Query 037051
Match_columns 492
No_of_seqs 273 out of 1188
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 8.4E-70 1.8E-74 569.3 36.1 355 108-474 620-997 (1102)
2 smart00498 FH2 Formin Homology 100.0 2E-68 4.3E-73 563.7 37.0 354 108-474 4-378 (432)
3 PF02181 FH2: Formin Homology 100.0 7.6E-66 1.6E-70 535.1 32.0 345 107-467 4-370 (370)
4 KOG1925 Rac1 GTPase effector F 100.0 1.1E-49 2.3E-54 402.1 30.1 346 108-475 278-652 (817)
5 KOG1923 Rac1 GTPase effector F 100.0 5.3E-50 1.1E-54 422.8 27.0 345 110-474 367-734 (830)
6 KOG1922 Rho GTPase effector BN 100.0 1.5E-45 3.3E-50 418.8 34.5 366 110-480 392-793 (833)
7 KOG1924 RhoA GTPase effector D 99.2 2.7E-09 5.9E-14 114.7 24.0 88 215-327 712-799 (1102)
8 KOG1923 Rac1 GTPase effector F 96.0 0.013 2.8E-07 64.6 6.5 19 286-304 521-539 (830)
9 smart00498 FH2 Formin Homology 95.9 0.036 7.9E-07 59.2 9.7 108 365-473 319-431 (432)
10 PRK15319 AIDA autotransporter- 94.5 0.051 1.1E-06 65.4 5.6 7 130-136 1763-1769(2039)
11 COG5178 PRP8 U5 snRNP spliceos 93.3 0.064 1.4E-06 61.4 3.3 20 308-327 540-559 (2365)
12 PHA03247 large tegument protei 91.7 0.58 1.2E-05 58.4 8.6 10 127-136 3024-3033(3151)
13 KOG2675 Adenylate cyclase-asso 89.3 0.48 1E-05 49.6 4.6 20 181-200 391-411 (480)
14 COG5178 PRP8 U5 snRNP spliceos 89.3 0.26 5.7E-06 56.6 2.9 18 279-296 629-646 (2365)
15 PRK09752 adhesin; Provisional 88.6 0.46 1E-05 55.5 4.3 8 129-136 985-992 (1250)
16 KOG4672 Uncharacterized conser 88.3 2.3 5E-05 44.2 8.6 7 204-210 473-479 (487)
17 KOG4590 Signal transduction pr 83.8 3.1 6.7E-05 43.9 7.1 17 17-33 117-134 (409)
18 PF15195 TMEM210: TMEM210 fami 82.9 1.5 3.3E-05 36.3 3.4 21 14-35 51-71 (116)
19 PF12325 TMF_TATA_bd: TATA ele 80.5 23 0.0005 31.0 10.2 52 413-469 64-115 (120)
20 PRK10132 hypothetical protein; 80.2 10 0.00022 32.6 7.8 72 373-444 15-86 (108)
21 PF01213 CAP_N: Adenylate cycl 80.0 0.65 1.4E-05 47.4 0.5 8 130-137 264-271 (312)
22 COG4575 ElaB Uncharacterized c 78.6 13 0.00029 31.5 7.7 72 373-444 11-83 (104)
23 KOG2675 Adenylate cyclase-asso 77.7 2.8 6.1E-05 44.0 4.3 8 233-240 459-466 (480)
24 PRK15313 autotransport protein 77.5 3.6 7.7E-05 47.4 5.4 6 130-135 678-683 (955)
25 PRK10404 hypothetical protein; 75.0 18 0.0004 30.6 7.8 72 373-444 8-80 (101)
26 PRK15313 autotransport protein 74.0 4.8 0.0001 46.5 5.2 11 313-323 771-781 (955)
27 KOG1922 Rho GTPase effector BN 73.8 10 0.00022 44.0 8.1 72 402-474 666-738 (833)
28 KOG4673 Transcription factor T 72.3 47 0.001 37.2 11.9 54 417-475 904-957 (961)
29 KOG4672 Uncharacterized conser 70.2 18 0.0004 37.8 7.9 8 234-241 476-483 (487)
30 KOG0994 Extracellular matrix g 69.3 2.4E+02 0.0052 33.9 16.9 41 186-226 1470-1518(1758)
31 PHA03211 serine/threonine kina 68.1 8 0.00017 41.7 5.2 13 272-284 266-278 (461)
32 KOG0994 Extracellular matrix g 68.0 74 0.0016 37.9 12.6 20 287-306 1469-1488(1758)
33 KOG4849 mRNA cleavage factor I 66.0 13 0.00029 38.0 5.8 9 143-151 358-366 (498)
34 smart00503 SynN Syntaxin N-ter 65.1 82 0.0018 26.5 10.0 60 373-432 11-72 (117)
35 KOG4849 mRNA cleavage factor I 64.6 14 0.00031 37.8 5.7 9 203-211 374-382 (498)
36 KOG1925 Rac1 GTPase effector F 63.0 12 0.00026 40.1 5.1 28 402-429 630-658 (817)
37 KOG0559 Dihydrolipoamide succi 62.6 25 0.00054 36.4 7.0 6 308-313 377-382 (457)
38 PF10805 DUF2730: Protein of u 62.5 67 0.0014 27.3 8.8 69 367-438 32-100 (106)
39 PF10234 Cluap1: Clusterin-ass 61.6 1.3E+02 0.0027 30.2 11.7 32 312-343 106-145 (267)
40 KOG4590 Signal transduction pr 56.7 26 0.00057 37.1 6.3 10 17-26 75-84 (409)
41 cd00179 SynN Syntaxin N-termin 56.6 1.2E+02 0.0025 26.9 9.9 61 373-433 9-71 (151)
42 PF05957 DUF883: Bacterial pro 55.4 52 0.0011 27.1 6.8 71 374-444 2-73 (94)
43 KOG2391 Vacuolar sorting prote 54.5 33 0.00071 35.2 6.3 40 243-284 235-274 (365)
44 PF04420 CHD5: CHD5-like prote 53.5 68 0.0015 29.4 7.9 65 373-439 36-102 (161)
45 KOG4302 Microtubule-associated 53.0 1.5E+02 0.0032 33.5 11.7 35 402-436 229-263 (660)
46 PF06120 Phage_HK97_TLTM: Tail 51.6 2.2E+02 0.0049 29.0 11.8 27 453-479 123-149 (301)
47 PF12325 TMF_TATA_bd: TATA ele 47.8 1.5E+02 0.0033 25.9 8.7 33 406-438 85-117 (120)
48 PF07174 FAP: Fibronectin-atta 47.5 50 0.0011 32.9 6.2 10 190-199 160-169 (297)
49 KOG2391 Vacuolar sorting prote 45.4 40 0.00086 34.6 5.3 20 262-281 259-278 (365)
50 PF10147 CR6_interact: Growth 45.3 3E+02 0.0064 26.7 12.0 72 406-481 131-206 (217)
51 PRK11637 AmiB activator; Provi 43.9 3.7E+02 0.008 28.6 12.8 32 408-439 101-132 (428)
52 PLN02983 biotin carboxyl carri 43.8 37 0.00079 33.8 4.7 6 128-133 205-210 (274)
53 KOG4307 RNA binding protein RB 43.7 60 0.0013 36.5 6.6 12 49-60 177-188 (944)
54 KOG0804 Cytoplasmic Zn-finger 43.5 1.3E+02 0.0028 32.2 8.8 40 402-441 413-452 (493)
55 PHA03246 large tegument protei 43.0 9.3E+02 0.02 31.8 17.3 160 264-455 1649-1821(3095)
56 PF10458 Val_tRNA-synt_C: Valy 42.3 1.5E+02 0.0032 22.8 7.0 61 375-435 2-64 (66)
57 PF06013 WXG100: Proteins of 1 41.4 1.6E+02 0.0035 22.6 10.0 25 401-425 46-70 (86)
58 PF03276 Gag_spuma: Spumavirus 40.9 70 0.0015 34.9 6.5 8 145-152 292-299 (582)
59 TIGR00383 corA magnesium Mg(2+ 40.6 2.4E+02 0.0052 28.4 10.4 55 333-391 134-189 (318)
60 PF07544 Med9: RNA polymerase 39.7 2E+02 0.0044 23.2 7.7 31 368-398 19-49 (83)
61 PRK09546 zntB zinc transporter 38.2 2.4E+02 0.0053 28.6 10.1 11 333-343 142-152 (324)
62 KOG0933 Structural maintenance 38.2 1.7E+02 0.0037 34.5 9.3 32 273-306 599-630 (1174)
63 KOG1962 B-cell receptor-associ 37.9 3.9E+02 0.0084 25.9 14.9 70 234-305 11-80 (216)
64 PF01544 CorA: CorA-like Mg2+ 37.2 2.6E+02 0.0057 27.3 9.9 103 332-438 109-220 (292)
65 PF04740 LXG: LXG domain of WX 37.0 3.5E+02 0.0076 25.2 13.3 99 377-475 17-120 (204)
66 cd07637 BAR_ACAP3 The Bin/Amph 36.8 1.9E+02 0.0042 27.5 8.4 106 369-479 1-112 (200)
67 PRK14948 DNA polymerase III su 36.4 90 0.0019 35.2 6.9 7 146-152 603-609 (620)
68 PF07462 MSP1_C: Merozoite sur 36.1 83 0.0018 34.4 6.2 65 370-436 487-562 (574)
69 PF04625 DEC-1_N: DEC-1 protei 35.4 66 0.0014 32.7 5.0 26 261-286 284-309 (407)
70 cd07595 BAR_RhoGAP_Rich-like T 35.2 3.5E+02 0.0076 26.6 10.1 30 413-442 161-190 (244)
71 cd07588 BAR_Amphiphysin The Bi 35.1 3.1E+02 0.0068 26.4 9.6 20 455-474 92-111 (211)
72 COG3352 FlaC Putative archaeal 34.0 3E+02 0.0065 25.1 8.4 53 372-428 74-126 (157)
73 PF08359 TetR_C_4: YsiA-like p 33.6 1.5E+02 0.0032 25.5 6.6 28 452-479 55-82 (133)
74 PF04156 IncA: IncA protein; 33.1 4E+02 0.0086 24.6 11.1 30 408-437 121-150 (191)
75 cd07639 BAR_ACAP1 The Bin/Amph 32.8 4.5E+02 0.0097 25.1 12.0 25 371-395 3-27 (200)
76 PF05518 Totivirus_coat: Totiv 32.8 1.5E+02 0.0033 33.9 7.7 10 15-24 634-643 (759)
77 cd07663 BAR_SNX5 The Bin/Amphi 32.4 4.8E+02 0.01 25.3 11.2 73 400-472 20-98 (218)
78 cd00280 TRFH Telomeric Repeat 31.8 2E+02 0.0042 27.4 7.2 65 323-392 47-112 (200)
79 PF14523 Syntaxin_2: Syntaxin- 31.6 2.9E+02 0.0063 22.6 7.9 52 377-428 3-55 (102)
80 PF04625 DEC-1_N: DEC-1 protei 31.5 66 0.0014 32.7 4.3 9 310-318 314-322 (407)
81 PF03999 MAP65_ASE1: Microtubu 31.3 43 0.00093 37.6 3.4 37 406-442 282-318 (619)
82 PF10392 COG5: Golgi transport 31.2 3.4E+02 0.0073 23.8 8.5 66 358-440 61-126 (132)
83 PF12238 MSA-2c: Merozoite sur 30.8 1.2E+02 0.0027 29.0 5.9 20 5-24 82-101 (205)
84 PF14712 Snapin_Pallidin: Snap 30.7 2.7E+02 0.0058 22.5 7.3 67 403-473 7-73 (92)
85 KOG1785 Tyrosine kinase negati 30.1 74 0.0016 33.4 4.5 7 21-27 446-452 (563)
86 PF04048 Sec8_exocyst: Sec8 ex 30.1 2.2E+02 0.0048 25.4 7.2 76 358-433 18-102 (142)
87 PF06304 DUF1048: Protein of u 30.0 1.6E+02 0.0035 25.1 5.8 16 452-467 67-83 (103)
88 PRK12270 kgd alpha-ketoglutara 29.9 1.5E+02 0.0033 35.2 7.3 17 311-327 423-439 (1228)
89 PF10368 YkyA: Putative cell-w 28.1 5.4E+02 0.012 24.6 10.0 62 406-472 118-179 (204)
90 PF01698 FLO_LFY: Floricaula / 27.8 20 0.00043 37.4 0.0 8 406-413 300-307 (386)
91 KOG0905 Phosphoinositide 3-kin 27.7 2.2E+02 0.0048 34.4 8.1 18 11-28 81-98 (1639)
92 cd07612 BAR_Bin2 The Bin/Amphi 27.7 2E+02 0.0042 27.8 6.7 19 372-390 21-39 (211)
93 PF06013 WXG100: Proteins of 1 27.3 2.8E+02 0.0061 21.1 9.5 61 406-473 7-67 (86)
94 PF04728 LPP: Lipoprotein leuc 26.8 2.8E+02 0.0061 20.9 7.9 24 372-395 5-28 (56)
95 cd07636 BAR_GRAF The Bin/Amphi 26.6 5.8E+02 0.013 24.5 10.7 71 403-473 93-163 (207)
96 PRK12270 kgd alpha-ketoglutara 26.2 2.1E+02 0.0045 34.1 7.5 25 450-474 795-819 (1228)
97 PF07765 KIP1: KIP1-like prote 25.8 3.5E+02 0.0075 21.7 7.0 49 374-426 15-63 (74)
98 PLN02983 biotin carboxyl carri 25.7 1.1E+02 0.0024 30.5 4.8 7 114-120 204-210 (274)
99 PF05008 V-SNARE: Vesicle tran 25.7 3.3E+02 0.007 21.3 7.2 51 377-427 25-78 (79)
100 PF14618 DUF4452: Domain of un 25.4 1.2E+02 0.0026 28.0 4.5 13 22-34 53-65 (165)
101 PF11559 ADIP: Afadin- and alp 25.4 4.9E+02 0.011 23.2 9.5 27 369-395 65-91 (151)
102 PF08336 P4Ha_N: Prolyl 4-Hydr 25.1 4.4E+02 0.0096 23.0 8.2 67 403-474 15-81 (134)
103 KOG2129 Uncharacterized conser 24.9 2.3E+02 0.005 30.1 6.9 102 375-483 251-355 (552)
104 PF05377 FlaC_arch: Flagella a 24.9 3E+02 0.0066 20.7 7.0 18 374-391 4-21 (55)
105 cd07621 BAR_SNX5_6 The Bin/Amp 24.8 3.3E+02 0.0072 26.4 7.8 40 399-438 20-59 (219)
106 PHA00728 hypothetical protein 24.8 1.9E+02 0.0042 25.2 5.4 26 371-396 6-31 (151)
107 PF15455 Pro-rich_19: Proline- 24.6 2.6E+02 0.0056 28.0 6.9 15 108-122 328-342 (357)
108 KOG1785 Tyrosine kinase negati 24.4 1.4E+02 0.0031 31.4 5.4 10 8-17 414-423 (563)
109 KOG4603 TBP-1 interacting prot 24.4 5.9E+02 0.013 23.8 8.8 82 359-446 107-188 (201)
