BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037051
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 38/296 (12%)
Query: 114 LKSLHWDKVATNVDHSMVWNEINDGSLR--FDDEQIENLF-GYST-----INRRLYERSK 165
LKS +W K+ N VW EI+D + D E +E F Y +N ++
Sbjct: 17 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 76
Query: 166 TSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALL---DGQGLSIDILE 222
++ S+ EL +++ R+ QN I+L L +S EI A+L + + L D+LE
Sbjct: 77 DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 136
Query: 223 KLAKLSSSQDD----------------ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEIL 266
+L K + D A+ FLF + + I R+ ++ F+ + +
Sbjct: 137 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSR-INHYQQRLQSLYFKKKFAERVA 195
Query: 267 QLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK 326
++K ++A+ G E+ +LLE +L GN MN G RGNA F +S+L K++D K
Sbjct: 196 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTK 254
Query: 327 STNGKT-TLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRI---ELDTFINT 378
S+ K TLL++++ +NKY P+V L+ E ++ +A ++ ELD I+T
Sbjct: 255 SSIDKNITLLHYLITIVENKY-----PSVLNLNEELRDIPQAAKVNMTELDKEIST 305
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 38/296 (12%)
Query: 114 LKSLHWDKVATNVDHSMVWNEINDGSLR--FDDEQIENLF-GYST-----INRRLYERSK 165
LKS +W K+ N VW EI+D + D E +E F Y +N ++
Sbjct: 15 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 74
Query: 166 TSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALL---DGQGLSIDILE 222
++ S+ EL +++ R+ QN I+L L +S EI A+L + + L D+LE
Sbjct: 75 DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 134
Query: 223 KLAKLSSSQDD----------------ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEIL 266
+L K + D A+ FLF + + I R+ ++ F+ + +
Sbjct: 135 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSR-INHYQQRLQSLYFKKKFAERVA 193
Query: 267 QLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK 326
++K ++A+ G E+ +LLE +L GN MN G RGNA F +S+L K++D K
Sbjct: 194 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTK 252
Query: 327 STNGKT-TLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRI---ELDTFINT 378
S+ K TLL++++ +NKY P+V L+ E ++ +A ++ ELD I+T
Sbjct: 253 SSIDKNITLLHYLITIVENKY-----PSVLNLNEELRDIPQAAKVNMTELDKEIST 303
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 41/341 (12%)
Query: 93 PSQATLPPIRSSSRTVVGHVKLKSLHWDK-VATNVDHSMVWNEINDGSLRFDDEQIENLF 151
P+ LP + + V+L+ +W K VA ++ W ++ + RF++ ++
Sbjct: 8 PAAPVLPFGLTPKKVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKED--RFENNEL---- 61
Query: 152 GYSTINRRLYERSKTSMSSGSSNAAPTAELFIL---------EPRKCQNTAIVLRSLAIS 202
++ + ++KTS + + + + QN +I L S +
Sbjct: 62 -FAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMP 120
Query: 203 QKEIIEALLD---------------GQGLSIDILEKLAKLSSSQDD-ANTFLFHI-LKVI 245
+EI +L+ Q + L+ L++L DD A + F + + +
Sbjct: 121 YQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTV 180
Query: 246 PSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAG 305
P R+NA+LF+ + ++ +K + ++ ELR F LLE L GN MNAG
Sbjct: 181 PRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAG 240
Query: 306 TSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVN 365
+ A FN+S L KL D KS + K TLL+F+ E +N + P V +E +V
Sbjct: 241 SRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDH-----PEVLKFPDELAHVE 295
Query: 366 KAVRIELDTFINTYSALASRVVEIWELVTH--CASSEKGGF 404
KA R+ + + + ++ ++ V + A+ EK F
Sbjct: 296 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKF 336
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 141/323 (43%), Gaps = 41/323 (12%)
