Query 037050
Match_columns 144
No_of_seqs 145 out of 1099
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:34:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.9 2.5E-26 8.6E-31 154.5 11.9 119 2-121 13-133 (141)
2 3u3g_D Ribonuclease H, RNAse H 99.9 3.5E-26 1.2E-30 153.4 10.4 118 2-120 13-136 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.9 6.3E-25 2.2E-29 149.3 12.3 116 3-120 13-133 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.9 9E-21 3.1E-25 129.5 12.9 111 7-121 25-151 (154)
5 3h08_A RNH (ribonuclease H); R 99.8 2.1E-20 7.2E-25 126.6 7.2 114 2-121 14-144 (146)
6 1jl1_A Ribonuclease HI; RNAse 99.8 8.2E-20 2.8E-24 124.9 7.8 115 2-122 14-144 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.8 1.5E-19 5.1E-24 124.0 8.0 114 2-121 16-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 1.7E-19 5.7E-24 124.7 7.4 116 2-123 18-150 (166)
9 3qio_A GAG-POL polyprotein; RN 99.8 1E-18 3.6E-23 118.9 10.9 110 2-121 22-147 (150)
10 3p1g_A Xenotropic murine leuke 99.7 2.7E-17 9.1E-22 113.5 10.9 113 3-121 34-156 (165)
11 2lsn_A Reverse transcriptase; 99.7 3.1E-17 1.1E-21 113.1 11.0 111 8-120 28-162 (165)
12 2kq2_A Ribonuclease H-related 99.7 6E-18 2E-22 114.7 5.1 112 6-122 18-138 (147)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 1E-14 3.6E-19 117.2 9.6 106 2-119 446-555 (555)
14 2zd1_A Reverse transcriptase/r 99.5 1.3E-14 4.5E-19 116.7 7.2 104 3-118 450-557 (557)
15 1zbf_A Ribonuclease H-related 99.5 1.7E-13 5.8E-18 92.1 8.5 70 2-75 21-90 (142)
16 4htu_A Ribonuclease H, RNAse H 99.4 5.3E-13 1.8E-17 88.5 8.5 69 2-74 15-83 (134)
17 1uwz_A Cytidine deaminase; CDD 89.7 0.31 1.1E-05 31.8 3.3 58 6-64 22-79 (136)
18 2fr5_A Cytidine deaminase; tet 86.9 0.46 1.6E-05 31.4 2.8 57 7-64 35-91 (146)
19 2z3g_A Blasticidin-S deaminase 81.6 1.4 4.9E-05 28.3 3.4 56 6-64 25-80 (130)
20 1r5t_A Cytidine deaminase; zin 78.9 2 6.8E-05 28.1 3.4 58 7-64 31-88 (142)
21 2b3j_A TRNA adenosine deaminas 77.4 1.5 5.2E-05 29.2 2.6 55 7-62 26-81 (159)
22 1rw3_A POL polyprotein; RNA an 77.3 0.63 2.1E-05 36.2 0.7 65 9-74 357-428 (455)
23 2a8n_A Cytidine and deoxycytid 76.9 1.6 5.4E-05 28.5 2.5 55 7-62 23-78 (144)
24 3dh1_A TRNA-specific adenosine 75.2 2.3 7.8E-05 29.3 3.0 46 8-54 46-92 (189)
25 1wwr_A TRNA adenosine deaminas 75.2 2.1 7E-05 29.0 2.7 56 6-62 41-97 (171)
26 2d30_A Cytidine deaminase; pur 73.9 2.4 8.1E-05 27.8 2.7 56 8-64 33-88 (141)
27 2nx8_A TRNA-specific adenosine 73.9 2.3 8E-05 28.9 2.8 55 7-62 35-90 (179)
28 2w4l_A DCMP deaminse, deoxycyt 72.5 2.6 8.7E-05 28.7 2.7 40 7-46 31-90 (178)
29 2g84_A Cytidine and deoxycytid 71.4 5.4 0.00018 27.5 4.2 41 9-49 49-91 (197)
30 1z3a_A TRNA-specific adenosine 69.9 2.9 0.0001 28.1 2.5 55 7-62 28-83 (168)
31 3r2n_A Cytidine deaminase; str 67.1 3.5 0.00012 26.9 2.4 55 8-63 31-85 (138)
32 1wkq_A Guanine deaminase; doma 65.5 3.9 0.00013 27.4 2.4 53 9-62 33-86 (164)
33 3b8f_A Putative blasticidin S 63.6 7 0.00024 25.4 3.3 54 9-63 24-77 (142)
34 3mpz_A Cytidine deaminase; ssg 62.0 4.8 0.00016 26.7 2.3 55 8-63 46-100 (150)
35 2zd1_B P51 RT; P51/P66, hetero 60.5 17 0.00057 28.0 5.5 66 8-73 335-405 (428)
36 1p6o_A Cytosine deaminase; hyd 60.3 4.7 0.00016 26.8 2.1 42 7-48 33-76 (161)
37 4h8e_A Undecaprenyl pyrophosph 54.0 13 0.00045 26.8 3.6 55 7-65 25-79 (256)
38 3msh_A Hepatitis B virus X-int 51.9 38 0.0013 20.6 5.9 53 6-65 15-72 (99)
39 3dmo_A Cytidine deaminase; str 51.8 16 0.00055 23.7 3.5 56 8-64 32-89 (138)
40 3tue_A Tryparedoxin peroxidase 49.4 37 0.0013 23.7 5.3 47 6-54 144-190 (219)
41 2hvw_A Deoxycytidylate deamina 49.3 19 0.00064 24.5 3.7 53 7-62 60-128 (184)
42 3sbc_A Peroxiredoxin TSA1; alp 46.8 45 0.0016 23.2 5.4 48 6-55 140-187 (216)
43 3ugs_B Undecaprenyl pyrophosph 45.3 35 0.0012 24.1 4.6 89 9-107 9-103 (225)
44 3oj6_A Blasticidin-S deaminase 44.3 27 0.00092 23.2 3.7 39 8-48 51-89 (158)
45 1ctt_A Cytidine deaminase; hyd 41.0 20 0.00067 26.4 2.9 58 7-64 208-266 (294)
46 1t23_A Chromosomal protein MC1 39.6 8.3 0.00028 23.1 0.6 30 11-45 5-34 (93)
47 3ewt_E Tumor necrosis factor r 39.5 28 0.00097 15.6 3.0 21 35-55 5-25 (25)
48 3r8n_K 30S ribosomal protein S 37.8 74 0.0025 19.9 5.2 48 14-62 22-74 (117)
49 3gg7_A Uncharacterized metallo 35.0 17 0.00057 26.0 1.7 43 47-91 180-222 (254)
50 2wp7_A PPPDE peptidase domain- 31.4 12 0.0004 25.2 0.3 52 78-133 81-133 (168)
51 2xzm_K RPS14E; ribosome, trans 31.3 1.1E+02 0.0038 20.0 5.2 48 14-62 44-97 (151)
52 3qb8_A A654L protein; GNAT N-a 31.0 73 0.0025 20.1 4.3 35 41-75 127-161 (197)
53 4g84_A Histidine--tRNA ligase, 28.9 1.9E+02 0.0064 22.0 6.9 65 7-72 107-179 (464)
54 1xcc_A 1-Cys peroxiredoxin; un 28.4 1.3E+02 0.0045 20.4 5.4 43 11-55 130-172 (220)
55 3ph0_C ASCG; type III secretio 28.1 7.1 0.00024 21.4 -1.0 34 81-120 5-38 (61)
56 2b3z_A Riboflavin biosynthesis 28.0 45 0.0015 25.1 3.1 38 7-48 35-72 (373)
57 1vq2_A DCMP deaminase, deoxycy 27.5 47 0.0016 22.4 2.9 22 8-30 22-43 (193)
58 2hxv_A Diaminohydroxyphosphori 27.1 36 0.0012 25.5 2.4 36 8-47 36-71 (360)
59 3tjj_A Peroxiredoxin-4; thiore 26.6 1.4E+02 0.0048 20.8 5.4 42 11-54 184-225 (254)
60 2g3a_A Acetyltransferase; stru 25.9 93 0.0032 18.7 4.0 33 41-73 95-127 (152)
61 3j20_M 30S ribosomal protein S 25.8 1.4E+02 0.0047 19.3 5.6 47 15-62 31-83 (137)
62 3a2v_A Probable peroxiredoxin; 25.6 1.4E+02 0.0049 20.9 5.3 42 11-54 126-167 (249)
63 2v2g_A Peroxiredoxin 6; oxidor 24.6 1.4E+02 0.0049 20.6 5.1 42 11-54 129-170 (233)
64 3qpm_A Peroxiredoxin; oxidored 24.4 1.6E+02 0.0053 20.3 5.3 43 11-55 170-212 (240)
65 3sgv_B Undecaprenyl pyrophosph 23.5 40 0.0014 24.2 1.9 53 8-64 19-71 (253)
66 2g6v_A Riboflavin biosynthesis 23.1 46 0.0016 25.3 2.4 36 8-47 52-87 (402)
67 2d4p_A Hypothetical protein TT 22.6 76 0.0026 20.5 3.0 22 44-65 81-102 (141)
68 1prx_A HORF6; peroxiredoxin, h 21.0 2E+02 0.0069 19.5 6.1 42 11-54 133-174 (224)
69 3obf_A Putative transcriptiona 20.4 1.8E+02 0.0061 18.7 5.0 27 4-30 118-144 (176)
70 1ctt_A Cytidine deaminase; hyd 20.4 72 0.0025 23.4 2.8 42 7-48 70-113 (294)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.5e-26 Score=154.54 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=105.0
Q ss_pred CCCCCceeEEEEEeCCC-CCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCC-CCch
Q 037050 2 DAKKQVAGLAVVIRDWE-RNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRT-NSMS 79 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~-g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~-~~~~ 79 (144)
+.+++.+|+|+|+++.. |.++...+..++ ..|++.||+.|++.||+.+.++|.++|.|+|||+.+++.+++.. ....