110 cd07628 BAR_Atg24p The Bin/Amp 24.4 3.5E+02 0.0075 25.3 7.7 16 380-395 35-50 (185)
111 PF01698 FLO_LFY: Floricaula / 24.2 25 0.00055 36.6 0.0 9 215-223 148-156 (386)
112 PF05278 PEARLI-4: Arabidopsis 24.2 3.5E+02 0.0077 27.1 7.9 42 402-443 199-240 (269)
113 cd07603 BAR_ACAPs The Bin/Amph 24.0 2.3E+02 0.005 27.0 6.5 19 373-391 5-23 (200)
114 PF07889 DUF1664: Protein of u 23.7 3.6E+02 0.0078 23.8 7.1 27 407-433 93-119 (126)
115 PF03114 BAR: BAR domain; Int 23.7 5.8E+02 0.013 23.5 13.2 191 261-478 24-229 (229)
116 PF07439 DUF1515: Protein of u 23.5 4.8E+02 0.01 22.5 7.6 49 376-425 7-55 (112)
117 PF13907 DUF4208: Domain of un 23.5 34 0.00074 28.8 0.6 42 264-305 21-62 (100)
118 PF10392 COG5: Golgi transport 23.2 3.9E+02 0.0085 23.4 7.4 63 374-437 30-92 (132)
119 PRK14849 putative lipoprotein/ 23.1 57 0.0012 40.8 2.6 8 129-136 1523-1530(1806)
120 PF07200 Mod_r: Modifier of ru 23.0 5.4E+02 0.012 22.8 9.6 42 420-473 99-140 (150)
121 PRK11020 hypothetical protein; 22.9 5E+02 0.011 22.5 8.4 52 375-426 3-54 (118)
122 cd07590 BAR_Bin3 The Bin/Amphi 22.8 4.8E+02 0.011 25.3 8.5 10 459-468 100-109 (225)
123 KOG1945 Protein phosphatase 1 22.6 69 0.0015 33.1 2.7 18 310-330 300-317 (377)
124 KOG2196 Nuclear porin [Nuclear 22.1 7.7E+02 0.017 24.3 11.1 96 373-471 137-233 (254)
125 PF03915 AIP3: Actin interacti 22.0 6.8E+02 0.015 26.8 10.1 25 412-436 255-279 (424)
126 PF06008 Laminin_I: Laminin Do 22.0 7.6E+02 0.016 24.2 12.1 143 315-481 1-143 (264)
127 PRK11637 AmiB activator; Provi 21.8 9.7E+02 0.021 25.4 12.9 28 406-433 106-133 (428)
128 KOG3208 SNARE protein GS28 [In 21.7 4.5E+02 0.0098 25.5 7.8 28 451-478 90-117 (231)
129 PF11932 DUF3450: Protein of u 21.7 4E+02 0.0087 26.0 7.9 58 371-433 43-100 (251)
130 PF05596 Taeniidae_ag: Taeniid 21.6 3.5E+02 0.0077 20.9 5.8 41 424-474 7-47 (64)
131 PRK14954 DNA polymerase III su 21.6 2.5E+02 0.0054 31.7 7.1 11 142-152 461-471 (620)
132 COG4985 ABC-type phosphate tra 21.6 7.4E+02 0.016 24.3 9.2 35 402-436 213-247 (289)
133 PF08855 DUF1825: Domain of un 21.5 5.3E+02 0.011 22.2 10.7 93 373-473 8-107 (108)
134 cd07617 BAR_Endophilin_B2 The 21.4 7.6E+02 0.016 24.0 15.5 59 415-478 159-217 (220)
135 KOG0213 Splicing factor 3b, su 21.3 1.3E+03 0.029 26.8 14.4 27 450-476 918-944 (1172)
136 KOG4025 Putative apoptosis rel 21.1 6.3E+02 0.014 23.5 8.2 25 204-228 54-78 (207)
137 COG4046 Uncharacterized protei 21.0 4.3E+02 0.0093 27.2 7.8 65 409-476 53-118 (368)
138 PRK09039 hypothetical protein; 20.9 4.4E+02 0.0095 27.3 8.3 28 370-397 137-164 (343)
139 cd07603 BAR_ACAPs The Bin/Amph 20.5 7.4E+02 0.016 23.5 15.1 27 260-286 6-32 (200)
140 PRK00083 frr ribosome recyclin 20.5 6.2E+02 0.013 23.8 8.5 66 268-346 13-86 (185)
141 PF10456 BAR_3_WASP_bdg: WASP- 20.4 8.2E+02 0.018 24.0 9.7 17 402-418 205-221 (237)
142 cd07667 BAR_SNX30 The Bin/Amph 20.3 8.3E+02 0.018 24.0 10.9 23 282-305 4-26 (240)
143 PF05377 FlaC_arch: Flagella a 20.2 3.9E+02 0.0084 20.1 5.6 29 412-440 16-44 (55)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=8.4e-70 Score=569.32 Aligned_cols=355 Identities=24% Similarity=0.384 Sum_probs=320.0
Q ss_pred cccccccccccccccccc-cCCCccccccCCCCcccC--hHHHHHhhccccccccccccccccCCCCCCCCCCCcceecc
Q 037051 108 VVGHVKLKSLHWDKVATN-VDHSMVWNEINDGSLRFD--DEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFIL 184 (492)
Q Consensus 108 ~~p~~~lk~l~W~ki~~~-~~~~TiW~~l~~~~~~lD--~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~lL 184 (492)
+.|.++|++++|.+|.+. ...+++|.+++++++.-| +..|+..|+.+...++.... ...+++..+++.+...||
T Consensus 620 ~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~---~eekkt~~kKk~kel~il 696 (1102)
T KOG1924|consen 620 YKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEG---GEEKKTGTKKKVKELRIL 696 (1102)
T ss_pred CCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccc---cccccchhhhhhhhheec
Confidence 556778999999999654 458899999999877543 46888889987554433221 111222235667788999
Q ss_pred chhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc----------------chHhHHHHHHHhhhc
Q 037051 185 EPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ----------------DDANTFLFHILKVIP 246 (492)
Q Consensus 185 D~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~----------------~~aE~Fl~~ll~~ip 246 (492)
|+|.+||++|+|++|++++++|+.+|+ |+++|+...|++|++.+|.. .+.|||...| ..|+
T Consensus 697 DsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm-~~vk 775 (1102)
T KOG1924|consen 697 DSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVM-SQVK 775 (1102)
T ss_pred chHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHH-hhcc
Confidence 999999999999999999999999999 67899999999999999976 4789999988 5899
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhcccccc
Q 037051 247 SAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK 326 (492)
Q Consensus 247 ~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~K 326 (492)
++.-||.+++|+.+|.+.+++|++.+..+..||++||+|++|.++|++||.+|||||+|+.+.+|+||.+++|.||.|||
T Consensus 776 rL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTK 855 (1102)
T KOG1924|consen 776 RLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTK 855 (1102)
T ss_pred ccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCch
Q 037051 327 STNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCAS--SEKGGF 404 (492)
Q Consensus 327 s~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~--~e~d~f 404 (492)
++|+++||||||++.++++| |+++.|.+||.||.+|++|+.+.|...+..++..++.++.-+..+.. .+.|.|
T Consensus 856 saDqk~TLLHfLae~~e~ky-----pd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF 930 (1102)
T KOG1924|consen 856 SADQKTTLLHFLAEICEEKY-----PDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKF 930 (1102)
T ss_pred ccchhhHHHHHHHHHHHHhC-----hhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhH
Confidence 99999999999999999876 99999999999999999999999999999999999999998887642 356999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 405 LKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 405 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
.++|..|.++|..++..|...+..+++.|+.+.+||..|+++ .+.++||+.+++|-++|..|.+|+.
T Consensus 931 ~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kk---ysmEEFFaDi~tFrnaf~ea~~en~ 997 (1102)
T KOG1924|consen 931 VEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKK---YSMEEFFADIRTFRNAFLEAVAENE 997 (1102)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCccc---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 6799999999999999999999985
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2e-68 Score=563.68 Aligned_cols=354 Identities=32% Similarity=0.478 Sum_probs=317.8
Q ss_pred cccccccccccccccccccCCCccccccCCCCcccChHHHHHhhccccccccccccccccCCCCCCCCCCCcceeccchh
Q 037051 108 VVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPR 187 (492)
Q Consensus 108 ~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~lLD~k 187 (492)
+.|+++||++||++|+.+++++|||+++++.. .+|+++||++|+.+........ +....+....+++++.++|||+|
T Consensus 4 ~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~--~~~~~~~~~~~~~~~~v~ild~k 80 (432)
T smart00498 4 PKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASK--DVSEKKSILKKKVSQEFKILDPK 80 (432)
T ss_pred CCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccc--cccccccccccccccceEeechh
Confidence 45778999999999998889999999999875 7999999999998654321111 00000011123456789999999
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc-----------------chHhHHHHHHHhhhccH
Q 037051 188 KCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ-----------------DDANTFLFHILKVIPSA 248 (492)
Q Consensus 188 RaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~-----------------~~aE~Fl~~ll~~ip~~ 248 (492)
|+|||+|+|++|++++++|++||+ |...|+.|.|+.|++++||. +++|||++.|+ .||++
T Consensus 81 rs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~-~ip~~ 159 (432)
T smart00498 81 RSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLIS-NIPYL 159 (432)
T ss_pred HHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHh-CCCCH
Confidence 999999999999999999999998 56699999999999999997 67999999996 79999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhccccccCC
Q 037051 249 FTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKST 328 (492)
Q Consensus 249 ~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~Ks~ 328 (492)
.+||+||+|+.+|++.+.++.+.|.++..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++
T Consensus 160 ~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~ 239 (432)
T smart00498 160 EERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSA 239 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCchHH
Q 037051 329 NGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCAS--SEKGGFLK 406 (492)
Q Consensus 329 d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~--~e~d~f~~ 406 (492)
|+++||||||++++++++ |++++|.+||.+|..|++++ ++|.+++++|.+++..++..+..... +..|.|..
T Consensus 240 d~k~tLLhylv~~i~~~~-----p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~ 313 (432)
T smart00498 240 DNKTTLLHFLVKIIRKKY-----PDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIE 313 (432)
T ss_pred CCCccHHHHHHHHHHHhC-----hhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHH
Confidence 999999999999987654 89999999999999999999 99999999999999999876665543 23489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 407 EMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 407 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
+|.+|+..|..+++.|+..+.++.+.|.+++.||||++++ ..+++||++|.+|+..|.+|++|+.