Query: 111 HVKLKSLHWDK-VATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMS 169
V+L+ +W K VA ++ W ++ + RF++ ++ ++ + ++KTS +
Sbjct: 7 EVQLRRPNWSKFVAEDLSQDCFWTKVKED--RFENNEL-----FAKLTLAFSAQTKTSKA 59
Query: 170 SGSSNAAPTAELFIL---------EPRKCQNTAIVLRSLAISQKEIIEALLD-------- 212
+ + + QN +I L S + +EI +L+
Sbjct: 60 KKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTE 119
Query: 213 -------GQGLSIDILEKLAKLSSSQDD-ANTFLFHI-LKVIPSAFTRVNAMLFRSNYKS 263
Q + L+ L++L DD A + F + + +P R+NA+LF+ +
Sbjct: 120 SMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSE 179
Query: 264 EILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLS 323
++ +K + ++ ELR F LLE L GN MNAG+ A FN+S L KL
Sbjct: 180 QVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLR 239
Query: 324 DVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALA 383
D KS + K TLL+F+ E +N + P V +E +V KA R+ + + +
Sbjct: 240 DTKSADQKMTLLHFLAELCENDH-----PEVLKFPDELAHVEKASRVSAENLQKSLDQMK 294
Query: 384 SRVVEIWELVTH--CASSEKGGF 404
++ ++ V + A+ EK F
Sbjct: 295 KQIADVERDVQNFPAATDEKDKF 317
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 24/237 (10%)
Query: 187 RKCQNTAIVLRSLAISQKEIIEALLD---------------GQGLSIDILEKLAKLSSSQ 231
+ QN +I L S + +EI +L+ Q + L+ L++L
Sbjct: 15 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 74
Query: 232 DD-ANTFLFHI-LKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFL 289
DD A + F + + +P R+NA+LF+ + ++ +K + ++ ELR F
Sbjct: 75 DDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFS 134
Query: 290 KLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQ 349
LLE L GN MNAG+ A FN+S L KL D KS + K TLL+F+ E +N +
Sbjct: 135 SLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDH--- 191
Query: 350 RLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTH--CASSEKGGF 404
P V +E +V KA R+ + + + ++ ++ V + A+ EK F
Sbjct: 192 --PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKF 246
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 44/292 (15%)
Query: 113 KLKSLHWDKVATNVDHSMVWNEINDGSL--RFDDEQIENLFGYSTINRRL---YERSKTS 167
+L +W + N + V++E++D + D ++ E LF L ++KT+
Sbjct: 18 RLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTA 77
Query: 168 MSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEAL--LDGQGLSIDILEKLA 225
+ S ++ +LE + +N AI LR S +EI A+ D Q L +D +E L
Sbjct: 78 QKAAS-------KVTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLM 130
Query: 226 KLSSSQ---------------------DDANTFLFHILKVIPSAFTRVNAMLFRSNYKSE 264
+ ++ +D LF ++ + R+ M F N++
Sbjct: 131 RFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQ---RMAGMAFLGNFQDN 187
Query: 265 ILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSD 324
+ L L A+ +++ ++LE IL GN MN+ + RG F L +L L D
Sbjct: 188 LQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNS-SKRGAVYGFKLQSLDLLLD 246
Query: 325 VKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFI 376
KST+ K TLL+F+ KY P + E + V KA + L+ +
Sbjct: 247 TKSTDRKMTLLHFIALTVKEKY-----PELANFWQELHFVEKAAAVSLENVL 293
>pdb|1TQQ|A Chain A, Structure Of Tolc In Complex With Hexamminecobalt
pdb|1TQQ|B Chain B, Structure Of Tolc In Complex With Hexamminecobalt
pdb|1TQQ|C Chain C, Structure Of Tolc In Complex With Hexamminecobalt
Length = 471
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 241 ILKVIPSAFTRVNAMLFRSN-YKSEILQLKESLQALEMGYNELRTRVIFLKLLEA 294
+++ + S+F +NA + N YK ++ + SL A+E GY + TR I + +L+A
Sbjct: 323 VVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGY-SVGTRTI-VDVLDA 375
