR01648 181 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---------------------------------- 226 (578)
T ss_pred cCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc----------------------------------
Confidence 579999999999999999998864 35789999999996432100
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccc--cCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCC
Q 037049 607 DIDPDRVESRSLFVKNLNFKTCDENLRKHFGEH--IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG 684 (731)
Q Consensus 607 ~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~--G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng 684 (731)
........+|||+|||..+|+++|+++|+.| |. |..|+++ +|||||+|.+.++|.+|++.|||
T Consensus 227 --~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~---I~rV~~~----------rgfAFVeF~s~e~A~kAi~~lnG 291 (578)
T TIGR01648 227 --EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK---VERVKKI----------RDYAFVHFEDREDAVKAMDELNG 291 (578)
T ss_pred --ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc---eEEEEee----------cCeEEEEeCCHHHHHHHHHHhCC
Confidence 0012234689999999999999999999999 88 9988765 45899999999999999999999
Q ss_pred CccCCcEEEEEeccCCchhhHHh--------------hh-----ccCCCCceEEEeeccceee
Q 037049 685 TILDGHALILQLCHAKKDEQVVK--------------KA-----EKDKSSTKLLVRNVAFEAQ 728 (731)
Q Consensus 685 ~~i~Gr~l~v~~ak~~~~~~~~~--------------~~-----~~~~~~~~~~~~n~~~~~~ 728 (731)
..|.|+.|.|+||++....+-.. +. ...-.+..|.+.|++|.++
T Consensus 292 ~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~ 354 (578)
T TIGR01648 292 KELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPP 354 (578)
T ss_pred CEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCcccccccccccccccc
Confidence 99999999999999876541100 00 0222567888999999865
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.5e-37 Score=315.02 Aligned_cols=335 Identities=25% Similarity=0.464 Sum_probs=244.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
.||||++||++++.++|.++|+.+|+|..+.++.+..++.++|||||.|...+|+++|+...++..|.|+.|.|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 59999999999999999999999999999999999988899999999999999999999999999999999999999876
Q ss_pred CCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhh
Q 037049 379 KSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGE 458 (731)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~ 458 (731)
..+....... +....... .+
T Consensus 86 ~r~e~~~~~e-----~~~veK~~-----~q-------------------------------------------------- 105 (678)
T KOG0127|consen 86 ARSEEVEKGE-----NKAVEKPI-----EQ-------------------------------------------------- 105 (678)
T ss_pred ccchhccccc-----chhhhccc-----cc--------------------------------------------------
Confidence 5432111000 00000000 00
Q ss_pred hHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCC-----CCEE
Q 037049 459 TQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST-----KTLA 533 (731)
Q Consensus 459 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~-----kg~a 533 (731)
....- .....+...|+|+|||+.+...+|..+|+.||.|..|.|++. .|||
T Consensus 106 -------------~~~~k-----------~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFa 161 (678)
T KOG0127|consen 106 -------------KRPTK-----------AKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFA 161 (678)
T ss_pred -------------CCcch-----------hhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceE
Confidence 00000 001112568999999999999999999999999999999952 3899
Q ss_pred EEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC-CCccccCCCCcC-----CC--------CCc-------------ccc
Q 037049 534 LVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP-SDVLSQSSTSKG-----NQ--------KND-------------AVV 586 (731)
Q Consensus 534 fV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~-~~~~~~~~~~~~-----~~--------~~~-------------~~~ 586 (731)
||.|....+|..|+..+||..|.||+|-|.||- .+.|...+.... .. ..+ ...
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ed 241 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSED 241 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccc
Confidence 999999999999999999999999999999994 444433221000 00 000 000
Q ss_pred cchhhH-----h---hh--HHhhhhcCCCCC------------CCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCccc
Q 037049 587 GEHDAK-----R---AL--LEQQLEGVTDAD------------IDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644 (731)
Q Consensus 587 ~~~~~~-----~---~~--~~~~~~~~~~~~------------~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~ 644 (731)
...... . .+ ..+.+......+ ..++...+.+|||+||||.+|+++|..+|+.||+
T Consensus 242 eEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~--- 318 (678)
T KOG0127|consen 242 EEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE--- 318 (678)
T ss_pred cccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc---
Confidence 000000 0 00 000000000000 1223334588999999999999999999999999
Q ss_pred EEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC-----C-CccCCcEEEEEeccCCchhhHH---hhhccCCCC
Q 037049 645 ILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ-----G-TILDGHALILQLCHAKKDEQVV---KKAEKDKSS 715 (731)
Q Consensus 645 I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln-----g-~~i~Gr~l~v~~ak~~~~~~~~---~~~~~~~~~ 715 (731)
|.++.|+.++.++. ++|.|||.|.+..+|.+||.... | ..|+||.|.|.+|-.+.+.+.. +++++...+
T Consensus 319 v~ya~iV~~k~T~~--skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gk 396 (678)
T KOG0127|consen 319 VKYAIIVKDKDTGH--SKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGK 396 (678)
T ss_pred ceeEEEEeccCCCC--cccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCc
Confidence 99999999987765 99999999999999999999772 4 8899999999999988876443 334455566
Q ss_pred ceEEEee
Q 037049 716 TKLLVRN 722 (731)
Q Consensus 716 ~~~~~~n 722 (731)
..||+-|
T Consensus 397 rNLyLa~ 403 (678)
T KOG0127|consen 397 RNLYLAR 403 (678)
T ss_pred cceeeec
Confidence 6777755
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.4e-37 Score=286.84 Aligned_cols=303 Identities=27% Similarity=0.398 Sum_probs=228.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
|+|.|.-||..+|+++|+.+|+..|.|.+|+++||+. |.+.||+||.|..+++|++||..|||..+-.+.|+|.+|+|-
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 5789999999999999999999999999999999998 999999999999999999999999999999999999999862
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
.+
T Consensus 122 s~------------------------------------------------------------------------------ 123 (360)
T KOG0145|consen 122 SD------------------------------------------------------------------------------ 123 (360)
T ss_pred hh------------------------------------------------------------------------------
Confidence 10
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 124 -------------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 124 -------------------------------------------------------------------------------- 123 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
......|||.+||..+|..+|..+|
T Consensus 124 -------------------------------------------------------~Ik~aNLYvSGlPktMtqkelE~iF 148 (360)
T KOG0145|consen 124 -------------------------------------------------------SIKDANLYVSGLPKTMTQKELEQIF 148 (360)
T ss_pred -------------------------------------------------------hhcccceEEecCCccchHHHHHHHH
Confidence 0011269999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEecCCCCCCchhhcccccccCCchh
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPARHKKSSDKQELHNSTSQGTKTL 397 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~ 397 (731)
++||.|..-+|..|.-+|.++|.|||.|....+|+.||..|||..-.| .+|.|.++.......... .
T Consensus 149 s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a----------~- 217 (360)
T KOG0145|consen 149 SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQA----------L- 217 (360)
T ss_pred HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchh----------h-
Confidence 999999999999999999999999999999999999999999988877 489999997542210000 0
Q ss_pred hHHHHHHHHHhhhccCccccccccCChh----hHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcC
Q 037049 398 KQRREEERKASEASGNTKAWNSLFMRPD----TVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAG 473 (731)
Q Consensus 398 k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 473 (731)
...+|.++. ....+...... + +......+..... ..
T Consensus 218 -------------------ls~ly~sp~rr~~Gp~hh~~~r~r-----~-~~~~~~~~~~~rf---------------sP 257 (360)
T KOG0145|consen 218 -------------------LSQLYQSPARRYGGPMHHQAQRFR-----L-DNLLNPHAAQARF---------------SP 257 (360)
T ss_pred -------------------hHHhhcCccccCCCcccchhhhhc-----c-ccccchhhhhccC---------------CC
Confidence 000000000 00000000000 0 0000000000000 00
Q ss_pred CCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHH
Q 037049 474 VNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAF 547 (731)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai 547 (731)
+.............++......+|||.||..++++.-|+++|.+||.|..|++.+ .||||||.+.+-++|..||
T Consensus 258 ~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 258 MTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred ccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHH
Confidence 0001111111111222445578999999999999999999999999999998874 6899999999999999999
Q ss_pred HhcCCCccCCceEEEEeCCC
Q 037049 548 KGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 548 ~~lng~~~~gr~l~v~~a~~ 567 (731)
..|||+.+++|.|.|.|-..
T Consensus 338 ~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 338 ASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred HHhcCccccceEEEEEEecC
Confidence 99999999999999998643
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=281.70 Aligned_cols=289 Identities=25% Similarity=0.363 Sum_probs=225.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
....|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.|||||.|.+++||++|+..|||..+..+.|+|.||+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHh
Q 037049 377 HKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIAL 456 (731)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~ 456 (731)
|...
T Consensus 120 PSs~---------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 120 PSSD---------------------------------------------------------------------------- 123 (360)
T ss_pred CChh----------------------------------------------------------------------------
Confidence 7532
Q ss_pred hhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------CCC
Q 037049 457 GETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STK 530 (731)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~~k 530 (731)
......|||.+||..+|..+|..+|++||.|..-+|. -++
T Consensus 124 ----------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~sr 169 (360)
T KOG0145|consen 124 ----------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSR 169 (360)
T ss_pred ----------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceec
Confidence 1113369999999999999999999999998754443 378
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCccCC--ceEEEEeCCCCccccCCCCc--CCCC-Ccccccc------hhhHhhhH---
Q 037049 531 TLALVVFLEPVEAAAAFKGLAYKRYKG--VPLYLEWAPSDVLSQSSTSK--GNQK-NDAVVGE------HDAKRALL--- 596 (731)
Q Consensus 531 g~afV~F~~~e~A~~Ai~~lng~~~~g--r~l~v~~a~~~~~~~~~~~~--~~~~-~~~~~~~------~~~~~~~~--- 596 (731)
|.|||.|+...+|..||..|||..-.| -+|.|.||..-.......+. -+.+ +....+. .-++....
T Consensus 170 GVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~ 249 (360)
T KOG0145|consen 170 GVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPH 249 (360)
T ss_pred ceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchh
Confidence 999999999999999999999987665 46999998422111100000 0000 0000000 00000000
Q ss_pred ----------HhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEE
Q 037049 597 ----------EQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666 (731)
Q Consensus 597 ----------~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~af 666 (731)
.+.+..............+.+|||.||..+++|.-|..+|.+||- |..|+|++|+.+++ .|||||
T Consensus 250 ~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGA---v~nVKvirD~ttnk--CKGfgF 324 (360)
T KOG0145|consen 250 AAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGA---VTNVKVIRDFTTNK--CKGFGF 324 (360)
T ss_pred hhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccc---eeeEEEEecCCccc--ccceeE
Confidence 001111111112223445788999999999999999999999999 99999999997666 799999
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCC
Q 037049 667 IEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700 (731)
Q Consensus 667 V~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~ 700 (731)
|.+.+-++|..||..|||+.+++|.|.|+|.-.+
T Consensus 325 VtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 325 VTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999999997654
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.3e-35 Score=322.40 Aligned_cols=177 Identities=21% Similarity=0.356 Sum_probs=152.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
|+|||+|||+.+++++|+++|..||.|.+|+|++|+. |+++|||||+|.+.++|++||+.|||..++|+.|+|.+....
T Consensus 108 ~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~ 187 (612)
T TIGR01645 108 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 187 (612)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccc
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999999999843211
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
+.. .. . .
T Consensus 188 -----p~a----~~---------------------------------------------~----------~--------- 194 (612)
T TIGR01645 188 -----PQA----QP---------------------------------------------I----------I--------- 194 (612)
T ss_pred -----ccc----cc---------------------------------------------c----------c---------
Confidence 000 00 0 0
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
+++.
T Consensus 195 --------------------------------------------------~~~~-------------------------- 198 (612)
T TIGR01645 195 --------------------------------------------------DMVQ-------------------------- 198 (612)
T ss_pred --------------------------------------------------cccc--------------------------
Confidence 0000
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
......++|||+|||..+++++|+++|
T Consensus 199 -----------------------------------------------------~~~~~~~rLfVgnLp~~vteedLk~lF 225 (612)
T TIGR01645 199 -----------------------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVF 225 (612)
T ss_pred -----------------------------------------------------ccccccceEEeecCCCCCCHHHHHHHH
Confidence 001123489999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
+.||.|.+++|.+|+.+|+++|||||.|.+.++|..|+..||+..|+|+.|+|.++....
T Consensus 226 s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 226 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999889999999999999999999999999999999999999998643
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=8.6e-35 Score=324.63 Aligned_cols=349 Identities=19% Similarity=0.278 Sum_probs=225.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
+|||+|||..+++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|.+||. |+|..+.|++|.|..+....
T Consensus 91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~ 169 (457)
T TIGR01622 91 TVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEK 169 (457)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhh
Confidence 699999999999999999999999999999999987 9999999999999999999997 99999999999998654210
Q ss_pred CCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhc
Q 037049 81 DPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK 160 (731)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (731)
...
T Consensus 170 ~~~----------------------------------------------------------------------------- 172 (457)
T TIGR01622 170 NRA----------------------------------------------------------------------------- 172 (457)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCc
Q 037049 161 VSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 240 (731)
......
T Consensus 173 -----------------------------------------------------~~~~~~--------------------- 178 (457)
T TIGR01622 173 -----------------------------------------------------AKAATH--------------------- 178 (457)
T ss_pred -----------------------------------------------------hhcccc---------------------
Confidence 000000
Q ss_pred cccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 037049 241 EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320 (731)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 320 (731)
. .+. ....++|||+|||..+++++|+.+|+
T Consensus 179 -------------------------------~--~~~-----------------~p~~~~l~v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 179 -------------------------------Q--PGD-----------------IPNFLKLYVGNLHFNITEQELRQIFE 208 (457)
T ss_pred -------------------------------c--CCC-----------------CCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 0 000 11145899999999999999999999
Q ss_pred cCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHH
Q 037049 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQR 400 (731)
Q Consensus 321 ~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~ 400 (731)
.||.|..|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+............. . ..
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~----~----~~- 279 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTF----E----DI- 279 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhh----c----cc-
Confidence 99999999999999888999999999999999999999999999999999999987332211000000 0 00
Q ss_pred HHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCccccc
Q 037049 401 REEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLE 480 (731)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 480 (731)
. .. ....... ...........+...... ............+.-...................... ....
T Consensus 280 ~-----~~--~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 348 (457)
T TIGR01622 280 D-----KQ--QQMGKNL--NTEEREQLMEKLDRDDGD-GGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL-AIMA 348 (457)
T ss_pred c-----cc--ccCCcCC--CccchHHHHHhhccCCCC-ccccCCCccchhhhhcccccccccccccccccccccc-cccc
Confidence 0 00 0000000 000000000000000000 0000000000000000000000000000000000000 0000
Q ss_pred ccccCCCCCCcCCCcEEEEeCCCCCCC----------HHHHHHHhcccCceeEEEcc--CCCCEEEEEeCCHHHHHHHHH
Q 037049 481 EFSAGKTDGLKRSNHVFLVKNLPYDSS----------EGELAKMFGKFGSLDKVILP--STKTLALVVFLEPVEAAAAFK 548 (731)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~V~NLp~~~t----------e~~L~~~F~~~G~i~~v~l~--~~kg~afV~F~~~e~A~~Ai~ 548 (731)
............+.++|+|.||....+ .++|++.|++||.|..|.+. ...|++||+|.++++|.+|+.
T Consensus 349 ~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~ 428 (457)
T TIGR01622 349 RNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQ 428 (457)
T ss_pred CCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHH
Confidence 000000111235678999999965543 36899999999999999886 467999999999999999999
Q ss_pred hcCCCccCCceEEEEeCCCCcccc
Q 037049 549 GLAYKRYKGVPLYLEWAPSDVLSQ 572 (731)
Q Consensus 549 ~lng~~~~gr~l~v~~a~~~~~~~ 572 (731)
.|||..|+|+.|.+.+.+...|..
T Consensus 429 ~lnGr~f~gr~i~~~~~~~~~~~~ 452 (457)
T TIGR01622 429 ALNGRYFGGKMITAAFVVNDVYDM 452 (457)
T ss_pred HhcCcccCCeEEEEEEEcHHHHHh
Confidence 999999999999999998765443
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=296.52 Aligned_cols=88 Identities=24% Similarity=0.355 Sum_probs=80.6
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC
Q 037049 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688 (731)
Q Consensus 609 ~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~ 688 (731)
..+...+.+|||.+||-+.-+.+|-..|..||. |++.++..++.+| ++++|+||.|++..+|..||..|||+.|+
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~---Vlsakvfidk~tn--lskcfgfvSyen~~sa~~aI~amngfQig 492 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGG---VLSAKVFIDKVTN--LSKCFGFVSYENAQSAQNAISAMNGFQIG 492 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccc---eeEEEEEEecccC--HhhhcCcccccchhhhHHHHHHhcchhhc
Confidence 336678888999999999999999999999999 9999999998664 59999999999999999999999999999
Q ss_pred CcEEEEEeccCCc
Q 037049 689 GHALILQLCHAKK 701 (731)
Q Consensus 689 Gr~l~v~~ak~~~ 701 (731)
+++|+|.+...+-
T Consensus 493 ~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 493 SKRLKVQLKRDRN 505 (510)
T ss_pred cccceEEeeeccC
Confidence 9999999976553
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=7.2e-34 Score=317.22 Aligned_cols=298 Identities=21% Similarity=0.331 Sum_probs=219.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|+|+.|+.+|.++|||||+|.+.++|.+|| .|+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 445679999999999999999999999999999999999989999999999999999999999 6999999999999987
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
+......... . ..
T Consensus 165 ~~~~~~~~~~----------------~----------~~----------------------------------------- 177 (457)
T TIGR01622 165 SQAEKNRAAK----------------A----------AT----------------------------------------- 177 (457)
T ss_pred cchhhhhhhh----------------c----------cc-----------------------------------------
Confidence 6532110000 0 00
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------C
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------S 528 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~ 528 (731)
. ........++|||+|||..+++++|+++|++||.|..|.+. +
T Consensus 178 ------------------~-------------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~ 226 (457)
T TIGR01622 178 ------------------H-------------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR 226 (457)
T ss_pred ------------------c-------------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc
Confidence 0 00011225789999999999999999999999999999887 4
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCc--CCC-----CCcccccchhhHhhh------
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSK--GNQ-----KNDAVVGEHDAKRAL------ 595 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~------ 595 (731)
++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+............ ... ...........+...
T Consensus 227 ~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (457)
T TIGR01622 227 SKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDG 306 (457)
T ss_pred cceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCC
Confidence 5789999999999999999999999999999999998632211100000 000 000000000000000
Q ss_pred --------------------HHhhhhc--------------CCCC--CCCCCCCCCCeEEEeCCCCCCC----------H
Q 037049 596 --------------------LEQQLEG--------------VTDA--DIDPDRVESRSLFVKNLNFKTC----------D 629 (731)
Q Consensus 596 --------------------~~~~~~~--------------~~~~--~~~~~~~~~~~L~V~NLp~~~t----------e 629 (731)
....+.. .... .......++.+|+|.||....+ .
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~ 386 (457)
T TIGR01622 307 DGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEIL 386 (457)
T ss_pred CccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHH
Confidence 0000000 0000 0000234567899999966554 3
Q ss_pred HHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCC
Q 037049 630 ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700 (731)
Q Consensus 630 e~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~ 700 (731)
++|++.|.+||. |+.|.|.... ..|++||+|.+.++|.+|++.|||+.|+|+.|.+.|....
T Consensus 387 ~dv~~e~~k~G~---v~~v~v~~~~------~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 387 DDVKEECSKYGG---VVHIYVDTKN------SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCC---eeEEEEeCCC------CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 678899999998 9999998543 6799999999999999999999999999999999998543
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=7.9e-35 Score=309.68 Aligned_cols=305 Identities=23% Similarity=0.337 Sum_probs=217.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
+....|+|+|||..+..++|..+|..||.|..|.++ + .| --|+|.|.++.+|..|+..|.+..+...++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC--c-cc---ceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 344589999999999999999999999999998443 3 23 24999999999999999999999999999988887
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
....-...... ....... .+. +..+...........+....+.+.....+
T Consensus 457 P~dvf~~~pka--------~~~~~e~---------------~~~-------~ee~~~Er~s~~d~~v~eD~d~te~ss~a 506 (725)
T KOG0110|consen 457 PEDVFTEDPKA--------DDLSAES---------------RSK-------MEENPSERVSAEDGQVEEDKDPTEESSLA 506 (725)
T ss_pred hhhhccCCccc--------ccccccc---------------ccc-------cccCcceecccccccccccCCccccccch
Confidence 64322100000 0000000 000 00000000000000000000000000000
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC-------
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------- 528 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------- 528 (731)
.........+.|||+||++.++.++|..+|..+|.|..+.|..
T Consensus 507 ------------------------------~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k 556 (725)
T KOG0110|consen 507 ------------------------------RVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANK 556 (725)
T ss_pred ------------------------------hhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccc
Confidence 0000122233499999999999999999999999999987763
Q ss_pred --CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCC
Q 037049 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDA 606 (731)
Q Consensus 529 --~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (731)
+.|||||+|.+.++|+.|++.|+|+.++|+.|.|.++.... .. . ..
T Consensus 557 ~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~----~~---~------------~g------------- 604 (725)
T KOG0110|consen 557 YLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP----AS---T------------VG------------- 604 (725)
T ss_pred ccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc----cc---c------------cc-------------
Confidence 34999999999999999999999999999999999997111 00 0 00
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 607 DIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 607 ~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
........++.|+|+||||.++..+|+.+|..||. |.+|+|+.. .+++-++|||||.|-++.+|.+|+..|.++|
T Consensus 605 K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq---lksvRlPKK--~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH 679 (725)
T KOG0110|consen 605 KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ---LKSVRLPKK--IGKGAHRGFGFVDFLTPREAKNAFDALGSTH 679 (725)
T ss_pred cccccccccceeeeeccchHHHHHHHHHHHhcccc---eeeeccchh--hcchhhccceeeeccCcHHHHHHHHhhcccc
Confidence 00001223567999999999999999999999999 999999998 4566689999999999999999999999999
Q ss_pred cCCcEEEEEeccCCchh
Q 037049 687 LDGHALILQLCHAKKDE 703 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~~~ 703 (731)
|+||+|.+.||+...--
T Consensus 680 lyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 680 LYGRRLVLEWAKSDNTM 696 (725)
T ss_pred eechhhheehhccchHH
Confidence 99999999999887643
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6.8e-33 Score=313.82 Aligned_cols=192 Identities=22% Similarity=0.338 Sum_probs=147.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
..+|||+|||+.+++++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 45899999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred CCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhh
Q 037049 378 KKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALG 457 (731)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~ 457 (731)
........... ...++... .. .+
T Consensus 375 ~~~~~~~~~~~----~~~~~~~~----------------------------------------------~~------~~- 397 (509)
T TIGR01642 375 GANQATIDTSN----GMAPVTLL----------------------------------------------AK------AL- 397 (509)
T ss_pred CCCCCCccccc----cccccccc----------------------------------------------cc------cc-
Confidence 42211000000 00000000 00 00
Q ss_pred hhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCC----------CHHHHHHHhcccCceeEEEcc
Q 037049 458 ETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDS----------SEGELAKMFGKFGSLDKVILP 527 (731)
Q Consensus 458 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~----------te~~L~~~F~~~G~i~~v~l~ 527 (731)
.... + .....+..+|+|.||+... ..++|+++|++||.|..|.|+
T Consensus 398 ------------~~~~-----~--------~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 398 ------------SQSI-----L--------QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ------------hhhh-----c--------cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 0000 0 0023356789999996421 236899999999999999987
Q ss_pred CC---------CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccc
Q 037049 528 ST---------KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLS 571 (731)
Q Consensus 528 ~~---------kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 571 (731)
+. .|+|||+|.+.++|.+|+..|||..|.|+.|.|.|.+...|.
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence 43 489999999999999999999999999999999999875543
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2e-32 Score=309.97 Aligned_cols=305 Identities=18% Similarity=0.271 Sum_probs=211.0
Q ss_pred hhcccCCCCeEEEeCCCCCCCHHHHHHHHhcC------------CCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHH
Q 037049 291 VQQEVLESGRLFVRNLPYTATEDELREHFSKF------------GNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358 (731)
Q Consensus 291 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~------------G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~ 358 (731)
.+......++|||+|||+.+|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..||
T Consensus 168 ~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al- 240 (509)
T TIGR01642 168 QQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM- 240 (509)
T ss_pred CccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-
Confidence 34456677899999999999999999999975 23444433 446799999999999999999
Q ss_pred HcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCC
Q 037049 359 VLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVS 438 (731)
Q Consensus 359 ~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (731)
.|+|..|.|+.|.|................ .. . .
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~---------~~-~---------------------~--------------- 274 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEV---------SQ-K---------------------N--------------- 274 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCC---------CC-C---------------------C---------------
Confidence 799999999999997554221100000000 00 0 0
Q ss_pred cccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhccc
Q 037049 439 KSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKF 518 (731)
Q Consensus 439 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~ 518 (731)
... ....... ...........++|||+|||..+++++|+++|+.|
T Consensus 275 ------~~~---------------------------~~~~~~~--~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 275 ------PDD---------------------------NAKNVEK--LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred ------Ccc---------------------------ccccccc--ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 000 0000000 00000023346789999999999999999999999
Q ss_pred CceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhH
Q 037049 519 GSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAK 592 (731)
Q Consensus 519 G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (731)
|.|..+.|.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.+|............... .. ....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~---~~---~~~~ 393 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM---AP---VTLL 393 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc---cc---cccc
Confidence 9999887753 6799999999999999999999999999999999999643211111100000 00 0000
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCC----------CHHHHHHHhccccCcccEEEEEEeeec-CCCCccc
Q 037049 593 RALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKT----------CDENLRKHFGEHIKEGRILSVKVKKHL-KNGKNVS 661 (731)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~----------tee~L~~~F~~~G~~~~I~~vki~~~~-~~~~~~~ 661 (731)
.......+ ......++.+|+|.||.+.. ..++|+++|+.||. |..|+|+++. ....+.+
T Consensus 394 ~~~~~~~~-------~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~---v~~v~i~~~~~~~~~~~~ 463 (509)
T TIGR01642 394 AKALSQSI-------LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP---LINIVIPRPNGDRNSTPG 463 (509)
T ss_pred cccchhhh-------ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC---eeEEEeeccCcCCCcCCC
Confidence 00000000 00123467789999997532 23689999999999 9999999864 2222346
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 037049 662 MGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699 (731)
Q Consensus 662 kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~ 699 (731)
.|+|||+|.+.++|.+|+..|||+.|.|+.|.|.|...
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 89999999999999999999999999999999999753
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-32 Score=260.12 Aligned_cols=176 Identities=24% Similarity=0.348 Sum_probs=154.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
-+||+.|...++-++|++.|.+||+|.+++|++|..|++++|||||.|...++|++||..|||.-|++|.|+-.||..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhh
Q 037049 380 SSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459 (731)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~ 459 (731)
..... ....+. . +..