T Consensus 314 ~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~---~~~~efF~~f~~F~~~f~ka~~en~ 378 (432)
T smart00498 314 VMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD---TSPEEFFKDFNEFLKEFSKAAEENI 378 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 5799999999999999999999985
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=7.6e-66 Score=535.05 Aligned_cols=345 Identities=32% Similarity=0.536 Sum_probs=296.7
Q ss_pred ccccccccccccccccccccCCCccccccCCCC--cccChHHHHHhhccccccccccccccccCCCCCCCCCCCcceecc
Q 037051 107 TVVGHVKLKSLHWDKVATNVDHSMVWNEINDGS--LRFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFIL 184 (492)
Q Consensus 107 ~~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~--~~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~lL 184 (492)
.+.|+.+||++||++|+....++|||+++.+.. ..+|+++||++|+.+........ ......++++.++||
T Consensus 4 ~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~-------~~~~~~~~~~~~~iL 76 (370)
T PF02181_consen 4 KPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK-------KQASKKKKKKKISIL 76 (370)
T ss_dssp ----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH-----------HCCCCTTCCESSS
T ss_pred CCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc-------ccccccccccccccc
Confidence 356789999999999998899999999998864 36899999999998765432211 011234678899999
Q ss_pred chhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc----------------chHhHHHHHHHhhhc
Q 037051 185 EPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ----------------DDANTFLFHILKVIP 246 (492)
Q Consensus 185 D~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~----------------~~aE~Fl~~ll~~ip 246 (492)
|+||+|||+|+|++|++++++|++||+ |...|+.|.|+.|++++||. +++|+|++.++ .||
T Consensus 77 d~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~-~ip 155 (370)
T PF02181_consen 77 DPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELS-KIP 155 (370)
T ss_dssp -HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHT-TST
T ss_pred chHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHH-HHH
Confidence 999999999999999999999999998 67789999999999999997 68999999995 799
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhcccccc
Q 037051 247 SAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK 326 (492)
Q Consensus 247 ~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~K 326 (492)
++++||+||+|+.+|++.+.++.+.|..+..||++|++|..|+++|++||++|||||+|+.+|+|+||+|++|.||.+||
T Consensus 156 ~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~K 235 (370)
T PF02181_consen 156 RLKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTK 235 (370)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCch
Q 037051 327 STNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCAS--SEKGGF 404 (492)
Q Consensus 327 s~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~--~e~d~f 404 (492)
++|+++||||||+++++++ .|++..|.+||.+|..|++++++++.+++.+|++++..++.+++.... +..+.|
T Consensus 236 s~d~~~tLL~~l~~~~~~~-----~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f 310 (370)
T PF02181_consen 236 SNDNKTTLLHYLVKIVEEK-----FPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKF 310 (370)
T ss_dssp -STTTSBHHHHHHHHHHTT-----SGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-TH
T ss_pred cccCCchHHHHHHHHHHhc-----ChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 9999999999999998764 589999999999999999999999999999999999999999988765 456999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHH
Q 037051 405 LKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVD 467 (492)
Q Consensus 405 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~ 467 (492)
...|..|++.++.++..|++.+.++.+.|++++.||||+++. .++++||++|.+|+.+|+
T Consensus 311 ~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~---~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 311 KEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKK---MSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTC---CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999875 679999999999999986
No 4
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.1e-49 Score=402.05 Aligned_cols=346 Identities=21% Similarity=0.318 Sum_probs=304.9
Q ss_pred cccccccccccccccccc--------cCCCccccccCCCCcccChHHHHHhhccccccccccccccccCCCCCCCCCCCc
Q 037051 108 VVGHVKLKSLHWDKVATN--------VDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTA 179 (492)
Q Consensus 108 ~~p~~~lk~l~W~ki~~~--------~~~~TiW~~l~~~~~~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~ 179 (492)
.+...++-+|||..+.-. ...+|+|..++.. .+|...||.+|..++.+. ..+++.. ..+.+
T Consensus 278 ~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~--~~D~~r~~~LFEsr~~~~--------~P~KK~~-E~r~~ 346 (817)
T KOG1925|consen 278 LPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPV--SVDTARLEHLFESRAKEV--------LPSKKAG-EGRRT 346 (817)
T ss_pred ccccCceeEEEeecceecCCCCCccccccchhhhccCcc--eecHHHHHHHHHHhhhhh--------ccchhhc-cccee
Confidence 344566778999988432 3478999999985 489999999999765321 1122221 24567
Q ss_pred ceeccchhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc------------------chHhHHHH
Q 037051 180 ELFILEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ------------------DDANTFLF 239 (492)
Q Consensus 180 ~i~lLD~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~------------------~~aE~Fl~ 239 (492)
..+|||.||+|.|+|.|.+|.- ..-|..||+ |.-.++.|.|++|+.++||+ +.|||||+
T Consensus 347 ~~tVL~~KRt~AINIGLT~LPP-v~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLL 425 (817)
T KOG1925|consen 347 MTTVLDPKRTNAINIGLTTLPP-VHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLL 425 (817)
T ss_pred eeeecCcccccceeeccccCCc-hhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHH
Confidence 7899999999999999999952 345888887 67799999999999999997 78999999
Q ss_pred HHHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhh
Q 037051 240 HILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSAL 319 (492)
Q Consensus 240 ~ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL 319 (492)
.| ++|+.+.+||+.|.|+..|+..-.+|.+.|-.++.|++++-++..|+.+|.++|+||||||+. +++||.|+.|
T Consensus 426 tL-SsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYL 500 (817)
T KOG1925|consen 426 TL-SSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYL 500 (817)
T ss_pred HH-hhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhh
Confidence 98 689999999999999999999999999999999999999999999999999999999999997 7899999999
Q ss_pred hccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 037051 320 RKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASS 399 (492)
Q Consensus 320 ~KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~ 399 (492)
.|..++|++..|.||||+||.++-+ +||+-.++++|+..|.+.++||+++|..++.+|+++++.-++.+..+..+
T Consensus 501 eKvsEVKDtV~KqsLlhHlc~~vVE-----~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakh 575 (817)
T KOG1925|consen 501 EKVSEVKDTVRKQSLLHHLCSLVVE-----TFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKH 575 (817)
T ss_pred hhchhhcchHHHHHHHHHHHHHHHH-----hCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 9999999999999999999998644 57999999999999999999999999999999999999999988888766
Q ss_pred C-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHH
Q 037051 400 E-KGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISR 475 (492)
Q Consensus 400 e-~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r 475 (492)
| .......|..|+.+|..+|..|+..+.++.+.|+.++-|||..+....+..+++||.++.+|.-.|+..++.+-+
T Consensus 576 e~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQ 652 (817)
T KOG1925|consen 576 ELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQ 652 (817)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5 367889999999999999999999999999999999999999887766789999999999999999998887743
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=5.3e-50 Score=422.85 Aligned_cols=345 Identities=23% Similarity=0.336 Sum_probs=306.4
Q ss_pred cccccccccccccccccCCCccccccCCCCc--ccChHHHHHhhccccccccccccccccCCCCCCCCCCCcceeccchh
Q 037051 110 GHVKLKSLHWDKVATNVDHSMVWNEINDGSL--RFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPR 187 (492)
Q Consensus 110 p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~--~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~lLD~k 187 (492)
.+.++..++|..+.+..+++|++.+++|+.| .+|++++|+.|..-..+...... ...+.....+...+++++|.+
T Consensus 367 tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e---~~a~~~~~~ka~qk~tLle~~ 443 (830)
T KOG1923|consen 367 TKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDE---SSAVSKAMTKAPQKRTLLEQR 443 (830)
T ss_pred ccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhh---HHHHHHHhhhhhhhhhHHHHH
Confidence 3556778999999999999999999999876 58999999999872211111110 001111223446789999999
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc-------------------chHhHHHHHHHhhhc
Q 037051 188 KCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ-------------------DDANTFLFHILKVIP 246 (492)
Q Consensus 188 RaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~-------------------~~aE~Fl~~ll~~ip 246 (492)
|.+|++|.++ ..+..++|+.||- |...|+.+-++.|.+++||+ .+.++|++.+ +.|+
T Consensus 444 R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~l-skIE 521 (830)
T KOG1923|consen 444 RLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSL-SKIE 521 (830)
T ss_pred HHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhh-hhhh
Confidence 9999999999 9999999999995 89999999999999999998 4567899998 6899
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhcccccc
Q 037051 247 SAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK 326 (492)
Q Consensus 247 ~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~K 326 (492)
++++|+..|-|+.+|.+.+.-+.+++..+..|+..+++|++||.+|++||++|||||.+ .||.++||+|.+|.-|.++|
T Consensus 522 rle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll~tk 600 (830)
T KOG1923|consen 522 RLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLLDTK 600 (830)
T ss_pred hhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999997 67999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 037051 327 STNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLK 406 (492)
Q Consensus 327 s~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~ 406 (492)
++|.++|||||++..+++++ |++..|.+||.-+++|+.|+++.+..|+.+|.+++..++++.+....+ .
T Consensus 601 StDr~~tLlh~iv~~i~ekl-----p~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~~------~ 669 (830)
T KOG1923|consen 601 STDRSMTLLHYIVLTIAEKL-----PALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGLD------V 669 (830)
T ss_pred CCccceeeeehhhHHHHHhh-----HHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhccc------h
Confidence 99999999999999988764 899999999999999999999999999999999999999887654332 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 407 EMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 407 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
.|.+|++..+.++++|++.++.+.+.|+.+++||||.++. ..|..||..|..|..+|+.+..+++
T Consensus 670 iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~---tppt~ff~~f~~F~~~~k~~~~ene 734 (830)
T KOG1923|consen 670 ILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKT---TPPTVFFQLFVRFVRAYKMARQENE 734 (830)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCC---CCCCccHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999865 7899999999999999999998764
No 6
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.5e-45 Score=418.79 Aligned_cols=366 Identities=37% Similarity=0.542 Sum_probs=318.2
Q ss_pred cccccccccccccccccCCCccccccCCCCcccCh---HHHHHhhccccccccccccccccCCCCCCCCCCCcceeccch
Q 037051 110 GHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDD---EQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEP 186 (492)
Q Consensus 110 p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~~lD~---~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~lLD~ 186 (492)
|..+++++||+++..+.....+|+.+....+..|. +.+|.+|+........... ++... .........+.++|+
T Consensus 392 p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~ 468 (833)
T KOG1922|consen 392 PKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGG-DTGRE--EKTAVEKKRLKVLDP 468 (833)
T ss_pred CCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCC-CCccc--cccccccccccccCC
Confidence 67899999999999999999999999998887777 8999999876543221110 01000 111122367899999
Q ss_pred hhHHHHHHHHhhcCCCHHHHHHHHHh--CCCCCHHHHHHHHhhCCCc----------------chHhHHHHHHHhhhccH
Q 037051 187 RKCQNTAIVLRSLAISQKEIIEALLD--GQGLSIDILEKLAKLSSSQ----------------DDANTFLFHILKVIPSA 248 (492)
Q Consensus 187 kRaqNi~I~L~~lk~s~~ei~~aild--~~~L~~e~l~~L~~~~Pt~----------------~~aE~Fl~~ll~~ip~~ 248 (492)
+++||++|+|+++++..+++.+||++ .+.+..++|++|.+++|++ +.+|+|+.+.+..||.+
T Consensus 469 r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~ 548 (833)
T KOG1922|consen 469 RRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEF 548 (833)
T ss_pred CCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHH
Confidence 99999999999999999999999985 4469999999999999997 57899998866679999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhccccccCC
Q 037051 249 FTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKST 328 (492)
Q Consensus 249 ~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~Ks~ 328 (492)
..|+++++|+..|...+..+...+..+..||.+++++..|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.
T Consensus 549 ~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~ 628 (833)
T KOG1922|consen 549 EERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSS 628 (833)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHH-HHh----------hhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 037051 329 NGKTTLLYFVVEQ-RDN----------KYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVT-HC 396 (492)
Q Consensus 329 d~k~tLLh~lv~~-ve~----------~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~-~~ 396 (492)
++++++||+++.. ++. +++..++|.+.+|.+||.+|.+|++++++.+.+++..|.+++..+.+.+. ..
T Consensus 629 ~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~ 708 (833)
T KOG1922|consen 629 DGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTAS 708 (833)
T ss_pred cccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9997766665544 322 23345788999999999999999999999999999999999999999995 44
Q ss_pred ccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 397 ASS---EKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 397 ~~~---e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
..+ ..+.|...|..|++.|+.++..+..++..+...+..+.+|||++++ . ..++.++|.++++|+..|+++|+|+
T Consensus 709 ~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~-~-~~~~~~~f~~~r~fl~~~~~~~~e~ 786 (833)
T KOG1922|consen 709 KNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPK-E-EITPEQVFSILRDFLRTFDKAHEEN 786 (833)
T ss_pred cCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4689999999999999999999999999999999999999999986 2 4789999999999999999999999
Q ss_pred HHHHhhc
Q 037051 474 SRNLQKK 480 (492)
Q Consensus 474 ~r~~~kk 480 (492)
++..+|.
T Consensus 787 ~~~~~k~ 793 (833)
T KOG1922|consen 787 KKAEEKE 793 (833)
T ss_pred HHHHHHh
Confidence 7765544
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=2.7e-09 Score=114.73 Aligned_cols=88 Identities=14% Similarity=0.275 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHhhCCCcchHhHHHHHHHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHH
Q 037051 215 GLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEA 294 (492)
Q Consensus 215 ~L~~e~l~~L~~~~Pt~~~aE~Fl~~ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~ 294 (492)
.++-+.|+..+-=+-+.--.|.|+..|++..|--++ | ..|..+++-.+.|.+.+.|..+|.-
T Consensus 712 rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~-l-----------------~~L~e~Kaeye~l~e~EQF~vvm~~ 773 (1102)
T KOG1924|consen 712 RMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQ-L-----------------NKLSELKAEYEDLPEPEQFVVVMSQ 773 (1102)
T ss_pred cCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHH-H-----------------HHHHHHHHhccCCCCHHHHhHHHhh
Confidence 466666665544444444556677777666663221 2 2333344444455555555444443
Q ss_pred HHHhcccccCCCCCCCcccccchhhhccccccC
Q 037051 295 ILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKS 327 (492)
Q Consensus 295 iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~Ks 327 (492)
|=.+- .|-.+.=|+|..=..+.++|-
T Consensus 774 vkrL~-------pRL~~ilFKl~fse~vnniKP 799 (1102)
T KOG1924|consen 774 VKRLR-------PRLSAILFKLTFSEQVNNIKP 799 (1102)
T ss_pred ccccC-------hhHHHHHHHhhHHHHHhhcCh
Confidence 32221 334456677777777766664
No 8
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.99 E-value=0.013 Score=64.60 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHhcccccC
Q 037051 286 VIFLKLLEAILKAGNKMNA 304 (492)
Q Consensus 286 ~~l~~lL~~iL~iGN~LN~ 304 (492)
+++-.=|.++-.+|||.-.
T Consensus 521 Erle~klatM~~m~nF~ds 539 (830)
T KOG1923|consen 521 ERLEEKLATMEFMGNFPDS 539 (830)
T ss_pred hhhHHHHHHHHHHHhchhh
Confidence 4444555666666776543
No 9
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=95.95 E-value=0.036 Score=59.18 Aligned_cols=108 Identities=22% Similarity=0.343 Sum_probs=85.3
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 365 NKAVRIELDTFINTYSALASRVVEIWELVTHCASSEK-----GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKY 439 (492)
Q Consensus 365 ~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~-----d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~y 439 (492)
..++..+++.|...+..+...+..+...+-....... ..|..-|..|...+++.+..++.+..+.....+++.+|
T Consensus 319 ~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~~~~ 398 (432)
T smart00498 319 LKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKETTEY 398 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777888889999999998888888777644332211 35667777777788888888888888899999999999
Q ss_pred ccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 440 YQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 440 FgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
|+..+... ...+..+|.++.+|..++++.|+++
T Consensus 399 ~~~~~~~~-~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 399 EQSSSRQK-ERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred hhhhhhhh-hccchhhhhhhhhhhhhHHHHHHhh
Confidence 99865332 2578889999999999999999875
No 10
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.50 E-value=0.051 Score=65.37 Aligned_cols=7 Identities=29% Similarity=0.862 Sum_probs=3.9
Q ss_pred ccccccC
Q 037051 130 MVWNEIN 136 (492)
Q Consensus 130 TiW~~l~ 136 (492)
.+|..+.
T Consensus 1763 s~W~Ri~ 1769 (2039)
T PRK15319 1763 SVWARFK 1769 (2039)
T ss_pred CeEEEEe
Confidence 4566554
No 11
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.31 E-value=0.064 Score=61.37 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=8.3
Q ss_pred CCCcccccchhhhccccccC
Q 037051 308 RGNAQRFNLSALRKLSDVKS 327 (492)
Q Consensus 308 rg~A~GFkL~sL~KL~d~Ks 327 (492)
|.+-.-..|+.=..|.-||+
T Consensus 540 RKgLtYLhLDyNfNLKPtkt 559 (2365)
T COG5178 540 RKGLTYLHLDYNFNLKPTKT 559 (2365)
T ss_pred hcCCeEEEeecccCcccccc
Confidence 33333344444444444444
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=91.71 E-value=0.58 Score=58.35 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.4
Q ss_pred CCCccccccC
Q 037051 127 DHSMVWNEIN 136 (492)
Q Consensus 127 ~~~TiW~~l~ 136 (492)
++++.|...+
T Consensus 3024 l~q~~~~~~~ 3033 (3151)
T PHA03247 3024 LKQTLWPPDD 3033 (3151)
T ss_pred cccCCCCCCC
Confidence 4556665443
No 13
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=89.33 E-value=0.48 Score=49.56 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=11.4
Q ss_pred eeccchhhHHHHHH-HHhhcC
Q 037051 181 LFILEPRKCQNTAI-VLRSLA 200 (492)
Q Consensus 181 i~lLD~kRaqNi~I-~L~~lk 200 (492)
|...|-=.+||+.| ++.++.