T Consensus 13 ~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~ 91 (141)
T 3hst_B 13 RGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHP 91 (141)
T ss_dssp SSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSH
T ss_pred CCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCH
Confidence 45678999999999987 666666666554 68999999999999999999999999999999999999999864 4445
Q ss_pred hHHHHHHHHHHHHhcCccEEEEEecCCchHHHHHHHhhhccc
Q 037050 80 KIIWVIFEILEKKKNFQNFKAQHTPRSCNGIAHFLAKLVLQK 121 (144)
Q Consensus 80 ~~~~~~~~i~~l~~~~~~~~~~~v~r~~N~~Ad~LAk~a~~~ 121 (144)
.+..++++|+.+...|..++|.||+|++|..||.|||.|+..
T Consensus 92 ~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 92 DLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHH
Confidence 688889999999999999999999999999999999999863
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.94 E-value=3.5e-26 Score=153.40 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=105.3
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCC----ceEEeccHHHHHHHHhcCCC-
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGY----SVLFESDSHEVVELVNNRTN- 76 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~----~v~~esDs~~vv~~l~~~~~- 76 (144)
..+++.+|+|+|+++++|..+...+..++ ..|++.||++|++.||+.+.+.+.+ +|+|+|||+.+++.+++...
T Consensus 13 ~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~ 91 (140)
T 3u3g_D 13 RGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKV 91 (140)
T ss_dssp SSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCC
T ss_pred CCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCccc
Confidence 45678899999999999988777776665 5799999999999999999999999 99999999999999998653
Q ss_pred CchhHHHHHHHHHHH-HhcCccEEEEEecCCchHHHHHHHhhhcc
Q 037050 77 SMSKIIWVIFEILEK-KKNFQNFKAQHTPRSCNGIAHFLAKLVLQ 120 (144)
Q Consensus 77 ~~~~~~~~~~~i~~l-~~~~~~~~~~~v~r~~N~~Ad~LAk~a~~ 120 (144)
....+..+++++..+ ..+|..++|.||||++|..||.|||.|+.
T Consensus 92 ~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 92 KEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAID 136 (140)
T ss_dssp CCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHH
Confidence 344677889999999 99999999999999999999999999876
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.93 E-value=6.3e-25 Score=149.31 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=100.4
Q ss_pred CCCCceeE-EEEEeCCCCCeeeecccccC---CCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCCC-C
Q 037050 3 AKKQVAGL-AVVIRDWERNCVAAAINTTR---FFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTN-S 77 (144)
Q Consensus 3 ~~~~~~g~-G~vird~~g~~~~~~~~~~~---~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~-~ 77 (144)
.+++.+|+ |+|+++ +|..+...+...+ ...|+++||+.|++.||+.+.++|.++|.++|||+.+++.+++... .
T Consensus 13 ~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~ 91 (149)
T 2ehg_A 13 KNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVK 91 (149)
T ss_dssp SSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCC
T ss_pred CCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccC
Confidence 46789996 999999 8887755443333 3789999999999999999999999999999999999999998632 2
Q ss_pred chhHHHHHHHHHHHHhcCccEEEEEecCCchHHHHHHHhhhcc
Q 037050 78 MSKIIWVIFEILEKKKNFQNFKAQHTPRSCNGIAHFLAKLVLQ 120 (144)
Q Consensus 78 ~~~~~~~~~~i~~l~~~~~~~~~~~v~r~~N~~Ad~LAk~a~~ 120 (144)
...+..+++++..++..| .++|.||||++|..||.|||.|..
T Consensus 92 ~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~ 133 (149)
T 2ehg_A 92 AKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYE 133 (149)
T ss_dssp CTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHH
Confidence 346888999999998888 599999999999999999999987
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.86 E-value=9e-21 Score=129.52 Aligned_cols=111 Identities=12% Similarity=-0.046 Sum_probs=91.0
Q ss_pred ceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcC------------
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNR------------ 74 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~------------ 74 (144)
.+|+|+|+++.++..+ +..+.+..|++.||++|++.||+.+.+.+.++|.|+|||+.+++.+++.
T Consensus 25 ~aG~Gvv~~~~~~~~~---~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~ 101 (154)
T 2qkb_A 25 RAGIGVYWGPGHPLNV---GIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTS 101 (154)
T ss_dssp EEEEEEECSTTCTTCE---EEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCT
T ss_pred cEEEEEEEECCCceeE---EeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhcccccc
Confidence 4899999998655332 2334446899999999999999999999999999999999999999861
Q ss_pred CCCchhHHHHHHHHHHHHhcCccEEEEEecCC----chHHHHHHHhhhccc
Q 037050 75 TNSMSKIIWVIFEILEKKKNFQNFKAQHTPRS----CNGIAHFLAKLVLQK 121 (144)
Q Consensus 75 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~v~r~----~N~~Ad~LAk~a~~~ 121 (144)
...+.....++++|..++..+. +.|.||+++ +|..||.|||.+...
T Consensus 102 ~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 102 AGKEVINKEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp TSSBCTTHHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred CCCccccHHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 1122345678999999888765 999999985 599999999999874
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.82 E-value=2.1e-20 Score=126.58 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=90.8
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcC-------
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNR------- 74 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~------- 74 (144)
..+++.+|+|+|+++.+.. ...+...+ ..|++.||+.|++.||+.+.+ ..+|.|+|||+.+++.+++.
T Consensus 14 ~~n~g~~g~G~v~~~~~~~--~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~ 88 (146)
T 3h08_A 14 SGNPGKGGWGALLMYGSSR--KEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVK 88 (146)
T ss_dssp SSTTEEEEEEEEEEETTEE--EEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHH
T ss_pred CCCCCceEEEEEEEECCee--EEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHH
Confidence 4567889999999986432 33333343 579999999999999999876 58999999999999999872
Q ss_pred ------CCCchhHHHHHHHHHHHHhcCccEEEEEec----CCchHHHHHHHhhhccc
Q 037050 75 ------TNSMSKIIWVIFEILEKKKNFQNFKAQHTP----RSCNGIAHFLAKLVLQK 121 (144)
Q Consensus 75 ------~~~~~~~~~~~~~i~~l~~~~~~~~~~~v~----r~~N~~Ad~LAk~a~~~ 121 (144)
...+.....+++++..+...+ .+.|.||+ |++|..||.|||.|...