T Consensus 144 ~e~n~--------~~ltfd--e-------------------------V~N------------------------------ 158 (321)
T KOG0148|consen 144 SEMNG--------KPLTFD--E-------------------------VYN------------------------------ 158 (321)
T ss_pred cccCC--------CCccHH--H-------------------------Hhc------------------------------
Confidence 10000 000000 0 000
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCC
Q 037049 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLE 539 (731)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~ 539 (731)
...+.+|+|||+|++.-+++++|++.|++||.|..|++.+.+||+||.|.+
T Consensus 159 -----------------------------Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~t 209 (321)
T KOG0148|consen 159 -----------------------------QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFET 209 (321)
T ss_pred -----------------------------cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecc
Confidence 035568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCceEEEEeCCCCc
Q 037049 540 PVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 540 ~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 569 (731)
.|.|..||-.|||..+.|..++|.|.....
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999999999997643
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.9e-31 Score=252.33 Aligned_cols=173 Identities=18% Similarity=0.302 Sum_probs=150.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCC
Q 037049 495 HVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568 (731)
Q Consensus 495 ~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~ 568 (731)
-.+||..|...++.++|++.|.+||.|..++++ ++||||||.|-+.++|..||..|||..+++|.|+-.||.++
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 368999999999999999999999999988887 48999999999999999999999999999999999999776
Q ss_pred ccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEE
Q 037049 569 VLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSV 648 (731)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~v 648 (731)
....-. .....+++... .....++|||.||+..+||+.|++.|+.||. |..|
T Consensus 143 p~e~n~-----------------~~ltfdeV~NQ--------ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~---I~EV 194 (321)
T KOG0148|consen 143 PSEMNG-----------------KPLTFDEVYNQ--------SSPDNTSVYVGNIASGLTEDLMRQTFSPFGP---IQEV 194 (321)
T ss_pred ccccCC-----------------CCccHHHHhcc--------CCCCCceEEeCCcCccccHHHHHHhcccCCc---ceEE
Confidence 511110 11123333333 3456788999999999999999999999999 9999
Q ss_pred EEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchh
Q 037049 649 KVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703 (731)
Q Consensus 649 ki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~ 703 (731)
+|.++ +||+||.|.+.|+|..||..|||..|+|+.++|.|.|...+-
T Consensus 195 RvFk~--------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 195 RVFKD--------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred EEecc--------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99985 789999999999999999999999999999999999987754
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=274.71 Aligned_cols=266 Identities=25% Similarity=0.378 Sum_probs=230.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
.|||+ +++|+..|.++|+.+|+|.+|+|++|. + +.|||||.|.++++|.+||+.+|...+.|++|+|.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 68998 889999999999999999999999998 6 99999999999999999999999999999999999987321
Q ss_pred CCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhh
Q 037049 380 SSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459 (731)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~ 459 (731)
T Consensus 77 -------------------------------------------------------------------------------- 76 (369)
T KOG0123|consen 77 -------------------------------------------------------------------------------- 76 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC----CCCEEEE
Q 037049 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS----TKTLALV 535 (731)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~----~kg~afV 535 (731)
..|||+||+..++...|.++|+.||.|++|++.. ++|| ||
T Consensus 77 -----------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV 120 (369)
T KOG0123|consen 77 -----------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FV 120 (369)
T ss_pred -----------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EE
Confidence 1299999999999999999999999999998874 6889 99
Q ss_pred EeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCC
Q 037049 536 VFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVES 615 (731)
Q Consensus 536 ~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (731)
+|.+.+.|.+|+..|||..+.|+.|+|.....+.++..... .....-
T Consensus 121 ~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~---------------------------------~~~~~~ 167 (369)
T KOG0123|consen 121 QFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLG---------------------------------EYKKRF 167 (369)
T ss_pred EeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccccc---------------------------------chhhhh
Confidence 99999999999999999999999999999976554332210 011233
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~ 695 (731)
++++|+|++..+++..|..+|..+|. |.++.++.+. .+ .++|||||.|.+.++|..|+..||+..+.|+.+.|.
T Consensus 168 t~v~vk~~~~~~~~~~l~~~f~~~g~---i~s~~v~~~~-~g--~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~ 241 (369)
T KOG0123|consen 168 TNVYVKNLEEDSTDEELKDLFSAYGS---ITSVAVMRDS-IG--KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVG 241 (369)
T ss_pred hhhheeccccccchHHHHHhhcccCc---ceEEEEeecC-CC--CCCCccceeecChhHHHHHHHhccCCcCCccceeec
Confidence 56999999999999999999999999 9999999986 33 389999999999999999999999999999999999
Q ss_pred eccCCchhhHHhhh---------ccCCCCceEEEeeccce
Q 037049 696 LCHAKKDEQVVKKA---------EKDKSSTKLLVRNVAFE 726 (731)
Q Consensus 696 ~ak~~~~~~~~~~~---------~~~~~~~~~~~~n~~~~ 726 (731)
-+..+.+.....++ ...-+.+.|||+|++=.
T Consensus 242 ~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~ 281 (369)
T KOG0123|consen 242 RAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDET 281 (369)
T ss_pred ccccchhhHHHHhhhhHhhhhhccccccccccccccCccc
Confidence 99886655433332 12448899999997643
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.5e-28 Score=257.81 Aligned_cols=167 Identities=32% Similarity=0.518 Sum_probs=151.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
|+|||+|||+++|+++|+++|+.||.|.+|+|++|+. ++++|||||+|.+.++|++||..|||..+.+++|+|.++++.
T Consensus 108 ~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~ 187 (346)
T TIGR01659 108 TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPG 187 (346)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccc
Confidence 5899999999999999999999999999999999987 999999999999999999999999999999999999977631
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
..
T Consensus 188 ~~------------------------------------------------------------------------------ 189 (346)
T TIGR01659 188 GE------------------------------------------------------------------------------ 189 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T TIGR01659 190 -------------------------------------------------------------------------------- 189 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
.....+|||+|||..+++++|+++|
T Consensus 190 -------------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F 214 (346)
T TIGR01659 190 -------------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIF 214 (346)
T ss_pred -------------------------------------------------------ccccceeEEeCCCCcccHHHHHHHH
Confidence 0011279999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEecCCCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPARHKKS 380 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a~~~~~ 380 (731)
+.||.|..++|+++..+++++|||||+|.+.++|.+||+.||+..+.| +.|.|.++.....
T Consensus 215 ~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 215 GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999999899999999999999999999999999998876 7899999986543
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=8.4e-28 Score=235.60 Aligned_cols=177 Identities=22% Similarity=0.376 Sum_probs=152.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
||||||.|.+.+.|+.|+..|..||+|.+|.+..|+- ++++|||||+|+-++.|+.|++.|||..++||.|+|....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs-- 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS-- 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC--
Confidence 7999999999999999999999999999999999998 9999999999999999999999999999999999998221
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
++|.. | | .|..
T Consensus 192 ---NmpQA------------------------------------------Q-------p--------------iID~--- 202 (544)
T KOG0124|consen 192 ---NMPQA------------------------------------------Q-------P--------------IIDM--- 202 (544)
T ss_pred ---CCccc------------------------------------------c-------h--------------HHHH---
Confidence 11110 0 0 0000
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
+.
T Consensus 203 ----------------------------------------------------vq-------------------------- 204 (544)
T KOG0124|consen 203 ----------------------------------------------------VQ-------------------------- 204 (544)
T ss_pred ----------------------------------------------------HH--------------------------
Confidence 00
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
.+.....+|||..+.++.+++||+..|
T Consensus 205 -----------------------------------------------------eeAk~fnRiYVaSvHpDLSe~DiKSVF 231 (544)
T KOG0124|consen 205 -----------------------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVF 231 (544)
T ss_pred -----------------------------------------------------HHHHhhheEEeeecCCCccHHHHHHHH
Confidence 002223489999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
+.||+|..|.+-+++..+.++||||++|.+..+...|+..||-+.++|+.|+|..+....
T Consensus 232 EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 232 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 999999999999999888899999999999999999999999999999999999877543
No 29
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=228.77 Aligned_cols=327 Identities=20% Similarity=0.197 Sum_probs=207.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC-C-eEEEEEecCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ-G-RLLHVMPARH 377 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~-g-~~l~V~~a~~ 377 (731)
+++|.++-+.++-+-|+.+|++||.|..|.-.... ..-.|+|+|.+.+.|..|...|+|..|. | ..|+|.++.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 78899999999999999999999999888655332 2336999999999999999999997775 3 6788888764
Q ss_pred CCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhh---HHH-HHHHhcCCCccccc-CcccchHHH
Q 037049 378 KKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDT---VVE-NIARKHGVSKSDLL-DREANDLAV 452 (731)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~~-~~~~~~~a~ 452 (731)
... +..+.+.+ + .-+...+...+. ... .+....+ +.+... .+...+...
T Consensus 228 t~L-------------nvKynndk---------S---RDyTnp~LP~gd~~p~l~~~~~aa~~-~~~~~~g~p~aip~~~ 281 (492)
T KOG1190|consen 228 TDL-------------NVKYNNDK---------S---RDYTNPDLPVGDGQPSLDQLMAAAFG-SVPAVHGAPLAIPSGA 281 (492)
T ss_pred ccc-------------eeeccccc---------c---ccccCCCCCCCccccccchhhhcccc-ccccccCCcccCCccc
Confidence 221 11111111 0 000001111110 000 0000000 000000 000000000
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCC-CCCCHHHHHHHhcccCceeEEEccCCC-
Q 037049 453 RIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLP-YDSSEGELAKMFGKFGSLDKVILPSTK- 530 (731)
Q Consensus 453 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp-~~~te~~L~~~F~~~G~i~~v~l~~~k- 530 (731)
..+ .+.. .... .....++|.|.||. +.+|.+-|..+|.-||.|.+|+|...+
T Consensus 282 ~~a----------------~~a~-~~~~---------~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk 335 (492)
T KOG1190|consen 282 AGA----------------NAAD-GKIE---------SPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK 335 (492)
T ss_pred hhh----------------cccc-cccc---------cCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC
Confidence 000 0000 0000 01125788899885 458999999999999999999998655
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCC--CCcccccchhhHhhhHHhhhhcCCCCCC
Q 037049 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQ--KNDAVVGEHDAKRALLEQQLEGVTDADI 608 (731)
Q Consensus 531 g~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (731)
--|+|+|.+..+|+.|+..|+|..+.|+.|+|.+.......-+.+....+ ..++....-.+.+.... .+
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgs---------KN 406 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGS---------KN 406 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCccc---------cc
Confidence 48999999999999999999999999999999999643332222211110 01111100111111110 12
Q ss_pred CCC-CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 609 DPD-RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 609 ~~~-~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
..+ ..++.+|++.|+|..++|++|+.+|..-|. .......... .+-+|++.+.+.++|..|+..+|++.+
T Consensus 407 ~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~---~vkafkff~k------d~kmal~q~~sveeA~~ali~~hnh~l 477 (492)
T KOG1190|consen 407 YQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGG---QVKAFKFFQK------DRKMALPQLESVEEAIQALIDLHNHYL 477 (492)
T ss_pred ccccCCchhheeeccCCcccchhHHHHhhhcCCc---eEEeeeecCC------CcceeecccCChhHhhhhccccccccC
Confidence 222 356678999999999999999999999887 5444433322 567899999999999999999999999
Q ss_pred CC-cEEEEEeccCC
Q 037049 688 DG-HALILQLCHAK 700 (731)
Q Consensus 688 ~G-r~l~v~~ak~~ 700 (731)
++ +.|+|+|+|..
T Consensus 478 gen~hlRvSFSks~ 491 (492)
T KOG1190|consen 478 GENHHLRVSFSKST 491 (492)
T ss_pred CCCceEEEEeeccc
Confidence 55 49999999864
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=7.8e-27 Score=244.92 Aligned_cols=167 Identities=22% Similarity=0.360 Sum_probs=147.9
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEE
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLE 563 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~ 563 (731)
.....++|||+|||.++++++|+++|+.||.|..|+|.. ++|||||+|.++++|.+|+..|||..+.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 445678999999999999999999999999999998863 56899999999999999999999999999999999
Q ss_pred eCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcc
Q 037049 564 WAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEG 643 (731)
Q Consensus 564 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~ 643 (731)
|+.... .....++|||.|||..+|+++|+++|+.||.
T Consensus 183 ~a~p~~-----------------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~-- 219 (346)
T TIGR01659 183 YARPGG-----------------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ-- 219 (346)
T ss_pred cccccc-----------------------------------------cccccceeEEeCCCCcccHHHHHHHHHhcCC--
Confidence 985311 0112357999999999999999999999999
Q ss_pred cEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEeccCCch
Q 037049 644 RILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG--HALILQLCHAKKD 702 (731)
Q Consensus 644 ~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G--r~l~v~~ak~~~~ 702 (731)
|..++|+.+..+++ ++|||||+|.+.++|.+||+.||+..|.| ++|.|.||+....
T Consensus 220 -V~~v~i~~d~~tg~--~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 220 -IVQKNILRDKLTGT--PRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred -EEEEEEeecCCCCc--cceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999876655 89999999999999999999999999976 7999999987654
No 31
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=4.6e-26 Score=228.47 Aligned_cols=238 Identities=18% Similarity=0.204 Sum_probs=191.6
Q ss_pred EEEeCCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCCC
Q 037049 3 ICVKNLPKYVTEDRLRDFFS-QKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGD 81 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~~ 81 (731)
+||.|||+++.+.+|+++|. +.|.|..|.++.|..|++||||.|+|+++|.+++|++.||.+.+.||.|.|.......+
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~ 126 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQR 126 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhh
Confidence 89999999999999999997 56999999999999999999999999999999999999999999999999873321100
Q ss_pred CCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhcc
Q 037049 82 PNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKV 161 (731)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (731)
.
T Consensus 127 ~------------------------------------------------------------------------------- 127 (608)
T KOG4212|consen 127 D------------------------------------------------------------------------------- 127 (608)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCcc
Q 037049 162 SENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGEE 241 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e 241 (731)
+..
T Consensus 128 -----------------------------------------------------~~~------------------------ 130 (608)
T KOG4212|consen 128 -----------------------------------------------------QYG------------------------ 130 (608)
T ss_pred -----------------------------------------------------hhh------------------------
Confidence 000
Q ss_pred ccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHhc
Q 037049 242 EEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321 (731)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 321 (731)
...+...+.|++++.+.+-...|...|.-
T Consensus 131 ---------------------------------------------------~~~r~g~~~f~~~~~~q~G~~~l~~~g~g 159 (608)
T KOG4212|consen 131 ---------------------------------------------------RIVRDGGGGFGGGGGVQGGNGGLNGGGGG 159 (608)
T ss_pred ---------------------------------------------------heeeccCcccccCcceecccccccccCCC
Confidence 00344558999999999999999999988
Q ss_pred CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHHH
Q 037049 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRR 401 (731)
Q Consensus 322 ~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~ 401 (731)
-|.+..-.+.+|. ++.+++..++.|...-.+..++..++.....-+.+++ +
T Consensus 160 gG~~~Rg~~~~D~-Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f--------------------------- 210 (608)
T KOG4212|consen 160 GGDRDRGFSRRDD-DRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-F--------------------------- 210 (608)
T ss_pred CccccCCCCcccc-cccccccCccccccccccchhhhcccchhhhhhhccC-C---------------------------
Confidence 8877777777777 7889999999999888888887555443333333332 1
Q ss_pred HHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccc
Q 037049 402 EEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEE 481 (731)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 481 (731)
T Consensus 211 -------------------------------------------------------------------------------- 210 (608)
T KOG4212|consen 211 -------------------------------------------------------------------------------- 210 (608)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc-----CCCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 037049 482 FSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKTLALVVFLEPVEAAAAFKGLAYKRYK 556 (731)
Q Consensus 482 ~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~-----~~kg~afV~F~~~e~A~~Ai~~lng~~~~ 556 (731)
.++....+||.||.+.+..+.|++.|.-.|.|..|.+. .++|++.++|.++-.|..||..+++.-+.
T Consensus 211 --------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 211 --------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred --------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 12223468999999999999999999999999887543 47899999999999999999999987777
Q ss_pred CceEEEEe
Q 037049 557 GVPLYLEW 564 (731)
Q Consensus 557 gr~l~v~~ 564 (731)
.+++.+..
T Consensus 283 ~~~~~~Rl 290 (608)
T KOG4212|consen 283 DRRMTVRL 290 (608)
T ss_pred cccceeec
Confidence 77766655
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.9e-25 Score=245.67 Aligned_cols=175 Identities=14% Similarity=0.274 Sum_probs=147.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 492 RSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 492 ~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
...++|||+|||+.+++++|+++|.+||.|.+|.+. +++|||||+|.+.++|.+|+..|||..|.||.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 346789999999999999999999999999999886 36899999999999999999999999999999999864
Q ss_pred CCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccE
Q 037049 566 PSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI 645 (731)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I 645 (731)
....... . . .+.. .......++|||+|||..+++++|+++|+.||. |
T Consensus 185 ~~~p~a~--~-------------~-------~~~~--------~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~---I 231 (612)
T TIGR01645 185 SNMPQAQ--P-------------I-------IDMV--------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE---I 231 (612)
T ss_pred ccccccc--c-------------c-------cccc--------cccccccceEEeecCCCCCCHHHHHHHHhhcCC---e
Confidence 3211000 0 0 0000 001223468999999999999999999999999 9
Q ss_pred EEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 646 LSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 646 ~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
.+++|+++..+++ +||||||.|.+.++|.+||..|||+.|+|+.|+|.+|....
T Consensus 232 ~svrl~~D~~tgk--sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 232 VKCQLARAPTGRG--HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred eEEEEEecCCCCC--cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9999999875544 89999999999999999999999999999999999997643
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=1.1e-25 Score=234.24 Aligned_cols=336 Identities=21% Similarity=0.327 Sum_probs=219.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCCC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGD 81 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~~ 81 (731)
+|+-.|+..++.-+|.++|+.+|+|.+|.|+.|+. ++++|.|||+|.+.+....||. |.|..+.|.+|.|....-..
T Consensus 182 vf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEaek- 259 (549)
T KOG0147|consen 182 VFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEK- 259 (549)
T ss_pred HHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHHH-
Confidence 45566788899999999999999999999999999 9999999999999999999996 99999999999998543100
Q ss_pred CCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhcc
Q 037049 82 PNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKV 161 (731)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (731)
+. .+.+.|.
T Consensus 260 ---------nr----------------------------------------~a~~s~a---------------------- 268 (549)
T KOG0147|consen 260 ---------NR----------------------------------------AANASPA---------------------- 268 (549)
T ss_pred ---------HH----------------------------------------HHhcccc----------------------
Confidence 00 0000000
Q ss_pred ccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCcc
Q 037049 162 SENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGEE 241 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e 241 (731)
+
T Consensus 269 --------------------------------------------------~----------------------------- 269 (549)
T KOG0147|consen 269 --------------------------------------------------L----------------------------- 269 (549)
T ss_pred --------------------------------------------------c-----------------------------
Confidence 0
Q ss_pred ccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHhc
Q 037049 242 EEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321 (731)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 321 (731)
+|... ..+..+|||+||..++++++|+.+|+.
T Consensus 270 ---------------------------------~~k~~---------------~~p~~rl~vgnLHfNite~~lr~ifep 301 (549)
T KOG0147|consen 270 ---------------------------------QGKGF---------------TGPMRRLYVGNLHFNITEDMLRGIFEP 301 (549)
T ss_pred ---------------------------------ccccc---------------ccchhhhhhcccccCchHHHHhhhccC
Confidence 00000 112224999999999999999999999
Q ss_pred CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHHH
Q 037049 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRR 401 (731)
Q Consensus 322 ~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~ 401 (731)
||.|..|.+++|..+|.++|||||+|.+.++|.+|+..|||..+-|+.|+|.....+-........ ....
T Consensus 302 fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~--------~~d~-- 371 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVT--------QFDF-- 371 (549)
T ss_pred cccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccccccc--------cccc--
Confidence 999999999999989999999999999999999999999999999999999876654332111000 0000
Q ss_pred HHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccc
Q 037049 402 EEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEE 481 (731)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 481 (731)
+.. ..........+-.-....++...+.+ +.............+... .+..-+..+....+
T Consensus 372 -D~~-------d~~gl~~~~~g~~Ql~~kla~~~~~~---~~s~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~p 432 (549)
T KOG0147|consen 372 -DED-------DRQGLSLGSGGRNQLMAKLAEGKGRS---LPSTAISALLLLAKLASA--------AQFNGVVRVRSVDP 432 (549)
T ss_pred -chh-------hccccccccccHHHHHHHHhccCCcc---ccchhhhHHHhccccchH--------HhhcCCcCccccCc
Confidence 000 00000000000000000111111111 000000000000000000 00000000000000
Q ss_pred cccCCCCCCcCCCcEEEEeCCCCCCC----------HHHHHHHhcccCceeEEEccCCC-CEEEEEeCCHHHHHHHHHhc
Q 037049 482 FSAGKTDGLKRSNHVFLVKNLPYDSS----------EGELAKMFGKFGSLDKVILPSTK-TLALVVFLEPVEAAAAFKGL 550 (731)
Q Consensus 482 ~~~~~~~~~~~~~~~l~V~NLp~~~t----------e~~L~~~F~~~G~i~~v~l~~~k-g~afV~F~~~e~A~~Ai~~l 550 (731)
. ...+....+..|+.++||-...+ .++|.+.+.+||.|..|.+.+.. |+.||.|.+.+.|..|+.+|
T Consensus 433 ~--~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 433 A--DASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKAL 510 (549)
T ss_pred c--ccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHH
Confidence 0 00011225566888999843322 26889999999999999998754 99999999999999999999
Q ss_pred CCCccCCceEEEEeCCCCc
Q 037049 551 AYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 551 ng~~~~gr~l~v~~a~~~~ 569 (731)
||..|.|+.|...|-+...
T Consensus 511 hgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 511 HGRWFAGRMITAKYLPLER 529 (549)
T ss_pred hhhhhccceeEEEEeehhh
Confidence 9999999999999987543
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.6e-24 Score=211.25 Aligned_cols=171 Identities=22% Similarity=0.356 Sum_probs=145.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
.-.|+|||+.+.+...++.|+..|..||+|.+|.+.+|+.|++++|||||+|.-+|.|+-|++.|||..++||.|.|...
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
. ..+ ..+.. +..+
T Consensus 191 s--Nmp---------------QAQpi--------------------------ID~v------------------------ 203 (544)
T KOG0124|consen 191 S--NMP---------------QAQPI--------------------------IDMV------------------------ 203 (544)
T ss_pred C--CCc---------------ccchH--------------------------HHHH------------------------
Confidence 2 111 00000 0000
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------C
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------T 529 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~ 529 (731)
.. .....+.|||..+..+.+++||+..|+-||.|.+|.+.+ .
T Consensus 204 ------qe--------------------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 204 ------QE--------------------------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred ------HH--------------------------HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 00 122345799999999999999999999999999999874 5
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 530 kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
+||||++|.+..+...||..||-..++|..|+|..+
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 899999999999999999999999999999999875
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=9.2e-24 Score=219.96 Aligned_cols=297 Identities=24% Similarity=0.343 Sum_probs=212.6
Q ss_pred cccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 293 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
.+..+.+++|+-.|+...+..+|.+||+.+|.|..|+++.|+.+++++|.|||+|.+.+....|| .|.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 34667789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHH
Q 037049 373 MPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAV 452 (731)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~ 452 (731)
+.....+.. . .... .
T Consensus 253 q~sEaeknr-------------------~------a~~s----~------------------------------------ 267 (549)
T KOG0147|consen 253 QLSEAEKNR-------------------A------ANAS----P------------------------------------ 267 (549)
T ss_pred cccHHHHHH-------------------H------Hhcc----c------------------------------------
Confidence 976532110 0 0000 0
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC----
Q 037049 453 RIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS---- 528 (731)
Q Consensus 453 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~---- 528 (731)
++.. .+...+...|||+||-.++++++|+.+|++||.|..|.+..
T Consensus 268 ---------------a~~~----------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t 316 (549)
T KOG0147|consen 268 ---------------ALQG----------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET 316 (549)
T ss_pred ---------------cccc----------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccc
Confidence 0000 00112222399999999999999999999999999998763
Q ss_pred --CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcc---------cccchhhHhhhHH
Q 037049 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDA---------VVGEHDAKRALLE 597 (731)
Q Consensus 529 --~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 597 (731)
++|||||+|.+.++|.+|+..|||..+-|+.|.|.......-......... .-+. ..+ ...+....-
T Consensus 317 G~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~-d~D~~d~~gl~~~~~g-~~Ql~~kla 394 (549)
T KOG0147|consen 317 GRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQF-DFDEDDRQGLSLGSGG-RNQLMAKLA 394 (549)
T ss_pred ccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccccccccc-ccchhhcccccccccc-HHHHHHHHh
Confidence 689999999999999999999999999999999987654332221100000 0000 000 000000000
Q ss_pred hhh------------------------hc-C------CCCCCCCCCCCCCeEEEeCCCCCCC----------HHHHHHHh
Q 037049 598 QQL------------------------EG-V------TDADIDPDRVESRSLFVKNLNFKTC----------DENLRKHF 636 (731)
Q Consensus 598 ~~~------------------------~~-~------~~~~~~~~~~~~~~L~V~NLp~~~t----------ee~L~~~F 636 (731)
... .. . .....+....++.+|.++|+-...| .+++.+-+
T Consensus 395 ~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec 474 (549)
T KOG0147|consen 395 EGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEEC 474 (549)
T ss_pred ccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHH
Confidence 000 00 0 0000111225667799999854332 25666666
Q ss_pred ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 037049 637 GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698 (731)
Q Consensus 637 ~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak 698 (731)
.+||+ |..|.|-++ +-|+.||.|.+.+.|..|+..|||+++.||.|...|-.
T Consensus 475 ~k~g~---v~hi~vd~n-------s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 475 GKHGK---VCHIFVDKN-------SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HhcCC---eeEEEEccC-------CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 66766 877766654 45999999999999999999999999999999998853
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=3e-23 Score=186.09 Aligned_cols=167 Identities=29% Similarity=0.384 Sum_probs=149.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
+|||+||+..++++-|.++|-+.|+|.+++|++|+- ...+|||||+|.+.++|+-||+.||...+.|++|+|..+....
