Query 037051
Match_columns 492
No_of_seqs 273 out of 1188
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eah_A Formin-like protein 3, 100.0 3.3E-71 1.1E-75 577.1 37.7 352 104-476 9-383 (402)
2 2j1d_G DAAM1, disheveled-assoc 100.0 1E-70 3.5E-75 586.8 39.5 360 106-475 7-397 (483)
3 3obv_E Protein diaphanous homo 100.0 7.2E-71 2.5E-75 582.3 37.2 359 107-474 3-384 (457)
4 1ux5_A BNI1 protein; structura 100.0 1.6E-67 5.4E-72 552.9 27.5 351 108-480 3-405 (411)
5 1v9d_A Diaphanous protein homo 100.0 3.8E-64 1.3E-68 514.6 31.2 291 176-475 4-314 (340)
6 4hpq_C ATG17, KLTH0D15642P; au 87.2 9.6 0.00033 39.0 14.3 65 370-439 235-299 (413)
7 1nxk_A MAP kinase-activated pr 65.3 1.4 4.9E-05 44.5 0.3 11 273-283 168-178 (400)
8 2avr_X Adhesion A; antiparalle 59.4 57 0.0019 27.3 8.9 89 373-480 5-94 (119)
9 2q12_A DIP13 alpha, DCC-intera 59.3 1.2E+02 0.004 28.4 16.5 56 244-305 15-75 (265)
10 3t98_B Nucleoporin NUP58/NUP45 57.3 60 0.002 25.9 8.5 34 409-443 58-91 (93)
11 4egw_A Magnesium transport pro 54.6 74 0.0025 30.1 10.5 102 333-439 156-266 (280)
12 2iub_A CORA, divalent cation t 52.0 96 0.0033 30.7 11.2 98 334-435 181-286 (363)
13 3okq_A BUD site selection prot 48.6 1.3E+02 0.0045 25.8 10.5 61 402-467 53-113 (141)
14 3r84_A Mediator of RNA polymer 46.7 75 0.0026 25.0 7.3 67 411-478 2-68 (86)
15 3ck6_A Putative membrane trans 44.6 62 0.0021 30.0 8.0 66 370-436 171-236 (252)
16 3nvo_A Zinc transport protein 42.8 91 0.0031 29.0 8.9 67 372-438 189-255 (264)
17 3sjb_C Golgi to ER traffic pro 42.2 1.3E+02 0.0044 24.0 8.3 60 376-437 22-83 (93)
18 1ez3_A Syntaxin-1A; three heli 41.6 1.4E+02 0.0049 24.3 9.7 102 374-478 16-123 (127)
19 3thg_A Ribulose bisphosphate c 38.7 65 0.0022 26.4 5.9 34 206-241 13-46 (107)
20 3oja_B Anopheles plasmodium-re 36.5 90 0.0031 32.7 8.6 42 405-446 546-587 (597)
21 2lw1_A ABC transporter ATP-bin 33.3 1.7E+02 0.0058 22.7 7.9 24 372-395 24-47 (89)
22 4ev6_A Magnesium transport pro 33.2 2E+02 0.0069 27.9 10.0 15 377-391 197-211 (339)
23 3okq_A BUD site selection prot 32.7 1.6E+02 0.0053 25.3 7.6 66 372-438 56-128 (141)
24 1vcs_A Vesicle transport throu 32.4 1.8E+02 0.0062 23.2 7.9 55 376-430 37-94 (102)
25 3pgw_A U1-A; protein-RNA compl 29.7 1.9E+02 0.0066 26.6 8.9 14 141-154 218-231 (282)
26 3ghg_A Fibrinogen alpha chain; 28.1 1.5E+02 0.0051 31.0 7.9 15 426-440 108-122 (562)
27 4e9m_A Nucleotide-binding olig 27.2 1E+02 0.0036 26.5 5.6 48 178-231 23-70 (144)
28 4i0x_B ESAT-6-like protein MAB 26.8 1.9E+02 0.0066 22.6 7.1 35 402-440 56-90 (103)
29 3fav_B ESAT-6, 6 kDa early sec 26.1 2.1E+02 0.0074 21.6 7.6 63 375-441 17-83 (94)
30 2lf0_A Uncharacterized protein 25.6 2.9E+02 0.0099 22.9 8.2 51 375-425 8-58 (123)
31 3onj_A T-snare VTI1; helix, HA 25.5 2.5E+02 0.0085 22.2 7.7 62 369-430 26-93 (97)
32 2o3l_A Hypothetical protein; s 25.3 1.7E+02 0.0057 22.9 6.1 50 416-472 7-56 (85)
33 2v71_A Nuclear distribution pr 23.7 2.9E+02 0.0099 24.9 8.2 98 375-473 47-146 (189)