T Consensus 89 ~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 89 NGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp TTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 122334567888898887776 59999999 99999999999999864
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.80 E-value=8.2e-20 Score=124.93 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=90.1
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhc--------
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNN-------- 73 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~-------- 73 (144)
..+++.+|+|+|+++..+.....+ ..+ ..|++.||+.|++.||+.+.+. .+|.|+|||+.+++.+++
T Consensus 14 ~~n~~~~G~G~v~~~~~~~~~~~~--~~~-~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n 88 (155)
T 1jl1_A 14 LGNPGPGGYGAILRYRGREKTFSA--GYT-RTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQWIHNWKKR 88 (155)
T ss_dssp SSTTEEEEEEEEEEETTEEEEEEE--EEE-EECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHTTHHHHHHT
T ss_pred CCCCCceEEEEEEEECCeEEEEec--CCC-CCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 356788999999998665433332 233 5789999999999999998764 899999999999999987
Q ss_pred CC----CCchhHHHHHHHHHHHHhcCccEEEEEec----CCchHHHHHHHhhhcccC
Q 037050 74 RT----NSMSKIIWVIFEILEKKKNFQNFKAQHTP----RSCNGIAHFLAKLVLQKK 122 (144)
Q Consensus 74 ~~----~~~~~~~~~~~~i~~l~~~~~~~~~~~v~----r~~N~~Ad~LAk~a~~~~ 122 (144)
.. ..+.....+++++..++.. ..+.|.||+ |++|..||.|||.+....
T Consensus 89 ~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 144 (155)
T 1jl1_A 89 GWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKGHAGHPENERADELARAAAMNP 144 (155)
T ss_dssp TTBCTTSCBCTTHHHHHHHHHHTTT-CEEEEEECCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred ccccccCCccCCHHHHHHHHHHHcc-CceEEEEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 11 1122335678888887765 489999999 889999999999998753
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.80 E-value=1.5e-19 Score=124.01 Aligned_cols=114 Identities=8% Similarity=-0.001 Sum_probs=89.3
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhc--------
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNN-------- 73 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~-------- 73 (144)
..+++.+|+|+|+++..... ..+...+ ..|++.||+.|++.||+.+.+. .+|.|+|||+.+++.+++
T Consensus 16 ~~n~g~~G~G~v~~~~~~~~--~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n 90 (158)
T 2e4l_A 16 LGNPGPGGYGIVMNYKGHTK--EMSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIMTWIHGWKKK 90 (158)
T ss_dssp SSSSEEEEEEEEEEETTEEE--EEEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHHTHHHHHHHT
T ss_pred cCCCCcEEEEEEEEECCEEE--EEecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHHHHHHHHHHc
Confidence 35678899999999844322 2333333 5789999999999999988653 899999999999999987
Q ss_pred CC----CCchhHHHHHHHHHHHHhcCccEEEEEec----CCchHHHHHHHhhhccc
Q 037050 74 RT----NSMSKIIWVIFEILEKKKNFQNFKAQHTP----RSCNGIAHFLAKLVLQK 121 (144)
Q Consensus 74 ~~----~~~~~~~~~~~~i~~l~~~~~~~~~~~v~----r~~N~~Ad~LAk~a~~~ 121 (144)
.. ..+.....+++++..++.. ..+.|.||+ |++|..||.|||.+...
T Consensus 91 ~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 91 GWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp TTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred cccccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 21 1223445778888888776 489999999 77999999999999875
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.79 E-value=1.7e-19 Score=124.70 Aligned_cols=116 Identities=11% Similarity=-0.022 Sum_probs=90.6
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcC-------
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNR------- 74 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~------- 74 (144)
..+++.+|+|+|+++..+..... ... ...|++.||++|++.||+.+.+. .+|.|+|||+.+++.+++.
T Consensus 18 ~~n~g~~G~G~v~~~~~~~~~~~--~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~ 92 (166)
T 1ril_A 18 LGNPGPGGWAALLRFHAHEKLLS--GGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRK 92 (166)
T ss_dssp SSTTEEEEEEEEECBTTBCCEEC--CEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHH
T ss_pred cCCCCCEEEEEEEEECCEEEEEe--cCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHh
Confidence 34668899999999865543332 223 35789999999999999988765 4899999999999999881
Q ss_pred --C----CCchhHHHHHHHHHHHHhcCccEEEEEec----CCchHHHHHHHhhhcccCC
Q 037050 75 --T----NSMSKIIWVIFEILEKKKNFQNFKAQHTP----RSCNGIAHFLAKLVLQKKE 123 (144)
Q Consensus 75 --~----~~~~~~~~~~~~i~~l~~~~~~~~~~~v~----r~~N~~Ad~LAk~a~~~~~ 123 (144)
. ..+.....+++++..++..+ .+.|.||+ |++|..||.|||.+.....
T Consensus 93 ~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 93 RGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp TTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred cccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 1 11223456788888887764 89999999 8899999999999988543
No 9
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.79 E-value=1e-18 Score=118.85 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcC-------
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNR------- 74 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~------- 74 (144)
+.+++.+|+|+|+++..+..+ .. ..+|++.||++|++.||+.+ + .+|.|+|||+.+++.+++.
T Consensus 22 ~~n~g~~g~G~v~~~~~~~~~-----~~-~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i~~w~~~W~~~ 91 (150)
T 3qio_A 22 NRETKLGKAGYVTNRGRQKVV-----TL-TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGIITQWIHNWKKR 91 (150)
T ss_dssp CTTTCCEEEEEEETTSCEEEE-----EE-SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCeEEEEEEEcCCEEEE-----eC-CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHHHHHHhhc
Confidence 467888999999998654332 12 36899999999999999974 3 8999999999999999872
Q ss_pred -----CCCchhHHHHHHHHHHHHhcCccEEEEEecCCc----hHHHHHHHhhhccc
Q 037050 75 -----TNSMSKIIWVIFEILEKKKNFQNFKAQHTPRSC----NGIAHFLAKLVLQK 121 (144)
Q Consensus 75 -----~~~~~~~~~~~~~i~~l~~~~~~~~~~~v~r~~----N~~Ad~LAk~a~~~ 121 (144)
...+.....+++++..++.++..+.|.||+++. |..||.||+.|...
T Consensus 92 gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 92 GWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp -----------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred CcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 111223456788887767789999999999997 99999999999874
No 10
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.73 E-value=2.7e-17 Score=113.45 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=86.7
Q ss_pred CCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCC-CCchhH
Q 037050 3 AKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRT-NSMSKI 81 (144)
Q Consensus 3 ~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~-~~~~~~ 81 (144)
.+++.+|+|+++++. |..+.. . .....+|++.||++|++.||+.+ ...+|.|+|||+.+++.+-... ..+...
T Consensus 34 ~npG~~g~G~vi~~~-~~~~~~-~-~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n 107 (165)
T 3p1g_A 34 LQEGQRRAGAAVTTE-TEVIWA-R-ALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVHSEGREIKN 107 (165)
T ss_dssp EETTEEEEEEEEECS-SCEEEE-E-EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSCCCSCCCSS
T ss_pred CCCCceEEEEEEEEC-CEEEEE-e-cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcccCCCcccC
Confidence 467899999999874 444332 2 23456799999999999999988 4789999999999999884221 122233
Q ss_pred HHHHHHHHHHHhcCccEEEEEecCCc---------hHHHHHHHhhhccc
Q 037050 82 IWVIFEILEKKKNFQNFKAQHTPRSC---------NGIAHFLAKLVLQK 121 (144)
Q Consensus 82 ~~~~~~i~~l~~~~~~~~~~~v~r~~---------N~~Ad~LAk~a~~~ 121 (144)
..+++++...+..+..+.|.||+++. |..||.|||.+...
T Consensus 108 ~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 108 KNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp HHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhc
Confidence 45677775555578899999999876 99999999999873
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.73 E-value=3.1e-17 Score=113.08 Aligned_cols=111 Identities=23% Similarity=0.137 Sum_probs=85.4
Q ss_pred eeEEEEEeCCCC--CeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhc------------
Q 037050 8 AGLAVVIRDWER--NCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNN------------ 73 (144)
Q Consensus 8 ~g~G~vird~~g--~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~------------ 73 (144)
+|+|+|++..+. .+........ +..+.+.||+.||..+|+.+...+ .+|.|.|||+.+++.+++
T Consensus 28 aG~Gv~~~~~~~~~~~~~~~~~~t-nn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~ 105 (165)
T 2lsn_A 28 AGMGIVHATYKPEYQVLNQWSIPL-GNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYVAESANKELPYWKSNGFVN 105 (165)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEE-SSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHHHHHHHTHHHHHHHTTSCS
T ss_pred EEEEEEEEECCCccEEeccccCCc-hHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHHHhhhhhhhhhheeccccc
Confidence 999999985443 3333333322 467899999999999999988776 479999999999999975
Q ss_pred CCCCchhHHHHHHHHHHHHhcCccEEEEEec----------CCchHHHHHHHhhhcc
Q 037050 74 RTNSMSKIIWVIFEILEKKKNFQNFKAQHTP----------RSCNGIAHFLAKLVLQ 120 (144)
Q Consensus 74 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~v~----------r~~N~~Ad~LAk~a~~ 120 (144)
....+-....+++++..++..+..++|.||+ |++|..||.||+++..
