Query 037049
Match_columns 731
No_of_seqs 357 out of 3944
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-40 5.4E-45 347.6 29.0 248 295-701 38-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 8.9E-40 3E-44 340.5 29.8 242 295-703 19-267 (284)
3 3smz_A Protein raver-1, ribonu 100.0 1.6E-39 5.5E-44 338.6 30.5 236 1-568 23-264 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-39 7.8E-44 338.8 28.2 241 1-568 42-291 (292)
5 3md3_A Nuclear and cytoplasmic 100.0 5.6E-30 1.9E-34 243.7 22.0 164 2-376 2-165 (166)
6 4f02_A Polyadenylate-binding p 100.0 3.3E-30 1.1E-34 255.9 19.8 165 1-378 16-181 (213)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.3E-29 4.6E-34 241.7 21.4 162 1-375 4-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 2.4E-29 8.1E-34 239.6 21.9 162 1-375 3-167 (167)
9 1l3k_A Heterogeneous nuclear r 100.0 3.9E-29 1.3E-33 244.9 22.0 171 1-380 14-185 (196)
10 4f02_A Polyadenylate-binding p 100.0 1.9E-29 6.6E-34 250.3 18.8 164 296-567 13-180 (213)
11 2qfj_A FBP-interacting repress 100.0 4.6E-29 1.6E-33 248.4 20.1 178 1-380 29-207 (216)
12 3md3_A Nuclear and cytoplasmic 100.0 1.3E-28 4.3E-33 234.3 20.9 161 495-699 1-166 (166)
13 2cjk_A Nuclear polyadenylated 100.0 1.9E-29 6.3E-34 240.5 13.5 162 1-378 4-166 (167)
14 3nmr_A Cugbp ELAV-like family 100.0 2.4E-28 8.1E-33 234.6 21.3 163 1-376 4-175 (175)
15 1b7f_A Protein (SXL-lethal pro 100.0 3E-28 1E-32 232.3 21.1 159 493-697 2-168 (168)
16 1fxl_A Paraneoplastic encephal 100.0 3.9E-28 1.3E-32 231.2 20.6 159 493-697 1-167 (167)
17 2g4b_A Splicing factor U2AF 65 100.0 4.1E-28 1.4E-32 232.4 19.4 159 493-698 3-172 (172)
18 2qfj_A FBP-interacting repress 100.0 2E-27 6.8E-32 236.6 23.4 174 493-701 27-206 (216)
19 1l3k_A Heterogeneous nuclear r 100.0 7.8E-28 2.7E-32 235.7 19.8 173 490-704 9-187 (196)
20 3tyt_A Heterogeneous nuclear r 100.0 1.3E-27 4.5E-32 234.6 19.6 190 493-697 3-204 (205)
21 2yh0_A Splicing factor U2AF 65 100.0 2.9E-27 9.9E-32 232.0 21.6 183 493-702 3-196 (198)
22 2g4b_A Splicing factor U2AF 65 100.0 1.9E-27 6.4E-32 227.8 19.3 78 299-376 95-172 (172)
23 3nmr_A Cugbp ELAV-like family 100.0 2.1E-27 7.1E-32 228.0 19.5 161 297-566 2-175 (175)
24 2cjk_A Nuclear polyadenylated 99.9 5.3E-28 1.8E-32 230.4 13.4 160 493-701 2-167 (167)
25 2adc_A Polypyrimidine tract-bi 99.9 5.2E-27 1.8E-31 235.6 21.1 195 490-700 30-228 (229)
26 2yh0_A Splicing factor U2AF 65 99.9 7E-27 2.4E-31 229.3 21.2 83 297-379 113-195 (198)
27 1qm9_A Polypyrimidine tract-bi 99.9 1E-26 3.6E-31 228.1 18.9 191 494-700 3-197 (198)
28 1fje_B Nucleolin RBD12, protei 99.9 1.9E-26 6.5E-31 221.5 18.8 161 490-700 9-174 (175)
29 3pgw_A U1-A; protein-RNA compl 99.9 4.7E-26 1.6E-30 236.4 22.8 200 490-699 5-282 (282)
30 2adc_A Polypyrimidine tract-bi 99.9 4.4E-26 1.5E-30 228.8 21.3 197 291-567 27-227 (229)
31 3pgw_A U1-A; protein-RNA compl 99.9 4E-26 1.4E-30 237.0 21.5 239 295-566 6-281 (282)
32 3sde_A Paraspeckle component 1 99.9 3.9E-26 1.3E-30 233.9 20.8 160 490-702 18-181 (261)
33 1fje_B Nucleolin RBD12, protei 99.9 5.8E-27 2E-31 225.1 13.3 163 295-568 10-174 (175)
34 3tyt_A Heterogeneous nuclear r 99.9 2.8E-26 9.5E-31 225.1 16.6 191 297-565 3-204 (205)
35 3sde_A Paraspeckle component 1 99.9 9E-26 3.1E-30 231.2 19.3 154 1-379 23-180 (261)
36 1qm9_A Polypyrimidine tract-bi 99.9 6.9E-26 2.4E-30 222.2 16.6 190 298-567 3-196 (198)
37 4f25_A Polyadenylate-binding p 99.8 7.6E-21 2.6E-25 168.3 11.0 107 615-729 5-111 (115)
38 2kn4_A Immunoglobulin G-bindin 99.8 6.6E-20 2.3E-24 172.5 14.6 84 297-380 69-152 (158)
39 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 7E-24 169.1 13.9 142 528-702 11-152 (158)
40 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-19 4.4E-24 155.5 11.1 78 1-78 20-98 (99)
41 2i2y_A Fusion protein consists 99.8 2.3E-19 8E-24 167.1 12.2 138 528-701 11-149 (150)
42 4f25_A Polyadenylate-binding p 99.8 4.4E-19 1.5E-23 157.0 11.7 80 298-379 5-84 (115)
43 4fxv_A ELAV-like protein 1; RN 99.8 8.2E-19 2.8E-23 150.4 11.2 83 612-699 16-98 (99)
44 2i2y_A Fusion protein consists 99.7 3E-18 1E-22 159.5 10.6 79 296-379 71-149 (150)
45 3s8s_A Histone-lysine N-methyl 99.7 2.6E-17 8.9E-22 143.8 12.1 88 613-705 4-91 (110)
46 3p5t_L Cleavage and polyadenyl 99.7 6.9E-18 2.4E-22 142.3 7.1 79 2-80 3-84 (90)
47 3md1_A Nuclear and cytoplasmic 99.7 3.3E-17 1.1E-21 135.9 11.1 79 1-79 2-81 (83)
48 2lxi_A RNA-binding protein 10; 99.7 6.9E-18 2.4E-22 142.3 6.7 83 298-380 1-85 (91)
49 3s8s_A Histone-lysine N-methyl 99.7 4.8E-17 1.6E-21 142.2 12.2 82 296-377 4-85 (110)
50 2lxi_A RNA-binding protein 10; 99.7 5E-18 1.7E-22 143.2 5.7 82 616-702 2-85 (91)
51 2lkz_A RNA-binding protein 5; 99.7 8.9E-18 3.1E-22 142.2 7.1 78 1-78 10-94 (95)
52 1whw_A Hypothetical protein ri 99.7 4.7E-17 1.6E-21 139.9 11.6 81 1-81 9-90 (99)
53 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.9E-17 1.3E-21 136.7 10.6 79 1-79 7-86 (87)
54 2lkz_A RNA-binding protein 5; 99.7 1.9E-17 6.6E-22 140.2 7.9 83 614-699 8-94 (95)
55 2dnz_A Probable RNA-binding pr 99.7 1.1E-16 3.7E-21 136.5 12.5 81 1-81 6-87 (95)
56 2do4_A Squamous cell carcinoma 99.7 8.8E-17 3E-21 138.4 11.5 79 1-79 18-96 (100)
57 3r27_A HnRNP L, heterogeneous 99.7 8.2E-17 2.8E-21 136.1 11.0 80 611-701 17-98 (100)
58 3ns6_A Eukaryotic translation 99.7 2E-17 6.7E-22 142.3 7.2 79 1-79 7-93 (100)
59 3md1_A Nuclear and cytoplasmic 99.7 1.4E-16 5E-21 131.9 12.1 80 299-378 2-81 (83)
60 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.9E-21 133.9 11.2 83 296-378 4-86 (87)
61 2fy1_A RNA-binding motif prote 99.7 1.2E-16 4.1E-21 141.4 11.9 81 1-81 8-88 (116)
62 2dgs_A DAZ-associated protein 99.7 1.6E-16 5.5E-21 136.5 12.3 79 1-80 11-90 (99)
63 2x1f_A MRNA 3'-END-processing 99.7 9.3E-17 3.2E-21 137.1 10.6 79 1-79 3-82 (96)
64 2dnh_A Bruno-like 5, RNA bindi 99.7 1.7E-16 5.7E-21 138.0 12.4 80 1-80 16-98 (105)
65 2cq0_A Eukaryotic translation 99.7 9.6E-17 3.3E-21 139.0 10.5 80 1-80 16-96 (103)
66 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.5E-21 138.9 11.3 79 1-79 24-103 (106)
67 1s79_A Lupus LA protein; RRM, 99.7 7.5E-17 2.6E-21 139.0 9.4 76 2-78 13-88 (103)
68 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-16 4E-21 141.5 10.8 81 1-81 26-107 (115)
69 1x5s_A Cold-inducible RNA-bind 99.7 1.3E-16 4.6E-21 137.8 10.8 81 1-81 13-94 (102)
70 1x5t_A Splicing factor 3B subu 99.7 8.4E-17 2.9E-21 137.4 9.4 80 1-80 6-87 (96)
71 2d9p_A Polyadenylate-binding p 99.7 2E-16 6.7E-21 137.0 11.7 80 1-81 16-95 (103)
72 2la6_A RNA-binding protein FUS 99.7 1.4E-16 4.8E-21 136.8 10.7 77 1-77 14-99 (99)
73 2do4_A Squamous cell carcinoma 99.7 3.8E-16 1.3E-20 134.4 13.4 84 295-379 14-97 (100)
74 2wbr_A GW182, gawky, LD47780P; 99.7 1.5E-16 5.3E-21 129.2 9.8 73 614-697 6-78 (89)
75 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.7E-16 6E-21 132.1 10.5 82 295-376 4-85 (85)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.1E-16 7.1E-21 131.6 10.9 82 612-698 4-85 (85)
77 2dgx_A KIAA0430 protein; RRM d 99.7 1.2E-16 4.2E-21 136.3 9.7 78 1-80 10-91 (96)
78 2jrs_A RNA-binding protein 39; 99.7 2.9E-16 1E-20 136.9 12.1 84 295-378 23-106 (108)
79 2cqc_A Arginine/serine-rich sp 99.7 3E-16 1E-20 133.7 11.9 83 295-377 12-94 (95)
80 2ywk_A Putative RNA-binding pr 99.7 1.5E-16 5.1E-21 135.6 10.0 77 1-77 17-93 (95)
81 2x1f_A MRNA 3'-END-processing 99.7 2.2E-16 7.4E-21 134.8 10.9 85 614-703 1-85 (96)
82 2jrs_A RNA-binding protein 39; 99.7 2.7E-16 9.1E-21 137.2 11.6 87 611-702 22-108 (108)
83 1whw_A Hypothetical protein ri 99.7 2.8E-16 9.5E-21 135.0 11.6 86 295-380 5-90 (99)
84 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4E-21 138.2 9.3 80 1-80 13-93 (102)
85 2lea_A Serine/arginine-rich sp 99.7 3.9E-17 1.3E-21 148.6 6.3 124 532-702 6-129 (135)
86 2dnz_A Probable RNA-binding pr 99.7 3.4E-16 1.2E-20 133.4 11.8 85 613-702 3-87 (95)
87 2mss_A Protein (musashi1); RNA 99.7 8E-17 2.8E-21 130.7 7.5 74 2-76 1-75 (75)
88 1x4h_A RNA-binding protein 28; 99.7 2.6E-16 8.7E-21 138.4 11.2 81 1-81 16-103 (111)
89 2cq0_A Eukaryotic translation 99.7 3.4E-16 1.2E-20 135.5 11.9 86 295-380 12-97 (103)
90 2e5h_A Zinc finger CCHC-type a 99.7 3.6E-16 1.2E-20 132.9 11.8 83 611-698 12-94 (94)
91 2div_A TRNA selenocysteine ass 99.7 1.4E-16 4.8E-21 136.9 9.2 79 1-79 10-94 (99)
92 2dhg_A TRNA selenocysteine ass 99.7 2.5E-16 8.5E-21 136.6 10.9 81 1-81 10-92 (104)
93 2cqc_A Arginine/serine-rich sp 99.7 3.8E-16 1.3E-20 133.0 11.8 84 611-699 11-94 (95)
94 2cpf_A RNA binding motif prote 99.7 2.4E-16 8.1E-21 135.2 10.5 81 1-81 6-90 (98)
95 2dgo_A Cytotoxic granule-assoc 99.7 6.4E-16 2.2E-20 136.7 13.6 87 295-381 12-98 (115)
96 2cpz_A CUG triplet repeat RNA- 99.7 5.5E-16 1.9E-20 137.1 13.1 87 294-380 21-107 (115)
97 1p27_B RNA-binding protein 8A; 99.7 3E-16 1E-20 136.6 11.2 85 295-379 20-104 (106)
98 2dgs_A DAZ-associated protein 99.7 5.2E-16 1.8E-20 133.3 12.5 86 611-702 6-91 (99)
99 2la6_A RNA-binding protein FUS 99.7 4.1E-16 1.4E-20 133.9 11.7 82 295-376 10-99 (99)
100 3p5t_L Cleavage and polyadenyl 99.7 8.7E-17 3E-21 135.5 7.3 81 299-379 2-84 (90)
101 3n9u_C Cleavage and polyadenyl 99.7 2.2E-16 7.4E-21 147.1 10.7 78 1-78 56-136 (156)
102 4a8x_A RNA-binding protein wit 99.7 2E-16 6.8E-21 132.7 9.5 78 1-78 5-84 (88)
103 3ucg_A Polyadenylate-binding p 99.7 2.3E-16 7.7E-21 132.7 9.8 77 1-78 7-84 (89)
104 3ns6_A Eukaryotic translation 99.7 8.8E-17 3E-21 138.2 7.2 85 614-703 5-96 (100)
105 2cq3_A RNA-binding protein 9; 99.7 6E-16 2E-20 134.0 12.4 79 1-80 16-94 (103)
106 2dgv_A HnRNP M, heterogeneous 99.7 3.4E-16 1.2E-20 132.5 10.6 79 1-80 9-87 (92)
107 2e5h_A Zinc finger CCHC-type a 99.7 3.1E-16 1.1E-20 133.3 10.4 82 295-376 13-94 (94)
108 1x5u_A Splicing factor 3B subu 99.7 4.2E-16 1.5E-20 135.4 11.4 86 295-380 12-97 (105)
109 3s7r_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 130.8 10.3 75 1-76 12-87 (87)
110 2dnm_A SRP46 splicing factor; 99.7 2.8E-16 9.4E-21 136.1 9.9 86 295-380 10-95 (103)
111 1p1t_A Cleavage stimulation fa 99.7 2.3E-16 7.9E-21 136.9 9.3 79 1-79 9-88 (104)
112 2cqd_A RNA-binding region cont 99.7 3.3E-16 1.1E-20 138.8 10.5 81 1-82 18-99 (116)
113 2do0_A HnRNP M, heterogeneous 99.7 6.9E-16 2.4E-20 136.3 12.5 78 1-78 16-93 (114)
114 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-16 3.5E-21 130.7 6.6 75 1-76 1-76 (77)
115 2dgo_A Cytotoxic granule-assoc 99.7 7.4E-16 2.5E-20 136.3 12.6 88 611-703 11-98 (115)
116 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.8E-16 1.3E-20 147.6 11.4 143 535-703 11-155 (165)
117 1x5u_A Splicing factor 3B subu 99.7 5.3E-16 1.8E-20 134.8 11.3 87 611-702 11-97 (105)
118 1x5s_A Cold-inducible RNA-bind 99.7 3.6E-16 1.2E-20 135.1 10.2 87 611-702 8-94 (102)
119 3ulh_A THO complex subunit 4; 99.7 4.3E-16 1.5E-20 135.9 10.7 77 1-77 30-106 (107)
120 1x5t_A Splicing factor 3B subu 99.6 3.6E-16 1.2E-20 133.5 9.9 84 297-380 4-88 (96)
121 1x4h_A RNA-binding protein 28; 99.6 6E-16 2E-20 136.0 11.6 86 295-380 12-103 (111)
122 1sjq_A Polypyrimidine tract-bi 99.6 2.4E-16 8.3E-21 134.7 8.7 82 611-703 12-95 (105)
123 2dnm_A SRP46 splicing factor; 99.6 4.4E-16 1.5E-20 134.8 10.4 87 611-702 9-95 (103)
124 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.4E-16 1.8E-20 134.3 10.9 78 1-79 16-93 (103)
125 3s7r_A Heterogeneous nuclear r 99.6 9.2E-16 3.2E-20 128.3 11.9 80 295-375 8-87 (87)
126 2dnh_A Bruno-like 5, RNA bindi 99.6 9.3E-16 3.2E-20 133.3 12.4 84 296-380 13-99 (105)
127 2dng_A Eukaryotic translation 99.6 4.6E-16 1.6E-20 134.6 10.4 78 1-80 16-94 (103)
128 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.5E-16 1.2E-20 135.2 9.6 86 295-380 9-94 (102)
129 2cph_A RNA binding motif prote 99.6 8.3E-16 2.8E-20 134.1 12.0 87 611-702 11-99 (107)
130 2cpf_A RNA binding motif prote 99.6 6.7E-16 2.3E-20 132.3 11.1 85 296-380 3-90 (98)
131 2cpe_A RNA-binding protein EWS 99.6 4.2E-16 1.4E-20 137.4 10.0 80 1-80 16-104 (113)
132 2d9p_A Polyadenylate-binding p 99.6 9.1E-16 3.1E-20 132.8 12.0 85 611-702 11-95 (103)
133 2ki2_A SS-DNA binding protein 99.6 6.9E-17 2.4E-21 136.2 4.7 79 1-80 2-81 (90)
134 2wbr_A GW182, gawky, LD47780P; 99.6 4.6E-16 1.6E-20 126.4 9.2 76 491-566 4-79 (89)
135 3ex7_B RNA-binding protein 8A; 99.6 4.5E-16 1.5E-20 140.2 10.3 81 1-81 23-104 (126)
136 2dgw_A Probable RNA-binding pr 99.6 6E-16 2.1E-20 130.6 10.4 77 1-79 11-87 (91)
137 2cph_A RNA binding motif prote 99.6 7E-16 2.4E-20 134.6 11.1 86 295-380 12-99 (107)
138 1oo0_B CG8781-PA, drosophila Y 99.6 4.9E-16 1.7E-20 136.3 10.1 85 295-379 23-107 (110)
139 3q2s_C Cleavage and polyadenyl 99.6 2.9E-16 1E-20 156.2 9.8 81 297-377 67-149 (229)
140 2khc_A Testis-specific RNP-typ 99.6 2.5E-16 8.5E-21 140.1 8.3 77 1-77 41-118 (118)
141 1oo0_B CG8781-PA, drosophila Y 99.6 6.5E-16 2.2E-20 135.5 10.8 87 611-702 22-108 (110)
142 1p1t_A Cleavage stimulation fa 99.6 3.7E-16 1.3E-20 135.6 9.1 91 614-709 7-97 (104)
143 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.1E-16 7.1E-21 136.0 7.4 77 1-79 20-98 (100)
144 3r27_A HnRNP L, heterogeneous 99.6 7.6E-16 2.6E-20 130.2 10.5 79 490-568 17-97 (100)
145 2ywk_A Putative RNA-binding pr 99.6 8.1E-16 2.8E-20 131.0 10.8 82 295-377 13-94 (95)
146 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.2E-16 2.1E-20 146.1 11.1 86 295-380 69-154 (165)
147 4a8x_A RNA-binding protein wit 99.6 6.8E-16 2.3E-20 129.4 10.1 83 297-379 3-86 (88)
148 2div_A TRNA selenocysteine ass 99.6 6.4E-16 2.2E-20 132.7 10.1 85 295-379 6-95 (99)
149 3ucg_A Polyadenylate-binding p 99.6 9.6E-16 3.3E-20 128.8 10.9 81 297-378 5-85 (89)
150 2cqp_A RNA-binding protein 12; 99.6 2.3E-16 7.9E-21 135.2 7.2 78 1-78 16-94 (98)
151 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.7E-15 5.8E-20 131.1 12.6 85 611-702 11-95 (103)
152 2kt5_A RNA and export factor-b 99.6 9.4E-16 3.2E-20 137.6 11.3 80 1-80 36-115 (124)
153 2hvz_A Splicing factor, argini 99.6 2E-16 6.8E-21 136.5 6.7 99 616-724 1-100 (101)
154 1x4d_A Matrin 3; structural ge 99.6 3.7E-16 1.3E-20 133.6 8.2 75 1-80 16-93 (102)
155 2cq3_A RNA-binding protein 9; 99.6 2.1E-15 7.1E-20 130.5 13.1 85 611-702 11-95 (103)
156 1x4b_A Heterogeneous nuclear r 99.6 5.7E-16 2E-20 137.2 9.7 80 1-81 28-108 (116)
157 1s79_A Lupus LA protein; RRM, 99.6 3.9E-16 1.3E-20 134.6 8.3 84 612-702 8-91 (103)
158 2ek1_A RNA-binding protein 12; 99.6 2.5E-16 8.7E-21 134.1 7.1 77 1-77 16-93 (95)
159 2khc_A Testis-specific RNP-typ 99.6 8.7E-16 3E-20 136.5 10.7 84 293-376 35-118 (118)
160 1wez_A HnRNP H', FTP-3, hetero 99.6 5.6E-16 1.9E-20 133.5 9.2 78 1-80 16-93 (102)
161 2dgx_A KIAA0430 protein; RRM d 99.6 1.2E-15 4E-20 130.1 11.1 83 612-702 6-92 (96)
162 2dgp_A Bruno-like 4, RNA bindi 99.6 6.4E-16 2.2E-20 134.6 9.6 86 295-380 10-98 (106)
163 2dng_A Eukaryotic translation 99.6 1.6E-15 5.5E-20 131.2 12.0 84 295-380 12-95 (103)
164 1wi8_A EIF-4B, eukaryotic tran 99.6 6.8E-16 2.3E-20 133.9 9.6 78 1-80 16-95 (104)
165 2cq4_A RNA binding motif prote 99.6 4.2E-16 1.4E-20 137.7 8.4 78 1-79 26-104 (114)
166 2err_A Ataxin-2-binding protei 99.6 5E-16 1.7E-20 135.8 8.7 78 1-79 30-107 (109)
167 2cq1_A PTB-like protein L; RRM 99.6 1.9E-15 6.4E-20 129.4 12.0 81 611-702 11-93 (101)
168 2dh8_A DAZ-associated protein 99.6 3.7E-16 1.3E-20 135.8 7.6 79 1-80 17-96 (105)
169 2dgp_A Bruno-like 4, RNA bindi 99.6 9.5E-16 3.3E-20 133.4 10.3 87 611-702 9-98 (106)
170 2hgl_A HNRPF protein, heteroge 99.6 3.3E-16 1.1E-20 141.7 7.5 77 1-78 45-124 (136)
171 1wg5_A Heterogeneous nuclear r 99.6 7.3E-16 2.5E-20 133.6 9.4 78 1-79 16-94 (104)
172 2rs2_A Musashi-1, RNA-binding 99.6 8.4E-16 2.9E-20 134.3 9.9 78 1-79 26-104 (109)
173 2kxn_B Transformer-2 protein h 99.6 9.3E-16 3.2E-20 138.2 10.4 86 611-701 42-127 (129)
174 2cqd_A RNA-binding region cont 99.6 1.7E-15 5.7E-20 134.2 11.9 85 295-380 14-98 (116)
175 1wex_A Hypothetical protein (r 99.6 1.5E-15 5.1E-20 130.8 11.2 81 611-702 11-93 (104)
176 2kxn_B Transformer-2 protein h 99.6 7.5E-16 2.6E-20 138.8 9.7 85 295-379 43-127 (129)
177 1x4e_A RNA binding motif, sing 99.6 1.8E-16 6.3E-21 131.9 5.2 77 1-77 6-83 (85)
178 2db1_A Heterogeneous nuclear r 99.6 4.2E-16 1.5E-20 138.3 7.8 77 1-78 18-97 (118)
179 2dhg_A TRNA selenocysteine ass 99.6 1E-15 3.4E-20 132.8 10.1 85 295-380 6-92 (104)
180 1x5o_A RNA binding motif, sing 99.6 1.4E-15 4.8E-20 134.3 11.2 79 1-79 26-112 (114)
181 1x4d_A Matrin 3; structural ge 99.6 7.9E-16 2.7E-20 131.5 9.1 80 611-701 11-93 (102)
182 2dis_A Unnamed protein product 99.6 9.4E-16 3.2E-20 134.2 9.9 81 1-81 9-94 (109)
183 2cpe_A RNA-binding protein EWS 99.6 1.2E-15 4E-20 134.6 10.5 86 295-380 12-105 (113)
184 2fy1_A RNA-binding motif prote 99.6 1.9E-15 6.6E-20 133.6 11.9 84 296-380 5-88 (116)
185 2dnn_A RNA-binding protein 12; 99.6 8.5E-16 2.9E-20 133.5 9.3 75 2-78 18-92 (109)
186 2krb_A Eukaryotic translation 99.6 4E-16 1.4E-20 128.5 6.9 72 1-73 2-80 (81)
187 1sjq_A Polypyrimidine tract-bi 99.6 8.7E-16 3E-20 131.2 9.1 80 490-569 12-93 (105)
188 1x4a_A Splicing factor, argini 99.6 1.6E-15 5.5E-20 132.7 11.1 78 1-80 23-100 (109)
189 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.3E-20 133.2 10.2 87 293-380 20-106 (109)
190 2ad9_A Polypyrimidine tract-bi 99.6 1.3E-15 4.6E-20 133.5 10.3 81 611-702 27-109 (119)
191 3ulh_A THO complex subunit 4; 99.6 2E-15 7E-20 131.6 11.5 81 295-376 26-106 (107)
192 2cpi_A CCR4-NOT transcription 99.6 1.5E-15 5.2E-20 133.3 10.6 88 611-701 11-102 (111)
193 2nlw_A Eukaryotic translation 99.6 6.6E-16 2.3E-20 134.1 8.2 78 1-79 16-100 (105)
194 2jwn_A Embryonic polyadenylate 99.6 1.4E-15 4.7E-20 136.6 10.5 78 1-79 37-115 (124)
195 1wi8_A EIF-4B, eukaryotic tran 99.6 1.5E-15 5.1E-20 131.7 10.4 83 296-380 13-96 (104)
196 3n9u_C Cleavage and polyadenyl 99.6 1.8E-15 6E-20 140.9 11.4 81 297-377 54-136 (156)
197 2cpi_A CCR4-NOT transcription 99.6 6.4E-16 2.2E-20 135.6 7.9 80 1-80 16-102 (111)
198 2ad9_A Polypyrimidine tract-bi 99.6 1.7E-15 5.9E-20 132.8 10.5 75 1-80 32-108 (119)
199 2dgv_A HnRNP M, heterogeneous 99.6 2.1E-15 7.1E-20 127.6 10.7 84 612-702 5-88 (92)
200 2dh8_A DAZ-associated protein 99.6 1.4E-15 4.9E-20 132.0 9.9 85 295-380 13-97 (105)
201 2hvz_A Splicing factor, argini 99.6 1.2E-15 4.2E-20 131.5 9.4 76 1-80 1-76 (101)
202 2mss_A Protein (musashi1); RNA 99.6 6.5E-16 2.2E-20 125.2 7.2 75 300-375 1-75 (75)
203 1u6f_A Tcubp1, RNA-binding pro 99.6 3E-15 1E-19 137.2 12.5 86 295-380 39-124 (139)
204 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.3E-16 1.5E-20 134.0 6.4 83 294-378 15-98 (100)
205 2fc9_A NCL protein; structure 99.6 1.5E-15 5.1E-20 130.9 9.7 78 1-81 16-93 (101)
206 2dgw_A Probable RNA-binding pr 99.6 3.5E-15 1.2E-19 125.9 11.8 82 295-379 7-88 (91)
207 2cqp_A RNA-binding protein 12; 99.6 1.3E-15 4.4E-20 130.5 9.2 83 296-378 13-95 (98)
208 2lea_A Serine/arginine-rich sp 99.6 7.3E-16 2.5E-20 140.1 7.8 80 1-80 48-128 (135)
209 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.7E-15 9.1E-20 140.5 11.9 80 1-80 40-120 (156)
210 3ex7_B RNA-binding protein 8A; 99.6 1.8E-15 6.1E-20 136.2 10.2 87 611-702 18-104 (126)
211 3pgw_S U1-70K; protein-RNA com 99.6 3.8E-16 1.3E-20 170.1 6.9 86 612-702 99-184 (437)
212 1iqt_A AUF1, heterogeneous nuc 99.6 3.9E-16 1.3E-20 126.6 5.2 74 2-76 1-75 (75)
213 2cqg_A TDP-43, TAR DNA-binding 99.6 5.7E-15 1.9E-19 127.7 13.0 84 295-380 12-95 (103)
214 2do0_A HnRNP M, heterogeneous 99.6 4.8E-15 1.6E-19 130.9 12.6 84 295-379 12-95 (114)
215 2cpy_A RNA-binding protein 12; 99.6 5.8E-16 2E-20 136.6 6.7 78 1-79 16-94 (114)
216 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 130.3 8.0 81 297-377 14-94 (95)
217 1u6f_A Tcubp1, RNA-binding pro 99.6 3.5E-15 1.2E-19 136.8 12.1 87 611-702 38-124 (139)
218 1x4b_A Heterogeneous nuclear r 99.6 2.6E-15 8.8E-20 133.0 10.8 85 295-380 24-108 (116)
219 2lmi_A GRSF-1, G-rich sequence 99.6 4E-16 1.4E-20 136.0 5.4 77 1-78 12-91 (107)
220 2cqg_A TDP-43, TAR DNA-binding 99.6 5.7E-15 2E-19 127.7 12.6 86 611-703 11-96 (103)
221 1x4e_A RNA binding motif, sing 99.6 4.9E-16 1.7E-20 129.4 5.5 81 296-376 3-83 (85)
222 2err_A Ataxin-2-binding protei 99.6 1.7E-15 5.8E-20 132.4 9.2 84 611-701 25-108 (109)
223 2m2b_A RNA-binding protein 10; 99.6 6.2E-16 2.1E-20 140.1 6.5 86 611-702 19-110 (131)
224 2a3j_A U1 small nuclear ribonu 99.6 3.2E-15 1.1E-19 133.6 10.9 85 611-703 25-113 (127)
225 1why_A Hypothetical protein ri 99.6 3.1E-15 1.1E-19 127.8 10.4 74 1-79 18-93 (97)
226 3lqv_A PRE-mRNA branch site pr 99.6 9.9E-16 3.4E-20 135.5 7.5 80 295-377 5-84 (115)
227 2jvr_A Nucleolar protein 3; RN 99.6 1E-15 3.5E-20 133.2 7.3 75 1-78 29-104 (111)
228 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.4E-16 2.9E-20 125.3 6.4 76 299-375 1-76 (77)
229 2jwn_A Embryonic polyadenylate 99.6 2.8E-15 9.6E-20 134.5 10.4 86 293-379 31-116 (124)
230 1x4g_A Nucleolysin TIAR; struc 99.6 3.5E-15 1.2E-19 130.5 10.6 76 1-81 26-101 (109)
231 2cq4_A RNA binding motif prote 99.6 1.9E-15 6.4E-20 133.4 8.9 82 295-377 22-103 (114)
232 2m2b_A RNA-binding protein 10; 99.6 7E-16 2.4E-20 139.8 6.2 85 295-380 20-110 (131)
233 2dnq_A RNA-binding protein 4B; 99.6 5E-15 1.7E-19 124.6 11.0 73 1-80 9-81 (90)
234 2cq1_A PTB-like protein L; RRM 99.6 7.7E-15 2.6E-19 125.5 12.2 80 490-569 11-92 (101)
235 1whx_A Hypothetical protein ri 99.6 3.1E-15 1.1E-19 131.1 9.9 82 491-572 7-88 (111)
236 2ytc_A PRE-mRNA-splicing facto 99.6 4.7E-15 1.6E-19 123.4 10.5 77 611-698 8-85 (85)
237 1x4f_A Matrin 3; structural ge 99.6 1.3E-15 4.4E-20 132.1 7.2 80 612-702 22-104 (112)
238 2db1_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 132.3 10.2 81 295-377 14-97 (118)
239 3q2s_C Cleavage and polyadenyl 99.6 1.8E-15 6.1E-20 150.5 9.1 78 1-78 69-149 (229)
240 3lqv_A PRE-mRNA branch site pr 99.6 4.3E-15 1.5E-19 131.3 10.3 76 1-78 9-84 (115)
241 1x4c_A Splicing factor, argini 99.6 4.3E-15 1.5E-19 129.6 10.1 74 1-80 16-94 (108)
242 2jvr_A Nucleolar protein 3; RN 99.6 2E-15 6.9E-20 131.4 7.9 80 613-701 26-106 (111)
243 2cpj_A Non-POU domain-containi 99.6 3.7E-15 1.3E-19 127.9 9.4 75 1-80 16-90 (99)
244 1wex_A Hypothetical protein (r 99.6 7.8E-15 2.7E-19 126.3 11.5 80 491-570 12-93 (104)
245 2dis_A Unnamed protein product 99.6 4.2E-15 1.4E-19 130.1 9.9 85 296-380 6-94 (109)
246 2kt5_A RNA and export factor-b 99.6 7.7E-15 2.6E-19 131.6 11.9 85 295-380 32-116 (124)
247 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.9E-20 135.6 6.3 77 1-78 24-104 (123)
248 2e5j_A Methenyltetrahydrofolat 99.6 3.7E-15 1.3E-19 127.3 9.2 75 1-79 20-94 (97)
249 2a3j_A U1 small nuclear ribonu 99.6 4.1E-15 1.4E-19 132.9 9.7 82 295-379 26-111 (127)
250 1x5o_A RNA binding motif, sing 99.6 1E-14 3.4E-19 128.7 12.1 83 295-378 22-112 (114)
251 2ytc_A PRE-mRNA-splicing facto 99.6 3.7E-15 1.3E-19 124.0 8.8 72 1-77 13-85 (85)
252 1h2v_Z 20 kDa nuclear CAP bind 99.6 1E-14 3.4E-19 136.6 12.7 86 295-380 36-121 (156)
253 2cpj_A Non-POU domain-containi 99.6 5.1E-15 1.7E-19 127.0 9.9 81 611-702 11-91 (99)
254 1wg5_A Heterogeneous nuclear r 99.6 6.4E-15 2.2E-19 127.6 10.5 84 611-701 11-95 (104)
255 1x4a_A Splicing factor, argini 99.6 1E-14 3.5E-19 127.5 11.9 83 295-380 19-101 (109)
256 1whx_A Hypothetical protein ri 99.6 3.9E-15 1.3E-19 130.5 9.1 73 1-78 11-83 (111)
257 1why_A Hypothetical protein ri 99.6 7.9E-15 2.7E-19 125.3 10.8 80 611-701 13-94 (97)
258 2e5j_A Methenyltetrahydrofolat 99.6 5.8E-15 2E-19 126.1 10.0 80 612-701 16-95 (97)
259 1wez_A HnRNP H', FTP-3, hetero 99.6 5.4E-15 1.8E-19 127.3 9.8 83 295-380 12-94 (102)
260 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8E-15 2.7E-19 134.6 11.6 81 295-375 60-140 (140)
261 2ki2_A SS-DNA binding protein 99.6 8.1E-16 2.8E-20 129.6 4.4 80 299-379 2-81 (90)
262 1x4f_A Matrin 3; structural ge 99.6 3.8E-15 1.3E-19 129.1 8.8 79 490-568 21-102 (112)
263 2dnq_A RNA-binding protein 4B; 99.6 9.7E-15 3.3E-19 122.9 11.1 78 612-702 5-82 (90)
264 2j8a_A Histone-lysine N-methyl 99.6 2.3E-15 8E-20 130.5 7.3 78 1-78 3-95 (136)
265 1wel_A RNA-binding protein 12; 99.6 1.1E-15 3.9E-20 137.0 5.6 77 1-78 26-103 (124)
266 2fc9_A NCL protein; structure 99.6 8.4E-15 2.9E-19 126.2 10.7 83 611-702 11-93 (101)
267 2nlw_A Eukaryotic translation 99.6 5.6E-15 1.9E-19 128.2 9.6 83 613-702 13-102 (105)
268 2xnq_A Nuclear polyadenylated 99.6 8.5E-15 2.9E-19 125.0 10.6 72 1-79 23-95 (97)
269 2cpy_A RNA-binding protein 12; 99.6 3.6E-15 1.2E-19 131.5 8.4 87 611-704 11-98 (114)
270 1fj7_A Nucleolin RBD1, protein 99.6 5.9E-16 2E-20 133.5 3.2 77 1-79 18-95 (101)
271 2la4_A Nuclear and cytoplasmic 99.6 2.8E-15 9.7E-20 129.2 7.5 73 1-78 28-100 (101)
272 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8.4E-15 2.9E-19 134.4 11.0 82 611-697 59-140 (140)
273 2hgl_A HNRPF protein, heteroge 99.6 4.2E-15 1.4E-19 134.4 8.7 81 295-377 41-124 (136)
274 2hgm_A HNRPF protein, heteroge 99.6 2.7E-15 9.3E-20 133.4 7.3 76 1-78 43-120 (126)
275 2xs2_A Deleted in azoospermia- 99.6 2.9E-15 9.7E-20 129.4 7.3 78 1-80 10-87 (102)
276 1nu4_A U1A RNA binding domain; 99.6 6.7E-15 2.3E-19 125.8 9.4 84 612-703 5-92 (97)
277 2kvi_A Nuclear polyadenylated 99.6 6.9E-15 2.4E-19 125.4 9.3 74 1-81 11-85 (96)
278 2la4_A Nuclear and cytoplasmic 99.6 3.9E-15 1.3E-19 128.3 7.8 77 613-700 25-101 (101)
279 2dnn_A RNA-binding protein 12; 99.6 5.6E-15 1.9E-19 128.3 8.7 79 296-377 14-92 (109)
280 2fc8_A NCL protein; structure 99.6 9.3E-15 3.2E-19 126.1 9.9 78 1-81 16-94 (102)
281 1x4c_A Splicing factor, argini 99.6 1.7E-14 5.8E-19 125.9 11.4 79 612-702 12-95 (108)
282 2hgn_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 138.0 4.6 77 1-79 47-123 (139)
283 2dnp_A RNA-binding protein 14; 99.6 1.1E-14 3.8E-19 122.5 9.9 73 1-80 10-82 (90)
284 2dgu_A Heterogeneous nuclear r 99.6 1.3E-14 4.4E-19 125.5 10.5 74 1-81 12-85 (103)
285 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-14 4.2E-19 127.0 10.4 80 612-702 22-101 (109)
286 2jvo_A Nucleolar protein 3; nu 99.6 8.5E-15 2.9E-19 127.6 9.3 72 1-79 32-103 (108)
287 1fj7_A Nucleolin RBD1, protein 99.6 1.5E-15 5E-20 131.0 4.3 84 295-380 14-97 (101)
288 1wel_A RNA-binding protein 12; 99.6 5E-15 1.7E-19 132.8 7.9 82 295-377 22-103 (124)
289 2krb_A Eukaryotic translation 99.6 3.7E-15 1.3E-19 122.7 6.4 72 299-372 2-80 (81)
290 1iqt_A AUF1, heterogeneous nuc 99.6 2.3E-15 7.9E-20 122.0 5.1 75 300-375 1-75 (75)
291 2xnq_A Nuclear polyadenylated 99.6 2E-14 6.9E-19 122.6 11.2 77 611-700 18-95 (97)
292 2dgt_A RNA-binding protein 30; 99.5 1.6E-14 5.6E-19 122.0 10.3 73 1-80 11-83 (92)
293 2cpd_A Apobec-1 stimulating pr 99.5 2.9E-14 9.9E-19 122.3 11.8 79 611-702 11-91 (99)
294 2cpd_A Apobec-1 stimulating pr 99.5 2.2E-14 7.5E-19 123.0 11.1 74 1-81 16-91 (99)
295 2diu_A KIAA0430 protein; struc 99.5 1.6E-14 5.6E-19 118.3 9.6 75 613-702 6-86 (96)
296 2dgu_A Heterogeneous nuclear r 99.5 2.3E-14 7.7E-19 123.9 11.0 80 611-703 7-86 (103)
297 1fjc_A Nucleolin RBD2, protein 99.5 5E-15 1.7E-19 126.3 6.7 76 1-80 17-92 (96)
298 2dgt_A RNA-binding protein 30; 99.5 2.2E-14 7.5E-19 121.2 10.7 79 611-702 6-84 (92)
299 2fc8_A NCL protein; structure 99.5 2.3E-14 8E-19 123.6 11.0 83 295-380 12-94 (102)
300 1nu4_A U1A RNA binding domain; 99.5 6.2E-15 2.1E-19 126.0 7.3 82 295-379 5-90 (97)
301 2f3j_A RNA and export factor b 99.5 1E-14 3.5E-19 138.9 9.5 79 1-79 89-167 (177)
302 3pgw_S U1-70K; protein-RNA com 99.5 3E-15 1E-19 163.0 6.6 84 297-380 101-184 (437)
303 2lcw_A RNA-binding protein FUS 99.3 5.1E-16 1.7E-20 137.5 0.0 80 1-80 8-96 (116)
304 2cpx_A Hypothetical protein FL 99.5 7.1E-15 2.4E-19 129.9 7.2 86 295-380 22-107 (115)
305 2lmi_A GRSF-1, G-rich sequence 99.5 4.1E-15 1.4E-19 129.5 5.4 81 295-377 8-91 (107)
306 2jvo_A Nucleolar protein 3; nu 99.5 1.8E-14 6E-19 125.5 9.3 79 611-702 27-105 (108)
307 3zzy_A Polypyrimidine tract-bi 99.5 3.2E-14 1.1E-18 126.3 11.0 75 617-701 30-107 (130)
308 2cqh_A IGF-II mRNA-binding pro 99.5 1.5E-14 5E-19 122.6 8.5 74 1-80 9-84 (93)
309 3egn_A RNA-binding protein 40; 99.5 4.2E-15 1.4E-19 136.9 5.3 86 610-703 40-133 (143)
310 2e44_A Insulin-like growth fac 99.5 3.8E-14 1.3E-18 120.8 10.9 81 612-701 12-93 (96)
311 3zzy_A Polypyrimidine tract-bi 99.5 3.2E-14 1.1E-18 126.3 10.7 74 2-79 30-106 (130)
312 2cpx_A Hypothetical protein FL 99.5 2.2E-14 7.5E-19 126.8 9.6 83 611-702 21-107 (115)
313 1sjr_A Polypyrimidine tract-bi 99.5 3E-14 1E-18 131.3 10.5 76 2-80 48-125 (164)
314 2dnp_A RNA-binding protein 14; 99.5 4.7E-14 1.6E-18 118.6 10.8 79 611-702 5-83 (90)
315 2kvi_A Nuclear polyadenylated 99.5 1.8E-14 6.1E-19 122.8 8.3 79 612-703 7-86 (96)
316 2dha_A FLJ20171 protein; RRM d 99.5 1.2E-14 4.2E-19 128.9 7.5 80 296-377 21-104 (123)
317 2j8a_A Histone-lysine N-methyl 99.5 2E-14 6.8E-19 124.6 8.5 79 299-377 3-95 (136)
318 1wf1_A RNA-binding protein RAL 99.5 2.1E-14 7E-19 125.8 8.7 72 1-79 28-100 (110)
319 1sjr_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 130.7 10.6 77 616-701 47-125 (164)
320 2cq2_A Hypothetical protein LO 99.5 3.2E-14 1.1E-18 123.3 9.6 82 491-572 22-110 (114)
321 3d2w_A TAR DNA-binding protein 99.5 3E-14 1E-18 119.4 9.0 71 1-79 12-84 (89)
322 3egn_A RNA-binding protein 40; 99.5 9.8E-15 3.3E-19 134.5 6.6 79 1-79 46-130 (143)
323 1x5p_A Negative elongation fac 99.5 8.1E-14 2.8E-18 119.0 11.8 79 611-702 11-89 (97)
324 2xs2_A Deleted in azoospermia- 99.5 1.3E-14 4.4E-19 125.2 6.8 82 295-379 6-87 (102)
325 1fjc_A Nucleolin RBD2, protein 99.5 2.3E-14 8E-19 122.1 8.2 81 295-380 13-93 (96)
326 2cq2_A Hypothetical protein LO 99.5 2.4E-14 8.3E-19 124.1 8.4 80 611-701 21-107 (114)
327 2diu_A KIAA0430 protein; struc 99.5 3.4E-14 1.2E-18 116.4 8.7 71 2-81 11-86 (96)
328 1wg1_A KIAA1579 protein, homol 99.5 2.9E-14 1E-18 119.3 8.5 76 614-701 4-79 (88)
329 2lcw_A RNA-binding protein FUS 99.3 1.2E-15 4.2E-20 135.1 0.0 87 612-703 4-98 (116)
330 2hgm_A HNRPF protein, heteroge 99.5 1.3E-14 4.5E-19 129.0 6.7 83 611-701 38-122 (126)
331 2e5i_A Heterogeneous nuclear r 99.5 7.6E-14 2.6E-18 123.5 11.2 74 2-80 27-103 (124)
332 2cqh_A IGF-II mRNA-binding pro 99.5 2.2E-14 7.4E-19 121.5 7.4 80 612-702 5-85 (93)
333 2e5g_A U6 snRNA-specific termi 99.5 5.7E-14 2E-18 119.1 9.7 74 1-80 9-83 (94)
334 3beg_B Splicing factor, argini 99.5 3.3E-14 1.1E-18 125.4 8.5 73 1-79 17-94 (115)
335 3d2w_A TAR DNA-binding protein 99.5 5.4E-14 1.8E-18 117.7 9.3 77 612-702 8-86 (89)
336 2pe8_A Splicing factor 45; RRM 99.5 1.5E-13 5.2E-18 118.5 11.4 83 613-699 6-93 (105)
337 1wf1_A RNA-binding protein RAL 99.5 7.9E-14 2.7E-18 122.1 9.5 76 613-701 25-101 (110)
338 2f3j_A RNA and export factor b 99.5 6.1E-14 2.1E-18 133.5 9.2 83 295-378 85-167 (177)
339 1wg1_A KIAA1579 protein, homol 99.5 8.1E-14 2.8E-18 116.6 8.9 79 492-571 3-81 (88)
340 2e44_A Insulin-like growth fac 99.5 7.8E-14 2.7E-18 118.8 8.8 80 296-379 13-93 (96)
341 2e5i_A Heterogeneous nuclear r 99.5 2.6E-13 8.8E-18 120.0 12.3 73 618-701 28-103 (124)
342 2hgn_A Heterogeneous nuclear r 99.5 1.5E-14 5.2E-19 131.2 4.4 83 295-380 43-125 (139)
343 2hzc_A Splicing factor U2AF 65 99.5 9.1E-14 3.1E-18 116.0 7.9 68 1-74 7-85 (87)
344 1x5p_A Negative elongation fac 99.5 4.7E-13 1.6E-17 114.2 12.5 78 490-569 11-88 (97)
345 2e5g_A U6 snRNA-specific termi 99.5 1.8E-13 6.1E-18 116.0 9.2 79 613-702 6-84 (94)
346 2voo_A Lupus LA protein; RNA-b 99.4 2.2E-13 7.7E-18 131.6 10.8 77 1-78 110-186 (193)
347 1wf0_A TDP-43, TAR DNA-binding 99.4 5.8E-14 2E-18 117.5 5.5 75 1-81 6-80 (88)
348 3beg_B Splicing factor, argini 99.4 1.8E-13 6.1E-18 120.7 8.5 76 614-701 15-95 (115)
349 2dnl_A Cytoplasmic polyadenyla 99.4 1.4E-13 4.8E-18 121.2 7.7 74 1-77 9-86 (114)
350 2dnl_A Cytoplasmic polyadenyla 99.4 2.6E-13 8.7E-18 119.6 8.9 77 296-375 6-85 (114)
351 3v4m_A Splicing factor U2AF 65 99.4 3.3E-13 1.1E-17 116.4 9.1 85 613-700 3-97 (105)
352 2bz2_A Negative elongation fac 99.4 3.4E-13 1.2E-17 119.8 9.3 72 1-79 40-111 (121)
353 2hzc_A Splicing factor U2AF 65 99.4 4.2E-13 1.4E-17 112.0 9.0 73 491-564 3-86 (87)