T Consensus 391 Va~~eiinc~~v~iQv~g~~P 411 (480)
T KOG2675|consen 391 VAIVEIINCQDVQIQVMGSVP 411 (480)
T ss_pred ceeeEEeeccceeeEEcccCC
Confidence 34455557777777 344443
No 14
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.32 E-value=0.26 Score=56.65 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=9.1
Q ss_pred HHHHHcchhHHHHHHHHH
Q 037051 279 YNELRTRVIFLKLLEAIL 296 (492)
Q Consensus 279 ~~~l~~S~~l~~lL~~iL 296 (492)
+.+++.++.++.+..+..
T Consensus 629 M~QIraCKd~KhliyY~f 646 (2365)
T COG5178 629 MKQIRACKDWKHLIYYAF 646 (2365)
T ss_pred HHHHHHhhhHHHHHHHHh
Confidence 345555555555555443
No 15
>PRK09752 adhesin; Provisional
Probab=88.65 E-value=0.46 Score=55.51 Aligned_cols=8 Identities=0% Similarity=-0.184 Sum_probs=4.3
Q ss_pred CccccccC
Q 037051 129 SMVWNEIN 136 (492)
Q Consensus 129 ~TiW~~l~ 136 (492)
.++|..+.
T Consensus 985 ~s~W~R~~ 992 (1250)
T PRK09752 985 QTLNLRVI 992 (1250)
T ss_pred cceEEEee
Confidence 35666543
No 16
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=88.33 E-value=2.3 Score=44.21 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 037051 204 KEIIEAL 210 (492)
Q Consensus 204 ~ei~~ai 210 (492)
++.-.++
T Consensus 473 DDaY~~F 479 (487)
T KOG4672|consen 473 DDAYNAF 479 (487)
T ss_pred hHHHHHH
Confidence 3333333
No 17
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=83.78 E-value=3.1 Score=43.85 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.8
Q ss_pred ccCCCcccch-hhhccch
Q 037051 17 VFNPSFEEDE-EKCMDIT 33 (492)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~ 33 (492)
--+||++.|+ ....+.+
T Consensus 117 ~n~~s~~e~~~~~~~~~~ 134 (409)
T KOG4590|consen 117 TNGPSQSEDPVQTRLTRM 134 (409)
T ss_pred CCCCCcccccchhhhhhh
Confidence 3468888888 4444443
No 18
>PF15195 TMEM210: TMEM210 family
Probab=82.87 E-value=1.5 Score=36.26 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=14.6
Q ss_pred CccccCCCcccchhhhccchhh
Q 037051 14 PKIVFNPSFEEDEEKCMDITTV 35 (492)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (492)
-+++.-.-|+.+||. ||+-.+
T Consensus 51 ~~~Rlv~~~GvQEdr-mDLh~V 71 (116)
T PF15195_consen 51 MDNRLVGHFGVQEDR-MDLHTV 71 (116)
T ss_pred cccchhhcccccccc-ccceee
Confidence 345555679999886 888654
No 19
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.47 E-value=23 Score=31.00 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHH
Q 037051 413 EECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTV 469 (492)
Q Consensus 413 ~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a 469 (492)
.....++..|+..+.++...|..+++.|||.. ...+++=..|.+.-.+|+.=
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~-----E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKS-----EEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHH
Confidence 45557788899999999999999999999964 23566666666666666543
No 20
>PRK10132 hypothetical protein; Provisional
Probab=80.21 E-value=10 Score=32.59 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGG 444 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~ 444 (492)
+.|..|+..|-.++.++-.........+......++...+..+..++...++....+.+....+-.|-.++|
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 445555555555554443222222222336677888889999998888887776677888888888988876
No 21
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=79.99 E-value=0.65 Score=47.40 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=0.0
Q ss_pred ccccccCC
Q 037051 130 MVWNEIND 137 (492)
Q Consensus 130 TiW~~l~~ 137 (492)
-++++|+.
T Consensus 264 AlFaeLN~ 271 (312)
T PF01213_consen 264 ALFAELNQ 271 (312)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 34555543
No 22
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=78.57 E-value=13 Score=31.46 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCC
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLV-RNDQNRTMELVKRTTKYYQAGG 444 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L-~~~~~~~~~~~~~~~~yFgEd~ 444 (492)
+++.++++.|...+.++-+.-.....++.+....+...-+.++..++... ...+.+.+.....+=.|-+++|
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 66777777776666554332222223344677888888899999998888 5567778888888899999987
No 23
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=77.68 E-value=2.8 Score=44.01 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=4.4
Q ss_pred hHhHHHHH
Q 037051 233 DANTFLFH 240 (492)
Q Consensus 233 ~aE~Fl~~ 240 (492)
-+|||...
T Consensus 459 vPEQfkt~ 466 (480)
T KOG2675|consen 459 VPEQFKTK 466 (480)
T ss_pred ChHHHhhh
Confidence 35666543
No 24
>PRK15313 autotransport protein MisL; Provisional
Probab=77.54 E-value=3.6 Score=47.44 Aligned_cols=6 Identities=17% Similarity=0.557 Sum_probs=2.6
Q ss_pred cccccc
Q 037051 130 MVWNEI 135 (492)
Q Consensus 130 TiW~~l 135 (492)
.+|..+
T Consensus 678 s~WlR~ 683 (955)
T PRK15313 678 SLWMRN 683 (955)
T ss_pred ceEEEe
Confidence 345443
No 25
>PRK10404 hypothetical protein; Provisional
Probab=75.02 E-value=18 Score=30.62 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCC
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQN-RTMELVKRTTKYYQAGG 444 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~-~~~~~~~~~~~yFgEd~ 444 (492)
+.|..|++.|..++.++-.........+.+....++...++.+..++....+... +.......+-.|-.++|
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566777777776666544333222223366778888888888888877766543 36777777888888765
No 26
>PRK15313 autotransport protein MisL; Provisional
Probab=73.99 E-value=4.8 Score=46.47 Aligned_cols=11 Identities=0% Similarity=-0.161 Sum_probs=4.1
Q ss_pred cccchhhhccc
Q 037051 313 RFNLSALRKLS 323 (492)
Q Consensus 313 GFkL~sL~KL~ 323 (492)
||-+|+..+..
T Consensus 771 G~YVDswlQyn 781 (955)
T PRK15313 771 GAYVDTWMLYN 781 (955)
T ss_pred cEEEeeeeeee
Confidence 33333333333
No 27
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=73.77 E-value=10 Score=44.03 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQ-AGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFg-Ed~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
..|...+...-..|.-.++.+.+...++...+..+..+|+ ....+. ...-+.|...+.+|+...+.-...+.
T Consensus 666 ~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~f~~~~~~fl~~ae~ev~~l~ 738 (833)
T KOG1922|consen 666 LKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNES-LPPGDPFSKVKKEFLSSAEKEVKLLI 738 (833)
T ss_pred hcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCccchhhhhhhhhhhhHHHHHHHHH
Confidence 4556666666667777777777777777777777777775 211110 12346677777777777776666663
No 28
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=72.34 E-value=47 Score=37.18 Aligned_cols=54 Identities=6% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHH
Q 037051 417 EELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISR 475 (492)
Q Consensus 417 ~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r 475 (492)
.++-.++..+..+...|..++++|||.. ...+++=-.+.+.-.+|+.-..++-+
T Consensus 904 ~~~p~~~~~ledL~qRy~a~LqmyGEk~-----Ee~EELrlDl~dlK~mYk~QIdeLl~ 957 (961)
T KOG4673|consen 904 DRVPGIKAELEDLRQRYAAALQMYGEKD-----EELEELRLDLVDLKEMYKEQIDELLN 957 (961)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4555677788888888999999999965 34677777788888888876666543
No 29
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=70.24 E-value=18 Score=37.81 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=4.0
Q ss_pred HhHHHHHH
Q 037051 234 ANTFLFHI 241 (492)
Q Consensus 234 aE~Fl~~l 241 (492)
.++||.+|
T Consensus 476 Y~~FMkEM 483 (487)
T KOG4672|consen 476 YNAFMKEM 483 (487)
T ss_pred HHHHHHHH
Confidence 35555554
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.31 E-value=2.4e+02 Score=33.93 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhhcC----CCH---HHHHHHHHhCC-CCCHHHHHHHHh
Q 037051 186 PRKCQNTAIVLRSLA----ISQ---KEIIEALLDGQ-GLSIDILEKLAK 226 (492)
Q Consensus 186 ~kRaqNi~I~L~~lk----~s~---~ei~~aild~~-~L~~e~l~~L~~ 226 (492)
-+..+|+.+-++-|- -++ +++.+.+|+.+ .++.|+|+.|-.
T Consensus 1470 ~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~ 1518 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTG 1518 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 457788888888773 344 45566677643 678888877643
No 31
>PHA03211 serine/threonine kinase US3; Provisional
Probab=68.08 E-value=8 Score=41.70 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHc
Q 037051 272 LQALEMGYNELRT 284 (492)
Q Consensus 272 l~~l~~A~~~l~~ 284 (492)
+..+..|+..|.+
T Consensus 266 ~~qi~~aL~yLH~ 278 (461)
T PHA03211 266 ARQLLSAIDYIHG 278 (461)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555543
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.00 E-value=74 Score=37.88 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhcccccCCC
Q 037051 287 IFLKLLEAILKAGNKMNAGT 306 (492)
Q Consensus 287 ~l~~lL~~iL~iGN~LN~g~ 306 (492)
.-+.+=.+|-+|+|||+..+
T Consensus 1469 s~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34456668889999999864
No 33
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=65.99 E-value=13 Score=37.97 Aligned_cols=9 Identities=11% Similarity=0.597 Sum_probs=4.1
Q ss_pred ChHHHHHhh
Q 037051 143 DDEQIENLF 151 (492)
Q Consensus 143 D~~~lE~lF 151 (492)
.+.+||++.
T Consensus 358 SeAEFEdiM 366 (498)
T KOG4849|consen 358 SEAEFEDIM 366 (498)
T ss_pred hHHHHHHHH
Confidence 344455444
No 34
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=65.06 E-value=82 Score=26.47 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSE--KGGFLKEMKGLLEECKEELKLVRNDQNRTMEL 432 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e--~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~ 432 (492)
++|..+|..+...+..++.....+.... .......|..-...+......+...++.+...
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666655544433211 12344555555555555555555555554443
No 35
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=64.62 E-value=14 Score=37.78 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 037051 203 QKEIIEALL 211 (492)
Q Consensus 203 ~~ei~~ail 211 (492)
-..|.+||-
T Consensus 374 SSAIsrAvs 382 (498)
T KOG4849|consen 374 SSAISRAVS 382 (498)
T ss_pred HHHHHHHhc
Confidence 334444444
No 36
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=62.99 E-value=12 Score=40.11 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEELKL-VRNDQNRT 429 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~-L~~~~~~~ 429 (492)
..|...+.+|.-+..+.-+. |++.++.+
T Consensus 630 N~fc~~~~EFaLEYRTTRervLQQ~qk~A 658 (817)
T KOG1925|consen 630 NQFCHTLREFALEYRTTRERVLQQQQKQA 658 (817)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56888888887776654433 44444433
No 37
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=62.62 E-value=25 Score=36.37 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.7
Q ss_pred CCCccc
Q 037051 308 RGNAQR 313 (492)
Q Consensus 308 rg~A~G 313 (492)
+|+.+|
T Consensus 377 NGGVfG 382 (457)
T KOG0559|consen 377 NGGVFG 382 (457)
T ss_pred CCcEee
Confidence 344444
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.49 E-value=67 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=52.3
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 367 AVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 367 As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
|.+-+++.+...+....+++..++..++..++.. =...+.--+.+.+.+++.+...++.+.....-+++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~---dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRD---DVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888889999999999999998886532 14567777888888888888887777666555544
No 39
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.58 E-value=1.3e+02 Score=30.22 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=20.8
Q ss_pred ccccchhhhccccccCC--------CCCchHHHHHHHHHH
Q 037051 312 QRFNLSALRKLSDVKST--------NGKTTLLYFVVEQRD 343 (492)
Q Consensus 312 ~GFkL~sL~KL~d~Ks~--------d~k~tLLh~lv~~ve 343 (492)
.+++++.=.|+.|+|.. +.+.+|.+.|-+.++
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~ 145 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVE 145 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHh
Confidence 56666666778888873 344577777766543
No 40
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=56.66 E-value=26 Score=37.09 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=4.0
Q ss_pred ccCCCcccch
Q 037051 17 VFNPSFEEDE 26 (492)
Q Consensus 17 ~~~~~~~~~~ 26 (492)
+|+=-|+--+
T Consensus 75 vyGLnFqs~~ 84 (409)
T KOG4590|consen 75 VYGLTFQSEQ 84 (409)
T ss_pred hhcccccChh
Confidence 3444444433
No 41
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=56.55 E-value=1.2e+02 Score=26.95 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASS--EKGGFLKEMKGLLEECKEELKLVRNDQNRTMELV 433 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~--e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~ 433 (492)
+.|..+|..+...+..++.....+... ........|......+......+...++.+....
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544433211 1245666777777777777666666666655443
No 42
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=55.41 E-value=52 Score=27.12 Aligned_cols=71 Identities=8% Similarity=0.154 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCC
Q 037051 374 TFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRN-DQNRTMELVKRTTKYYQAGG 444 (492)
Q Consensus 374 ~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~-~~~~~~~~~~~~~~yFgEd~ 444 (492)
++.+++..|..++..+............+.....+...++++..++..... ...++.+....+-.|-.+.|
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 345566666666665554443322222244556666666666666655443 22334444555555655544
No 43
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.48 E-value=33 Score=35.21 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=23.4
Q ss_pred hhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHc
Q 037051 243 KVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRT 284 (492)
Q Consensus 243 ~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~ 284 (492)
..+.|.++-|..-. .......+.|+..+..+...|+.|..