T Consensus 106 ~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 106 NKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 1112223467788888888888899999998 4469999999999865
No 12
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.71 E-value=6e-18 Score=114.73 Aligned_cols=112 Identities=9% Similarity=-0.023 Sum_probs=81.2
Q ss_pred CceeEEEEEeCCCCCe-eeec-ccccCC--CCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCCCCch-h
Q 037050 6 QVAGLAVVIRDWERNC-VAAA-INTTRF--FGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMS-K 80 (144)
Q Consensus 6 ~~~g~G~vird~~g~~-~~~~-~~~~~~--~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~~-~ 80 (144)
+.+|+|+|+++ +|.. ...+ ....+. ..|++.||++|++.||+.+.+.+. +|.|+|||+.+.+++++...... .
T Consensus 18 g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~~~~~~ 95 (147)
T 2kq2_A 18 GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWKAKNEF 95 (147)
T ss_dssp TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSSCCHHH
T ss_pred CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCccCCcc
Confidence 78999999998 4543 2222 211222 368999999999999999999999 99999999998888877543332 2
Q ss_pred HHHHHHHHHHHHhcCccEEEEEec----CCchHHHHHHHhhhcccC
Q 037050 81 IIWVIFEILEKKKNFQNFKAQHTP----RSCNGIAHFLAKLVLQKK 122 (144)
Q Consensus 81 ~~~~~~~i~~l~~~~~~~~~~~v~----r~~N~~Ad~LAk~a~~~~ 122 (144)
...+.+.++.+.. .++|.||| +++|..||.|||.|....
T Consensus 96 ~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 96 TQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp HHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 2222333333322 78899999 467999999999998843
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.56 E-value=1e-14 Score=117.25 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=83.3
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCCCCchhH
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMSKI 81 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~~~~ 81 (144)
+++++.+|+|+|+++.++. .... ...|++.||+.|++.||+. +..+|.+.|||+.+++.+++.... ..
T Consensus 446 ~~n~g~~g~G~v~~~~~~~-----~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~~--~~ 513 (555)
T 1mu2_A 446 NRQSKEGKAGYVTDRGKDK-----VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTE--SE 513 (555)
T ss_dssp CTTTCCEEEEEEETTSCEE-----EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCSE--ES
T ss_pred cCCCCCceEEEEEEeCCEe-----eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhccccc--cc
Confidence 3567789999999875432 1122 3679999999999999987 779999999999999999974321 22
Q ss_pred HHHHHHHHHHHhcCccEEEEEecCC----chHHHHHHHhhhc
Q 037050 82 IWVIFEILEKKKNFQNFKAQHTPRS----CNGIAHFLAKLVL 119 (144)
Q Consensus 82 ~~~~~~i~~l~~~~~~~~~~~v~r~----~N~~Ad~LAk~a~ 119 (144)
..+++++..++..+..+.+.||+++ +|..||.||+.|+
T Consensus 514 ~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 514 SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 3456677776667889999999985 6999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.53 E-value=1.3e-14 Score=116.74 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=79.1
Q ss_pred CCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCCCCchhHH
Q 037050 3 AKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMSKII 82 (144)
Q Consensus 3 ~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~~~~~ 82 (144)
.+++.+|+|+|+++.....+ .. ...|++.||+.|++.||+.+ ..+|.+.|||+.+++.+++..... ..
T Consensus 450 ~n~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~~~--~~ 517 (557)
T 2zd1_A 450 RETKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPDKS--ES 517 (557)
T ss_dssp TTTCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCSEE--SS
T ss_pred CCCCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCccC--CH
Confidence 56788999999985443222 12 36899999999999999988 689999999999999999864321 23
Q ss_pred HHHHHHHHHHhcCccEEEEEecCC----chHHHHHHHhhh
Q 037050 83 WVIFEILEKKKNFQNFKAQHTPRS----CNGIAHFLAKLV 118 (144)
Q Consensus 83 ~~~~~i~~l~~~~~~~~~~~v~r~----~N~~Ad~LAk~a 118 (144)
.+++++...+..+..+.+.||+++ +|..||.||+.|
T Consensus 518 ~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 518 ELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 455666655555678999999995 599999999975
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.48 E-value=1.7e-13 Score=92.12 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCC
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRT 75 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~ 75 (144)
+.+++.+|+|+|++ .+|..+.... .++ ..|++.||++|++.||+.+.+.+. +|.|+|||+.+++++++..
T Consensus 21 ~gNpG~~G~G~vl~-~~g~~~~~~~-~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~ 90 (142)
T 1zbf_A 21 QGNPGIVEYKGVDT-KTGEVLFERE-PIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKK 90 (142)
T ss_dssp CSSSEEEEEEEEET-TTCCEEEECC-CEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTC
T ss_pred CCCCCCeEEEEEEE-eCCEEEEEec-ccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCC
Confidence 45788999999999 6777665433 344 579999999999999999999999 9999999999999998754
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.44 E-value=5.3e-13 Score=88.52 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=57.6
Q ss_pred CCCCCceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcC
Q 037050 2 DAKKQVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNR 74 (144)
Q Consensus 2 ~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~ 74 (144)
+++|+++|+|+|+++ .|..+... ..++ .+|++.||++|+++||+.+.+.+.+ |.|+|||+.|++++++.
T Consensus 15 ~GNPGp~G~ggV~~~-~g~~~~~~-g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 15 QGNPGIVEYKGVDTK-TGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp ETTTEEEEEEEEETT-TCCEEEEE-EEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHT
T ss_pred CCCCCCeEEEEEEEE-CCEEEEEe-cCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcC
Confidence 367899999988888 66655444 2343 6899999999999999999998876 89999999999999863
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=89.66 E-value=0.31 Score=31.82 Aligned_cols=58 Identities=3% Similarity=-0.062 Sum_probs=40.6
Q ss_pred CceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccH
Q 037050 6 QVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDS 64 (144)
Q Consensus 6 ~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 64 (144)
+...+|.++++.+|.++.+.............||..|+..|... -...+..+.+.+|.
T Consensus 22 s~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 34568999999999887554433333344678999999999865 33456777777763
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=86.94 E-value=0.46 Score=31.44 Aligned_cols=57 Identities=5% Similarity=-0.067 Sum_probs=39.9
Q ss_pred ceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDS 64 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 64 (144)
...+|.++++.+|.++.+...-........-||..|+..|... -...+..+.+.+|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 4468999998899887654433223334578999999999864 33456778888774
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=81.60 E-value=1.4 Score=28.35 Aligned_cols=56 Identities=4% Similarity=-0.069 Sum_probs=39.0
Q ss_pred CceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccH
Q 037050 6 QVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDS 64 (144)
Q Consensus 6 ~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 64 (144)
+...+|.++++.+|.++.+... .......-||..|+..|... -...+..+.+.+|.