354 2pe8_A Splicing factor 45; RRM 99.4 8.5E-13 2.9E-17 113.7 11.2 83 295-377 5-93 (105)
355 2bz2_A Negative elongation fac 99.4 4.5E-13 1.5E-17 119.0 8.7 78 612-702 36-113 (121)
356 1wf0_A TDP-43, TAR DNA-binding 99.4 1.4E-13 4.9E-18 115.1 5.1 77 614-702 4-80 (88)
357 2dit_A HIV TAT specific factor 99.4 1.1E-12 3.6E-17 115.1 10.0 83 611-702 11-104 (112)
358 3u1l_A PRE-mRNA-splicing facto 99.4 5.9E-13 2E-17 131.4 8.8 75 1-80 135-230 (240)
359 1jmt_A Splicing factor U2AF 35 99.4 1.9E-13 6.5E-18 117.8 4.2 72 5-76 20-103 (104)
360 2voo_A Lupus LA protein; RNA-b 99.4 1.9E-12 6.6E-17 125.1 11.6 80 296-377 107-186 (193)
361 3u1l_A PRE-mRNA-splicing facto 99.4 1.1E-12 3.6E-17 129.5 8.9 80 612-702 131-231 (240)
362 3ue2_A Poly(U)-binding-splicin 99.3 3.4E-12 1.2E-16 112.1 9.7 83 614-699 19-108 (118)
363 2dit_A HIV TAT specific factor 99.3 1.8E-11 6E-16 107.3 10.2 82 295-380 12-104 (112)
364 1jmt_A Splicing factor U2AF 35 99.3 2.2E-12 7.7E-17 111.0 4.1 73 620-698 20-104 (104)
365 3v4m_A Splicing factor U2AF 65 99.2 1.3E-11 4.4E-16 106.4 8.4 80 297-376 4-95 (105)
366 3ue2_A Poly(U)-binding-splicin 99.2 3.6E-11 1.2E-15 105.6 9.7 80 297-376 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.2 5.2E-11 1.8E-15 101.2 9.9 64 10-79 27-90 (100)
368 3s6e_A RNA-binding protein 39; 99.2 3.1E-11 1E-15 105.3 8.5 80 612-700 4-93 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.1E-10 3.8E-15 99.1 10.7 76 615-702 10-92 (100)
370 3s6e_A RNA-binding protein 39; 99.1 1.4E-10 4.6E-15 101.2 9.9 79 491-569 4-94 (114)
371 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4.1E-15 121.2 10.1 77 611-698 14-97 (345)
372 3tht_A Alkylated DNA repair pr 99.1 2E-10 6.9E-15 119.5 10.2 78 490-567 14-98 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 1.5E-09 5E-14 88.2 8.8 75 612-700 4-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.9 4.2E-09 1.4E-13 91.6 8.0 82 611-703 14-99 (121)
375 1owx_A Lupus LA protein, SS-B, 98.8 2.1E-08 7.2E-13 87.2 11.0 77 490-566 14-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 2E-08 6.7E-13 81.6 9.2 76 491-569 4-87 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.7 1.9E-08 6.5E-13 82.0 5.7 75 611-699 11-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.7 1.1E-07 3.8E-12 93.9 11.6 85 612-699 121-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.6 1.1E-07 3.7E-12 94.1 8.6 67 11-77 140-211 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.6 2.5E-07 8.7E-12 76.6 8.9 75 492-566 19-98 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 7.9E-08 2.7E-12 78.4 5.2 73 295-376 12-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.2 2.9E-06 9.8E-11 70.4 7.7 73 614-697 20-97 (117)
383 1wey_A Calcipressin 1; structu 97.7 0.00011 3.6E-09 61.1 8.1 73 494-566 5-82 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.6 0.00026 8.9E-09 58.4 9.3 90 614-728 7-99 (104)
385 1wey_A Calcipressin 1; structu 97.5 0.00011 3.9E-09 60.9 5.7 75 616-701 6-85 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.5 0.001 3.4E-08 55.0 10.8 74 491-567 5-83 (104)
387 1uw4_A UPF3X; nonsense mediate 97.0 0.0028 9.4E-08 51.8 8.4 67 1-67 2-71 (91)
388 1wwh_A Nucleoporin 35, nucleop 96.9 0.0026 8.8E-08 54.4 7.9 74 491-566 21-95 (119)
389 1uw4_A UPF3X; nonsense mediate 96.9 0.0044 1.5E-07 50.6 8.5 69 616-687 2-70 (91)
390 1whv_A Poly(A)-specific ribonu 96.7 0.0037 1.3E-07 50.9 7.1 53 299-360 17-69 (100)
391 1whv_A Poly(A)-specific ribonu 96.4 0.0065 2.2E-07 49.5 6.6 53 3-62 18-70 (100)
392 3p3d_A Nucleoporin 53; structu 96.1 0.0086 2.9E-07 51.9 6.1 73 494-568 7-99 (132)
393 1wwh_A Nucleoporin 35, nucleop 96.1 0.026 8.9E-07 48.2 8.9 73 296-376 22-95 (119)
394 3ctr_A Poly(A)-specific ribonu 95.8 0.012 4E-07 48.1 5.4 53 300-361 8-60 (101)
395 3ctr_A Poly(A)-specific ribonu 95.4 0.021 7.2E-07 46.7 5.4 53 3-62 8-60 (101)
396 2l08_A Regulator of nonsense t 95.3 0.028 9.7E-07 46.1 5.9 80 616-698 10-94 (97)
397 3p3d_A Nucleoporin 53; structu 95.3 0.023 7.7E-07 49.2 5.6 75 300-376 9-97 (132)
398 2l08_A Regulator of nonsense t 94.8 0.025 8.6E-07 46.4 4.2 66 2-67 11-79 (97)
399 3pq1_A Poly(A) RNA polymerase; 94.4 0.021 7.2E-07 61.3 3.7 55 494-549 53-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 91.3 0.11 3.7E-06 55.9 3.5 54 298-357 53-106 (464)
401 3d45_A Poly(A)-specific ribonu 71.8 7.4 0.00025 42.5 7.7 53 3-63 443-495 (507)
402 3d45_A Poly(A)-specific ribonu 71.7 7.5 0.00025 42.4 7.7 55 298-361 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 44.5 46 0.0016 25.3 5.9 68 2-77 2-75 (76)
404 2g0c_A ATP-dependent RNA helic 41.3 32 0.0011 26.3 4.5 63 625-698 11-75 (76)
405 4e8u_A Putative uncharacterize 34.2 57 0.0019 29.5 5.4 53 616-676 13-76 (172)
406 4e8u_A Putative uncharacterize 31.1 95 0.0032 28.1 6.3 55 300-357 14-80 (172)
407 4eyt_A Telomerase associated p 20.3 3.1E+02 0.011 21.4 9.8 58 295-360 9-66 (129)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-40 Score=347.60 Aligned_cols=248 Identities=17% Similarity=0.249 Sum_probs=214.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|+|+.++ .+ ++|||||.|.+.++|..|+ .++|..+.|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL-KK-NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999987 34 5899999999999999999 6999999999999998
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
+.
T Consensus 115 ~~------------------------------------------------------------------------------ 116 (292)
T 2ghp_A 115 LT------------------------------------------------------------------------------ 116 (292)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 63
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccC-ceeEEEccC-----
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLDKVILPS----- 528 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G-~i~~v~l~~----- 528 (731)
.++|||+|||..+++++|+++|+.|| .|..+.+..
T Consensus 117 ---------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~ 157 (292)
T 2ghp_A 117 ---------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNT 157 (292)
T ss_dssp ---------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC------
T ss_pred ---------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCC
Confidence 24799999999999999999999999 999999874
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCC
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADI 608 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (731)
++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+.........
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------------------------------- 203 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---------------------------------- 203 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------------------------------------
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----------------------------------
Confidence 6799999999999999999999999999999999999643211000
Q ss_pred CCCCCCCCeEEEeCCCCC-CCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 609 DPDRVESRSLFVKNLNFK-TCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 609 ~~~~~~~~~L~V~NLp~~-~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
.....+.++|||+|||.. +|+++|+++|+.||. |..|+|+.+.. +.+.++|||||.|.+.++|.+|+ .|||..|
T Consensus 204 ~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~---v~~v~i~~~~~-~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 204 DSATLEGREIMIRNLSTELLDENLLRESFEGFGS---IEKINIPAGQK-EHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp ---CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC---EEEEECCSCCC----CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred cccCCCCceEEEECCCcccCCHHHHHHHHhccCC---eeEEEEEecCC-cCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 012346678999999999 999999999999999 99999998763 11348999999999999999999 9999999
Q ss_pred CCcEEEEEeccCCc
Q 037049 688 DGHALILQLCHAKK 701 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~ 701 (731)
.|++|.|.||+++.
T Consensus 279 ~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 279 GNREISVSLADKKP 292 (292)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCcEEEEEEecCCC
Confidence 99999999999873
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8.9e-40 Score=340.51 Aligned_cols=242 Identities=23% Similarity=0.345 Sum_probs=216.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+++|||+|||+++++++|+++|+.|| |..+.+ +.++|||||.|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 44567999999999999999999999999 989887 44688999999999999999999999999999999998
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
+..
T Consensus 92 ~~~----------------------------------------------------------------------------- 94 (284)
T 3smz_A 92 QPT----------------------------------------------------------------------------- 94 (284)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 541
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------ 528 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------ 528 (731)
.++|||+|||..+++++|+++|+.||.|..+.+..
T Consensus 95 ---------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 95 ---------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp ---------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred ---------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 24799999999999999999999999999997763
Q ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCC
Q 037049 529 TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADI 608 (731)
Q Consensus 529 ~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (731)
++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+......
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------------------------------------- 178 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------------------------------------- 178 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------------------------------------
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------------------------------------
Confidence 4679999999999999999999999999999999999643210
Q ss_pred CCCCCCCCeEEEeCCCCCC-CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 609 DPDRVESRSLFVKNLNFKT-CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 609 ~~~~~~~~~L~V~NLp~~~-tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
....+.++|||+|||..+ |+++|+++|+.||. |.+++|+.+. +| .++|||||.|.+.++|.+|+..|||..|
T Consensus 179 -~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~---i~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 179 -PALLHSRCLCVDRLPPGFNDVDALCRALSAVHS---PTFCQLACGQ-DG--QLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp -TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC---CSEEEEEECS-SC--CEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred -cccCCccEEEEecCCcccCCHHHHHHHhhCCCC---eEEEEEEECC-CC--CcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 022456789999999995 99999999999999 9999999976 33 4899999999999999999999999999
Q ss_pred CCcEEEEEeccCCchh
Q 037049 688 DGHALILQLCHAKKDE 703 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~~~ 703 (731)
+|++|.|.||+++...
T Consensus 252 ~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TTEECEEEECCSSSCH
T ss_pred CCeEEEEEEecCCCcc
Confidence 9999999999998764
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.6e-39 Score=338.58 Aligned_cols=236 Identities=22% Similarity=0.268 Sum_probs=213.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~-- 94 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT-- 94 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC--
Confidence 5799999999999999999999999 999988 45689999999999999999999999999999999985421
Q ss_pred CCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhc
Q 037049 81 DPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK 160 (731)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (731)
T Consensus 95 -------------------------------------------------------------------------------- 94 (284)
T 3smz_A 95 -------------------------------------------------------------------------------- 94 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCc
Q 037049 161 VSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 240 (731)
T Consensus 95 -------------------------------------------------------------------------------- 94 (284)
T 3smz_A 95 -------------------------------------------------------------------------------- 94 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 037049 241 EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320 (731)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 320 (731)
.++|||+|||+.+++++|+++|+
T Consensus 95 ---------------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 95 ---------------------------------------------------------DALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp ---------------------------------------------------------SCEEEEESCCTTCCHHHHHHHHG
T ss_pred ---------------------------------------------------------CCEEEEcCCCCcCCHHHHHHHHH
Confidence 12799999999999999999999
Q ss_pred cCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhHH
Q 037049 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQR 400 (731)
Q Consensus 321 ~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~ 400 (731)
.||.|..+.++.++.+|.++|||||.|.+.++|..|+..|+|..+.|+.|.|.++.+....
T Consensus 118 ~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------------------- 178 (284)
T 3smz_A 118 PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------------------- 178 (284)
T ss_dssp GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------------------
T ss_pred hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------------------
Confidence 9999999999999889999999999999999999999999999999999999998743210
Q ss_pred HHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCccccc
Q 037049 401 REEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLE 480 (731)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 480 (731)
T Consensus 179 -------------------------------------------------------------------------------- 178 (284)
T 3smz_A 179 -------------------------------------------------------------------------------- 178 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCcCCCcEEEEeCCCCCC-CHHHHHHHhcccCceeEEEccC-----CCCEEEEEeCCHHHHHHHHHhcCCCc
Q 037049 481 EFSAGKTDGLKRSNHVFLVKNLPYDS-SEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKR 554 (731)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~V~NLp~~~-te~~L~~~F~~~G~i~~v~l~~-----~kg~afV~F~~~e~A~~Ai~~lng~~ 554 (731)
......++|||+|||..+ ++++|+++|+.||.|..+.|.+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 179 --------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 179 --------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp --------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred --------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 012345789999999995 9999999999999999998875 37899999999999999999999999
Q ss_pred cCCceEEEEeCCCC
Q 037049 555 YKGVPLYLEWAPSD 568 (731)
Q Consensus 555 ~~gr~l~v~~a~~~ 568 (731)
|.|++|.|.|+...
T Consensus 251 ~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 251 LGGSHLRVSFCAPG 264 (284)
T ss_dssp ETTEECEEEECCSS
T ss_pred cCCeEEEEEEecCC
Confidence 99999999999654
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.3e-39 Score=338.84 Aligned_cols=241 Identities=20% Similarity=0.294 Sum_probs=209.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|+.||.|.+|+|++++.+ ++|||||+|.+.++|.+||+ +||..+.|+.|.|.++.
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~--- 116 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT--- 116 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC---
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC---
Confidence 58999999999999999999999999999999998765 47999999999999999996 99999999999988432
Q ss_pred CCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhc
Q 037049 81 DPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK 160 (731)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (731)
T Consensus 117 -------------------------------------------------------------------------------- 116 (292)
T 2ghp_A 117 -------------------------------------------------------------------------------- 116 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCc
Q 037049 161 VSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 240 (731)
T Consensus 117 -------------------------------------------------------------------------------- 116 (292)
T 2ghp_A 117 -------------------------------------------------------------------------------- 116 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 037049 241 EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320 (731)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 320 (731)
.++|||+|||+.+++++|+++|+
T Consensus 117 ---------------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 117 ---------------------------------------------------------ECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp ---------------------------------------------------------SCEEEEECCCTTCCHHHHHHHHH
T ss_pred ---------------------------------------------------------CCEEEEECCCCCCCHHHHHHHHH
Confidence 12899999999999999999999
Q ss_pred cCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCCCchhhcccccccCCchhhH
Q 037049 321 KFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKSSDKQELHNSTSQGTKTLKQ 399 (731)
Q Consensus 321 ~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~ 399 (731)
.|| .|..|.++.++ .|.++|||||.|.+.++|..|+..|+|..+.|+.|.|.++.+.......
T Consensus 140 ~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------- 203 (292)
T 2ghp_A 140 DINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------- 203 (292)
T ss_dssp HTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------------------
T ss_pred HhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc---------------
Confidence 999 99999999988 5889999999999999999999999999999999999999865321000
Q ss_pred HHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccc
Q 037049 400 RREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSL 479 (731)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 479 (731)
T Consensus 204 -------------------------------------------------------------------------------- 203 (292)
T 2ghp_A 204 -------------------------------------------------------------------------------- 203 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCcCCCcEEEEeCCCCC-CCHHHHHHHhcccCceeEEEccC-------CCCEEEEEeCCHHHHHHHHHhcC
Q 037049 480 EEFSAGKTDGLKRSNHVFLVKNLPYD-SSEGELAKMFGKFGSLDKVILPS-------TKTLALVVFLEPVEAAAAFKGLA 551 (731)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~V~NLp~~-~te~~L~~~F~~~G~i~~v~l~~-------~kg~afV~F~~~e~A~~Ai~~ln 551 (731)
.......++|||+|||.. +++++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|+ .||
T Consensus 204 --------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 204 --------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp -----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred --------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 002345678999999999 99999999999999999999864 3689999999999999999 999
Q ss_pred CCccCCceEEEEeCCCC
Q 037049 552 YKRYKGVPLYLEWAPSD 568 (731)
Q Consensus 552 g~~~~gr~l~v~~a~~~ 568 (731)
|..|.|+.|.|.||..+
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999653
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-30 Score=243.69 Aligned_cols=164 Identities=25% Similarity=0.415 Sum_probs=150.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCCC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVGD 81 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~~ 81 (731)
+|||+|||+++|+++|+++|++||.|.+|+|++++.|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 79999999999999999999999999999999998899999999999999999999999999999999999998764210
Q ss_pred CCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhcc
Q 037049 82 PNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAKV 161 (731)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (731)
.
T Consensus 82 ~------------------------------------------------------------------------------- 82 (166)
T 3md3_A 82 S------------------------------------------------------------------------------- 82 (166)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCcc
Q 037049 162 SENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGEE 241 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e 241 (731)
T Consensus 83 -------------------------------------------------------------------------------- 82 (166)
T 3md3_A 83 -------------------------------------------------------------------------------- 82 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHhc
Q 037049 242 EEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFSK 321 (731)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 321 (731)
. ....++|||+|||..+++++|+++|+.
T Consensus 83 ---------------------------------~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~ 110 (166)
T 3md3_A 83 ---------------------------------S-------------------SDDTFNLFVGDLNVNVDDETLRNAFKD 110 (166)
T ss_dssp ---------------------------------C-------------------CTTCEEEEEESCCTTCCHHHHHHHHTT
T ss_pred ---------------------------------C-------------------CCCCceEEECCCCCCCCHHHHHHHHhc
Confidence 0 112348999999999999999999999
Q ss_pred CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 322 FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 322 ~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
||.|..+.++.++.+|.++|||||.|.+.++|.+|+..|||..+.|+.|.|.||.
T Consensus 111 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 111 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999998899999999999999999999999999999999999999986
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=3.3e-30 Score=255.91 Aligned_cols=165 Identities=26% Similarity=0.412 Sum_probs=148.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+||..+|+..+.|+.|++.++.+.
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 5899999999999999999999999999999999987 999999999999999999999999999999999999876531
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
...
T Consensus 96 ~~~----------------------------------------------------------------------------- 98 (213)
T 4f02_A 96 PSL----------------------------------------------------------------------------- 98 (213)
T ss_dssp THH-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
.
T Consensus 99 -------------------------------------------------------~------------------------ 99 (213)
T 4f02_A 99 -------------------------------------------------------R------------------------ 99 (213)
T ss_dssp -------------------------------------------------------H------------------------
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
....++|||+|||+.+++++|+++|
T Consensus 100 -------------------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 100 -------------------------------------------------------KSGVGNIFIKNLDKSIDNKALYDTF 124 (213)
T ss_dssp -------------------------------------------------------HHCTTEEEEESCCTTCCHHHHHHHH
T ss_pred -------------------------------------------------------ccccccceECCcccccHHHHHHHHH
Confidence 0112379999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
+.||.|..|+|++|. +.++|||||.|.+.++|.+|++.|||..|.|+.|.|.++.++
T Consensus 125 ~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 125 SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp GGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred hhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999999986 448999999999999999999999999999999999999853
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.3e-29 Score=241.69 Aligned_cols=162 Identities=35% Similarity=0.552 Sum_probs=149.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|+.||.|.+|++++++. |+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 5899999999999999999999999999999999976 999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
..
T Consensus 84 ~~------------------------------------------------------------------------------ 85 (168)
T 1b7f_A 84 GE------------------------------------------------------------------------------ 85 (168)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 86 -------------------------------------------------------------------------------- 85 (168)
T 1b7f_A 86 -------------------------------------------------------------------------------- 85 (168)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
....++|||+|||..+++++|+++|
T Consensus 86 -------------------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 86 -------------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp -------------------------------------------------------TTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred -------------------------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 0112489999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC--eEEEEEec
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG--RLLHVMPA 375 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g--~~l~V~~a 375 (731)
+.||.|..+.++++..+|.++|||||+|.+.++|.+|+..|||..+.| ++|.|.||
T Consensus 111 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 111 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999998899999999999999999999999999999987 99999986
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.4e-29 Score=239.58 Aligned_cols=162 Identities=31% Similarity=0.491 Sum_probs=148.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|+.||.|.+|++++++. |+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 5899999999999999999999999999999999985 999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
..
T Consensus 83 ~~------------------------------------------------------------------------------ 84 (167)
T 1fxl_A 83 SA------------------------------------------------------------------------------ 84 (167)
T ss_dssp CG------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 85 -------------------------------------------------------------------------------- 84 (167)
T 1fxl_A 85 -------------------------------------------------------------------------------- 84 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
....++|||+|||..+++++|+++|
T Consensus 85 -------------------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 85 -------------------------------------------------------SIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp -------------------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred -------------------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHH
Confidence 0112379999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeE--EEEEec
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRL--LHVMPA 375 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~--l~V~~a 375 (731)
+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..+.|+. |.|.||
T Consensus 110 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 110 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999889999999999999999999999999999999975 888875
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3.9e-29 Score=244.94 Aligned_cols=171 Identities=23% Similarity=0.391 Sum_probs=147.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|+.||.|.+|+|++++. |+++|||||+|.+.++|.+||. +++..+.|+.|.|.++.+.
T Consensus 14 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEECCC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecccCc
Confidence 4799999999999999999999999999999999987 9999999999999999999998 5999999999999987642
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
.....
T Consensus 93 ~~~~~--------------------------------------------------------------------------- 97 (196)
T 1l3k_A 93 EDSQR--------------------------------------------------------------------------- 97 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 10000
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 98 -------------------------------------------------------------------------------- 97 (196)
T 1l3k_A 98 -------------------------------------------------------------------------------- 97 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
. ......++|||+|||+.+++++|+++|
T Consensus 98 -----------------------------------~-----------------~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 98 -----------------------------------P-----------------GAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp ---------------------------------------------------------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred -----------------------------------c-----------------ccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 0 001223589999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~ 380 (731)
+.||.|..|.|+.++.+|.++|||||.|.+.++|.+|+.. ++..|.|+.|.|.++.++..
T Consensus 126 ~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 9999999999999988999999999999999999999955 89999999999999997654
No 10
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.9e-29 Score=250.34 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=147.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+|+++|||||.|.+.++|.+|+..+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
..... .
T Consensus 93 ~~~~~-----------------~--------------------------------------------------------- 98 (213)
T 4f02_A 93 QRDPS-----------------L--------------------------------------------------------- 98 (213)
T ss_dssp CCCTH-----------------H---------------------------------------------------------
T ss_pred ccccc-----------------c---------------------------------------------------------
Confidence 74311 0
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC----CCC
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS----TKT 531 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~----~kg 531 (731)
.....++|||+|||..+++++|+++|+.||.|..+.|+. ++|
T Consensus 99 ----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g 144 (213)
T 4f02_A 99 ----------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 144 (213)
T ss_dssp ----------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEE
T ss_pred ----------------------------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCce
Confidence 011235799999999999999999999999999998874 578
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCC
Q 037049 532 LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 532 ~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~ 567 (731)
||||+|.+.++|.+|+..|||..|.|+.|.|.||..
T Consensus 145 ~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 145 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 999999999999999999999999999999999964
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4.6e-29 Score=248.44 Aligned_cols=178 Identities=21% Similarity=0.351 Sum_probs=151.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|+.||.|.+|+|++++. |+++|||||+|.+.++|.+||+.|||..+.|+.|+|.++...
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 5899999999999999999999999999999999985 999999999999999999999999999999999999866531
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
... .. . .
T Consensus 109 ~~~---------~~---------------------------------------------~--------------~----- 115 (216)
T 2qfj_A 109 GQA---------QP---------------------------------------------I--------------I----- 115 (216)
T ss_dssp GGG---------HH---------------------------------------------H--------------H-----
T ss_pred ccc---------ch---------------------------------------------h--------------h-----
Confidence 000 00 0 0
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
...