T Consensus 11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~ 90 (203)
T KOG0131|consen 11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQ 90 (203)
T ss_pred eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccc
Confidence 699999999999999999999999999999999988 7799999999999999999999999999999999999654100
Q ss_pred CCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhc
Q 037049 81 DPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK 160 (731)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (731)
T Consensus 91 -------------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 91 -------------------------------------------------------------------------------- 90 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCc
Q 037049 161 VSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 240 (731)
T Consensus 91 -------------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 91 -------------------------------------------------------------------------------- 90 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 037049 241 EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320 (731)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 320 (731)
.. ..-+.+|||+||.+.+++..|...|+
T Consensus 91 ------------------------------------~n----------------l~vganlfvgNLd~~vDe~~L~dtFs 118 (203)
T KOG0131|consen 91 ------------------------------------KN----------------LDVGANLFVGNLDPEVDEKLLYDTFS 118 (203)
T ss_pred ------------------------------------cc----------------ccccccccccccCcchhHHHHHHHHH
Confidence 00 01112799999999999999999999
Q ss_pred cCCCeeE-EEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCC
Q 037049 321 KFGNVSE-VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380 (731)
Q Consensus 321 ~~G~i~~-i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~ 380 (731)
.||.+.. -.+++++.+|.++|||||.|.+.+.+.+|+..+||+.+.++++.|.++..+..
T Consensus 119 afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 119 AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 9998654 47899998999999999999999999999999999999999999999986543
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=8.9e-23 Score=183.04 Aligned_cols=167 Identities=22% Similarity=0.325 Sum_probs=147.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 492 RSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 492 ~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
....+|||+||+..++++-|+++|-+.|+|..+++++ .+|||||+|.+.++|..|++-||...+.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3457999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred CCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccE
Q 037049 566 PSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI 645 (731)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I 645 (731)
.... . +..-+.+|||+||.+.+++.-|.+.|+.||. +
T Consensus 87 s~~~-----~-----------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~---l 123 (203)
T KOG0131|consen 87 SAHQ-----K-----------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGV---L 123 (203)
T ss_pred cccc-----c-----------------------------------cccccccccccccCcchhHHHHHHHHHhccc---c
Confidence 6211 0 1223357999999999999999999999998 5
Q ss_pred EE-EEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchh
Q 037049 646 LS-VKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703 (731)
Q Consensus 646 ~~-vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~ 703 (731)
++ =+|+++..+|. ++|||||.|.+.+.+.+|+..|||..++.++|.|++|+.+...
T Consensus 124 ~~~P~i~rd~~tg~--~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 124 ISPPKIMRDPDTGN--PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccCCcccccccCCC--CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 55 38888876555 8999999999999999999999999999999999999887654
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.9e-23 Score=206.21 Aligned_cols=163 Identities=31% Similarity=0.503 Sum_probs=142.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCC-cccCC--eEEEEE
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN-SIFQG--RLLHVM 373 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~-~~~~g--~~l~V~ 373 (731)
+.-+|||+.||..++|.||+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..||. +.|.| ..|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 345899999999999999999999999999999999999999999999999999999999999987 45555 688888
Q ss_pred ecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHH
Q 037049 374 PARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVR 453 (731)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~ 453 (731)
+|.....
T Consensus 113 ~Ad~E~e------------------------------------------------------------------------- 119 (510)
T KOG0144|consen 113 YADGERE------------------------------------------------------------------------- 119 (510)
T ss_pred ccchhhh-------------------------------------------------------------------------
Confidence 8874321
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC-----
Q 037049 454 IALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS----- 528 (731)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~----- 528 (731)
.....+.|||+-|+..+++.+|+++|++||.|+.+.|.+
T Consensus 120 ------------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~ 163 (510)
T KOG0144|consen 120 ------------------------------------RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGL 163 (510)
T ss_pred ------------------------------------ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccc
Confidence 111234699999999999999999999999999998885
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCc-cCC--ceEEEEeCCCC
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAYKR-YKG--VPLYLEWAPSD 568 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng~~-~~g--r~l~v~~a~~~ 568 (731)
++|||||.|.+.+.|..||+.|||.. +.| .+|.|.||...
T Consensus 164 sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 164 SRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 79999999999999999999999975 655 57999999643
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=6e-21 Score=196.40 Aligned_cols=348 Identities=16% Similarity=0.155 Sum_probs=185.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSE-VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
..|-+++||+.||+++|.+||+..--|.. |.++.++ .+++.|-|||+|.+.+.|++|| .-|...|..|.|.|-.+..
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeehhHH
Confidence 37999999999999999999998743333 5566776 6789999999999999999999 6678888999999987763
Q ss_pred CCCCchhhcccccccCCchhhHHHHHHHHHhhhccC----ccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHH
Q 037049 378 KKSSDKQELHNSTSQGTKTLKQRREEERKASEASGN----TKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVR 453 (731)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~ 453 (731)
.................-++.... ......+ ...|.... ..+ .......+.+.......... .
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~-----a~Rg~~d~~~~~~~~~~~~-r~g---~~~~g~~g~~~~~~~~d~~~----~ 248 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPG-----APRGGYDYGQGRDPGRNAT-RYG---AGGEGYYGFSRYPSLQDYGN----F 248 (510)
T ss_pred HHHHhhccccccccCCCCcccccc-----CCccccccccccCCCcccc-ccc---cccCCccccccCcccccccc----c
Confidence 322111100000000000000000 0000000 00000000 000 00000000000000000000 0
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCccc-ccccc-cCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc----
Q 037049 454 IALGETQVIAETKKALTNAGVNVSS-LEEFS-AGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP---- 527 (731)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~---- 527 (731)
.+. ... .......+. .+... ..-..........++.++||+..+..+|.++|+..-++ .|+|.
T Consensus 249 gs~-----~~~-----~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~d 317 (510)
T KOG4211|consen 249 GSY-----GGG-----RDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPD 317 (510)
T ss_pred ccc-----ccc-----cccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCC
Confidence 000 000 000000000 00000 00001112233789999999999999999999987766 55554
Q ss_pred -CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCC-------CCcc---cccchhhHhhhH
Q 037049 528 -STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQ-------KNDA---VVGEHDAKRALL 596 (731)
Q Consensus 528 -~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~ 596 (731)
+..|-|+|+|.++++|..|+.+ ++..++.+.|.+..-...--....-+.... .+.. ..+ ........
T Consensus 318 Gr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g-~~~gG~~g 395 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASG-SYGGGGNG 395 (510)
T ss_pred CccCCcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCcccc-ccccCCCC
Confidence 4678999999999999999976 788888888776543210000000000000 0000 000 00000000
Q ss_pred -----------Hhhh---hcC---CCCC-CCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCC
Q 037049 597 -----------EQQL---EGV---TDAD-IDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGK 658 (731)
Q Consensus 597 -----------~~~~---~~~---~~~~-~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~ 658 (731)
.+.. ... ...+ .........+|..+.+|+..++.++.++|..+++ -.|.+.+++ +
T Consensus 396 ~~~~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~~----a~~~~~yd~---~ 468 (510)
T KOG4211|consen 396 GGGRGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIRP----AQVELLYDH---Q 468 (510)
T ss_pred CccccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccCc----ccccccccc---c
Confidence 0000 000 0000 0012223456889999999999999999999985 678888876 3
Q ss_pred cccccEEEEEeCCHHHHHHHHHH
Q 037049 659 NVSMGFGFIEFDSVETATNVCRD 681 (731)
Q Consensus 659 ~~~kG~afV~F~s~e~A~~Ai~~ 681 (731)
.+.-|-|-|-|.+.++++.|++.
T Consensus 469 ~~~~~~a~~~~~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 469 FQRSGDARVIFYNRKDYQDALMK 491 (510)
T ss_pred ccccCceeEEEechhhhHHHHHh
Confidence 33577899999999999999875
No 40
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=3.6e-19 Score=176.07 Aligned_cols=346 Identities=18% Similarity=0.121 Sum_probs=209.7
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC-C-eEEEEEecCCCCC
Q 037049 303 VRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ-G-RLLHVMPARHKKS 380 (731)
Q Consensus 303 v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~-g-~~l~V~~a~~~~~ 380 (731)
|-|--+.+|.+-|..+....|.|..|.|++. +| -.|.|+|.+.+.|++|...|||..|. | .+|+|+||++.+.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4565677899999999999999999988764 33 47999999999999999999997664 4 7999999998654
Q ss_pred CchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCccccc----CcccchHHHHHHh
Q 037049 381 SDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLL----DREANDLAVRIAL 456 (731)
Q Consensus 381 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~a~~~~~ 456 (731)
.-.......+.-......... .....-+..+..+ +....-....+...+.+. .......+.+
T Consensus 202 nV~knd~DtwDyTlp~~~~~~----------~~g~~~~~r~~~p-~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r--- 267 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPY----------DPGRNHYDRQRQP-APLGYHPSSRGGGHSGYYSGDRHGPPHPPPSR--- 267 (494)
T ss_pred eeeecCCccccccCCCCCCCC----------CCCCCCCccccCC-CccCCChhhcCCCCCCCcccccCCCCCCCCCC---
Confidence 221111000000000000000 0000000000000 000000000000000000 0000000000
Q ss_pred hhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCC-CCHHHHHHHhcccCceeEEEccCCC-CEEE
Q 037049 457 GETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYD-SSEGELAKMFGKFGSLDKVILPSTK-TLAL 534 (731)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~-~te~~L~~~F~~~G~i~~v~l~~~k-g~af 534 (731)
.......+. ....++...++++++|.+|.-. ...+.|.++|..||.|.+|++++.+ |.|+
T Consensus 268 -----------------~~~~~~~~~-g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtam 329 (494)
T KOG1456|consen 268 -----------------YRDGYRDGR-GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAM 329 (494)
T ss_pred -----------------CccccccCC-CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeE
Confidence 000000000 0011235567899999999865 5789999999999999999999765 7999
Q ss_pred EEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCC----CCCcccccchhhHhhhHHhhhhcCCCCCCCC
Q 037049 535 VVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGN----QKNDAVVGEHDAKRALLEQQLEGVTDADIDP 610 (731)
Q Consensus 535 V~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (731)
|++.+....++|+..||+..+.|.+|.|.+..+...... ++... .+-++... ....+-+... ......
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~-~pflLpDgSpSfKdys~-SkNnRFssp~------qAsKNr 401 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPV-QPFLLPDGSPSFKDYSG-SKNNRFSSPE------QASKNR 401 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccccccccC-CceecCCCCcchhhccc-ccccccCChh------Hhhccc
Confidence 999999999999999999999999999999987665544 22111 11110000 0000000000 001122
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...++++|+..|.|..+||+.|.++|...+.. .++++|..-+ +.+ .-.|+++|.+.++|..||..+|...|.+.
T Consensus 402 Iq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~--~~svkvFp~k-ser---SssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 402 IQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP--PTSVKVFPLK-SER---SSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred ccCCcceeEEecCCCccCHHHHHHHhhhcCCC--cceEEeeccc-ccc---cccceeeeehHHHHHHHHHHhccccccCC
Confidence 45578889999999999999999999887752 5667777654 222 23489999999999999999999999654
Q ss_pred ------EEEEEeccC
Q 037049 691 ------ALILQLCHA 699 (731)
Q Consensus 691 ------~l~v~~ak~ 699 (731)
.|++.|+-+
T Consensus 476 ~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 476 NGSFPFILKLCFSTS 490 (494)
T ss_pred CCCCCeeeeeeeccc
Confidence 355555543
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=1.8e-21 Score=186.72 Aligned_cols=149 Identities=32% Similarity=0.532 Sum_probs=136.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
.+|||||||..+++.+|+.+|.+||+|+.|.|+++ ||||..++...|..||..|||..|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 37999999999999999999999999999999997 99999999999999999999999999999999666310
Q ss_pred CCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhc
Q 037049 81 DPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK 160 (731)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (731)
T Consensus 76 -------------------------------------------------------------------------------- 75 (346)
T KOG0109|consen 76 -------------------------------------------------------------------------------- 75 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCc
Q 037049 161 VSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 240 (731)
T Consensus 76 -------------------------------------------------------------------------------- 75 (346)
T KOG0109|consen 76 -------------------------------------------------------------------------------- 75 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 037049 241 EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320 (731)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 320 (731)
..+.+|+|+||.+.++..+|+..|.
T Consensus 76 -------------------------------------------------------k~stkl~vgNis~tctn~ElRa~fe 100 (346)
T KOG0109|consen 76 -------------------------------------------------------KASTKLHVGNISPTCTNQELRAKFE 100 (346)
T ss_pred -------------------------------------------------------CCccccccCCCCccccCHHHhhhhc
Confidence 0122799999999999999999999
Q ss_pred cCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 321 ~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
+||+|.++.|++ +|+||+|.-.++|..|+..|++..|.|++++|+.+.++-
T Consensus 101 ~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 101 KYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 999999999975 489999999999999999999999999999999998754
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=8.3e-21 Score=179.50 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=82.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
....+|+|||.+||-..++.+|..+|-.||. |++.||..|+.+++ +|+||||.|+++.+|..||..|||+.|+-+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGh---ivSaKVFvDRATNQ--SKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGH---IVSAKVFVDRATNQ--SKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccc---eeeeeeeehhcccc--ccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 5678999999999999999999999999998 99999999997766 999999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|+|.+.++|..
T Consensus 356 RLKVQLKRPkda 367 (371)
T KOG0146|consen 356 RLKVQLKRPKDA 367 (371)
T ss_pred hhhhhhcCcccc
Confidence 999999988853
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=181.14 Aligned_cols=148 Identities=24% Similarity=0.405 Sum_probs=137.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCC
Q 037049 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST 575 (731)
Q Consensus 496 ~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 575 (731)
.|||+|||..+++.+|+.+|++||.|..+.|+ |+||||+.++...|.-||..|+|+.+.|..|.|+-+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEecccc-------
Confidence 58999999999999999999999999999985 789999999999999999999999999999999988643
Q ss_pred CcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecC
Q 037049 576 SKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLK 655 (731)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~ 655 (731)
...+++|+|.||.+.+|-.+|+..|++||+ |+.|+|.++
T Consensus 75 ------------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygp---viecdivkd-- 113 (346)
T KOG0109|consen 75 ------------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGP---VIECDIVKD-- 113 (346)
T ss_pred ------------------------------------CCCccccccCCCCccccCHHHhhhhcccCC---ceeeeeecc--
Confidence 224567999999999999999999999999 999999876
Q ss_pred CCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 656 NGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 656 ~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
|+||.|.-.++|..|++.|+|+.+.|++++|.++-.+-
T Consensus 114 --------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 --------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred --------eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 59999999999999999999999999999999996654
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=9.6e-19 Score=175.28 Aligned_cols=316 Identities=23% Similarity=0.249 Sum_probs=200.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCC--cccCCeEEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN--SIFQGRLLHV 372 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~~~g~~l~V 372 (731)
...++.|.++|||+.++|++|..++.+||.|..+.+.+.. ..||++|.+.++|..-+..... -.+.|+.|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceee
Confidence 3467799999999999999999999999999998876533 3899999999987764433322 3557888988
Q ss_pred EecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHH
Q 037049 373 MPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAV 452 (731)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~ 452 (731)
+|+....-... ..+. +.+ .+ .+.........
T Consensus 99 q~sn~~~lkt~----------s~p~-q~r------~~----------------~vy~~~s~~q~---------------- 129 (492)
T KOG1190|consen 99 QYSNHSELKTD----------SQPN-QIR------GQ----------------AVYQAVSSVQE---------------- 129 (492)
T ss_pred hhhhHHHHhcc----------Cchh-hhh------hh----------------hHHhhhhcccc----------------
Confidence 88653211000 0000 000 00 00000000000
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc-CCCC
Q 037049 453 RIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-STKT 531 (731)
Q Consensus 453 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~-~~kg 531 (731)
....+...++..+.. ..+.+--.++|.|+-+.++-+-|..+|++||.|.+|..+ +..+
T Consensus 130 ------------~~~~~s~~~~~~G~~---------~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~ 188 (492)
T KOG1190|consen 130 ------------IVLPLSASAVVVGNE---------DGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG 188 (492)
T ss_pred ------------ccccccccccccccc---------CCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc
Confidence 000000000000000 012233467889999999999999999999999998655 5666
Q ss_pred -EEEEEeCCHHHHHHHHHhcCCCccC-C-ceEEEEeCCCCc------------cccCCCCcC-CCCC------------c
Q 037049 532 -LALVVFLEPVEAAAAFKGLAYKRYK-G-VPLYLEWAPSDV------------LSQSSTSKG-NQKN------------D 583 (731)
Q Consensus 532 -~afV~F~~~e~A~~Ai~~lng~~~~-g-r~l~v~~a~~~~------------~~~~~~~~~-~~~~------------~ 583 (731)
.|+|+|.+.+.|..|-..|+|+.|. | +.|+|.|..-.. +..+.-+.+ .++. .
T Consensus 189 FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~ 268 (492)
T KOG1190|consen 189 FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVP 268 (492)
T ss_pred hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccc
Confidence 4999999999999999999999865 3 557887764211 111111100 0000 0
Q ss_pred ccccchhhHhhhHHhhhhcCCCCCCCCCCCC--CCeEEEeCCC-CCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcc
Q 037049 584 AVVGEHDAKRALLEQQLEGVTDADIDPDRVE--SRSLFVKNLN-FKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNV 660 (731)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~V~NLp-~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~ 660 (731)
...+........... ..........+ .++|.|.||. ..+|.+-|..+|.-||. |..|+|++++.
T Consensus 269 ~~~g~p~aip~~~~~-----a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGd---VqRVkil~nkk----- 335 (492)
T KOG1190|consen 269 AVHGAPLAIPSGAAG-----ANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGD---VQRVKILYNKK----- 335 (492)
T ss_pred cccCCcccCCccchh-----hcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcc---eEEEEeeecCC-----
Confidence 000000000000000 00000111112 4679999987 58899999999999999 99999999863
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 661 SMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 661 ~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
--|+|.+.+...|.-|+..|+|..|+|++|+|.++|...
T Consensus 336 --d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 336 --DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred --cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 239999999999999999999999999999999998765
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=2.5e-19 Score=181.99 Aligned_cols=171 Identities=29% Similarity=0.496 Sum_probs=149.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||++|+|.++++.|+.+|++||.|.+|.+++|+. ++++||+||+|.+++....+|. ..-+.|+|+.|.+..+.++
T Consensus 7 ~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 7 GKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred cceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceeccCc
Confidence 5799999999999999999999999999999999999 9999999999999999999987 4556689999988877754
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
.+...+.
T Consensus 86 ~~~~~~~------------------------------------------------------------------------- 92 (311)
T KOG4205|consen 86 EDQTKVG------------------------------------------------------------------------- 92 (311)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 2210000
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 93 -------------------------------------------------------------------------------- 92 (311)
T KOG4205|consen 93 -------------------------------------------------------------------------------- 92 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
. .....+|||++||..+++++++++|
T Consensus 93 -------------------------------------~-----------------~~~tkkiFvGG~~~~~~e~~~r~yf 118 (311)
T KOG4205|consen 93 -------------------------------------R-----------------HLRTKKIFVGGLPPDTTEEDFKDYF 118 (311)
T ss_pred -------------------------------------c-----------------ccceeEEEecCcCCCCchHHHhhhh
Confidence 0 1134489999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~ 380 (731)
.+||.|..+.++.|..+.+++||+||.|.+.+++.+++ ....+.|.|+.+.|..|.++..
T Consensus 119 e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 119 EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred hccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchhh
Confidence 99999999999999999999999999999999999999 7788999999999999998754
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=4.6e-19 Score=167.75 Aligned_cols=92 Identities=29% Similarity=0.420 Sum_probs=86.4
Q ss_pred cchhcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCe
Q 037049 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGR 368 (731)
Q Consensus 289 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~ 368 (731)
...+.+.+++|.|||..||....+.+|..+|-.||.|.+.+|..|+.|+.++.||||.|.++.+|+.||..|||+.|+-+
T Consensus 276 ~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 276 PQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 33566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 037049 369 LLHVMPARHKKS 380 (731)
Q Consensus 369 ~l~V~~a~~~~~ 380 (731)
+|+|.+.+++..
T Consensus 356 RLKVQLKRPkda 367 (371)
T KOG0146|consen 356 RLKVQLKRPKDA 367 (371)
T ss_pred hhhhhhcCcccc
Confidence 999999887653
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=1.4e-17 Score=171.76 Aligned_cols=291 Identities=17% Similarity=0.228 Sum_probs=200.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
..+...|-+++||+++|+++|++||+.++ |..+.+.+. +|+..|-|||+|.+.+++.+|+ +.+...+..|.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 34456789999999999999999999995 888665553 7999999999999999999999 7888889999999998
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
+........ ++.
T Consensus 83 ~~~~e~d~~-------------~~~------------------------------------------------------- 94 (510)
T KOG4211|consen 83 AGGAEADWV-------------MRP------------------------------------------------------- 94 (510)
T ss_pred cCCcccccc-------------ccC-------------------------------------------------------
Confidence 875432100 000
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeE-EEcc-----C
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDK-VILP-----S 528 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~-v~l~-----~ 528 (731)
.. ........+|.+++||+.+++++|.++|+..-.+.. |.++ +
T Consensus 95 ------------------~g-------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR 143 (510)
T KOG4211|consen 95 ------------------GG-------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR 143 (510)
T ss_pred ------------------CC-------------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC
Confidence 00 001123457999999999999999999998766655 3333 4
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCC----------cCC---CCCcccccchh-----
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTS----------KGN---QKNDAVVGEHD----- 590 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~----------~~~---~~~~~~~~~~~----- 590 (731)
+.|-|||+|++.+.|+.|+.. |...|+.|.|.|..+....+.....+ ... .+.........
T Consensus 144 ~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~ 222 (510)
T KOG4211|consen 144 PTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRN 222 (510)
T ss_pred cccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCcc
Confidence 678999999999999999987 67889999999988764443332211 000 00000000000
Q ss_pred --h--------HhhhH----------------HhhhhcCC-------CCCCCCCCC-CCCeEEEeCCCCCCCHHHHHHHh
Q 037049 591 --A--------KRALL----------------EQQLEGVT-------DADIDPDRV-ESRSLFVKNLNFKTCDENLRKHF 636 (731)
Q Consensus 591 --~--------~~~~~----------------~~~~~~~~-------~~~~~~~~~-~~~~L~V~NLp~~~tee~L~~~F 636 (731)
+ ..... .+.....+ ..+...... .+..++.++||+..++.+|..+|
T Consensus 223 ~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfF 302 (510)
T KOG4211|consen 223 ATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFF 302 (510)
T ss_pred ccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhc
Confidence 0 00000 00000000 000011111 22558899999999999999999
Q ss_pred ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Q 037049 637 GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697 (731)
Q Consensus 637 ~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~a 697 (731)
+..-. ..|.|-... +| +..|-|+|+|.+.++|..|+. -++..+..+.|.+.+-
T Consensus 303 spl~p----~~v~i~ig~-dG--r~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 303 SPLNP----YRVHIEIGP-DG--RATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLN 355 (510)
T ss_pred CCCCc----eeEEEEeCC-CC--ccCCcceeecccchhhHhhhc-cCCcccCcceeeeccc
Confidence 98765 467776654 33 478889999999999999987 4788888888887765
No 48
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.5e-17 Score=175.09 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=141.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
+.+||++||...++.++++++..||.+....++.|..+|.++||||.+|.++.....|+..|||..+++++|.|+.|...
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhh
Q 037049 379 KSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGE 458 (731)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~ 458 (731)
..... .|.... .. .+.
T Consensus 370 ~~~~~--------------------------------~~~~~~--~~-~~~----------------------------- 385 (500)
T KOG0120|consen 370 ASNAN--------------------------------VNFNIS--QS-QVP----------------------------- 385 (500)
T ss_pred chhcc--------------------------------ccCCcc--cc-ccc-----------------------------
Confidence 32100 000000 00 000
Q ss_pred hHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCC--CC-C-------HHHHHHHhcccCceeEEEccC
Q 037049 459 TQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPY--DS-S-------EGELAKMFGKFGSLDKVILPS 528 (731)
Q Consensus 459 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~--~~-t-------e~~L~~~F~~~G~i~~v~l~~ 528 (731)
++.. ........+..+|.+.|+-. .. + -++++..|.+||.|..|.+++
T Consensus 386 --------------~i~~--------~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 386 --------------GIPL--------LMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred --------------cchh--------hhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 0000 00001233445566555521 11 1 156777888999999999985
Q ss_pred C---------CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCcc
Q 037049 529 T---------KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVL 570 (731)
Q Consensus 529 ~---------kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 570 (731)
. .|..||+|.+.++|++|++.|+|+.|.||++...|.+.+.+
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 3 47899999999999999999999999999999999976544
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.73 E-value=4e-17 Score=164.63 Aligned_cols=242 Identities=21% Similarity=0.283 Sum_probs=199.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSK-FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
.+.+||.|||+++.+.+|+.+|.. .|.|..|.+..|. +|+++|+|.|+|.++|.+++|++.||.+.+.||+|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346999999999999999999986 7899999999999 89999999999999999999999999999999999998765
Q ss_pred CCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHh
Q 037049 377 HKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIAL 456 (731)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~ 456 (731)
.....++.
T Consensus 123 d~q~~~~~------------------------------------------------------------------------ 130 (608)
T KOG4212|consen 123 DEQRDQYG------------------------------------------------------------------------ 130 (608)
T ss_pred chhhhhhh------------------------------------------------------------------------
Confidence 32110000
Q ss_pred hhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc-----CCCC
Q 037049 457 GETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----STKT 531 (731)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~-----~~kg 531 (731)
...+...+.|+.++.+.+-..-|...|.--|...+-.+. ++++
T Consensus 131 --------------------------------~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~ 178 (608)
T KOG4212|consen 131 --------------------------------RIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRR 178 (608)
T ss_pred --------------------------------heeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccc
Confidence 023345578999999999999999999888876655444 3677
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCC
Q 037049 532 LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPD 611 (731)
Q Consensus 532 ~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (731)
..++.|.+.-.+..++..+++....-+.+++ +.+.
T Consensus 179 ~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~pP-------------------------------------------- 213 (608)
T KOG4212|consen 179 NNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-FSPP-------------------------------------------- 213 (608)
T ss_pred cCccccccccccchhhhcccchhhhhhhccC-CCCC--------------------------------------------
Confidence 8999999998998888777666666666664 2211
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
....+||.||.+.+.-..|++.|.-.|. |+.+.+-.++ .| .++|||.|+|..+-+|..||..+++.-+..++
T Consensus 214 --l~~k~fvanl~~~vg~~kL~qvfgmAGk---v~~vdf~idK-eG--~s~G~~vi~y~hpveavqaIsml~~~g~~~~~ 285 (608)
T KOG4212|consen 214 --LHNKVFVANLDYKVGNKKLKQVFGMAGK---VQSVDFSIDK-EG--NSRGFAVIEYDHPVEAVQAISMLDRQGLFDRR 285 (608)
T ss_pred --ccceeeeeccccccchHHHHHHhcccee---eeeeceeecc-cc--ccCCeeEEEecchHHHHHHHHhhccCCCcccc
Confidence 1235899999999999999999999888 9999988887 33 48999999999999999999999998888899
Q ss_pred EEEEec
Q 037049 692 LILQLC 697 (731)
Q Consensus 692 l~v~~a 697 (731)
..+.+.