34 3zbh_A ESXA; unknown function, 23.5 2.4E+02 0.0083 21.3 8.4 15 402-416 52-66 (99)
35 2h8h_A Proto-oncogene tyrosine 23.5 18 0.00061 37.9 0.2 9 202-210 224-232 (535)
36 3gwk_C SAG1039, putative uncha 23.4 2.5E+02 0.0085 21.4 10.0 19 402-420 51-69 (98)
37 3u7d_B Protein HEG homolog 1; 22.4 25 0.00085 20.7 0.5 16 16-31 9-24 (26)
38 3etw_A Adhesin A; antiparallel 22.1 3.4E+02 0.012 22.5 10.2 88 374-479 6-93 (119)
39 2hfi_A Hypothetical protein YP 22.0 2.4E+02 0.0083 23.8 7.0 56 375-430 6-62 (131)
40 2fic_A Bridging integrator 1; 22.0 4.5E+02 0.015 23.9 13.6 26 452-477 221-246 (251)
41 2vs0_A Virulence factor ESXA; 22.0 2.6E+02 0.0088 21.1 9.7 38 401-442 48-85 (97)
42 2p22_C Protein SRN2; endosome, 20.3 4.7E+02 0.016 23.4 10.6 46 419-474 130-175 (192)
43 2pbd_V VAsp, vasodilator-stimu 20.3 38 0.0013 23.0 1.2 6 112-117 31-36 (43)
No 1
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=3.3e-71 Score=577.07 Aligned_cols=352 Identities=22% Similarity=0.343 Sum_probs=310.3
Q ss_pred CCcccccccccccccccccccccCCCccccccCCCCc--ccChHHHHHhhccccccccccccccccCCCCCCCCCCCcce
Q 037051 104 SSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSL--RFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAEL 181 (492)
Q Consensus 104 ~~~~~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~--~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i 181 (492)
+..+..|+.+||++||++|+++.+++|||+++++..+ .+|+++||++|+.+...... +...++....+++++.|
T Consensus 9 ~Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~----~~~~~k~k~~~k~~~~v 84 (402)
T 4eah_A 9 IKKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPAL----DLICSKNKTAQKAASKV 84 (402)
T ss_dssp -CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC------------------------CB
T ss_pred CCCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCcc----ccchhcccccccCCCce
Confidence 3445678899999999999989999999999998876 68999999999976432110 11111111223456789
Q ss_pred eccchhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc-------------------chHhHHHHH
Q 037051 182 FILEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ-------------------DDANTFLFH 240 (492)
Q Consensus 182 ~lLD~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~-------------------~~aE~Fl~~ 240 (492)
+|||+||+|||+|+|++|++++++|++||+ |.+.|+.|.|+.|++++||+ +++|||+++
T Consensus 85 ~lLd~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~ 164 (402)
T 4eah_A 85 TLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLL 164 (402)
T ss_dssp CSSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHH
Confidence 999999999999999999999999999998 67799999999999999997 479999999
Q ss_pred HHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhh
Q 037051 241 ILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALR 320 (492)
Q Consensus 241 ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~ 320 (492)
|+ .||+|..||+||+|+.+|++.+.++.+.|..+..||++|++|..|+.||++||++|||||+| .||+|+||+|++|.