T Consensus 116 ------------------------------------------------------~~~----------------------- 118 (216)
T 2qfj_A 116 ------------------------------------------------------DQL----------------------- 118 (216)
T ss_dssp ------------------------------------------------------HHH-----------------------
T ss_pred ------------------------------------------------------hhh-----------------------
Confidence 000
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
.......++|||+|||..+++++|+++|
T Consensus 119 ----------------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 119 ----------------------------------------------------AEEARAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp ----------------------------------------------------HHHHTTSCEEEEECCCTTCCHHHHHHHH
T ss_pred ----------------------------------------------------hcccCCCcEEEEeCCCCcCCHHHHHHHH
Confidence 0001233589999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHKKS 380 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~~~ 380 (731)
+.||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 147 ~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 147 EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999988999999999999999999999999999999999999999987644
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=234.29 Aligned_cols=161 Identities=27% Similarity=0.389 Sum_probs=145.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC-----CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCc
Q 037049 495 HVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS-----TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 495 ~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~-----~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 569 (731)
++|||+|||.++++++|+++|++||.|..+.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 4799999999999999999999999999998863 46899999999999999999999999999999999996432
Q ss_pred cccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEE
Q 037049 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649 (731)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vk 649 (731)
. ....+.++|||+|||..+|+++|+++|+.||. |..++
T Consensus 81 ~---------------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---i~~~~ 118 (166)
T 3md3_A 81 Q---------------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS---YLSGH 118 (166)
T ss_dssp C---------------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT---EEEEE
T ss_pred C---------------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCC---eeEEE
Confidence 0 02335678999999999999999999999999 99999
Q ss_pred EeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 037049 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHA 699 (731)
Q Consensus 650 i~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~ 699 (731)
++.+..+|. ++|||||+|.+.++|.+|+..|||..|+|++|.|.||++
T Consensus 119 i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 119 VMWDMQTGS--SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEECTTTCC--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999875554 899999999999999999999999999999999999974
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.9e-29 Score=240.50 Aligned_cols=162 Identities=27% Similarity=0.500 Sum_probs=146.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|+.||.|.+|+|++++. |+++|||||+|.+.++|.+||. ++..+.|+.|.|.++.+.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccch
Confidence 4899999999999999999999999999999999976 9999999999999999999998 467889999988766531
Q ss_pred CCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhh
Q 037049 80 GDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKA 159 (731)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (731)
..
T Consensus 82 ~~------------------------------------------------------------------------------ 83 (167)
T 2cjk_A 82 DE------------------------------------------------------------------------------ 83 (167)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 037049 160 KVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDG 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 239 (731)
T Consensus 84 -------------------------------------------------------------------------------- 83 (167)
T 2cjk_A 84 -------------------------------------------------------------------------------- 83 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHH
Q 037049 240 EEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHF 319 (731)
Q Consensus 240 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 319 (731)
....++|||+|||+.+++++|+++|
T Consensus 84 -------------------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 84 -------------------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp -------------------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred -------------------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHH
Confidence 0012389999999999999999999
Q ss_pred hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 320 SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 320 ~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
+.||.|..+.++.++.+|.++|||||.|.+.++|.+|++ +++..+.|+.|.|.++.++
T Consensus 109 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 109 SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999999999999998899999999999999999999996 8999999999999999875
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.4e-28 Score=234.62 Aligned_cols=163 Identities=25% Similarity=0.391 Sum_probs=142.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-C--CcceEEEEEecCHHHHHHHHHHhCCCccC---CceeEEE
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-G--KSRQFAFIGFRTEQEAEEAIKYFNKSYLD---TCRISCE 74 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g--~~~g~afV~f~~~~~a~~ai~~~~g~~~~---g~~i~v~ 74 (731)
++|||+|||+++|+++|+++|++||.|.+|+|++++. | +++|||||+|.+.++|++|++.|+|..+. ++.+.+.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 4799999999999999999999999999999999988 4 89999999999999999999999998765 4555555
Q ss_pred eeccCCCCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchh
Q 037049 75 IARKVGDPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLM 154 (731)
Q Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (731)
++.+...
T Consensus 84 ~~~~~~~------------------------------------------------------------------------- 90 (175)
T 3nmr_A 84 PADSEKN------------------------------------------------------------------------- 90 (175)
T ss_dssp ECGGGCC-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 4432100
Q ss_pred hhhhhccccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCC
Q 037049 155 ADQKAKVSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDD 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 234 (731)
T Consensus 91 -------------------------------------------------------------------------------- 90 (175)
T 3nmr_A 91 -------------------------------------------------------------------------------- 90 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHH
Q 037049 235 DDDDGEEEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDE 314 (731)
Q Consensus 235 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~ 314 (731)
. ....++|||+|||+.+++++
T Consensus 91 ----------------------------------------~-------------------~~~~~~l~v~nl~~~~t~~~ 111 (175)
T 3nmr_A 91 ----------------------------------------N-------------------AVEDRKLFIGMISKKCTEND 111 (175)
T ss_dssp ----------------------------------------S-------------------CGGGSEEEEESCCTTCCHHH
T ss_pred ----------------------------------------c-------------------cCCCCeEEEcCCCCcCCHHH
Confidence 0 11234899999999999999
Q ss_pred HHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC---CeEEEEEecC
Q 037049 315 LREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ---GRLLHVMPAR 376 (731)
Q Consensus 315 l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~---g~~l~V~~a~ 376 (731)
|+++|+.||.|..+.++++. +|.++|||||.|.+.++|.+|+..|||..+. |++|.|.||.
T Consensus 112 l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 112 IRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999999997 7999999999999999999999999998776 4999999974
No 15
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=3e-28 Score=232.29 Aligned_cols=159 Identities=23% Similarity=0.384 Sum_probs=144.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
+.++|||+|||..+++++|+++|+.||.|..+.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 467999999999999999999999999999998874 45899999999999999999999999999999999996
Q ss_pred CCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEE
Q 037049 567 SDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL 646 (731)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~ 646 (731)
... ...+.++|||+|||..+|+++|+++|+.||. |.
T Consensus 82 ~~~-----------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---i~ 117 (168)
T 1b7f_A 82 PGG-----------------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGS---IV 117 (168)
T ss_dssp CCS-----------------------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSC---EE
T ss_pred CCc-----------------------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCc---EE
Confidence 431 1224578999999999999999999999999 99
Q ss_pred EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEec
Q 037049 647 SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG--HALILQLC 697 (731)
Q Consensus 647 ~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G--r~l~v~~a 697 (731)
.++++.+..+|. ++|||||+|.+.++|.+|+..|||..|.| ++|.|.||
T Consensus 118 ~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 118 QKNILRDKLTGR--PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEcCCCCC--cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999865544 89999999999999999999999999988 99999997
No 16
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=3.9e-28 Score=231.17 Aligned_cols=159 Identities=22% Similarity=0.408 Sum_probs=142.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCC------CEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTK------TLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~k------g~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
+.++|||+|||..+++++|+++|+.||.|..+.+.+.+ |+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35799999999999999999999999999999887543 899999999999999999999999999999999996
Q ss_pred CCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEE
Q 037049 567 SDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL 646 (731)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~ 646 (731)
... ......+|||+|||..+|+++|+++|+.||. |.
T Consensus 81 ~~~-----------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---i~ 116 (167)
T 1fxl_A 81 PSS-----------------------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGR---II 116 (167)
T ss_dssp CCC-----------------------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSC---EE
T ss_pred CCc-----------------------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCC---Ee
Confidence 421 1123467999999999999999999999999 99
Q ss_pred EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE--EEEEec
Q 037049 647 SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA--LILQLC 697 (731)
Q Consensus 647 ~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~--l~v~~a 697 (731)
.++++.+..+|. ++|||||+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 117 ~~~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 117 TSRILVDQVTGV--SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999864544 8999999999999999999999999999975 888887
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=4.1e-28 Score=232.35 Aligned_cols=159 Identities=19% Similarity=0.294 Sum_probs=144.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccc----C-------ceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEE
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKF----G-------SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~----G-------~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~ 561 (731)
+.++|||+|||..+++++|+++|++| | .|..+.+.+++|||||+|.+.++|.+|+ .|||..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46799999999999999999999999 7 7888888899999999999999999999 8999999999999
Q ss_pred EEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccC
Q 037049 562 LEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIK 641 (731)
Q Consensus 562 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~ 641 (731)
|.++.... ......+|||+|||..+|+++|+++|+.||.
T Consensus 82 v~~~~~~~-----------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 120 (172)
T 2g4b_A 82 IRRPHDYQ-----------------------------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGP 120 (172)
T ss_dssp EECCSSCC-----------------------------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred ecCCcccC-----------------------------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC
Confidence 99875321 1123568999999999999999999999999
Q ss_pred cccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 037049 642 EGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698 (731)
Q Consensus 642 ~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak 698 (731)
|..++|+.+..+|. ++|||||+|.+.++|.+|+..|||..|+|++|.|.||.
T Consensus 121 ---v~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 121 ---LKAFNLVKDSATGL--SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp ---EEEEEEEECTTTCS--EEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---ceEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999865544 89999999999999999999999999999999999983
No 18
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2e-27 Score=236.58 Aligned_cols=174 Identities=18% Similarity=0.278 Sum_probs=148.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
..++|||+|||..+++++|+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999999999999999999999998863 57999999999999999999999999999999998886
Q ss_pred CCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEE
Q 037049 567 SDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL 646 (731)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~ 646 (731)
...... ........ .....++|||+|||..+|+++|+++|+.||. |.
T Consensus 107 ~~~~~~------------------~~~~~~~~------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~ 153 (216)
T 2qfj_A 107 NIGQAQ------------------PIIDQLAE------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGK---IK 153 (216)
T ss_dssp CCGGGH------------------HHHHHHHH------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSC---EE
T ss_pred Cccccc------------------hhhhhhhc------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCC---ee
Confidence 432110 00000000 1235578999999999999999999999999 99
Q ss_pred EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 647 SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 647 ~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
.++|+.+..+|. ++|||||+|.+.++|.+|+..|||..|+|++|.|.||+++.
T Consensus 154 ~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 154 SATLARDPTTGK--HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEEEEecCCCCC--cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999999875544 89999999999999999999999999999999999998874
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=7.8e-28 Score=235.66 Aligned_cols=173 Identities=18% Similarity=0.319 Sum_probs=143.6
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEE
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLE 563 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~ 563 (731)
.....++|||+|||..+++++|+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999998864 467999999999999999976 8999999999999
Q ss_pred eCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcc
Q 037049 564 WAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEG 643 (731)
Q Consensus 564 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~ 643 (731)
++........ .....+.++|||+|||..+|+++|+++|+.||.
T Consensus 88 ~~~~~~~~~~-----------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-- 130 (196)
T 1l3k_A 88 RAVSREDSQR-----------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK-- 130 (196)
T ss_dssp ECCC----------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSC--
T ss_pred cccCcccccc-----------------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC--
Confidence 9864321100 002235578999999999999999999999999
Q ss_pred cEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCchhh
Q 037049 644 RILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKDEQ 704 (731)
Q Consensus 644 ~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~~~ 704 (731)
|..++|+.+..+|. ++|||||+|.+.++|.+|+.. +|..|+|++|.|.+|.++....
T Consensus 131 -i~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 131 -IEVIEIMTDRGSGK--KRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -EEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred -eEEEEEeecCCCCC--ccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99999999875544 899999999999999999986 8999999999999999987653
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.3e-27 Score=234.55 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=143.5
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhcccCceeEEEccC-CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCcc
Q 037049 493 SNHVFLVKNLP-YDSSEGELAKMFGKFGSLDKVILPS-TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVL 570 (731)
Q Consensus 493 ~~~~l~V~NLp-~~~te~~L~~~F~~~G~i~~v~l~~-~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 570 (731)
++++|||+||| ..+++++|+++|++||.|.+|++++ .+|||||+|.+.++|.+|+..|||..+.|+.|.|.++.....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46799999999 8999999999999999999998886 579999999999999999999999999999999999965432
Q ss_pred ccCCC-C-cCCCCC--cccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccE-
Q 037049 571 SQSST-S-KGNQKN--DAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI- 645 (731)
Q Consensus 571 ~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I- 645 (731)
.+... . ...... ........+....... .......++.+|||+|||..+|+++|+++|+.||. |
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--------~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~---v~ 151 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA--------AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV---KR 151 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHH--------TTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC---CC
T ss_pred CCCcccccccCCccccccCCCccccccCcccc--------cccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC---cc
Confidence 11100 0 000000 0000000000000000 00112346788999999999999999999999999 8
Q ss_pred -EEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc----EEEEEec
Q 037049 646 -LSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH----ALILQLC 697 (731)
Q Consensus 646 -~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr----~l~v~~a 697 (731)
.+++|+.+. +. ++|||||+|.+.++|.+||..|||..|.|+ ++.|.||
T Consensus 152 ~~~v~~~~~~--~~--~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 152 PTSVKVFSGK--SE--RSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSEEEECSCC--SS--SSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred eEEEEEEcCC--CC--CceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 889988764 22 579999999999999999999999999888 5766665
No 21
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.9e-27 Score=231.97 Aligned_cols=183 Identities=16% Similarity=0.228 Sum_probs=150.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccc----C-------ceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEE
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKF----G-------SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLY 561 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~----G-------~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~ 561 (731)
..++|||+|||..+++++|+++|+.| | .|..+.+.+++|||||+|.+.++|.+|+ .|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46799999999999999999999999 5 7788888889999999999999999999 8999999999999
Q ss_pred EEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccC
Q 037049 562 LEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIK 641 (731)
Q Consensus 562 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~ 641 (731)
|.++................ ...........+.++|||+|||..+|+++|+++|+.||.
T Consensus 82 v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVY---------------------VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 140 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCC---------------------CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC
T ss_pred EeCCCCCCCCCCCcCCCcCC---------------------CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 99986532111100000000 000011113356788999999999999999999999999
Q ss_pred cccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCch
Q 037049 642 EGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKKD 702 (731)
Q Consensus 642 ~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~~ 702 (731)
|..++++.+..+|. ++|||||+|.+.++|.+|+..|||..|+|++|.|.+|+++..
T Consensus 141 ---v~~~~~~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 141 ---LKAFNLVKDSATGL--SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp ---EEEEEEEECTTTCS--EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ---ccEEEEeecCCCCC--cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999865544 899999999999999999999999999999999999988753
No 22
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.9e-27 Score=227.75 Aligned_cols=78 Identities=28% Similarity=0.425 Sum_probs=75.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||.|.+.++|.+|+..|||..+.|+.|.|.+|.
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 489999999999999999999999999999999998899999999999999999999999999999999999999973
No 23
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=2.1e-27 Score=228.03 Aligned_cols=161 Identities=23% Similarity=0.423 Sum_probs=141.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCC--CceeEEEEEecCHHHHHHHHHHcCCcccC---CeEEE
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTK--RSKGIAYVLYAIPESASRAIEVLDNSIFQ---GRLLH 371 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g--~~~g~afV~F~~~e~A~~Al~~l~~~~~~---g~~l~ 371 (731)
+.++|||+|||+.+++++|+++|+.||.|.+|++++++.+| +++|||||.|.+.++|..|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45699999999999999999999999999999999999776 89999999999999999999999998776 57777
Q ss_pred EEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHH
Q 037049 372 VMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLA 451 (731)
Q Consensus 372 V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a 451 (731)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 777653211
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC---
Q 037049 452 VRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS--- 528 (731)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~--- 528 (731)
.....++|||+|||..+++++|+++|++||.|..+.+.+
T Consensus 91 --------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~ 132 (175)
T 3nmr_A 91 --------------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD 132 (175)
T ss_dssp --------------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred --------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC
Confidence 122356899999999999999999999999999998874
Q ss_pred --CCCEEEEEeCCHHHHHHHHHhcCCCccC---CceEEEEeCC
Q 037049 529 --TKTLALVVFLEPVEAAAAFKGLAYKRYK---GVPLYLEWAP 566 (731)
Q Consensus 529 --~kg~afV~F~~~e~A~~Ai~~lng~~~~---gr~l~v~~a~ 566 (731)
++|||||+|.+.++|.+|+..|||..+. |++|.|.||.
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 133 GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 3789999999999999999999998776 4999999983
No 24
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=5.3e-28 Score=230.37 Aligned_cols=160 Identities=17% Similarity=0.367 Sum_probs=141.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccC------CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 493 SNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPS------TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 493 ~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~------~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
+.++|||+|||..+++++|+++|++||.|..+.+.+ ++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999874 468999999999999999984 578999999998875
Q ss_pred CCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEE
Q 037049 567 SDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL 646 (731)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~ 646 (731)
... ...+..+|||+|||..+|+++|+++|+.||. |.
T Consensus 80 ~~~-----------------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~ 115 (167)
T 2cjk_A 80 PRD-----------------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT---II 115 (167)
T ss_dssp CHH-----------------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSC---CS
T ss_pred chh-----------------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCcc---EE
Confidence 321 0013457999999999999999999999999 99
Q ss_pred EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCCc
Q 037049 647 SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAKK 701 (731)
Q Consensus 647 ~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~~ 701 (731)
+++|+.+..+|. ++|||||+|.+.++|.+|++ +||..|.|++|.|.||+++.
T Consensus 116 ~~~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 116 DAQLMLDKDTGQ--SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp EEECCCSSSSST--TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred EEEEEEcCCCCc--cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 999999865544 89999999999999999998 89999999999999999873
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=5.2e-27 Score=235.57 Aligned_cols=195 Identities=20% Similarity=0.254 Sum_probs=149.5
Q ss_pred CcCCCcEEEEeCCCC-CCCHHHHHHHhcccCceeEEEccCC-CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCC
Q 037049 490 LKRSNHVFLVKNLPY-DSSEGELAKMFGKFGSLDKVILPST-KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~-~~te~~L~~~F~~~G~i~~v~l~~~-kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~ 567 (731)
...+.++|||+|||. .+++++|+++|+.||.|..|.+.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 455678999999999 9999999999999999999998865 59999999999999999999999999999999999965
Q ss_pred CccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhcccc-CcccEE
Q 037049 568 DVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHI-KEGRIL 646 (731)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G-~~~~I~ 646 (731)
....................... . ................++++|||+|||..+|+++|+++|..|| . |.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~---i~ 180 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSP-L-----HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV---VK 180 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCS-S-----CCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC---EE
T ss_pred ccccCccccccccccccccccCc-c-----cccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC---ee
Confidence 43221111000000000000000 0 0000000000011234578899999999999999999999999 8 99
Q ss_pred EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEeccCC
Q 037049 647 SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD-GHALILQLCHAK 700 (731)
Q Consensus 647 ~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~-Gr~l~v~~ak~~ 700 (731)
.++|+.. .+|||||+|.+.++|.+|+..|||..|. |++|.|.||+++
T Consensus 181 ~v~i~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 181 GFKFFQK-------DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEECSS-------STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEEC-------CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999763 5789999999999999999999999999 999999999875
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=7e-27 Score=229.26 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=79.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
..++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||.|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45699999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 037049 377 HKK 379 (731)
Q Consensus 377 ~~~ 379 (731)
++.
T Consensus 193 ~~~ 195 (198)
T 2yh0_A 193 VGA 195 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 27
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1e-26 Score=228.07 Aligned_cols=191 Identities=20% Similarity=0.263 Sum_probs=147.4
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhcccCceeEEEccCC-CCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccc
Q 037049 494 NHVFLVKNLPY-DSSEGELAKMFGKFGSLDKVILPST-KTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLS 571 (731)
Q Consensus 494 ~~~l~V~NLp~-~~te~~L~~~F~~~G~i~~v~l~~~-kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 571 (731)
+++|||+|||. .+++++|+++|+.||.|..|.+.+. +|||||+|.+.++|.+|+..|||..+.|+.|.|.|+......
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 57999999999 9999999999999999999999865 699999999999999999999999999999999999654321
Q ss_pred cCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhcccc-CcccEEEEEE
Q 037049 572 QSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHI-KEGRILSVKV 650 (731)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G-~~~~I~~vki 650 (731)
................... . ................++++|||+|||..+|+++|+++|+.|| . |..++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~-----~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~---v~~v~i 153 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSP-L-----HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV---VKGFKF 153 (198)
T ss_dssp CSSSSSSSSSCEEESSCCC-T-----TSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC---CCEEEE
T ss_pred CCCcCCccccccccccCCc-h-----hhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC---ceEEEE
Confidence 1111000000000000000 0 0000000000111234678899999999999999999999999 8 999999
Q ss_pred eeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEeccCC
Q 037049 651 KKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD-GHALILQLCHAK 700 (731)
Q Consensus 651 ~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~-Gr~l~v~~ak~~ 700 (731)
+.+ .+|||||+|.+.++|.+|+..|||..|. |++|.|.||+++
T Consensus 154 ~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK-------DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SST-------TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 764 4799999999999999999999999999 999999999875
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.9e-26 Score=221.46 Aligned_cols=161 Identities=23% Similarity=0.304 Sum_probs=139.0
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeE-----EEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEe
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDK-----VILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEW 564 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~-----v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~ 564 (731)
...+.++|||+|||..+++++|+++|..||.+.. ....+++|||||+|.+.++|.+|+ .|||..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567889999999999999999999999987654 223358899999999999999999 5999999999999999
Q ss_pred CCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCccc
Q 037049 565 APSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGR 644 (731)
Q Consensus 565 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~ 644 (731)
+..... ....+.++|||+|||..+|+++|+++|+.||.
T Consensus 88 ~~~~~~---------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--- 125 (175)
T 1fje_B 88 PKGRDS---------------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALE--- 125 (175)
T ss_dssp CCCSSC---------------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSE---
T ss_pred CCCccc---------------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCe---
Confidence 965320 01224568999999999999999999999998
Q ss_pred EEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeccCC
Q 037049 645 ILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCHAK 700 (731)
Q Consensus 645 I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak~~ 700 (731)
|..+ ..++ .++|||||+|.+.++|.+|+..|||..|.|++|.|.||+++
T Consensus 126 v~~~-----~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 126 IRLV-----SQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEE-----CSSS--SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEEe-----cCCC--CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 8766 2233 48999999999999999999999999999999999999886
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=4.7e-26 Score=236.45 Aligned_cols=200 Identities=19% Similarity=0.276 Sum_probs=147.1
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHH----HHhcccCceeEEEccC---CCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEE
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELA----KMFGKFGSLDKVILPS---TKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~----~~F~~~G~i~~v~l~~---~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v 562 (731)
...+.++|||+|||..+++++|+ ++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34568899999999999999966 8999999999998874 7899999999999999999999999999999999
Q ss_pred EeCCCCccccCCCCcCCCCCc-ccccchhhHh--hhHHhhhh--------------------------------------
Q 037049 563 EWAPSDVLSQSSTSKGNQKND-AVVGEHDAKR--ALLEQQLE-------------------------------------- 601 (731)
Q Consensus 563 ~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-------------------------------------- 601 (731)
.|+.................. .......... ........
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 999653321000000000000 0000000000 00000000
Q ss_pred -----------------------------cCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEee
Q 037049 602 -----------------------------GVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKK 652 (731)
Q Consensus 602 -----------------------------~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~ 652 (731)
............+.++|||+|||..+|+++|+++|+.||. |.+|+|+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~---i~~v~~~~ 241 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPG---FKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCC---eEEEEEec
Confidence 0000001123345678999999999999999999999999 99999996
Q ss_pred ecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEeccC
Q 037049 653 HLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD-GHALILQLCHA 699 (731)
Q Consensus 653 ~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~-Gr~l~v~~ak~ 699 (731)
+ .+|||||+|.+.++|.+|+..|||+.|. |++|+|+||+.
T Consensus 242 ~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 G-------RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred C-------CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 4 3689999999999999999999999999 99999999974
No 30
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=4.4e-26 Score=228.79 Aligned_cols=197 Identities=20% Similarity=0.225 Sum_probs=150.6
Q ss_pred hhcccCCCCeEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeE
Q 037049 291 VQQEVLESGRLFVRNLPY-TATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRL 369 (731)
Q Consensus 291 ~~~~~~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~ 369 (731)
.......+++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344466789999999999 99999999999999999999998765 789999999999999999999999999999
Q ss_pred EEEEecCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccch
Q 037049 370 LHVMPARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREAND 449 (731)
Q Consensus 370 l~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 449 (731)
|.|.++............. ..... . .+.. ........+
T Consensus 102 l~v~~a~~~~~~~~~~~~~-----~~~~~----------------~----~~~~-------------~~~~~~~~~---- 139 (229)
T 2adc_A 102 IRITLSKHQNVQLPREGQE-----DQGLT----------------K----DYGN-------------SPLHRFKKP---- 139 (229)
T ss_dssp CEEECCSCCCCCCCCSSSS-----TTTTE----------------E----ECTT-------------CSSCCCCST----
T ss_pred EEEEEecCccccCcccccc-----ccccc----------------c----cccc-------------CcccccCCc----
Confidence 9999998653211000000 00000 0 0000 000000000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccC-ceeEEEcc-
Q 037049 450 LAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLDKVILP- 527 (731)
Q Consensus 450 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G-~i~~v~l~- 527 (731)
..........+.++|||+|||..+++++|+++|++|| .|..+.+.
T Consensus 140 ---------------------------------~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 140 ---------------------------------GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp ---------------------------------TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ---------------------------------cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 0000001234578999999999999999999999999 99999984
Q ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCCccC-CceEEEEeCCC
Q 037049 528 STKTLALVVFLEPVEAAAAFKGLAYKRYK-GVPLYLEWAPS 567 (731)
Q Consensus 528 ~~kg~afV~F~~~e~A~~Ai~~lng~~~~-gr~l~v~~a~~ 567 (731)
.++|+|||+|.+.++|.+|+..|||..+. |+.|.|.|+..
T Consensus 187 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 187 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 58999999999999999999999999999 99999999965
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=4e-26 Score=236.97 Aligned_cols=239 Identities=18% Similarity=0.290 Sum_probs=153.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEE
Q 037049 295 VLESGRLFVRNLPYTATEDELR----EHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l 370 (731)
...+++|||+|||+.+++++|+ ++|+.||.|..|++++ +|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999976 8999999999999876 78899999999999999999999999999999999
Q ss_pred EEEecCCCCCCchhhcccccccCCchhhHH---HHHHHHHhhhc----------------------------cCcccccc
Q 037049 371 HVMPARHKKSSDKQELHNSTSQGTKTLKQR---REEERKASEAS----------------------------GNTKAWNS 419 (731)
Q Consensus 371 ~V~~a~~~~~~~~~~~~~~~~~~~~~~k~~---~~~~~~~~~~~----------------------------~~~~~~~~ 419 (731)
.|.++............... ......... ..+........ .....+..
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999765431111100000 000000000 00000000000 00011122
Q ss_pred ccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEE
Q 037049 420 LFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLV 499 (731)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 499 (731)
.+........ ..+........... . . ........ ..........+.++|||
T Consensus 162 ~~~~~p~~~~----~~~~~~~~~~~~~~--~------~--------------~~~~~~~~---~~~~~~~~~~~~~~l~v 212 (282)
T 3pgw_A 162 PYMPPPGMIP----PPGLAPGQIPPGAM--P------P--------------QQLMPGQM---PPAQPLSENPPNHILFL 212 (282)
T ss_pred CCCCCCCCCC----CCCCCccccCcccC--c------c--------------cccCcccc---CccCCccCCCCCCEEEE
Confidence 2221110000 00000000000000 0 0 00000000 00001113445789999
Q ss_pred eCCCCCCCHHHHHHHhcccCceeEEEccCCC-CEEEEEeCCHHHHHHHHHhcCCCccC-CceEEEEeCC
Q 037049 500 KNLPYDSSEGELAKMFGKFGSLDKVILPSTK-TLALVVFLEPVEAAAAFKGLAYKRYK-GVPLYLEWAP 566 (731)
Q Consensus 500 ~NLp~~~te~~L~~~F~~~G~i~~v~l~~~k-g~afV~F~~~e~A~~Ai~~lng~~~~-gr~l~v~~a~ 566 (731)
+|||..+++++|+++|++||.|..|.+.+.+ |||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 213 ~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 213 TNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred eCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999999999999998765 99999999999999999999999999 9999999985
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.9e-26 Score=233.88 Aligned_cols=160 Identities=23% Similarity=0.306 Sum_probs=146.4
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCc
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 569 (731)
.....++|||+|||..+|+++|+++|+.||.|..|.+.+++|||||+|.+.++|..|+..|||..+.|+.|.|.++..
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred cccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEE
Q 037049 570 LSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK 649 (731)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vk 649 (731)
+++|||+|||..+|+++|+++|+.||. |..|+
T Consensus 96 ---------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~---i~~v~ 127 (261)
T 3sde_A 96 ---------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP---VEKAV 127 (261)
T ss_dssp ---------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC---EEEEE
T ss_pred ---------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC---eEEEE
Confidence 247999999999999999999999999 99999
Q ss_pred EeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC-CCccC---CcEEEEEeccCCch
Q 037049 650 VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ-GTILD---GHALILQLCHAKKD 702 (731)
Q Consensus 650 i~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln-g~~i~---Gr~l~v~~ak~~~~ 702 (731)
|+.+. +| .++|||||+|.+.++|.+|+..|| |..+. ||+|.|.++.+..+
T Consensus 128 i~~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 128 VVVDD-RG--RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEET-TS--CEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred eeeCC-CC--CcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99984 54 489999999999999999999995 55554 99999999988754
No 33
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=5.8e-27 Score=225.07 Aligned_cols=163 Identities=21% Similarity=0.269 Sum_probs=142.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|..||.+.. .++.+..+|.++|||||.|.+.++|.+|+ .|||..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456789999999999999999999999998766 33445458889999999999999999999 6999999999999999
Q ss_pred cCCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHH
Q 037049 375 ARHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRI 454 (731)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~ 454 (731)
+.+....
T Consensus 88 ~~~~~~~------------------------------------------------------------------------- 94 (175)
T 1fje_B 88 PKGRDSK------------------------------------------------------------------------- 94 (175)
T ss_dssp CCCSSCS-------------------------------------------------------------------------
T ss_pred CCCcccc-------------------------------------------------------------------------
Confidence 9754220
Q ss_pred HhhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEcc--CCCCE
Q 037049 455 ALGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILP--STKTL 532 (731)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~--~~kg~ 532 (731)
.....++|||+|||..+++++|+++|++||.|..+ .. .++||
T Consensus 95 -----------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~ 138 (175)
T 1fje_B 95 -----------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGI 138 (175)
T ss_dssp -----------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSE
T ss_pred -----------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceE
Confidence 12235689999999999999999999999999877 22 47899
Q ss_pred EEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCC
Q 037049 533 ALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSD 568 (731)
Q Consensus 533 afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~ 568 (731)
|||+|.+.++|.+|+..|||..|.|+.|.|.||..+
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 139 AYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999999999999653
No 34
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=2.8e-26 Score=225.13 Aligned_cols=191 Identities=20% Similarity=0.243 Sum_probs=139.4
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 297 ESGRLFVRNLP-YTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 297 ~~~~l~v~nLp-~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
++++|||+||| ..+++++|+.+|+.||.|.+|+|+.+ ++|||||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999864 3789999999999999999999999999999999999
Q ss_pred CCCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHH
Q 037049 376 RHKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIA 455 (731)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~ 455 (731)
+............. ......+ .+... ....+..+ ..
T Consensus 78 ~~~~~~p~~~~~~~--~~~~~~~---------------------~~~~~-------------~~~r~~~~-----~~--- 113 (205)
T 3tyt_A 78 KQPAIMPGQSYGLE--DGSCSYK---------------------DFSES-------------RNNRFSTP-----EQ--- 113 (205)
T ss_dssp SCSCCCCCSCCBCT--TSCBSEE---------------------ECTTC-------------TTCSCSSH-----HH---
T ss_pred cCCccCCCcccccc--cCCcccc---------------------ccCCC-------------ccccccCc-----cc---
Confidence 75432100000000 0000000 00000 00000000 00
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccCce--eEEEccCC----
Q 037049 456 LGETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFGSL--DKVILPST---- 529 (731)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i--~~v~l~~~---- 529 (731)
.. ......+.++|||+|||..+++++|+++|++||.| .++.+.+.
T Consensus 114 ---------------~~--------------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~ 164 (205)
T 3tyt_A 114 ---------------AA--------------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSER 164 (205)
T ss_dssp ---------------HT--------------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSS
T ss_pred ---------------cc--------------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCC
Confidence 00 00012456789999999999999999999999999 88888753
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccCCc----eEEEEeC
Q 037049 530 KTLALVVFLEPVEAAAAFKGLAYKRYKGV----PLYLEWA 565 (731)
Q Consensus 530 kg~afV~F~~~e~A~~Ai~~lng~~~~gr----~l~v~~a 565 (731)
+|+|||+|.+.++|.+|+..|||..+.|+ ++.|.++
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 58999999999999999999999999877 5666654
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=9e-26 Score=231.17 Aligned_cols=154 Identities=28% Similarity=0.435 Sum_probs=141.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 47999999999999999999999999999999765 79999999999999999999999999999999997652
Q ss_pred CCCCCCCccccccchhhhccccCCChhhhhhccCcccccccccCCChhHHHHHHhcCccccccccccccccchhhhhhhc
Q 037049 81 DPNMPRPWSRYSLKKEKEVSEDEKNPVLAAKRGEKKTIEKVTENDDPQLLEFLQVMQPRVKSKMWANDTLIGLMADQKAK 160 (731)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (731)
T Consensus 96 -------------------------------------------------------------------------------- 95 (261)
T 3sde_A 96 -------------------------------------------------------------------------------- 95 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhccCCCccccccccCCCCcccccchhhhhhhhhhccCCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCc
Q 037049 161 VSENISQAIKGGEKSITLHVKSDKSNVITDSQATEKSKNAAADELMSDMDYFKSRVKKDWSDSESEDDSAGDDDDDDDGE 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 240 (731)
T Consensus 96 -------------------------------------------------------------------------------- 95 (261)
T 3sde_A 96 -------------------------------------------------------------------------------- 95 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCccccchhhcccCCCCCCCcccCCCCCCCCCCCCCCcchhcccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 037049 241 EEEEEENDHNGDSNEECDSIIKDSIHSGVGEEDANGEIVDPGNPSSSSKDVQQEVLESGRLFVRNLPYTATEDELREHFS 320 (731)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 320 (731)
.++|||+|||+.+++++|+.+|+
T Consensus 96 ---------------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 96 ---------------------------------------------------------GAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp ---------------------------------------------------------SSEEEEESCCTTCCHHHHHHHHG
T ss_pred ---------------------------------------------------------CCcccccCCCCCCCHHHHHHHHH
Confidence 12799999999999999999999
Q ss_pred cCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC-CcccC---CeEEEEEecCCCC
Q 037049 321 KFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD-NSIFQ---GRLLHVMPARHKK 379 (731)
Q Consensus 321 ~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~-~~~~~---g~~l~V~~a~~~~ 379 (731)
.||.|..|.|+.+. +|.++|||||.|.+.++|.+|+..|| +..+. |++|.|.++.+..
T Consensus 119 ~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 119 QFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp GGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999999999996 89999999999999999999999995 44544 9999999998653
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=6.9e-26 Score=222.22 Aligned_cols=190 Identities=22% Similarity=0.261 Sum_probs=146.1
Q ss_pred CCeEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 298 SGRLFVRNLPY-TATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 298 ~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
+++|||+|||+ .+++++|+++|+.||.|..|+++.++ +|||||.|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 56999999999 99999999999999999999998764 7899999999999999999999999999999999998
Q ss_pred CCCCCchhhcccccccCCchhhHHHHHHHHHhhhccCccccccccCChhhHHHHHHHhcCCCcccccCcccchHHHHHHh
Q 037049 377 HKKSSDKQELHNSTSQGTKTLKQRREEERKASEASGNTKAWNSLFMRPDTVVENIARKHGVSKSDLLDREANDLAVRIAL 456 (731)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~~~~ 456 (731)
............ . . .... .+.. +..