T Consensus 286 ~~~Rl~ 291 (608)
T KOG4212|consen 286 MTVRLD 291 (608)
T ss_pred ceeecc
Confidence 888884
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=1.4e-16 Score=149.68 Aligned_cols=209 Identities=22% Similarity=0.330 Sum_probs=148.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHH----HHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEE
Q 037049 295 VLESGRLFVRNLPYTATEDELRE----HFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~----~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l 370 (731)
..++.||||.||+..+..++|+. +|++||.|.+|.... +.+.+|.|||.|.+.+.|..|+..|+|..|.|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34455999999999999999987 999999999998876 77899999999999999999999999999999999
Q ss_pred EEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchH
Q 037049 371 HVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDL 450 (731)
Q Consensus 371 ~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 450 (731)
+|+||+.+..-....... ...........+ ... .......+..+.+
T Consensus 83 riqyA~s~sdii~~~~~~-~v~~~~k~~~~~---~~~---~~~~~~~ng~~~~--------------------------- 128 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGT-FVEKEKKINGEI---LAR---IKQPLDTNGHFYN--------------------------- 128 (221)
T ss_pred heecccCccchhhccCce-eccccCcccccc---ccc---cCCcccccccccc---------------------------
Confidence 999999765422211100 000000000000 000 0000000000000
Q ss_pred HHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC-C
Q 037049 451 AVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS-T 529 (731)
Q Consensus 451 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~-~ 529 (731)
....+..... . ....++...+|+.|||..++.+.|..+|.+|.....|.+.. .
T Consensus 129 ------------------~~~~~~p~p~-------~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 129 ------------------MNRMNLPPPF-------L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred ------------------cccccCCCCc-------c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 0000000000 0 11356778999999999999999999999999999998776 6
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccC-CceEEEEeCC
Q 037049 530 KTLALVVFLEPVEAAAAFKGLAYKRYK-GVPLYLEWAP 566 (731)
Q Consensus 530 kg~afV~F~~~e~A~~Ai~~lng~~~~-gr~l~v~~a~ 566 (731)
++.|||+|.+...|..|...+.|..+. ...|.|.++.
T Consensus 183 ~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 183 SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 789999999999999999999998887 8888888874
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=2.2e-16 Score=148.52 Aligned_cols=194 Identities=20% Similarity=0.237 Sum_probs=142.3
Q ss_pred CcEEEEeCCCCCCCHHHHHH----HhcccCceeEEEcc---CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 494 NHVFLVKNLPYDSSEGELAK----MFGKFGSLDKVILP---STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 494 ~~~l~V~NLp~~~te~~L~~----~F~~~G~i~~v~l~---~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
..+|||.||+..+.-++|+. +|++||.|..|... +-+|.|||.|.+.+.|..|+..|+|..|.|++|+|.||.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34999999999999888887 99999999988776 468999999999999999999999999999999999997
Q ss_pred CCccccCCCCcCCC--CCcccccchhhHhhhHHhhhh--------cCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHh
Q 037049 567 SDVLSQSSTSKGNQ--KNDAVVGEHDAKRALLEQQLE--------GVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHF 636 (731)
Q Consensus 567 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F 636 (731)
.+...-.+...... ....... .........+... ............+...||+.|||..++.+-|..+|
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~-~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGE-ILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred CccchhhccCceeccccCccccc-cccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 54422211100000 0000000 0000000000000 00000001234566779999999999999999999
Q ss_pred ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEecc
Q 037049 637 GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD-GHALILQLCH 698 (731)
Q Consensus 637 ~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~-Gr~l~v~~ak 698 (731)
+.|.. ...++++.. -.|.|||+|.+...|..|...++|..|- .+.+.+.+|+
T Consensus 168 ~qf~g---~keir~i~~-------~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPG---FKEIRLIPP-------RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcc---cceeEeccC-------CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999 888888875 3678999999999999999999999996 9999999986
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.68 E-value=1.4e-14 Score=143.87 Aligned_cols=316 Identities=18% Similarity=0.148 Sum_probs=217.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc--CCcccCCeEEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL--DNSIFQGRLLHV 372 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l--~~~~~~g~~l~V 372 (731)
...+-.|.|++|-..+++.+|.+.++.||.|..+..+.. +..|.|+|.+.+.|..++... +...+.|+.-.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 345558999999999999999999999999988877653 347999999999999998332 223445655555
Q ss_pred EecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHH
Q 037049 373 MPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAV 452 (731)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~ 452 (731)
.++.+....+.
T Consensus 102 NyStsq~i~R~--------------------------------------------------------------------- 112 (494)
T KOG1456|consen 102 NYSTSQCIERP--------------------------------------------------------------------- 112 (494)
T ss_pred ccchhhhhccC---------------------------------------------------------------------
Confidence 55543221000
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcE--EEEeCCCCCCCHHHHHHHhcccCceeEEEccCCC
Q 037049 453 RIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHV--FLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK 530 (731)
Q Consensus 453 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~k 530 (731)
| .....++.. +-|-|--+.+|.+-|+.++...|.|.+|.|++..
T Consensus 113 --------------------g--------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn 158 (494)
T KOG1456|consen 113 --------------------G--------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN 158 (494)
T ss_pred --------------------C--------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc
Confidence 0 001122223 3355656778999999999999999999998766
Q ss_pred C-EEEEEeCCHHHHHHHHHhcCCCccC-C-ceEEEEeCCCCccccCCCCcCCC--------------CCcccccch----
Q 037049 531 T-LALVVFLEPVEAAAAFKGLAYKRYK-G-VPLYLEWAPSDVLSQSSTSKGNQ--------------KNDAVVGEH---- 589 (731)
Q Consensus 531 g-~afV~F~~~e~A~~Ai~~lng~~~~-g-r~l~v~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~---- 589 (731)
| .|+|+|++.+.|++|-.+|||.-|. | ++|+|+||......-.....+.+ ++.......
T Consensus 159 gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~ 238 (494)
T KOG1456|consen 159 GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPL 238 (494)
T ss_pred ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCcc
Confidence 6 7999999999999999999998765 3 67999999643322111111111 000000000
Q ss_pred ----hhHhh---hHHhh-hhc------------CCC---CCCCCCCCCCCeEEEeCCCC-CCCHHHHHHHhccccCcccE
Q 037049 590 ----DAKRA---LLEQQ-LEG------------VTD---ADIDPDRVESRSLFVKNLNF-KTCDENLRKHFGEHIKEGRI 645 (731)
Q Consensus 590 ----~~~~~---~~~~~-~~~------------~~~---~~~~~~~~~~~~L~V~NLp~-~~tee~L~~~F~~~G~~~~I 645 (731)
...+- .+... +.+ ... -.......+++.+.|.+|.. .++-+.|..+|+-||. |
T Consensus 239 ~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN---V 315 (494)
T KOG1456|consen 239 GYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN---V 315 (494)
T ss_pred CCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc---e
Confidence 00000 00000 000 000 01123455778899999996 5678999999999999 9
Q ss_pred EEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchh----------------------
Q 037049 646 LSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE---------------------- 703 (731)
Q Consensus 646 ~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~---------------------- 703 (731)
..|+.|+.+ .|.|.|++.+..+.++|+..||+..+.|.+|.|.++|+.--.
T Consensus 316 ~rvkFmkTk-------~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkN 388 (494)
T KOG1456|consen 316 ERVKFMKTK-------PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKN 388 (494)
T ss_pred eeEEEeecc-------cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccc
Confidence 999999964 456999999999999999999999999999999999876411
Q ss_pred ----hHHhhhc--cCCCCceEEEeeccceeee
Q 037049 704 ----QVVKKAE--KDKSSTKLLVRNVAFEAQR 729 (731)
Q Consensus 704 ----~~~~~~~--~~~~~~~~~~~n~~~~~~~ 729 (731)
..++..+ ..-++..|+.=|.|...|+
T Consensus 389 nRFssp~qAsKNrIq~Ps~vLHffNaP~~vtE 420 (494)
T KOG1456|consen 389 NRFSSPEQASKNRIQPPSNVLHFFNAPLGVTE 420 (494)
T ss_pred cccCChhHhhcccccCCcceeEEecCCCccCH
Confidence 0011111 2338999999999998886
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3e-15 Score=134.64 Aligned_cols=77 Identities=32% Similarity=0.505 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||.++-+.+|..+|-+||.|..|.|... -...+||||+|+++.+|+.||.--+|+.++|..|+|+++...
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 58999999999999999999999999999987543 233579999999999999999999999999999999998753
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.65 E-value=3.7e-16 Score=158.94 Aligned_cols=167 Identities=25% Similarity=0.451 Sum_probs=143.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
+.++|||++|++.++++.|+.+|..||.|.++.+++|+.+++++||+||.|.+++....+| ....+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5679999999999999999999999999999999999999999999999999999999999 566788999999999998
Q ss_pred CCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHh
Q 037049 377 HKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIAL 456 (731)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~ 456 (731)
++.......
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 765311000
Q ss_pred hhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------CCC
Q 037049 457 GETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STK 530 (731)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~~k 530 (731)
.......|||++||..++++++++.|.+||.|..+.++ +.+
T Consensus 93 ---------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~r 139 (311)
T KOG4205|consen 93 ---------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPR 139 (311)
T ss_pred ---------------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccc
Confidence 11134579999999999999999999999988877665 478
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCc
Q 037049 531 TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 531 g~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 569 (731)
||+||.|.+.+.+.+++. .....|.|+.+.|..|..+.
T Consensus 140 gFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 140 GFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred cceeeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 999999999998888875 47788999999999996554
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.9e-15 Score=134.77 Aligned_cols=180 Identities=23% Similarity=0.306 Sum_probs=134.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||.++.+.+|..+|-+||.|..|.+..-+ ....||||+|.++.+|+.||.--+|..+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999885432 24679999999999999999999999999999999999
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
+.-........ . +. ......|
T Consensus 81 rggr~s~~~~G-~--------y~------------gggrgGg-------------------------------------- 101 (241)
T KOG0105|consen 81 RGGRSSSDRRG-S--------YS------------GGGRGGG-------------------------------------- 101 (241)
T ss_pred cCCCccccccc-c--------cC------------CCCCCCC--------------------------------------
Confidence 85432110000 0 00 0000000
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEE
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALV 535 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV 535 (731)
+..... .+....+...+.|.+||.+.++++|+++....|.|+...+.+ .|+++|
T Consensus 102 -----------------g~gg~r--------gppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r-Dg~GvV 155 (241)
T KOG0105|consen 102 -----------------GGGGRR--------GPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR-DGVGVV 155 (241)
T ss_pred -----------------CCCccc--------CCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec-ccceee
Confidence 000000 001234567899999999999999999999999999887765 458999
Q ss_pred EeCCHHHHHHHHHhcCCCccC--CceEEEE
Q 037049 536 VFLEPVEAAAAFKGLAYKRYK--GVPLYLE 563 (731)
Q Consensus 536 ~F~~~e~A~~Ai~~lng~~~~--gr~l~v~ 563 (731)
.|...++...|+..|+...|. |-...+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 999999999999999988776 4444443
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=1.1e-15 Score=140.61 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=76.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|.+||.|.+|.|+.++. ++++|||||+|.+.++|+.||+.||+..|.|+.|+|.++.++
T Consensus 35 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 5899999999999999999999999999999999987 999999999999999999999999999999999999999864
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 115 ~ 115 (144)
T PLN03134 115 P 115 (144)
T ss_pred C
Confidence 3
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=5.6e-15 Score=157.37 Aligned_cols=290 Identities=19% Similarity=0.291 Sum_probs=196.3
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhcC-----------C-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 037049 294 EVLESGRLFVRNLPYTATEDELREHFSKF-----------G-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361 (731)
Q Consensus 294 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-----------G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~ 361 (731)
.......++|+++|..++++....+|..- | .+..+.+.. -+.|||++|.+.++|..|+ .++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-ALD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-ccc
Confidence 35667899999999999999999988753 3 255555533 4569999999999999999 899
Q ss_pred CcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCccc
Q 037049 362 NSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSD 441 (731)
Q Consensus 362 ~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 441 (731)
+..+.|+.+.+..-....... .. +... ...+
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p----------------~~--------------------------~~~~--~~~~----- 274 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVP----------------GI--------------------------TLSP--SQLG----- 274 (500)
T ss_pred chhhCCCCceecccccccCCc----------------cc--------------------------hhhh--cccc-----
Confidence 999999998887544321100 00 0000 0000
Q ss_pred ccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCce
Q 037049 442 LLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL 521 (731)
Q Consensus 442 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i 521 (731)
.+.. ...........+.|||.+||...++.++.++...||.+
T Consensus 275 ------------------------------------~~~~--~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 275 ------------------------------------KVGL--LPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred ------------------------------------ccCC--cccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 0000 00001133456789999999999999999999999998
Q ss_pred eEEEcc------CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhh
Q 037049 522 DKVILP------STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRAL 595 (731)
Q Consensus 522 ~~v~l~------~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (731)
....+. .++||||.+|.++.-...|+..|||..++++.|.|..|-.............+ + ....+.
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~-~-----~~~~i~-- 388 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQ-S-----QVPGIP-- 388 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccc-c-----ccccch--
Confidence 866555 37899999999999999999999999999999999999544322211100000 0 000000
Q ss_pred HHhhhhcCCCCCCCCCCCCCCeEEEeCCCC--CC-CH-------HHHHHHhccccCcccEEEEEEeeec-CCCCcccccE
Q 037049 596 LEQQLEGVTDADIDPDRVESRSLFVKNLNF--KT-CD-------ENLRKHFGEHIKEGRILSVKVKKHL-KNGKNVSMGF 664 (731)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~--~~-te-------e~L~~~F~~~G~~~~I~~vki~~~~-~~~~~~~kG~ 664 (731)
.........++.+|.+.|+-. .. .+ |+++.-+.+|| .|.+|.|++.. ...-...-|-
T Consensus 389 ---------~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g---~v~~v~ipr~~~~~~~~~G~Gk 456 (500)
T KOG0120|consen 389 ---------LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG---AVRSVEIPRPYPDENPVPGTGK 456 (500)
T ss_pred ---------hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC---ceeEEecCCCCCCCCcCCCccc
Confidence 000111345566677777522 11 22 33333444455 49999999984 2222224667
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Q 037049 665 GFIEFDSVETATNVCRDLQGTILDGHALILQLC 697 (731)
Q Consensus 665 afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~a 697 (731)
.||+|.+.++|++|++.|+|+.+.||.|..+|=
T Consensus 457 VFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 457 VFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred EEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 899999999999999999999999999999884
No 58
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=2.1e-14 Score=141.98 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=146.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVS--------EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ 366 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~ 366 (731)
...+..|||.|||.++|.+++.++|+.+|-|. .|+|.++. .|..+|-|++.|...+++.-|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33455799999999999999999999999774 47888988 6999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcc
Q 037049 367 GRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDRE 446 (731)
Q Consensus 367 g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 446 (731)
|+.|+|+.|+-............ .......++.. ..+ .....|.+...
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~-k~k~~~~kk~~---k~q----~k~~dw~pd~~------------------------ 257 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKE-KGKCKDKKKLK---KQQ----QKLLDWRPDRD------------------------ 257 (382)
T ss_pred CcEEEEehhhhhhccCcCccccc-ccccccHHHHH---HHH----HhhcccCCCcc------------------------
Confidence 99999999986433211111100 00001111111 000 01112211110
Q ss_pred cchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCC----CC-------HHHHHHHh
Q 037049 447 ANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYD----SS-------EGELAKMF 515 (731)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~----~t-------e~~L~~~F 515 (731)
.....+..++|.++||-.- .+ .++|.+-+
T Consensus 258 ----------------------------------------~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec 297 (382)
T KOG1548|consen 258 ----------------------------------------DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEEC 297 (382)
T ss_pred ----------------------------------------ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHH
Confidence 0013456789999998421 23 36777889
Q ss_pred cccCceeEEEcc--CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCC
Q 037049 516 GKFGSLDKVILP--STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 516 ~~~G~i~~v~l~--~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~ 567 (731)
++||.|.+|.|. .+.|.+-|.|.+.+.|..||+.|+|+.|.||.|..+.-..
T Consensus 298 ~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 298 EKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 999999999998 6889999999999999999999999999999999877654
No 59
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=7.8e-15 Score=135.99 Aligned_cols=237 Identities=17% Similarity=0.217 Sum_probs=132.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEee-eCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC---CeEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVV-DKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ---GRLL 370 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~-d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~---g~~l 370 (731)
...-+||||.|||.++...+|..+|.+|-..+...+.. ++.....+.+|||.|.+..+|..|+..|||..|. +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44568999999999999999999999986566665533 2212234579999999999999999999999986 8899
Q ss_pred EEEecCCCCCCchhhccc-ccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccch
Q 037049 371 HVMPARHKKSSDKQELHN-STSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND 449 (731)
Q Consensus 371 ~V~~a~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 449 (731)
+|++|+............ ...............+.............+++.... ..............+..-.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~------~~~a~al~~~~~t~~~~l~ 184 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQE------PGNADALKENDTTKSEALS 184 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCC------ccccccCCCccccchhhhh
Confidence 999998754432221111 000000000000000000000000000000000000 0000000000000000000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCC
Q 037049 450 LAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST 529 (731)
Q Consensus 450 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~ 529 (731)
++..+..+ ... +...++......+...+|||-||..++++++|+.+|+.|-.....+|...
T Consensus 185 a~~~~~P~-----------------a~a--~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~ 245 (284)
T KOG1457|consen 185 APDSKAPS-----------------ANA--HLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR 245 (284)
T ss_pred hhhhcCCc-----------------ccc--hhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC
Confidence 00000000 000 00011111112334568999999999999999999999988776666543
Q ss_pred CC--EEEEEeCCHHHHHHHHHhcCCCccC
Q 037049 530 KT--LALVVFLEPVEAAAAFKGLAYKRYK 556 (731)
Q Consensus 530 kg--~afV~F~~~e~A~~Ai~~lng~~~~ 556 (731)
.| .||+.|.+.+.|..||..|.|..+-
T Consensus 246 ~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 246 GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 33 8999999999999999999887654
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=6.2e-15 Score=135.53 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=79.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
...+++|||+|||..+|+++|+++|.+||. |.+++|+.+..+++ ++|||||+|.+.++|.+||..||+..|.|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~--~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGD---VVDAKVIVDRETGR--SRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCC--cceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 446678999999999999999999999999 99999999876655 8999999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|+|.++..+..
T Consensus 106 l~V~~a~~~~~ 116 (144)
T PLN03134 106 IRVNPANDRPS 116 (144)
T ss_pred EEEEeCCcCCC
Confidence 99999987654
No 61
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=142.08 Aligned_cols=284 Identities=16% Similarity=0.243 Sum_probs=189.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSE-VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
++..|-.++||+..++.+|..+|....-..- +.++... .|+..|.|.|.|.+.+.-+.|+ ..+...+.++.|.|-.+
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~-qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNA-QGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehh-hhccccceEEEecCchhhhhhh-HhhhhhccCCceeeecc
Confidence 3446789999999999999999987532221 2233333 6778899999999999999999 66788889999999877
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
....- ++-.. ..+
T Consensus 137 ~ge~f----------------~~iag---------g~s------------------------------------------ 149 (508)
T KOG1365|consen 137 TGEEF----------------LKIAG---------GTS------------------------------------------ 149 (508)
T ss_pred Cchhh----------------eEecC---------Ccc------------------------------------------
Confidence 64211 00000 000
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCcee----EEEcc----
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD----KVILP---- 527 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~----~v~l~---- 527 (731)
.....|. .....-.|.+++||++.++.++..+|.+.++|. .|.+.
T Consensus 150 ------------------~e~~~fl---------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd 202 (508)
T KOG1365|consen 150 ------------------NEAAPFL---------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD 202 (508)
T ss_pred ------------------ccCCCCC---------CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC
Confidence 0000000 111233578899999999999999998655443 33332
Q ss_pred -CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHH-hhhhcCCC
Q 037049 528 -STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLE-QQLEGVTD 605 (731)
Q Consensus 528 -~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 605 (731)
+..|-|||.|..+++|+.|+.+ |...++-|.|.+.........+ -+.+... ........
T Consensus 203 grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqq------------------vlnr~~s~pLi~~~~s 263 (508)
T KOG1365|consen 203 GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQ------------------VLNREVSEPLIPGLTS 263 (508)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHH------------------HHHhhccccccCCCCC
Confidence 4578999999999999999987 6566777777654432111000 0000000 00000000
Q ss_pred CC---CCC----CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEE--EEEeeecCCCCcccccEEEEEeCCHHHHH
Q 037049 606 AD---IDP----DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS--VKVKKHLKNGKNVSMGFGFIEFDSVETAT 676 (731)
Q Consensus 606 ~~---~~~----~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~--vki~~~~~~~~~~~kG~afV~F~s~e~A~ 676 (731)
.. ... ......+|.+++||+..|.++|.+||..|-. .|+. |.+.. +++|++.|-|||+|.+.+.|.
T Consensus 264 p~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~--~i~f~gVHmv~---N~qGrPSGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 264 PLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFAT--DIRFQGVHMVL---NGQGRPSGEAFIQMRNAERAR 338 (508)
T ss_pred CCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhh--hcccceeEEEE---cCCCCcChhhhhhhhhhHHHH
Confidence 00 000 1112456999999999999999999999965 2444 55555 467889999999999999999
Q ss_pred HHHHHhCCCccCCcEEEEEeccCC
Q 037049 677 NVCRDLQGTILDGHALILQLCHAK 700 (731)
Q Consensus 677 ~Ai~~lng~~i~Gr~l~v~~ak~~ 700 (731)
.|....|.+...+|.|.|--+.-.
T Consensus 339 aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 339 AAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred HHHHHHHHhhcccceEEEeeccHH
Confidence 999999999889999999877544
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.56 E-value=3.4e-14 Score=131.80 Aligned_cols=186 Identities=23% Similarity=0.375 Sum_probs=127.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc-C------CCCEEEEEeCCHHHHHHHHHhcCCCccC---CceEEE
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-S------TKTLALVVFLEPVEAAAAFKGLAYKRYK---GVPLYL 562 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~-~------~kg~afV~F~~~e~A~~Ai~~lng~~~~---gr~l~v 562 (731)
.-++|||.+||.++...+|+.+|..|-.-+...|. . .+.+|||.|.+...|.+|+..|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999999776665554 1 2359999999999999999999999998 889999
Q ss_pred EeCCCCccccCCCCcCC--CCCccc--ccchhhHhhhHHhhhhc-----------------------------------C
Q 037049 563 EWAPSDVLSQSSTSKGN--QKNDAV--VGEHDAKRALLEQQLEG-----------------------------------V 603 (731)
Q Consensus 563 ~~a~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------------~ 603 (731)
++|..+.-.......+. ++.... .......+....++... .
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 99975543222221110 000000 00000000000000000 0
Q ss_pred C------CCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHH
Q 037049 604 T------DADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677 (731)
Q Consensus 604 ~------~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~ 677 (731)
. .........-..||||-||...+||++|+.+|+.|.. +...+|... . ....||+.|.+.+.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g---f~~l~~~~~--~----g~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG---FHILKIRAR--G----GMPVAFADFEEIEQATD 263 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC---ceEEEEecC--C----CcceEeecHHHHHHHHH
Confidence 0 0000011122356999999999999999999999998 787777653 2 45679999999999999
Q ss_pred HHHHhCCCcc
Q 037049 678 VCRDLQGTIL 687 (731)
Q Consensus 678 Ai~~lng~~i 687 (731)
|+..|+|..|
T Consensus 264 am~~lqg~~~ 273 (284)
T KOG1457|consen 264 AMNHLQGNLL 273 (284)
T ss_pred HHHHhhccee
Confidence 9999999887
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=1.9e-13 Score=135.21 Aligned_cols=194 Identities=23% Similarity=0.270 Sum_probs=140.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCcee--------EEEccC-----CCCEEEEEeCCHHHHHHHHHhcCCCccCCce
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLD--------KVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKRYKGVP 559 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~--------~v~l~~-----~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~ 559 (731)
-++.|||.|||.++|.+++.++|+++|.|. +|+|.+ -||-|+|.|-..++...|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456799999999999999999999999886 455553 5789999999999999999999999999999
Q ss_pred EEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhc---CCCCCCCCCCCCCCeEEEeCCCC----CCC----
Q 037049 560 LYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEG---VTDADIDPDRVESRSLFVKNLNF----KTC---- 628 (731)
Q Consensus 560 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~V~NLp~----~~t---- 628 (731)
|+|+.|.-..-..... .....+.....+.......+. .............++|.++||-. ..+
T Consensus 213 ~rVerAkfq~Kge~~~------~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDA------SKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred EEEehhhhhhccCcCc------ccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 9999996322111000 000010111122211111111 11111222344567899999843 223
Q ss_pred ---HHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 629 ---DENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 629 ---ee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
.++|++-..+||. |.+|.|.-.+ +.|.+-|.|.+.++|..||+.|+|+.+.||+|..++-..+.
T Consensus 287 ~dlkedl~eec~K~G~---v~~vvv~d~h------PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQ---VRKVVVYDRH------PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHHHhCC---cceEEEeccC------CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 4667777888998 9999998766 56779999999999999999999999999999999876655
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2e-14 Score=115.73 Aligned_cols=70 Identities=44% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRIS 72 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~ 72 (731)
|||+|||+++|+++|+++|++||.|..+.++.+..+.++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999986699999999999999999999999999999999986
No 65
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=137.65 Aligned_cols=187 Identities=20% Similarity=0.215 Sum_probs=125.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcC----CCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 300 RLFVRNLPYTATEDELREHFSKF----GNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
.|-+++||+++++.++..||... |..+.|-++..+ +|+..|-|||.|..+++|+.|| .-|...++.|.|.+-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHHHHH
Confidence 57899999999999999999632 345667666666 8999999999999999999999 45555666565555433
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
... +-.+.-+...+. ++..
T Consensus 241 Taa------------------------Evqqvlnr~~s~----pLi~--------------------------------- 259 (508)
T KOG1365|consen 241 TAA------------------------EVQQVLNREVSE----PLIP--------------------------------- 259 (508)
T ss_pred hHH------------------------HHHHHHHhhccc----cccC---------------------------------
Confidence 311 000000000000 0000
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCcee---EEEcc-----
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLD---KVILP----- 527 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~---~v~l~----- 527 (731)
. .....+...+.. ......+..+|.+++||+..+.++|..+|..|-.-. .|++.
T Consensus 260 ---------------~--~~sp~~p~~p~~-~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qG 321 (508)
T KOG1365|consen 260 ---------------G--LTSPLLPGGPAR-LVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQG 321 (508)
T ss_pred ---------------C--CCCCCCCCCccc-cCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCC
Confidence 0 000000000000 001234467999999999999999999999886433 24443
Q ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCC
Q 037049 528 STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 528 ~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~ 567 (731)
+..|-|||+|.+.++|.+|..+.+.....+|.|.|..+.-
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 5678999999999999999999888888899999988763
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.6e-14 Score=131.77 Aligned_cols=79 Identities=32% Similarity=0.466 Sum_probs=76.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|-|.|||.+++|.+|+++|..||.|..|.|.+|+. |.+||||||+|.+.++|.+||..|||+-+++..|+|+|++|.