T Consensus 25 s~f~VGAal~~~dG~i~~G~Nv--E~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 25 EDYSVASAALSSDGRIFTGVNV--YHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SSSCEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCCEEEEEEecCCeEEEEecc--ccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 4456899999999987764443 33455788999999988863 22346677777763
No 20
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=78.94 E-value=2 Score=28.13 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=38.5
Q ss_pred ceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDS 64 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 64 (144)
...+|.++++.+|.+..+...-.......+-||-.|+..+...-....+..+.+.+|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 4468999999999877655433223334577999999888864222116677777764
No 21
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=77.40 E-value=1.5 Score=29.16 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=35.6
Q ss_pred ceeEEEEEeCCCCCeeeeccccc-CCCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 7 VAGLAVVIRDWERNCVAAAINTT-RFFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
..-+|.||.+ +|.++..+.... ........||..||..+.+..-...+....+++
T Consensus 26 ~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 4556788777 788886555332 122345789999999887654344456666665
No 22
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=77.32 E-value=0.63 Score=36.15 Aligned_cols=65 Identities=17% Similarity=0.017 Sum_probs=43.8
Q ss_pred eEEEEEeC-C--CCCeeeecccccC---CCCChHHHHHHHHHHHHHHHHHh-CCCceEEeccHHHHHHHHhcC
Q 037050 9 GLAVVIRD-W--ERNCVAAAINTTR---FFGNVAMTQAATIEIGMQVALSV-GGYSVLFESDSHEVVELVNNR 74 (144)
Q Consensus 9 g~G~vird-~--~g~~~~~~~~~~~---~~~~~~~aE~~Al~~aL~~a~~~-g~~~v~~esDs~~vv~~l~~~ 74 (144)
|+|+|+.. . .+..+...++.+. ...+..+-|++|+..|++..... .-+++.+.||+. +...++++
T Consensus 357 ~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 357 YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 44555532 2 2456666666554 23566788999999999887654 337899999997 66666554
No 23
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=76.91 E-value=1.6 Score=28.53 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=34.7
Q ss_pred ceeEEEEEeCCCCCeeeecccccC-CCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTR-FFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~-~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
..-+|.||.+ +|.++..+..... .......||..|+..+.+..-...+....+++
T Consensus 23 ~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 4557888877 7888865554322 23345789999999987643333345555554
No 24
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=75.25 E-value=2.3 Score=29.26 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=30.9
Q ss_pred eeEEEEEeCCCCCeeeecccccC-CCCChHHHHHHHHHHHHHHHHHhC
Q 037050 8 AGLAVVIRDWERNCVAAAINTTR-FFGNVAMTQAATIEIGMQVALSVG 54 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~-~~~~~~~aE~~Al~~aL~~a~~~g 54 (144)
.-+|.||.+ +|.++..+..... .......||..||..+.+.+...|
T Consensus 46 ~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~ 92 (189)
T 3dh1_A 46 VPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSG 92 (189)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcC
Confidence 346777775 6888876664321 234567899999999987655444
No 25
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=75.16 E-value=2.1 Score=28.99 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=35.7
Q ss_pred CceeEEEEEeCCCCCeeeeccccc-CCCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 6 QVAGLAVVIRDWERNCVAAAINTT-RFFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 6 ~~~g~G~vird~~g~~~~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
+..-+|.||.+ +|.++..+.... ........||..|+..|.+..-...+....+++
T Consensus 41 ~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 41 GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 34556888877 788886554332 223345689999999887654333456666665
No 26
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=73.93 E-value=2.4 Score=27.80 Aligned_cols=56 Identities=4% Similarity=-0.026 Sum_probs=37.9
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccH
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDS 64 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 64 (144)
-.+|.++++.+|.+..+...-.......+-||-.|+..|+.. -+..+..|.+.+|.
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 367899999999876555533223334577999999988853 22345677777764
No 27
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=73.91 E-value=2.3 Score=28.91 Aligned_cols=55 Identities=7% Similarity=-0.053 Sum_probs=34.7
Q ss_pred ceeEEEEEeCCCCCeeeecccccC-CCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTR-FFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~-~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
..-+|.||.+ +|.++..+..... .......||..||..|.+......+....+++
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 4456787776 7888865554322 23345789999999987654333345555555
No 28
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=72.47 E-value=2.6 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=27.6
Q ss_pred ceeEEEEEeCCCCCeeeecccccC-CC-----------CC--------hHHHHHHHHHHH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTR-FF-----------GN--------VAMTQAATIEIG 46 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~-~~-----------~~--------~~~aE~~Al~~a 46 (144)
..-+|.||.|.+|.++..+....+ ++ .+ ...||..||..+
T Consensus 31 ~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a 90 (178)
T 2w4l_A 31 NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNK 90 (178)
T ss_dssp SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-
T ss_pred CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHh
Confidence 456799999889999876654332 11 23 378999999886
No 29
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=71.43 E-value=5.4 Score=27.48 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=29.6
Q ss_pred eEEEEEeCCC-CCeeeecccccC-CCCChHHHHHHHHHHHHHH
Q 037050 9 GLAVVIRDWE-RNCVAAAINTTR-FFGNVAMTQAATIEIGMQV 49 (144)
Q Consensus 9 g~G~vird~~-g~~~~~~~~~~~-~~~~~~~aE~~Al~~aL~~ 49 (144)
-+|.||.+.+ |.++..+..... .......||..||..|-+.
T Consensus 49 PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 49 PFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp SCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 3588888766 988877765432 2345678999999988664
No 30
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=69.95 E-value=2.9 Score=28.07 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=33.6
Q ss_pred ceeEEEEEeCCCCCeeeeccccc-CCCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 7 VAGLAVVIRDWERNCVAAAINTT-RFFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
..-+|.||.+ +|.++..+.... ........||..||..|.+......+....+++
T Consensus 28 ~~pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 28 EVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred CCcEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 3457777774 788886555332 223345789999999887654333344455544
No 31
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=67.14 E-value=3.5 Score=26.88 Aligned_cols=55 Identities=7% Similarity=-0.078 Sum_probs=36.3
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEecc
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESD 63 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 63 (144)
-.+|.++++.+|.+..+...-.......+-||-.|+..|+..- +..+..+.+-+|
T Consensus 31 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~ 85 (138)
T 3r2n_A 31 FPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDG 85 (138)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred CcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 3578889999998876555433333345679999999887532 234555666655
No 32
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=65.48 E-value=3.9 Score=27.40 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCCeeeecccccC-CCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 9 GLAVVIRDWERNCVAAAINTTR-FFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 9 g~G~vird~~g~~~~~~~~~~~-~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
-+|.||.+ +|.++..+..... .......||..||..+.+..-...+....+++
T Consensus 33 pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 33 PFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 35666664 6888866554322 23346789999999887654333455566655
No 33
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=63.65 E-value=7 Score=25.44 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEecc
Q 037050 9 GLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESD 63 (144)
Q Consensus 9 g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 63 (144)
.+|.++++.+|.+..+...-.......+-||-.|+..+...- ...++.+.+.+|
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~ 77 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLARE 77 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEES
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEec
Confidence 789999999998775554333333446788999998888631 112345566654
No 34
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=62.05 E-value=4.8 Score=26.66 Aligned_cols=55 Identities=5% Similarity=-0.164 Sum_probs=37.0
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEecc
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESD 63 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 63 (144)
-.+|.+++..+|.+..+...-.......+-||-.|+..|+..- +..+..|.+-+|
T Consensus 46 F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~ 100 (150)
T 3mpz_A 46 FPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGP 100 (150)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred CCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 3578899999999876665433333445679999998888631 234566667665
No 35
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=60.53 E-value=17 Score=27.96 Aligned_cols=66 Identities=6% Similarity=-0.215 Sum_probs=42.6
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHH-HHHHHHHHHH--hCC--CceEEeccHHHHHHHHhc
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAAT-IEIGMQVALS--VGG--YSVLFESDSHEVVELVNN 73 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~A-l~~aL~~a~~--~g~--~~v~~esDs~~vv~~l~~ 73 (144)
+.+|+|+...+|....++...-.......+-|++| +..||+.-.. .|- ..+++.||++.+--..+.
T Consensus 335 g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~~~~~ 405 (428)
T 2zd1_B 335 GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY 405 (428)
T ss_dssp TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHHHHhc
Confidence 46788888777654444443333345566778888 9999976543 242 457889999876544443
No 36
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=60.29 E-value=4.7 Score=26.81 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=29.2
Q ss_pred ceeEEEEEe-CCCCCeeeecccccC-CCCChHHHHHHHHHHHHH
Q 037050 7 VAGLAVVIR-DWERNCVAAAINTTR-FFGNVAMTQAATIEIGMQ 48 (144)
Q Consensus 7 ~~g~G~vir-d~~g~~~~~~~~~~~-~~~~~~~aE~~Al~~aL~ 48 (144)
..-+|.||. +.+|.++..+..... .......||..||..+.+
T Consensus 33 ~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 33 GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 345799999 588998866554322 123357899999998864
No 37
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=54.04 E-value=13 Score=26.76 Aligned_cols=55 Identities=15% Similarity=-0.006 Sum_probs=40.5
Q ss_pred ceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSH 65 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~ 65 (144)
+.-+|+| -|.+|.+ +....++ ...-+.+-+.++...+++|.++|++.+.++.-|.