T Consensus 78 ~~~~~~~~~~~~----~-~----------------~~~~----~~~~--------------~~~---------------- 102 (198)
T 1qm9_A 78 HQNVQLPREGQE----D-Q----------------GLTK----DYGN--------------SPL---------------- 102 (198)
T ss_dssp CCSCCCSSSSSS----S-S----------------SCEE----ESSC--------------CCT----------------
T ss_pred CCCcCCCCcCCc----c-c----------------cccc----cccC--------------Cch----------------
Confidence 653211000000 0 0 0000 0000 000
Q ss_pred hhhHHHHHHHHHHHhcCCCcccccccccCCCCCCcCCCcEEEEeCCCCCCCHHHHHHHhcccC-ceeEEEcc-CCCCEEE
Q 037049 457 GETQVIAETKKALTNAGVNVSSLEEFSAGKTDGLKRSNHVFLVKNLPYDSSEGELAKMFGKFG-SLDKVILP-STKTLAL 534 (731)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~te~~L~~~F~~~G-~i~~v~l~-~~kg~af 534 (731)
..+.............+.++|||+|||..+++++|+++|++|| .|..+.+. ..+|+||
T Consensus 103 --------------------~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 103 --------------------HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp --------------------TSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred --------------------hhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 0000000000001234578999999999999999999999999 99999885 4899999
Q ss_pred EEeCCHHHHHHHHHhcCCCccC-CceEEEEeCCC
Q 037049 535 VVFLEPVEAAAAFKGLAYKRYK-GVPLYLEWAPS 567 (731)
Q Consensus 535 V~F~~~e~A~~Ai~~lng~~~~-gr~l~v~~a~~ 567 (731)
|+|.+.++|.+|+..|||..+. |+.|.|.|+..
T Consensus 163 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 163 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 9999999999999999999999 99999999864
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=7.6e-21 Score=168.34 Aligned_cols=107 Identities=24% Similarity=0.419 Sum_probs=75.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 037049 615 SRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALIL 694 (731)
Q Consensus 615 ~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v 694 (731)
.++|||+|||+.+|+++|+++|+.||. |.+|+|+.+. + .++|||||+|.+.++|.+||..|||..|+|++|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~---v~~v~i~~d~--~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN---ILSCKVVCDE--N--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC---EEEEEEEEET--T--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC---EEEEEEeecC--C--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 457999999999999999999999999 9999999985 2 27999999999999999999999999999999999
Q ss_pred EeccCCchhhHHhhhccCCCCceEEEeeccceeee
Q 037049 695 QLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQR 729 (731)
Q Consensus 695 ~~ak~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 729 (731)
.+|+++..... ......+..++|||+|||..+|+
T Consensus 78 ~~a~~~~~~~~-~~~~~~~~~~~lyv~Nl~~~~T~ 111 (115)
T 4f25_A 78 GRFKSRKEREA-ELGARAKEFTNVYIKNFGPGSTR 111 (115)
T ss_dssp EESSCCCC---------------------------
T ss_pred EECCCcccccc-ccccccCCCCceEeCCCCCCccc
Confidence 99988765422 22234456788999999999986
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=6.6e-20 Score=172.49 Aligned_cols=84 Identities=36% Similarity=0.545 Sum_probs=79.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||.|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34699999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCC
Q 037049 377 HKKS 380 (731)
Q Consensus 377 ~~~~ 380 (731)
+...
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7644
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2e-19 Score=169.14 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=109.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCC
Q 037049 528 STKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDAD 607 (731)
Q Consensus 528 ~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (731)
+.+|||||+|.++++|.+|+..+++....+..+.+............. ....
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~ 62 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------------HHHH 62 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------------CCSS
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------------cccc
Confidence 478999999999999999999988754433333333222111000000 0001
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 608 IDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 608 ~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
........++|||+|||..+|+++|+++|+.||. |..|+|+.++.+|. ++|||||.|.+.++|.+|+..|||..|
T Consensus 63 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~---v~~~~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 63 HHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR---VGDVYIPRDRYTKE--SRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSC---EEEEECCCCSSCTT--SCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEeecCCCCc--cceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 1113345678999999999999999999999999 99999999875554 999999999999999999999999999
Q ss_pred CCcEEEEEeccCCch
Q 037049 688 DGHALILQLCHAKKD 702 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~~ 702 (731)
.|++|.|.||+++..
T Consensus 138 ~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 138 DGRELRVQMARYGRP 152 (158)
T ss_dssp SSSEEEEEEECCSSC
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999988744
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=155.46 Aligned_cols=78 Identities=37% Similarity=0.583 Sum_probs=75.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
|+|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|++||+.|||..++|++|+|.+|+|
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 6899999999999999999999999999999999987 99999999999999999999999999999999999999986
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=2.3e-19 Score=167.05 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=113.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHhc-CCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCC
Q 037049 528 STKTLALVVFLEPVEAAAAFKGL-AYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDA 606 (731)
Q Consensus 528 ~~kg~afV~F~~~e~A~~Ai~~l-ng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (731)
+-+|+++|+|.+.++|.+|+..| ||..+.| .|.+.++............. ...
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------------------~~~ 64 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------------------HHH 64 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC-------------------------CCC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc-------------------------ccc
Confidence 35799999999999999999999 9999999 99999986533211110000 000
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 607 DIDPDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 607 ~~~~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
.......+.++|||+|||..+|+++|+++|+.||. |.+|+|+.+ ++|||||.|.+.++|.+|+..|||..
T Consensus 65 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 65 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGP---LRSVWVARN-------PPGFAFVEFEDPRDAADAVRELDGRT 134 (150)
T ss_dssp SCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSC---EEEEEECSS-------SCSEEEEEESSHHHHHHHHHHHSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC---EEEEEEeeC-------CCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 11123456788999999999999999999999999 999999975 68999999999999999999999999
Q ss_pred cCCcEEEEEeccCCc
Q 037049 687 LDGHALILQLCHAKK 701 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~ 701 (731)
|.|++|+|.||+++.
T Consensus 135 ~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 135 LCGCRVRVELSNGEK 149 (150)
T ss_dssp SSSSCCEEEECCCCC
T ss_pred ECCeEEEEEEcCCCC
Confidence 999999999998863
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=4.4e-19 Score=156.97 Aligned_cols=80 Identities=33% Similarity=0.578 Sum_probs=75.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARH 377 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~ 377 (731)
..+|||+|||+.+++++|+++|+.||.|.+|+|+++. +.++|||||.|.+.++|.+||+.|+|..|.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999986 44899999999999999999999999999999999999986
Q ss_pred CC
Q 037049 378 KK 379 (731)
Q Consensus 378 ~~ 379 (731)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=150.44 Aligned_cols=83 Identities=20% Similarity=0.378 Sum_probs=77.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
...+++|||+|||..+|+++|+++|+.||. |.+|+|++++.+|. ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~--~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGE---VESAKLIRDKVAGH--SLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSC---EEEEEEEECSSSCC--EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEeEeeecCCCCc--ccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 446789999999999999999999999999 99999999876554 8999999999999999999999999999999
Q ss_pred EEEEeccC
Q 037049 692 LILQLCHA 699 (731)
Q Consensus 692 l~v~~ak~ 699 (731)
|+|.||+|
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999986
No 44
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=3e-18 Score=159.52 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||+.+++++|+.+|+.||.|..|+|+.+ ++|||||.|.+.++|..|+..|||..|.|+.|+|.++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34569999999999999999999999999999999875 5899999999999999999999999999999999999
Q ss_pred CCCC
Q 037049 376 RHKK 379 (731)
Q Consensus 376 ~~~~ 379 (731)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=143.84 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
.+.++|||+|||+.+|+++|+++|++||. |.+|+|+.+..+++ ++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~--~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGE---VEEVEILLHPRTRK--HLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC---EEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCC---eeEEEEEECCCCCc--eeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 46788999999999999999999999999 99999999976555 99999999999999999999999999999999
Q ss_pred EEEeccCCchhhH
Q 037049 693 ILQLCHAKKDEQV 705 (731)
Q Consensus 693 ~v~~ak~~~~~~~ 705 (731)
.|.+|..+.....
T Consensus 79 ~V~~a~~~~~~~~ 91 (110)
T 3s8s_A 79 HAQLDIKGQQRMK 91 (110)
T ss_dssp EEEECSTTHHHHH
T ss_pred EEEECCCCcHHHH
Confidence 9999987765543
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=6.9e-18 Score=142.26 Aligned_cols=79 Identities=20% Similarity=0.383 Sum_probs=71.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKG--EITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
+|||+|||+++|+++|+++|++|| .|.+|+|++++. |+++|||||+|.+.++|++||+.|||..++|+.|+|.++.+
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 699999999999999999999999 999999999986 99999999999999999999999999999999999999987
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
..
T Consensus 83 ~~ 84 (90)
T 3p5t_L 83 LE 84 (90)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=3.3e-17 Score=135.87 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=75.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|++|+..|||..++|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 4799999999999999999999999999999999976 999999999999999999999999999999999999999864
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=142.33 Aligned_cols=83 Identities=27% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC-CcccCCeEEEEEec
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFG-NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD-NSIFQGRLLHVMPA 375 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~-~~~~~g~~l~V~~a 375 (731)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.++ +..+.|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35899999999999999999999999 89999999999999999999999999999999998774 56899999999999
Q ss_pred CCCCC
Q 037049 376 RHKKS 380 (731)
Q Consensus 376 ~~~~~ 380 (731)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=142.16 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++|+.+|+++|||||.|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CC
Q 037049 376 RH 377 (731)
Q Consensus 376 ~~ 377 (731)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=5e-18 Score=143.19 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=75.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhcccc-CcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHh-CCCccCCcEEE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHI-KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL-QGTILDGHALI 693 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G-~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~l-ng~~i~Gr~l~ 693 (731)
.+|||+|||+.+|+++|+++|+.|| . |.+|+|++++.+|. ++|||||+|.+.++|.+|+..+ |+..|.||+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~---v~~v~i~~d~~t~~--~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQ---AREVRLMRNKSSGQ--SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCC---CSBCCSSSCSSSCC--CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCE---eEEEEEEecCCCCC--cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 5799999999999999999999999 8 99999999876554 8999999999999999999987 56789999999
Q ss_pred EEeccCCch
Q 037049 694 LQLCHAKKD 702 (731)
Q Consensus 694 v~~ak~~~~ 702 (731)
|.||+++..
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999988754
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=142.23 Aligned_cols=78 Identities=18% Similarity=0.375 Sum_probs=72.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC--eEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCC----ccCCceeEE
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE--ITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKS----YLDTCRISC 73 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~----~~~g~~i~v 73 (731)
.+|||+|||+++|+++|+++|++||. |.+|+|++|+. |++||||||+|.+.++|++||+.|||. .++|++|+|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 37999999999999999999999995 67999999988 999999999999999999999999997 488999999
Q ss_pred Eeecc
Q 037049 74 EIARK 78 (731)
Q Consensus 74 ~~a~~ 78 (731)
.+|+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99873
No 52
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.7e-17 Score=139.89 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=77.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++||..|||..+.|+.|+|.++.+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4799999999999999999999999999999999985 999999999999999999999999999999999999999976
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 89 ~~ 90 (99)
T 1whw_A 89 KE 90 (99)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=136.74 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=74.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|+..|||..++|+.|+|.+++++
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 3799999999999999999999999999999999976 999999999999999999999999999999999999999863
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=140.17 Aligned_cols=83 Identities=14% Similarity=0.300 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCC----ccCC
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGT----ILDG 689 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~----~i~G 689 (731)
.-.||||+|||+.+|+++|+++|++||. -.|.+|+|++++.+|. +||||||+|.+.++|.+|++.|||. .|+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~-i~v~~v~i~~d~~tg~--srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYAS-LAVNNIRLIKDKQTQQ--NRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCC-CCGGGEECCCCSSSSS--CSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCC-ccEEEEEEEecCCCCC--CceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4467999999999999999999999995 0156799999876554 9999999999999999999999997 4899
Q ss_pred cEEEEEeccC
Q 037049 690 HALILQLCHA 699 (731)
Q Consensus 690 r~l~v~~ak~ 699 (731)
|+|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999985
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=136.46 Aligned_cols=81 Identities=30% Similarity=0.403 Sum_probs=77.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|.+||..|||..+.|+.|+|.++.++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 5899999999999999999999999999999999987 999999999999999999999999999999999999999875
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 86 ~~ 87 (95)
T 2dnz_A 86 LD 87 (95)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=138.43 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=76.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|..|+|++++.|+++|||||+|.+.++|.+||..|||..++|+.|+|.+++++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 4799999999999999999999999999999999988999999999999999999999999999999999999999864
No 57
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=8.2e-17 Score=136.11 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc--cC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI--LD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~--i~ 688 (731)
...++++|||+|||+.+|+++|+++|++||. |.+++|++ .||||||+|.+.++|.+|+..|+|.. |.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~---V~~v~i~~--------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGP---ISYVVVMP--------KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSC---EEEEEEET--------TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCC---EEEEEEEc--------CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 4567889999999999999999999999999 99999985 58999999999999999999999886 78
Q ss_pred CcEEEEEeccCCc
Q 037049 689 GHALILQLCHAKK 701 (731)
Q Consensus 689 Gr~l~v~~ak~~~ 701 (731)
||+|.|.||+.++
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999999875
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=2e-17 Score=142.33 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=75.9
Q ss_pred CeEEEeCCCC------CCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCC-ceeE
Q 037049 1 SRICVKNLPK------YVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDT-CRIS 72 (731)
Q Consensus 1 s~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g-~~i~ 72 (731)
++|||+|||+ ++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|++||+.|||..+.| +.|+
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~ 86 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF 86 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence 4799999999 999999999999999999999999998 9999999999999999999999999999999 9999
Q ss_pred EEeeccC
Q 037049 73 CEIARKV 79 (731)
Q Consensus 73 v~~a~~~ 79 (731)
|.++.+.
T Consensus 87 V~~a~~~ 93 (100)
T 3ns6_A 87 LYTMKDV 93 (100)
T ss_dssp EEESHHH
T ss_pred EEECchh
Confidence 9999863
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.4e-16 Score=131.93 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=77.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
++|||+|||..+++++|+++|+.||.|..+.+++++.+|.++|||||.|.+.++|..|+..|||..+.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999865
No 60
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=133.87 Aligned_cols=83 Identities=27% Similarity=0.356 Sum_probs=77.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||.|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 037049 376 RHK 378 (731)
Q Consensus 376 ~~~ 378 (731)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 854
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=141.37 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=77.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|++||.|..|.|+.++.|+++|||||+|.+.++|++||..|||..+.|+.|+|.++++..
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999998754
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
.
T Consensus 88 ~ 88 (116)
T 2fy1_A 88 F 88 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=136.48 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=75.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++||+ ||+..++|+.|+|.++.++
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999987 9999999999999999999998 9999999999999999975
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 90 ~ 90 (99)
T 2dgs_A 90 D 90 (99)
T ss_dssp C
T ss_pred c
Confidence 4
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=9.3e-17 Score=137.13 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=76.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.+.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999999987 999999999999999999999999999999999999999864
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1.7e-16 Score=138.01 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=76.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC---ceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDT---CRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g---~~i~v~~a~ 77 (731)
++|||+|||+++++++|+++|++||.|..|+|++++.|+++|||||+|.+.++|.+||..|||..+.| +.|+|.++.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 57999999999999999999999999999999999889999999999999999999999999999998 999999998
Q ss_pred cCC
Q 037049 78 KVG 80 (731)
Q Consensus 78 ~~~ 80 (731)
+..
T Consensus 96 ~~~ 98 (105)
T 2dnh_A 96 TDK 98 (105)
T ss_dssp SSC
T ss_pred cCc
Confidence 754
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.6e-17 Score=139.02 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=76.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|.+||..|||..|.|+.|+|.++.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 16 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp EEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 4799999999999999999999999999999999976 999999999999999999999999999999999999999875
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 96 ~ 96 (103)
T 2cq0_A 96 T 96 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=138.95 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=76.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|.|++++. |+++|||||+|.+.++|++||..|||..++|+.|+|.++.++
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 3699999999999999999999999999999999988 999999999999999999999999999999999999999874
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-17 Score=139.04 Aligned_cols=76 Identities=14% Similarity=0.281 Sum_probs=73.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
+|||+|||+++|+++|+++|++||+|.+|+|++++.|+++|||||+|.+.++|.+||. ++|..++|+.|+|.++..
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 7999999999999999999999999999999999889999999999999999999999 999999999999998774
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.68 E-value=1.2e-16 Score=141.49 Aligned_cols=81 Identities=22% Similarity=0.405 Sum_probs=77.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++||+.|||..|.|+.|+|.+++++
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 4799999999999999999999999999999999986 999999999999999999999999999999999999999976
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 106 ~~ 107 (115)
T 2cpz_A 106 ND 107 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=137.84 Aligned_cols=81 Identities=26% Similarity=0.463 Sum_probs=76.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. ++++|||||+|.+.++|.+||+.|||..|+|+.|+|.++++.
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999987 899999999999999999999999999999999999999975
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 93 ~~ 94 (102)
T 1x5s_A 93 SD 94 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=137.44 Aligned_cols=80 Identities=36% Similarity=0.477 Sum_probs=76.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDA-KLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++||.|..| +|++++. |+++|||||+|.+.++|++||..|||..+.|+.|+|.++.+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 589999999999999999999999999999 9999966 99999999999999999999999999999999999999987
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
..
T Consensus 86 ~~ 87 (96)
T 1x5t_A 86 KD 87 (96)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=137.04 Aligned_cols=80 Identities=33% Similarity=0.516 Sum_probs=76.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|++||.|..|+|+++ .|+++|||||+|.+.++|.+||..|||..+.|+.|+|.++.+..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 57999999999999999999999999999999998 88999999999999999999999999999999999999999754
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
.
T Consensus 95 ~ 95 (103)
T 2d9p_A 95 E 95 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 72
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=136.84 Aligned_cols=77 Identities=27% Similarity=0.410 Sum_probs=73.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITD--------AKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i 71 (731)
++|||+|||+++++++|+++|++||.|.. |+|++++. |+++|||||+|.+.++|++||+.|||..+.|+.|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 47999999999999999999999999999 99999977 9999999999999999999999999999999999
Q ss_pred EEEeec
Q 037049 72 SCEIAR 77 (731)
Q Consensus 72 ~v~~a~ 77 (731)
+|.+|+
T Consensus 94 ~V~~A~ 99 (99)
T 2la6_A 94 KVSFAT 99 (99)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-16 Score=134.43 Aligned_cols=84 Identities=29% Similarity=0.536 Sum_probs=79.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4566799999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98764
No 74
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.5e-16 Score=129.19 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
.+..|||+||+..+|+++|+++|.+||+ |.++++.. +||||||+|.+.++|.+|++.|||..|.||+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~---V~~~~l~~--------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGP---LVSFHPYL--------NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSC---EEEEEEET--------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCC---EEEEEEcC--------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 4567999999999999999999999999 99999865 799999999999999999999999999999999
Q ss_pred EEec
Q 037049 694 LQLC 697 (731)
Q Consensus 694 v~~a 697 (731)
|.+|
T Consensus 75 V~~A 78 (89)
T 2wbr_A 75 AESP 78 (89)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9999
No 75
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.7e-16 Score=132.09 Aligned_cols=82 Identities=27% Similarity=0.507 Sum_probs=77.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.+++++.++.++|||||.|.+.++|..|+..|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 037049 375 AR 376 (731)
Q Consensus 375 a~ 376 (731)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=2.1e-16 Score=131.62 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||+|||..+|+++|+++|+.||. |..++|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD---ITDIQIPLDYETEK--HRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSC---EEEEECCEETTTTE--ECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCC---EEEEEEEECCCCCc--cccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 346788999999999999999999999999 99999999865544 8999999999999999999999999999999
Q ss_pred EEEEecc
Q 037049 692 LILQLCH 698 (731)
Q Consensus 692 l~v~~ak 698 (731)
|+|.||+
T Consensus 79 l~v~~ak 85 (85)
T 3mdf_A 79 IRVNLAK 85 (85)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999986
No 77
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=136.28 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=74.0
Q ss_pred CeEEEeCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLR----DFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
++|||+|||+++++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|++||+.|||..++|++|+|.++
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 479999999999999999 99999999999999998776 899999999999999999999999999999999999
Q ss_pred ccCC
Q 037049 77 RKVG 80 (731)
Q Consensus 77 ~~~~ 80 (731)
++..
T Consensus 88 ~~~~ 91 (96)
T 2dgx_A 88 TGAS 91 (96)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 78
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=136.93 Aligned_cols=84 Identities=31% Similarity=0.540 Sum_probs=80.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 037049 375 ARHK 378 (731)
Q Consensus 375 a~~~ 378 (731)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 79
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=133.65 Aligned_cols=83 Identities=33% Similarity=0.452 Sum_probs=79.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=135.57 Aligned_cols=77 Identities=26% Similarity=0.410 Sum_probs=74.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+.+++++|+++|++||.|..|+|++++.|+++|||||+|.+.++|++||..|||..++|+.|+|.+++
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999886
No 81
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.2e-16 Score=134.82 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=78.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
++++|||+|||..+|+++|+++|+.||. |.+++|+.+..+|. ++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGP---VINLKMMFDPQTGR--SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC---EEEEECCBCTTTCC--BCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCC---EEEEEEEeCCCCCc--cceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4578999999999999999999999999 99999999875544 899999999999999999999999999999999
Q ss_pred EEeccCCchh
Q 037049 694 LQLCHAKKDE 703 (731)
Q Consensus 694 v~~ak~~~~~ 703 (731)
|.+|+++...
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999998754
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=137.20 Aligned_cols=87 Identities=26% Similarity=0.436 Sum_probs=79.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|+.++.+| .++|||||.|.+.++|.+|+..|||..|.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGR---IESIQLMMDSETG--RSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSC---EEEEEEEEETTTT--EEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3456678999999999999999999999999 9999999987554 4899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|+|.+|+++.+
T Consensus 97 ~l~V~~a~~k~d 108 (108)
T 2jrs_A 97 PMKVGHVTERTD 108 (108)
T ss_dssp CCEEECSCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999998753
No 83
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=135.01 Aligned_cols=86 Identities=48% Similarity=0.819 Sum_probs=81.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 998755
No 84
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=138.17 Aligned_cols=80 Identities=29% Similarity=0.383 Sum_probs=76.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++||+.|||..|+|+.|+|.++.+.
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 4799999999999999999999999999999999977 999999999999999999999999999999999999999875
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 93 ~ 93 (102)
T 2cqb_A 93 R 93 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=3.9e-17 Score=148.58 Aligned_cols=124 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCC
Q 037049 532 LALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPD 611 (731)
Q Consensus 532 ~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (731)
++|++|.+...|..|+..|+|....|+.- +.+.. ....
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------------------~~~~ 43 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------------------PPPD 43 (135)
T ss_dssp ------------------------------CCSCC-----------------------------------------SCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------------------CCCC
Confidence 67888899999999999998876665431 11110 0112
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||+|||..+|+++|+++|+.||. |..|+|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~--~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGR---VGDVYIPRDRYTKE--SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSC---CSEEECCCCSSSSS--CCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 335678999999999999999999999999 99999998875544 8999999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.||+++..
T Consensus 119 l~V~~a~~~~~ 129 (135)
T 2lea_A 119 LRVQMARYGRP 129 (135)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999988754
No 86
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=133.35 Aligned_cols=85 Identities=29% Similarity=0.458 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
.+.++|||+|||..+|+++|+++|+.||. |..++|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGK---IDNIVLMKDSDTGR--SKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC---EEEEEEECCSSSCC--CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC---EeEEEEeecCCCCc--eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 35678999999999999999999999999 99999999875544 89999999999999999999999999999999
Q ss_pred EEEeccCCch
Q 037049 693 ILQLCHAKKD 702 (731)
Q Consensus 693 ~v~~ak~~~~ 702 (731)
+|.+|+++..
T Consensus 78 ~V~~a~~~~~ 87 (95)
T 2dnz_A 78 RVGHVTERLD 87 (95)
T ss_dssp EEEESSCCCC
T ss_pred EEEEcccccC
Confidence 9999988764
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=8e-17 Score=130.65 Aligned_cols=74 Identities=27% Similarity=0.481 Sum_probs=71.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
+|||+|||+++++++|+++|++||.|..|.|++++. |+++|||||+|.+.++|++|++ +||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 699999999999999999999999999999999986 9999999999999999999998 9999999999999865
No 88
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=138.36 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=76.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhC------CCccCCceeEE
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFN------KSYLDTCRISC 73 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~------g~~~~g~~i~v 73 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|.+||..|| |..+.|+.|+|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v 95 (111)
T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 95 (111)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence 4799999999999999999999999999999999987 8999999999999999999999999 99999999999
Q ss_pred EeeccCCC
Q 037049 74 EIARKVGD 81 (731)
Q Consensus 74 ~~a~~~~~ 81 (731)
.++.++..
T Consensus 96 ~~a~~~~~ 103 (111)
T 1x4h_A 96 DLAVTRDE 103 (111)
T ss_dssp ECCCCCCC
T ss_pred EECCCCcc
Confidence 99987543
No 89
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=135.50 Aligned_cols=86 Identities=29% Similarity=0.415 Sum_probs=81.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||.|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 90
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=132.93 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..++|+.++.++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGK---VVKVTIMKDKDTRK--SKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSC---EEEEEECCCSSSCC--CTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC---eEEEEEEeCCCCCC--cccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3456778999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEecc
Q 037049 691 ALILQLCH 698 (731)
Q Consensus 691 ~l~v~~ak 698 (731)
+|+|.||+
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999986
No 91
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=136.89 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=75.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeE-EEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCce----eEEE
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEIT-DAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCR----ISCE 74 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~----i~v~ 74 (731)
++|||+|||+++++++|+++|++||.|. +|+|++++. |+++|||||+|.+.++|++||..|||..+.|+. |+|.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~ 89 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLN 89 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEe
Confidence 4899999999999999999999999999 999999986 999999999999999999999999999999999 9999
Q ss_pred eeccC
Q 037049 75 IARKV 79 (731)
Q Consensus 75 ~a~~~ 79 (731)
++++.
T Consensus 90 ~a~~~ 94 (99)
T 2div_A 90 YATYS 94 (99)
T ss_dssp ETTCC
T ss_pred ecCCC
Confidence 99864
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=136.64 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=77.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCc-cCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQ-KGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSY-LDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~-~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++ ||.|.+|+|++++.|+++|||||+|.+.++|.+||..|||.. ++|+.|+|.++.+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 47999999999999999999999 999999999999889999999999999999999999999999 9999999999986
Q ss_pred CCC
Q 037049 79 VGD 81 (731)
Q Consensus 79 ~~~ 81 (731)
...
T Consensus 90 ~~~ 92 (104)
T 2dhg_A 90 KAS 92 (104)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 93
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=133.01 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=77.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGP---IADVSIVYDQQSRR--SRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSC---EEEEEEEECSSSSS--EEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC---eeEEEEEEcCCCCC--cccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4556788999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEeccC
Q 037049 691 ALILQLCHA 699 (731)
Q Consensus 691 ~l~v~~ak~ 699 (731)
+|.|.||+.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999975
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=135.16 Aligned_cols=81 Identities=26% Similarity=0.487 Sum_probs=75.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC--C--CcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--G--KSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g--~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. | +++|||||+|.+.++|++||..|||..+.|+.|+|.++
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4799999999999999999999999999999999875 4 88999999999999999999999999999999999999
Q ss_pred ccCCC
Q 037049 77 RKVGD 81 (731)
Q Consensus 77 ~~~~~ 81 (731)
.+...
T Consensus 86 ~~~~~ 90 (98)
T 2cpf_A 86 ERATK 90 (98)
T ss_dssp SCSSC
T ss_pred cCCCC
Confidence 87543
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=6.4e-16 Score=136.72 Aligned_cols=87 Identities=25% Similarity=0.389 Sum_probs=82.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 037049 375 ARHKKSS 381 (731)
Q Consensus 375 a~~~~~~ 381 (731)
+.++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9987553
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=5.5e-16 Score=137.11 Aligned_cols=87 Identities=32% Similarity=0.450 Sum_probs=82.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEE
Q 037049 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVM 373 (731)
Q Consensus 294 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~ 373 (731)
.....++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037049 374 PARHKKS 380 (731)
Q Consensus 374 ~a~~~~~ 380 (731)
++.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 97
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=136.61 Aligned_cols=85 Identities=26% Similarity=0.398 Sum_probs=80.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+++|||+|||..+++++|+.+|+.||.|..|.|+.++.+|.++|||||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 44567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98653
No 98
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=133.27 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=79.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.++.++. ++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGV---VTEVVMIYDAEKQR--PRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSC---EEEEEECCCTTTCS--CCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEeCCCCCC--CCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 4456789999999999999999999999999 99999999875554 89999999999999999999 999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999998765
No 99
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=133.92 Aligned_cols=82 Identities=27% Similarity=0.415 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSE--------VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ 366 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~ 366 (731)
....++|||+|||..+++++|+++|+.||.|.. |+++.++.+|+++|||||.|.+.++|..|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 556789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeEEEEEecC
Q 037049 367 GRLLHVMPAR 376 (731)
Q Consensus 367 g~~l~V~~a~ 376 (731)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=8.7e-17 Score=135.45 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=73.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFG--NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
.+|||+|||+.+++++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999999899999999999999999999999999999999999999998
Q ss_pred CCC
Q 037049 377 HKK 379 (731)
Q Consensus 377 ~~~ 379 (731)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 101
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=147.09 Aligned_cols=78 Identities=14% Similarity=0.325 Sum_probs=75.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKG--EITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++|+++|+++|+.|| .|.+|+|++|+. |+++|||||+|.+.++|++||..|||..|+|+.|+|.++.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 4799999999999999999999999 999999999987 9999999999999999999999999999999999999997
Q ss_pred c
Q 037049 78 K 78 (731)
Q Consensus 78 ~ 78 (731)
+
T Consensus 136 ~ 136 (156)
T 3n9u_C 136 R 136 (156)
T ss_dssp H
T ss_pred C
Confidence 5
No 102
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=132.69 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=74.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CC-cceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GK-SRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~-~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++||.|..|.|++++. +. ++|||||+|.+.++|.+|+..|||..++|+.|+|.++.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 5899999999999999999999999999999999987 44 899999999999999999999999999999999999986
No 103
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=2.3e-16 Score=132.67 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|++|+ .|||..+.|+.|+|.++++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999999999986 999999999999999999999 8999999999999999986
No 104
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=8.8e-17 Score=138.24 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCC------CCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 614 ESRSLFVKNLNF------KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 614 ~~~~L~V~NLp~------~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
..++|||.|||+ .+++++|+++|+.||. |.+|+|+.++.+|+ ++|||||.|.+.++|.+|+..|||..|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~---i~~v~i~~d~~tg~--~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGK---VVNMEFPIDEATGK--TKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSC---EEEEECCEETTTTE--ECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCC---EeEEEEEEcCCCCc--cceEEEEEECCHHHHHHHHHHhCCccc
Confidence 457899999999 9999999999999999 99999999975554 999999999999999999999999999
Q ss_pred CC-cEEEEEeccCCchh
Q 037049 688 DG-HALILQLCHAKKDE 703 (731)
Q Consensus 688 ~G-r~l~v~~ak~~~~~ 703 (731)
.| |+|.|.+|.+++..
T Consensus 80 ~g~r~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 80 DLKHRLFLYTMKDVERY 96 (100)
T ss_dssp SSSCBCEEEESHHHHHH
T ss_pred CCCeEEEEEECchhhhh
Confidence 99 99999999876543
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6e-16 Score=133.96 Aligned_cols=79 Identities=25% Similarity=0.448 Sum_probs=74.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+||..|||..|+|+.|+|.++.++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 57999999999999999999999999999999998765 89999999999999999999999999999999999998754
No 106
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=3.4e-16 Score=132.49 Aligned_cols=79 Identities=29% Similarity=0.397 Sum_probs=74.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|+|+++ .|+++|||||+|.+.++|++||..|||..+.|+.|+|.++++..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 58999999999999999999999999999999984 68899999999999999999999999999999999999998753
No 107
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=133.31 Aligned_cols=82 Identities=34% Similarity=0.611 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cC
Q 037049 375 AR 376 (731)
Q Consensus 375 a~ 376 (731)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 108
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=135.43 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=81.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 109
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=3.6e-16 Score=130.83 Aligned_cols=75 Identities=27% Similarity=0.457 Sum_probs=71.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|.+||+ +++..++|+.|+|.+|
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999999999987 9999999999999999999996 6888999999999875
No 110
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=136.10 Aligned_cols=86 Identities=34% Similarity=0.445 Sum_probs=81.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987644
No 111
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=136.88 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=75.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 4799999999999999999999999999999999986 999999999999999999999999999999999999999863
No 112
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=138.78 Aligned_cols=81 Identities=30% Similarity=0.480 Sum_probs=76.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|..|+|++++. ++++|||||+|.+.++|++||..+++ .|.|+.|+|.++.+.
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 5799999999999999999999999999999999987 99999999999999999999999998 899999999999875
Q ss_pred CCC
Q 037049 80 GDP 82 (731)
Q Consensus 80 ~~~ 82 (731)
..+
T Consensus 97 ~~~ 99 (116)
T 2cqd_A 97 AKP 99 (116)
T ss_dssp CCC
T ss_pred CCc
Confidence 443
No 113
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=136.27 Aligned_cols=78 Identities=31% Similarity=0.441 Sum_probs=75.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++.|+++|||||+|.+.++|++||..|||..|.|+.|+|.++.+
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 479999999999999999999999999999999998899999999999999999999999999999999999999875
No 114
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-16 Score=130.73 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=72.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
|+|||+|||+++++++|+++|++||.|..|.|++++. |+++|||||+|.+.++|.+|++.++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 6899999999999999999999999999999999987 9999999999999999999999888 9999999999986
No 115
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=7.4e-16 Score=136.31 Aligned_cols=88 Identities=25% Similarity=0.404 Sum_probs=80.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.++.++. ++|||||+|.+.++|.+||..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGR---ISDARVVKDMATGK--SKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSC---EEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEEcCCCCC--cceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4556788999999999999999999999999 99999999865544 899999999999999999999999999999
Q ss_pred EEEEEeccCCchh
Q 037049 691 ALILQLCHAKKDE 703 (731)
Q Consensus 691 ~l~v~~ak~~~~~ 703 (731)
+|.|.||+++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999887643
No 116
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=3.8e-16 Score=147.58 Aligned_cols=143 Identities=15% Similarity=0.230 Sum_probs=79.4
Q ss_pred EEeCCHHHHHHHHHhcCCCccC--CceEEEEeCCCCccccCCCCcCCCCCcccccchhhHhhhHHhhhhcCCCCCCCCCC
Q 037049 535 VVFLEPVEAAAAFKGLAYKRYK--GVPLYLEWAPSDVLSQSSTSKGNQKNDAVVGEHDAKRALLEQQLEGVTDADIDPDR 612 (731)
Q Consensus 535 V~F~~~e~A~~Ai~~lng~~~~--gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (731)
..|...++|..|+..|++.... |+.+...++.......... ...+ ............
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~----------------~~~s-----~~~~~~~~~~~~ 69 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYER----------------VRNE-----DDDELEPGPQRS 69 (165)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccc----------------cccC-----CCCCCCCCCCCC
Confidence 6889999999999999987766 6666665543211000000 0000 000001122234
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
.++++|||.|||..+|+++|+++|..||. |..|.|+.+..+|. ++|||||.|.+.++|.+||..|||..|.|++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGE---IKNIHLNLDRRTGF--SKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSC---EEEEEEEECTTTSS--EEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEEEEecCCCCc--EeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 56778999999999999999999999999 99999999875554 89999999999999999999999999999999
Q ss_pred EEEeccCCchh
Q 037049 693 ILQLCHAKKDE 703 (731)
Q Consensus 693 ~v~~ak~~~~~ 703 (731)
.|.||+++...
T Consensus 145 ~V~~a~~~~~~ 155 (165)
T 1rk8_A 145 QVDWCFVKGPK 155 (165)
T ss_dssp EEEESEECC--
T ss_pred EEEEecCCCCC
Confidence 99999887653
No 117
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=134.83 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..|+|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGP---VVNTHMPKDRVTGQ--HQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSC---EEEEECCBCSSSCS--BCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCCCCc--CCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4556788999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999988754
No 118
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=135.07 Aligned_cols=87 Identities=26% Similarity=0.473 Sum_probs=79.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQ---ISEVVVVKDRETQR--SRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSC---CCEEEECCCSSSCS--CCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC---eEEEEEEeCCCCCC--cccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4556788999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 83 ~l~v~~a~~~~~ 94 (102)
T 1x5s_A 83 QIRVDQAGKSSD 94 (102)
T ss_dssp CCEEEEEECCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988754
No 119
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=4.3e-16 Score=135.92 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=74.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+.+++++|+++|+.||.|..|+|++++.|+++|||||+|.+.++|++||..|||..+.|+.|+|.++.