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 3689999999999999999999999999999999999 999999999999999999999999999999999999999974
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.2e-14 Score=133.35 Aligned_cols=167 Identities=24% Similarity=0.388 Sum_probs=134.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKK 379 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~ 379 (731)
.+||++||+.+.+.+|..+|..||.|.++.+. .||+||+|.+..+|..|+-.||+..|.|..+.|.++....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 79999999999999999999999999998773 3689999999999999999999999999889999988543
Q ss_pred CCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhh
Q 037049 380 SSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGET 459 (731)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~ 459 (731)
......... ...+|...+
T Consensus 75 ~~~g~~~~g------------------------~r~~~~~~~-------------------------------------- 92 (216)
T KOG0106|consen 75 RGRGRPRGG------------------------DRRSDSRRY-------------------------------------- 92 (216)
T ss_pred cccCCCCCC------------------------Cccchhhcc--------------------------------------
Confidence 211000000 000000000
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCC
Q 037049 460 QVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLE 539 (731)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~ 539 (731)
.......+.++|.|++..+.+.+|...|.++|.+....+ ..+++||+|.+
T Consensus 93 ----------------------------~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 93 ----------------------------RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSE 142 (216)
T ss_pred ----------------------------CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehh
Confidence 003456788999999999999999999999999954444 68899999999
Q ss_pred HHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 540 PVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 540 ~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
.++|..|+..|+|..+.++.|.+....
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhhhhcchhccchhhcCceeeecccC
Confidence 999999999999999999999995554
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=7.2e-14 Score=131.63 Aligned_cols=79 Identities=30% Similarity=0.540 Sum_probs=73.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
|+||||+|+|.+..+.|+++|.+||.|++..|+.|+. |+|+|||||+|.+.+.|.+|++ -..-.|+||+-.|++|.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhhc
Confidence 6899999999999999999999999999999999999 9999999999999999999998 4455699999999998753
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 92 ~ 92 (247)
T KOG0149|consen 92 G 92 (247)
T ss_pred C
Confidence 3
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.9e-13 Score=127.93 Aligned_cols=85 Identities=32% Similarity=0.436 Sum_probs=81.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 294 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
.-.+.++|-|.|||.++++.+|+++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|||.-+..-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 037049 374 PARHK 378 (731)
Q Consensus 374 ~a~~~ 378 (731)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2.6e-13 Score=109.23 Aligned_cols=70 Identities=37% Similarity=0.693 Sum_probs=67.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 301 l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
|||+|||..+++++|+++|+.||.|..+.++.+. ++.++|||||.|.+.++|..|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-SGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-cccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999984 889999999999999999999999999999999985
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.1e-13 Score=109.75 Aligned_cols=70 Identities=37% Similarity=0.731 Sum_probs=65.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRIS 72 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~ 72 (731)
|||+|||+++++++|+++|+.||.|..|++..++.|.++|+|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998899999999999999999999999999999999875
No 72
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.44 E-value=7.1e-12 Score=133.84 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=69.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSE-VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
...+..|||.+||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||.|..++.+..|+..-+.+.++.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345668999999999999999999998767776 8887777 88899999999999999999997777777788899998
Q ss_pred ecCC
Q 037049 374 PARH 377 (731)
Q Consensus 374 ~a~~ 377 (731)
....
T Consensus 510 si~~ 513 (944)
T KOG4307|consen 510 SIAD 513 (944)
T ss_pred chhh
Confidence 6553
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.7e-13 Score=132.15 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
..+.|+|.||||...+-||+.+|.+||+ |.+|.|+.+. +| +||||||.|.++++|.+|.+.|||.+|.||+|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~---VldVEIIfNE---RG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGK---VLDVEIIFNE---RG-SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCc---eeeEEEEecc---CC-CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3356999999999999999999999999 9999999974 22 899999999999999999999999999999999
Q ss_pred EEeccCCc
Q 037049 694 LQLCHAKK 701 (731)
Q Consensus 694 v~~ak~~~ 701 (731)
|-.|-.+.
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 99998883
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=3.7e-13 Score=138.11 Aligned_cols=77 Identities=27% Similarity=0.419 Sum_probs=71.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCH--HHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTE--QEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~--~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
.|||||||++.++++||+.+|+.||.|..|.|++. .| ||||||+|.+. .++.+||..|||..|+|+.|+|+.|+|
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 38999999999999999999999999999999954 35 89999999987 789999999999999999999999997
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
.-
T Consensus 88 ~Y 89 (759)
T PLN03213 88 HY 89 (759)
T ss_pred HH
Confidence 43
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.9e-13 Score=129.26 Aligned_cols=170 Identities=22% Similarity=0.401 Sum_probs=131.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCC
Q 037049 496 VFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSST 575 (731)
Q Consensus 496 ~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 575 (731)
.+||++||+.+.+.+|..+|..||.+..+.+ ..||+||.|.+..+|.-|+.-|||..|.|-.+.|+|+..........
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~ 80 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP 80 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee--ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC
Confidence 5899999999999999999999999987776 46888999999999999999999999999999999996432221000
Q ss_pred CcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecC
Q 037049 576 SKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLK 655 (731)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~ 655 (731)
.+.. .... .. .-.......+.|+|.|++..+.+.+|.++|+.+|. +....+
T Consensus 81 -~~g~-----------r~~~-~~--------~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~---~~~~~~----- 131 (216)
T KOG0106|consen 81 -RGGD-----------RRSD-SR--------RYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE---VTYVDA----- 131 (216)
T ss_pred -CCCC-----------ccch-hh--------ccCCcccccceeeeccchhhhhHHHHhhhhcccCC---Cchhhh-----
Confidence 0000 0000 00 00011334466999999999999999999999998 644333
Q ss_pred CCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 656 NGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 656 ~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
.++++||+|.+.++|.+|+..|+|..+.|++|.+...-+..
T Consensus 132 -----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d~ 172 (216)
T KOG0106|consen 132 -----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRDR 172 (216)
T ss_pred -----hccccceeehhhhhhhhcchhccchhhcCceeeecccCcch
Confidence 24569999999999999999999999999999995554443
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4e-13 Score=120.62 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=71.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
|+|||+||+..+++.||...|..||+|.+|+|-+++ .|||||+|+++-+|+.|+..|+|..|.|..|+|+++....
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 689999999999999999999999999999998864 6999999999999999999999999999999999987543
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=128.68 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=70.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+.+|+++|+++|+.||.|.+|.|++++. ++|||||+|.++++|+.||. |||..|.|+.|+|.++...
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 4799999999999999999999999999999998853 57999999999999999996 9999999999999988753
No 78
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.1e-13 Score=112.07 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
|+|||+||+..++|+.|.++|+++|.|..|.|=.|+. ..+.|||||+|.+.++|..|++.++|..++.+.|+|.|.-.
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 6899999999999999999999999999999988988 77899999999999999999999999999999999998764
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=3.1e-12 Score=102.91 Aligned_cols=70 Identities=40% Similarity=0.759 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 301 LFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 301 l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
|||+|||+.+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999985 89999999999999999999999999999999884
No 80
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=123.36 Aligned_cols=80 Identities=33% Similarity=0.525 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
...+|||+||++.+..+.|+++|++||+|++..|+.|+.+|+++|||||+|.+.++|.+|++.- .-+|.||+-.|.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3458999999999999999999999999999999999999999999999999999999999443 578899999999887
Q ss_pred C
Q 037049 377 H 377 (731)
Q Consensus 377 ~ 377 (731)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 81
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.1e-12 Score=128.80 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=72.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
||+|+|||+..-+-||+.+|.+||+|.+|.|+.+.. -|||||||+|++.++|++|-.+|||..+.||+|.|+.|.++
T Consensus 98 RLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 98 RLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred eeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 899999999999999999999999999999999754 46899999999999999999999999999999999998854
No 82
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.7e-12 Score=110.19 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=79.5
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 294 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
....+++|||+||+..++++.|.++|+.+|+|..|.+-.|+.+..+.|||||.|.+.++|..|++.++|..+..+.|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 36778999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ecCC
Q 037049 374 PARH 377 (731)
Q Consensus 374 ~a~~ 377 (731)
|..-
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8753
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=9.1e-14 Score=125.07 Aligned_cols=75 Identities=32% Similarity=0.451 Sum_probs=72.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
|||||||+.+||.||.-+|++||.|++|.+++|+. |+|+||||+.|++..+.-.|+..|||..+.||.|+|....
T Consensus 38 Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 38 IYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 89999999999999999999999999999999998 9999999999999999999999999999999999998554
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2e-13 Score=122.85 Aligned_cols=91 Identities=30% Similarity=0.505 Sum_probs=83.6
Q ss_pred cchhcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCe
Q 037049 289 KDVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGR 368 (731)
Q Consensus 289 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~ 368 (731)
.+...+.-++.-|||+|||+.+|+.||.-.|++||.|..|.+++|..||+++||||+.|.+..+..-|++.|||..|.||
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 34555677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 037049 369 LLHVMPARHKK 379 (731)
Q Consensus 369 ~l~V~~a~~~~ 379 (731)
.|+|.......
T Consensus 106 tirVDHv~~Yk 116 (219)
T KOG0126|consen 106 TIRVDHVSNYK 116 (219)
T ss_pred eEEeeeccccc
Confidence 99998765443
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=2e-12 Score=118.89 Aligned_cols=84 Identities=26% Similarity=0.455 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
....+|.|.||.+.+|.++|+.+|++||. |-+|.|+.+..+.+ ++|||||.|....+|+.|+..|.|.+|.|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~---vgDVyIPrdr~Tr~--sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGR---VGDVYIPRDRYTRQ--SRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCc---ccceeccccccccc--ccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 34456999999999999999999999999 99999999986655 99999999999999999999999999999999
Q ss_pred EEEeccCCc
Q 037049 693 ILQLCHAKK 701 (731)
Q Consensus 693 ~v~~ak~~~ 701 (731)
.|.+|+-..
T Consensus 86 rVq~arygr 94 (256)
T KOG4207|consen 86 RVQMARYGR 94 (256)
T ss_pred eehhhhcCC
Confidence 999996543
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=127.83 Aligned_cols=78 Identities=37% Similarity=0.618 Sum_probs=74.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+.+|+++|.++|.+||.|..|.|..++. |+++|||||+|.+.++|..|+..++|..|.|+.|+|.++.+
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4799999999999999999999999999999999975 99999999999999999999999999999999999998763
No 87
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=7.4e-12 Score=122.88 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=71.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..|| .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 46999999999999999999999999999999998763 5799999999999999999 6999999999999999874
Q ss_pred C
Q 037049 378 K 378 (731)
Q Consensus 378 ~ 378 (731)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=8.6e-12 Score=101.81 Aligned_cols=79 Identities=23% Similarity=0.481 Sum_probs=71.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 037049 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694 (731)
Q Consensus 615 ~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v 694 (731)
++.|||+|||+.+|.++..++|.+||. |+.++|=..+. .+|.|||.|.+..+|.+|+..|+|+.+.++.|.|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~---IrQIRiG~~k~-----TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGT---IRQIRIGNTKE-----TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccc---eEEEEecCccC-----cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 456999999999999999999999999 99999987652 6899999999999999999999999999999999
Q ss_pred EeccCCc
Q 037049 695 QLCHAKK 701 (731)
Q Consensus 695 ~~ak~~~ 701 (731)
-+=.+-.
T Consensus 90 lyyq~~~ 96 (124)
T KOG0114|consen 90 LYYQPED 96 (124)
T ss_pred EecCHHH
Confidence 9876554
No 89
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.5e-12 Score=113.93 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
-.+.|||.||+..+++.+|..+|..||+ |.+|+|..+ +.|||||+|.++.+|..|+..|+|+.|+|..|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~---lrsvWvArn-------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGP---LRSVWVARN-------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCc---ceeEEEeec-------CCCceEEeccCcccHHHHHhhcCCccccCceEE
Confidence 4577999999999999999999999999 999999996 689999999999999999999999999999999
Q ss_pred EEeccCCch
Q 037049 694 LQLCHAKKD 702 (731)
Q Consensus 694 v~~ak~~~~ 702 (731)
|+++.....
T Consensus 79 VE~S~G~~r 87 (195)
T KOG0107|consen 79 VELSTGRPR 87 (195)
T ss_pred EEeecCCcc
Confidence 999976654
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1e-11 Score=99.87 Aligned_cols=72 Identities=39% Similarity=0.630 Sum_probs=67.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCE 74 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~ 74 (731)
+|||+|||..++.++|+++|.+||.|..+.++.++ +.++|+|||+|.+.++|+.|+..++|..+.|++|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999887 7888999999999999999999999999999998863
No 91
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.29 E-value=3.4e-12 Score=117.37 Aligned_cols=84 Identities=36% Similarity=0.549 Sum_probs=79.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
+....+|.|-||-+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.|++.|+|.++.|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 55566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 037049 375 ARHK 378 (731)
Q Consensus 375 a~~~ 378 (731)
|.-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8754
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=2.5e-11 Score=126.33 Aligned_cols=80 Identities=46% Similarity=0.740 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
.++|||+|||+.+++++|..+|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999764
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.4e-11 Score=118.84 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=68.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
+|||+||++.+|+++|+++|+.||.|.+|+|+++ ++++|||||+|.+++.|+.|+. |+|..|.+++|.|..+.
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 6999999999999999999999999999999998 5666899999999999999996 99999999999998654
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=1.3e-11 Score=126.99 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=71.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCH--HHHHHHHHHcCCcccCCeEEEEEe
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIP--ESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~--e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+||||||++.+++++|..+|..||.|..|.|++ .+| ||||||.|... .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 345899999999999999999999999999999994 367 99999999987 789999999999999999999999
Q ss_pred cCCC
Q 037049 375 ARHK 378 (731)
Q Consensus 375 a~~~ 378 (731)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.1e-12 Score=118.43 Aligned_cols=86 Identities=27% Similarity=0.473 Sum_probs=82.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||++|...+++.-|...|=+||.|.+|.++.|..++++||||||+|...|||..||+.||+..+.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
|.|.+.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998654
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1e-11 Score=106.33 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=75.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
|||.++...+||++|...|..||+|.+|++..|+. |..+|||+|+|.+.++|+.||..+||..+.|..|.|.|+.-..
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 89999999999999999999999999999999987 9999999999999999999999999999999999999998654
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=119.49 Aligned_cols=78 Identities=31% Similarity=0.460 Sum_probs=74.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+.|+++++|..|+..|..||+|..|+|++|+- |+++|||||+|+...+...|.+..+|..|+|+.|.|.+-..
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 4799999999999999999999999999999999987 99999999999999999999999999999999999988664
No 98
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.7e-11 Score=119.23 Aligned_cols=83 Identities=31% Similarity=0.468 Sum_probs=78.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
-+-+||||+-|++.+++..|+..|+.||+|..|+|++|..||+++|||||+|.+..+...|.+..+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 037049 376 RHK 378 (731)
Q Consensus 376 ~~~ 378 (731)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 644
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=4.3e-11 Score=97.77 Aligned_cols=81 Identities=27% Similarity=0.456 Sum_probs=73.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...++-|||+|||+.+|.++..++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..+.++.|.|.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 4556789999999999999999999999999999996644 3689999999999999999999999999999999999
Q ss_pred cCCC
Q 037049 375 ARHK 378 (731)
Q Consensus 375 a~~~ 378 (731)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 8754
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=3.4e-11 Score=96.41 Aligned_cols=70 Identities=44% Similarity=0.725 Sum_probs=66.2
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 037049 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCE 74 (731)
Q Consensus 5 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~ 74 (731)
|+|||..+++++|+.+|..||.|..+.+..++. +.++|||||+|.+.++|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999999886 8999999999999999999999999999999998873
No 101
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.9e-11 Score=104.58 Aligned_cols=86 Identities=27% Similarity=0.419 Sum_probs=81.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+-.|||.++...+++++|...|..||+|..|.+-.|+.||..+|||+|+|.+.+.|+.|+..+||..+.|++|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+..+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 986544
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=7.3e-11 Score=95.40 Aligned_cols=74 Identities=38% Similarity=0.634 Sum_probs=69.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEI 75 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~ 75 (731)
+|+|+|||+.+++++|+++|+.||.|..+.+..++.+.++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999987777889999999999999999999999999999998863
No 103
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=5.3e-11 Score=114.81 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=70.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
.+.+|||+||++.+|+++|++||+.||.|.+|+|++|. ..+|||||+|.++++|..|+ .|+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45699999999999999999999999999999999874 45689999999999999999 999999999999998876
Q ss_pred C
Q 037049 377 H 377 (731)
Q Consensus 377 ~ 377 (731)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 104
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.7e-10 Score=121.83 Aligned_cols=72 Identities=26% Similarity=0.495 Sum_probs=65.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
....++|+|-|||..+++++|+.+|+.||+|..|+.. -..+|..||+|.+..+|++|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4566899999999999999999999999999997663 34578999999999999999999999999999888
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=7.8e-11 Score=94.65 Aligned_cols=72 Identities=46% Similarity=0.696 Sum_probs=67.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
+|||+|||..++.++|+++|..||.|..+.+..+. +.++|+|||.|.+.++|..|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 6789999999999999999999999999999998873
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.6e-12 Score=115.24 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=79.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
...++|||.+|...+|+.-|...|-+||. |..|+|+.+..+++ +||||||+|.-.++|..||..||+..|.||.|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGD---I~dIqiPlDyesqk--HRgFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGD---IKDIQIPLDYESQK--HRGFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccc---hhhcccccchhccc--ccceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 35578999999999999999999999999 99999999987766 99999999999999999999999999999999
Q ss_pred EEEeccCCch
Q 037049 693 ILQLCHAKKD 702 (731)
Q Consensus 693 ~v~~ak~~~~ 702 (731)
+|-||+|-..
T Consensus 83 rVN~AkP~ki 92 (298)
T KOG0111|consen 83 RVNLAKPEKI 92 (298)
T ss_pred EEeecCCccc
Confidence 9999988763
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=93.02 Aligned_cols=71 Identities=49% Similarity=0.739 Sum_probs=66.9
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 303 VRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 303 v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
|+|||..+++++|+.+|..||.|..+.+..++.++.++|||||.|.+.++|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988778899999999999999999999999999999998873
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.15 E-value=7.3e-11 Score=125.82 Aligned_cols=78 Identities=28% Similarity=0.483 Sum_probs=75.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
+.|||||||+++++++|..+|+..|.|.+++++.|+. |+++||||++|.+.++|.+|++.|||..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 4699999999999999999999999999999999998 99999999999999999999999999999999999998874
No 109
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=124.41 Aligned_cols=84 Identities=31% Similarity=0.529 Sum_probs=79.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~ 695 (731)
+++||+|+|+.+++++|.++|+..|. |.++++..|+.+|+ ++||||++|.+.++|.+|++.|||..+.||+|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~---v~s~~~v~D~~tG~--~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGP---VLSFRLVYDRETGK--PKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCc---cceeeecccccCCC--cCceeeEecCchhhHHHHHHhcCCcccCCceEEee
Confidence 78999999999999999999999999 99999999998877 99999999999999999999999999999999999
Q ss_pred eccCCchhh
Q 037049 696 LCHAKKDEQ 704 (731)
Q Consensus 696 ~ak~~~~~~ 704 (731)
|+.......
T Consensus 94 ~~~~~~~~~ 102 (435)
T KOG0108|consen 94 YASNRKNAE 102 (435)
T ss_pred cccccchhH
Confidence 998776543
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5.1e-10 Score=90.35 Aligned_cols=74 Identities=50% Similarity=0.718 Sum_probs=68.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
+|+|+|||..+++++|+++|..+|.|..+.+..++. +.++|+|||.|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998873 46799999999999999999999999999999999864
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.8e-10 Score=86.89 Aligned_cols=55 Identities=33% Similarity=0.550 Sum_probs=51.7
Q ss_pred HHHHhcccCceeEEEccCCC-CEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 511 LAKMFGKFGSLDKVILPSTK-TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 511 L~~~F~~~G~i~~v~l~~~k-g~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
|+++|++||.|.++.+.+.+ ++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999877 99999999999999999999999999999999986
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.7e-09 Score=113.50 Aligned_cols=64 Identities=30% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHH
Q 037049 296 LESGRLFVRNLPYTATEDELREHFS-KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEV 359 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~ 359 (731)
...+|||||+||..++.++|..+|. -||.|..+-|=.|+.-+.++|-|=|.|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3456999999999999999999999 599999999999987899999999999999999999954
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=4.7e-10 Score=85.65 Aligned_cols=56 Identities=32% Similarity=0.540 Sum_probs=50.9
Q ss_pred HHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Q 037049 632 LRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697 (731)
Q Consensus 632 L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~a 697 (731)
|+++|++||+ |..+.+... .+|+|||+|.+.++|.+|+..|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~---V~~i~~~~~-------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGE---VKKIKIFKK-------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS----EEEEEEETT-------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCccc---EEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6899999999 999999874 2589999999999999999999999999999999996
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.07 E-value=2.3e-09 Score=115.11 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=128.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcccC----ceeEEEccCC-CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 492 RSNHVFLVKNLPYDSSEGELAKMFGKFG----SLDKVILPST-KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 492 ~~~~~l~V~NLp~~~te~~L~~~F~~~G----~i~~v~l~~~-kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
...+.+-+++++.+.+..+++++|...- .|..-++-++ .|.++|.|....+++.|+.+ |...+-.|.+.+..+-
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 4556777889999999999999997431 2222233344 78999999999999999976 6677889999998886
Q ss_pred CCccccCCCCcCCCCCccc---ccchhhHhhhHHhhhhcCCCCCC--CCCCCCCCeEEEeCCCCCCCHHHHHHHhccccC
Q 037049 567 SDVLSQSSTSKGNQKNDAV---VGEHDAKRALLEQQLEGVTDADI--DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIK 641 (731)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~ 641 (731)
...|.-...-.....+... .+......+. ..-.+. .....-+.+|||..||+.+++.++.++|....-
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~-------~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRA-------MVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCccc-------ccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 5544332221111000000 0000000000 000011 112233567999999999999999999987765
Q ss_pred cccEEE-EEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Q 037049 642 EGRILS-VKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697 (731)
Q Consensus 642 ~~~I~~-vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~a 697 (731)
|.. |.|-+- +++. -++-|||.|...+++.+|...-+-+.++.|.|+|.-.
T Consensus 461 ---Ved~I~lt~~-P~~~--~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 461 ---VEDFIELTRL-PTDL--LRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ---hhheeEeccC-Cccc--ccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 666 444333 3433 7889999999999999999988888889999999755
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=8.3e-10 Score=88.45 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=54.2
Q ss_pred HHHHHHHhc----cccCcccEEEEE-EeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 037049 629 DENLRKHFG----EHIKEGRILSVK-VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695 (731)
Q Consensus 629 ee~L~~~F~----~~G~~~~I~~vk-i~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~ 695 (731)
+++|+++|+ .||. |.++. |+.++.+-.+.++|||||.|.+.++|.+|+..|||+.+.||.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~---v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGE---VGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCC---eeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 9998 99985 6666534113489999999999999999999999999999999873
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.8e-09 Score=86.52 Aligned_cols=62 Identities=29% Similarity=0.584 Sum_probs=55.7
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeeeCCC--CCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 312 EDELREHFS----KFGNVSEVH-IVVDKDT--KRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 312 ~~~l~~~F~----~~G~i~~i~-i~~d~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||.|.+.++|..|+..|||..+.|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999995 7776656 8899999999999999999999999999999999863
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=2.5e-09 Score=99.43 Aligned_cols=77 Identities=27% Similarity=0.483 Sum_probs=72.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhcC-CCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQK-GEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
+||..+|..+.+.+|..+|.+| |.|..+++.|++. |.|+|||||+|++++.|.-|-+.||++.|+++-|.|.+--|.
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 7899999999999999999999 7888888889887 999999999999999999999999999999999999987764
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.5e-10 Score=127.56 Aligned_cols=239 Identities=18% Similarity=0.143 Sum_probs=183.8
Q ss_pred CCCCeEEEeCCCCCCCHH-HHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 296 LESGRLFVRNLPYTATED-ELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~-~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
.......+.++-+..... ..+..|..+|.|..|++......-....++++.+....++..|. ...+.-+.++.+.|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCC
Confidence 344567777887776555 56789999999999988753322222238899999999999999 6778888888888887
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
+.+...... ..++..
T Consensus 648 ad~~~~~~~-----------~kvs~n------------------------------------------------------ 662 (881)
T KOG0128|consen 648 ADAEEKEEN-----------FKVSPN------------------------------------------------------ 662 (881)
T ss_pred CCchhhhhc-----------cCcCch------------------------------------------------------
Confidence 775431000 000000
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------C
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------S 528 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~ 528 (731)
..+...++||+||+..+.+.+|...|..+|.+..+.+. +
T Consensus 663 -----------------------------------~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~ 707 (881)
T KOG0128|consen 663 -----------------------------------EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKR 707 (881)
T ss_pred -----------------------------------HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccc
Confidence 11223468999999999999999999999988766443 4
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCC
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADI 608 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (731)
.+|+|+|.|..+++|.+|+....++.++ +
T Consensus 708 ~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-----------K---------------------------------------- 736 (881)
T KOG0128|consen 708 FRGKAYVEFLKPEHAGAAVAFRDSCFFG-----------K---------------------------------------- 736 (881)
T ss_pred cccceeeEeecCCchhhhhhhhhhhhhh-----------h----------------------------------------
Confidence 6799999999999999999765544443 0
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC
Q 037049 609 DPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688 (731)
Q Consensus 609 ~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~ 688 (731)
..|+|+|.|+..|.++|+.+|..+|. +.+.+++..+ .|+ ++|.|||.|.+..+|.+++..+....+.
T Consensus 737 -------~~v~i~g~pf~gt~e~~k~l~~~~gn---~~~~~~vt~r-~gk--pkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 737 -------ISVAISGPPFQGTKEELKSLASKTGN---VTSLRLVTVR-AGK--PKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred -------hhhheeCCCCCCchHHHHhhccccCC---ccccchhhhh-ccc--cccceeccCCCcchhhhhcccchhhhhh
Confidence 14999999999999999999999999 9999888766 344 8999999999999999999999988888
Q ss_pred CcEEEEEeccC
Q 037049 689 GHALILQLCHA 699 (731)
Q Consensus 689 Gr~l~v~~ak~ 699 (731)
-+.+.|..+.+
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 88888888665
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=4.1e-10 Score=104.76 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCE 74 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~ 74 (731)
+|||+|+...++|+-|.++|-+-|+|..|.|..+++++.+ ||||.|.+...+..|++.+||..+.+..+.|.