T Consensus 25 P~HVAiI-MDGN~Rw--Ak~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFSt 79 (256)
T 4h8e_A 25 PEHIAII-MDGNGRW--AKKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFST 79 (256)
T ss_dssp CSEEEEE-CCCHHHH--HHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEET
T ss_pred CCEEEEE-cCCCHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEch
Confidence 4456654 4766655 3333344 3457788899999999999999999999998874
No 38
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=51.86 E-value=38 Score=20.64 Aligned_cols=53 Identities=15% Similarity=-0.010 Sum_probs=32.9
Q ss_pred CceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhC-----CCceEEeccHH
Q 037050 6 QVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVG-----GYSVLFESDSH 65 (144)
Q Consensus 6 ~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g-----~~~v~~esDs~ 65 (144)
.++-.|+++-|.+|..+.+.-. .+...|-+...+ .+.|..+- ..-|.+|+|+.
T Consensus 15 ~pgvvGvlc~D~qGLcLg~~G~-----~s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~ 72 (99)
T 3msh_A 15 NPSIVGVLCTDSQGLNLGCRGT-----LSDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNG 72 (99)
T ss_dssp STTEEEEEEECTTCCEEEEEET-----CCGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTE
T ss_pred cCCcEEEEEECCCCCcccccCC-----CCcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCc
Confidence 4566799999999987765432 334444333222 24454443 45799999986
No 39
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=51.84 E-value=16 Score=23.72 Aligned_cols=56 Identities=2% Similarity=-0.021 Sum_probs=37.0
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHh--CCCceEEeccH
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSV--GGYSVLFESDS 64 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~--g~~~v~~esDs 64 (144)
-.+|..+++.+|.+..+...-.......+-||-.|+..++..- +. .+..|.+-+|.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGET 89 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCC
Confidence 3578999999998877666443333445678999988887421 11 35566777664
No 40
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=49.44 E-value=37 Score=23.67 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=34.2
Q ss_pred CceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhC
Q 037050 6 QVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVG 54 (144)
Q Consensus 6 ~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 54 (144)
+.+.=|.+|.|.+|.+.......+ ....+..|++-.+.|||.+...|
T Consensus 144 g~~~R~tFiIDp~g~Ir~~~~~~~--~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 144 GVAYRGLFIIDPHGMLRQITVNDM--PVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp TEECEEEEEECTTSBEEEEEEECT--TCCCCHHHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEEECCCCeEEEEEEecC--CCCCCHHHHHHHHHHhhhHHhcC
Confidence 344447889999998766554333 34567889999999999998776
No 41
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=49.27 E-value=19 Score=24.50 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=32.4
Q ss_pred ceeEEEEEeCCCCCeeeecccccCC----------------CCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRF----------------FGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~----------------~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
..-+|.||.+ +|.++..+....+. +.....||..||..+.+. ...++...+++
T Consensus 60 ~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~--g~~l~g~tlYv 128 (184)
T 2hvw_A 60 RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE--GISANNTEIYV 128 (184)
T ss_dssp TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH--TCCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc--CCCceeEEEEE
Confidence 3446777775 78888655543321 122578999999988653 12345566665
No 42
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=46.80 E-value=45 Score=23.15 Aligned_cols=48 Identities=19% Similarity=-0.011 Sum_probs=35.0
Q ss_pred CceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCC
Q 037050 6 QVAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGG 55 (144)
Q Consensus 6 ~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~ 55 (144)
+.+-=|.+|.|.+|.+........ ....+..|++-++.|||+..+.|.
T Consensus 140 g~~~R~tFiID~~G~Ir~~~v~~~--~~grn~dEiLr~l~AlQ~~~~~~~ 187 (216)
T 3sbc_A 140 GVALRGLFIIDPKGVIRHITINDL--PVGRNVDEALRLVEAFQWTDKNGT 187 (216)
T ss_dssp TEECEEEEEECTTSBEEEEEEECT--TBCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CceeeEEEEECCCCeEEEEEEcCC--CCCCCHHHHHHHHHHhhhHhhcCC
Confidence 333347889999998766544333 345688999999999999988763
No 43
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=45.32 E-value=35 Score=24.05 Aligned_cols=89 Identities=15% Similarity=-0.013 Sum_probs=48.1
Q ss_pred eEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCCCCchhHHHHHHHH
Q 037050 9 GLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRTNSMSKIIWVIFEI 88 (144)
Q Consensus 9 g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~~~~~~~~~~i 88 (144)
-+|+ |-|.+|.+ +....++ ...-+.+=+.++...+++|.++|++.+.++.=|.. -.+ .+..+...+++-+
T Consensus 9 HVAi-IMDGNrRw--Ak~rgl~-r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStE---Nw~---Rp~~EV~~Lm~L~ 78 (225)
T 3ugs_B 9 HLAV-VMDGNRRW--ARAKGFL-AKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTE---NWK---RPKDEIDFIFELL 78 (225)
T ss_dssp EEEE-EECCCC-----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESG---GGG---SCHHHHHHHHHHH
T ss_pred eEEE-eccCcHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEccc---ccC---CCHHHHHHHHHHH
Confidence 4555 55888876 3333344 45678889999999999999999999998864421 011 2234454444433
Q ss_pred HHHH----h--cCccEEEEEecCCc
Q 037050 89 LEKK----K--NFQNFKAQHTPRSC 107 (144)
Q Consensus 89 ~~l~----~--~~~~~~~~~v~r~~ 107 (144)
...+ . .-.++++.+|.+-.
T Consensus 79 ~~~l~~~~~~l~~~~vrvr~iGd~~ 103 (225)
T 3ugs_B 79 DRCLDEALEKFEKNNVRLRAIGDLS 103 (225)
T ss_dssp HHHHHHHHHHSTTTTEEEEEESCGG
T ss_pred HHHHHHHHHHHHHCCcEEEEEeChH
Confidence 3322 1 12568888887654
No 44
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=44.31 E-value=27 Score=23.18 Aligned_cols=39 Identities=5% Similarity=0.005 Sum_probs=27.8
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHH
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQ 48 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~ 48 (144)
-.+|..+++.+|.+..+... +.....+-||-.|+..|+.
T Consensus 51 f~VGAAll~~dG~i~tG~NV--En~~~~lCAEr~Ai~~Avs 89 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNV--YHFNGGPCAELVVLGVAAA 89 (158)
T ss_dssp SCEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCEEEEEcc--ccCCccccHHHHHHHHHHH
Confidence 35899999999987766554 3344456688888877773
No 45
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=41.02 E-value=20 Score=26.38 Aligned_cols=58 Identities=3% Similarity=-0.067 Sum_probs=39.5
Q ss_pred ceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHH-HhCCCceEEeccH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVAL-SVGGYSVLFESDS 64 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~-~~g~~~v~~esDs 64 (144)
...+|..+++.+|.+..+...-.......+-||-.|+..+...-. ...+..+.+.+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 456788999999977665554433455677899999988885311 1235677777765
No 46
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=39.57 E-value=8.3 Score=23.10 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=20.5
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHH
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEI 45 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~ 45 (144)
-+++||.+|.-+..|+.. +|-+|-+-|...
T Consensus 5 NF~Lr~~~G~E~gvFtG~-----~PrqAALKAA~R 34 (93)
T 1t23_A 5 NFVLRDEDGNEHGVFTGK-----QPRQAALKAANR 34 (93)
T ss_dssp EEEECTTTTSCCEEEEES-----STTHHHHHHHHH
T ss_pred cEEEEcCCCcccceEcCC-----ChHHHHHHHhcc
Confidence 378999999988888864 444554444443
No 47
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=39.47 E-value=28 Score=15.59 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCC.
Q 037050 35 VAMTQAATIEIGMQVALSVGG. 55 (144)
Q Consensus 35 ~~~aE~~Al~~aL~~a~~~g~. 55 (144)
+-.||.|.+...-++++..|+
T Consensus 5 p~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 5 TTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHhHHHHHHHHHHcCC.