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 37999999999999999999999999999999999989999999999999999999999999999999999999875
No 120
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=133.50 Aligned_cols=84 Identities=32% Similarity=0.435 Sum_probs=79.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEV-HIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i-~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
.+++|||+|||+.+++++|+.+|+.||.|..| +|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037049 376 RHKKS 380 (731)
Q Consensus 376 ~~~~~ 380 (731)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 121
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6e-16 Score=135.98 Aligned_cols=86 Identities=30% Similarity=0.522 Sum_probs=81.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC------CcccCCe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD------NSIFQGR 368 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~------~~~~~g~ 368 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|++++.+|.++|||||.|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567799999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEecCCCCC
Q 037049 369 LLHVMPARHKKS 380 (731)
Q Consensus 369 ~l~V~~a~~~~~ 380 (731)
.|.|.++.++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999997654
No 122
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=134.67 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC--CCccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ--GTILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln--g~~i~ 688 (731)
...+.++|||+|||+.+|+++|+++|++||. |.+|+|+. .||||||+|.+.++|.+|+..|+ +..|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~---V~~v~i~~--------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGK---VTNLLMLK--------GKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCC---EEEEEEET--------TTTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEc--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 3456788999999999999999999999999 99999986 37999999999999999999886 47899
Q ss_pred CcEEEEEeccCCchh
Q 037049 689 GHALILQLCHAKKDE 703 (731)
Q Consensus 689 Gr~l~v~~ak~~~~~ 703 (731)
||+|.|.||+++...
T Consensus 81 Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 81 GQPIYIQFSNHKELK 95 (105)
T ss_dssp TEECCBCCCSSSSCC
T ss_pred CEEEEEEEcCCCCCC
Confidence 999999999887653
No 123
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=134.82 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=79.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGR---VGDVYIPREPHTKA--PRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSC---EEEEECCBCSSSCS--BCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEeCCCCCC--CCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4456788999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dnm_A 84 ELRVQVARYGRR 95 (103)
T ss_dssp CCEEEECSSCCS
T ss_pred EEEEEECCcCCC
Confidence 999999987654
No 124
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-16 Score=134.26 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=73.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+||..|||..+.|+.|+|.++++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 47999999999999999999999999999999998654 6899999999999999999999999999999999999864
No 125
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=9.2e-16 Score=128.29 Aligned_cols=80 Identities=26% Similarity=0.572 Sum_probs=75.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||.|.+.++|.+|+ .+++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 456679999999999999999999999999999999999989999999999999999999999 5688899999999997
Q ss_pred c
Q 037049 375 A 375 (731)
Q Consensus 375 a 375 (731)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 126
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=9.3e-16 Score=133.28 Aligned_cols=84 Identities=27% Similarity=0.322 Sum_probs=79.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC---eEEEE
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG---RLLHV 372 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g---~~l~V 372 (731)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||.|.+.++|.+|+..|||..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456799999999999999999999999999999999998 89999999999999999999999999999998 99999
Q ss_pred EecCCCCC
Q 037049 373 MPARHKKS 380 (731)
Q Consensus 373 ~~a~~~~~ 380 (731)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 127
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=4.6e-16 Score=134.65 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++|| |..|+|++++. |+++|||||+|.+.++|++|| .|||..|.|+.|+|.++.+.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 3799999999999999999999997 99999999987 999999999999999999999 79999999999999999875
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 94 ~ 94 (103)
T 2dng_A 94 K 94 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=135.17 Aligned_cols=86 Identities=26% Similarity=0.478 Sum_probs=81.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 997654
No 129
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.3e-16 Score=134.10 Aligned_cols=87 Identities=23% Similarity=0.473 Sum_probs=79.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeee-cCCCCcccccEEEEEeCCHHHHHHHHHHh-CCCccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKH-LKNGKNVSMGFGFIEFDSVETATNVCRDL-QGTILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~-~~~~~~~~kG~afV~F~s~e~A~~Ai~~l-ng~~i~ 688 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.+ ..++. ++|||||+|.+.++|.+|+..| ||..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGE---LKTVRLPKKMTGTGA--HRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSC---EEEEECCCCCSSSCS--SCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCC---eEEEEEecCCCCCCC--cCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 4556788999999999999999999999999 999999988 54444 8999999999999999999999 999999
Q ss_pred CcEEEEEeccCCch
Q 037049 689 GHALILQLCHAKKD 702 (731)
Q Consensus 689 Gr~l~v~~ak~~~~ 702 (731)
|++|.|.||+++..
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999998765
No 130
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=132.32 Aligned_cols=85 Identities=31% Similarity=0.489 Sum_probs=79.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCC---CCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKD---TKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~---~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
.+.++|||+|||+.+++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457999999999999999999999999999999999886 5689999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 037049 373 MPARHKKS 380 (731)
Q Consensus 373 ~~a~~~~~ 380 (731)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 131
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=137.42 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=75.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEIT--------DAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i 71 (731)
++|||+|||+++|+++|+++|++||.|. .|+|++++. |+++|||||+|.+.++|++||..|||..|.|+.|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 95 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEE
Confidence 5899999999999999999999999999 699999966 9999999999999999999999999999999999
Q ss_pred EEEeeccCC
Q 037049 72 SCEIARKVG 80 (731)
Q Consensus 72 ~v~~a~~~~ 80 (731)
+|.++++..
T Consensus 96 ~V~~a~~~~ 104 (113)
T 2cpe_A 96 KVSLARKKP 104 (113)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 132
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.1e-16 Score=132.81 Aligned_cols=85 Identities=38% Similarity=0.534 Sum_probs=78.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.+ ++ .++|||||.|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~--~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGT---ITSAKVMME--GG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSC---EEEEEEEEC--SS--SEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEcC--CC--CcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4557789999999999999999999999999 999999987 33 3899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2d9p_A 84 PLYVALAQRKEE 95 (103)
T ss_dssp BCEEEECSSCCC
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 133
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=6.9e-17 Score=136.16 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=73.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.+ |.+|+..|||..++|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4899999999999999999999999999999999987 999999999999999 99999999999999999999999875
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 134
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4.6e-16 Score=126.40 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=72.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
...+..|||+||++.+|+++|+++|.+||+|.++++..++|||||+|.+.++|.+|++.|||..+.|++|.|.+|.
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999995
No 135
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=4.5e-16 Score=140.16 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=76.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+.+|++||.|..|.|+.++. |.++|||||+|.+.++|.+||..|||..|.|+.|+|.++.+.
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 3799999999999999999999999999999999986 999999999999999999999999999999999999999875
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 103 ~~ 104 (126)
T 3ex7_B 103 GP 104 (126)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 136
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=130.63 Aligned_cols=77 Identities=21% Similarity=0.410 Sum_probs=73.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|+.| .|..|+|+++..|+++|||||+|.+.++|++||. |||..++|+.|+|.++.++
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 479999999999999999999999 9999999999669999999999999999999999 9999999999999999864
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=134.58 Aligned_cols=86 Identities=27% Similarity=0.484 Sum_probs=80.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeee-CCCCCceeEEEEEecCHHHHHHHHHHc-CCcccCCeEEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVD-KDTKRSKGIAYVLYAIPESASRAIEVL-DNSIFQGRLLHV 372 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d-~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~~~g~~l~V 372 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +.++.++|||||.|.+.++|.+|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999998 778999999999999999999999999 999999999999
Q ss_pred EecCCCCC
Q 037049 373 MPARHKKS 380 (731)
Q Consensus 373 ~~a~~~~~ 380 (731)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99997654
No 138
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=4.9e-16 Score=136.26 Aligned_cols=85 Identities=32% Similarity=0.434 Sum_probs=80.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98654
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.9e-16 Score=156.15 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFG--NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
..++|||+|||+.+|+++|+++|+.|| .|..|+|++|+.+|+++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 667999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 974
No 140
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=2.5e-16 Score=140.08 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=73.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|++||+.|||..++|+.|+|.+++
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 4799999999999999999999999999999999977 9999999999999999999999999999999999999874
No 141
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.5e-16 Score=135.50 Aligned_cols=87 Identities=20% Similarity=0.408 Sum_probs=79.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...++++|||+|||..+|+++|+++|+.||. |..|+|+.+..+|. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGE---IKNIHLNLDRRTGF--SKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSC---EEEEECCBCTTTSS--BCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEecCCCCC--cceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4456788999999999999999999999999 99999998875544 899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 999999987643
No 142
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=135.56 Aligned_cols=91 Identities=29% Similarity=0.502 Sum_probs=81.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
+.++|||+|||..+|+++|+++|+.||. |..++|+.++.+| .++|||||+|.+.++|.+|+..|||..|.|++|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGP---VVSFRLVYDRETG--KPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSC---CSEEEEEEETTTT--EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCC---eeEEEEEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4578999999999999999999999999 9999999987554 4899999999999999999999999999999999
Q ss_pred EEeccCCchhhHHhhh
Q 037049 694 LQLCHAKKDEQVVKKA 709 (731)
Q Consensus 694 v~~ak~~~~~~~~~~~ 709 (731)
|.+|+++......+..
T Consensus 82 v~~a~~~~~~~~~~~~ 97 (104)
T 1p1t_A 82 VDNAASEKNKEELKSL 97 (104)
T ss_dssp EEETTCTTHHHHHHHH
T ss_pred EEeCCCccchhhhccC
Confidence 9999998776544443
No 143
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=135.99 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=73.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK--DGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|+.|| |.+|+|++++ .|+++|||||+|.+.++|.+|| .|||..++|+.|+|.++++
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 5899999999999999999999999 9999999998 3999999999999999999999 7999999999999999986
Q ss_pred C
Q 037049 79 V 79 (731)
Q Consensus 79 ~ 79 (731)
+
T Consensus 98 ~ 98 (100)
T 2j76_E 98 A 98 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 144
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=130.17 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=73.7
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCc--cCCceEEEEeCCC
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKR--YKGVPLYLEWAPS 567 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~--~~gr~l~v~~a~~ 567 (731)
...++++|||+|||+.+++++|+++|++||.|.++.+.+.||+|||+|.+.++|.+|+..|+|.. +.|++|+|.|+..
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34567899999999999999999999999999999999999999999999999999999999886 7899999999965
Q ss_pred C
Q 037049 568 D 568 (731)
Q Consensus 568 ~ 568 (731)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 4
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=130.97 Aligned_cols=82 Identities=29% Similarity=0.407 Sum_probs=77.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||.|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4566799999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=6.2e-16 Score=146.15 Aligned_cols=86 Identities=31% Similarity=0.431 Sum_probs=80.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||.|.+.++|..||..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987543
No 147
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=129.40 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCC-ceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKR-SKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~-~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
..++|||+|||+.+++++|+++|+.||.|..|.++.+..++. ++|||||.|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 456999999999999999999999999999999999987666 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 037049 376 RHKK 379 (731)
Q Consensus 376 ~~~~ 379 (731)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=132.71 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=80.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCee-EEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeE----
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVS-EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRL---- 369 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~---- 369 (731)
....++|||+|||+.+++++|+++|+.||.|. .|+|++++.+|.++|||||.|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 037049 370 LHVMPARHKK 379 (731)
Q Consensus 370 l~V~~a~~~~ 379 (731)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 149
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=9.6e-16 Score=128.77 Aligned_cols=81 Identities=37% Similarity=0.675 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3569999999999999999999999999999999999889999999999999999999999 999999999999999998
Q ss_pred CC
Q 037049 377 HK 378 (731)
Q Consensus 377 ~~ 378 (731)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 150
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=135.23 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=73.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++||.|..+.++.++. |+++|||||+|.+.++|++||+.|||..|.|+.|+|.++.+
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 4799999999999999999999999999888888876 99999999999999999999999999999999999999875
No 151
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=131.09 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.+.. . ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~--~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGP---CKSCKMITEHT--S--NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSC---EEEEEEECCCC--S--SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCC---EeEEEEEecCC--C--CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 4556788999999999999999999999999 99999999852 2 689999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2cqi_A 84 EVKVNWATTPSS 95 (103)
T ss_dssp EEEEEECCCTTC
T ss_pred eEEEEECCCCcc
Confidence 999999988654
No 152
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=9.4e-16 Score=137.59 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=76.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|+|++++.|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+..
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999998744
No 153
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=136.46 Aligned_cols=99 Identities=19% Similarity=0.333 Sum_probs=85.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQ 695 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~ 695 (731)
++|||+|||..+|+++|+++|+.||. |..++|+.+ ++|||||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP---LRTVWIARN-------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC---CSEEEEESS-------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEeeC-------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 47999999999999999999999999 999999875 68999999999999999999999999999999999
Q ss_pred eccCCchhhHHhh-hccCCCCceEEEeecc
Q 037049 696 LCHAKKDEQVVKK-AEKDKSSTKLLVRNVA 724 (731)
Q Consensus 696 ~ak~~~~~~~~~~-~~~~~~~~~~~~~n~~ 724 (731)
+|+++........ ........+|+|.||+
T Consensus 71 ~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 71 LSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp ESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred EccCCCCcccCCCCCccccCCCceecCCCC
Confidence 9988764321111 1233458899999986
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-16 Score=133.58 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=69.2
Q ss_pred CeEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCC--ccCCceeEEEeec
Q 037049 1 SRICVKNLPK-YVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKS--YLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~--~~~g~~i~v~~a~ 77 (731)
++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|..||+.||+. .+.|++|+|.+++
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 4799999999 9999999999999999999999987 689999999999999999999865 4899999999998
Q ss_pred cCC
Q 037049 78 KVG 80 (731)
Q Consensus 78 ~~~ 80 (731)
+..
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 643
No 155
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=130.53 Aligned_cols=85 Identities=29% Similarity=0.528 Sum_probs=78.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.+.. . ++|||||.|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~--~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGK---ILDVEIIFNER--G--SKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSC---EEEEEEECCTT--T--TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCC--C--CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4556788999999999999999999999999 99999998752 2 899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999998754
No 156
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.7e-16 Score=137.24 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=75.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|+.||.|..|+|++++. |+++|||||+|.+.++|++||.. ++..|+|+.|+|.++.++
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 5799999999999999999999999999999999977 99999999999999999999996 999999999999999976
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 107 ~~ 108 (116)
T 1x4b_A 107 EE 108 (116)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 157
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-16 Score=134.56 Aligned_cols=84 Identities=18% Similarity=0.363 Sum_probs=76.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||+|||+.+|+++|+++|+.||. |.+|+|+.++. +.++|||||+|.+.++|.+|+. ++|..|.|++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~---v~~v~i~~d~~---g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQ---VLNIQMRRTLH---KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSC---EEEEEEECCCT---TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCC---EEEEEEEECCC---CCCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 445678999999999999999999999999 99999999873 4599999999999999999999 8999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.+++.-.+
T Consensus 81 l~V~~~~~~~~ 91 (103)
T 1s79_A 81 LLILFKDDYFA 91 (103)
T ss_dssp CEEEEHHHHHH
T ss_pred EEEEEchHHHH
Confidence 99999876543
No 158
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=2.5e-16 Score=134.14 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=73.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++++++|+++|++||.|..+.++.++. |+++|||||+|.+.++|++||..|||..+.|++|+|.++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4799999999999999999999999999999998877 8999999999999999999999999999999999999875
No 159
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=8.7e-16 Score=136.53 Aligned_cols=84 Identities=31% Similarity=0.440 Sum_probs=78.7
Q ss_pred cccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 293 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
......++|||+|||+.+++++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecC
Q 037049 373 MPAR 376 (731)
Q Consensus 373 ~~a~ 376 (731)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 160
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=133.47 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=72.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|+.||. ..|+|++++.|+++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.+..
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCC
Confidence 47999999999999999999999995 49999999989999999999999999999996 89999999999999888643
No 161
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=130.14 Aligned_cols=83 Identities=14% Similarity=0.296 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 612 RVESRSLFVKNLNFKTCDENLR----KHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~----~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
....++|||+|||..+|+++|+ ++|+.||. |.+|+|+.+..+ +|||||+|.+.++|.+|+..|||..|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~---v~~v~i~~~~~~-----rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGK---VKSVELSPHTDY-----QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC---EEEEEECSCCST-----TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCc---EEEEEEEeCCCC-----CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3456789999999999999999 99999999 999999987522 88999999999999999999999999
Q ss_pred CCcEEEEEeccCCch
Q 037049 688 DGHALILQLCHAKKD 702 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~~ 702 (731)
.|++|+|.+|+++..
T Consensus 78 ~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 78 GSKKILVSLATGASG 92 (96)
T ss_dssp TTEEEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCC
Confidence 999999999987743
No 162
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=6.4e-16 Score=134.57 Aligned_cols=86 Identities=28% Similarity=0.448 Sum_probs=80.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCccc---CCeEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIF---QGRLLH 371 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~---~g~~l~ 371 (731)
....++|||+|||..+++++|+++|+.||.|..|+|+.++.+|.++|||||.|.+.++|.+|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45667999999999999999999999999999999999998899999999999999999999999999887 899999
Q ss_pred EEecCCCCC
Q 037049 372 VMPARHKKS 380 (731)
Q Consensus 372 V~~a~~~~~ 380 (731)
|.++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 163
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=131.22 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=78.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.|| |..|.|+.++.+|.++|||||.|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 999999999989999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.8e-16 Score=133.87 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC--CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|+.|| |..|+|++++. |+++|||||+|.+.++|++|| .|||..|.|+.|+|.++.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 3799999999999999999999999 99999999986 899999999999999999999 8999999999999999987
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
+.
T Consensus 94 ~~ 95 (104)
T 1wi8_A 94 AQ 95 (104)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 165
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=137.68 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=74.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++|| .|||..|.|+.|+|.++.+.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 4799999999999999999999999999999999988 999999999999999999999 89999999999999999863
No 166
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5e-16 Score=135.78 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=73.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||.++++++|+++|++||.|..|+|++++. .++|||||+|.+.++|++|+..|||..++|+.|+|.+++++
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 5799999999999999999999999999999999864 48999999999999999999999999999999999999864
No 167
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=129.38 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHh--CCCccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL--QGTILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~l--ng~~i~ 688 (731)
...++++|||+|||..+|+++|+++|++||. |..|.|+. .||||||+|.+.++|.+|+..| ++..|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~---v~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGK---VTNILMLK--------GKNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSC---EEEEEEET--------TTTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEC--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 4557789999999999999999999999999 99998875 3899999999999999999987 477899
Q ss_pred CcEEEEEeccCCch
Q 037049 689 GHALILQLCHAKKD 702 (731)
Q Consensus 689 Gr~l~v~~ak~~~~ 702 (731)
|++|.|.||+++..
T Consensus 80 Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 80 NQPIYIQYSNHKEL 93 (101)
T ss_dssp TEECEEEECSCSSC
T ss_pred CcEEEEEEcCcccC
Confidence 99999999998754
No 168
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=135.83 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=75.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++||.. ++..|.|+.|+|.++.++
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 4799999999999999999999999999999999977 99999999999999999999997 999999999999999875
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 96 ~ 96 (105)
T 2dh8_A 96 G 96 (105)
T ss_dssp S
T ss_pred C
Confidence 4
No 169
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=9.5e-16 Score=133.45 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=79.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc---
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL--- 687 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i--- 687 (731)
...+.++|||+|||..+|+++|+++|+.||. |..|+|+.++.++. ++|||||.|.+.++|.+|+..|||..+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGK---IYELTVLKDRFTGM--HKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSC---CCEEECCCCSSSCS--CCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCCCCC--cceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 4456788999999999999999999999999 99999999875554 899999999999999999999999998
Q ss_pred CCcEEEEEeccCCch
Q 037049 688 DGHALILQLCHAKKD 702 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~~ 702 (731)
.|++|.|.+|+++..
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 999999999988754
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=3.3e-16 Score=141.73 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=73.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE---ITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++|+++|+++|+.||. |..|+|++++.|+++|||||+|.+.++|++||+ +||..|+|+.|+|.++.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 47999999999999999999999999 899999999889999999999999999999999 99999999999999886
Q ss_pred c
Q 037049 78 K 78 (731)
Q Consensus 78 ~ 78 (731)
+
T Consensus 124 ~ 124 (136)
T 2hgl_A 124 R 124 (136)
T ss_dssp H
T ss_pred h
Confidence 4
No 171
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-16 Score=133.55 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITD-AKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|.. |+|+++..|+++|||||+|.+.++|++||.. |+..++|+.|+|.++.+.
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 47999999999999999999999999987 9999996799999999999999999999996 999999999999988753
No 172
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=8.4e-16 Score=134.31 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=73.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|+.||.|..|+|++++. |+++|||||+|.+.++|.+||..+ +..++|+.|+|.++.++
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence 4799999999999999999999999999999999987 999999999999999999999965 68899999999999864
No 173
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=9.3e-16 Score=138.19 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=79.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.++.++. ++|||||+|.+.++|.+||..|||..|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~--~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGP---IADVSIVYDQQSRR--SRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSC---EEEEEEECCSSSSC--CCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4567788999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 037049 691 ALILQLCHAKK 701 (731)
Q Consensus 691 ~l~v~~ak~~~ 701 (731)
+|.|.||+++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999998864
No 174
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=134.24 Aligned_cols=85 Identities=31% Similarity=0.469 Sum_probs=79.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 986544
No 175
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=130.85 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCC--ccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGT--ILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~--~i~ 688 (731)
...+.++|||+|||..+|+++|+++|++||. |..|.|+. .||||||+|.+.++|.+|+..|++. .|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~---V~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGT---ICYVMMMP--------FKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSC---EEEEEEET--------TTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC---EEEEEEEC--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 4557789999999999999999999999999 99998875 4899999999999999999998764 599
Q ss_pred CcEEEEEeccCCch
Q 037049 689 GHALILQLCHAKKD 702 (731)
Q Consensus 689 Gr~l~v~~ak~~~~ 702 (731)
|++|.|.||+.+..
T Consensus 80 Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 80 GQQAFFNYSTSKRI 93 (104)
T ss_dssp SSBCEEEECSSSSC
T ss_pred CEEEEEEEccCccc
Confidence 99999999988754
No 176
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=7.5e-16 Score=138.81 Aligned_cols=85 Identities=33% Similarity=0.443 Sum_probs=80.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98754
No 177
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-16 Score=131.95 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=72.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++++++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++|+..|||..+.|+.|++.++.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 5899999999999999999999999999999999977 9999999999999999999999999999999998876543
No 178
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=4.2e-16 Score=138.27 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=73.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE---ITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++|+++|+++|+.||. |..|+|++++.|+++|||||+|.+.++|++||. +||..|+|+.|+|.++.
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 47999999999999999999999999 899999999889999999999999999999999 99999999999999886
Q ss_pred c
Q 037049 78 K 78 (731)
Q Consensus 78 ~ 78 (731)
+
T Consensus 97 ~ 97 (118)
T 2db1_A 97 R 97 (118)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=132.80 Aligned_cols=85 Identities=24% Similarity=0.286 Sum_probs=80.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcc-cCCeEEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSK-FGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSI-FQGRLLHV 372 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~-~~g~~l~V 372 (731)
....++|||+|||+.+++++|+++|+. ||.|..|.|+.++ +|.++|||||.|.+.++|.+|+..||+.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345679999999999999999999999 9999999999999 99999999999999999999999999999 99999999
Q ss_pred EecCCCCC
Q 037049 373 MPARHKKS 380 (731)
Q Consensus 373 ~~a~~~~~ 380 (731)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99987654
No 180
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=134.29 Aligned_cols=79 Identities=22% Similarity=0.489 Sum_probs=74.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--------CCceeE
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL--------DTCRIS 72 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~--------~g~~i~ 72 (731)
++|||+|||+++++++|+++|++||.|..|+|++++.|+++|||||+|.+.++|.+||..|||..+ .+++|+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~ 105 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL 105 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCcee
Confidence 589999999999999999999999999999999998899999999999999999999999999999 578899
Q ss_pred EEeeccC
Q 037049 73 CEIARKV 79 (731)
Q Consensus 73 v~~a~~~ 79 (731)
|.++.|.
T Consensus 106 v~~a~p~ 112 (114)
T 1x5o_A 106 CKFSGPS 112 (114)
T ss_dssp EEECCCS
T ss_pred EEccCCC
Confidence 9999863
No 181
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.9e-16 Score=131.55 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeCCCC-CCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCC--cc
Q 037049 611 DRVESRSLFVKNLNF-KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGT--IL 687 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~-~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~--~i 687 (731)
...++++|||+|||+ .+|+++|+++|.+||. |.+|+|++ .+|||||+|.+.++|.+|+..||+. .|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~---V~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGV---ISNHLILN--------KINEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSC---EEEEEECS--------SSSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCC---EEEEEEEc--------CCCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 344778999999999 9999999999999999 99999986 3689999999999999999999864 59
Q ss_pred CCcEEEEEeccCCc
Q 037049 688 DGHALILQLCHAKK 701 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~ 701 (731)
.||+|.|.||+.+.
T Consensus 80 ~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 80 FGKPVRVHLSQKYK 93 (102)
T ss_dssp TTEECEEEEECCCT
T ss_pred CCcEEEEEECCCCC
Confidence 99999999998653
No 182
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.4e-16 Score=134.23 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=74.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEe-ecCC-CCcceEEEEEecCHHHHHHHHHHhC--CCccCCceeEEEe
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE-ITDAKLM-RTKD-GKSRQFAFIGFRTEQEAEEAIKYFN--KSYLDTCRISCEI 75 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~-g~~~g~afV~f~~~~~a~~ai~~~~--g~~~~g~~i~v~~ 75 (731)
++|||+|||+++++++|+++|++||. |.+|.|+ .++. |+++|||||+|.+.++|.+||..|+ +..+.|+.|+|.+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~ 88 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 88 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence 47999999999999999999999998 9999998 6766 8999999999999999999999996 5899999999999
Q ss_pred eccCCC
Q 037049 76 ARKVGD 81 (731)
Q Consensus 76 a~~~~~ 81 (731)
+.+...
T Consensus 89 a~~~~~ 94 (109)
T 2dis_A 89 AEPEID 94 (109)
T ss_dssp SCSSCS
T ss_pred cCCCCC
Confidence 997643
No 183
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=134.57 Aligned_cols=86 Identities=36% Similarity=0.506 Sum_probs=80.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccC
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVS--------EVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQ 366 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~ 366 (731)
....++|||+|||+.+++++|+++|+.||.|. .|+|+.++.+|.++|||||.|.+.++|.+||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCC
Q 037049 367 GRLLHVMPARHKKS 380 (731)
Q Consensus 367 g~~l~V~~a~~~~~ 380 (731)
|+.|.|.++.++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999997654
No 184
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=133.58 Aligned_cols=84 Identities=27% Similarity=0.513 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037049 376 RHKKS 380 (731)
Q Consensus 376 ~~~~~ 380 (731)
.+...
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 185
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=133.53 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=71.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
+|||+|||+++|+++|+++|+.| .|.+|+|++++.|+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+.+
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 79999999999999999999999 899999999988999999999999999999999 5999999999999988764
No 186
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=128.53 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=67.3
Q ss_pred CeEEEeCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc-eeEE
Q 037049 1 SRICVKNLPKYV------TEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTC-RISC 73 (731)
Q Consensus 1 s~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~-~i~v 73 (731)
++|||+|||+.+ ++++|+++|++||.|.+|.|+ ...|+++|||||+|.+.++|.+||..|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 789999999999999999988 34589999999999999999999999999999999 8876
No 187
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.7e-16 Score=131.22 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=74.0
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcC--CCccCCceEEEEeCCC
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLA--YKRYKGVPLYLEWAPS 567 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~ln--g~~~~gr~l~v~~a~~ 567 (731)
...+.++|||+|||+.+++++|+++|++||.|.+|.|.+.+|||||+|.+.++|..|+..|+ +..|.|++|.|.||..
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 45678899999999999999999999999999999999999999999999999999999886 4789999999999976
Q ss_pred Cc
Q 037049 568 DV 569 (731)
Q Consensus 568 ~~ 569 (731)
+.
T Consensus 92 ~~ 93 (105)
T 1sjq_A 92 KE 93 (105)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 188
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=132.68 Aligned_cols=78 Identities=29% Similarity=0.427 Sum_probs=72.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|++||.|..|+|+.+ ++++|||||+|.+.++|++||+.||+..|.|+.|+|.++++..
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 47999999999999999999999999999999665 5689999999999999999999999999999999999998754
No 189
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=133.20 Aligned_cols=87 Identities=22% Similarity=0.396 Sum_probs=76.5
Q ss_pred cccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 293 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
......++|||+|||+.+++++|+++|+.||.|..|+|+.++.+|.++|||||.|.+.++|.+|+..+ +..|.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34566789999999999999999999999999999999999988999999999999999999999765 69999999999
Q ss_pred EecCCCCC
Q 037049 373 MPARHKKS 380 (731)
Q Consensus 373 ~~a~~~~~ 380 (731)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987643
No 190
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=133.54 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC--CCccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ--GTILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln--g~~i~ 688 (731)
...++++|||+|||+.+|+++|+++|++||. |.+|+|+. .||||||+|.+.++|.+|+..|+ +..|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~---V~~v~i~~--------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGK---VTNLLMLK--------GKNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSC---CCEEEEEG--------GGTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 4557789999999999999999999999999 99999986 37999999999999999999987 47899
Q ss_pred CcEEEEEeccCCch
Q 037049 689 GHALILQLCHAKKD 702 (731)
Q Consensus 689 Gr~l~v~~ak~~~~ 702 (731)
|++|.|.||+++..
T Consensus 96 Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 96 GQPIYIQFSNHKEL 109 (119)
T ss_dssp TBCCEEEECSSSSC
T ss_pred CeEEEEEEccCCCC
Confidence 99999999988764
No 191
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=2e-15 Score=131.58 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=77.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||.|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cC
Q 037049 375 AR 376 (731)
Q Consensus 375 a~ 376 (731)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 192
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=133.25 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=78.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHH---HHhccccCcccEEEEEEeeecCCC-CcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLR---KHFGEHIKEGRILSVKVKKHLKNG-KNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~---~~F~~~G~~~~I~~vki~~~~~~~-~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
...+.++|||.|||..+|+++|+ ++|..||. |..|+|+.+..++ .+.++|||||+|.+.++|.+||..|||..
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~---i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGK---IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSC---EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCC---EEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 34466789999999999999999 99999999 9999999886432 23478999999999999999999999999
Q ss_pred cCCcEEEEEeccCCc
Q 037049 687 LDGHALILQLCHAKK 701 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~ 701 (731)
|.|++|.|.||+++.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999999885
No 193
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=6.6e-16 Score=134.08 Aligned_cols=78 Identities=24% Similarity=0.399 Sum_probs=72.6
Q ss_pred CeEEEeCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc-eeEE
Q 037049 1 SRICVKNLPKYV------TEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTC-RISC 73 (731)
Q Consensus 1 s~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~-~i~v 73 (731)
++|||+|||+.+ |+++|+++|++||.|.+|.|+ ...|+++|||||+|.+.++|.+||..|||..+.|+ .|+|
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 579999999999 889999999999999999998 34589999999999999999999999999999998 9999
Q ss_pred EeeccC
Q 037049 74 EIARKV 79 (731)
Q Consensus 74 ~~a~~~ 79 (731)
.++...
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 998753
No 194
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1.4e-15 Score=136.56 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=74.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|| .|||..|+|+.|+|.++++.
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999976 999999999999999999999 69999999999999999864
No 195
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=131.66 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=78.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCC-CCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDT-KRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4557999999999999999999999999 999999999877 899999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 998654
No 196
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=140.93 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=77.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFG--NVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
..++|||+|||+.+++++|+++|+.|| .|.+|+|+.|+.+|+++|||||.|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 974
No 197
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.4e-16 Score=135.65 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=74.4
Q ss_pred CeEEEeCCCCCCCHHHHH---HHhhcCCCeEEEEEeecCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 037049 1 SRICVKNLPKYVTEDRLR---DFFSQKGEITDAKLMRTKD----GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISC 73 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v 73 (731)
++|||+|||+++++++|+ ++|++||.|.+|.|++++. ++++|||||+|.+.++|++||+.|||..|+|+.|+|
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 95 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEE
Confidence 479999999999999999 9999999999999998875 356799999999999999999999999999999999
Q ss_pred EeeccCC
Q 037049 74 EIARKVG 80 (731)
Q Consensus 74 ~~a~~~~ 80 (731)
.++.++.
T Consensus 96 ~~a~~k~ 102 (111)
T 2cpi_A 96 SLGTTKY 102 (111)
T ss_dssp ESCCCCS
T ss_pred Eeccccc
Confidence 9998753
No 198
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=132.84 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=69.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNK--SYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g--~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|++ ..+.|++|+|.++++
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 37999999999999999999999999999999987 79999999999999999998874 689999999999986
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
+.
T Consensus 107 k~ 108 (119)
T 2ad9_A 107 KE 108 (119)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 199
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=2.1e-15 Score=127.58 Aligned_cols=84 Identities=29% Similarity=0.478 Sum_probs=77.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||+|||..+|+++|+++|..||. |..++|+.+ ++ .++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~--~g--~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGH---VLYADIKME--NG--KSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSC---EEEEEEEES--SS--CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEcc--CC--CcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 456788999999999999999999999999 999999974 33 48999999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.+|++...
T Consensus 78 l~v~~a~~~~~ 88 (92)
T 2dgv_A 78 IDVRIDRNASG 88 (92)
T ss_dssp CCCEECSCCSS
T ss_pred EEEEEcCCCCC
Confidence 99999988754
No 200
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=132.03 Aligned_cols=85 Identities=28% Similarity=0.527 Sum_probs=80.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987654
No 201
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=131.46 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=72.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
|+|||+|||+++|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+|+..|||..++|+.|+|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 78999999999999999999999999999999987 68999999999999999999999999999999999998754
No 202
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6.5e-16 Score=125.23 Aligned_cols=75 Identities=21% Similarity=0.498 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
+|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||.|.+.++|.+|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999995 9999999999999875
No 203
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=137.20 Aligned_cols=86 Identities=29% Similarity=0.421 Sum_probs=81.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||.|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 997654
No 204
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=133.97 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=75.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeC-CCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 294 EVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDK-DTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 294 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~-~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
.....++|||+|||+.+++++|+++|+.|| |..|+|+.++ .+|+++|||||.|.+.++|.+|+ .|||..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 356778999999999999999999999999 9999999998 58999999999999999999999 99999999999999
Q ss_pred EecCCC
Q 037049 373 MPARHK 378 (731)
Q Consensus 373 ~~a~~~ 378 (731)
.++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999865
No 205
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=130.91 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=72.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|++||.| +++++..|+++|||||+|.+.++|++||..|||..|.|+.|+|.++.++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 479999999999999999999999976 67777669999999999999999999999999999999999999998754
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
.
T Consensus 93 ~ 93 (101)
T 2fc9_A 93 S 93 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=125.86 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=76.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.| .|..|+|+++ .+|+++|||||.|.+.++|.+|+. |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456799999999999999999999999 8999999999 589999999999999999999998 999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98753
No 207
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=130.54 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=78.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34579999999999999999999999999998889998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 037049 376 RHK 378 (731)
Q Consensus 376 ~~~ 378 (731)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 208
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=7.3e-16 Score=140.14 Aligned_cols=80 Identities=29% Similarity=0.467 Sum_probs=76.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|..|+|++++. |+++|||||+|.+.++|++||..|||..|.|+.|+|.++++.
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4799999999999999999999999999999999986 999999999999999999999999999999999999999874
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 128 ~ 128 (135)
T 2lea_A 128 R 128 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 209
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=2.7e-15 Score=140.48 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=76.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|..|+|++++. +.++|||||+|.+.++|++||..||+..|.|+.|+|.++.+.
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999987 899999999999999999999999999999999999999874
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 120 ~ 120 (156)
T 1h2v_Z 120 K 120 (156)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.8e-15 Score=136.19 Aligned_cols=87 Identities=21% Similarity=0.420 Sum_probs=79.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...++++|||+|||..+|+++|+++|..||. |..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGE---IKNIHLNLDRRTGY--LKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSC---EEEEECCBCTTTSS--BCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4556788999999999999999999999999 99999999875544 899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999987654
No 211
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=3.8e-16 Score=170.09 Aligned_cols=86 Identities=21% Similarity=0.433 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||.|||+.+|+++|.++|..||. |..|+|+.+..++. ++|||||+|.+.++|.+||..|||..|.|++
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~--~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGP---IKRIHMVYSKRSGK--PRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCC---eeEEEeeccCCCCC--ccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 345678999999999999999999999999 99999999875554 8999999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.||+++..