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 5899999999999999999999999999999999998887 99999999999999999999998888877666
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9.2e-10 Score=109.22 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=79.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
.++...|||.-|.+-++.++|.-+|++||.|.+|.|++|..||.+..||||+|.+.+++.+|.-.|++..|..+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 037049 375 ARHK 378 (731)
Q Consensus 375 a~~~ 378 (731)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8753
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=94.93 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=76.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
......++|..+|+.+.+.+|..+|.+|| |+|+.+++-+++.+|. ++|||||+|.+.+.|.-|-..||++.+.|+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGN--SKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGN--SKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCC--cCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 33445699999999999999999999995 3488888888887776 9999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 037049 692 LILQLCHAK 700 (731)
Q Consensus 692 l~v~~ak~~ 700 (731)
|.|.+-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999999887
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.85 E-value=2.2e-09 Score=102.46 Aligned_cols=79 Identities=25% Similarity=0.447 Sum_probs=74.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
+||++.|...++.+.|-..|.+|-.....++++|..||+++||+||.|.++.++..|+..|+|..++.+.|.++.+..+
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 8999999999999999999999988888999999999999999999999999999999999999999999988776544
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=3.2e-10 Score=125.10 Aligned_cols=144 Identities=25% Similarity=0.361 Sum_probs=120.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
..+.+++||+||++.+.+.+|...|..+|.+..+++......++.+|+|||.|..++++.+|+....+.. .|
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~g------- 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FG------- 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hh-------
Confidence 3455689999999999999999999999988888776555578899999999999999999994443322 22
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc-----CC
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP-----ST 529 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~-----~~ 529 (731)
...++|+|.|+.-|.++|+.+|+.+|.+....++ +.
T Consensus 736 ---------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp 776 (881)
T KOG0128|consen 736 ---------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP 776 (881)
T ss_pred ---------------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc
Confidence 0137899999999999999999999999988665 47
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 530 kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
+|.|+|.|.+..+|.++...+++..+.-+.+.|...
T Consensus 777 kg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 777 KGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred ccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 899999999999999999988888877666666654
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=1.6e-08 Score=107.28 Aligned_cols=67 Identities=33% Similarity=0.508 Sum_probs=61.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRIS 72 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~ 72 (731)
.|+|-|||..+++++|+.+|+.||.|..|+.-+.+ +|.+||+|.+.-+|+.|++.|++..+.|++|+
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 58999999999999999999999999997765543 68999999999999999999999999999987
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=1.8e-08 Score=105.79 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=72.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
+|||.+|+..+-..||+.+|++||.|+..+|+++.. --.++|+||++.+..+|.+||+.|+.+.|+|+.|.|+.++..
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 599999999999999999999999999999999865 455899999999999999999999999999999999998853
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-08 Score=100.30 Aligned_cols=79 Identities=28% Similarity=0.481 Sum_probs=75.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
-|||--|.+-+|.+||.-+|+.||+|.+|.|++|+. |-+..||||+|.+.+++++|.=.|++..|+.++|.|.++....
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred eEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 489999999999999999999999999999999988 9999999999999999999999999999999999999987643
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.70 E-value=1.7e-08 Score=103.22 Aligned_cols=174 Identities=21% Similarity=0.232 Sum_probs=133.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc------CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP------STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~------~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
..+++|++++-.++.+.++..++..+|....+.+. ++++++.+.|...+.+..|+.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999888899999999976654332 578999999999999999997644445666555544443
Q ss_pred CCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCe-EEEeCCCCCCCHHHHHHHhccccCcccE
Q 037049 567 SDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRS-LFVKNLNFKTCDENLRKHFGEHIKEGRI 645 (731)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~V~NLp~~~tee~L~~~F~~~G~~~~I 645 (731)
......... .......+..+ ++|.||++.+++++|+.+|..+|. |
T Consensus 167 ~~~~~~~n~-------------------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~---i 212 (285)
T KOG4210|consen 167 RRGLRPKNK-------------------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE---I 212 (285)
T ss_pred cccccccch-------------------------------hcccccCccccceeecccccccchHHHhhhccCcCc---c
Confidence 221000000 00001223334 459999999999999999999998 9
Q ss_pred EEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchh
Q 037049 646 LSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDE 703 (731)
Q Consensus 646 ~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~ 703 (731)
..++++.+..++. .+|||||.|.....+..|+.. ++..+.|+++.+.+.+++.+.
T Consensus 213 ~~~r~~~~~~s~~--~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 213 TSVRLPTDEESGD--SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred eeeccCCCCCccc--hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 9999999876655 899999999999999999998 999999999999999988654
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=5.8e-08 Score=95.40 Aligned_cols=78 Identities=28% Similarity=0.444 Sum_probs=74.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|+|.|||+.++++||+++|..||.+..+-|..++.|++.|.|-|.|...++|..|++.+||..++|+.|++.+..+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998765
No 129
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.67 E-value=4.2e-08 Score=107.23 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=71.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++||||+||..++|.||..+|+.||.|.+|.++.. ||||||.+....+|.+|+..|+...+.++.|+|.|+....
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 48999999999999999999999999999999887 8999999999999999999999999999999999998654
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.66 E-value=2.4e-08 Score=102.16 Aligned_cols=80 Identities=29% Similarity=0.506 Sum_probs=73.8
Q ss_pred eEE-EeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 300 RLF-VRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 300 ~l~-v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
++| |++|+..++.++|+.+|..+|.|..+++..++.++..+|||||.|.....+..++.. +...+.|+.+.+.+..+.
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 555 999999999999999999999999999999999999999999999999999999966 788999999999998876
Q ss_pred CC
Q 037049 379 KS 380 (731)
Q Consensus 379 ~~ 380 (731)
..
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 44
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.66 E-value=1.6e-08 Score=96.61 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=112.5
Q ss_pred HHHhcccCceeEEEccC-----CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccc
Q 037049 512 AKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVV 586 (731)
Q Consensus 512 ~~~F~~~G~i~~v~l~~-----~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~ 586 (731)
...|+.|-.+....+.+ -.+++|+.|.....-.++-..-+++.++.+.|++.-+. .|.....
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt--swedPsl----------- 183 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT--SWEDPSL----------- 183 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc--ccCCccc-----------
Confidence 45556555554444442 46799999988777767666666666766665444332 2222211
Q ss_pred cchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEE
Q 037049 587 GEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGF 666 (731)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~af 666 (731)
-++...-..||.+.|-..++++-|.+.|.+|-. +...++.+++.+|+ ++||+|
T Consensus 184 ----------------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps---f~~akviRdkRTgK--Skgygf 236 (290)
T KOG0226|consen 184 ----------------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS---FQKAKVIRDKRTGK--SKGYGF 236 (290)
T ss_pred ----------------------ccCccccceeecccccccccHHHHHHHHHhccc---hhhccccccccccc--ccccee
Confidence 013334457999999999999999999999998 99999999988877 999999
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 667 IEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 667 V~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
|.|.++.++..|+..|+|..++.|+|++.-+.-++
T Consensus 237 VSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 237 VSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred eeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999999999999987664444
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=3.3e-08 Score=106.80 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=91.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeec-CCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL-KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~-~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
.+.+++|||.||+..++++.|...|..||+ |.+++||..+ ...+.+.+-.|||.|-+..+|.+|++.|+|..+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgP---lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGP---LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCc---ccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 445677999999999999999999999999 9999999977 333445677899999999999999999999999999
Q ss_pred EEEEEeccCCchhhHHhhhc--cCCCCceEEEeeccceeeec
Q 037049 691 ALILQLCHAKKDEQVVKKAE--KDKSSTKLLVRNVAFEAQRK 730 (731)
Q Consensus 691 ~l~v~~ak~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~~~ 730 (731)
.+++.|++.-...+...-.. -+.-..-+.=.||||+|+.+
T Consensus 248 e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~ 289 (877)
T KOG0151|consen 248 EMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPG 289 (877)
T ss_pred eeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCC
Confidence 99999997766432211111 11122333456899998764
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=7.7e-08 Score=96.14 Aligned_cols=77 Identities=19% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHH-HHhCCCccCCc
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVC-RDLQGTILDGH 690 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai-~~lng~~i~Gr 690 (731)
.....+|||++|-..+++.+|+++|.+||+ |+++.+... +|.|||.|.+.++|+.|. +.+|...|+|+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGe---irsi~~~~~--------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGE---IRSIRILPR--------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCC---eeeEEeecc--------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 344567999999999999999999999999 999999973 568999999999999985 55677788999
Q ss_pred EEEEEeccC
Q 037049 691 ALILQLCHA 699 (731)
Q Consensus 691 ~l~v~~ak~ 699 (731)
+|.|.|+++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999999
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.62 E-value=5.1e-08 Score=105.37 Aligned_cols=85 Identities=25% Similarity=0.394 Sum_probs=77.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD----GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
|+|||+||++.+++..|...|++||+|.+|+||..+. .+.+-||||.|.+..+|++|++.|+|..+.+..+++.|+
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 5899999999999999999999999999999999876 456789999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 037049 77 RKVGDPNMP 85 (731)
Q Consensus 77 ~~~~~~~~~ 85 (731)
++...++.|
T Consensus 255 k~V~ip~~p 263 (877)
T KOG0151|consen 255 KAVPIPNIP 263 (877)
T ss_pred cccccCCcc
Confidence 776555443
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.62 E-value=3.3e-07 Score=76.98 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=75.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc----CCcE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL----DGHA 691 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i----~Gr~ 691 (731)
+||.|+|||...|.+.|.+++..... |.+..+.++.|..++ .+.|||||.|.+++.|.+-...+||+.+ ..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~-g~yDF~YLPiDf~~~--~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK-GKYDFFYLPIDFKNK--CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc-CcceEEEeeeeccCC--CceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 58999999999999999999977644 779999999998543 3899999999999999999999999988 4788
Q ss_pred EEEEeccCCchhh
Q 037049 692 LILQLCHAKKDEQ 704 (731)
Q Consensus 692 l~v~~ak~~~~~~ 704 (731)
..|.+|+-+...+
T Consensus 79 c~i~yAriQG~~a 91 (97)
T PF04059_consen 79 CEISYARIQGKDA 91 (97)
T ss_pred EEEehhHhhCHHH
Confidence 8999998776653
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=7.8e-08 Score=96.08 Aligned_cols=73 Identities=29% Similarity=0.443 Sum_probs=66.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF-NKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~-~g~~~~g~~i~v~~a~~ 78 (731)
++|||++|-..++|.+|+++|-+||.|.+|.++.. +|||||+|.+.+.|+.|.... |...++|.+|+|.|..+
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 47999999889999999999999999999999887 689999999999999999864 55668899999999886
No 137
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=7.3e-08 Score=105.40 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCC
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~ 567 (731)
-++||||++|+.++++.+|.++|+.||.|.+|.+..++++|||.+....+|.+|+.+|++..+.++.|+|.||..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999964
No 138
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=6.7e-07 Score=94.34 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=112.9
Q ss_pred hhcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeC-CCC--Ccee---EEEEEecCHHHHHHHHHHcCCcc
Q 037049 291 VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK-DTK--RSKG---IAYVLYAIPESASRAIEVLDNSI 364 (731)
Q Consensus 291 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~-~~g--~~~g---~afV~F~~~e~A~~Al~~l~~~~ 364 (731)
......-+++|||++||++++++.|...|..||.+ .|...... ..+ -++| |+|+.|.++.++..-|..+.
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~--- 327 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS--- 327 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---
Confidence 34446678899999999999999999999999975 33333211 011 2456 99999999988877665542
Q ss_pred cCCeEEEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccC
Q 037049 365 FQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLD 444 (731)
Q Consensus 365 ~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 444 (731)
.....+.+..+.+......- ....|...-..
T Consensus 328 ~~~~~~yf~vss~~~k~k~V----------------------------QIrPW~laDs~--------------------- 358 (520)
T KOG0129|consen 328 EGEGNYYFKVSSPTIKDKEV----------------------------QIRPWVLADSD--------------------- 358 (520)
T ss_pred hcccceEEEEecCcccccce----------------------------eEEeeEeccch---------------------
Confidence 24444444444432211000 00111100000
Q ss_pred cccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhc-ccCceeE
Q 037049 445 REANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFG-KFGSLDK 523 (731)
Q Consensus 445 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~-~~G~i~~ 523 (731)
+... . .....+.+||||++||-.++-++|..+|. -||.|+.
T Consensus 359 -----------------------fv~d-------~--------sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~y 400 (520)
T KOG0129|consen 359 -----------------------FVLD-------H--------NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY 400 (520)
T ss_pred -----------------------hhhc-------c--------CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEE
Confidence 0000 0 00345678999999999999999999999 8999998
Q ss_pred EEccC------CCCEEEEEeCCHHHHHHHHHh
Q 037049 524 VILPS------TKTLALVVFLEPVEAAAAFKG 549 (731)
Q Consensus 524 v~l~~------~kg~afV~F~~~e~A~~Ai~~ 549 (731)
+-|.. .+|-|=|.|.+..+-.+||.+
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 87763 589999999999999999975
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.54 E-value=3.3e-07 Score=96.53 Aligned_cols=88 Identities=23% Similarity=0.409 Sum_probs=79.7
Q ss_pred hhcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEE
Q 037049 291 VQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370 (731)
Q Consensus 291 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l 370 (731)
......-++.|||.+|...+...+|+.+|++||.|...+|+.+..+.-.+.|+||++.+..+|.+||..|+...|.|+.|
T Consensus 398 ekgrs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmI 477 (940)
T KOG4661|consen 398 EKGRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMI 477 (940)
T ss_pred cccccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceee
Confidence 33445667899999999999999999999999999999999987777788999999999999999999999999999999
Q ss_pred EEEecCCC
Q 037049 371 HVMPARHK 378 (731)
Q Consensus 371 ~V~~a~~~ 378 (731)
.|..++..
T Consensus 478 SVEkaKNE 485 (940)
T KOG4661|consen 478 SVEKAKNE 485 (940)
T ss_pred eeeecccC
Confidence 99988753
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=5.5e-08 Score=108.16 Aligned_cols=164 Identities=20% Similarity=0.200 Sum_probs=136.0
Q ss_pred chhcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeE
Q 037049 290 DVQQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRL 369 (731)
Q Consensus 290 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~ 369 (731)
....+...+.+||++||+..+++.+|+..|..+|.|..|.|-+-+ -+.-..||||.|.+...+-.|...+.+..|..-.
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 345567778999999999999999999999999999999886543 4455679999999999999999888777666444
Q ss_pred EEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccch
Q 037049 370 LHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND 449 (731)
Q Consensus 370 l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 449 (731)
+++.+..+
T Consensus 443 ~r~glG~~------------------------------------------------------------------------ 450 (975)
T KOG0112|consen 443 HRIGLGQP------------------------------------------------------------------------ 450 (975)
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 44444332
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCC
Q 037049 450 LAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST 529 (731)
Q Consensus 450 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~ 529 (731)
.....+.+++++|+.-+....|...|..||.|..|.+...
T Consensus 451 ----------------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg 490 (975)
T KOG0112|consen 451 ----------------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG 490 (975)
T ss_pred ----------------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC
Confidence 1223457899999998899999999999999999988777
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccCC--ceEEEEeCC
Q 037049 530 KTLALVVFLEPVEAAAAFKGLAYKRYKG--VPLYLEWAP 566 (731)
Q Consensus 530 kg~afV~F~~~e~A~~Ai~~lng~~~~g--r~l~v~~a~ 566 (731)
-.||+|.|.+...|++|+..|-|..|+| +.|.|.+|.
T Consensus 491 q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 491 QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 7899999999999999999999999984 678888885
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.52 E-value=4.8e-07 Score=71.80 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=49.2
Q ss_pred CeEEEeCCCCCCCH----HHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 616 RSLFVKNLNFKTCD----ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 616 ~~L~V~NLp~~~te----e~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
+.|+|.|||...+. ..|+.++..||. +|..| +.|.|+|.|.+.+.|.+|.+.|+|..+.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG--kVl~v------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG--KVLSV------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT----EEE--------------TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC--EEEEE------------eCCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 35999999998875 556777778885 56554 3355999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|+|.....+
T Consensus 69 I~v~~~~~~r~ 79 (90)
T PF11608_consen 69 ISVSFSPKNRE 79 (90)
T ss_dssp -EEESS--S--
T ss_pred EEEEEcCCccc
Confidence 99999955443
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=9.5e-08 Score=106.32 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=66.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEec
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPA 375 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a 375 (731)
...+|+++|+.-+....|...|..||.|..|.+-. .-.||||.|.+...|+.|+..+-|..|+| +.|+|.++
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 34799999999999999999999999998876532 24599999999999999999999999986 78999998
Q ss_pred CCCCC
Q 037049 376 RHKKS 380 (731)
Q Consensus 376 ~~~~~ 380 (731)
.+...
T Consensus 529 ~~~~~ 533 (975)
T KOG0112|consen 529 SPPGA 533 (975)
T ss_pred cCCCC
Confidence 86543
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=1.2e-06 Score=73.63 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=71.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhc--CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC----CeEEEE
Q 037049 299 GRLFVRNLPYTATEDELREHFSK--FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ----GRLLHV 372 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~--~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~----g~~l~V 372 (731)
+||.|+|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 48999999999999999988876 467888999999989999999999999999999999999998886 577888
Q ss_pred EecCC
Q 037049 373 MPARH 377 (731)
Q Consensus 373 ~~a~~ 377 (731)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 98874
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.36 E-value=1.2e-06 Score=86.17 Aligned_cols=81 Identities=27% Similarity=0.478 Sum_probs=75.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
.+|+|.|||+.+++++|+++|..||.+..+.|..++ +|.+.|.|-|.|...+||..|++.++|..+.|+.|.+....+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 489999999999999999999999999999999998 8999999999999999999999999999999999999887754
Q ss_pred CC
Q 037049 379 KS 380 (731)
Q Consensus 379 ~~ 380 (731)
..
T Consensus 163 ~~ 164 (243)
T KOG0533|consen 163 SQ 164 (243)
T ss_pred cc
Confidence 43
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=1.3e-07 Score=88.46 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=71.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|+-..++++-|.++|=..|+|..|.|..++ .+..+ ||||.|.+.-+..-|++.+||..+.++.+.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3445699999999999999999999999999999998877 66667 999999999999999999999999999888776
Q ss_pred cC
Q 037049 375 AR 376 (731)
Q Consensus 375 a~ 376 (731)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=9.7e-07 Score=94.02 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=69.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
.|||+|||.+++..+|+++|..||.|....|.... .+++.+||||+|.+...++.||. .+-..++++++.|+..++..
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccccc
Confidence 48999999999999999999999999999887644 35555999999999999999998 66778899999999887654
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
+
T Consensus 369 ~ 369 (419)
T KOG0116|consen 369 R 369 (419)
T ss_pred c
Confidence 3
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.26 E-value=1.3e-06 Score=86.47 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=72.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
.+||+|+.+.+|-+++..+|..||.|..|.|+.++. |.++|||||+|.+.+.+..|+. |+|..+.|+.|.|.+.+-
T Consensus 103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 689999999999999999999999999999999999 7899999999999999999999 999999999999987764
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.19 E-value=1.9e-06 Score=87.28 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=124.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCC---CCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDT---KRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
+.|.|.||.++++.++++.+|.-.|.|..+.|+..... ......|||.|.+...+..|- .|.++.|-++.|.|.++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999999874422 134668999999999988887 88889999998888876
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHH--HHHhcCCCcccccCcccchHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVEN--IARKHGVSKSDLLDREANDLAVR 453 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~a~~ 453 (731)
-....+....+ ....+..+..-+ ..++.++.. .....+..+..++....-++.
T Consensus 87 ~~~~~p~r~af----------------------~~l~~~navprl-l~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~-- 141 (479)
T KOG4676|consen 87 GDEVIPDRFAF----------------------VELADQNAVPRL-LPPDGVLPGDRPLTKINHSPNAILKTPELPPQ-- 141 (479)
T ss_pred CCCCCccHHHH----------------------HhcCcccccccc-cCCCCccCCCCccccccCCccceecCCCCChH--
Confidence 53322111000 000110110000 000000000 000011111111111000000
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc--CCCC
Q 037049 454 IALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP--STKT 531 (731)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~--~~kg 531 (731)
+... ....-.++++|.+|+..|...++-++|..+|.|...++. ....
T Consensus 142 ---------------~~A~----------------kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~ 190 (479)
T KOG4676|consen 142 ---------------AAAK----------------KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSS 190 (479)
T ss_pred ---------------hhhh----------------hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCc
Confidence 0000 011113689999999999999999999999999887775 3456
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccC
Q 037049 532 LALVVFLEPVEAAAAFKGLAYKRYK 556 (731)
Q Consensus 532 ~afV~F~~~e~A~~Ai~~lng~~~~ 556 (731)
+|.|.|....+...|+.. +|..|.
T Consensus 191 ~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 191 SCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred chhhhHhhhhhHHHHHHh-cchhhh
Confidence 888999988888888864 667666
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.14 E-value=5.7e-06 Score=88.24 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
.....+|||+|||++++..+|.++|..||. |....|....+.++ ..+||||+|.+..++..||.+ +-..|+||+
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~---Ik~~~I~vr~~~~~--~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~k 358 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGP---IKEGGIQVRSPGGK--NPCFGFVEFENAAAVQNAIEA-SPLEIGGRK 358 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhccc---ccccceEEeccCCC--cCceEEEEEeecchhhhhhhc-CccccCCee
Confidence 334455999999999999999999999999 99999998653333 339999999999999999996 588889999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.-.++.-.
T Consensus 359 l~Veek~~~~~ 369 (419)
T KOG0116|consen 359 LNVEEKRPGFR 369 (419)
T ss_pred EEEEecccccc
Confidence 99998877543
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.09 E-value=4.7e-06 Score=82.45 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
.....+.+||+|+.+.+|.+++..+|+.||. |..+.|+.++..+. ++|||||+|.+.+.+.+|+. |+|..|.|+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~---i~~~ti~~d~~~~~--~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGG---INRVTVPKDKFRGH--PKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCC---ccceeeeccccCCC--cceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 3446678999999999999999999999999 98899999875554 89999999999999999999 999999999
Q ss_pred EEEEEeccCCc
Q 037049 691 ALILQLCHAKK 701 (731)
Q Consensus 691 ~l~v~~ak~~~ 701 (731)
.+.|.+.+-..
T Consensus 171 ~i~vt~~r~~~ 181 (231)
T KOG4209|consen 171 AIEVTLKRTNV 181 (231)
T ss_pred cceeeeeeeec
Confidence 99999987653
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=3.4e-05 Score=61.48 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=49.4
Q ss_pred cEEEEeCCCCCCCHH----HHHHHhcccC-ceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCc
Q 037049 495 HVFLVKNLPYDSSEG----ELAKMFGKFG-SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 495 ~~l~V~NLp~~~te~----~L~~~F~~~G-~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 569 (731)
..|+|.|||.+.+.. .|++++..+| .|..| ..+.|+|.|.+++.|.+|.+.|+|....|+.|.|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 469999999988765 5667887887 45444 47899999999999999999999999999999999997643
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.91 E-value=1.3e-06 Score=89.20 Aligned_cols=74 Identities=19% Similarity=0.312 Sum_probs=60.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
.+-|+|+|+..-++-|..++..||.+..|..+.- ..-.-..-|+|...+.+..||..|+|..+.+..+.|.|.-
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 5779999999999999999999999988866321 1122234488999999999999999999999999998854
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.90 E-value=1.1e-05 Score=81.87 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=60.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD----GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
|.|.||.+.+|.+.+..+|+-.|.|..+.|+.+.. ......|||.|.+...+..|-. |.++.|-++.|.|..+
T Consensus 10 Iqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 10 IQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 78999999999999999999999999999987543 3446789999999999888865 6666666766666533
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.86 E-value=2e-06 Score=87.87 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=120.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCC-cccCCeEEEEEecCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN-SIFQGRLLHVMPARH 377 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~-~~~~g~~l~V~~a~~ 377 (731)
.+|++||.+.++..+|..+|...- ....-.++ -.||+||.+.+...|.+|++.++| ..+.|+++.|..+.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 699999999999999999998641 11111222 257999999999999999999998 577899999988765
Q ss_pred CCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhh
Q 037049 378 KKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALG 457 (731)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~ 457 (731)
++. +
T Consensus 76 kkq--------------------r-------------------------------------------------------- 79 (584)
T KOG2193|consen 76 KKQ--------------------R-------------------------------------------------------- 79 (584)
T ss_pred HHH--------------------H--------------------------------------------------------
Confidence 321 1
Q ss_pred hhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC---CCCEEE
Q 037049 458 ETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS---TKTLAL 534 (731)
Q Consensus 458 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~---~kg~af 534 (731)
.+.+-|+|+|.-.-++-|-.|...||.+..+.... ..-..-
T Consensus 80 ------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvn 123 (584)
T KOG2193|consen 80 ------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVN 123 (584)
T ss_pred ------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHH
Confidence 12367999999999999999999999998775432 222345
Q ss_pred EEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCcc
Q 037049 535 VVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVL 570 (731)
Q Consensus 535 V~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 570 (731)
|.|.+.+.+..||..|+|..+....+.+.|.+....
T Consensus 124 vty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 124 VTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 678999999999999999999999999999986543
No 155
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.62 E-value=4.1e-05 Score=73.93 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=62.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCC--------CCcee----EEEEEecCHHHHHHHHHHcCCcc
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDT--------KRSKG----IAYVLYAIPESASRAIEVLDNSI 364 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~--------g~~~g----~afV~F~~~e~A~~Al~~l~~~~ 364 (731)
..+.||+++||+.+...-|+++|+.||.|-.|.+-....+ |.+++ -|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5568999999999999999999999999999988766544 33333 37899999999999999999999
Q ss_pred cCCeE
Q 037049 365 FQGRL 369 (731)
Q Consensus 365 ~~g~~ 369 (731)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.55 E-value=0.00015 Score=62.58 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=49.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC-----CCccCC
Q 037049 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ-----GTILDG 689 (731)
Q Consensus 615 ~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln-----g~~i~G 689 (731)
++.|+|.+++..++.++|+++|..||. |..|.+.... -.|||.|.+.+.|.+|+..+. +..|.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~---V~yVD~~~G~--------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~ 69 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGE---VAYVDFSRGD--------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKG 69 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS-----EEEEE--TT---------SEEEEEESS---HHHHHHHHHHTTTS-B-TTS
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCC---cceEEecCCC--------CEEEEEECCcchHHHHHHHHHhccCCceEEcC
Confidence 467999999999999999999999998 9988777632 249999999999999998875 457888
Q ss_pred cEEEEEeccCCchh
Q 037049 690 HALILQLCHAKKDE 703 (731)
Q Consensus 690 r~l~v~~ak~~~~~ 703 (731)
..+.+.+-...++.