T Consensus 165 l~-~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~ 242 (402)
T 4eah_A 165 FS-KVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLD 242 (402)
T ss_dssp HH-HSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGG
T ss_pred HH-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHH
Confidence 85 89999999999999999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 037051 321 KLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSE 400 (492)
Q Consensus 321 KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e 400 (492)
||.|||++|+++||||||+++++++ +|++++|.+||.+|.+|++|++++|.+++++|++++..+++++...
T Consensus 243 KL~d~Ks~d~k~TLLh~l~~~~~~~-----~p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~~---- 313 (402)
T 4eah_A 243 LLLDTKSTDRKMTLLHFIALTVKEK-----YPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIH---- 313 (402)
T ss_dssp SSSSSBCTTSSSBHHHHHHHHHHHH-----CGGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHhccCCCCCccHHHHHHHHHHhh-----hHHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 9999999999999999999998765 4999999999999999999999999999999999999998877532
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHH
Q 037051 401 KGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRN 476 (492)
Q Consensus 401 ~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~ 476 (492)
| ...|..|+..|..++..|+..+.++.+.|.+++.|||||+++ .++++||++|.+|+..|++|++||+++
T Consensus 314 -d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~---~~~~~fF~~~~~F~~~fk~A~~en~~r 383 (402)
T 4eah_A 314 -D--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT---TPPSVFFPVFVRFIRSYKEAEQENEAR 383 (402)
T ss_dssp -C--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 248999999999999999999999999999999999999876 579999999999999999999999654
No 2
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=1e-70 Score=586.81 Aligned_cols=360 Identities=26% Similarity=0.404 Sum_probs=315.9
Q ss_pred cccccccccccccccccccccCCCccccccCCCCc--ccChHHHHHhhccccccccc----cccccccCCC-C-CCCCCC
Q 037051 106 RTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSL--RFDDEQIENLFGYSTINRRL----YERSKTSMSS-G-SSNAAP 177 (492)
Q Consensus 106 ~~~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~--~lD~~~lE~lF~~~~~~~~~----~~~~~~~~s~-~-~~~~~k 177 (492)
..+.|..+||++||++|+.+.+++|||+++++..+ .+|+++||++|+.+...... +...+...+. . ....++
T Consensus 7 ~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk 86 (483)
T 2j1d_G 7 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLK 86 (483)
T ss_dssp CCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC----------------------------
T ss_pred CCCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccC
Confidence 34557789999999999888899999999998754 58999999999986543220 0000000000 0 012346
Q ss_pred CcceeccchhhHHHHHHHHhhcCCCHHHHHHHHH--hC-CCCCHHHHHHHHhhCCCc----------------chHhHHH
Q 037051 178 TAELFILEPRKCQNTAIVLRSLAISQKEIIEALL--DG-QGLSIDILEKLAKLSSSQ----------------DDANTFL 238 (492)
Q Consensus 178 ~~~i~lLD~kRaqNi~I~L~~lk~s~~ei~~ail--d~-~~L~~e~l~~L~~~~Pt~----------------~~aE~Fl 238 (492)
++.|+|||+||+|||+|+|++|++++++|++||+ |. +.|+.|.|+.|++++||+ +++||||
T Consensus 87 ~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl 166 (483)
T 2j1d_G 87 VKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFL 166 (483)
T ss_dssp -CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHHH
T ss_pred CCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHH
Confidence 7889999999999999999999999999999998 66 789999999999999997 6899999
Q ss_pred HHHHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchh
Q 037051 239 FHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSA 318 (492)
Q Consensus 239 ~~ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~s 318 (492)
++|+ .||+|.+||+||+|+.+|++.+.++.+.|..|..||++|++|..|+.||++||++|||||+| .||+|+||+|++
T Consensus 167 ~~l~-~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~s 244 (483)
T 2j1d_G 167 FEMS-RINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISS 244 (483)
T ss_dssp HHHH-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGG
T ss_pred HHHh-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHH
Confidence 9985 89999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred hhccccccCC-CCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037051 319 LRKLSDVKST-NGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCA 397 (492)
Q Consensus 319 L~KL~d~Ks~-d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~ 397 (492)
|.||.|||++ |+++|||||||++++++ +|++++|.+||.+|..|++|++++|.+++.+|.+++..++.+++...