T Consensus 235 ~slkRt~EeL~~G~--~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 235 ESLKRTEEELNIGK--QKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHhhHHHHHhhH--HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445444333222 23445567777788888888887753
No 44
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=53.53 E-value=68 Score=29.43 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSEKGGFL--KEMKGLLEECKEELKLVRNDQNRTMELVKRTTKY 439 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~--~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~y 439 (492)
.....+..+|++++.++++++...+.. |.|. .++..-++..+.+++.+.+.....+..++....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~q--DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQ--DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888999999888776533 4555 4566777777777777777777666666665544
No 45
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.03 E-value=1.5e+02 Score=33.53 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRT 436 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~ 436 (492)
+++...+..|-+....+++.++.....+.+.|..+
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777788888888888888888888888888766
No 46
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.58 E-value=2.2e+02 Score=28.97 Aligned_cols=27 Identities=0% Similarity=0.081 Sum_probs=18.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhh
Q 037051 453 LQLFVIVKEFLDMVDTVCADISRNLQK 479 (492)
Q Consensus 453 ~efF~~l~~F~~~f~~a~~e~~r~~~k 479 (492)
..+|..+.++...+.++..++.....|
T Consensus 123 ~n~~~~~~~~t~~la~~t~~L~~~~~~ 149 (301)
T PF06120_consen 123 INHLMSQADATRKLAEATRELAVAQER 149 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555778888888888887654433
No 47
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.76 E-value=1.5e+02 Score=25.93 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
..+-..+.+-.+++.+|+....++++.|+.-..
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888899999999999988876543
No 48
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=47.48 E-value=50 Score=32.87 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=4.7
Q ss_pred HHHHHHHhhc
Q 037051 190 QNTAIVLRSL 199 (492)
Q Consensus 190 qNi~I~L~~l 199 (492)
+.-.|+|.+|
T Consensus 160 ndt~v~lgrl 169 (297)
T PF07174_consen 160 NDTSVVLGRL 169 (297)
T ss_pred CCceEEeccc
Confidence 3344455554
No 49
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.38 E-value=40 Score=34.63 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037051 262 KSEILQLKESLQALEMGYNE 281 (492)
Q Consensus 262 ~~~~~~l~~~l~~l~~A~~~ 281 (492)
+.++..+..+++.|..-.++
T Consensus 259 Eqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 259 EQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 33444444444444444433
No 50
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=45.29 E-value=3e+02 Score=26.72 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037051 406 KEMKGLLEECKEELKL----VRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQKKN 481 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~----L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~~~kk~ 481 (492)
..|..++.+-..++.. ......+-.....++.++||..-+. ....|=.+|.+.-..-++..++.++.....+
T Consensus 131 ~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDp----rdprF~eml~~kEkeeKKk~K~aKkk~k~ek 206 (217)
T PF10147_consen 131 AKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDP----RDPRFQEMLQEKEKEEKKKKKEAKKKEKEEK 206 (217)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444 3344444556678889999997643 3456777777777777777777665444333
No 51
>PRK11637 AmiB activator; Provisional
Probab=43.92 E-value=3.7e+02 Score=28.57 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 408 MKGLLEECKEELKLVRNDQNRTMELVKRTTKY 439 (492)
Q Consensus 408 m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~y 439 (492)
+..=+...+.+|..+++.+....+.+...+.+
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555444433
No 52
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=43.84 E-value=37 Score=33.85 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.6
Q ss_pred CCcccc
Q 037051 128 HSMVWN 133 (492)
Q Consensus 128 ~~TiW~ 133 (492)
.|+||.
T Consensus 205 aGtf~r 210 (274)
T PLN02983 205 AGTFYR 210 (274)
T ss_pred CeEEEe
Confidence 344444
No 53
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=43.66 E-value=60 Score=36.49 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCC
Q 037051 49 SDLTGSERKAEP 60 (492)
Q Consensus 49 ~~~~~~~~~~~~ 60 (492)
.+..++...+.+
T Consensus 177 k~~~gg~a~p~~ 188 (944)
T KOG4307|consen 177 KDPFGGDAGPYK 188 (944)
T ss_pred cccCCCCCCCCc
Confidence 344444333333
No 54
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.54 E-value=1.3e+02 Score=32.19 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQ 441 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFg 441 (492)
+....+++.--+.-++.+...+....++.+..++++-|+-
T Consensus 413 ~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 413 DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 5667777777777777777888888888888888877664
No 55
>PHA03246 large tegument protein UL36; Provisional
Probab=42.99 E-value=9.3e+02 Score=31.82 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCccccc-chhhhccccc-----cCCCCCchHHHH
Q 037051 264 EILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFN-LSALRKLSDV-----KSTNGKTTLLYF 337 (492)
Q Consensus 264 ~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFk-L~sL~KL~d~-----Ks~d~k~tLLh~ 337 (492)
.+.+.+..+..+..++++-.+ +-..+|+-|+..-+-.- |..+.||. |-.|.||.-. |+-|+-.|.=+.
T Consensus 1649 Dl~~ak~al~~a~~a~~eAt~--Ra~~iLrevvea~~a~d----r~~ae~LANLKnLLRLtp~P~~iA~AIDkA~Sa~DI 1722 (3095)
T PHA03246 1649 DNDAIKSITQRVTTAIEAAKS--RGESILKDLAEASYAAD----RETAEQLANLKNLLRLVAMPAHIAKAIDKAETANDI 1722 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhcccCCCHHHHHHhhhcccHHHH
Confidence 344555556666666666543 33466666666444322 22344443 4555555332 222332222222
Q ss_pred HHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhc-----c--CCCCchHHHHHH
Q 037051 338 VVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCA-----S--SEKGGFLKEMKG 410 (492)
Q Consensus 338 lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~-----~--~e~d~f~~~m~~ 410 (492)
+ .++ .-=|..++++..+|.+.+.= +...+..++... + +.-..|.+++..
T Consensus 1723 V-TQa---------------ALLL~~vEet~ELDvqAVeW--------L~hAr~IIDSHpLT~rIDg~GPm~~yaeRIDa 1778 (3095)
T PHA03246 1723 V-TQA---------------ALLLTKVEETKELDTQTVEW--------LKHAESVIDSHDLTVRIDESGPMTIYAERIDA 1778 (3095)
T ss_pred H-HHH---------------HHHHHHhhhccccCHHHHHH--------HHHHHHHhccCccccccCCCCCcHHHHHHHHH
Confidence 2 221 11144566666666665431 333344444432 1 122677777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhch
Q 037051 411 LLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQL 455 (492)
Q Consensus 411 Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~ef 455 (492)
.+ ..+.+++.|+..+..++..|.+++..|+-+.... ..+++.|
T Consensus 1779 L~-~LR~rLd~Lr~~L~~AEaaWDeaW~~F~r~~~~~-d~S~eg~ 1821 (3095)
T PHA03246 1779 LV-RLENRLAELKSELALAEVAWDDTWSTFIHDKDRI-DKSSEGF 1821 (3095)
T ss_pred HH-HHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCc-ccCHHHH
Confidence 55 4568999999999999999999999999875543 2445443
No 56
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.30 E-value=1.5e+02 Score=22.79 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-CCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 375 FINTYSALASRVVEIWELVTHCASS-EKGGFLKEMK-GLLEECKEELKLVRNDQNRTMELVKR 435 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~~~-e~d~f~~~m~-~Fl~~a~~~l~~L~~~~~~~~~~~~~ 435 (492)
+..++..|.+.+..++..+.....- .+..|....- .-++.-..++..+...+..+.+....
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777776666554310 1133433322 23444455555555555555554443
No 57
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=41.43 E-value=1.6e+02 Score=22.55 Aligned_cols=25 Identities=4% Similarity=0.058 Sum_probs=14.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Q 037051 401 KGGFLKEMKGLLEECKEELKLVRND 425 (492)
Q Consensus 401 ~d~f~~~m~~Fl~~a~~~l~~L~~~ 425 (492)
.+.|...+..|......-...|.+.
T Consensus 46 ~~af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 46 ADAFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777666655554444443
No 58
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=40.92 E-value=70 Score=34.93 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=4.1
Q ss_pred HHHHHhhc
Q 037051 145 EQIENLFG 152 (492)
Q Consensus 145 ~~lE~lF~ 152 (492)
.-||..|-
T Consensus 292 ~AIeGVfP 299 (582)
T PF03276_consen 292 PAIEGVFP 299 (582)
T ss_pred hhhccccc
Confidence 34555554
No 59
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=40.56 E-value=2.4e+02 Score=28.40 Aligned_cols=55 Identities=16% Similarity=0.392 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhhhcccccccccccccccHHHHhcc-CHHHHHHHHHHHHHHHHHHHH
Q 037051 333 TLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRI-ELDTFINTYSALASRVVEIWE 391 (492)
Q Consensus 333 tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v-~~~~l~~~i~~L~~~l~~i~~ 391 (492)
.+|+.|...+-+.+ .+.+..+.+++..++..-.. .-.....++..+++.+..++.
T Consensus 134 ~ll~~il~~ivd~~----~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~ 189 (318)
T TIGR00383 134 YLLYDIFDAIIDSY----FPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRR 189 (318)
T ss_pred HHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555555543332 23344444555555443211 112333445555555554443
No 60
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.67 E-value=2e+02 Score=23.24 Aligned_cols=31 Identities=3% Similarity=0.047 Sum_probs=26.6
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037051 368 VRIELDTFINTYSALASRVVEIWELVTHCAS 398 (492)
Q Consensus 368 s~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~ 398 (492)
...+..++...+..|+..+..++..+.....
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5678888999999999999999999987653
No 61
>PRK09546 zntB zinc transporter; Reviewed
Probab=38.24 E-value=2.4e+02 Score=28.62 Aligned_cols=11 Identities=18% Similarity=0.012 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 037051 333 TLLYFVVEQRD 343 (492)
Q Consensus 333 tLLh~lv~~ve 343 (492)
.+|+.|+..+-
T Consensus 142 ~ll~~lld~iv 152 (324)
T PRK09546 142 GWLVDVCDALT 152 (324)
T ss_pred HHHHHHHHHHH
Confidence 35555555443
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.19 E-value=1.7e+02 Score=34.51 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcchhHHHHHHHHHHhcccccCCC
Q 037051 273 QALEMGYNELRTRVIFLKLLEAILKAGNKMNAGT 306 (492)
Q Consensus 273 ~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~ 306 (492)
..+..|++.+.-+..+...+++| +||++=..+
T Consensus 599 ~~v~~al~Li~yd~~l~~amefv--FG~tlVc~~ 630 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFV--FGSTLVCDS 630 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHH--hCceEEecC
Confidence 45677888888899998888876 688887765
No 63
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.91 E-value=3.9e+02 Score=25.92 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=34.3
Q ss_pred HhHHHHHHHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCC
Q 037051 234 ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAG 305 (492)
Q Consensus 234 aE~Fl~~ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g 305 (492)
+|-++..++ .+|- ..|..-++|+..+..-........-.+.-+|-.+.-=...+++-...=..|+-.|..
T Consensus 11 ~Eial~~iL-~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 11 AEIALFLIL-LLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred HHHHHHHHH-HcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 455555554 4666 667777777665554443222222222333333333344445544444446655543
No 64
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=37.18 E-value=2.6e+02 Score=27.25 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhhhhhcccccccccccccccHHHHh--------ccCHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCC
Q 037051 332 TTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAV--------RIELDTFINTYSALASRVVEIWELVTH-CASSEKG 402 (492)
Q Consensus 332 ~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As--------~v~~~~l~~~i~~L~~~l~~i~~~l~~-~~~~e~d 402 (492)
..+++.+...+-+.+ .+.+..+.+++..++... -.++-.+...+..+.+.+...+..+.. .......
T Consensus 109 ~~ll~~il~~~~~~~----~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~ 184 (292)
T PF01544_consen 109 EDLLYAILDEIVDDY----FEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSP 184 (292)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCST
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhh
Confidence 355555555543332 123333344444444332 123445555666666666665555522 2211112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 403 GFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 403 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
.+.......+++...++..+.+....+.+....+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 220 (292)
T PF01544_consen 185 FISDEDKEYLRDLLDRIERLLERAESLRERLESLQD 220 (292)
T ss_dssp TSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233334444444444444444444444444433
No 65
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.99 E-value=3.5e+02 Score=25.21 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---CCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCh
Q 037051 377 NTYSALASRVVEIWELVTHCASSE---KGGFLKEMKGLLEECK-EELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHP 452 (492)
Q Consensus 377 ~~i~~L~~~l~~i~~~l~~~~~~e---~d~f~~~m~~Fl~~a~-~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p 452 (492)
..+..+...+..+++.+....+.+ .+.-...++.|+.++. .-+..+......+.+.++.+..|..+-.+.....-.
T Consensus 17 ~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~ 96 (204)
T PF04740_consen 17 SSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSSSNAIID 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccccccc
Confidence 344444444555555444443322 1445566777777643 334555555555555554444444332211001123
Q ss_pred hchHH-HHHHHHHHHHHHHHHHHH
Q 037051 453 LQLFV-IVKEFLDMVDTVCADISR 475 (492)
Q Consensus 453 ~efF~-~l~~F~~~f~~a~~e~~r 475 (492)
++|+. -+..-+..+.+...++..
T Consensus 97 e~~L~~el~~~l~~~~~~~~~~~~ 120 (204)
T PF04740_consen 97 EDFLESELKKKLNQLKEQIEDLQD 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 444444444444444433
No 66
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.81 E-value=1.9e+02 Score=27.54 Aligned_cols=106 Identities=7% Similarity=0.105 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccC
Q 037051 369 RIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKE------ELKLVRNDQNRTMELVKRTTKYYQA 442 (492)
Q Consensus 369 ~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~------~l~~L~~~~~~~~~~~~~~~~yFgE 442 (492)
|..++++.+++.+|+..+.++-+.+..+.++ +..+......|+..-.. .=..+.+-+.+..+.+.+++.|...
T Consensus 1 r~~~~~~E~~~~~le~~l~kl~K~~~~~~d~-g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 1 RATIDEVETDVVEIEAKLDKLVKLCSGMIEA-GKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 037051 443 GGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQK 479 (492)
Q Consensus 443 d~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~~~k 479 (492)
--.... ..+..-|..|++.==+..+|.+++-.|
T Consensus 80 l~~q~e----~~l~~pL~~F~k~dL~~~KE~rK~Fdk 112 (200)
T cd07637 80 LFDQAQ----RSVRQQLHSFVKEDVRKFKETKKQFDK 112 (200)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
No 67
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.44 E-value=90 Score=35.15 Aligned_cols=7 Identities=14% Similarity=0.719 Sum_probs=3.4
Q ss_pred HHHHhhc
Q 037051 146 QIENLFG 152 (492)
Q Consensus 146 ~lE~lF~ 152 (492)
.|.+.|.
