BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037050
         (144 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q63269|ITPR3_RAT Inositol 1,4,5-trisphosphate receptor type 3 OS=Rattus norvegicus
           GN=Itpr3 PE=1 SV=1
          Length = 2670

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 26/144 (18%)

Query: 11  AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESD-----SH 65
           A+ I+D++ N  A+  +    F       A+T+E       +V G +V F +D     + 
Sbjct: 809 AITIKDYDSNLNASRDDKKNKF-------ASTMEFVEDYLNNVVGEAVPFANDEKNILTF 861

Query: 66  EVVELVNN--------------RTNSMSKIIWVIFEILEKKKNFQNFKAQHTPRSCNGIA 111
           EVV L +N               T ++  II  I       + ++    ++  RS  G+ 
Sbjct: 862 EVVSLAHNLIYFGFYSFSELLRLTRTLLGIIDCIQAPAAVLQAYEEPGGKNVRRSIQGVG 921

Query: 112 HFLAKLVLQKKEIVIWLDEIPTDI 135
           H ++ +VL +K+ V     +PT +
Sbjct: 922 HMMSTMVLSRKQSVFGASSLPTGV 945


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,397,578
Number of Sequences: 539616
Number of extensions: 1603702
Number of successful extensions: 3718
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3716
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)