T Consensus 245 L~KL~d~Ks~~d~k~TLLhylv~~v~~~-----~p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~ 319 (483)
T 2j1d_G 245 LNKIADTKSSIDKNITLLHYLITIVENK-----YPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQK 319 (483)
T ss_dssp GGGGGGSBCSSCTTCBHHHHHHHHHHHH-----CGGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCCCCccHHHHHHHHHHHh-----CchhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999995 99999999999998775 49999999999999999999999999999999999999999998764
Q ss_pred c---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 398 S---SEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 398 ~---~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
. +..|.|...|..|+..|+.++..|+..+.++.+.|++++.||||++.+ .++++||++|.+|+..|++|++||+
T Consensus 320 ~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~---~~~~~fF~~~~~F~~~f~~A~~en~ 396 (483)
T 2j1d_G 320 SQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK---IQPDEFFGIFDQFLQAVSEAKQENE 396 (483)
T ss_dssp TSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTS---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 245899999999999999999999999999999999999999999876 5799999999999999999999985
Q ss_pred H
Q 037051 475 R 475 (492)
Q Consensus 475 r 475 (492)
+
T Consensus 397 ~ 397 (483)
T 2j1d_G 397 N 397 (483)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=7.2e-71 Score=582.32 Aligned_cols=359 Identities=23% Similarity=0.355 Sum_probs=314.9
Q ss_pred ccccccccccccccccccccC-CCccccccCCCCcc--cChHHHHHhhccccccccccccccccCCCCCCCCCCCcceec
Q 037051 107 TVVGHVKLKSLHWDKVATNVD-HSMVWNEINDGSLR--FDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFI 183 (492)
Q Consensus 107 ~~~p~~~lk~l~W~ki~~~~~-~~TiW~~l~~~~~~--lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~l 183 (492)
.+.|.++||++||.+|+.+.+ ++|||.++++.++. -++..||.+|+.+....+.....+....+....+++++.|+|
T Consensus 3 ~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~l 82 (457)
T 3obv_E 3 VYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKV 82 (457)
T ss_dssp CCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSS
T ss_pred CCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeEe
Confidence 467899999999999987665 69999999887652 235889999998754322111000000011122456788999
Q ss_pred cchhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc----------------chHhHHHHHHHhhh
Q 037051 184 LEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ----------------DDANTFLFHILKVI 245 (492)
Q Consensus 184 LD~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~----------------~~aE~Fl~~ll~~i 245 (492)
||+||+|||+|+|++|++++++|++||+ |.+.|+.|.|+.|++++||+ +++|||++.| ..|
T Consensus 83 LD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l-~~I 161 (457)
T 3obv_E 83 LDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVM-GTV 161 (457)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHH-TSS
T ss_pred cCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHH-Hcc
Confidence 9999999999999999999999999998 67799999999999999997 6899999998 589
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhccccc
Q 037051 246 PSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDV 325 (492)
Q Consensus 246 p~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~ 325 (492)
|+|..||+||+|+.+|++.+.++.+.|..|..||++|++|..|+.||++||++|||||+|+.+|+|+||+|++|.||.||
T Consensus 162 p~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~ 241 (457)
T 3obv_E 162 PRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDT 241 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCc
Q 037051 326 KSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCAS--SEKGG 403 (492)
Q Consensus 326 Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~--~e~d~ 403 (492)
|++|+++||||||+++++++ +|++++|.+||.+|..|++|++++|..++++|.+++..++..++.+.. ++.|.