T Consensus 174 i~V~~a~~~~~ 184 (437)
T 3pgw_S 174 VLVDVERGRTV 184 (437)
T ss_pred EEEEEeCCCCC
Confidence 99999987654
No 212
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=3.9e-16 Score=126.56 Aligned_cols=74 Identities=23% Similarity=0.445 Sum_probs=70.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
+|||+|||+++++++|+++|++||.|.+|.+++++. |+++|||||+|.+.++|.+|++ +++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999987 9999999999999999999998 6999999999999875
No 213
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.7e-15 Score=127.75 Aligned_cols=84 Identities=31% Similarity=0.499 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||.|.+.++|.+||. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4556799999999999999999999999999999999998899999999999999999999996 47899999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 998654
No 214
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=130.85 Aligned_cols=84 Identities=29% Similarity=0.377 Sum_probs=78.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||.|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4456799999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 98643
No 215
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.8e-16 Score=136.61 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=74.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEI-TDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|+.||.| ..|+|++++.|+++|||||+|.+.++|++||.. |+..|+|+.|+|.++.+.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 479999999999999999999999999 899999999999999999999999999999985 999999999999999853
No 216
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1e-15 Score=130.33 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred C
Q 037049 377 H 377 (731)
Q Consensus 377 ~ 377 (731)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 217
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=136.81 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
.....++|||+|||..+|+++|+++|+.||. |.+|+|+.++.++ .++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGP---IESVKIVCDRETR--QSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSC---EEEEEEEEETTTT--EEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4456788999999999999999999999999 9999999987554 4899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988754
No 218
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=133.02 Aligned_cols=85 Identities=21% Similarity=0.451 Sum_probs=79.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||.|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999966 99999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 998754
No 219
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=4e-16 Score=136.00 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=73.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE---ITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++|+++|+++|+.||. |..|+|++++.|+++|||||+|.+.++|++||. +|+..++|+.|+|.++.
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence 47999999999999999999999998 899999999889999999999999999999999 99999999999999887
Q ss_pred c
Q 037049 78 K 78 (731)
Q Consensus 78 ~ 78 (731)
+
T Consensus 91 ~ 91 (107)
T 2lmi_A 91 N 91 (107)
T ss_dssp H
T ss_pred H
Confidence 5
No 220
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.7e-15 Score=127.75 Aligned_cols=86 Identities=34% Similarity=0.528 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+.++.++. ++|||||+|.+.++|.+||. ++..|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGE---VLMVQVKKDLKTGH--SKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSC---EEEEEEEECSSSCS--EEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCC---eEEEEEEecCCCCC--ccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 4556788999999999999999999999999 99999999875554 89999999999999999999 47899999
Q ss_pred EEEEEeccCCchh
Q 037049 691 ALILQLCHAKKDE 703 (731)
Q Consensus 691 ~l~v~~ak~~~~~ 703 (731)
+|.|.+|.++.+.
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 84 WCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEEecCCCCcC
Confidence 9999999988653
No 221
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.9e-16 Score=129.37 Aligned_cols=81 Identities=23% Similarity=0.412 Sum_probs=76.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
..+++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||.|.+.++|..|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999988876
Q ss_pred C
Q 037049 376 R 376 (731)
Q Consensus 376 ~ 376 (731)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 222
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=132.42 Aligned_cols=84 Identities=30% Similarity=0.536 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|+.+. + .++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~--~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGK---ILDVEIIFNE--R--GSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCC---CSCEEECCBT--T--BCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCC---EEEEEEEECC--C--CCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4556788999999999999999999999999 9999999874 2 2899999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 037049 691 ALILQLCHAKK 701 (731)
Q Consensus 691 ~l~v~~ak~~~ 701 (731)
+|.|.+|+++.
T Consensus 98 ~l~V~~a~~~~ 108 (109)
T 2err_A 98 KIEVNNATARV 108 (109)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCc
Confidence 99999998863
No 223
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-16 Score=140.09 Aligned_cols=86 Identities=20% Similarity=0.355 Sum_probs=78.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEE--EEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCC---
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS--VKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGT--- 685 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~--vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~--- 685 (731)
...+.++|||+|||+.+|+++|+++|..||. |.. |+|++++.+|. ++|||||+|.+. +|.+|+..|||.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~---v~~~~v~i~~d~~tg~--~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAV---LSSSNVRVIKDKQTQL--NRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCC---CCTTTEECCBCSSSSS--BCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC---cceeeEEEEEcCCCCC--cceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 4456778999999999999999999999999 977 99999876654 899999999999 999999999999
Q ss_pred -ccCCcEEEEEeccCCch
Q 037049 686 -ILDGHALILQLCHAKKD 702 (731)
Q Consensus 686 -~i~Gr~l~v~~ak~~~~ 702 (731)
.|.||+|.|.+|+++..
T Consensus 93 ~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCGGGCCCCCEECCCSCC
T ss_pred ccCCCEEEEEEECCCCCC
Confidence 99999999999988743
No 224
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=133.59 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHH----HHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLR----KHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~----~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
...++++|||+|||+.+++++|+ ++|+.||. |.+|.++. ++ .++|||||+|.+.++|.+|+..|||..
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~---I~~v~i~~---~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGD---ILDIVVDL---SD--DNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSC---EEEEEECC---CC--SSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCC---eEEEEecc---CC--CcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 44567899999999999999876 69999999 99988864 33 389999999999999999999999999
Q ss_pred cCCcEEEEEeccCCchh
Q 037049 687 LDGHALILQLCHAKKDE 703 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~~~ 703 (731)
|.|++|+|.||+.+.+.
T Consensus 97 l~gr~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 97 FQGNPLVITFSETPQSQ 113 (127)
T ss_dssp CTTSCCEEEECCCCCHH
T ss_pred eCCCEEEEEEccCcchh
Confidence 99999999999988754
No 225
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=127.82 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=70.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLD--TCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~--g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|++|+..|||..+. |+.|+|.++++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 47999999999999999999999999999999875 789999999999999999999999999 99999999987
Q ss_pred C
Q 037049 79 V 79 (731)
Q Consensus 79 ~ 79 (731)
+
T Consensus 93 ~ 93 (97)
T 1why_A 93 G 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=9.9e-16 Score=135.49 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=73.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+++|||+|||+.+++++|+.+|+.||.|..|.++.+ +.++|||||.|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999874 45699999999999999999999999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 974
No 227
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1e-15 Score=133.23 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=69.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKG-EITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++|| .|..|.|+.+ +++|||||+|.+.++|++||+.|||..+.|+.|+|.++..
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4799999999999999999999999 8999998643 4789999999999999999999999999999999999874
No 228
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=125.27 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=73.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||.|.+.++|.+|+..++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999998 9999999999987
No 229
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=2.8e-15 Score=134.50 Aligned_cols=86 Identities=30% Similarity=0.628 Sum_probs=80.4
Q ss_pred cccCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 293 QEVLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 293 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||.|.+.++|..|+ .|||..|.|+.|.|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999 89999999999999
Q ss_pred EecCCCC
Q 037049 373 MPARHKK 379 (731)
Q Consensus 373 ~~a~~~~ 379 (731)
.++.+..
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998654
No 230
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=130.52 Aligned_cols=76 Identities=20% Similarity=0.403 Sum_probs=72.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+||..|||..+.|+.|+|.++++..
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 58999999999999999999999999999999987 7999999999999999999999999999999999999754
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 231
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=133.44 Aligned_cols=82 Identities=29% Similarity=0.445 Sum_probs=78.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||.|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999988999999999999999999999 9999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+.+
T Consensus 101 a~~ 103 (114)
T 2cq4_A 101 SQA 103 (114)
T ss_dssp HHH
T ss_pred cCC
Confidence 874
No 232
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=7e-16 Score=139.77 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=79.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeE--EEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCc----ccCCe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSE--VHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNS----IFQGR 368 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~----~~~g~ 368 (731)
....++|||+|||+.+++++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEecCCCCC
Q 037049 369 LLHVMPARHKKS 380 (731)
Q Consensus 369 ~l~V~~a~~~~~ 380 (731)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987644
No 233
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=124.63 Aligned_cols=73 Identities=23% Similarity=0.531 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|+|+ +|||||+|.+.++|++|+..|||..+.|+.|+|.++++..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 479999999999999999999999999999998 4899999999999999999999999999999999998754
No 234
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.7e-15 Score=125.55 Aligned_cols=80 Identities=15% Similarity=0.278 Sum_probs=73.4
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhc--CCCccCCceEEEEeCCC
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGL--AYKRYKGVPLYLEWAPS 567 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~l--ng~~~~gr~l~v~~a~~ 567 (731)
...+.++|||+|||+.+++++|+++|++||.|..|.+.+.+|||||+|.+.++|.+|+..| ++..+.|++|.|.|+..
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 3456789999999999999999999999999999999999999999999999999999977 46789999999999976
Q ss_pred Cc
Q 037049 568 DV 569 (731)
Q Consensus 568 ~~ 569 (731)
..
T Consensus 91 ~~ 92 (101)
T 2cq1_A 91 KE 92 (101)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 235
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=131.10 Aligned_cols=82 Identities=49% Similarity=0.856 Sum_probs=76.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCcc
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVL 570 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 570 (731)
..+.++|||+|||+.+++++|+++|++||.|..|.|++++|||||+|.+.++|.+|+..|||..|.|+.|.|.||....+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred cc
Q 037049 571 SQ 572 (731)
Q Consensus 571 ~~ 572 (731)
..
T Consensus 87 ~~ 88 (111)
T 1whx_A 87 GA 88 (111)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 236
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=123.36 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=71.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL-QGTILDG 689 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~l-ng~~i~G 689 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++++. ++|||||.|.+.++|.+|+..| ||..+.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~---i~~~~~~~--------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGE---IRTITVVQ--------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSC---EEEEEEEG--------GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCC---EeEEEEEC--------CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 4456788999999999999999999999999 99999986 5899999999999999999999 9999999
Q ss_pred cEEEEEecc
Q 037049 690 HALILQLCH 698 (731)
Q Consensus 690 r~l~v~~ak 698 (731)
++|.|.||+
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 999999986
No 237
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=132.10 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC--CCccC
Q 037049 612 RVESRSLFVKNLNFK-TCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ--GTILD 688 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~-~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln--g~~i~ 688 (731)
..++++|||+|||+. +|+++|+++|.+||. |.+|+|++ +||||||+|.+.++|.+|+..|| +..|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~---V~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK---IKNYILMR--------MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC---CSEEEEET--------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC---EEEEEEec--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 456789999999998 999999999999999 99999974 68999999999999999999886 45699
Q ss_pred CcEEEEEeccCCch
Q 037049 689 GHALILQLCHAKKD 702 (731)
Q Consensus 689 Gr~l~v~~ak~~~~ 702 (731)
||+|.|.||+.+..
T Consensus 91 Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 91 GRCVKVDLSEKYKK 104 (112)
T ss_dssp SSCCEEEEECSCSS
T ss_pred CEEEEEEECccccc
Confidence 99999999987654
No 238
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=3.6e-15 Score=132.27 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=76.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGN---VSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~---i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
....++|||+|||+.+++++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. +|+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999998 89999999984 9999999999999999999997 999999999999
Q ss_pred EEecCC
Q 037049 372 VMPARH 377 (731)
Q Consensus 372 V~~a~~ 377 (731)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999863
No 239
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.8e-15 Score=150.51 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=75.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKG--EITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++|+++|+++|++|| .|.+|+|++++. |+++|||||+|.+.++|++||+.|||..|.|+.|+|.++.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 5799999999999999999999999 999999999986 9999999999999999999999999999999999999987
Q ss_pred c
Q 037049 78 K 78 (731)
Q Consensus 78 ~ 78 (731)
+
T Consensus 149 ~ 149 (229)
T 3q2s_C 149 K 149 (229)
T ss_dssp H
T ss_pred C
Confidence 5
No 240
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=4.3e-15 Score=131.32 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=72.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+.+|+.||.|..|.|+++ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 47999999999999999999999999999999975 56689999999999999999999999999999999999986
No 241
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=129.63 Aligned_cols=74 Identities=16% Similarity=0.326 Sum_probs=70.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-----ceeEEEe
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDT-----CRISCEI 75 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g-----~~i~v~~ 75 (731)
++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|++||+.|||..|.| +.|+|.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 48999999999999999999999999999999987 899999999999999999999999999 9999999
Q ss_pred eccCC
Q 037049 76 ARKVG 80 (731)
Q Consensus 76 a~~~~ 80 (731)
+.++.
T Consensus 90 a~~~~ 94 (108)
T 1x4c_A 90 DGPRS 94 (108)
T ss_dssp SSCCS
T ss_pred CCCCC
Confidence 99753
No 242
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=2e-15 Score=131.40 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhcccc-CcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHI-KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G-~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
...++|||+|||+.+|+++|+++|+.|| . |..++|+... ++|||||+|.+.++|.+||..|||..|.|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~---v~~v~i~~~~------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLE---TTFSSVNTRD------FDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCC---CSEEECSSCS------SSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCe---eEEEEEEcCC------CCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3557899999999999999999999999 8 9999886532 7999999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 037049 692 LILQLCHAKK 701 (731)
Q Consensus 692 l~v~~ak~~~ 701 (731)
|.|.+++...
T Consensus 97 i~V~~a~~~p 106 (111)
T 2jvr_A 97 ITVERDDNPP 106 (111)
T ss_dssp EEEEESCC--
T ss_pred EEEEECCCCC
Confidence 9999997653
No 243
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=127.91 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=71.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++++..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 47999999999999999999999999999999876 7999999999999999999999999999999999998754
No 244
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.8e-15 Score=126.32 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=73.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCC--ccCCceEEEEeCCCC
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYK--RYKGVPLYLEWAPSD 568 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~--~~~gr~l~v~~a~~~ 568 (731)
..+.++|||+|||+.+++++|+++|++||.|..|.+.+.+|||||+|.+.++|.+|+..|++. .+.|++|.|.|+..+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 456789999999999999999999999999999999999999999999999999999988764 599999999999765
Q ss_pred cc
Q 037049 569 VL 570 (731)
Q Consensus 569 ~~ 570 (731)
..
T Consensus 92 ~~ 93 (104)
T 1wex_A 92 RI 93 (104)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=130.07 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-eeCCCCCceeEEEEEecCHHHHHHHHHHcC--CcccCCeEEE
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGN-VSEVHIV-VDKDTKRSKGIAYVLYAIPESASRAIEVLD--NSIFQGRLLH 371 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~i~i~-~d~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~~~g~~l~ 371 (731)
.+.++|||+|||+.+++++|+++|+.||. |..|.++ .++.+|.++|||||+|.+.++|..|+..|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEecCCCCC
Q 037049 372 VMPARHKKS 380 (731)
Q Consensus 372 V~~a~~~~~ 380 (731)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999997654
No 246
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=7.7e-15 Score=131.59 Aligned_cols=85 Identities=22% Similarity=0.405 Sum_probs=80.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
|.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987543
No 247
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=135.59 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=71.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCe----EEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEI----TDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
++|||+|||+++|+++|+++|++||.| ..|+|++++.|+++|||||+|.+.++|++||. .|+..|+|+.|.|..+
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIELFRS 102 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEEEEC
Confidence 479999999999999999999999975 68999999889999999999999999999998 5999999999999987
Q ss_pred cc
Q 037049 77 RK 78 (731)
Q Consensus 77 ~~ 78 (731)
.+
T Consensus 103 ~~ 104 (123)
T 2dha_A 103 TA 104 (123)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 248
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=127.34 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=69.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++||..|||..++|+.|+|.+++++
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5899999999999999999999999997 777764 67899999999999999999999999999999999999864
No 249
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=132.89 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=74.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEE
Q 037049 295 VLESGRLFVRNLPYTATEDELR----EHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l 370 (731)
..++++|||+|||+.+++++|+ .+|++||.|.+|.+.. +++++|||||.|.+.++|..|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999987753 68899999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 037049 371 HVMPARHKK 379 (731)
Q Consensus 371 ~V~~a~~~~ 379 (731)
.|.|+..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998653
No 250
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=128.74 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=77.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCccc--------C
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIF--------Q 366 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~--------~ 366 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||.|.+.++|..|+..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999999999 999999999999999999999999999999 6
Q ss_pred CeEEEEEecCCC
Q 037049 367 GRLLHVMPARHK 378 (731)
Q Consensus 367 g~~l~V~~a~~~ 378 (731)
|+.|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999864
No 251
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=123.98 Aligned_cols=72 Identities=35% Similarity=0.451 Sum_probs=68.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCceeEEEeec
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYF-NKSYLDTCRISCEIAR 77 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~-~g~~~~g~~i~v~~a~ 77 (731)
++|||+|||+++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| +|..+.|++|+|.+++
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 47999999999999999999999999999999985 799999999999999999988 9999999999999874
No 252
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=1e-14 Score=136.55 Aligned_cols=86 Identities=26% Similarity=0.393 Sum_probs=81.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987544
No 253
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=127.03 Aligned_cols=81 Identities=27% Similarity=0.351 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..++|+. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~~~~--------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGK---AGEVFIHK--------DKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCC---CSEEEEET--------TTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCC---eEEEEEec--------CCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4456788999999999999999999999999 99999885 589999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpj_A 80 QLRVRFACHSAS 91 (99)
T ss_dssp CCEEEESSCCSC
T ss_pred eEEEEEcCCCCC
Confidence 999999988743
No 254
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.4e-15 Score=127.57 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEE-EEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS-VKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG 689 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~-vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G 689 (731)
.....++|||+|||+.+|+++|+++|..||. |.. |+|+.+ .+| +++|||||+|.+.++|.+||.. |+..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---v~~~v~i~~~-~~g--~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEI---VPNGMTLPVD-FQG--RSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCE---EEEEEECCBC-SSS--CBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---cceeEEEEEC-CCC--CcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 3446678999999999999999999999998 887 888887 354 4899999999999999999997 9999999
Q ss_pred cEEEEEeccCCc
Q 037049 690 HALILQLCHAKK 701 (731)
Q Consensus 690 r~l~v~~ak~~~ 701 (731)
|+|.|.++.+++
T Consensus 84 r~i~v~~~~~~~ 95 (104)
T 1wg5_A 84 RYIEIFKSSRAE 95 (104)
T ss_dssp SCCEEEEECTTT
T ss_pred cEEEEEECCHHH
Confidence 999999998764
No 255
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=127.53 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=76.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999965 455899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987654
No 256
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=130.46 Aligned_cols=73 Identities=23% Similarity=0.233 Sum_probs=69.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++++++|+++|++||.|..|.|+.. +|||||+|.+.++|++||..|||..+.|+.|+|.++..
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999998763 79999999999999999999999999999999999985
No 257
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.9e-15 Score=125.32 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC--
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD-- 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~-- 688 (731)
...+.++|||.|||..+|+++|+++|+.||. |..++++. .+|||||+|.+.++|.+|+..|||..|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---v~~v~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 81 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGS---IRTIDHVK--------GDSFAYIQYESLDAAQAACAKMRGFPLGGP 81 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSC---EEEEEECS--------SSCCEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEeC--------CCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 4456688999999999999999999999999 99998875 3789999999999999999999999999
Q ss_pred CcEEEEEeccCCc
Q 037049 689 GHALILQLCHAKK 701 (731)
Q Consensus 689 Gr~l~v~~ak~~~ 701 (731)
|++|.|.||+++.
T Consensus 82 g~~l~V~~a~~~~ 94 (97)
T 1why_A 82 DRRLRVDFAKSGP 94 (97)
T ss_dssp SCBCEEEECCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998874
No 258
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=126.15 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
....++|||+|||..+|+++|+++|..||. |. +.++... ++|||||.|.+.++|.+|+..|||..|.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---v~-~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGS---VP-LRLTWQG------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTC---CC-SEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCC---EE-EEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345678999999999999999999999999 86 6777653 8999999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 037049 692 LILQLCHAKK 701 (731)
Q Consensus 692 l~v~~ak~~~ 701 (731)
|.|.+|+++.
T Consensus 86 l~V~~a~~~~ 95 (97)
T 2e5j_A 86 LRVALARQQR 95 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998874
No 259
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=127.32 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=76.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||. ..|+|+.++ +|+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 456679999999999999999999999995 599999998 8999999999999999999999 6899999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 886543
No 260
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=8e-15 Score=134.55 Aligned_cols=81 Identities=27% Similarity=0.503 Sum_probs=77.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.+|.++|||||.|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 037049 375 A 375 (731)
Q Consensus 375 a 375 (731)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=8.1e-16 Score=129.56 Aligned_cols=80 Identities=40% Similarity=0.649 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecCCC
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPARHK 378 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~~~ 378 (731)
++|||+|||..+++++|+++|+.||.|..|.+++++.+|.++|||||.|.+.+ |..|+..|||..+.|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999988999999999999999 99999999999999999999999865
Q ss_pred C
Q 037049 379 K 379 (731)
Q Consensus 379 ~ 379 (731)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 262
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.8e-15 Score=129.11 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=72.7
Q ss_pred CcCCCcEEEEeCCCCC-CCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCC--CccCCceEEEEeCC
Q 037049 490 LKRSNHVFLVKNLPYD-SSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAY--KRYKGVPLYLEWAP 566 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~-~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng--~~~~gr~l~v~~a~ 566 (731)
...+.++|||+|||++ +++++|+++|++||.|.+|.|.+++|||||+|.+.++|..|+..|++ ..|.|++|+|.|+.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 4557889999999998 99999999999999999999999999999999999999999998864 56999999999996
Q ss_pred CC
Q 037049 567 SD 568 (731)
Q Consensus 567 ~~ 568 (731)
..
T Consensus 101 ~~ 102 (112)
T 1x4f_A 101 KY 102 (112)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 263
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.7e-15 Score=122.86 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=72.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||+|||..+|+++|+++|+.||. |..++|+ +|||||+|.+.++|.+|+..|||..|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGK---VLECDII----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSC---EEEEEEE----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCC---EEEEEEE----------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 446678999999999999999999999999 9999887 579999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.+|+++..
T Consensus 72 l~v~~a~~~~~ 82 (90)
T 2dnq_A 72 INVEASKNKSK 82 (90)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999988754
No 264
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.3e-15 Score=130.46 Aligned_cols=78 Identities=12% Similarity=0.256 Sum_probs=71.2
Q ss_pred CeEEEeCC----CCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecC----HHH----HHHHHH--HhCCCc
Q 037049 1 SRICVKNL----PKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRT----EQE----AEEAIK--YFNKSY 65 (731)
Q Consensus 1 s~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~----~~~----a~~ai~--~~~g~~ 65 (731)
++|||+|| |+.+++.+|+.+|++||.|.+|.++.|+. |+++|||||+|.+ +.+ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 99999999999999999999999999999 9999999999996 433 899998 789999
Q ss_pred cCCceeEEEeecc
Q 037049 66 LDTCRISCEIARK 78 (731)
Q Consensus 66 ~~g~~i~v~~a~~ 78 (731)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998763
No 265
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-15 Score=136.96 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=70.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTK-DGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|+.||.|..+.++.+. .|+++|||||+|.+.++|.+||. |||..|+|+.|+|.++.+
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 479999999999999999999999999885555544 49999999999999999999999 999999999999999875
No 266
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=126.18 Aligned_cols=83 Identities=31% Similarity=0.472 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. | +|+.+. ++ .++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~---v---~~~~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATF---I---KVPQNQ-NG--KSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSE---E---ECCBCS-SS--CBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCE---E---EEEECC-CC--CEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 4556789999999999999999999999997 7 555552 33 4899999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 82 ~l~v~~a~~~~~ 93 (101)
T 2fc9_A 82 AIRLELQGPRGS 93 (101)
T ss_dssp EEEEEECSSCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999988743
No 267
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=5.6e-15 Score=128.19 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCCCCC------CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 613 VESRSLFVKNLNFKT------CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~------tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
...++|||+|||..+ |+++|+++|+.||. |.+|+|+. .+| .++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~---v~~v~i~~--~~g--~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK---ITNDFYPE--EDG--KTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSC---EEEEECCC--BTT--BSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCC---EEEEEeeC--CCC--CeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 346789999999999 78999999999999 99999983 244 489999999999999999999999999
Q ss_pred cCCc-EEEEEeccCCch
Q 037049 687 LDGH-ALILQLCHAKKD 702 (731)
Q Consensus 687 i~Gr-~l~v~~ak~~~~ 702 (731)
|.|+ +|.|.+|...++
T Consensus 86 ~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp CSTTCEEEEECSCCCCC
T ss_pred cCCCceEEEEEcchHhh
Confidence 9998 999999986643
No 268
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=8.5e-15 Score=124.96 Aligned_cols=72 Identities=26% Similarity=0.396 Sum_probs=68.1
Q ss_pred CeEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPK-YVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+ ++++++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|||..++|+.|+|.++++.
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 5899999998 99999999999999999999983 689999999999999999999999999999999999853
No 269
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=131.49 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=78.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccE-EEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI-LSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG 689 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I-~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G 689 (731)
...+.++|||+|||+.+|+++|+++|..||. | ..|+|+.+. +|. ++|||||+|.+.++|.+||.. |+..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~---v~~~v~i~~d~-~g~--~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPV---DENAVHVLVDN-NGQ--GLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCC---CSTTEEECCCT-TSS--CSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCC---cCCeEEEEECC-CCC--cceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 3456688999999999999999999999998 8 789999987 544 999999999999999999997 9999999
Q ss_pred cEEEEEeccCCchhh
Q 037049 690 HALILQLCHAKKDEQ 704 (731)
Q Consensus 690 r~l~v~~ak~~~~~~ 704 (731)
++|.|.+|.++....
T Consensus 84 r~i~v~~a~~~~~~~ 98 (114)
T 2cpy_A 84 REAFVHVVTLEDMRE 98 (114)
T ss_dssp EEEEEEEECHHHHHH
T ss_pred eEEEEEECCHHHHHH
Confidence 999999998876543
No 270
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-16 Score=133.49 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|.. .++.++. |+++|||||+|.+.++|++||+ |||..+.|+.|+|.++.++
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 37999999999999999999999999888 6666655 8999999999999999999999 9999999999999999864
No 271
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.8e-15 Score=129.15 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||.++++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..|||..++|+.|+|.++++
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5799999999999999999999999999999984 489999999999999999999999999999999999875
No 272
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=134.41 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|+.++.++. ++|||||.|.+.++|.+|+..|||..|.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGD---ITDIQIPLDYETEK--HRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSC---EEEEECCCCTTTCC--CCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCC---EEEEEEeecCCCCC--cCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4456788999999999999999999999999 99999999875554 899999999999999999999999999999
Q ss_pred EEEEEec
Q 037049 691 ALILQLC 697 (731)
Q Consensus 691 ~l~v~~a 697 (731)
+|+|.||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999987
No 273
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=4.2e-15 Score=134.44 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=76.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGN---VSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~---i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
....++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||+ +|+..|.||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445679999999999999999999999999 89999999995 9999999999999999999997 999999999999
Q ss_pred EEecCC
Q 037049 372 VMPARH 377 (731)
Q Consensus 372 V~~a~~ 377 (731)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999863
No 274
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=2.7e-15 Score=133.42 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=70.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeE--EEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEIT--DAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|+.| .|. .|+|++++.|+++|||||+|.+.++|++||+ +++..|+|+.|+|..+.+
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 479999999999999999999999 677 9999999889999999999999999999998 688999999999998764
No 275
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.9e-15 Score=129.40 Aligned_cols=78 Identities=15% Similarity=0.410 Sum_probs=74.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|+|++++.|+++|||||+|.+.++|++||. ++..++|+.|.|.++.++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 47999999999999999999999999999999999889999999999999999999998 9999999999999988643
No 276
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=6.7e-15 Score=125.77 Aligned_cols=84 Identities=25% Similarity=0.379 Sum_probs=76.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 612 RVESRSLFVKNLNFKTCDENLR----KHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~----~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
..++++|||+|||..+|+++|+ ++|+.||. |..++|+.. +.++|||||+|.+.++|.+|+..|||..|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~---i~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ---ILDILVSRS-----LKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSC---EEEEECCHH-----HHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCC---EEEEEEEcC-----CCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999999999999 99999999 999998842 33899999999999999999999999999
Q ss_pred CCcEEEEEeccCCchh
Q 037049 688 DGHALILQLCHAKKDE 703 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~~~ 703 (731)
.|++|.|.||+++.+.
T Consensus 77 ~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 77 YDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTEECEEEECSSCCTH
T ss_pred CCcEEEEEEccCCCcc
Confidence 9999999999988654
No 277
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.9e-15 Score=125.38 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=69.3
Q ss_pred CeEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPK-YVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|..||..|||..+.|+.|+|.++++.
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 4799999998 99999999999999999999984 589999999999999999999999999999999999875
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 84 ~~ 85 (96)
T 2kvi_A 84 AR 85 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 278
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.9e-15 Score=128.30 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
...++|||+|||..+|+++|+++|+.||. |.+++|+. ++|||||.|.+.++|.+|+..|||..|.|++|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~---i~~~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGF---ILDFKHYP--------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSC---CSEEEEET--------TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCC---EEEEEEec--------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 35678999999999999999999999999 99999983 78999999999999999999999999999999
Q ss_pred EEEeccCC
Q 037049 693 ILQLCHAK 700 (731)
Q Consensus 693 ~v~~ak~~ 700 (731)
+|.||+++
T Consensus 94 ~V~~a~~~ 101 (101)
T 2la4_A 94 RTGWGKER 101 (101)
T ss_dssp CCCBCCCC
T ss_pred EEEeccCC
Confidence 99999875
No 279
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.6e-15 Score=128.31 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||+.+++++|+++|+.| .|..|.|+.|+ .|+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345699999999999999999999999 89999999998 5999999999999999999999 79999999999999888
Q ss_pred CC
Q 037049 376 RH 377 (731)
Q Consensus 376 ~~ 377 (731)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 63
No 280
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-15 Score=126.15 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=71.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++++++|+++|+.|+ .|++++++. ++++|||||+|.+.++|++||..|||..|.|+.|+|.+++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 4799999999999999999999874 688888876 999999999999999999999999999999999999999975
Q ss_pred CC
Q 037049 80 GD 81 (731)
Q Consensus 80 ~~ 81 (731)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 281
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=125.87 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=73.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC--
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG-- 689 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G-- 689 (731)
....++|||.|||..+|+++|+++|..||. |..|+|+.+ |||||+|.+.++|.+||..|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGD---VCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSC---EEEEEEETT---------TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EeEEEEecC---------CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 445678999999999999999999999999 999999863 899999999999999999999999999
Q ss_pred ---cEEEEEeccCCch
Q 037049 690 ---HALILQLCHAKKD 702 (731)
Q Consensus 690 ---r~l~v~~ak~~~~ 702 (731)
++|.|.+|+++..
T Consensus 80 ~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 80 GETAYIRVKVDGPRSP 95 (108)
T ss_dssp SCEEEEEEEESSCCSC
T ss_pred CcceEEEEEeCCCCCC
Confidence 9999999998753
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=1.4e-15 Score=138.02 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=72.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++|| |..|+|++++.|+++|||||+|.+.++|++|| .+|+..|.|+.|+|.++.+.
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 3799999999999999999999999 77999999988999999999999999999999 69999999999999988764
No 283
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=122.49 Aligned_cols=73 Identities=26% Similarity=0.474 Sum_probs=69.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|++||.|..|+|++ |||||+|.+.++|++||..|||..+.|+.|+|.++.+..
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4799999999999999999999999999999985 499999999999999999999999999999999998753
No 284
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=1.3e-14 Score=125.47 Aligned_cols=74 Identities=30% Similarity=0.414 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++|+++|+++|++||.|..|+|++ |||||+|.+.++|.+||..|||..|.|+.|+|.++.+..
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4799999999999999999999999999999874 599999999999999999999999999999999998755
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
.
T Consensus 85 ~ 85 (103)
T 2dgu_A 85 Q 85 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 285
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=127.00 Aligned_cols=80 Identities=19% Similarity=0.392 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
....++|||+|||..+|+++|+++|..||. |..|+|+.+ +|||||.|.+.++|.+|+..|||..|.|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~v~i~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQ---IMEIRVFPE--------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSC---EEEEEEETT--------TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEeCC--------CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 346678999999999999999999999999 999999873 789999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.||+++..
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99999998754
No 286
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=8.5e-15 Score=127.57 Aligned_cols=72 Identities=22% Similarity=0.425 Sum_probs=68.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..++|+.|+|.++++.
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 579999999999999999999999999999998 589999999999999999999999999999999999864
No 287
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-15 Score=130.97 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=76.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|.. .++.+..+|.++|||||.|.+.++|.+|++ |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345679999999999999999999999999888 677777789999999999999999999997 999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 288
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5e-15 Score=132.76 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=75.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|+++|||||.|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999886677776799999999999999999999997 999999999999999
Q ss_pred cCC
Q 037049 375 ARH 377 (731)
Q Consensus 375 a~~ 377 (731)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 974
No 289
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=122.69 Aligned_cols=72 Identities=24% Similarity=0.424 Sum_probs=67.1
Q ss_pred CeEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCe-EEE
Q 037049 299 GRLFVRNLPYTA------TEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGR-LLH 371 (731)
Q Consensus 299 ~~l~v~nLp~~~------t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~-~l~ 371 (731)
++|||+|||+.+ ++++|+.+|+.||.|..|.+++ .+|.++|||||.|.+.++|..|+..|||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7799999999999999999873 4899999999999999999999999999999999 887
Q ss_pred E
Q 037049 372 V 372 (731)
Q Consensus 372 V 372 (731)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 290
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.3e-15 Score=121.96 Aligned_cols=75 Identities=21% Similarity=0.424 Sum_probs=71.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
+|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||.|.+.++|.+|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999995 5899999999999875
No 291
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=2e-14 Score=122.61 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=71.0
Q ss_pred CCCCCCeEEEeCCCC-CCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 037049 611 DRVESRSLFVKNLNF-KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG 689 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~-~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G 689 (731)
...+.++|||+|||. .+|+++|+++|+.||. |..++|. +|||||+|.+.++|.+|+..|||..+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~---v~~v~i~----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH---IMQINIK----------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC---EEEEEEC----------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC---EEEEEEe----------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 344678899999998 9999999999999999 9999883 6899999999999999999999999999
Q ss_pred cEEEEEeccCC
Q 037049 690 HALILQLCHAK 700 (731)
Q Consensus 690 r~l~v~~ak~~ 700 (731)
++|.|.+|+++
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999999876
No 292
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=122.00 Aligned_cols=73 Identities=19% Similarity=0.412 Sum_probs=69.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..+.|+.|+|.+++++.
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 4799999999999999999999999999999985 499999999999999999999999999999999998754
No 293
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=122.29 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=71.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccc--cCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEH--IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~--G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~ 688 (731)
...+.++|||+|||..+|+++|+++|..| |. |..++++ +|||||.|.+.++|.+|+..|||..|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~---v~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA---VERVKKI----------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC---EEEEEEC----------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc---eEEEEEe----------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 44567889999999999999999999999 66 9988653 679999999999999999999999999
Q ss_pred CcEEEEEeccCCch
Q 037049 689 GHALILQLCHAKKD 702 (731)
Q Consensus 689 Gr~l~v~~ak~~~~ 702 (731)
|++|.|.||+++..
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 GSPIEVTLAKPVDK 91 (99)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999988754
No 294
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=123.05 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=68.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQK--GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+||..|||..+.|+.|+|.++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 479999999999999999999999 999999875 47999999999999999999999999999999999997
Q ss_pred CCC
Q 037049 79 VGD 81 (731)
Q Consensus 79 ~~~ 81 (731)
...