T Consensus 603 ~~a~~f~ 609 (620)
T PRK14948 603 NLADFFN 609 (620)
T ss_pred HHHHHcC
Confidence 4455553
No 68
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=36.09 E-value=83 Score=34.38 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=32.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----C------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 370 IELDTFINTYSALASRVVEIWELVTHCASSE-----K------GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRT 436 (492)
Q Consensus 370 v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e-----~------d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~ 436 (492)
-.++.+...|.+++.++.. ++...+.++. . -.=.++.-+|+...+.....|-.......+.++..
T Consensus 487 ~~L~aVn~~Ik~ie~~~~~--e~~kK~~~~~~~~~~~~q~~~~k~E~~KYLPFLnsiqk~YesLv~kv~~yt~nLk~~ 562 (574)
T PF07462_consen 487 KHLDAVNEQIKEIEDEIND--EEEKKIPSEPPKTAPKNQLNAKKEELEKYLPFLNSIQKEYESLVNKVNTYTENLKKF 562 (574)
T ss_pred HHHHHHHHHHHHHhccccH--HHHhhccCCcccccchhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777776666555 1222211110 0 01123555677776666666655544444444443
No 69
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=35.38 E-value=66 Score=32.74 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcch
Q 037051 261 YKSEILQLKESLQALEMGYNELRTRV 286 (492)
Q Consensus 261 f~~~~~~l~~~l~~l~~A~~~l~~S~ 286 (492)
|+..+-.--..|+.++.-.+++|.|-
T Consensus 284 FerQVI~EL~~LQqIEr~AkeMRasA 309 (407)
T PF04625_consen 284 FERQVIAELKMLQQIERMAKEMRASA 309 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45554333346667777777777654
No 70
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=35.20 E-value=3.5e+02 Score=26.61 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037051 413 EECKEELKLVRNDQNRTMELVKRTTKYYQA 442 (492)
Q Consensus 413 ~~a~~~l~~L~~~~~~~~~~~~~~~~yFgE 442 (492)
...+.+++..+..+..+.+.+...+.-|-+
T Consensus 161 ~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~ 190 (244)
T cd07595 161 DALKDEYEEAELKLEQCRDALATDMYEFLA 190 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555555444444
No 71
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=35.15 E-value=3.1e+02 Score=26.36 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037051 455 LFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 455 fF~~l~~F~~~f~~a~~e~~ 474 (492)
+-.-+.+|+..|....+-|+
T Consensus 92 Vl~Pl~~~~s~f~~i~k~I~ 111 (211)
T cd07588 92 VLGPLTAYQSQFPEVKKRIA 111 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566655555554443
No 72
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=34.04 E-value=3e+02 Score=25.13 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 372 LDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNR 428 (492)
Q Consensus 372 ~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~ 428 (492)
+.++...+..|+..++.+...++..++ .|...+....+.....++.|.++...
T Consensus 74 ~~~~~eelerLe~~iKdl~~lye~Vs~----d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 74 LQDIKEELERLEENIKDLVSLYELVSR----DFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766553 23333333333333334444443333
No 73
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=33.62 E-value=1.5e+02 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=18.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 037051 452 PLQLFVIVKEFLDMVDTVCADISRNLQK 479 (492)
Q Consensus 452 p~efF~~l~~F~~~f~~a~~e~~r~~~k 479 (492)
..++...+.+....|.+...++-++=|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~i~~iI~eG~~ 82 (133)
T PF08359_consen 55 NEELRKKINEIRREYLRIIEEIIEEGQE 82 (133)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777555443
No 74
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.11 E-value=4e+02 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 408 MKGLLEECKEELKLVRNDQNRTMELVKRTT 437 (492)
Q Consensus 408 m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~ 437 (492)
...+......+++.++..+..+.+.+.++.
T Consensus 121 ~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 121 LRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777777777777777777777766665
No 75
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.83 E-value=4.5e+02 Score=25.14 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 371 ELDTFINTYSALASRVVEIWELVTH 395 (492)
Q Consensus 371 ~~~~l~~~i~~L~~~l~~i~~~l~~ 395 (492)
.++++..++.+|+..+.++.+.+..
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~ 27 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSG 27 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666555443
No 76
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=32.79 E-value=1.5e+02 Score=33.85 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=4.6
Q ss_pred ccccCCCccc
Q 037051 15 KIVFNPSFEE 24 (492)
Q Consensus 15 ~~~~~~~~~~ 24 (492)
-+-+-|+|+-
T Consensus 634 i~~~~P~~~~ 643 (759)
T PF05518_consen 634 ISTVPPSFGT 643 (759)
T ss_pred cccCCCcccc
Confidence 3444455544
No 77
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=32.37 E-value=4.8e+02 Score=25.33 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=47.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC------CCCCCCChhchHHHHHHHHHHHHHHHHH
Q 037051 400 EKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGG------SKEKWGHPLQLFVIVKEFLDMVDTVCAD 472 (492)
Q Consensus 400 e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~------~~~~~~~p~efF~~l~~F~~~f~~a~~e 472 (492)
+.|.|.+....|+......|+.+......+...-++++.-||.-. +....+....+|..+.++...+++....
T Consensus 20 e~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~~r 98 (218)
T cd07663 20 EVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVEDR 98 (218)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999998888888888877777777666666555510 1111123456666666666665554443
No 78
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.77 E-value=2e+02 Score=27.38 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=35.5
Q ss_pred ccccC-CCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Q 037051 323 SDVKS-TNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWEL 392 (492)
Q Consensus 323 ~d~Ks-~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~ 392 (492)
.+.++ .+.+..++.||.++.+-+.++..|.. ..++..++.|-.+ ++.|..+....+.-..+++..
T Consensus 47 ~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~----~~~~TPLESAl~v-~~~I~~E~~~~~~lhe~i~~l 112 (200)
T cd00280 47 LKLTATQLKTLRIMQFLSRIAEGKNLDCQFEN----DEELTPLESALMV-LESIEKEFSLPETLHEEIRKL 112 (200)
T ss_pred ccccccchhHhHHHHHHHHHHcCCCCCCccCC----CCCcChHHHHHHH-HHHHHHhcCCcHHHHHHHHHH
Confidence 33444 34556899999998776554333322 3457778877544 455555554433333333333
No 79
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=31.63 E-value=2.9e+02 Score=22.60 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 377 NTYSALASRVVEIWELVTHCAS-SEKGGFLKEMKGLLEECKEELKLVRNDQNR 428 (492)
Q Consensus 377 ~~i~~L~~~l~~i~~~l~~~~~-~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~ 428 (492)
..|..+...+..+++.+..... .+...+...|..-...+...++.+.+.+..
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~ 55 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKK 55 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666655542 233556666665555555554444444333
No 80
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=31.54 E-value=66 Score=32.72 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=5.7
Q ss_pred Ccccccchh
Q 037051 310 NAQRFNLSA 318 (492)
Q Consensus 310 ~A~GFkL~s 318 (492)
+..-|+|+.
T Consensus 314 ~~s~ykl~Y 322 (407)
T PF04625_consen 314 GTSPYKLRY 322 (407)
T ss_pred CCCCeeecc
Confidence 356677766
No 81
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=31.31 E-value=43 Score=37.64 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQA 442 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgE 442 (492)
..|..|+..+..+|..+++..--..+.-.....||.+
T Consensus 282 ~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d 318 (619)
T PF03999_consen 282 QNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYID 318 (619)
T ss_dssp -------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Confidence 4566677777777777666554333333344445543
No 82
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=31.16 E-value=3.4e+02 Score=23.82 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=36.4
Q ss_pred ccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 358 SNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTT 437 (492)
Q Consensus 358 ~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~ 437 (492)
......+..+.. .++.|...+..|...+.+++.++.. =++.+......|+..+. +.+....+.
T Consensus 61 L~q~~~~~~~~~-~l~~v~~~v~~L~~s~~RL~~eV~~---------------Py~~~~~~~~~L~rl~~-t~~LLR~~~ 123 (132)
T PF10392_consen 61 LSQASSIEELES-VLQAVRSSVESLQSSYERLRSEVIE---------------PYEKIQKLTSQLERLHQ-TSDLLRSVS 123 (132)
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344455555555 5677777777777777777665432 13444444444444332 445555555
Q ss_pred Hhc
Q 037051 438 KYY 440 (492)
Q Consensus 438 ~yF 440 (492)
.|+
T Consensus 124 r~l 126 (132)
T PF10392_consen 124 RFL 126 (132)
T ss_pred HHH
Confidence 554
No 83
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=30.82 E-value=1.2e+02 Score=29.00 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=13.0
Q ss_pred ccccccccCCccccCCCccc
Q 037051 5 EHGELKATFPKIVFNPSFEE 24 (492)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (492)
.++++..-|=+-||+--.+.
T Consensus 82 ~~~~~~~YyKkhIy~~d~~v 101 (205)
T PF12238_consen 82 GREKMTKYYKKHIYKEDSEV 101 (205)
T ss_pred cHHHHHHHHHHhccCccccc
Confidence 34556666777788766665
No 84
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.71 E-value=2.7e+02 Score=22.53 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 403 GFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 403 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
++...+.+-++.....+.++...+..+.....++...|.+-... ..+.+.|.... ....+.+..+++
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~---~~~~~~~~~~~-y~~KL~~ikkrm 73 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV---EQINEPFDLDP-YVKKLVNIKKRM 73 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhHHHhhH-HHHHHHHHHHHH
Confidence 46777888888999999999998888888888888877654321 12344455555 666666665555
No 85
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=30.15 E-value=74 Score=33.41 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.1
Q ss_pred Ccccchh
Q 037051 21 SFEEDEE 27 (492)
Q Consensus 21 ~~~~~~~ 27 (492)
-+|+|+|
T Consensus 446 ~~~l~~d 452 (563)
T KOG1785|consen 446 LLELDDD 452 (563)
T ss_pred ccccCCC
Confidence 3444443
No 86
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=30.07 E-value=2.2e+02 Score=25.40 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=43.4
Q ss_pred ccccccHHHHhcc-CHH--HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH------HHHHHHHHHHHHHHHHH
Q 037051 358 SNEFNNVNKAVRI-ELD--TFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGL------LEECKEELKLVRNDQNR 428 (492)
Q Consensus 358 ~~eL~~v~~As~v-~~~--~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~F------l~~a~~~l~~L~~~~~~ 428 (492)
.+++..|.-|-.. |-. +......++++....+...++...+...+.|...+..| +.++..++..+++.+..
T Consensus 18 ~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ 97 (142)
T PF04048_consen 18 TDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQE 97 (142)
T ss_pred cCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777766431 211 24456666666666777767666544445666666555 44566666666655555
Q ss_pred HHHHH
Q 037051 429 TMELV 433 (492)
Q Consensus 429 ~~~~~ 433 (492)
++..+
T Consensus 98 ak~~L 102 (142)
T PF04048_consen 98 AKSLL 102 (142)
T ss_pred HHHHH
Confidence 54443
No 87
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=30.05 E-value=1.6e+02 Score=25.06 Aligned_cols=16 Identities=19% Similarity=0.057 Sum_probs=6.4
Q ss_pred hhchHH-HHHHHHHHHH
Q 037051 452 PLQLFV-IVKEFLDMVD 467 (492)
Q Consensus 452 p~efF~-~l~~F~~~f~ 467 (492)
..++.| .+.+|++.|-
T Consensus 67 V~eviGeD~~~Fcdeli 83 (103)
T PF06304_consen 67 VREVIGEDVAAFCDELI 83 (103)
T ss_dssp HHHHH-S-HHHHHHHHH
T ss_pred hhHhhCCCHHHHHHHHH
Confidence 344444 3445555443
No 88
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=29.92 E-value=1.5e+02 Score=35.16 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=7.3
Q ss_pred cccccchhhhccccccC
Q 037051 311 AQRFNLSALRKLSDVKS 327 (492)
Q Consensus 311 A~GFkL~sL~KL~d~Ks 327 (492)
.+|..|=.|.+=--|-+
T Consensus 423 ~hGLTlWDLdR~f~~gg 439 (1228)
T PRK12270 423 THGLTLWDLDREFPVGG 439 (1228)
T ss_pred ccCCCHHhcCceeecCC
Confidence 34554444444333333
No 89
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=28.06 E-value=5.4e+02 Score=24.57 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHH
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCAD 472 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e 472 (492)
..+..-+.......+.+-..|..+...-+.+-.++.... .+.+++-.-+...-..|++..+.
T Consensus 118 ~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d-----~~~~~l~~ki~~iN~~y~~~~~~ 179 (204)
T PF10368_consen 118 KELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKD-----TTQKQLDEKIKAINQSYKEVNKQ 179 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666677778888888888888888765 34566665555555555544444
No 90
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=27.79 E-value=20 Score=37.36 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q 037051 406 KEMKGLLE 413 (492)
Q Consensus 406 ~~m~~Fl~ 413 (492)
.+|.-++.
T Consensus 300 pkmrhyvh 307 (386)
T PF01698_consen 300 PKMRHYVH 307 (386)
T ss_dssp HHHHHCHH
T ss_pred hhhhhhee
Confidence 45555544
No 91
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=27.67 E-value=2.2e+02 Score=34.37 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=12.0
Q ss_pred ccCCccccCCCcccchhh
Q 037051 11 ATFPKIVFNPSFEEDEEK 28 (492)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (492)
++-|+..|||||+--+..
T Consensus 81 s~~pkL~~d~~~~~~~~p 98 (1639)
T KOG0905|consen 81 STSPKLDFDPSYNEPRGP 98 (1639)
T ss_pred cCCCcccccccccCCCCC
Confidence 566777788777655544
No 92
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=27.65 E-value=2e+02 Score=27.83 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037051 372 LDTFINTYSALASRVVEIW 390 (492)
Q Consensus 372 ~~~l~~~i~~L~~~l~~i~ 390 (492)
+..+..+...|.++++..-
T Consensus 21 f~~le~~~~kL~Ke~K~Y~ 39 (211)
T cd07612 21 LNMQQSDGNRLYKDLKAYL 39 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 93
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=27.27 E-value=2.8e+02 Score=21.10 Aligned_cols=61 Identities=3% Similarity=0.071 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
..|..+..........++..+..+......+...+... ..+.|...+..|...+.+..+.+
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~-------a~~af~~~~~~~~~~~~~~~~~L 67 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGE-------AADAFQDKFEEWNQAFRQLNEAL 67 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSS-------TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666666665444322 12444444444444444444433
No 94
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.77 E-value=2.8e+02 Score=20.93 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 372 LDTFINTYSALASRVVEIWELVTH 395 (492)
Q Consensus 372 ~~~l~~~i~~L~~~l~~i~~~l~~ 395 (492)
++.|..+|..|...+..+...+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655554433
No 95
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=26.64 E-value=5.8e+02 Score=24.52 Aligned_cols=71 Identities=11% Similarity=-0.035 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 403 GFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 403 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
.+...|..|+.+--..++..++.+.+..+.|...+.-+..-+++.+....++--..|..=-..|..+.=|.