T Consensus 242 Ks~d~k~TLLh~l~~~v~~~-----~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~ 316 (457)
T 3obv_E 242 KSADQKMTLLHFLAELCEND-----HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 316 (457)
T ss_dssp BCSSTTCBHHHHHHHHHHHH-----CGGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCC
T ss_pred hcCCCCccHHHHHHHHHHHc-----CccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHH
Confidence 99999999999999998775 499999999999999999999999999999999999999999987642 34589
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 404 FLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 404 f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
|..+|..|+..|+.++..|+..+..+.+.|++++.|||||+.+ .++++||++|.+|+.+|++|++||.
T Consensus 317 f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~---~~~~eFF~~~~~F~~~fkkA~~eN~ 384 (457)
T 3obv_E 317 FVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK---LSVEEFFMDLHNFRNMFLQAVKENQ 384 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT---SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 5799999999999999999999985
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=1.6e-67 Score=552.86 Aligned_cols=351 Identities=18% Similarity=0.268 Sum_probs=305.5
Q ss_pred cccccccccccccccccccCCCccccccCCCCcc--c----ChHHHHHhhccccccccccccccccCCCCCCCCCCCcce
Q 037051 108 VVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLR--F----DDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAEL 181 (492)
Q Consensus 108 ~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~~--l----D~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i 181 (492)
+.|+.+||++||++|+. .++|||+++++..+. + |+++||++|+.+........ .+++++.+
T Consensus 3 p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~~~~-----------k~~~~~~v 69 (411)
T 1ux5_A 3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASK-----------RKEDLQKI 69 (411)
T ss_dssp CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHH-----------HHHTTTSB
T ss_pred CCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhccccccccccc-----------ccCCCCee
Confidence 45778999999999975 899999999875542 2 78999999998764321100 12346779
Q ss_pred eccchhhHHHHHHHHhhc-CCCHHHHHHHHHh--CCCCCHHH-HHH------------HH-hhCCCc-------------
Q 037051 182 FILEPRKCQNTAIVLRSL-AISQKEIIEALLD--GQGLSIDI-LEK------------LA-KLSSSQ------------- 231 (492)
Q Consensus 182 ~lLD~kRaqNi~I~L~~l-k~s~~ei~~aild--~~~L~~e~-l~~------------L~-~~~Pt~------------- 231 (492)
+|||+||+|||+|+|++| ++++++|++||+. .+.|+.+. ++. |+ +++|+.
T Consensus 70 ~lLd~kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~ 149 (411)
T 1ux5_A 70 TFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAK 149 (411)
T ss_dssp CCSCHHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCC
T ss_pred eecChHHHHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhh
Confidence 999999999999999999 8999999999984 44676333 332 44 688843
Q ss_pred ---------chHhHHHHHHHhhh-ccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhccc
Q 037051 232 ---------DDANTFLFHILKVI-PSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNK 301 (492)
Q Consensus 232 ---------~~aE~Fl~~ll~~i-p~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~ 301 (492)
+++|||+++++..| |++.+||+||+|+.+|++.+.++.+.|..+..||++|++|..|+.||++||++|||
T Consensus 150 ~~~~d~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~ 229 (411)
T 1ux5_A 150 PPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNF 229 (411)
T ss_dssp CCSSCSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccCChhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCc
Confidence 57899999976568 67899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcccccchhhhccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHH
Q 037051 302 MNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSA 381 (492)
Q Consensus 302 LN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~ 381 (492)
||+|+. +|+||+|++|.||.|||++|+++|||||||++++++ +|++++|.+||.+|.+|++|++++|.+++++
T Consensus 230 mN~g~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~-----~p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~ 302 (411)
T 1ux5_A 230 MNDTSK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN-----YPSFNDFLSELEPVLDVVKVSIEQLVNDCKD 302 (411)
T ss_dssp HSCGGG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH-----CGGGGGHHHHTHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCCCC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh-----CcccccccchhhhHHHHHCCCHHHHHHHHHH
Confidence 999975 799999999999999999999999999999998775 4999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhch
Q 037051 382 LASRVVEIWELVTHCA------SSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQL 455 (492)
Q Consensus 382 L~~~l~~i~~~l~~~~------~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~ef 455 (492)