Confidence 457999999999999988774
No 48
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=37.77 E-value=74 Score=19.88 Aligned_cols=48 Identities=15% Similarity=-0.012 Sum_probs=32.2
Q ss_pred EeCCCCCeeeeccc-ccC----CCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 14 IRDWERNCVAAAIN-TTR----FFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 14 ird~~g~~~~~~~~-~~~----~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
+.|..|.++...+. ..+ .-.++.-|.. |...+.+.+.++|++.|.+..
T Consensus 22 iTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~-aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 22 ITDRQGNALGWATAGGSGFRGSRKSTPFAAQV-AAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EECTTSCCSEEEETGGGSCCGGGGSSHHHHHH-HHHHHHHHHTTSCCCEEEEEE
T ss_pred EEcCCCCEEEEEcCCccccCCCccCCHHHHHH-HHHHHHHHHHHhCCcEEEEEE
Confidence 46788876655431 111 2456666644 556778889999999988876
No 49
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=35.03 E-value=17 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=25.6
Q ss_pred HHHHHHhCCCceEEeccHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 037050 47 MQVALSVGGYSVLFESDSHEVVELVNNRTNSMSKIIWVIFEILEK 91 (144)
Q Consensus 47 L~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~~~~~~~~~~i~~l 91 (144)
.+.+......++.+|||+... ...+....+..+..+++.+..+
T Consensus 180 ~~~v~~ip~drlLlETD~P~~--~~rg~~n~P~~v~~v~~~iA~~ 222 (254)
T 3gg7_A 180 AALIRSMPRDRVLTETDGPFL--ELDGQAALPWDVKSVVEGLSKI 222 (254)
T ss_dssp HHHHHHSCGGGEEECCCTTTS--EETTEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEeCCCCcc--ccCCCCCCHHHHHHHHHHHHHH
Confidence 456677889999999999853 1112122334455555555444
No 50
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=31.37 E-value=12 Score=25.23 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHhc-CccEEEEEecCCchHHHHHHHhhhcccCCeeeeccCCCh
Q 037050 78 MSKIIWVIFEILEKKKN-FQNFKAQHTPRSCNGIAHFLAKLVLQKKEIVIWLDEIPT 133 (144)
Q Consensus 78 ~~~~~~~~~~i~~l~~~-~~~~~~~~v~r~~N~~Ad~LAk~a~~~~~~~~~~~~~P~ 133 (144)
...+..++++ +... |..-+...+.|+||..++.+++.=..... ..|....|.
T Consensus 81 ~~~~~~~l~~---l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~I-P~wInrl~~ 133 (168)
T 2wp7_A 81 EEIFLEYLSS---LGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKI-PSYITDLPS 133 (168)
T ss_dssp HHHHHHHHHH---HHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCC-CHHHHTHHH
T ss_pred HHHHHHHHHH---hhhccCCcccCchhhhccchhHHHHHHHhcCCCC-cHHHHHHHH
Confidence 3444444444 4455 77667778899999999999987655321 234444444
No 51
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=31.31 E-value=1.1e+02 Score=20.03 Aligned_cols=48 Identities=2% Similarity=-0.126 Sum_probs=30.0
Q ss_pred EeCCCCC-eeeecccccC-----CCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 14 IRDWERN-CVAAAINTTR-----FFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 14 ird~~g~-~~~~~~~~~~-----~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
+.|..|. .+...+.... .-.++.-| .+|...+.+.|.++|++.|.+..
T Consensus 44 iTD~~G~~~~~~ssgg~~~k~~r~ksTpyAA-q~aa~~~a~~a~e~Gi~~v~V~v 97 (151)
T 2xzm_K 44 VTDLSGRETLVRVTGGMKVKADREESSPYAA-MQAAIDVVNRCKELKINALHIKL 97 (151)
T ss_dssp EECTTCCSEEEECCHHHHCSSGGGGSCHHHH-HHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EECCCCCEEEEEecCcceEeCCCCcCCHHHH-HHHHHHHHHHHHHcCCeEEEEEE
Confidence 3577776 4444332211 14556666 44556788888999999988864
No 52
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=31.02 E-value=73 Score=20.14 Aligned_cols=35 Identities=6% Similarity=-0.024 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCceEEeccHHHHHHHHhcCC
Q 037050 41 ATIEIGMQVALSVGGYSVLFESDSHEVVELVNNRT 75 (144)
Q Consensus 41 ~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~ 75 (144)
..+..+++.|.+.|+..+.+++++........+.+
T Consensus 127 ~Ll~~~~~~a~~~g~~~i~l~~~n~~a~~~y~k~G 161 (197)
T 3qb8_A 127 KLLKKTIEESSSHGFKYIYGDCTNIISQNMFEKHG 161 (197)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHCC
Confidence 34667788899999999999998887777776643
No 53
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=28.88 E-value=1.9e+02 Score=21.97 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=41.0
Q ss_pred ceeEEEEEeCCC---C-----CeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccHHHHHHHHh
Q 037050 7 VAGLAVVIRDWE---R-----NCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDSHEVVELVN 72 (144)
Q Consensus 7 ~~g~G~vird~~---g-----~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 72 (144)
..-+|-++|+.. | .+.-.+...++ ..++..+|+..+..+.+....+|+..+.++-.+..+.+.+-
T Consensus 107 ~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G-~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~~~~~~~ 179 (464)
T 4g84_A 107 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG-NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMF 179 (464)
T ss_dssp EEEEEEEECCCC------CCSEEEEEEEEEES-CCSTTHHHHHHHHHHHHHHHHHTCCCEEEEEEEHHHHHHHH
T ss_pred eEEEecceeccCCccccCccceeeecceeccC-CccchhhHHHHHHHHHHHHHHhCCCCcceeecchhhHHHHH
Confidence 345788898753 2 12222333333 34566666666777888889999998888877666655543
No 54
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=28.35 E-value=1.3e+02 Score=20.37 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=31.5
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCC
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGG 55 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~ 55 (144)
+.+|.|.+|.+......... ......|++..+.+|+.....|.
T Consensus 130 ~~flID~~G~I~~~~~~~~~--~g~~~~ell~~i~~lq~~~~~~~ 172 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPAT--TGRNAHEILRVLKSLQLTYTTPV 172 (220)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSSE
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhhcCCc
Confidence 67888999998877654332 22367899999999998876653
No 55
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.13 E-value=7.1 Score=21.44 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCccEEEEEecCCchHHHHHHHhhhcc
Q 037050 81 IIWVIFEILEKKKNFQNFKAQHTPRSCNGIAHFLAKLVLQ 120 (144)
Q Consensus 81 ~~~~~~~i~~l~~~~~~~~~~~v~r~~N~~Ad~LAk~a~~ 120 (144)
+..++.++.-.-.- .|...+.|.+|++|+..+-.
T Consensus 5 l~~lLAe~AL~~TG------~HcH~EA~tIA~~L~~~~~~ 38 (61)
T 3ph0_C 5 LKKQLAELALAGTG------HHCHQEAASIADWLAQEECM 38 (61)
T ss_dssp HHHHHHHHHHHHHT------TTCHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHcc------chHHHHHHHHHHHHHhCCCH
Confidence 44455555443222 26778899999999876654
No 56
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=28.05 E-value=45 Score=25.11 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=26.6
Q ss_pred ceeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQ 48 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~ 48 (144)
..-+|.||.+ +|.++..+.... .....||..|+..|-+
T Consensus 35 ~~~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~~ 72 (373)
T 2b3z_A 35 NPLVGAVVVK-DGQIVGMGAHLK---YGEAHAEVHAIHMAGA 72 (373)
T ss_dssp SCCCEEEEES-SSSEEEEEECCS---TTSCCHHHHHHHHHGG
T ss_pred CCcEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHhhH
Confidence 3456777775 788888776543 2356899999988743
No 57
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=27.50 E-value=47 Score=22.44 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=14.1
Q ss_pred eeEEEEEeCCCCCeeeecccccC
Q 037050 8 AGLAVVIRDWERNCVAAAINTTR 30 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~ 30 (144)
.-+|.||. .+|.++..+....+
T Consensus 22 ~~VGAVIV-~dg~Iia~G~N~~~ 43 (193)
T 1vq2_A 22 WKVGAVIE-KNGRIISTGYNGSP 43 (193)
T ss_dssp BCCEEEEE-ETTEEEEEEECBCC
T ss_pred CCEEEEEE-ECCEEEEEEeCCCC
Confidence 34566666 57888877765544
No 58
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=27.09 E-value=36 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=25.5
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHH
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGM 47 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL 47 (144)
.-+|.||.+ +|.++..+.... .....||..|+..|.