T Consensus 70 ~~~~~~vLeGeeE~ 83 (105)
T PF08777_consen 70 KEVTLEVLEGEEEE 83 (105)
T ss_dssp SSEEEE---HHHHH
T ss_pred ceEEEEECCCHHHH
Confidence 88888887666544
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.55 E-value=0.00021 Score=61.67 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=45.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCC-----ccCCceEEEEe
Q 037049 495 HVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYK-----RYKGVPLYLEW 564 (731)
Q Consensus 495 ~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~-----~~~gr~l~v~~ 564 (731)
+.|+|.+++..++.++|+++|+.||.|..|.+.+....|+|.|.+++.|..|+..+.-. .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999999887789999999999999999887543 45555554444
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.40 E-value=0.00034 Score=69.83 Aligned_cols=75 Identities=19% Similarity=0.389 Sum_probs=61.3
Q ss_pred EEEeCCCCCCCHHHH------HHHhhcCCCeEEEEEeecCC--CCcce-E-EEEEecCHHHHHHHHHHhCCCccCCceeE
Q 037049 3 ICVKNLPKYVTEDRL------RDFFSQKGEITDAKLMRTKD--GKSRQ-F-AFIGFRTEQEAEEAIKYFNKSYLDTCRIS 72 (731)
Q Consensus 3 l~V~nLp~~~te~~l------~~~F~~~G~i~~v~i~~~~~--g~~~g-~-afV~f~~~~~a~~ai~~~~g~~~~g~~i~ 72 (731)
+||-+||+.+-.++. .++|++||.|..|.|-+... ...-+ + -||+|.+.++|.+||...+|..++|+-|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 789999988777773 48999999999988866542 11122 2 39999999999999999999999999999
Q ss_pred EEeec
Q 037049 73 CEIAR 77 (731)
Q Consensus 73 v~~a~ 77 (731)
..+..
T Consensus 197 atYGT 201 (480)
T COG5175 197 ATYGT 201 (480)
T ss_pred eecCc
Confidence 98765
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.38 E-value=0.0002 Score=72.93 Aligned_cols=89 Identities=13% Similarity=0.224 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEE-----EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL-----SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~-----~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
.....+|||-+||..+|+..|.++|..+|.|+.-. .++|.+++.++. +||-|.|.|.+...|+.|+..+++..
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~--~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGA--PKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccC--cCCceeeeecChhhhhhhhhhhcccc
Confidence 33456799999999999999999999999722111 145556665554 89999999999999999999999999
Q ss_pred cCCcEEEEEeccCCch
Q 037049 687 LDGHALILQLCHAKKD 702 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~~ 702 (731)
+.|.+|+|.+|..+..
T Consensus 141 f~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTG 156 (351)
T ss_pred ccCCCchhhhhhhccC
Confidence 9999999999987763
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.25 E-value=0.00029 Score=71.80 Aligned_cols=85 Identities=28% Similarity=0.408 Sum_probs=77.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVS--------EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ 366 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~ 366 (731)
.....+|||-+||..+++.+|..+|.++|.|. .|.|.+|+.|+.++|-|.|.|.+...|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 56667999999999999999999999999774 5788899999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 037049 367 GRLLHVMPARHKK 379 (731)
Q Consensus 367 g~~l~V~~a~~~~ 379 (731)
|..|.|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887543
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0006 Score=72.84 Aligned_cols=76 Identities=20% Similarity=0.365 Sum_probs=63.2
Q ss_pred eEEEeCCCCCCC--HH----HHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceeEEE
Q 037049 2 RICVKNLPKYVT--ED----RLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLD-TCRISCE 74 (731)
Q Consensus 2 ~l~V~nLp~~~t--e~----~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~-g~~i~v~ 74 (731)
-|+|-|+|--=. -+ -|..+|+++|+|+.+.++.+..|.++||.|++|.++.+|+.|++.|||+.++ ++++.|.
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 477778775322 12 2358899999999999999888889999999999999999999999999887 8888887
Q ss_pred eec
Q 037049 75 IAR 77 (731)
Q Consensus 75 ~a~ 77 (731)
.-+
T Consensus 140 ~f~ 142 (698)
T KOG2314|consen 140 LFK 142 (698)
T ss_pred hhh
Confidence 654
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.15 E-value=0.00088 Score=66.99 Aligned_cols=84 Identities=24% Similarity=0.506 Sum_probs=64.9
Q ss_pred cCCCCeEEEeCCCCCCCHHH----H--HHHHhcCCCeeEEEEeeeCCCCC-ceeE--EEEEecCHHHHHHHHHHcCCccc
Q 037049 295 VLESGRLFVRNLPYTATEDE----L--REHFSKFGNVSEVHIVVDKDTKR-SKGI--AYVLYAIPESASRAIEVLDNSIF 365 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~----l--~~~F~~~G~i~~i~i~~d~~~g~-~~g~--afV~F~~~e~A~~Al~~l~~~~~ 365 (731)
+....-+||-+||+.+..++ | .++|.+||.|..|.|-+...+.. ..+. .||.|.+.++|.+||...+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 44556789999999987666 2 47999999999887754321111 1222 39999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 037049 366 QGRLLHVMPARHK 378 (731)
Q Consensus 366 ~g~~l~V~~a~~~ 378 (731)
.||.|+..|...+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999987643
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.08 E-value=0.002 Score=54.72 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=54.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEE-------------ccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCce
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVI-------------LPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVP 559 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~-------------l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~ 559 (731)
..+.|.|.++|.. ....|.+.|++||.|.+.. .+...++.-|+|.++.+|.+|+.. ||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3567999999987 6778999999999998774 445677999999999999999976 999999876
Q ss_pred EE-EEeC
Q 037049 560 LY-LEWA 565 (731)
Q Consensus 560 l~-v~~a 565 (731)
|- |.|.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 54 6665
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.05 E-value=0.00044 Score=69.39 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=65.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKG--EITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCE 74 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~ 74 (731)
.+|||||-|++|++||.+.....| .+.++++..++. |.++|||+|...+....++.++.|....++|..-.|-
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 379999999999999998888877 477888888887 9999999999999999999999999999998766664
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.00 E-value=0.002 Score=48.00 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=45.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHH
Q 037049 495 HVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAF 547 (731)
Q Consensus 495 ~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai 547 (731)
+.|-|.+.+... .+.+...|..||.|..+.+.....+.+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~-~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDL-AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchH-HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 468899988654 4667789999999999999888999999999999999985
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0034 Score=67.33 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=62.9
Q ss_pred eEEEeCCCCCCC--H----HHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC-CeEEEE
Q 037049 300 RLFVRNLPYTAT--E----DELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ-GRLLHV 372 (731)
Q Consensus 300 ~l~v~nLp~~~t--~----~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~-g~~l~V 372 (731)
.|+|-|+|.--. . .-|..+|+++|+|..+.++.+..+| .+||.|++|.+..+|..|++.|||+.|. +++..|
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 788999997422 2 2356899999999999999898555 9999999999999999999999998886 677887
Q ss_pred EecC
Q 037049 373 MPAR 376 (731)
Q Consensus 373 ~~a~ 376 (731)
..-+
T Consensus 139 ~~f~ 142 (698)
T KOG2314|consen 139 RLFK 142 (698)
T ss_pred ehhh
Confidence 7543
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.67 E-value=0.0039 Score=46.41 Aligned_cols=51 Identities=25% Similarity=0.554 Sum_probs=41.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHH
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAI 58 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai 58 (731)
-|-|.+.|.+..+.-| .+|.+||.|.++.+... .-+.||.|.+..+|++||
T Consensus 3 wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVL-EHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 4678888887775544 58899999999888732 458999999999999985
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.66 E-value=0.0018 Score=67.26 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=61.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeee---cCCCCcccc--------cEEEEEeCCHHHHHHHH
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKH---LKNGKNVSM--------GFGFIEFDSVETATNVC 679 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~---~~~~~~~~k--------G~afV~F~s~e~A~~Ai 679 (731)
...++++|.+-|||.+-.-+.|.++|..||. |.+|+|+.. ..++++.++ -.|||+|...+.|.+|.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~---IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGS---IKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccc---eeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 4468899999999999888999999999999 999999987 444444443 36899999999999999
Q ss_pred HHhCCCcc
Q 037049 680 RDLQGTIL 687 (731)
Q Consensus 680 ~~lng~~i 687 (731)
..||...-
T Consensus 304 e~~~~e~~ 311 (484)
T KOG1855|consen 304 ELLNPEQN 311 (484)
T ss_pred Hhhchhhh
Confidence 98874433
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=0.0046 Score=60.16 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEE
Q 037049 541 VEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFV 620 (731)
Q Consensus 541 e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V 620 (731)
.-|..|-..|+++...|+.|.|.||... .|||
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------------~l~V 36 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------------ELYV 36 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------------eEEE
Confidence 3456667788999999999999999652 4999
Q ss_pred eCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC----CCccCCcEEEEEe
Q 037049 621 KNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ----GTILDGHALILQL 696 (731)
Q Consensus 621 ~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln----g~~i~Gr~l~v~~ 696 (731)
.||+..+.-+.|..-|+.||+ |...-++.+. .+.+.|-++|.|...-.|.+|+..++ +....|++..|..
T Consensus 37 ~nl~~~~sndll~~~f~~fg~---~e~av~~vD~---r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 37 VNLMQGASNDLLEQAFRRFGP---IERAVAKVDD---RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred EecchhhhhHHHHHhhhhcCc---cchheeeecc---cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 999999999999999999999 9888777764 33377789999999999999999885 4455778877776
Q ss_pred ccCCc
Q 037049 697 CHAKK 701 (731)
Q Consensus 697 ak~~~ 701 (731)
..+-.
T Consensus 111 ~eq~~ 115 (275)
T KOG0115|consen 111 MEQPD 115 (275)
T ss_pred hhccC
Confidence 65444
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.36 E-value=0.0062 Score=60.08 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=58.5
Q ss_pred CcEEEEeCCC--CCCC---HHHHHHHhcccCceeEEEccCC-------CCEEEEEeCCHHHHHHHHHhcCCCccCCceEE
Q 037049 494 NHVFLVKNLP--YDSS---EGELAKMFGKFGSLDKVILPST-------KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561 (731)
Q Consensus 494 ~~~l~V~NLp--~~~t---e~~L~~~F~~~G~i~~v~l~~~-------kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~ 561 (731)
.++|.++|+- ..++ ++++++.+.+||.|.+|.|... ---.||+|...++|.+|+--|||+.|+||.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 3456666663 2233 4688999999999999987631 22689999999999999999999999999999
Q ss_pred EEeCCC
Q 037049 562 LEWAPS 567 (731)
Q Consensus 562 v~~a~~ 567 (731)
..|...
T Consensus 361 A~Fyn~ 366 (378)
T KOG1996|consen 361 ACFYNL 366 (378)
T ss_pred heeccH
Confidence 887753
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.28 E-value=0.015 Score=49.41 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=49.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEE-Eeec-------CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeE-
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAK-LMRT-------KDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRIS- 72 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-i~~~-------~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~- 72 (731)
-|.|=+.|.. ....|.++|++||.|++.. +.++ +......+-.|+|.++.+|.+||. .||..+.|..|-
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvG 85 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVG 85 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEE
T ss_pred EEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEE
Confidence 3667788888 5567779999999998764 1111 111224689999999999999998 899999886554
Q ss_pred EEeec
Q 037049 73 CEIAR 77 (731)
Q Consensus 73 v~~a~ 77 (731)
|.+.+
T Consensus 86 V~~~~ 90 (100)
T PF05172_consen 86 VKPCD 90 (100)
T ss_dssp EEE-H
T ss_pred EEEcH
Confidence 55554
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.27 E-value=0.0047 Score=66.72 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=68.1
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhc-ccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccC---CceEEEEeC
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFG-KFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYK---GVPLYLEWA 565 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~-~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~---gr~l~v~~a 565 (731)
.....++|+|.||---+|..+|+.++. ..|.|...+|.+-|..|||.|.+.++|.+.+.+|||..+- ++.|.+.|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 455678999999988889999999999 5556777788889999999999999999999999998864 788999998
Q ss_pred CC
Q 037049 566 PS 567 (731)
Q Consensus 566 ~~ 567 (731)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 64
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.24 E-value=0.0027 Score=61.67 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=60.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCC------CCccccc----EEEEEeCCHHHHHHHHHHhC
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKN------GKNVSMG----FGFIEFDSVETATNVCRDLQ 683 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~------~~~~~kG----~afV~F~s~e~A~~Ai~~ln 683 (731)
..-.||+.|||.......|+++|..||. |-.|.+...... +.+.+++ -|+|+|.+...|.++...||
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGe---VGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGE---VGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccc---cceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3346999999999999999999999999 888887765422 0011122 37899999999999999999
Q ss_pred CCccCCcE
Q 037049 684 GTILDGHA 691 (731)
Q Consensus 684 g~~i~Gr~ 691 (731)
|..|+|++
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99999985
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.17 E-value=0.0024 Score=62.31 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=52.9
Q ss_pred HHHHHHhc-cccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCC
Q 037049 630 ENLRKHFG-EHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700 (731)
Q Consensus 630 e~L~~~F~-~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~ 700 (731)
++|...|. +||+ |..++|..+.. -..+|=+||.|...++|.+|+..|||..+.|++|.+.|..=.
T Consensus 83 Ed~f~E~~~kygE---iee~~Vc~Nl~---~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGE---IEELNVCDNLG---DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhh---hhhhhhhcccc---hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44444444 7888 99998888651 125777999999999999999999999999999999998543
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.16 E-value=0.016 Score=56.47 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=63.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCC----cccCCeEEEEEec
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN----SIFQGRLLHVMPA 375 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~----~~~~g~~l~V~~a 375 (731)
.|||.||+..+..+.+...|+.||+|....++.|. .+++.+-++|.|...-.|.+|+..++- ....++..-|...
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 59999999999999999999999999998888887 688999999999999999999988843 3334566655544
Q ss_pred C
Q 037049 376 R 376 (731)
Q Consensus 376 ~ 376 (731)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.02 E-value=0.013 Score=59.05 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFG--NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...+||+||-|-+|++||.+.+...| .+.+++++.++.+|.++|||+|...+.....+.++.|-...|.|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34789999999999999999888877 5788899999999999999999999999999999999999999987666654
Q ss_pred C
Q 037049 376 R 376 (731)
Q Consensus 376 ~ 376 (731)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.00 E-value=0.0059 Score=63.56 Aligned_cols=63 Identities=30% Similarity=0.386 Sum_probs=55.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCC-------------------CCEEEEEeCCHHHHHHHHHhcC
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPST-------------------KTLALVVFLEPVEAAAAFKGLA 551 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~-------------------kg~afV~F~~~e~A~~Ai~~ln 551 (731)
.-+.++|.+.|||.+-..+.|.++|..+|.|..|.|++. +-+|+|+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346789999999999888999999999999999998742 3489999999999999999886
Q ss_pred CC
Q 037049 552 YK 553 (731)
Q Consensus 552 g~ 553 (731)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.71 E-value=0.042 Score=49.65 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCCCCCeEEEeCCC-----CCCCH----HHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHH
Q 037049 611 DRVESRSLFVKNLN-----FKTCD----ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681 (731)
Q Consensus 611 ~~~~~~~L~V~NLp-----~~~te----e~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ 681 (731)
.+++-.||.|.=+. ..... .+|.+.|..||+ ++-+|+.-.. -+|.|.+-++|.+|+.
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~Ge---vvLvRfv~~~----------mwVTF~dg~sALaals- 88 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGE---VVLVRFVGDT----------MWVTFRDGQSALAALS- 88 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS----ECEEEEETTC----------EEEEESSCHHHHHHHH-
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCc---eEEEEEeCCe----------EEEEECccHHHHHHHc-
Confidence 34455666665444 12223 367777888888 8888777542 8999999999999999
Q ss_pred hCCCccCCcEEEEEeccCCch
Q 037049 682 LQGTILDGHALILQLCHAKKD 702 (731)
Q Consensus 682 lng~~i~Gr~l~v~~ak~~~~ 702 (731)
|+|..++|+.|.|.+..+.--
T Consensus 89 ~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 89 LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp GCCSEETTEEEEEEE------
T ss_pred cCCcEECCEEEEEEeCCccHH
Confidence 899999999999999876654
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.60 E-value=0.033 Score=50.28 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=46.1
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 16 RLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 16 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
+|.+.|..||.+.=|++..+ .-+|+|.+-+.|.+|+. ++|..+.|+.|+|.+..|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 56788999999888887764 68999999999999998 9999999999999988763
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.39 E-value=0.039 Score=54.64 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCCeEEEEEeecCC-CCc-ceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 14 EDRLRDFFSQKGEITDAKLMRTKD-GKS-RQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 14 e~~l~~~F~~~G~i~~v~i~~~~~-g~~-~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
+++++.-+.+||.|..|.|..++. -.. ----||+|...++|-+|+-.|||.+|+|+.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 456778899999999999888765 222 2347999999999999999999999999999888765
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.32 E-value=0.0091 Score=58.35 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=52.8
Q ss_pred HHHHHHhh-cCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 15 DRLRDFFS-QKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 15 ~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|...|. +||.|..+.|..+..-..+|-+||.|...++|++|++.||+.++.|++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444455 8899999988776555667899999999999999999999999999999998764
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.85 E-value=0.057 Score=58.68 Aligned_cols=78 Identities=31% Similarity=0.309 Sum_probs=64.8
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC---CeE
Q 037049 294 EVLESGRLFVRNLPYTATEDELREHFSK-FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ---GRL 369 (731)
Q Consensus 294 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~---g~~ 369 (731)
....+..|+|.||-..+|.-.|+.++.+ .|.|.+.+| |+ -+..|||.|.+.++|......|||..|- ++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4566789999999999999999999996 566777643 22 3557999999999999999999998874 688
Q ss_pred EEEEecCC
Q 037049 370 LHVMPARH 377 (731)
Q Consensus 370 l~V~~a~~ 377 (731)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99998874
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.63 E-value=0.15 Score=41.14 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=40.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcC
Q 037049 495 HVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLA 551 (731)
Q Consensus 495 ~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~ln 551 (731)
.+++|. +|..|-..||.++|++||.|. |... +-.-|||...+.++|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi-~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWI-NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEE-CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEE-cCCcEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999994 4333 45669999999999999998875
No 184
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.24 Score=53.95 Aligned_cols=80 Identities=24% Similarity=0.212 Sum_probs=63.0
Q ss_pred cCCCCeEEEeCCCCC-CCHHHHHHHHhcC----CCeeEEEEeeeCCCCC-------------------------------
Q 037049 295 VLESGRLFVRNLPYT-ATEDELREHFSKF----GNVSEVHIVVDKDTKR------------------------------- 338 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~i~~i~i~~d~~~g~------------------------------- 338 (731)
...+++|-|.|+.|. +...+|.-+|+.| |.|.+|.|+... -|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 445679999999997 7889999988876 589999887543 221
Q ss_pred -----------------ceeEEEEEecCHHHHHHHHHHcCCcccC--CeEEEEEec
Q 037049 339 -----------------SKGIAYVLYAIPESASRAIEVLDNSIFQ--GRLLHVMPA 375 (731)
Q Consensus 339 -----------------~~g~afV~F~~~e~A~~Al~~l~~~~~~--g~~l~V~~a 375 (731)
..-||.|.|.+.+.|......++|..|. |..|-++|.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1247999999999999999999999987 455665654
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.32 E-value=0.2 Score=44.56 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=59.4
Q ss_pred CcCCCcEEEEeCCCCCC----CHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 490 LKRSNHVFLVKNLPYDS----SEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~----te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
..++-.+|.|+=|..++ +...+....+.||+|.+|.+. .+..|+|.|.+..+|..|+.++.. ...|..+++.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 35566788887555443 445566677899999998876 466799999999999999998765 777899999997
Q ss_pred CC
Q 037049 566 PS 567 (731)
Q Consensus 566 ~~ 567 (731)
..
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.27 E-value=0.16 Score=40.99 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=40.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~ 361 (731)
..+| .+|..+...||.++|+.||.| .|..+.|. -|||.....+.|..|+..+.
T Consensus 11 VFhl-tFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHL-TFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEE-E--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEE-eCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 4556 599999999999999999987 55555553 59999999999999997774
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.10 E-value=0.25 Score=44.03 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=58.0
Q ss_pred CCCCCCeEEEeCCCCCCC-HHHHH---HHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 611 DRVESRSLFVKNLNFKTC-DENLR---KHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~t-ee~L~---~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
...+-.||.|+=|..++. .+||+ ..++.||+ |.+|.++-.. .|.|.|.+..+|-+|+.+++. .
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGp---I~SVT~cGrq---------savVvF~d~~SAC~Av~Af~s-~ 148 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGP---IQSVTLCGRQ---------SAVVVFKDITSACKAVSAFQS-R 148 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCC---cceeeecCCc---------eEEEEehhhHHHHHHHHhhcC-C
Confidence 455677899987666552 34444 45577888 9999887532 399999999999999999977 6
Q ss_pred cCCcEEEEEeccC
Q 037049 687 LDGHALILQLCHA 699 (731)
Q Consensus 687 i~Gr~l~v~~ak~ 699 (731)
.-|..+.|+|-.+
T Consensus 149 ~pgtm~qCsWqqr 161 (166)
T PF15023_consen 149 APGTMFQCSWQQR 161 (166)
T ss_pred CCCceEEeecccc
Confidence 7888999988654
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.96 E-value=0.024 Score=57.80 Aligned_cols=75 Identities=17% Similarity=0.343 Sum_probs=60.7
Q ss_pred EEEeCCCCCCCHHHH---HHHhhcCCCeEEEEEeecCC-----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 037049 3 ICVKNLPKYVTEDRL---RDFFSQKGEITDAKLMRTKD-----GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCE 74 (731)
Q Consensus 3 l~V~nLp~~~te~~l---~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~ 74 (731)
+||-+||..+-.+++ .+.|++||.|.+|.+.++.. +.+ .-+||+|...++|..||...+|..++|+.++..
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 577788877655554 37899999999999988772 222 238999999999999999999999999998887
Q ss_pred eecc
Q 037049 75 IARK 78 (731)
Q Consensus 75 ~a~~ 78 (731)
+..+
T Consensus 159 ~gtt 162 (327)
T KOG2068|consen 159 LGTT 162 (327)
T ss_pred hCCC
Confidence 7664
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.95 E-value=0.29 Score=37.43 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=44.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcC----CCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc
Q 037049 299 GRLFVRNLPYTATEDELREHFSKF----GNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l 360 (731)
..|+|+|+.. ++.++|+.+|..| + ...|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3799999965 8889999999998 4 5578888776 4889999999999999654
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.60 E-value=0.3 Score=48.96 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceE-EEEeC
Q 037049 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPL-YLEWA 565 (731)
Q Consensus 494 ~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l-~v~~a 565 (731)
...|-|.++|.. .-.-|.++|++||.|++........+-.|.|.+..+|.+|+.+ ||+.|+|..+ -|...
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 567889999875 4566889999999999987776667999999999999999976 9999998664 45553
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.46 E-value=0.36 Score=36.95 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=44.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcC---CCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHh
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQK---GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF 61 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~ 61 (731)
.|+|+++. +++.+||+.+|..| .....|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 58999985 69999999999999 134578888883 4889999999999999754
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.43 E-value=0.17 Score=48.32 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhcc-ccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc---CC
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGE-HIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL---DG 689 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~-~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i---~G 689 (731)
....|.||+||...|++++.+.+.. ++..-...++.-...........-.-|||.|.+.+++..-...++|..+ .|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4457999999999999999998877 6550001333322222111111345699999999999999999999777 22
Q ss_pred --cEEEEEeccCCc
Q 037049 690 --HALILQLCHAKK 701 (731)
Q Consensus 690 --r~l~v~~ak~~~ 701 (731)
-+..|.+|.-+.
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 356777775543
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.20 E-value=0.2 Score=48.00 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=49.5
Q ss_pred CHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcC--CCccCCceEEEEeCC
Q 037049 507 SEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLA--YKRYKGVPLYLEWAP 566 (731)
Q Consensus 507 te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~ln--g~~~~gr~l~v~~a~ 566 (731)
....|+.+|..|+.+..+...++-+-..|.|.+.+.|.+|...|+ +..|.|..+.|.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 458899999999999999999999999999999999999999999 999999999999994
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.20 E-value=0.18 Score=48.08 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=51.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhc-CCCe---eEEEEeeeCC-CC-CceeEEEEEecCHHHHHHHHHHcCCcccC---C
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSK-FGNV---SEVHIVVDKD-TK-RSKGIAYVLYAIPESASRAIEVLDNSIFQ---G 367 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i---~~i~i~~d~~-~g-~~~g~afV~F~~~e~A~~Al~~l~~~~~~---g 367 (731)
...+|.|++||+++|++++...++. ++.- ..+.-..... .+ ....-|||.|.+.+++....+.++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999887776 5544 3333112111 11 12446999999999999999999997774 2
Q ss_pred --eEEEEEecCCC
Q 037049 368 --RLLHVMPARHK 378 (731)
Q Consensus 368 --~~l~V~~a~~~ 378 (731)
....|++|--.
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 35666776543
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.84 E-value=1.6 Score=38.02 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=47.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ 366 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~ 366 (731)
.+.+...|+.++.++|..+.+.+- .|..++|++|. + .++--+.+.|.+.++|......+||+.|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-T-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-C-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444455555566766665553 58889999875 2 25667899999999999999999998886
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.20 E-value=0.4 Score=45.90 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=46.7
Q ss_pred CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC--CCccCCcEEEEEeccCCch
Q 037049 628 CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ--GTILDGHALILQLCHAKKD 702 (731)
Q Consensus 628 tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln--g~~i~Gr~l~v~~ak~~~~ 702 (731)
....|+++|..|+. +.....++.+ +-..|.|.+.+.|.+|...|+ +..+.|..++|-|+.....
T Consensus 8 ~~~~l~~l~~~~~~---~~~~~~L~sF--------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDP---PVQFSPLKSF--------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-S---S-EEEEETTT--------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCC---ceEEEEcCCC--------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 45889999999998 7777666643 348999999999999999999 9999999999999966544
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.83 E-value=0.12 Score=52.86 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=63.4
Q ss_pred EEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeec--CCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 037049 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHL--KNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695 (731)
Q Consensus 618 L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~--~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~ 695 (731)
+||-.|+...-.+.+.+--+.||.||.|.+|.+-.+. ..+.+ .-.-++|.|...++|..||...+|+.+.|+.|+..
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~-~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSG-GTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCC-CCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 7788888888777666554555544559998888765 11111 22348999999999999999999999999999999
Q ss_pred eccCCc
Q 037049 696 LCHAKK 701 (731)
Q Consensus 696 ~ak~~~ 701 (731)
++-.+.