|.+++..++++++... .++.|.|...|..|+..|+.++..|++.+.++.+.|++++.||||+++. ..++++|
T Consensus 303 L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~--~~~~~~f 380 (411)
T 1ux5_A 303 FSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGD--KFAKISF 380 (411)
T ss_dssp HHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCHHHH
Confidence 9999999999987532 1345899999999999999999999999999999999999999999863 2479999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 037051 456 FVIVKEFLDMVDTVCADISRNLQKK 480 (492)
Q Consensus 456 F~~l~~F~~~f~~a~~e~~r~~~kk 480 (492)
|++|.+|+.+|++|++||.++.+.+
T Consensus 381 F~~~~~F~~~f~~a~~en~~~~e~~ 405 (411)
T 1ux5_A 381 FKKFADFINEYKKAQAQNLAAEEEE 405 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997554433
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=3.8e-64 Score=514.59 Aligned_cols=291 Identities=25% Similarity=0.394 Sum_probs=251.7
Q ss_pred CCCcceeccchhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc----------------chHhHH
Q 037051 176 APTAELFILEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ----------------DDANTF 237 (492)
Q Consensus 176 ~k~~~i~lLD~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~----------------~~aE~F 237 (492)
++++.|+|||+||+|||+|+|++|++++++|++||+ |.+.|+.|.|+.|++++||+ +++|||
T Consensus 4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF 83 (340)
T 1v9d_A 4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQF 83 (340)
T ss_dssp --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHH
T ss_pred CCCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHH
Confidence 567889999999999999999999999999999998 56789999999999999997 689999
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccch
Q 037051 238 LFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLS 317 (492)
Q Consensus 238 l~~ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~ 317 (492)
++.|+ .||++..||+||+|+.+|++.+.++.+.+..|..||++|++|..|+.||++||++|||||+|+.+|+|+||+|+
T Consensus 84 ~~~l~-~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~ 162 (340)
T 1v9d_A 84 GVVMG-TVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNIS 162 (340)
T ss_dssp HHHHH-TSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------C
T ss_pred HHHHH-CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehH
Confidence 99985 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037051 318 ALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCA 397 (492)
Q Consensus 318 sL~KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~ 397 (492)
+|.||.|||++|+++|||||||++++++ +|++++|.+||.+|..|++|++++|..++..|.+++..++..+..+.
T Consensus 163 sL~KL~d~Ks~d~k~TLLh~lv~~~~~~-----~p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~ 237 (340)
T 1v9d_A 163 FLCKLRDTKSADQKMTLLHFLAELCEND-----HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFP 237 (340)
T ss_dssp CHHHHHHSBCSSTTSBHHHHHHHHHHHS-----CCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhhhhhcCCCCCccHHHHHHHHHHHh-----CchhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998765 59999999999999999999999999999999999999999888764
Q ss_pred --cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHH
Q 037051 398 --SSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISR 475 (492)
Q Consensus 398 --~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r 475 (492)
.++.|.|...|..|+..|+.++..|+..+.++.+.|++++.|||||+++ .++++||++|.+|+.+|++|++||++
T Consensus 238 ~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~---~~~~~fF~~~~~F~~~f~~a~~en~~ 314 (340)
T 1v9d_A 238 AATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK---LSVEEFFMDLHNFRNMFLQAVKENQK 314 (340)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356899999999999999999999999999999999999999999876 67999999999999999999999963
No 6
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=87.25 E-value=9.6 Score=39.04 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 370 IELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKY 439 (492)
Q Consensus 370 v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~y 439 (492)
..++.|.+|-.+|..=+++++..++.+. .....+..|++........+........+.|..+.+|
T Consensus 235 elleVv~~Da~EL~~V~~eL~~~~~~i~-----~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~ 299 (413)
T 4hpq_C 235 NLFEIVERDDKDLAAINSLLQDAAIDVA-----SFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEY 299 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3466666666666665555555444332 3345666666666666666666656665555554444
No 7
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=65.33 E-value=1.4 Score=44.54 Aligned_cols=11 Identities=9% Similarity=0.154 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 037051 273 QALEMGYNELR 283 (492)
Q Consensus 273 ~~l~~A~~~l~ 283 (492)
..+..|+.-|.