>pdb|1XML|B Chain B, Structure Of Human Dcps
pdb|1XML|A Chain A, Structure Of Human Dcps
Length = 342
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 314 FNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNV 364
++L R+L+DVK TT++Y E+ KYL+Q L + +++ N+
Sbjct: 121 YHLFPPRQLNDVK-----TTVVYPATEKHLQKYLRQDLRLIRETGDDYRNI 166
>pdb|1XMM|B Chain B, Structure Of Human Dcps Bound To M7gdp
pdb|1XMM|A Chain A, Structure Of Human Dcps Bound To M7gdp
pdb|1XMM|C Chain C, Structure Of Human Dcps Bound To M7gdp
pdb|1XMM|D Chain D, Structure Of Human Dcps Bound To M7gdp
Length = 342
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 314 FNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNV 364
++L R+L+DVK TT++Y E+ KYL+Q L + +++ N+
Sbjct: 121 YHLFPPRQLNDVK-----TTVVYPATEKHLQKYLRQDLRLIRETGDDYRNI 166
>pdb|1ST0|B Chain B, Structure Of Dcps Bound To M7gpppg
pdb|1ST0|A Chain A, Structure Of Dcps Bound To M7gpppg
pdb|1ST4|B Chain B, Structure Of Dcps Bound To M7gpppa
pdb|1ST4|A Chain A, Structure Of Dcps Bound To M7gpppa
Length = 337
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 314 FNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNV 364
++L R+L+DVK TT++Y E+ KYL+Q L + +++ N+
Sbjct: 116 YHLFPPRQLNDVK-----TTVVYPATEKHLQKYLRQDLRLIRETGDDYRNI 161
>pdb|3BL7|A Chain A, Synthetic Gene Encoded Dcps Bound To Inhibitor Dg156844
pdb|3BL7|B Chain B, Synthetic Gene Encoded Dcps Bound To Inhibitor Dg156844
pdb|3BL9|A Chain A, Synthetic Gene Encoded Dcps Bound To Inhibitor Dg157493
pdb|3BL9|B Chain B, Synthetic Gene Encoded Dcps Bound To Inhibitor Dg157493
pdb|3BLA|A Chain A, Synthetic Gene Encoded Dcps Bound To Inhibitor Dg153249
pdb|3BLA|B Chain B, Synthetic Gene Encoded Dcps Bound To Inhibitor Dg153249
Length = 301
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 314 FNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNV 364
++L R+L+DVK TT++Y E+ KYL+Q L + +++ N+
Sbjct: 80 YHLFPPRQLNDVK-----TTVVYPATEKHLQKYLRQDLRLIRETGDDYRNI 125
>pdb|2WMZ|A Chain A, Structure Of A Mutated Tolc
pdb|2WMZ|B Chain B, Structure Of A Mutated Tolc
pdb|2WMZ|C Chain C, Structure Of A Mutated Tolc
Length = 428
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 241 ILKVIPSAFTRVNAMLFRSN-YKSEILQLKESLQALEMGY 279
+++ + S+F +NA + N YK ++ + SL A+E GY
Sbjct: 323 VVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGY 362
>pdb|1VLR|A Chain A, Crystal Structure Of Mrna Decapping Enzyme (Dcps) From Mus
Musculus At 1.83 A Resolution
pdb|1VLR|B Chain B, Crystal Structure Of Mrna Decapping Enzyme (Dcps) From Mus
Musculus At 1.83 A Resolution
Length = 350
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 314 FNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNV 364
+NL R LSD+K TT++Y E+ KY++Q L + +++ +
Sbjct: 127 YNLFPPRHLSDIK-----TTVVYPATEKHLQKYMRQDLRLIRETGDDYRTI 172
>pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|B Chain B, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|C Chain C, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
Length = 428
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 241 ILKVIPSAFTRVNAMLFRSN-YKSEILQLKESLQALEMGYNELRTRVI 287
+++ + S+F +NA + N YK ++ + SL A E GY+ + TR I
Sbjct: 323 VVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGYS-VGTRTI 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,354,354
Number of Sequences: 62578
Number of extensions: 431610
Number of successful extensions: 1119
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 23
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)