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 987776
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.77 E-value=0.42 Score=51.81 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=58.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhc--CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCC--cccCCeEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSK--FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDN--SIFQGRLL 370 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~--~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~~~g~~l 370 (731)
...-|.|.|+-||..+-.++++.+|+. +-++.+|.+-.+. -.||+|.+..||+.|...|.- +.|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 556678899999999999999999986 5577888776543 269999999999999988854 67778776
Q ss_pred EEEe
Q 037049 371 HVMP 374 (731)
Q Consensus 371 ~V~~ 374 (731)
..++
T Consensus 245 mARI 248 (684)
T KOG2591|consen 245 MARI 248 (684)
T ss_pred hhhh
Confidence 5543
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.03 E-value=2.6 Score=36.70 Aligned_cols=65 Identities=25% Similarity=0.441 Sum_probs=46.7
Q ss_pred EEEeCCCCC-CCHHHHHHHhhcC-CCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 037049 3 ICVKNLPKY-VTEDRLRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDT 68 (731)
Q Consensus 3 l~V~nLp~~-~te~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g 68 (731)
|.|=-.|.. ++-++|..+.+.+ ..|..++|++|.. .++=.+.+.|.+...|......+||+.+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 333334444 5555565555555 4588999999754 245679999999999999999999998773
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.02 E-value=0.22 Score=52.94 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=61.0
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCC
Q 037049 493 SNHVFLVKNLPYDS-SEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 493 ~~~~l~V~NLp~~~-te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~ 567 (731)
..+.|-+.-.|... +-.+|...|.+||.|..|.+.-+--.|.|.|.+..+|-.|.. ..+..|++|.|+|.|-..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 44556565556554 678999999999999999887666779999999999988774 589999999999999854
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.01 E-value=0.28 Score=52.16 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=64.3
Q ss_pred cCCCCeEEEeCCCCCC-CHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 295 VLESGRLFVRNLPYTA-TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~-t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
..+.+.|-+.-.|+.. +-.+|..+|..||.|..|.|-.. .-.|.|+|.+..+|-.|. ..++..|.||.|+|.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEE
Confidence 4566677777777775 56789999999999999988543 236899999999998888 789999999999999
Q ss_pred ecCCC
Q 037049 374 PARHK 378 (731)
Q Consensus 374 ~a~~~ 378 (731)
|.++.
T Consensus 442 whnps 446 (526)
T KOG2135|consen 442 WHNPS 446 (526)
T ss_pred EecCC
Confidence 99874
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.21 E-value=0.75 Score=46.21 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=45.4
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 037049 5 VKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71 (731)
Q Consensus 5 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i 71 (731)
|=++|+.-. .-|..+|.+||.|++..... + -.+-+|.|.+.-+|++||. .||..|+|..|
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~~--n---gNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTPS--N---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecCC--C---CceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 445555433 45678999999998765442 2 3489999999999999998 89999987643
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.16 E-value=1.8 Score=33.77 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 037049 626 KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694 (731)
Q Consensus 626 ~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v 694 (731)
.++-++|+..+..|+ ...| ..++ +| =||.|.+.++|.+|....+|+.+.+-+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~----~~~I--~~d~-tG-------fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR----WDRI--RDDR-TG-------FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC----cceE--EecC-CE-------EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999997 3443 3443 32 589999999999999999999998877664
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.02 E-value=0.31 Score=55.40 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=66.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc--CCcEEE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL--DGHALI 693 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i--~Gr~l~ 693 (731)
...++-|.+-..|-.-|..+|..||. |.+++..++.. .|.|+|.+.+.|..|+.+++|+.+ -|-+.+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~---v~s~wtlr~~N--------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~ 367 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGS---VASAWTLRDLN--------MALVSFSSVESAILALDALQGKEVSVTGAPSR 367 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcc---hhhheeccccc--------chhhhhHHHHHHHHhhhhhcCCcccccCCcee
Confidence 34667788888899999999999999 99999988652 399999999999999999999887 789999
Q ss_pred EEeccCCc
Q 037049 694 LQLCHAKK 701 (731)
Q Consensus 694 v~~ak~~~ 701 (731)
|+||+.-+
T Consensus 368 V~~ak~~~ 375 (1007)
T KOG4574|consen 368 VSFAKTLP 375 (1007)
T ss_pred EEeccccc
Confidence 99998765
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.88 E-value=2 Score=34.39 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=40.2
Q ss_pred CeEEEeCC--CCCCCHHHHHHHhhcCCC-----eEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 037049 1 SRICVKNL--PKYVTEDRLRDFFSQKGE-----ITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISC 73 (731)
Q Consensus 1 s~l~V~nL--p~~~te~~l~~~F~~~G~-----i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v 73 (731)
+|+||. + -..++..+|..++...+. |-.|.|..+ |+||+-.. +.|..++..|++..+.|++++|
T Consensus 1 vrl~in-~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 1 VRLFIN-VGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp -EEEES--SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----E
T ss_pred CEEEEE-cccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEE
Confidence 355552 3 335888999888887643 567887765 99999854 5889999999999999999999
Q ss_pred Eee
Q 037049 74 EIA 76 (731)
Q Consensus 74 ~~a 76 (731)
+.|
T Consensus 72 e~A 74 (74)
T PF03880_consen 72 ERA 74 (74)
T ss_dssp EE-
T ss_pred EEC
Confidence 865
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.82 E-value=0.33 Score=55.21 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CceeEEEeeccC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLD--TCRISCEIARKV 79 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~--g~~i~v~~a~~~ 79 (731)
.++.|.+-..+..-|..+|++||.|.+.+.+++ -..|.|+|.+.+.|-.|+..|.|..+- |.+.+|.+|++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 356778888999999999999999999999998 458999999999999999999998754 899999999864
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.60 E-value=1.9 Score=34.56 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHhccccCc--ccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Q 037049 625 FKTCDENLRKHFGEHIKE--GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLC 697 (731)
Q Consensus 625 ~~~tee~L~~~F~~~G~~--~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~a 697 (731)
..++..+|..++...+.+ ..|-.+.|..+ |+||+-. .+.|..++..|++..+.|++|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----------~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----------FSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----------EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----------EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457788889988776542 23556777665 4899987 55899999999999999999999876
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.56 E-value=1.9 Score=45.90 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=58.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG 367 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g 367 (731)
+..|+|-.+|..++-.||..|...+- .|.+|+|++|. .+ ++-..+|.|.+..+|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-MP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-CC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999988754 68999999965 22 35568899999999999999999988863
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.07 E-value=2.7 Score=32.79 Aligned_cols=55 Identities=20% Similarity=0.436 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 309 TATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 309 ~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
.++-++++..+..|+ ... |..|+ + || ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 367899999999997 334 44454 4 44 89999999999999999999998887764
No 210
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.61 E-value=33 Score=34.89 Aligned_cols=190 Identities=15% Similarity=0.191 Sum_probs=109.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCC-------------CEEEEEeCCHHHHHHH----HHhcCC--C
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK-------------TLALVVFLEPVEAAAA----FKGLAY--K 553 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~k-------------g~afV~F~~~e~A~~A----i~~lng--~ 553 (731)
..+.|...|+..+++-..+...|.+||+|++|.+.... ....+.|-+.+.|..- +++|+- +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998654 5789999999888643 333332 3
Q ss_pred ccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCC-CHHHH
Q 037049 554 RYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKT-CDENL 632 (731)
Q Consensus 554 ~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~-tee~L 632 (731)
.+....|.|.|..-+....... +...... ..........++. ...-++.|.|--- ..+ +++-|
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~----~~~~~~~-~~~~~~~L~~~i~----------~~gATRSl~IeF~-~~~~~~dl~ 157 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDP----NDEEADF-SDYLVASLQYNII----------NRGATRSLAIEFK-DPVDKDDLI 157 (309)
T ss_pred hcCCcceeEEEEEEeccccccc----cccccch-hhHHhhhhhheee----------cCCcceEEEEEec-CccchhHHH
Confidence 4667778888875432211110 0000000 0000111111111 1223445666532 333 33333
Q ss_pred HHHh---ccccC-cccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC--CCcc-CCcEEEEEecc
Q 037049 633 RKHF---GEHIK-EGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ--GTIL-DGHALILQLCH 698 (731)
Q Consensus 633 ~~~F---~~~G~-~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln--g~~i-~Gr~l~v~~ak 698 (731)
.+.+ ..-+. -=-++++.|.......+..++.||.+.|-+..-|...+..+. +..+ -.+-..|.++.
T Consensus 158 ~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 158 EKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred HHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 3322 11111 000556777765444455578899999999999999988875 2222 34445555554
No 211
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=81.40 E-value=2.8 Score=45.80 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhcc--ccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC--CCccCC
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGE--HIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ--GTILDG 689 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~--~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln--g~~i~G 689 (731)
..|.+.|+-||..+-.++++-+|.. |-+ +++|..-.+. + =||.|.+..+|..|.+.|. -..|.|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk---~iscefa~N~--n-------WyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPK---VISCEFAHND--N-------WYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCC---ceeeeeeecC--c-------eEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 3466999999999999999999954 666 8998887753 1 6899999999999998875 345566
Q ss_pred cEEEEE
Q 037049 690 HALILQ 695 (731)
Q Consensus 690 r~l~v~ 695 (731)
++|-..
T Consensus 242 KpImAR 247 (684)
T KOG2591|consen 242 KPIMAR 247 (684)
T ss_pred cchhhh
Confidence 666443
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.51 E-value=5.7 Score=42.49 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=58.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~ 688 (731)
+++.|+|--+|..+|--||..|...|-. .|..++|+++... ++-.++|.|.+.++|..-...+||+.+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~--~I~~irivRd~~p----nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIK--QISDIRIVRDGMP----NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhh--hhheeEEeecCCC----ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3677999999999999999999987754 4778999996422 5678999999999999999999999884
No 213
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.17 E-value=3 Score=43.58 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=44.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHH
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGN-VSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIE 358 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~ 358 (731)
..|=|.++|.....+||...|..|+. --.|.++-|. .||-.|.+...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 47889999999999999999999973 3456666554 69999999999999993
No 214
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=77.60 E-value=14 Score=38.86 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=57.7
Q ss_pred cCCCCeEEEeCCCCC-CCHHHHHHHHhcC----CCeeEEEEeeeCCCCC-------------------------------
Q 037049 295 VLESGRLFVRNLPYT-ATEDELREHFSKF----GNVSEVHIVVDKDTKR------------------------------- 338 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~i~~i~i~~d~~~g~------------------------------- 338 (731)
...+.+|-|-|+.|. +...+|...|+.| |.+..|.|+... -|+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse-fGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE-FGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh-hhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 344567888899987 7888998888865 567777776432 111
Q ss_pred -----------------------------------ceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEec
Q 037049 339 -----------------------------------SKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPA 375 (731)
Q Consensus 339 -----------------------------------~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a 375 (731)
..-||.|.+.+.+.+......++|..+.. ..+-++|.
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 12378999999999999999999988874 44555553
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.85 E-value=2.1 Score=47.81 Aligned_cols=73 Identities=23% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+..++||+|+...+..+.++.+...||- |.+++... |||..|....-+.+|+..++-..++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~---v~s~kr~~-----------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGF---VPSWKRDK-----------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCc---chhhhhhh-----------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 4556678999999999999999999999987 87765554 699999999999999999999999999
Q ss_pred EEEEEec
Q 037049 691 ALILQLC 697 (731)
Q Consensus 691 ~l~v~~a 697 (731)
.+.+-.-
T Consensus 102 kl~~~~d 108 (668)
T KOG2253|consen 102 KLIENVD 108 (668)
T ss_pred hhhccch
Confidence 8877654
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=74.23 E-value=2.3 Score=47.63 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=61.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
.+...++||+|+...+..+-++..+..+|.|.++.... |||..|..+.-...|+..++...+.|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45566999999999999999999999999887664432 999999999999999999998999998887766
No 217
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.36 E-value=3.5 Score=38.58 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=58.1
Q ss_pred cEEEEeCCCCCC-----CHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCc-eEEEEeCCC
Q 037049 495 HVFLVKNLPYDS-----SEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGV-PLYLEWAPS 567 (731)
Q Consensus 495 ~~l~V~NLp~~~-----te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr-~l~v~~a~~ 567 (731)
+.+++.+++..+ ......++|.+|....-..+.++.+..-|.|.+++.|..|...++++.|.|. .+++-++..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 457777777654 2234557788877776667778899999999999999999999999999998 788888754
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.67 E-value=3.3 Score=38.73 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=56.0
Q ss_pred eEEEeCCCCCC-----CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc-
Q 037049 617 SLFVKNLNFKT-----CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH- 690 (731)
Q Consensus 617 ~L~V~NLp~~~-----tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr- 690 (731)
++.+-+++..+ .......+|..|.+ ....++.+ +.++..|.|.+++.|..|...++++.|.|+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~---~~~fq~lr--------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINE---DATFQLLR--------SFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCc---chHHHHHH--------hhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 46666666544 23455666776665 44333333 455677889999999999999999999999
Q ss_pred EEEEEeccCCchhh
Q 037049 691 ALILQLCHAKKDEQ 704 (731)
Q Consensus 691 ~l~v~~ak~~~~~~ 704 (731)
.+++-||.+.-...
T Consensus 81 ~~k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 81 ELKLYFAQPGHPES 94 (193)
T ss_pred eEEEEEccCCCccc
Confidence 99999998776544
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.65 E-value=15 Score=40.72 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=60.5
Q ss_pred eEEEeCCCCC-CCHHHHHHHhhcC----CCeEEEEEeecCCCCc------------------------------------
Q 037049 2 RICVKNLPKY-VTEDRLRDFFSQK----GEITDAKLMRTKDGKS------------------------------------ 40 (731)
Q Consensus 2 ~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~g~~------------------------------------ 40 (731)
||-|-|+.|+ +.-.||.-+|+.| |.|.+|.|.....|+.
T Consensus 176 RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~~~ 255 (650)
T KOG2318|consen 176 RLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDVDR 255 (650)
T ss_pred eeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhHHH
Confidence 7889999998 8899999999988 6899999877543321
Q ss_pred ------------ceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 037049 41 ------------RQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEI 75 (731)
Q Consensus 41 ------------~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~ 75 (731)
.=||.|+|.+...|....+.++|..+......+.+
T Consensus 256 ~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 256 EKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred HHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 12799999999999999999999999865555544
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.49 E-value=10 Score=31.40 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHhcCC-CccCCceEEEEeCCCC--ccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCC
Q 037049 533 ALVVFLEPVEAAAAFKGLAY-KRYKGVPLYLEWAPSD--VLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADID 609 (731)
Q Consensus 533 afV~F~~~e~A~~Ai~~lng-~~~~gr~l~v~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (731)
|+|.|....-|..-++.-.. ..+++..+.|.-.+-- .....+-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv---------------------------------- 46 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQV---------------------------------- 46 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEE----------------------------------
Confidence 68999999999887754222 2355666666555421 1111100
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHHhc
Q 037049 610 PDRVESRSLFVKNLNFKTCDENLRKHFG 637 (731)
Q Consensus 610 ~~~~~~~~L~V~NLp~~~tee~L~~~F~ 637 (731)
......++|.|.|||....+++|++..+
T Consensus 47 ~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 47 FSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 0233567899999999999999998775
No 221
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=57.64 E-value=5.2 Score=49.54 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.8
Q ss_pred hhhcccccCCC
Q 037049 211 YFKSRVKKDWS 221 (731)
Q Consensus 211 ~~~~~~~~~~~ 221 (731)
....|+.+.|.
T Consensus 131 i~~~~~~r~l~ 141 (2849)
T PTZ00415 131 IIKRRRARHLA 141 (2849)
T ss_pred EeehHHhhccc
Confidence 33444444443
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.44 E-value=20 Score=29.77 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhc
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFG 516 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~ 516 (731)
..+.++|.|.|||...++++|++..+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 44577899999999889999876544
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=55.65 E-value=41 Score=33.85 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCH
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIP 350 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~ 350 (731)
..-|+++|||.++...||+..+...|-+ -..|.. .| +.|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw---kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW---KG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEee---ec-CCcceeEecCCc
Confidence 3469999999999999999999887632 223332 23 677899999764
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=53.95 E-value=18 Score=33.32 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=65.1
Q ss_pred HHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccc
Q 037049 509 GELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGE 588 (731)
Q Consensus 509 ~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 588 (731)
..+..++...|.+.-..+ ..++..++|.+.+++.+++.. ....|+|..+.+..-.........
T Consensus 36 ~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~-------------- 98 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEV-------------- 98 (153)
T ss_pred HHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccc--------------
Confidence 344444445555543333 578999999999999888753 445677776666554322100000
Q ss_pred hhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCC-CCHHHHHHHhccccCcccEEEEEEeee
Q 037049 589 HDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFK-TCDENLRKHFGEHIKEGRILSVKVKKH 653 (731)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~-~tee~L~~~F~~~G~~~~I~~vki~~~ 653 (731)
.......=|.|.|||.. ++++-|+.+-+.+|. ++.+.....
T Consensus 99 ---------------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~---~i~vD~~t~ 140 (153)
T PF14111_consen 99 ---------------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE---PIEVDENTL 140 (153)
T ss_pred ---------------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCC---eEEEEcCCC
Confidence 00011123888999986 688999999999999 887765543
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.26 E-value=16 Score=32.14 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=31.0
Q ss_pred CeEEEeCCCCCC---------CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHH
Q 037049 616 RSLFVKNLNFKT---------CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATN 677 (731)
Q Consensus 616 ~~L~V~NLp~~~---------tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~ 677 (731)
.++.|-|+|... +-+.|.+.|..|.+ + .++....+. | +.|+++|.|..--...+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p---~-kv~~l~~~~-g---h~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNP---L-KVKPLYGKQ-G---HTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH------S-EEEEEEETT-E---EEEEEEEE--SSHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCC---c-eeEECcCCC-C---CcEEEEEEECCChHHHH
Confidence 357778886543 56899999999987 4 577777652 2 89999999987554443
No 226
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.83 E-value=2.9 Score=44.27 Aligned_cols=76 Identities=7% Similarity=-0.067 Sum_probs=64.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
+.|+..||...+++++.-+|..||-|..+.+.+.-+ |...-.+||+-.. ..|..||..+....+.|..+++.++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 567889999999999999999999999988877666 6778889988754 678888888888888899999888753
No 227
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.94 E-value=33 Score=26.93 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=46.9
Q ss_pred HHHHHHHhcCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 313 DELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 313 ~~l~~~F~~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
++|.+-|...| .|..|.-+..+.++.+...-||.+....+... .++=..+.|..+.|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46888888888 78888888877677777788888877765333 34447788999999887644
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.66 E-value=30 Score=30.48 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=31.0
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHH-HHHH
Q 037049 300 RLFVRNLPYT---------ATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA-SRAI 357 (731)
Q Consensus 300 ~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A-~~Al 357 (731)
.+.|-|+|.. ++.+.|+..|..|.++ .++.+.+. . -+.|+++|.|...-.- ..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~-~-gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK-Q-GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET-T-EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC-C-CCcEEEEEEECCChHHHHHHH
Confidence 5667787654 3557899999999876 46666766 3 4799999999765443 3444
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.64 E-value=32 Score=36.27 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=44.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHH
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ 681 (731)
.+|-|.++|...-.+||...|+.|++ ..++|+.--++ .||-.|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~----kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN----KGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc----CCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45899999999999999999999987 44555543212 299999999999999874
No 230
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.48 E-value=16 Score=36.40 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=28.3
Q ss_pred CCcEEEEeCCCCCC------------CHHHHHHHhcccCceeEEEcc
Q 037049 493 SNHVFLVKNLPYDS------------SEGELAKMFGKFGSLDKVILP 527 (731)
Q Consensus 493 ~~~~l~V~NLp~~~------------te~~L~~~F~~~G~i~~v~l~ 527 (731)
.+.+|++-+||..| +++.|+..|..||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34578888887554 678999999999999988776
No 231
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=38.99 E-value=10 Score=35.06 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=4.9
Q ss_pred CceeEEEeec
Q 037049 68 TCRISCEIAR 77 (731)
Q Consensus 68 g~~i~v~~a~ 77 (731)
|.+|+|.+|.
T Consensus 59 g~~~kv~lAt 68 (149)
T PF03066_consen 59 GKPIKVPLAT 68 (149)
T ss_dssp SCEEEEEEEE
T ss_pred CCeeEEEEEE
Confidence 4445555544
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=38.36 E-value=44 Score=34.08 Aligned_cols=85 Identities=12% Similarity=0.221 Sum_probs=62.1
Q ss_pred hcccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCC-------CCCceeEEEEEecCHHHHHHH----HHHc
Q 037049 292 QQEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD-------TKRSKGIAYVLYAIPESASRA----IEVL 360 (731)
Q Consensus 292 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~-------~g~~~g~afV~F~~~e~A~~A----l~~l 360 (731)
+.+...++.|.+.|+..+++-..+...|-.||+|++|.++.+.. ......-..+.|-+.+.+... ++.|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 34467788999999999999999999999999999999997751 112335678999999887543 3333
Q ss_pred CC--cccCCeEEEEEecC
Q 037049 361 DN--SIFQGRLLHVMPAR 376 (731)
Q Consensus 361 ~~--~~~~g~~l~V~~a~ 376 (731)
.- ..+....|.+.+..
T Consensus 89 sEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhcCCcceeEEEEE
Confidence 32 44556777777765
No 233
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.18 E-value=27 Score=32.14 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHhc-CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 309 TATEDELREHFSK-FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 309 ~~t~~~l~~~F~~-~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++..++ ......+.|..+.+..-.+
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcc
Confidence 3566667666654 343223333221 3468999999999999999 4556777787777766553
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.88 E-value=34 Score=36.20 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=46.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEee-cCC--CCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE-ITDAKLMR-TKD--GKSRQFAFIGFRTEQEAEEAIKYFNKSYL 66 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~-~~~--g~~~g~afV~f~~~~~a~~ai~~~~g~~~ 66 (731)
++|-|.+||+..++.+|.+....+-. +....... +.. ..-.+.|||.|..+++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46889999999999999887777632 33333332 111 22367899999999997777777777643
No 235
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.94 E-value=78 Score=24.89 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=45.3
Q ss_pred HHHHHHHhcCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 313 DELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 313 ~~l~~~F~~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
.+|.+-|..+| .+..|.-+..+.++.+...=||......+-.. .|+=+.++|+.+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46888889888 78888888888666666667777765543333 34457788999999876643
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.28 E-value=79 Score=31.90 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=38.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCcee-EEEccCCCCEEEEEeCCH
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLD-KVILPSTKTLALVVFLEP 540 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~-~v~l~~~kg~afV~F~~~ 540 (731)
..+-|++.||+-++--.+|+..+.+.|.+- ++...-..|-||++|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 345699999999999999999998877543 666666788999999754
No 237
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=33.11 E-value=67 Score=25.24 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHhhcCC-CeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 15 DRLRDFFSQKG-EITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 15 ~~l~~~F~~~G-~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|.+-|...| ++..|+-|+.++ +.....=||+.....+-.. .|+=..++|.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 588999888888 5566778888877654444 355667889998888443
No 238
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.01 E-value=77 Score=24.90 Aligned_cols=60 Identities=15% Similarity=0.347 Sum_probs=44.1
Q ss_pred HHHHHHhhcCC-CeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 15 DRLRDFFSQKG-EITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 15 ~~l~~~F~~~G-~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|.+-|...| +|..|.-++.+. +.....-||++....+...+ ++=..+.+..++|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 46777888888 588888888874 66668889999877663333 45566888898888554
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.79 E-value=6.7 Score=43.02 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeE
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRL 369 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~ 369 (731)
-..|+||++|++++.+-.+|..+++.+--+..+.+.......+...+++|+|.---....|+..||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 45679999999999999999999999866666655443333344567899998888888888888887665433
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=30.02 E-value=1.9e+02 Score=23.87 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=43.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc
Q 037049 301 LFVRNLPYTATEDELREHFSK-FG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360 (731)
Q Consensus 301 l~v~nLp~~~t~~~l~~~F~~-~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l 360 (731)
-|+--++..++..+|++.++. || .|.+|..+.-+ ....-|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 344467889999999999987 66 67888777654 23456999999998888776444
No 241
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=29.44 E-value=1e+02 Score=37.38 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.2
Q ss_pred CHHHHHHHHhcCC
Q 037049 311 TEDELREHFSKFG 323 (731)
Q Consensus 311 t~~~l~~~F~~~G 323 (731)
+-++|..++..+-
T Consensus 427 s~eel~~lL~~~~ 439 (840)
T PF04147_consen 427 SHEELLELLDGYS 439 (840)
T ss_pred CHHHHHHHHhcCC
Confidence 6688989988774
No 242
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.46 E-value=11 Score=41.35 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=53.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i 71 (731)
|.||++|++++++-++|..++..+--+..+-+..+.- .+...+++|+|.---.-..|+..||+..+....+
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4578999999999999999999986666665544433 4556778999987777777777788877665443
No 243
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.40 E-value=63 Score=34.25 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=48.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
+.+.|++||...|+++|.+....|-. ++...........-...-.+.|||.|...++...-...++|+++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~--~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPE--HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCcc--ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45899999999999999999888754 23333333111010111367899999999997777777777665
No 244
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.15 E-value=2.5e+02 Score=22.67 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=42.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc
Q 037049 301 LFVRNLPYTATEDELREHFSK-FG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360 (731)
Q Consensus 301 l~v~nLp~~~t~~~l~~~F~~-~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l 360 (731)
-|+-.++..++..+|++.++. || .|..|..+.-+ . ...-|||.+.....|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 455578899999999999887 66 67787776654 2 3456999999888887765443
No 245
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=12 Score=39.87 Aligned_cols=77 Identities=4% Similarity=-0.131 Sum_probs=62.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
+.|+..||...++.++.-+|..||.|..+.+.+....|...-.+||+-.. .++..+|..+....+.|..++|.++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 56788999999999999999999999888887776566667788888654 467788877777888888888887654
No 246
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.59 E-value=1.7e+02 Score=22.54 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=15.4
Q ss_pred HHHHHHhhcCCCeEEEEEe
Q 037049 15 DRLRDFFSQKGEITDAKLM 33 (731)
Q Consensus 15 ~~l~~~F~~~G~i~~v~i~ 33 (731)
.+|+++|++.|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998765553
No 247
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.35 E-value=1.7e+02 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.2
Q ss_pred HHHHHHhccccCcccEEEEEEeee
Q 037049 630 ENLRKHFGEHIKEGRILSVKVKKH 653 (731)
Q Consensus 630 e~L~~~F~~~G~~~~I~~vki~~~ 653 (731)
.+||++|+..|. |.-+.+-..
T Consensus 9 ~~iR~~fs~lG~---I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGE---IAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCc---EEEEEEccc
Confidence 689999999998 776555443
No 248
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.31 E-value=1.1e+02 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCCeEEEeCCCCCC------------CHHHHHHHhccccCcccEEEEEEeee
Q 037049 614 ESRSLFVKNLNFKT------------CDENLRKHFGEHIKEGRILSVKVKKH 653 (731)
Q Consensus 614 ~~~~L~V~NLp~~~------------tee~L~~~F~~~G~~~~I~~vki~~~ 653 (731)
...|||+-+||-.| ++..|+..|..||. |..|.|+..
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~---ir~vdipic 196 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGE---IRNVDIPIC 196 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhcc---ceecCCccc
Confidence 34578888888665 67899999999999 999998864
Done!