T Consensus 168 ~qi~~aL~~LH 178 (400)
T 1nxk_A 168 KSIGEAIQYLH 178 (400)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 8
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=59.38 E-value=57 Score=27.28 Aligned_cols=89 Identities=10% Similarity=0.193 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCh
Q 037051 373 DTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHP 452 (492)
Q Consensus 373 ~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p 452 (492)
.+|.+.++.|+..+..+... |...| ..-..-.+.|..+|.....++..+.+.+.++-.- + .
T Consensus 5 ~~V~s~l~~LEaeyq~L~~k-------E~qry-nqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~-----~------~ 65 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQ-------EEARF-NEERAQADAARQALAQNEQVYNELSQRAQRLQAE-----A------N 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----T------T
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h------c
Confidence 45666777777777665432 11222 3455667888888888888899988888877541 1 1
Q ss_pred hchHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 037051 453 LQLFV-IVKEFLDMVDTVCADISRNLQKK 480 (492)
Q Consensus 453 ~efF~-~l~~F~~~f~~a~~e~~r~~~kk 480 (492)
..||+ .....+..|+.+..+++++|.+.
T Consensus 66 ~~~yK~eY~~L~KkYk~~~~~Ld~eI~~q 94 (119)
T 2avr_X 66 TRFYKSQYQELASKYEDALKKLEAEMEQQ 94 (119)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22332 36666777777777776666544
No 9
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=59.33 E-value=1.2e+02 Score=28.45 Aligned_cols=56 Identities=4% Similarity=-0.018 Sum_probs=38.5
Q ss_pred hhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcc-----hhHHHHHHHHHHhcccccCC
Q 037051 244 VIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTR-----VIFLKLLEAILKAGNKMNAG 305 (492)
Q Consensus 244 ~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S-----~~l~~lL~~iL~iGN~LN~g 305 (492)
+=|.+++.|. .|+..++.++..|..+..+|+.+.++ .....+...+..+|++-+++
T Consensus 15 DSP~FR~~l~------~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~ 75 (265)
T 2q12_A 15 DSPQTRSLLG------VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPL 75 (265)
T ss_dssp SHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-
T ss_pred CChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3466666553 46778888888888888888777654 34567777788888765443
No 10
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=57.30 E-value=60 Score=25.94 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 037051 409 KGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAG 443 (492)
Q Consensus 409 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd 443 (492)
..|+.-| .++..|.+..+.+++.|....+|+-.|
T Consensus 58 ~~FiaLA-a~l~~lH~~V~~~Ke~Yl~~rr~~~~d 91 (93)
T 3t98_B 58 QTFVALA-AQLQSIHENVKVLKEQYLSYRKMFLGD 91 (93)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555 788999999999999999999888665
No 11
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=54.64 E-value=74 Score=30.12 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhhhhcccccccccccccccHHHHh--ccCHHHHHHHHHHHHHHHHHHHH-------HHHhhccCCCCc
Q 037051 333 TLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAV--RIELDTFINTYSALASRVVEIWE-------LVTHCASSEKGG 403 (492)
Q Consensus 333 tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As--~v~~~~l~~~i~~L~~~l~~i~~-------~l~~~~~~e~d~ 403 (492)
-||+.|...+-+.| ++-+..+.+++..++..- ..+ .+....+-.|++++..+++ .+......+...
T Consensus 156 ~ll~~lld~ivd~y----~~~l~~i~~~id~lE~~l~~~~~-~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~ 230 (280)
T 4egw_A 156 FLLYHILNEITRSY----SRILMNLEDELEELEDKLLAGYD-REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI 230 (280)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTTCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccc
Confidence 35555555443333 244444555555555432 111 2223344455555544444 444444344455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 404 FLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKY 439 (492)
Q Consensus 404 f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~y 439 (492)
+.+....++.+....+..+.+......+....++..