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 36 PPVGAVVVK-DGRIIAEGFHPY---FGGPHAERMAIESAR 71 (360)
T ss_dssp CCCEEEEEE-TTEEEEEEECCS---TTSCCHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHHH
Confidence 346777765 788887766543 235689999999883
No 59
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=26.61 E-value=1.4e+02 Score=20.85 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=31.5
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhC
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVG 54 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 54 (144)
+.++.|.+|.+........ .......|++.++.+|+...+.+
T Consensus 184 ~tflID~~G~I~~~~~~~~--~~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 184 GLFIIDDKGILRQITLNDL--PVGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEEEECTTSBEEEEEEECT--TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEecCC--CCCCCHHHHHHHHHhhccccccC
Confidence 5688899999877655432 23446789999999999887765
No 60
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=25.93 E-value=93 Score=18.74 Aligned_cols=33 Identities=6% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCceEEeccHHHHHHHHhc
Q 037050 41 ATIEIGMQVALSVGGYSVLFESDSHEVVELVNN 73 (144)
Q Consensus 41 ~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~ 73 (144)
..+...++.+.+.|...+.+++++........+
T Consensus 95 ~ll~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k 127 (152)
T 2g3a_A 95 KLLAMAEEEARKRGCMGAYIDTMNPDALRTYER 127 (152)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCccHHHHHHH
Confidence 344566778888999999999985544444443
No 61
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.80 E-value=1.4e+02 Score=19.25 Aligned_cols=47 Identities=13% Similarity=-0.074 Sum_probs=30.1
Q ss_pred eCCCCC-eeeecccccC-----CCCChHHHHHHHHHHHHHHHHHhCCCceEEec
Q 037050 15 RDWERN-CVAAAINTTR-----FFGNVAMTQAATIEIGMQVALSVGGYSVLFES 62 (144)
Q Consensus 15 rd~~g~-~~~~~~~~~~-----~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 62 (144)
.|..|. .+...+.-.. .-.++.-|...| ..+.+.|.++|++.|.+..
T Consensus 31 TD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa-~~~~~~a~e~Gi~~v~V~v 83 (137)
T 3j20_M 31 TDITGAETISRWSGGMVVKADRDEPSPYAAMLAA-RRAAEEALEKGIVGVHIRV 83 (137)
T ss_dssp EESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHH-HHHHHHHHHHTEEEEEEEE
T ss_pred EcCCCCEEEEEEccceeeecCCccCCHHHHHHHH-HHHHHHHHHcCCeEEEEEE
Confidence 578883 5544332211 235666665555 6788889999999888763
No 62
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=25.58 E-value=1.4e+02 Score=20.88 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=31.0
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhC
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVG 54 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 54 (144)
+.+|.|.+|.+......... ...+..|++.++.+|+.....|
T Consensus 126 ~~fIID~dG~I~~~~~~~~~--~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPME--LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCCc--ccchhHHHHHHHHHHHhccccC
Confidence 57888999998776654322 2235789999999999887665
No 63
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=24.64 E-value=1.4e+02 Score=20.55 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=30.2
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhC
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVG 54 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 54 (144)
+.+|.|.+|.+......... ......|++..+.+|+.....+
T Consensus 129 ~~fiID~~G~I~~~~~~~~~--~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPAT--TGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhccCC
Confidence 66788999998877654322 1235679999999998876643
No 64
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=24.38 E-value=1.6e+02 Score=20.31 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=31.4
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCC
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGG 55 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~ 55 (144)
+.++.|.+|.++........ ......|++..+.+|+...+.|.
T Consensus 170 ~~flID~~G~I~~~~~~~~~--~~~~~~eil~~l~~lq~~~~~~~ 212 (240)
T 3qpm_A 170 GLFIIDEKGVLRQITMNDLP--VGRSVDETLRLVQAFQYTDKHGE 212 (240)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHSC
T ss_pred eEEEEcCCCeEEEEEecCCC--CCCCHHHHHHHHHHhhhhhhcCC
Confidence 56888999998876554332 23456799999999998877653
No 65
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=23.49 E-value=40 Score=24.21 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=38.7
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCceEEeccH
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVGGYSVLFESDS 64 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 64 (144)
--+|+|+ |.+|.+ +....++ ...-+.+=+.++..-+++|.++|++.+.++.=|
T Consensus 19 ~HVAiIM-DGNrRw--Ak~rgl~-r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 19 RHVAIIM-DGNGRW--AKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp SEEEEEE-CCHHHH--HHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred CEEEEEe-cCcHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 4566544 767765 3333344 346778889999999999999999999999544
No 66
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=23.10 E-value=46 Score=25.35 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=25.8
Q ss_pred eeEEEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHH
Q 037050 8 AGLAVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGM 47 (144)
Q Consensus 8 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL 47 (144)
.-+|.||.+ +|.++..+.... .....||..|+..+-
T Consensus 52 ~~vGaviv~-~g~ii~~g~n~~---~g~~HAE~~Ai~~a~ 87 (402)
T 2g6v_A 52 PNVGCVIVK-DGEIVGEGYHQR---AGEPHAEVHALRMAG 87 (402)
T ss_dssp CCCEEEEEE-TTEEEEEEECCC---TTSCCHHHHHHHHHG
T ss_pred CCEEEEEEE-CCEEEEEEeCCC---CCccHHHHHHHHHhh
Confidence 346777776 788887776543 346789999998773
No 67
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=22.63 E-value=76 Score=20.50 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCceEEeccHH
Q 037050 44 EIGMQVALSVGGYSVLFESDSH 65 (144)
Q Consensus 44 ~~aL~~a~~~g~~~v~~esDs~ 65 (144)
..+++.|.+.|+.+|.+.+|..
T Consensus 81 ~~a~~~a~~~G~~rv~L~~~~~ 102 (141)
T 2d4p_A 81 RAVVKSAYDAGVYEVALHLDPE 102 (141)
T ss_dssp HHHHHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHCCCCEEEEEeccc
Confidence 4667899999999999976654
No 68
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=21.03 E-value=2e+02 Score=19.47 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=30.7
Q ss_pred EEEEeCCCCCeeeecccccCCCCChHHHHHHHHHHHHHHHHHhC
Q 037050 11 AVVIRDWERNCVAAAINTTRFFGNVAMTQAATIEIGMQVALSVG 54 (144)
Q Consensus 11 G~vird~~g~~~~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 54 (144)
+.+|.|.+|.+......... ......|++..+.+|+.....+
T Consensus 133 ~~fiID~~G~I~~~~~~~~~--~gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 133 VVFVFGPDKKLKLSILYPAT--TGRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EEEEECTTSBEEEEEECCTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhccCC
Confidence 67888999998877654322 1235789999999998876654
No 69
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=20.44 E-value=1.8e+02 Score=18.67 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.3
Q ss_pred CCCceeEEEEEeCCCCCeeeecccccC
Q 037050 4 KKQVAGLAVVIRDWERNCVAAAINTTR 30 (144)
Q Consensus 4 ~~~~~g~G~vird~~g~~~~~~~~~~~ 30 (144)
.++..++++=|+|.+|.++.+.+...+
T Consensus 118 ~~g~~~iAaPI~~~~g~~~aalsv~~p 144 (176)
T 3obf_A 118 SIEEVGVASPVYDHRGNMVASVLIPAP 144 (176)
T ss_dssp STTEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ccCcEEEEEEEECCCCCEEEEEEeEee
Confidence 357789999999999998887775433
No 70
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=20.43 E-value=72 Score=23.35 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=28.7
Q ss_pred ceeEEEEEeCCCCCeeeecccccCC--CCChHHHHHHHHHHHHH
Q 037050 7 VAGLAVVIRDWERNCVAAAINTTRF--FGNVAMTQAATIEIGMQ 48 (144)
Q Consensus 7 ~~g~G~vird~~g~~~~~~~~~~~~--~~~~~~aE~~Al~~aL~ 48 (144)
.-.+|.++++.+|.+..+...-... ..-..-||-.|+..+..
T Consensus 70 ~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~ 113 (294)
T 1ctt_A 70 NFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWL 113 (294)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHH
Confidence 3467899999999877655532221 11256899999988885
Done!