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 295
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=118.31 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCCe-EEEeCCCCCCCHHH----HHHHhcccc-CcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 613 VESRS-LFVKNLNFKTCDEN----LRKHFGEHI-KEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 613 ~~~~~-L~V~NLp~~~tee~----L~~~F~~~G-~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
.|..| |||+|||+.+++++ |+++|++|| + |.+| + .|||||.|.+.++|.+|++.|||+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~---Vl~V-------t-----gG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK---VLSI-------T-----GCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC---EEEC-------C-----TTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe---eEEE-------e-----cCEEEEEECCHHHHHHHHHHhcCCc
Confidence 34555 99999999999987 558999995 8 8887 2 2899999999999999999999999
Q ss_pred cCCcEEEEEeccCCch
Q 037049 687 LDGHALILQLCHAKKD 702 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~~ 702 (731)
|.||+|+|+||+.+.+
T Consensus 71 l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 71 VFGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSSSCCEEESSCCSCC
T ss_pred cCCceEEEEecCCCcc
Confidence 9999999999998865
No 296
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=2.3e-14 Score=123.93 Aligned_cols=80 Identities=25% Similarity=0.424 Sum_probs=73.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|..||. |..|+|+ +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~v~~~----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGK---LERVKKL----------KDYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSC---EEEEEEC----------SSCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEE----------CCEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 3456688999999999999999999999999 9999876 45799999999999999999999999999
Q ss_pred EEEEEeccCCchh
Q 037049 691 ALILQLCHAKKDE 703 (731)
Q Consensus 691 ~l~v~~ak~~~~~ 703 (731)
+|.|.||+++...
T Consensus 74 ~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 74 NIEIVFAKPPDQK 86 (103)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEcCCCccc
Confidence 9999999887654
No 297
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=5e-15 Score=126.31 Aligned_cols=76 Identities=30% Similarity=0.447 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+.+++++|+++|++||.|..+ ...|+++|||||+|.+.++|.+||..|||..+.|+.|+|.++.++.
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 479999999999999999999999987665 3448899999999999999999999999999999999999998653
No 298
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=121.20 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=72.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|++ |||||.|.+.++|.+|+..|||..|.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~v~~~~----------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGP---VIECDIVK----------DYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSC---CCEEEECS----------SEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEC----------CEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4556788999999999999999999999999 99998874 3899999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 73 ~l~V~~a~~~~~ 84 (92)
T 2dgt_A 73 RMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEESSCCCS
T ss_pred EEEEEEccCCCC
Confidence 999999988754
No 299
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=123.62 Aligned_cols=83 Identities=30% Similarity=0.406 Sum_probs=76.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 688888888999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 998754
No 300
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=6.2e-15 Score=126.01 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=75.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEE
Q 037049 295 VLESGRLFVRNLPYTATEDELR----EHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLL 370 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l 370 (731)
..++++|||+|||..+++++|+ .+|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998874 57789999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 037049 371 HVMPARHKK 379 (731)
Q Consensus 371 ~V~~a~~~~ 379 (731)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 301
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1e-14 Score=138.93 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=75.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+.+++++|+++|++||.|..|.|+.++.|.++|||||+|.+.++|.+||..|||..|.|+.|+|.++.+.
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 4799999999999999999999999999999999988999999999999999999999999999999999999999853
No 302
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=3e-15 Score=163.02 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEecC
Q 037049 297 ESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPAR 376 (731)
Q Consensus 297 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a~ 376 (731)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34699999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 037049 377 HKKS 380 (731)
Q Consensus 377 ~~~~ 380 (731)
+...
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7543
No 303
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-16 Score=137.54 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=75.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITD--------AKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRI 71 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i 71 (731)
++|||+|||+++++++|+++|++||.|.. |+|++++. |+++|||||+|.+.++|++||..|||..+.|+.|
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 87 (116)
Confidence 47999999999999999999999999999 99999977 9999999999999999999999999999999999
Q ss_pred EEEeeccCC
Q 037049 72 SCEIARKVG 80 (731)
Q Consensus 72 ~v~~a~~~~ 80 (731)
+|.++.++.
T Consensus 88 ~V~~a~~~~ 96 (116)
T 2lcw_A 88 KVSFATRRA 96 (116)
Confidence 999998754
No 304
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.1e-15 Score=129.94 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=74.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..+.+..+..+|.++|||||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999984443333323788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 997654
No 305
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=4.1e-15 Score=129.51 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=75.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGN---VSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~---i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
....++|||+|||+.+++++|+++|+.||. |..|.|+.++. |+++|||||.|.+.++|.+||. +|+..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456679999999999999999999999998 89999999995 9999999999999999999997 999999999999
Q ss_pred EEecCC
Q 037049 372 VMPARH 377 (731)
Q Consensus 372 V~~a~~ 377 (731)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999874
No 306
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=1.8e-14 Score=125.55 Aligned_cols=79 Identities=22% Similarity=0.433 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|+ +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGP---MKEVKIL----------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSC---CCEEEEE----------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC---EEEEEEE----------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3456788999999999999999999999999 9999887 68999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 94 ~l~V~~a~~~~~ 105 (108)
T 2jvo_A 94 PLEVVYSKLPAK 105 (108)
T ss_dssp ECEEESCSCCC-
T ss_pred EEEEEEecCCCC
Confidence 999999988744
No 307
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=3.2e-14 Score=126.28 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=70.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccE-EEEEeCCHHHHHHHHHHhCCCccCC--cEEE
Q 037049 617 SLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF-GFIEFDSVETATNVCRDLQGTILDG--HALI 693 (731)
Q Consensus 617 ~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~-afV~F~s~e~A~~Ai~~lng~~i~G--r~l~ 693 (731)
.|||.||++.+|+++|+++|++||. |.+|+|+.. .+|| |||+|.+.++|.+|+..|||+.|.| ++|+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~---V~~V~i~~~-------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGT---VLKIITFTK-------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSC---EEEEEEEEE-------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCC---EEEEEEEcC-------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 4889999999999999999999999 999988864 4788 9999999999999999999999988 9999
Q ss_pred EEeccCCc
Q 037049 694 LQLCHAKK 701 (731)
Q Consensus 694 v~~ak~~~ 701 (731)
|.||+++.
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99999874
No 308
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=122.57 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=67.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGE-ITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNK-SYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g-~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++||..||| ..++|+.|+|.++.+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 57999999999999999999999999 6666653 379999999999999999999999 999999999999987
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
+.
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 309
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=4.2e-15 Score=136.95 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEE--------EEeeecCCCCcccccEEEEEeCCHHHHHHHHHH
Q 037049 610 PDRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSV--------KVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681 (731)
Q Consensus 610 ~~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~v--------ki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ 681 (731)
....++++|||+|||+.+|+++|+++|+.||. |..+ ++.. +| .++|||||.|.+.++|.+|+..
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~~~~~~di~~~~---~g--~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVD---FSSETQRIMFDIRLMK---EG--RMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCC---TTCHHHHHHCEEEEEE---ET--TTEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC---cccccccceeeEEecc---CC--CcccEEEEEeCCHHHHHHHHHH
Confidence 34567789999999999999999999999998 7663 3332 33 3899999999999999999999
Q ss_pred hCCCccCCcEEEEEeccCCchh
Q 037049 682 LQGTILDGHALILQLCHAKKDE 703 (731)
Q Consensus 682 lng~~i~Gr~l~v~~ak~~~~~ 703 (731)
|||..|.|++|.|.||+.....
T Consensus 112 lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 112 ANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HTTBEETTEECEEEECCCSCC-
T ss_pred hCCCEeCCcEEEEEECCCCCCc
Confidence 9999999999999999876554
No 310
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.8e-14 Score=120.78 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEE-EeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVK-VKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vk-i~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
....++|||+|||..+|+++|+++|..||. |..++ |+.++ ..|.|||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~i~~~~------~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGV---VESCEQVNTDS------ETAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSC---EEEEEEECCSS------SSEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCC---eEEEEEeecCC------CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 345678999999999999999999999999 99994 88775 344599999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 037049 691 ALILQLCHAKK 701 (731)
Q Consensus 691 ~l~v~~ak~~~ 701 (731)
+|.|.+|++++
T Consensus 83 ~l~V~~a~~~~ 93 (96)
T 2e44_A 83 TLKVAYIPDEM 93 (96)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEEcCccc
Confidence 99999999874
No 311
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=3.2e-14 Score=126.26 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=69.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--ceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQF-AFIGFRTEQEAEEAIKYFNKSYLDT--CRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~ai~~~~g~~~~g--~~i~v~~a~~ 78 (731)
+|||+|||+.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|..|++.|||..|.| +.|+|+++++
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 68999999999999999999999999999988742 577 9999999999999999999999998 8999999997
Q ss_pred C
Q 037049 79 V 79 (731)
Q Consensus 79 ~ 79 (731)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 4
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=126.77 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccE----EEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRI----LSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I----~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
...+.++|||+|||..+|+++|+++|..||. | +.++++ ++. ++|||||+|.+.++|.+|+..|||..
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~----~g~--~~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQE---KKGPPIQFRMM----TGR--MRGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHH---SSSSCCEEEEE----CSS--SCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC---ccceEEEEEcC----CCc--cceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456789999999999999999999999998 8 455554 333 89999999999999999999999999
Q ss_pred cCCcEEEEEeccCCch
Q 037049 687 LDGHALILQLCHAKKD 702 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~~ 702 (731)
|.|++|.|.||+++..
T Consensus 92 ~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 92 LYGKILVIEFGKNKKQ 107 (115)
T ss_dssp CSSCBCEEEECCCCSC
T ss_pred eCCcEEEEEEccCCCC
Confidence 9999999999998754
No 313
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=3e-14 Score=131.31 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=70.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--ceeEEEeeccC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDT--CRISCEIARKV 79 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g--~~i~v~~a~~~ 79 (731)
+|||+|||+.+|+++|+++|++||.|.+|+|..+ +++|||||+|.+.++|..|++.|||..|.| +.|+|+++++.
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 6899999999999999999999999999999764 357999999999999999999999999965 99999999975
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 3
No 314
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.7e-14 Score=118.63 Aligned_cols=79 Identities=18% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|||..+|+++|+++|+.||. |..++|++ |||||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~~~----------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGR---VIECDVVK----------DYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSC---EEEEEECS----------SCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCC---EEEEEEEC----------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3456788999999999999999999999999 99999874 3799999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 72 ~l~v~~a~~~~~ 83 (90)
T 2dnp_A 72 RINVELSTKGQK 83 (90)
T ss_dssp ECEEEESCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988743
No 315
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.8e-14 Score=122.80 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 612 RVESRSLFVKNLNF-KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 612 ~~~~~~L~V~NLp~-~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
..+.++|||+|||. .+|+++|+++|+.||. |..++|. +|||||+|.+.++|.+|+..|||..+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~---v~~v~i~----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH---IMQINIK----------NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCC---CCEEEEE----------TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC---EEEEEEe----------CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 45678899999998 9999999999999999 9999883 68999999999999999999999999999
Q ss_pred EEEEEeccCCchh
Q 037049 691 ALILQLCHAKKDE 703 (731)
Q Consensus 691 ~l~v~~ak~~~~~ 703 (731)
+|.|.+|+++...
T Consensus 74 ~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 74 KLILEVSSSNARP 86 (96)
T ss_dssp TBCEEEEECCCC-
T ss_pred EEEEEEcCcCCCC
Confidence 9999999887653
No 316
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=128.92 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEE
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNV----SEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLH 371 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i----~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~ 371 (731)
...++|||+|||+.+|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|.+||.. |+..|.||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456799999999999999999999999975 689999996 899999999999999999999964 99999999999
Q ss_pred EEecCC
Q 037049 372 VMPARH 377 (731)
Q Consensus 372 V~~a~~ 377 (731)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998863
No 317
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2e-14 Score=124.64 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=72.1
Q ss_pred CeEEEeCC----CCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecC----HHH----HHHHHH--HcCCcc
Q 037049 299 GRLFVRNL----PYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAI----PES----ASRAIE--VLDNSI 364 (731)
Q Consensus 299 ~~l~v~nL----p~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~----~e~----A~~Al~--~l~~~~ 364 (731)
..|||+|| |+.+++.+|+++|+.||.|.++.++.|+.||+++|||||.|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999999999999999999999996 433 889988 789999
Q ss_pred cCCeEEEEEecCC
Q 037049 365 FQGRLLHVMPARH 377 (731)
Q Consensus 365 ~~g~~l~V~~a~~ 377 (731)
|.|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998763
No 318
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=2.1e-14 Score=125.82 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=68.2
Q ss_pred CeEEEeCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKY-VTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||++ +++++|+++|++||.|..|.| ++|||||+|.+.++|++||..|||..++|+.|+|.++++.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 48999999999 999999999999999999998 3799999999999999999999999999999999999853
No 319
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=3.7e-14 Score=130.74 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=71.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCC--cEEE
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDG--HALI 693 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~G--r~l~ 693 (731)
.+|||+||++.+|+++|+++|++||. |.+|+|..+. ++|||||+|.+.++|.+|+..|||+.|.| ++|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~---V~~V~i~~k~------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGT---VLKIITFTKN------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSC---EEEEEEEESS------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCC---EEEEEEEeCC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 45899999999999999999999999 9999997542 68999999999999999999999999966 9999
Q ss_pred EEeccCCc
Q 037049 694 LQLCHAKK 701 (731)
Q Consensus 694 v~~ak~~~ 701 (731)
|.||+++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99999875
No 320
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.2e-14 Score=123.33 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=74.0
Q ss_pred cCCCcEEEE--eCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCcc-----CCceEEEE
Q 037049 491 KRSNHVFLV--KNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRY-----KGVPLYLE 563 (731)
Q Consensus 491 ~~~~~~l~V--~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~-----~gr~l~v~ 563 (731)
..+.++||| +||++.+++++|+++|++||.|..|.+++.+|||||+|.+.++|.+|+..|||..+ .|++|+|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 445778999 56999999999999999999999999999999999999999999999999999988 79999999
Q ss_pred eCCCCcccc
Q 037049 564 WAPSDVLSQ 572 (731)
Q Consensus 564 ~a~~~~~~~ 572 (731)
|+..-.+..
T Consensus 102 ~a~~~p~~~ 110 (114)
T 2cq2_A 102 FVEKVQWSG 110 (114)
T ss_dssp EESCCCCSS
T ss_pred ecccCcccC
Confidence 997654433
No 321
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3e-14 Score=119.36 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=62.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--CCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL--DTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~--~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ ++|..+ .|+.|.|.++.+
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 58999999999999999999999999999999985 68999999999999983 566554 599999999886
Q ss_pred C
Q 037049 79 V 79 (731)
Q Consensus 79 ~ 79 (731)
+
T Consensus 84 k 84 (89)
T 3d2w_A 84 K 84 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=9.8e-15 Score=134.46 Aligned_cols=79 Identities=32% Similarity=0.409 Sum_probs=69.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEE------EEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDA------KLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCE 74 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v------~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~ 74 (731)
++|||+|||+++|+++|+.+|+.||.|..| .+.....|+++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 479999999999999999999999998764 12112348999999999999999999999999999999999999
Q ss_pred eeccC
Q 037049 75 IARKV 79 (731)
Q Consensus 75 ~a~~~ 79 (731)
++++.
T Consensus 126 ~a~~~ 130 (143)
T 3egn_A 126 FARSA 130 (143)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99864
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.1e-14 Score=118.95 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=72.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
...+.++|||+|| .+|+++|+++|..||. |..|+|.. ++|||||.|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~---i~~v~i~~--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGN---IIDLSMDP--------PRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSC---EEEEEEET--------TTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCC---EEEEEecC--------CCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4456788999996 8999999999999999 99999852 789999999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.||+++..
T Consensus 78 ~l~v~~a~~~~~ 89 (97)
T 1x5p_A 78 QLKVNIARKQPM 89 (97)
T ss_dssp EEEEECCSSCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988754
No 324
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=1.3e-14 Score=125.23 Aligned_cols=82 Identities=29% Similarity=0.519 Sum_probs=76.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||.|.+.++|..|+. ++..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3455799999999999999999999999999999999999 99999999999999999999996 99999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98653
No 325
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=122.10 Aligned_cols=81 Identities=28% Similarity=0.430 Sum_probs=72.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+++++|+.+|+.||.|..+ . .++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456799999999999999999999999987665 2 2788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987643
No 326
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=124.07 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCCCCCeEEE--eCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc-
Q 037049 611 DRVESRSLFV--KNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL- 687 (731)
Q Consensus 611 ~~~~~~~L~V--~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i- 687 (731)
...++.+||| .||+..+|+++|+++|++||. |..|.|+. .||||||+|.+.++|.+|+..|||..|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~---v~~v~i~~--------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGL---VDALLMPP--------NKPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSC---EEEEECCT--------TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCC---eEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 4456788999 559999999999999999999 99988763 489999999999999999999999988
Q ss_pred ----CCcEEEEEeccCCc
Q 037049 688 ----DGHALILQLCHAKK 701 (731)
Q Consensus 688 ----~Gr~l~v~~ak~~~ 701 (731)
.|++|.|.||+...
T Consensus 90 ~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 90 DDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp CTTSCEEECEEEEESCCC
T ss_pred cccCCCcEEEEEecccCc
Confidence 79999999998654
No 327
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=116.44 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=64.6
Q ss_pred eEEEeCCCCCCCHHH----HHHHhhcC-CCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 2 RICVKNLPKYVTEDR----LRDFFSQK-GEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 2 ~l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
.|||+|||+.+++++ |+++|++| |+|.+|. .|+|||.|.+.++|++|++.|+|..+.|++|+|.+|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 489999999999998 45899999 5999981 299999999999999999999999999999999999
Q ss_pred ccCCC
Q 037049 77 RKVGD 81 (731)
Q Consensus 77 ~~~~~ 81 (731)
+.+.+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 97654
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.51 E-value=2.9e-14 Score=119.31 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
..++|||+|||..+|+++|+++|++| + |..++|. . ++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~---v~~~~i~--~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-D---LKYCYVD--R------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-C---CCCEEEE--G------GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-C---eEEEEEe--C------CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 45789999999999999999999999 8 9999985 2 899999999999999999999999999999999
Q ss_pred EEeccCCc
Q 037049 694 LQLCHAKK 701 (731)
Q Consensus 694 v~~ak~~~ 701 (731)
|.+|+.+.
T Consensus 72 V~~a~~~~ 79 (88)
T 1wg1_A 72 VQLQPTDA 79 (88)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 99997653
No 329
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=135.09 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=78.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEE--------EEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILS--------VKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ 683 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~--------vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln 683 (731)
..+.++|||+|||..+|+++|+++|+.||. |.. |+|+.++.++. ++|||||.|.+.++|.+|+..||
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~~~~~~~~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGI---IKTNKKTGQPMINLYTDRETGK--LKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 345678999999999999999999999999 998 88998865544 89999999999999999999999
Q ss_pred CCccCCcEEEEEeccCCchh
Q 037049 684 GTILDGHALILQLCHAKKDE 703 (731)
Q Consensus 684 g~~i~Gr~l~v~~ak~~~~~ 703 (731)
|..|.|++|.|.+|+++...
T Consensus 79 g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999999988653
No 330
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=1.3e-14 Score=128.97 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEE--EEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC
Q 037049 611 DRVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRIL--SVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~--~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~ 688 (731)
.....++|||+|||+.+|+++|+++|+.| . |. .|+|+.++. ++++|||||+|.+.++|.+||.. ++..|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~---i~~~~v~i~~d~~---GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-E---IVPNGITLPVDPE---GKITGEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-C---EEEEEEECCCCSS---SSSCSEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-C---ceeeEEEEEECCC---CCCceEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 34466789999999999999999999999 6 77 899999863 45999999999999999999994 789999
Q ss_pred CcEEEEEeccCCc
Q 037049 689 GHALILQLCHAKK 701 (731)
Q Consensus 689 Gr~l~v~~ak~~~ 701 (731)
||+|.|..+.+++
T Consensus 110 gR~I~V~~a~~~e 122 (126)
T 2hgm_A 110 HRYIEVFKSSQEE 122 (126)
T ss_dssp TBCCCCEEECHHH
T ss_pred CEEEEEEECCHHH
Confidence 9999999987553
No 331
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=7.6e-14 Score=123.45 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=67.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--ceeEEEeecc
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQF-AFIGFRTEQEAEEAIKYFNKSYLDT--CRISCEIARK 78 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~ai~~~~g~~~~g--~~i~v~~a~~ 78 (731)
+|||+|||+.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.+|++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 5899999999999999999999999999999763 386 9999999999999999999999987 6899999997
Q ss_pred CC
Q 037049 79 VG 80 (731)
Q Consensus 79 ~~ 80 (731)
..
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=121.55 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCC-CccCCc
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQG-TILDGH 690 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng-~~i~Gr 690 (731)
..+.++|||+|||..+|+++|+++|..||. |+...++. ++|||||+|.+.++|.+|+..||| ..|.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---vv~~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKL---PLAGQVLL--------KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTC---CCSSCEEE--------ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCC---ceEEEEEc--------CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 345678999999999999999999999998 55543332 689999999999999999999999 999999
Q ss_pred EEEEEeccCCch
Q 037049 691 ALILQLCHAKKD 702 (731)
Q Consensus 691 ~l~v~~ak~~~~ 702 (731)
+|.|.+|+++..
T Consensus 74 ~l~v~~a~~~~~ 85 (93)
T 2cqh_A 74 IMEVDYSVSKKL 85 (93)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCccc
Confidence 999999988754
No 333
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=119.15 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=66.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD-GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|||+++|+++|+.+|++||.|.+| +.++. |+ ||||+|.+.++|.+||. |||..++|+.|+|.++.++
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 379999999999999999999999999987 55544 44 99999999999999999 9999999999999988754
Q ss_pred C
Q 037049 80 G 80 (731)
Q Consensus 80 ~ 80 (731)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 334
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=3.3e-14 Score=125.42 Aligned_cols=73 Identities=16% Similarity=0.331 Sum_probs=67.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce-----eEEEe
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCR-----ISCEI 75 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~-----i~v~~ 75 (731)
++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+|+. |+|..
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 47999999999999999999999999999999886 99999999999999999999999999998 77777
Q ss_pred eccC
Q 037049 76 ARKV 79 (731)
Q Consensus 76 a~~~ 79 (731)
+.+.
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6653
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.50 E-value=5.4e-14 Score=117.75 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc--CC
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL--DG 689 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i--~G 689 (731)
..+.++|||+|||+.+|+++|+++|++||. |.+|+|+.+ +||||||+|.+.++|.+ ++|..+ .|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~---i~~v~i~~~-------srGfaFV~F~~~~~A~~----~~~~~~~~~g 73 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGE---VVDVFIPKP-------FRAFAFVTFADDKVAQS----LCGEDLIIKG 73 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSC---EEEEECCSS-------CCSEEEEEESCHHHHHH----HTTCEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC---EEEEEEeeC-------CCCEEEEEECCHHHHHH----HcCCCcccCC
Confidence 456789999999999999999999999999 999999974 79999999999999983 556554 69
Q ss_pred cEEEEEeccCCch
Q 037049 690 HALILQLCHAKKD 702 (731)
Q Consensus 690 r~l~v~~ak~~~~ 702 (731)
++|.|.+|.++..
T Consensus 74 ~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 74 ISVHISNAEPKHN 86 (89)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEEEcCCCCc
Confidence 9999999998754
No 336
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.5e-13 Score=118.46 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCC-----CCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 613 VESRSLFVKNLNF-----KTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 613 ~~~~~L~V~NLp~-----~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
.++++|+|+||.. .-++++|+++|++||. |.+|+|+.++.+ .+.++|||||+|.+.++|.+|+..|||+.+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~---V~~v~i~~~~~~-~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGK---VGKCVIFEIPGA-PDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSC---EEEEEEEECSSC-CTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCC---EEEEEEecCCCC-CCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4678999999973 2378999999999999 999999987632 234899999999999999999999999999
Q ss_pred CCcEEEEEeccC
Q 037049 688 DGHALILQLCHA 699 (731)
Q Consensus 688 ~Gr~l~v~~ak~ 699 (731)
.||+|.|.|+..
T Consensus 82 ~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 GGRVVKACFYNL 93 (105)
T ss_dssp TTEECEEEECCH
T ss_pred CCcEEEEEEcCH
Confidence 999999999965
No 337
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=7.9e-14 Score=122.06 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCCCC-CCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 613 VESRSLFVKNLNFK-TCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 613 ~~~~~L~V~NLp~~-~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
...++|||+|||.. +|+++|+++|..||. |..|+| ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~---v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGR---VAGCSV----------HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSC---CSEEEE----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCC---eEEEEE----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34578999999999 999999999999999 999988 3789999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 037049 692 LILQLCHAKK 701 (731)
Q Consensus 692 l~v~~ak~~~ 701 (731)
|.|.+|++..
T Consensus 92 l~V~~a~~~~ 101 (110)
T 1wf1_A 92 LDINMAGEPK 101 (110)
T ss_dssp CCEEESCCCC
T ss_pred EEEEECCCCC
Confidence 9999998543
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=6.1e-14 Score=133.53 Aligned_cols=83 Identities=23% Similarity=0.421 Sum_probs=78.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...+++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred cCCC
Q 037049 375 ARHK 378 (731)
Q Consensus 375 a~~~ 378 (731)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9853
No 339
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=8.1e-14 Score=116.59 Aligned_cols=79 Identities=27% Similarity=0.396 Sum_probs=73.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCccc
Q 037049 492 RSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDVLS 571 (731)
Q Consensus 492 ~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 571 (731)
...++|||+|||..+++++|+++|++| .|..+.+.+++|||||+|.+.++|.+|+..|||..+.|++|.|.|++.+...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 81 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALL 81 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCceE
Confidence 346789999999999999999999999 9999988889999999999999999999999999999999999999876543
No 340
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.8e-14 Score=118.83 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEV-HIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i-~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
...++|||+|||+.+++++|+.+|+.||.|..| .|+.++.+ |.|||.|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999 48877644 3499999999999999999999999999999999
Q ss_pred cCCCC
Q 037049 375 ARHKK 379 (731)
Q Consensus 375 a~~~~ 379 (731)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 341
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=2.6e-13 Score=120.05 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=67.4
Q ss_pred EEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccE-EEEEeCCHHHHHHHHHHhCCCccCC--cEEEE
Q 037049 618 LFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGF-GFIEFDSVETATNVCRDLQGTILDG--HALIL 694 (731)
Q Consensus 618 L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~-afV~F~s~e~A~~Ai~~lng~~i~G--r~l~v 694 (731)
|||.|||+.+|+++|+++|+.||. |.+|+|+. + .|| |||+|.+.++|..|+..|||..|.| ++|+|
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~---V~~v~i~~-~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGK---VQRIVIFK-R-------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSC---EEEEEEEE-S-------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCC---EEEEEEEe-C-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 689999999999999999999999 99999964 2 286 9999999999999999999999988 69999
Q ss_pred EeccCCc
Q 037049 695 QLCHAKK 701 (731)
Q Consensus 695 ~~ak~~~ 701 (731)
.||+++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9999885
No 342
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.5e-14 Score=131.19 Aligned_cols=83 Identities=28% Similarity=0.378 Sum_probs=75.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEe
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMP 374 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~ 374 (731)
....++|||+|||+.+|+++|+++|+.|| |..|.|+.|+ +|+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999 7799999998 5999999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 037049 375 ARHKKS 380 (731)
Q Consensus 375 a~~~~~ 380 (731)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 886543
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=9.1e-14 Score=116.03 Aligned_cols=68 Identities=26% Similarity=0.540 Sum_probs=64.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQK----G-------EITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTC 69 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~ 69 (731)
++|||+|||+++++++|+++|++| | .|.+|+++++ +|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 479999999999999999999999 8 9999999876 799999999999999999 8999999999
Q ss_pred eeEEE
Q 037049 70 RISCE 74 (731)
Q Consensus 70 ~i~v~ 74 (731)
.|+|+
T Consensus 81 ~l~V~ 85 (87)
T 2hzc_A 81 SLKIR 85 (87)
T ss_dssp ECEEE
T ss_pred EEEEe
Confidence 99997
No 344
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.7e-13 Score=114.17 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=72.3
Q ss_pred CcCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCCCCc
Q 037049 490 LKRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAPSDV 569 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 569 (731)
...+.++|||+|| .+++++|+++|++||.|..|.+.+++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+....
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 4456789999996 88999999999999999999999999999999999999999999999999999999999997543
No 345
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=116.05 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 037049 613 VESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHAL 692 (731)
Q Consensus 613 ~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l 692 (731)
...++|||+|||..+|+++|+++|..||. |..| +.+..++ + ||||+|.+.++|.+|+. |||..|.|++|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~v--~~~~~~g----~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGP---VASV--VMDKDKG----V-FAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSC---EEEE--EECSSSC----C-EEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC---eEEE--EEcCCCC----c-EEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 35568999999999999999999999999 9987 4443232 2 99999999999999999 99999999999
Q ss_pred EEEeccCCch
Q 037049 693 ILQLCHAKKD 702 (731)
Q Consensus 693 ~v~~ak~~~~ 702 (731)
.|.+|.++..
T Consensus 75 ~V~~a~~~~~ 84 (94)
T 2e5g_A 75 RVRPREQKEF 84 (94)
T ss_dssp CCBCSCCSCC
T ss_pred EEEECCcCCC
Confidence 9999987754
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=2.2e-13 Score=131.61 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=71.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeecc
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARK 78 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~ 78 (731)
++|||+|||+++|+++|+++|++||.|..|+|+++..|+++|||||+|.+.++|.+||..+ +..+.|+.|+|.++..
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999988999999999999999999999854 5689999999998774
No 347
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.8e-14 Score=117.52 Aligned_cols=75 Identities=28% Similarity=0.378 Sum_probs=64.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccCC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKVG 80 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~~ 80 (731)
++|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.++.++.
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 58999999999999999999999999999999875 689999999999999764321 234579999999998754
Q ss_pred C
Q 037049 81 D 81 (731)
Q Consensus 81 ~ 81 (731)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=1.8e-13 Score=120.69 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=66.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE--
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA-- 691 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~-- 691 (731)
..++|||.|||+.+|+++|+++|..||. |..|+|+.+ |||||+|.+.++|.+||+.|||..|.|++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGD---VCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSC---EEEEEECTT---------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEecC---------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4578999999999999999999999999 999999763 89999999999999999999999999999
Q ss_pred ---EEEEeccCCc
Q 037049 692 ---LILQLCHAKK 701 (731)
Q Consensus 692 ---l~v~~ak~~~ 701 (731)
|.|..+.++.
T Consensus 83 ~~~i~v~~~~~~~ 95 (115)
T 3beg_B 83 TAYIRVKVDGPRS 95 (115)
T ss_dssp CCBCEEEECC---
T ss_pred eEEEEeccCCCCC
Confidence 7888777653
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=121.22 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=65.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEee
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD----GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIA 76 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a 76 (731)
++|||+|||+++|+++|+++|++||.|. +.++.++. |+++|||||+|.+.++|++||+.|++ ++|+.|.+..+
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~ 85 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSS 85 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccC
Confidence 4799999999999999999999999999 88888765 68999999999999999999998843 67777777654
Q ss_pred c
Q 037049 77 R 77 (731)
Q Consensus 77 ~ 77 (731)
.
T Consensus 86 ~ 86 (114)
T 2dnl_A 86 P 86 (114)
T ss_dssp S
T ss_pred C
Confidence 4
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=119.55 Aligned_cols=77 Identities=26% Similarity=0.397 Sum_probs=65.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCC---CCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEE
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDT---KRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHV 372 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V 372 (731)
...++|||+|||+.+++++|+++|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567999999999999999999999999999 888888766 7999999999999999999999883 245555555
Q ss_pred Eec
Q 037049 373 MPA 375 (731)
Q Consensus 373 ~~a 375 (731)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 443
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.3e-13 Score=116.42 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCC--CC--------CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHh
Q 037049 613 VESRSLFVKNLNF--KT--------CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL 682 (731)
Q Consensus 613 ~~~~~L~V~NLp~--~~--------tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~l 682 (731)
.|+++|.|+|+-. .+ .+++|++.|++||. |.+|+|+++..++.+.++|||||+|.+.++|.+|+..|
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~---V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGL---VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSC---EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCC---EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 4788999999833 33 24799999999999 99999999874433458999999999999999999999
Q ss_pred CCCccCCcEEEEEeccCC
Q 037049 683 QGTILDGHALILQLCHAK 700 (731)
Q Consensus 683 ng~~i~Gr~l~v~~ak~~ 700 (731)
||+.+.||+|.|.|+...
T Consensus 80 nG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 80 TGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp TTCEETTEECEEEEECHH
T ss_pred CCCEeCCCEEEEEEeCHH
Confidence 999999999999998543
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=3.4e-13 Score=119.78 Aligned_cols=72 Identities=26% Similarity=0.400 Sum_probs=67.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|.+||..|||..+.|+.|+|.++.+.
T Consensus 40 ~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 40 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57999996 69999999999999999999986 45899999999999999999999999999999999999864
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=4.2e-13 Score=111.96 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=68.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhccc----C-------ceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCce
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKF----G-------SLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVP 559 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~----G-------~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~ 559 (731)
..+.++|||+|||..+++++|+++|++| | .|..+.+.+++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 3457899999999999999999999999 8 8999999999999999999999999999 99999999999
Q ss_pred EEEEe
Q 037049 560 LYLEW 564 (731)
Q Consensus 560 l~v~~ 564 (731)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=8.5e-13 Score=113.75 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=73.5
Q ss_pred cCCCCeEEEeCCCC-----CCCHHHHHHHHhcCCCeeEEEEeeeCCC-CCceeEEEEEecCHHHHHHHHHHcCCcccCCe
Q 037049 295 VLESGRLFVRNLPY-----TATEDELREHFSKFGNVSEVHIVVDKDT-KRSKGIAYVLYAIPESASRAIEVLDNSIFQGR 368 (731)
Q Consensus 295 ~~~~~~l~v~nLp~-----~~t~~~l~~~F~~~G~i~~i~i~~d~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~ 368 (731)
..++++|+|+||.. .-++++|+++|++||.|.+|.|++++.+ +.++|||||.|.+.++|.+|+..|||..|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34567999999973 2378999999999999999999998654 68899999999999999999999999999999
Q ss_pred EEEEEecCC
Q 037049 369 LLHVMPARH 377 (731)
Q Consensus 369 ~l~V~~a~~ 377 (731)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999873
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=4.5e-13 Score=119.00 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 037049 612 RVESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHA 691 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~ 691 (731)
..+.++|||+|| .+|+++|+++|+.||. |.+|+|.. ++|||||.|.+.++|.+|+..|||..|.|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~---I~~v~i~~--------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGN---IIDLSMDP--------PRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCC---CSCEEEET--------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCC---EEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 346788999996 6999999999999999 99999862 7999999999999999999999999999999
Q ss_pred EEEEeccCCch
Q 037049 692 LILQLCHAKKD 702 (731)
Q Consensus 692 l~v~~ak~~~~ 702 (731)
|.|.||+++..
T Consensus 103 l~V~~a~~~~~ 113 (121)
T 2bz2_A 103 LKVNIARKQPM 113 (121)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEeCCCCC
Confidence 99999998754
No 356
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.4e-13 Score=115.07 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALI 693 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~ 693 (731)
+.++|||+|||..+|+++|+++|..||. |..|+|+.+ ++|||||+|.+.++|.+|+.. ...+.|++|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~-------~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGD---VMDVFIPKP-------FRAFAFVTFADDQIAQSLCGE--DLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSC---CCEEECCSS-------CCSCCEEECSCHHHHHHTTTC--EEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCC---eeEEEEecC-------CCCEEEEEECCHHHHHHHhcC--CceeCCEEEE
Confidence 5678999999999999999999999999 999999864 799999999999999865332 3455999999
Q ss_pred EEeccCCch
Q 037049 694 LQLCHAKKD 702 (731)
Q Consensus 694 v~~ak~~~~ 702 (731)
|.+|+++..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999998865
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.1e-12 Score=115.12 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=71.4
Q ss_pred CCCCCCeEEEeCCCCCCC-----------HHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHH
Q 037049 611 DRVESRSLFVKNLNFKTC-----------DENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVC 679 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~~t-----------ee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai 679 (731)
...++++|+|+||....+ +++|+++|.+||. |..|.| .+. . ++|||||+|.+.++|.+|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~---v~~v~i-~~~---~--~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQ---IRKLLL-FDR---H--PDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSC---CSEEEE-ETT---C--TTCEEEEECSCHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCC---EeEEEE-ecC---C--CCEEEEEEECCHHHHHHHH
Confidence 455778899999954432 6899999999999 999966 332 1 7999999999999999999
Q ss_pred HHhCCCccCCcEEEEEeccCCch
Q 037049 680 RDLQGTILDGHALILQLCHAKKD 702 (731)
Q Consensus 680 ~~lng~~i~Gr~l~v~~ak~~~~ 702 (731)
..|||+.|.||+|.|.||.++.+
T Consensus 82 ~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 82 QTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHSTTCEETTEECEEEECCSCCC
T ss_pred HHcCCCEECCcEEEEEEeCCCCC
Confidence 99999999999999999988754
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=5.9e-13 Score=131.36 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=68.9
Q ss_pred CeEEEeCCCCCC---------CHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-----
Q 037049 1 SRICVKNLPKYV---------TEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYL----- 66 (731)
Q Consensus 1 s~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~----- 66 (731)
++|||+|||..+ ++++|+.+|++||.|.+|+|+.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 479999999998 79999999999999999999975 89999999999999999999999999
Q ss_pred -------CCceeEEEeeccCC
Q 037049 67 -------DTCRISCEIARKVG 80 (731)
Q Consensus 67 -------~g~~i~v~~a~~~~ 80 (731)
.|+.|.|.+|++..