T Consensus 93 ~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdY 163 (207)
T cd07636 93 VLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEY 163 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777777766654323222344444445555445555544443
No 96
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=26.16 E-value=2.1e+02 Score=34.06 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=20.3
Q ss_pred CChhchHHHHHHHHHHHHHHHHHHH
Q 037051 450 GHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 450 ~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
.+.++.=..+.+|-.++++++.|.+
T Consensus 795 it~ee~e~~l~dy~~~Le~~f~e~r 819 (1228)
T PRK12270 795 ITVEEAEQALRDYQGQLERVFNEVR 819 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888899999999998873
No 97
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=25.84 E-value=3.5e+02 Score=21.65 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 037051 374 TFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQ 426 (492)
Q Consensus 374 ~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~ 426 (492)
-|.+.+.++...++.+-+.++. ++|.|.++-.-++..--.-|.-|++.+
T Consensus 15 WL~~~l~dmd~kvk~mlkliee----dgdSfakrAEmyy~kRp~Li~~vee~y 63 (74)
T PF07765_consen 15 WLQENLSDMDEKVKAMLKLIEE----DGDSFAKRAEMYYKKRPELISLVEEFY 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----CcchHHHhhHHHhcccHHHHHHHHHHH
Confidence 3556677777777666554433 446677666666655444444444433
No 98
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=25.74 E-value=1.1e+02 Score=30.48 Aligned_cols=7 Identities=0% Similarity=0.249 Sum_probs=3.2
Q ss_pred ccccccc
Q 037051 114 LKSLHWD 120 (492)
Q Consensus 114 lk~l~W~ 120 (492)
+...+|.
T Consensus 204 maGtf~r 210 (274)
T PLN02983 204 MAGTFYR 210 (274)
T ss_pred cCeEEEe
Confidence 3444554
No 99
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.70 E-value=3.3e+02 Score=21.28 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 377 NTYSALASRVVEIWELVTHCAS---SEKGGFLKEMKGLLEECKEELKLVRNDQN 427 (492)
Q Consensus 377 ~~i~~L~~~l~~i~~~l~~~~~---~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~ 427 (492)
..|..++..+.++...+..+.. +-.......|..=+..+..++..|+..++
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444443321 11124566666667777777777766554
No 100
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=25.44 E-value=1.2e+02 Score=28.00 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=9.3
Q ss_pred cccchhhhccchh
Q 037051 22 FEEDEEKCMDITT 34 (492)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (492)
.|+|-|+|++|-+
T Consensus 53 lEDDlEFCP~Llt 65 (165)
T PF14618_consen 53 LEDDLEFCPNLLT 65 (165)
T ss_pred cccccccCCCCCc
Confidence 3444499999974
No 101
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.36 E-value=4.9e+02 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=15.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 369 RIELDTFINTYSALASRVVEIWELVTH 395 (492)
Q Consensus 369 ~v~~~~l~~~i~~L~~~l~~i~~~l~~ 395 (492)
.-|...+...+..|+..+...+.++..
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~ 91 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELAS 91 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655543
No 102
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=25.12 E-value=4.4e+02 Score=23.01 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 403 GFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 403 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
.+...+..|++.-+.+++.|+.....++........ ++... ..+|-.-|..++.|...+.+..+-++
T Consensus 15 ~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~y-l~nPlnaF~LIrRl~~dW~~~~~~~~ 81 (134)
T PF08336_consen 15 ELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEY-LSNPLNAFSLIRRLHQDWPKWEKLME 81 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhh-hhcHHHHHHHHHHHHHhhhhHHHHHH
Confidence 466788888888888888888877777766655533 22221 13578888999999888887766554
No 103
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.94 E-value=2.3e+02 Score=30.09 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 037051 375 FINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEE---CKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGH 451 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~---a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~ 451 (492)
+...+..|+.++.+++..+..... .+.++|..+..+ .+.+...++..+....+.-..+|+...|..+.. .++
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk----~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsessl-emd 325 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQK----SYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSL-EMD 325 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHH
Confidence 344555666666666665554432 234566666554 345556666666666677777899998876543 356
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 037051 452 PLQLFVIVKEFLDMVDTVCADISRNLQKKNGT 483 (492)
Q Consensus 452 p~efF~~l~~F~~~f~~a~~e~~r~~~kk~~~ 483 (492)
-+.||.-+.+|-..|.-|..-- --++.+.+
T Consensus 326 eery~Ne~~~~g~s~~Va~~as--as~~~~~s 355 (552)
T KOG2129|consen 326 EERYLNEFVDFGDSVEVALHAS--ASQKYNGS 355 (552)
T ss_pred HHHHHhhhhccCCceeeecccc--hhhhCCCC
Confidence 7788888888877776555432 34555543
No 104
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.89 E-value=3e+02 Score=20.67 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037051 374 TFINTYSALASRVVEIWE 391 (492)
Q Consensus 374 ~l~~~i~~L~~~l~~i~~ 391 (492)
+|.+++..+...+..++.
T Consensus 4 elEn~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 4 ELENELPRIESSINTVKK 21 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 105
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=24.79 E-value=3.3e+02 Score=26.40 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 399 SEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 399 ~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
.+.|.|.+.-..|+...+..|+.+......+...-++++.
T Consensus 20 ~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~ 59 (219)
T cd07621 20 KDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVAD 59 (219)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888888888888887777766555444444
No 106
>PHA00728 hypothetical protein
Probab=24.77 E-value=1.9e+02 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037051 371 ELDTFINTYSALASRVVEIWELVTHC 396 (492)
Q Consensus 371 ~~~~l~~~i~~L~~~l~~i~~~l~~~ 396 (492)
+++++..+-.+|++.+.+++..+.+-
T Consensus 6 eveql~keneelkkkla~leal~nn~ 31 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNNE 31 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 56677777788888888877776553
No 107
>PF15455 Pro-rich_19: Proline-rich 19
Probab=24.63 E-value=2.6e+02 Score=27.95 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=9.0
Q ss_pred ccccccccccccccc
Q 037051 108 VVGHVKLKSLHWDKV 122 (492)
Q Consensus 108 ~~p~~~lk~l~W~ki 122 (492)
+.|..+|..|.|..-
T Consensus 328 PspPaplPsLsw~Va 342 (357)
T PF15455_consen 328 PSPPAPLPSLSWVVA 342 (357)
T ss_pred CCCCCCCCCcceeee
Confidence 345566667777554
No 108
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.40 E-value=1.4e+02 Score=31.35 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=5.0
Q ss_pred cccccCCccc
Q 037051 8 ELKATFPKIV 17 (492)
Q Consensus 8 ~~~~~~~~~~ 17 (492)
++|++=|-++
T Consensus 414 EIKGte~vii 423 (563)
T KOG1785|consen 414 EIKGTEPVII 423 (563)
T ss_pred Eeccccceee
Confidence 4555555443
No 109
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.39 E-value=5.9e+02 Score=23.80 Aligned_cols=82 Identities=10% Similarity=0.111 Sum_probs=48.0
Q ss_pred cccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 359 NEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 359 ~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
.|+..+. +.+.+.++...+++|.+.+....+-+..+..+-..--.+. -+.++.....-..+++..+..|.+++.
T Consensus 107 aEik~L~--s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtped----k~~v~~~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 107 AEIKELS--SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPED----KEQVYREYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHH--HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 3367788888888888888888777766543211111112 233444444445556666667777777
Q ss_pred hccCCCCC
Q 037051 439 YYQAGGSK 446 (492)
Q Consensus 439 yFgEd~~~ 446 (492)
-+-|+-.+
T Consensus 181 ~~~e~~pk 188 (201)
T KOG4603|consen 181 KLLEGLPK 188 (201)
T ss_pred HHHcCCcc
Confidence 77776544
No 110
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.39 E-value=3.5e+02 Score=25.28 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 037051 380 SALASRVVEIWELVTH 395 (492)
Q Consensus 380 ~~L~~~l~~i~~~l~~ 395 (492)
..|..++.++-..+..
T Consensus 35 ~~l~~d~~efg~~~~~ 50 (185)
T cd07628 35 SDLSVDYADLATQFQK 50 (185)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444333333
No 111
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=24.25 E-value=25 Score=36.62 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=0.0
Q ss_pred CCCHHHHHH
Q 037051 215 GLSIDILEK 223 (492)
Q Consensus 215 ~L~~e~l~~ 223 (492)
+|+.|.+..
T Consensus 148 GLSEEpvqq 156 (386)
T PF01698_consen 148 GLSEEPVQQ 156 (386)
T ss_dssp ---------
T ss_pred ccccccchh
Confidence 455555444
No 112
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.17 E-value=3.5e+02 Score=27.08 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAG 443 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd 443 (492)
++.......=++....+++..++.+.++.+.+.++..-.|+-
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666666553
No 113
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.01 E-value=2.3e+02 Score=26.96 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037051 373 DTFINTYSALASRVVEIWE 391 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~ 391 (492)
+++..++..|+..+.++.+
T Consensus 5 ~~~E~~~~~l~~~l~kl~K 23 (200)
T cd07603 5 EQVEADVSELETRLEKLLK 23 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444443
No 114
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.68 E-value=3.6e+02 Score=23.82 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 407 EMKGLLEECKEELKLVRNDQNRTMELV 433 (492)
Q Consensus 407 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~ 433 (492)
.+..-++....+++.++.....+....
T Consensus 93 ~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 93 EVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 115
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=23.66 E-value=5.8e+02 Score=23.45 Aligned_cols=191 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcc-----hhHHHHHHHHH-------HhcccccC-CCCCCCcccccchhhhccccccC
Q 037051 261 YKSEILQLKESLQALEMGYNELRTR-----VIFLKLLEAIL-------KAGNKMNA-GTSRGNAQRFNLSALRKLSDVKS 327 (492)
Q Consensus 261 f~~~~~~l~~~l~~l~~A~~~l~~S-----~~l~~lL~~iL-------~iGN~LN~-g~~rg~A~GFkL~sL~KL~d~Ks 327 (492)
.++.++++...+..+...+..|..+ ..++.++..-. .+|+.|.. |...+....|.
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------------ 91 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLG------------ 91 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHH------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhh------------
Q ss_pred CCCCchHHHHHHHHHHhhhhhcccccccccccc--cccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 037051 328 TNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNE--FNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFL 405 (492)
Q Consensus 328 ~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~e--L~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~ 405 (492)
..|+.+...++. +......+..-... +..+.... ..+.++...+..+.+...................-.
T Consensus 92 -----~~l~~~~~~~~~--i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~ 163 (229)
T PF03114_consen 92 -----NALEKFGEAMQE--IEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSK 163 (229)
T ss_dssp -----HHHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSB
T ss_pred -----hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQ 478 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~~~ 478 (492)
..-..=++.|..+++.+...+..-...|.....=+-+.. ...|..+-..|.....+...++..+++
T Consensus 164 ~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~-------l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 164 SSKEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPC-------LQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhC
No 116
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=23.52 E-value=4.8e+02 Score=22.46 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 037051 376 INTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRND 425 (492)
Q Consensus 376 ~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~ 425 (492)
.+.+..|.++++++++-+..+.+. .+.-...|..=+++...++..|+..
T Consensus 7 ~~q~~~l~~~v~~lRed~r~SEdr-sa~SRa~mhrRlDElV~Rv~~lEs~ 55 (112)
T PF07439_consen 7 HQQLGTLNAEVKELREDIRRSEDR-SAASRASMHRRLDELVERVTTLESS 55 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555444433210 1222334444444444444444433
No 117
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=23.47 E-value=34 Score=28.76 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCC
Q 037051 264 EILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAG 305 (492)
Q Consensus 264 ~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g 305 (492)
.+.-++..|..|..+-+.+-.......+=..++.||||++.-
T Consensus 21 ~m~Pvkk~LkkL~~~~~~l~~~e~a~~lk~~L~~IG~~I~~~ 62 (100)
T PF13907_consen 21 LMRPVKKSLKKLKKPKKGLPRKERAKILKKELLKIGDFIDSI 62 (100)
T ss_pred HhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555444444467777888899999998874
No 118
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.22 E-value=3.9e+02 Score=23.40 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 374 TFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTT 437 (492)
Q Consensus 374 ~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~ 437 (492)
++...+.+|..++.++.+.+........+.+..... -+.+++..+..++.....+...|+++.
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~-~~~~~~~~l~~v~~~v~~L~~s~~RL~ 92 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQAS-SIEELESVLQAVRSSVESLQSSYERLR 92 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888877776543221122221111 123333444555555555555555553
No 119
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=23.06 E-value=57 Score=40.76 Aligned_cols=8 Identities=25% Similarity=0.435 Sum_probs=4.6
Q ss_pred CccccccC
Q 037051 129 SMVWNEIN 136 (492)
Q Consensus 129 ~TiW~~l~ 136 (492)
..+|..+.
T Consensus 1523 ts~W~R~~ 1530 (1806)
T PRK14849 1523 SSMWMRHV 1530 (1806)
T ss_pred CceEEEEE
Confidence 45676654
No 120
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.95 E-value=5.4e+02 Score=22.81 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 420 KLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 420 ~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
..|+....++.+....+++=|.++. ..+.+|+..|...++..
T Consensus 99 ~~L~~~~~e~eeeSe~lae~fl~g~------------~d~~~Fl~~f~~~R~~y 140 (150)
T PF07200_consen 99 ARLQAAASEAEEESEELAEEFLDGE------------IDVDDFLKQFKEKRKLY 140 (150)
T ss_dssp HHHHHHHHHHHHHHHHHC-S-SSSH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC------------CCHHHHHHHHHHHHHHH
Confidence 3455566666666777777776532 23789999999888765
No 121
>PRK11020 hypothetical protein; Provisional
Probab=22.91 E-value=5e+02 Score=22.50 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 037051 375 FINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQ 426 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~ 426 (492)
+.++|..|.+.+..++..+.......+......+..=++....+|..|+...
