BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037050
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
Length = 345
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 28 TTRFFG--------NVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMS 79
T R FG A A + E+G QV +GG E+D ++ V NR
Sbjct: 89 TDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAK 148
Query: 80 KIIWVIFEILEKK 92
KI F +++ K
Sbjct: 149 KIFEEGFRVIKIK 161
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 28 TTRFFG--------NVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMS 79
T R FG A A + E+G QV +GG E+D ++ V NR
Sbjct: 89 TDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAK 148
Query: 80 KIIWVIFEILEKK 92
KI F +++ K
Sbjct: 149 KIFEEGFRVIKIK 161
>pdb|3TIX|B Chain B, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|D Chain D, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 458
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 21 CVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMSK 80
C+ + ++ T F + A I +G L +LF D++ ++ L + + S S
Sbjct: 87 CIRSDVDMTHFKNILNRGNGAGIVLGSNYTL------LLFTEDNNALMNLYDCQGQSNSP 140
Query: 81 IIWVIFEILE------KKKNFQNFKAQHTPRS 106
VIFE LE KN + K H +S
Sbjct: 141 FWMVIFEPLESILVEWSAKNLRPKKPYHKSQS 172
>pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I
S-Adenosylmethionine-Dependent Methyltransferase
(Lmo1582) From Listeria Monocytogenes At 2.20 A
Resolution
Length = 344
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 64 SHEVVELVNNRTNSMSKIIWVIFEILEKKKNFQNFKAQHTPRSCNGIAHFLAKLVLQKKE 123
S+E +EL N + K + + +L+ K+ Q TP S I +L + V+QKK+
Sbjct: 73 SYESIELENFSNEEIRKGLQLA--LLKGXKHGIQVNHQXTPDSIGFIVAYLLEKVIQKKK 130
Query: 124 IVIWLD 129
V LD
Sbjct: 131 NVSILD 136
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 25.8 bits (55), Expect = 9.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 36 AMTQAATIEIGMQVALSVGGYSVLFE 61
A+TQ A IG A++VGG S FE
Sbjct: 335 AVTQVAAQVIGNDAAITVGGLSGAFE 360
>pdb|3EFE|A Chain A, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN
FROM BACILLUS Anthracis
pdb|3EFE|B Chain B, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN
FROM BACILLUS Anthracis
pdb|3EFE|C Chain C, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN
FROM BACILLUS Anthracis
pdb|3EFE|D Chain D, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN
FROM BACILLUS Anthracis
pdb|3EFE|E Chain E, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN
FROM BACILLUS Anthracis
pdb|3EFE|F Chain F, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN
FROM BACILLUS Anthracis
Length = 212
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 MDAKKQVAGLAVVIRDWERNCVAAAINTTRFF-GNVAMTQAATIEIGMQVALSVGGYSV 58
M KK + + DWE + A +N+ R+F ++A + T+ ++ ++GG +
Sbjct: 3 MQTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRI 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,703,482
Number of Sequences: 62578
Number of extensions: 119634
Number of successful extensions: 229
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)