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.9e-13 Score=117.79 Aligned_cols=72 Identities=18% Similarity=0.385 Sum_probs=64.8
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 037049 5 VKNLPKYVTEDRLRDFF------------SQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRIS 72 (731)
Q Consensus 5 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~ 72 (731)
+.|||+.+++++|+++| ++||.|.+|+|++++.|+++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 35667777888777666 999999999999988899999999999999999999999999999999999
Q ss_pred EEee
Q 037049 73 CEIA 76 (731)
Q Consensus 73 v~~a 76 (731)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.37 E-value=1.9e-12 Score=125.05 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCCeEEEEEec
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQGRLLHVMPA 375 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g~~l~V~~a 375 (731)
...++|||+|||+.+++++|+.+|+.||.|..|+|+++. +|.++|||||+|.+.++|..|+..+ +..+.|+.|.|.++
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFK 184 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEET
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEh
Confidence 345799999999999999999999999999999999988 6999999999999999999999655 56999999999998
Q ss_pred CC
Q 037049 376 RH 377 (731)
Q Consensus 376 ~~ 377 (731)
..
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 74
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=1.1e-12 Score=129.53 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCCCeEEEeCCCCCC---------CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHh
Q 037049 612 RVESRSLFVKNLNFKT---------CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDL 682 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~---------tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~l 682 (731)
....++|||+|||..+ |+++|+++|++||+ |.+|+|+. ++|||||.|.+.++|..|+..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~---I~~v~v~~--------~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD---IDRIRYVE--------SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC---EEEEEEEG--------GGTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC---EEEEEEEC--------CCCEEEEEeCCHHHHHHHHHHh
Confidence 3467899999999998 79999999999999 99999985 6899999999999999999999
Q ss_pred CCCcc------------CCcEEEEEeccCCch
Q 037049 683 QGTIL------------DGHALILQLCHAKKD 702 (731)
Q Consensus 683 ng~~i------------~Gr~l~v~~ak~~~~ 702 (731)
||..| .|+.|.|.||+.+..
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 99999 999999999987654
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=3.4e-12 Score=112.13 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCC--C---CHHHHHHHhccccCcccEEEEEEeeecCC--CCcccccEEEEEeCCHHHHHHHHHHhCCCc
Q 037049 614 ESRSLFVKNLNFK--T---CDENLRKHFGEHIKEGRILSVKVKKHLKN--GKNVSMGFGFIEFDSVETATNVCRDLQGTI 686 (731)
Q Consensus 614 ~~~~L~V~NLp~~--~---tee~L~~~F~~~G~~~~I~~vki~~~~~~--~~~~~kG~afV~F~s~e~A~~Ai~~lng~~ 686 (731)
++++|+|+|+-.. + .+++|++.|++||. |.+|+|+.+..+ +.+.++|||||+|.+.++|.+|+..|||+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~---V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA---VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSC---EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCC---EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 6789999999532 2 36899999999999 999999998732 244578999999999999999999999999
Q ss_pred cCCcEEEEEeccC
Q 037049 687 LDGHALILQLCHA 699 (731)
Q Consensus 687 i~Gr~l~v~~ak~ 699 (731)
+.||+|.|.|+..
T Consensus 96 f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGRKVVAEVYDQ 108 (118)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCcEEEEEEcCh
Confidence 9999999999854
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.8e-11 Score=107.28 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=70.5
Q ss_pred cCCCCeEEEeCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCc
Q 037049 295 VLESGRLFVRNLPYTAT-----------EDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNS 363 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t-----------~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~ 363 (731)
...+++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||.|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999954432 5799999999999999965 544 37999999999999999999999999
Q ss_pred ccCCeEEEEEecCCCCC
Q 037049 364 IFQGRLLHVMPARHKKS 380 (731)
Q Consensus 364 ~~~g~~l~V~~a~~~~~ 380 (731)
.|.|+.|.|.++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999987543
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.2e-12 Score=111.03 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=62.1
Q ss_pred EeCCCCCCCHHHHHHHh------------ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 620 VKNLNFKTCDENLRKHF------------GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 620 V~NLp~~~tee~L~~~F------------~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
+.|||..+|+++|+++| ++||. |.+|+|+++. . +.++|||||.|.+.++|.+|+..|||+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~---V~~v~i~~~~-~--~~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGE---VEEMNVCDNL-G--DHLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---EEEEEECCSS-S--SSSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCc---eEEEEEEeCC-C--CCccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 44566667777777666 99999 9999999875 2 35899999999999999999999999999
Q ss_pred CCcEEEEEecc
Q 037049 688 DGHALILQLCH 698 (731)
Q Consensus 688 ~Gr~l~v~~ak 698 (731)
.||+|.|.|+.
T Consensus 94 ~Gr~i~v~~sp 104 (104)
T 1jmt_A 94 NGQPIHAELSP 104 (104)
T ss_dssp TTEECCEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999973
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.3e-11 Score=106.38 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=70.3
Q ss_pred CCCeEEEeCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeeeCCC--CCceeEEEEEecCHHHHHHHHHHcCCcc
Q 037049 297 ESGRLFVRNL--PYTAT--------EDELREHFSKFGNVSEVHIVVDKDT--KRSKGIAYVLYAIPESASRAIEVLDNSI 364 (731)
Q Consensus 297 ~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~i~~i~i~~d~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~ 364 (731)
+++.|.|.|+ |..+. +++|++.|++||.|.+|.|++++.+ +.++|||||.|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 44443 3689999999999999999988754 3679999999999999999999999999
Q ss_pred cCCeEEEEEecC
Q 037049 365 FQGRLLHVMPAR 376 (731)
Q Consensus 365 ~~g~~l~V~~a~ 376 (731)
|.||.|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999986
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=3.6e-11 Score=105.58 Aligned_cols=80 Identities=28% Similarity=0.364 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCC--CC---CHHHHHHHHhcCCCeeEEEEeeeCC----CCCceeEEEEEecCHHHHHHHHHHcCCcccCC
Q 037049 297 ESGRLFVRNLPY--TA---TEDELREHFSKFGNVSEVHIVVDKD----TKRSKGIAYVLYAIPESASRAIEVLDNSIFQG 367 (731)
Q Consensus 297 ~~~~l~v~nLp~--~~---t~~~l~~~F~~~G~i~~i~i~~d~~----~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g 367 (731)
++++|+|+|+-. .+ -+++|++.|++||.|.+|.|++++. ++.++|||||.|.+.++|.+|+..|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 677999999942 22 3689999999999999999999864 35678999999999999999999999999999
Q ss_pred eEEEEEecC
Q 037049 368 RLLHVMPAR 376 (731)
Q Consensus 368 ~~l~V~~a~ 376 (731)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999986
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.2e-11 Score=101.17 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeeccC
Q 037049 10 KYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIARKV 79 (731)
Q Consensus 10 ~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~~~ 79 (731)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|..||..+++ +.|++|+|.++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999998 36799999999999999999997544 67999999999864
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=3.1e-11 Score=105.27 Aligned_cols=80 Identities=13% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCCCCeEEEeCCCCCC----------CHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHH
Q 037049 612 RVESRSLFVKNLNFKT----------CDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681 (731)
Q Consensus 612 ~~~~~~L~V~NLp~~~----------tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ 681 (731)
..++++|.|+|+-... .+++|++.|++||. |.+|.|+++. ++|||||+|.+.++|.+|+..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~---V~~v~i~~~~------~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGG---VIHIYVDKNS------AQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTC---CSEEEECTTC------TTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCC---EEEEEEecCC------CcEEEEEEECCHHHHHHHHHH
Confidence 3467889999985433 24688999999999 9999997653 699999999999999999999
Q ss_pred hCCCccCCcEEEEEeccCC
Q 037049 682 LQGTILDGHALILQLCHAK 700 (731)
Q Consensus 682 lng~~i~Gr~l~v~~ak~~ 700 (731)
|||+.+.||.|.|.|+...
T Consensus 75 lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 75 LHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HTTCEETTEECEEEEECHH
T ss_pred hCCCEECCEEEEEEEEcHH
Confidence 9999999999999999644
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=99.11 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 615 SRSLFVKNLN-------FKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 615 ~~~L~V~NLp-------~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
...|.|+-.+ ..+|+++|+++|++||. |..|.|+. .++|||||+|.+.++|.+|+..+++ +
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~---V~~v~i~~-------~~rGfaFVeF~~~~~A~~Ai~~~~~--~ 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGE---VLNLVLSS-------KKPGTAVVEFATVKAAELAVQNEVG--L 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSC---EEEEEEES-------SSSSEEEEEESCHHHHHHHHHTCCB--C
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCC---EEEEEEcc-------CCCCEEEEEECCHHHHHHHHHhcCC--C
Confidence 4467777654 46899999999999999 99999983 2899999999999999999998555 6
Q ss_pred CCcEEEEEeccCCch
Q 037049 688 DGHALILQLCHAKKD 702 (731)
Q Consensus 688 ~Gr~l~v~~ak~~~~ 702 (731)
.|++|+|.||+.+..
T Consensus 78 ~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 78 VDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSBCEEECSSCCCC
T ss_pred CCCeEEEEEccCCCC
Confidence 899999999987753
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.4e-10 Score=101.16 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=68.4
Q ss_pred cCCCcEEEEeCCCCCCC----------HHHHHHHhcccCceeEEEccC--CCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 037049 491 KRSNHVFLVKNLPYDSS----------EGELAKMFGKFGSLDKVILPS--TKTLALVVFLEPVEAAAAFKGLAYKRYKGV 558 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~t----------e~~L~~~F~~~G~i~~v~l~~--~kg~afV~F~~~e~A~~Ai~~lng~~~~gr 558 (731)
..++++|.++||-.... +++|+++|++||.|.+|.|.+ .+|+|||+|.+.++|.+|+..|||+.|.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45678999999954322 368899999999999999986 479999999999999999999999999999
Q ss_pred eEEEEeCCCCc
Q 037049 559 PLYLEWAPSDV 569 (731)
Q Consensus 559 ~l~v~~a~~~~ 569 (731)
.|.|.|++...
T Consensus 84 ~i~v~~~~~~~ 94 (114)
T 3s6e_A 84 MITAAYVPLPT 94 (114)
T ss_dssp ECEEEEECHHH
T ss_pred EEEEEEEcHHH
Confidence 99999997544
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=1.2e-10 Score=121.19 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=68.1
Q ss_pred CCCCCCeEEEeC--CCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc-
Q 037049 611 DRVESRSLFVKN--LNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL- 687 (731)
Q Consensus 611 ~~~~~~~L~V~N--Lp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i- 687 (731)
...++.+|||.| |++.+|+++|+++|++||. |.+|.|.. +||||||+|.+.++|.+|+..|||..+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~---V~~v~~~~--------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGL---VDALLMPP--------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC---EEEEECCT--------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC---eEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 466888999999 5889999999999999999 99887653 589999999999999999999999988
Q ss_pred --CCc--EEEEEecc
Q 037049 688 --DGH--ALILQLCH 698 (731)
Q Consensus 688 --~Gr--~l~v~~ak 698 (731)
.|+ +|.|.|++
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 355 68889985
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=2e-10 Score=119.52 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=69.8
Q ss_pred CcCCCcEEEEeC--CCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccC---Cc--eEEE
Q 037049 490 LKRSNHVFLVKN--LPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYK---GV--PLYL 562 (731)
Q Consensus 490 ~~~~~~~l~V~N--Lp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~---gr--~l~v 562 (731)
...+..+|||+| |++.+++++|+++|++||.|.+|.++++||||||+|.+.++|.+||..|||..+- |+ .|+|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 355678999999 5788999999999999999999999999999999999999999999999999873 44 7899
Q ss_pred EeCCC
Q 037049 563 EWAPS 567 (731)
Q Consensus 563 ~~a~~ 567 (731)
.|+..
T Consensus 94 ~~~~~ 98 (345)
T 3tht_A 94 NFVEK 98 (345)
T ss_dssp EECSS
T ss_pred EEeec
Confidence 99853
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=88.21 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCCCCeEEEeCCC----CCCCH----HHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhC
Q 037049 612 RVESRSLFVKNLN----FKTCD----ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQ 683 (731)
Q Consensus 612 ~~~~~~L~V~NLp----~~~te----e~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ln 683 (731)
.++..||+|...| ..+-+ .+|.+.|..||. |+.++|..++ +||+|.+.++|.+||. ||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~---Vi~vr~~~d~----------~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGE---VILIRFVEDK----------MWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCC---EEEEEECSSS----------EEEEESSHHHHHHGGG-GT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCC---eEEEEEecCC----------EEEEECChHHHHHHHh-cC
Confidence 4577889998887 34444 778999999998 9999999874 9999999999999998 99
Q ss_pred CCccCCcEEEEEeccCC
Q 037049 684 GTILDGHALILQLCHAK 700 (731)
Q Consensus 684 g~~i~Gr~l~v~~ak~~ 700 (731)
|..|.||.|+|.++.+.
T Consensus 70 G~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 70 GKELLNRTITIALKSPS 86 (91)
T ss_dssp TCEETTEEEEEEECCCS
T ss_pred CeEeCCeEEEEEeCCCC
Confidence 99999999999999865
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=4.2e-09 Score=91.63 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeCCCCC-CCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCC-HHHHHHHHHHhC--CCc
Q 037049 611 DRVESRSLFVKNLNFK-TCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDS-VETATNVCRDLQ--GTI 686 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~-~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s-~e~A~~Ai~~ln--g~~ 686 (731)
...+++.|||.||+.. +++++|+++|+.||+ |.+|.+..+.. .|||.|.+ ..+|..|+..|| +..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~---V~~Vd~~~g~~--------tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGE---IKWIDFVRGAK--------EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCC---EEEEECCTTCS--------EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCC---EEEEEEecCCC--------EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 5668899999999999 999999999999999 99999988642 49999999 899999999995 899
Q ss_pred cCCcEEEEEeccCCchh
Q 037049 687 LDGHALILQLCHAKKDE 703 (731)
Q Consensus 687 i~Gr~l~v~~ak~~~~~ 703 (731)
|.|..+.+.+....++.
T Consensus 83 i~g~~~~~evL~GeeE~ 99 (121)
T 1owx_A 83 LRNKEVTWEVLEGEVEK 99 (121)
T ss_dssp TTSSSEEEEECCHHHHH
T ss_pred EeCcEEEEEECCCHHHH
Confidence 99999999998877654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=2.1e-08 Score=87.22 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=70.7
Q ss_pred CcCCCcEEEEeCCCCC-CCHHHHHHHhcccCceeEEEccCCCCEEEEEeCC-HHHHHHHHHhcC--CCccCCceEEEEeC
Q 037049 490 LKRSNHVFLVKNLPYD-SSEGELAKMFGKFGSLDKVILPSTKTLALVVFLE-PVEAAAAFKGLA--YKRYKGVPLYLEWA 565 (731)
Q Consensus 490 ~~~~~~~l~V~NLp~~-~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~-~e~A~~Ai~~ln--g~~~~gr~l~v~~a 565 (731)
....++.|+|.||+.. ++.++|+++|+.||.|..|.+.+....|||.|.+ ..+|..|+..|| |..|.|..+.++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 5667899999999999 9999999999999999999999888899999999 899999999994 78899999888876
Q ss_pred C
Q 037049 566 P 566 (731)
Q Consensus 566 ~ 566 (731)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=2e-08 Score=81.63 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=64.2
Q ss_pred cCCCcEEEEeCCC----CCCCH----HHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEE
Q 037049 491 KRSNHVFLVKNLP----YDSSE----GELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYL 562 (731)
Q Consensus 491 ~~~~~~l~V~NLp----~~~te----~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v 562 (731)
.++..+|+|...+ .++-. .+|.+.|.+||.|..+++...+ +||+|.+.++|.+|+. |||..+.||.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 4456688888876 23333 6799999999999999987655 8999999999999998 9999999999999
Q ss_pred EeCCCCc
Q 037049 563 EWAPSDV 569 (731)
Q Consensus 563 ~~a~~~~ 569 (731)
.++..+.
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9998654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.9e-08 Score=82.01 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCCCCeEEEeCCCCC-----CCH----HHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHH
Q 037049 611 DRVESRSLFVKNLNFK-----TCD----ENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRD 681 (731)
Q Consensus 611 ~~~~~~~L~V~NLp~~-----~te----e~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~ 681 (731)
..+|..||+|..++.. +-+ .+|.+.|..||. |+.+++..++ +||+|.+.++|.+||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~---Vilvr~v~d~----------~fVtF~d~~sAl~AI~- 76 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGT---IVLVRINQGQ----------MLVTFADSHSALSVLD- 76 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSC---CSEEEEETTE----------EEEECSCSHHHHHHHH-
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCC---EEEEEEecCc----------EEEEEcChHHHHHHHh-
Confidence 5678889999998743 433 668899999998 9999999874 9999999999999999
Q ss_pred hCCCccCCcEEEEEeccC
Q 037049 682 LQGTILDGHALILQLCHA 699 (731)
Q Consensus 682 lng~~i~Gr~l~v~~ak~ 699 (731)
|||..|.||.|+|.+..+
T Consensus 77 ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 77 VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp GGGSEETTEEEEEECCCC
T ss_pred cCCeeeCCeEEEEeccCC
Confidence 999999999999998643
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=1.1e-07 Score=93.93 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=69.3
Q ss_pred CCCCCeEEEeCCCC-----CCCHHHHHHHhccccCcccEEEEEEeeecCC--CCcccccEEEEEeCCHHHHHHHHHHhCC
Q 037049 612 RVESRSLFVKNLNF-----KTCDENLRKHFGEHIKEGRILSVKVKKHLKN--GKNVSMGFGFIEFDSVETATNVCRDLQG 684 (731)
Q Consensus 612 ~~~~~~L~V~NLp~-----~~tee~L~~~F~~~G~~~~I~~vki~~~~~~--~~~~~kG~afV~F~s~e~A~~Ai~~lng 684 (731)
......+.+.|+-. .-.+++|++.|.+||. |.+++|+.+..+ ..+.++|++||+|.+.++|.+|+..|||
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~---v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g 197 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA---VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 197 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC---EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCC---eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC
Confidence 33445677777643 2356899999999999 999999977632 2335899999999999999999999999
Q ss_pred CccCCcEEEEEeccC
Q 037049 685 TILDGHALILQLCHA 699 (731)
Q Consensus 685 ~~i~Gr~l~v~~ak~ 699 (731)
+.+.||+|.|.|...
T Consensus 198 r~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 198 RWFAGRKVVAEVYDQ 212 (222)
T ss_dssp CBSSSSBCEEEECCH
T ss_pred ceECCeEEEEEEcCH
Confidence 999999999999853
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.57 E-value=1.1e-07 Score=94.08 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=61.1
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCC-----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeec
Q 037049 11 YVTEDRLRDFFSQKGEITDAKLMRTKD-----GKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEIAR 77 (731)
Q Consensus 11 ~~te~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~a~ 77 (731)
.-.+++|++.|++||.|.+|.|+++.. ++++|++||+|.+.++|.+|+..|||..+.||.|+|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 345788999999999999999997654 4899999999999999999999999999999999999875
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.5e-07 Score=76.63 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccc-----CceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 492 RSNHVFLVKNLPYDSSEGELAKMFGKF-----GSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 492 ~~~~~l~V~NLp~~~te~~L~~~F~~~-----G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
...++|-+.|||..+++..|+.+..+| |.|.++.+.+..+-|+|+|.+...|.+|.-.|+|..|.||+|+|.-..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 347899999999999999999999999 999999999999999999999999999999999999999999998764
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=7.9e-08 Score=78.39 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=61.9
Q ss_pred cCCCCeEEEeCCCCC-----CCH----HHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCccc
Q 037049 295 VLESGRLFVRNLPYT-----ATE----DELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIF 365 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~-----~t~----~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~ 365 (731)
.++..||+|.-++.. +.. .+|.+.|..||.|..++++.|+ +||+|.+.++|.+||. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 445569999888743 333 4688999999999999998765 9999999999999996 999999
Q ss_pred CCeEEEEEecC
Q 037049 366 QGRLLHVMPAR 376 (731)
Q Consensus 366 ~g~~l~V~~a~ 376 (731)
.||.|+|.+-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999754
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.9e-06 Score=70.39 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=65.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccc-----cCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccC
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGEH-----IKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILD 688 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~~-----G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~ 688 (731)
..++|-+-|||..+++..|+.++.++ |. |..+.+..+. + -|+|+|.+...|-+|...|+|..|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~---i~KI~L~pDH--~------GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKD---IRKILLVSDF--N------GAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTT---CSEEEEETTT--T------EEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccc---eeEEEEecCC--C------ceEEEEccchhhHHHHhhcCCeeec
Confidence 36789999999999999999999999 98 8888887764 2 2999999999999999999999999
Q ss_pred CcEEEEEec
Q 037049 689 GHALILQLC 697 (731)
Q Consensus 689 Gr~l~v~~a 697 (731)
||+|+|.=.
T Consensus 89 gr~Lr~gTv 97 (117)
T 2l9w_A 89 GKVIRSGTI 97 (117)
T ss_dssp TEEEEEECH
T ss_pred CeEEEecCH
Confidence 999999743
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=0.00011 Score=61.11 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCC-C---H-HHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeCC
Q 037049 494 NHVFLVKNLPYDS-S---E-GELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWAP 566 (731)
Q Consensus 494 ~~~l~V~NLp~~~-t---e-~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a~ 566 (731)
.++|+|-||+..+ . . +.++.+|..|+++......++-.-..|.|.++++|.+|...|++..|.|+.|+|-+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999998765 2 2 5789999999999999888988889999999999999999999999999999999997
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00026 Score=58.44 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhcc---ccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 614 ESRSLFVKNLNFKTCDENLRKHFGE---HIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 614 ~~~~L~V~NLp~~~tee~L~~~F~~---~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
-+.+|.|.|||..+.++.|.-+|+. -|. |.|..+.... +-|+|.|.+.+.|.+.|+. ..+.|+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGG-G~V~~v~~~~----------~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGG-GPVLSWQRLG----------CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCC-CCEEEEEEET----------TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCC-ceeeEEEEcC----------CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 4568999999999999999999976 455 6688876654 2399999999999999883 47788999
Q ss_pred EEEEEeccCCchhhHHhhhccCCCCceEEEeeccceee
Q 037049 691 ALILQLCHAKKDEQVVKKAEKDKSSTKLLVRNVAFEAQ 728 (731)
Q Consensus 691 ~l~v~~ak~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 728 (731)
+|.|...-++ ...+|++++|+=.|+
T Consensus 75 ~LsV~P~~~~-------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAPPR-------------APARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECCCC-------------CCCCCCCCSCCCCCC
T ss_pred EEEEEcCCCC-------------CcceEeeecCCCCCC
Confidence 9999886665 567899999886554
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00011 Score=60.90 Aligned_cols=75 Identities=16% Similarity=0.076 Sum_probs=63.0
Q ss_pred CeEEEeCCCCCC-C----HHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 037049 616 RSLFVKNLNFKT-C----DENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH 690 (731)
Q Consensus 616 ~~L~V~NLp~~~-t----ee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr 690 (731)
++|+|.||+..+ + .+.++.+|..|++ +......+.. .-..|.|.+.++|.+|...||++.+.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~---~~tF~~lkSF--------RRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDK---DTTFQYFKSF--------KRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCS---SCEEEEETTT--------TEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCc---CcceeecCcc--------eEEEEEeCChHHHHHHHHHhccceecCc
Confidence 579999998766 2 3688999999999 6666666543 2388999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 037049 691 ALILQLCHAKK 701 (731)
Q Consensus 691 ~l~v~~ak~~~ 701 (731)
.|+|-||.+..
T Consensus 75 ~~r~YFgq~~~ 85 (104)
T 1wey_A 75 EMKLYFAQTLH 85 (104)
T ss_dssp ECEEECCCCSS
T ss_pred eeEEEecCCCC
Confidence 99999998654
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.001 Score=54.97 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=61.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhccc-----CceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCCceEEEEeC
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKF-----GSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKGVPLYLEWA 565 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~-----G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~gr~l~v~~a 565 (731)
....++|.|.|||..++++.|.-.|+.- |.|..+...+ +-|+|.|.+...|++.++. .-..|.+..|.|.+.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 3456799999999999999999999872 5788887776 7899999999999998865 356788899999886
Q ss_pred CC
Q 037049 566 PS 567 (731)
Q Consensus 566 ~~ 567 (731)
..
T Consensus 82 ~~ 83 (104)
T 2dhx_A 82 PP 83 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.00 E-value=0.0028 Score=51.79 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=56.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC--C-CcceEEEEEecCHHHHHHHHHHhCCCccC
Q 037049 1 SRICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--G-KSRQFAFIGFRTEQEAEEAIKYFNKSYLD 67 (731)
Q Consensus 1 s~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g-~~~g~afV~f~~~~~a~~ai~~~~g~~~~ 67 (731)
|+|-|++||+.+||+++.+.++.+..+.....+..+. + ....-|||.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 6899999999999999999999998877666665543 2 23467999999999999999999998765
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0026 Score=54.42 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=62.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCCEEEEEeCCHHHHHHHHHhcCCCccCC-ceEEEEeCC
Q 037049 491 KRSNHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKTLALVVFLEPVEAAAAFKGLAYKRYKG-VPLYLEWAP 566 (731)
Q Consensus 491 ~~~~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg~afV~F~~~e~A~~Ai~~lng~~~~g-r~l~v~~a~ 566 (731)
....+.|.|.++|.. ....|...|++||.|.+.......++-.|.|.+..+|.+|+.. ||..|.| -.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 345678999999986 4778999999999999988766788999999999999999976 9999985 556777753
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.87 E-value=0.0044 Score=50.58 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=55.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCcc
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTIL 687 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i 687 (731)
+.|.||+||..+|++++.+.+..... +.......-..+.+...-.-|||.|.+.+++..-...++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~---~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPE---HDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCC---EEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCccc---ceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 46899999999999999999999877 6655544433222223456799999999999999999999888
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.74 E-value=0.0037 Score=50.87 Aligned_cols=53 Identities=28% Similarity=0.443 Sum_probs=45.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc
Q 037049 299 GRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360 (731)
Q Consensus 299 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l 360 (731)
..++| ++|..+...||.++|+.||.| .|+.+-|. -|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 35666 999999999999999999955 67777665 6999999999999999766
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.43 E-value=0.0065 Score=49.46 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=45.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~ 62 (731)
||+-++|..+...||.++|+.||.|. |+.+-| .-|||.|.+++.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~-I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEE-EEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999654 777777 469999999999999999653
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.12 E-value=0.0086 Score=51.87 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=58.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhcccCceeE-EEcc----------------C---CCCEEEEEeCCHHHHHHHHHhcCCC
Q 037049 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLDK-VILP----------------S---TKTLALVVFLEPVEAAAAFKGLAYK 553 (731)
Q Consensus 494 ~~~l~V~NLp~~~te~~L~~~F~~~G~i~~-v~l~----------------~---~kg~afV~F~~~e~A~~Ai~~lng~ 553 (731)
...|.|.+.|.. ....+...|++||.|.. +... + ..++..|+|.++.+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 457889999875 46678899999999986 2221 1 256889999999999999975 999
Q ss_pred ccCCceEEEEeCCCC
Q 037049 554 RYKGVPLYLEWAPSD 568 (731)
Q Consensus 554 ~~~gr~l~v~~a~~~ 568 (731)
.|.|..|-|.+....
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999999999988643
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.09 E-value=0.026 Score=48.20 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=59.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcCCcccCC-eEEEEEe
Q 037049 296 LESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLDNSIFQG-RLLHVMP 374 (731)
Q Consensus 296 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~~~g-~~l~V~~ 374 (731)
...+-|.|-|.|... ...|..+|+.||.|.+.... . ...+-.|.|.++.+|++|| ..||..+.| -.|-|.+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 345688899999985 67788999999999988752 1 2458999999999999999 889999985 6777777
Q ss_pred cC
Q 037049 375 AR 376 (731)
Q Consensus 375 a~ 376 (731)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.84 E-value=0.012 Score=48.12 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=45.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~ 361 (731)
.++| ++|..+...||..+|+.||. ..|..+-|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 99999999999999999994 467777664 69999999999999998764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.42 E-value=0.021 Score=46.66 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=45.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFN 62 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~ 62 (731)
||+-++|..+...||.++|+.||.| .|+.+-| .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999944 4777777 469999999999999999765
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.33 E-value=0.028 Score=46.05 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=54.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCc-----
Q 037049 616 RSLFVKNLNFKTCDENLRKHFGEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGH----- 690 (731)
Q Consensus 616 ~~L~V~NLp~~~tee~L~~~F~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr----- 690 (731)
-.|.||+||..+|++++.+.+..+-+ +.......-..+.+...-.-|||.|.+.++...-...++|..+-+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~---~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA---HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS---EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc---cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 45999999999999999999987755 4332211111111111234699999999999999999999887222
Q ss_pred EEEEEecc
Q 037049 691 ALILQLCH 698 (731)
Q Consensus 691 ~l~v~~ak 698 (731)
+-.|+||.
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 34456654
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.32 E-value=0.023 Score=49.24 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=55.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeeeC--------C----CC-CceeEEEEEecCHHHHHHHHHHcCCccc
Q 037049 300 RLFVRNLPYTATEDELREHFSKFGNVSE-VHIVVDK--------D----TK-RSKGIAYVLYAIPESASRAIEVLDNSIF 365 (731)
Q Consensus 300 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~-i~i~~d~--------~----~g-~~~g~afV~F~~~e~A~~Al~~l~~~~~ 365 (731)
-|.|-|.|.... ..+...|++||.|.+ +.+.+.. . .+ ....+-.|+|.++.+|.+|| ..||..|
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVF 86 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEE
T ss_pred EEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEe
Confidence 577889988655 556699999999876 2111100 0 00 12457899999999999999 8999999
Q ss_pred CCeEEEEEecC
Q 037049 366 QGRLLHVMPAR 376 (731)
Q Consensus 366 ~g~~l~V~~a~ 376 (731)
.|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888875
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.81 E-value=0.025 Score=46.36 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC--CC-cceEEEEEecCHHHHHHHHHHhCCCccC
Q 037049 2 RICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKD--GK-SRQFAFIGFRTEQEAEEAIKYFNKSYLD 67 (731)
Q Consensus 2 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g~-~~g~afV~f~~~~~a~~ai~~~~g~~~~ 67 (731)
+|-|++||+.+||+++.+.++.+-.+.....+..+. +. .-.-|||.|.+.++...-.+.++|..|-
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 688999999999999888777664433222222111 11 1256899999999999999999998764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.42 E-value=0.021 Score=61.32 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=43.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhcccCceeEEEccCCCC-EEEEEeCCHHHHHHHHHh
Q 037049 494 NHVFLVKNLPYDSSEGELAKMFGKFGSLDKVILPSTKT-LALVVFLEPVEAAAAFKG 549 (731)
Q Consensus 494 ~~~l~V~NLp~~~te~~L~~~F~~~G~i~~v~l~~~kg-~afV~F~~~e~A~~Ai~~ 549 (731)
.++|+|. .|..+++.+|.+.|++||+|.++.+.+++| ||+|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689998 688999999999999999999999998887 999999999999876643
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.32 E-value=0.11 Score=55.86 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHH
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAI 357 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al 357 (731)
.++|+|. .|...++.+|.++|++||+|.++....+. .-||.|+|.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHH
Confidence 4689996 79999999999999999999998776543 369999999999998776
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.80 E-value=7.4 Score=42.47 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=44.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 037049 3 ICVKNLPKYVTEDRLRDFFSQKGEITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNK 63 (731)
Q Consensus 3 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g 63 (731)
++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 443 l~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 443 LHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 4455 89999999999999999954 5666665 5799999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.66 E-value=7.5 Score=42.43 Aligned_cols=55 Identities=27% Similarity=0.429 Sum_probs=45.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 037049 298 SGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVLD 361 (731)
Q Consensus 298 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l~ 361 (731)
...++|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3467776 99999999999999999954 56555443 69999999999999998885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.51 E-value=46 Score=25.29 Aligned_cols=68 Identities=7% Similarity=0.124 Sum_probs=43.1
Q ss_pred eEEEeCC-CCCCCHHHHHHHhhcCCC-----eEEEEEeecCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 037049 2 RICVKNL-PKYVTEDRLRDFFSQKGE-----ITDAKLMRTKDGKSRQFAFIGFRTEQEAEEAIKYFNKSYLDTCRISCEI 75 (731)
Q Consensus 2 ~l~V~nL-p~~~te~~l~~~F~~~G~-----i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ai~~~~g~~~~g~~i~v~~ 75 (731)
++||..= -..+...+|..++..-+. |-.|.|.- .|.||+-.. ..|..++..|++..+.|+.++|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 4555322 234677788777765543 55677655 389999854 568889999999999999999986
Q ss_pred ec
Q 037049 76 AR 77 (731)
Q Consensus 76 a~ 77 (731)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=41.34 E-value=32 Score=26.28 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHhccccCc--ccEEEEEEeeecCCCCcccccEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 037049 625 FKTCDENLRKHFGEHIKE--GRILSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCH 698 (731)
Q Consensus 625 ~~~tee~L~~~F~~~G~~--~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~~Ai~~lng~~i~Gr~l~v~~ak 698 (731)
..++..+|..++..-+.+ ..|-.+.|..+ |.||+-. ...|..++..|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----------~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN----------ASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS----------CEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC----------cEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 355667777777654432 23555666544 4899987 456888999999999999999998875
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.20 E-value=57 Score=29.51 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=37.8
Q ss_pred CeEEEeCCCC-C--------CCHHHHHHHh--ccccCcccEEEEEEeeecCCCCcccccEEEEEeCCHHHHH
Q 037049 616 RSLFVKNLNF-K--------TCDENLRKHF--GEHIKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSVETAT 676 (731)
Q Consensus 616 ~~L~V~NLp~-~--------~tee~L~~~F--~~~G~~~~I~~vki~~~~~~~~~~~kG~afV~F~s~e~A~ 676 (731)
.+..|-|+|. . ..-.+|++.| ..|.+ ..|+....+ .| ++|+|.|.|.+--.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p----~kv~~l~~~-~G---h~g~aIv~F~~dw~Gf 76 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNP----TRVRPLWNY-LG---HSGTAIVEFNKDWNGL 76 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCC----SEEEEEECS-SB---EEEEEEEECCSSHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCC----ceeEecccC-CC---CceeEEEEecCChHHH
Confidence 4577889987 2 2457999977 99987 446666654 12 8999999998754433
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.12 E-value=95 Score=28.06 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=38.4
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHH--hcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHH-HHHH
Q 037049 300 RLFVRNLPY-T--------ATEDELREHF--SKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESA-SRAI 357 (731)
Q Consensus 300 ~l~v~nLp~-~--------~t~~~l~~~F--~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A-~~Al 357 (731)
.+.|-|+|. . ....+|++.| ..|.++ .|+.+..+ .| ++|+|.|.|..--.- ..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~-~G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY-LG-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS-SB-EEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC-CC-CceeEEEEecCChHHHHHHH
Confidence 566779887 2 3457899977 999876 46666665 34 899999999765443 3444
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.31 E-value=3.1e+02 Score=21.40 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=46.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeeCCCCCceeEEEEEecCHHHHHHHHHHc
Q 037049 295 VLESGRLFVRNLPYTATEDELREHFSKFGNVSEVHIVVDKDTKRSKGIAYVLYAIPESASRAIEVL 360 (731)
Q Consensus 295 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~i~i~~d~~~g~~~g~afV~F~~~e~A~~Al~~l 360 (731)
....|-|.|-|+|..+-..++.-.....|---.|..+ -|.|.+.|.+.+...-|++.|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 5567889999999999888888777888754455443 347999999999999999877
Done!