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888898888877665433323233333333334445555554433
No 122
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.79 E-value=4.8e+02 Score=25.34 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 037051 459 VKEFLDMVDT 468 (492)
Q Consensus 459 l~~F~~~f~~ 468 (492)
+..|+..|..
T Consensus 100 l~~~~s~f~~ 109 (225)
T cd07590 100 LKRLRSVFPS 109 (225)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 123
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=22.63 E-value=69 Score=33.14 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=9.5
Q ss_pred CcccccchhhhccccccCCCC
Q 037051 310 NAQRFNLSALRKLSDVKSTNG 330 (492)
Q Consensus 310 ~A~GFkL~sL~KL~d~Ks~d~ 330 (492)
+-.||++..| ..+|+-|.
T Consensus 300 q~q~~~k~~L---~~tk~~dr 317 (377)
T KOG1945|consen 300 QLQGRKKKLL---GRTKSHDR 317 (377)
T ss_pred ccchHHHHHh---hccccchH
Confidence 4456665544 44555553
No 124
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=22.12 E-value=7.7e+02 Score=24.34 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCC
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKE-KWGH 451 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~-~~~~ 451 (492)
+-|....++|+.-+..++..++... ++.+......-..+++.....+...++++.+.++.+..-...-.+.+ +...
T Consensus 137 ~~I~sqQ~ELE~~L~~lE~k~~~~~---g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~ 213 (254)
T KOG2196|consen 137 EFILSQQQELEDLLDPLETKLELQS---GHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDP 213 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCc
Confidence 3344444555555555554444322 12333333344455555556666666666666666655443322221 1234
Q ss_pred hhchHHHHHHHHHHHHHHHH
Q 037051 452 PLQLFVIVKEFLDMVDTVCA 471 (492)
Q Consensus 452 p~efF~~l~~F~~~f~~a~~ 471 (492)
..++-+|+..-++.+.....
T Consensus 214 ~~qi~Kilnah~~sLqwl~d 233 (254)
T KOG2196|consen 214 IIQIEKILNAHMDSLQWLDD 233 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56788888888887765543
No 125
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.04 E-value=6.8e+02 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 412 LEECKEELKLVRNDQNRTMELVKRT 436 (492)
Q Consensus 412 l~~a~~~l~~L~~~~~~~~~~~~~~ 436 (492)
+..+..+|..++..+...+-.|+++
T Consensus 255 i~~a~~~L~~m~~~i~~~kp~WkKi 279 (424)
T PF03915_consen 255 ISRASKELKKMKEYIKTEKPIWKKI 279 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3333334443333333333333333
No 126
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.04 E-value=7.6e+02 Score=24.23 Aligned_cols=143 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred cchhhhccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 315 NLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVT 394 (492)
Q Consensus 315 kL~sL~KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~ 394 (492)
+|++. |.++-+..+-..-+|+|-..++ ++..-......-....+..++.+...+..|..++..+...+.
T Consensus 1 ~l~~~--l~~~n~~t~~~~~~~~l~~~~e---------~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~ 69 (264)
T PF06008_consen 1 QLDSQ--LQSVNALTGAWPAPYKLLSSIE---------DLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKAT 69 (264)
T ss_pred CHHHH--HhcCcchhhhhhhHHHHHHHHH---------HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 395 HCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 395 ~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
...... +........-+..|..-...++.....+.+...++..|=+++..... .+|-.+++.|..=+
T Consensus 70 ~~~~~~-~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~-----------~~l~~~l~ea~~mL- 136 (264)
T PF06008_consen 70 KVSRKA-QQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPS-----------EDLQRALAEAQRML- 136 (264)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCH-----------HHHHHHHHHHHHHH-
Q ss_pred HHHhhcc
Q 037051 475 RNLQKKN 481 (492)
Q Consensus 475 r~~~kk~ 481 (492)
++|++|+
T Consensus 137 ~emr~r~ 143 (264)
T PF06008_consen 137 EEMRKRD 143 (264)
T ss_pred HHHHhcc
No 127
>PRK11637 AmiB activator; Provisional
Probab=21.81 E-value=9.7e+02 Score=25.36 Aligned_cols=28 Identities=4% Similarity=0.087 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELV 433 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~ 433 (492)
..+..=+...+.++...++.+......+
T Consensus 106 ~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 106 DELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666665555444433
No 128
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.74 E-value=4.5e+02 Score=25.52 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=22.2
Q ss_pred ChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 451 HPLQLFVIVKEFLDMVDTVCADISRNLQ 478 (492)
Q Consensus 451 ~p~efF~~l~~F~~~f~~a~~e~~r~~~ 478 (492)
+...-+.|+.+.-..|.+++.-+.+..+
T Consensus 90 tL~RHrEILqdy~qef~rir~n~~a~~e 117 (231)
T KOG3208|consen 90 TLQRHREILQDYTQEFRRIRSNIDAKRE 117 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999988754433
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.70 E-value=4e+02 Score=26.04 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 371 ELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELV 433 (492)
Q Consensus 371 ~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~ 433 (492)
..+.+..+-..|...++.+..+++... .+...+...+...+.++..|+.....+...-
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~-----~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLE-----VYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554443 2445666666666666666666555554433
No 130
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=21.61 E-value=3.5e+02 Score=20.95 Aligned_cols=41 Identities=5% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 424 NDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 424 ~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
..-..++.....+-.||.+||=. .-|.+.+..+..++.+++
T Consensus 7 ~~~k~~kK~i~~v~~FF~~DPlG----------qkIa~l~kdw~~~~~~~r 47 (64)
T PF05596_consen 7 DDKKSVKKWIEEVRNFFYEDPLG----------QKIAQLAKDWNEICQEVR 47 (64)
T ss_pred hhHHhHHHHHHHHHHHhccCchH----------HHHHHHHHHHHHHHHHHH
Confidence 34456777788888899999844 224555555555555553
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.59 E-value=2.5e+02 Score=31.71 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=4.7
Q ss_pred cChHHHHHhhc
Q 037051 142 FDDEQIENLFG 152 (492)
Q Consensus 142 lD~~~lE~lF~ 152 (492)
+|...+..-|.
T Consensus 461 ~~~~~~~~~~~ 471 (620)
T PRK14954 461 VDLGSWQGKFM 471 (620)
T ss_pred cccHhhhhhcc
Confidence 44444443333
No 132
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.59 E-value=7.4e+02 Score=24.34 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRT 436 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~ 436 (492)
+.|...+..-..+-..+++.|++++..+...+++-
T Consensus 213 ~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~ 247 (289)
T COG4985 213 DEFQQHYVAEKSELQKRLAQLQTELDALRAELERQ 247 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 56666666666666666666666655555544443
No 133
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=21.50 E-value=5.3e+02 Score=22.19 Aligned_cols=93 Identities=11% Similarity=0.162 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCCC
Q 037051 373 DTFINTYSALASRVVEIWELVTHCA---SSEKGGFLKEMKGLLEECKEELKLVR----NDQNRTMELVKRTTKYYQAGGS 445 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~---~~e~d~f~~~m~~Fl~~a~~~l~~L~----~~~~~~~~~~~~~~~yFgEd~~ 445 (492)
+.|..++.+|...+..+-..-.... .+++-.|...|...++.-+.-+.+|+ -..+.+.+..+..+..||-.+.
T Consensus 8 eiVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~~~~ 87 (108)
T PF08855_consen 8 EIVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGYTPQ 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCCCcc
Confidence 4455555555555554443333222 12234566667666666655555543 2345677788888999997541
Q ss_pred CCCCCChhchHHHHHHHHHHHHHHHHHH
Q 037051 446 KEKWGHPLQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 446 ~~~~~~p~efF~~l~~F~~~f~~a~~e~ 473 (492)
+..++| ......++++.+++
T Consensus 88 -----~l~~~f---d~m~~tLe~mkq~~ 107 (108)
T PF08855_consen 88 -----DLSQMF---DQMNQTLERMKQEI 107 (108)
T ss_pred -----hHHHHH---HHHHHHHHHHHHhc
Confidence 133444 44444555555443
No 134
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=21.41 E-value=7.6e+02 Score=23.99 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 415 CKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQ 478 (492)
Q Consensus 415 a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~~~ 478 (492)
|+.++...++.+.+..+....++.-+-+... ....++...+..-+.-|++|.+-+ ++++
T Consensus 159 ae~elr~A~~kf~~~~E~a~~~M~~il~~~~----e~l~~L~~lv~AQl~Yh~q~~e~L-~~l~ 217 (220)
T cd07617 159 AEHELRVAQTEFDRQAEVTRLLLEGISSTHV----NHLRCLHEFVEAQATYYAQCYRHM-LDLQ 217 (220)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5677877888888877777776776665432 235566666666666666666665 3344
No 135
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=21.30 E-value=1.3e+03 Score=26.81 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.0
Q ss_pred CChhchHHHHHHHHHHHHHHHHHHHHH
Q 037051 450 GHPLQLFVIVKEFLDMVDTVCADISRN 476 (492)
Q Consensus 450 ~~p~efF~~l~~F~~~f~~a~~e~~r~ 476 (492)
.+..|+..|..+.+++++.-.++|+|.
T Consensus 918 v~aREWMRIcfeLlelLkahkK~iRRa 944 (1172)
T KOG0213|consen 918 VSAREWMRICFELLELLKAHKKEIRRA 944 (1172)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999888888888888888664
No 136
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=21.11 E-value=6.3e+02 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhC
Q 037051 204 KEIIEALLDGQGLSIDILEKLAKLS 228 (492)
Q Consensus 204 ~ei~~aild~~~L~~e~l~~L~~~~ 228 (492)
.++...|+|...|+...-+.++++.
T Consensus 54 yD~~~~il~~~~l~VNl~Es~LRm~ 78 (207)
T KOG4025|consen 54 YDFTKVILDDSELSVNLQESYLRMH 78 (207)
T ss_pred HHHHHHHHhhhccccchHHHHHHhh
Confidence 3577777777778777777777776
No 137
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.97 E-value=4.3e+02 Score=27.17 Aligned_cols=65 Identities=8% Similarity=0.182 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHH
Q 037051 409 KGLLEECKEELKLVRNDQ-NRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRN 476 (492)
Q Consensus 409 ~~Fl~~a~~~l~~L~~~~-~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~ 476 (492)
..|..+|..++.++...- ++.+...+++++||-=+|.. .+|..+-.-+...+++.+.-+++..|+
T Consensus 53 e~~~~~a~~~~~~~~~~~~~e~es~l~r~~effVI~Pv~---idP~gIi~R~~~Ll~~~~dr~~~~v~r 118 (368)
T COG4046 53 EKMENDAMKKVVELAVPRRDEAESTLERYAEFFVIPPVD---IDPAGIIDRLRHLLEMGEDRFRKLVRR 118 (368)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhheecCccc---CCccchHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444443333 45555667777777776654 456666666666666666666555443
No 138
>PRK09039 hypothetical protein; Validated
Probab=20.91 E-value=4.4e+02 Score=27.28 Aligned_cols=28 Identities=7% Similarity=0.143 Sum_probs=18.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037051 370 IELDTFINTYSALASRVVEIWELVTHCA 397 (492)
Q Consensus 370 v~~~~l~~~i~~L~~~l~~i~~~l~~~~ 397 (492)
-.+..|.++|..|+..+..++..|+...
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777666543
No 139
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.46 E-value=7.4e+02 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcch
Q 037051 260 NYKSEILQLKESLQALEMGYNELRTRV 286 (492)
Q Consensus 260 ~f~~~~~~l~~~l~~l~~A~~~l~~S~ 286 (492)
.-+..+++++..|..+.+.|+.+.++.
T Consensus 6 ~~E~~~~~l~~~l~kl~K~~~~~~~ag 32 (200)
T cd07603 6 QVEADVSELETRLEKLLKLCNGMVDSG 32 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999998887754
No 140
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=20.46 E-value=6.2e+02 Score=23.77 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhccccccCCCCC--------chHHHHHH
Q 037051 268 LKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGK--------TTLLYFVV 339 (492)
Q Consensus 268 l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k--------~tLLh~lv 339 (492)
....++.+...+..+|..+.=..+|.-|.. ..||=. --|..|+.+-..+++ .+++..|.
T Consensus 13 m~kai~~l~~~l~~irtGra~p~lld~I~V------------~~yg~~-~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~ 79 (185)
T PRK00083 13 MEKAVEALKRELAKIRTGRANPSLLDGIKV------------DYYGSP-TPLNQVASISVPEARTLLIQPWDKSMLKAIE 79 (185)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHcCCeEE------------EECCCC-ccHHHceeeecCCCCEEEEEeCCHhHHHHHH
Confidence 344455555555555554443444433322 234411 134555555444443 26778888
Q ss_pred HHHHhhh
Q 037051 340 EQRDNKY 346 (492)
Q Consensus 340 ~~ve~~~ 346 (492)
+.+....
T Consensus 80 kAI~~s~ 86 (185)
T PRK00083 80 KAIRASD 86 (185)
T ss_pred HHHHHCC
Confidence 7776543
No 141
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=20.42 E-value=8.2e+02 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEE 418 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~ 418 (492)
..|...|..||..=-.-
T Consensus 205 ~Df~~~m~~yL~~Qi~F 221 (237)
T PF10456_consen 205 EDFKSMMKTYLQQQIAF 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34666666666554333
No 142
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.33 E-value=8.3e+02 Score=24.04 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=12.1
Q ss_pred HHcchhHHHHHHHHHHhcccccCC
Q 037051 282 LRTRVIFLKLLEAILKAGNKMNAG 305 (492)
Q Consensus 282 l~~S~~l~~lL~~iL~iGN~LN~g 305 (492)
|..|+.|+.+|..- .+-.|+=.+
T Consensus 4 Ls~~~~f~~FLts~-dw~a~~kq~ 26 (240)
T cd07667 4 LSFNEHFNVFLTAK-DLNAYKKQG 26 (240)
T ss_pred cccChHHHHHHcch-hHHHHhhcc
Confidence 44566666666655 444444333
No 143
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.15 E-value=3.9e+02 Score=20.12 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037051 412 LEECKEELKLVRNDQNRTMELVKRTTKYY 440 (492)
Q Consensus 412 l~~a~~~l~~L~~~~~~~~~~~~~~~~yF 440 (492)
+...+.+.+.+.+...++.+.+++++..|
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
Done!