T Consensus 231 ~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~ 266 (280)
T 4egw_A 231 TTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDI 266 (280)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888877777776666655555555555443
No 12
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=52.03 E-value=96 Score=30.66 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccHHHHhccC-HHHHHHHHHHHHHHHHHHHH-------HHHhhccCCCCchH
Q 037051 334 LLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIE-LDTFINTYSALASRVVEIWE-------LVTHCASSEKGGFL 405 (492)
Q Consensus 334 LLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~-~~~l~~~i~~L~~~l~~i~~-------~l~~~~~~e~d~f~ 405 (492)
||+.|...+-+.+ ++.+..+.+++..++..---+ -.+...++..|++++..+++ .+......+...+.
T Consensus 181 ll~~lld~ivd~y----~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~ 256 (363)
T 2iub_A 181 LLYSLIDALVDDY----FVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 256 (363)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 5555554443333 244445555555555432111 12233445555555554444 44444333333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 406 KEMKGLLEECKEELKLVRNDQNRTMELVKR 435 (492)
Q Consensus 406 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 435 (492)
+....++.++...+..+.+......+....
T Consensus 257 ~~~~~~lrDv~d~~~~~~e~~~~~re~l~~ 286 (363)
T 2iub_A 257 KETVPYFRDVYDHTIQIADTVETFRDIVSG 286 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666655555555444443333333
No 13
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=48.60 E-value=1.3e+02 Score=25.83 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVD 467 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~ 467 (492)
....+.+..=+..|..+|..+++.+...+-.|+++++-=-+. -+.-++||..-.+++..++
T Consensus 53 ~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~-----VceEQqfl~~QedL~~DL~ 113 (141)
T 3okq_A 53 KKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDK-----VCEEQQFLTLQEELILDLK 113 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666666654321000 0223566666555554443
No 14
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=46.66 E-value=75 Score=25.01 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 411 LLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQ 478 (492)
Q Consensus 411 Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~~~ 478 (492)
|+++--..|.++....-.+......+..-|++..... ...-.+|=....+|+..+..+.-+++|+++
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~-~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk 68 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGN-ESVKPQFENHVKQFYERLDKSTTQLRKEIQ 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555432211 134567777888899999888888877754
No 15
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=44.58 E-value=62 Score=30.02 Aligned_cols=66 Identities=5% Similarity=-0.079 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 370 IELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRT 436 (492)
Q Consensus 370 v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~ 436 (492)
..+-.+..++-.+++.+.-.+..+......+.. +.+....++.+....+..+.+......+....+
T Consensus 171 ~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~-~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~~l 236 (252)
T 3ck6_A 171 YNHIAAQKALISIKRFIRPQQYAIRDLIESESE-LVTSRPHQYRFAHNNITRINETIEFYLGEVALF 236 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666655443333 555555666666666655555544444443333
No 16
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=42.79 E-value=91 Score=28.99 Aligned_cols=67 Identities=6% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 372 LDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 372 ~~~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
+-.+..++-.|++.+.-.+..+......+...+.+....++.++...+..+.+......+....+..
T Consensus 189 l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l~d 255 (264)
T 3nvo_A 189 LALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMAD 255 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666544444566677777777777777666655555555544443
No 17
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=42.24 E-value=1.3e+02 Score=23.98 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 376 INTYSALASRVVEIWELVTHCASSEKGGFL--KEMKGLLEECKEELKLVRNDQNRTMELVKRTT 437 (492)
Q Consensus 376 ~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~--~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~ 437 (492)
......|.+++..++.++...+.. |.|. .++..=++....+|+.+.+.+......|...+
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQ--DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQ--DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887766533 5565 46666777777777777777777777776543
No 18
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=41.62 E-value=1.4e+02 Score=24.30 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-c-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----C
Q 037051 374 TFINTYSALASRVVEIWELVTHC-A-SSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSK----E 447 (492)
Q Consensus 374 ~l~~~i~~L~~~l~~i~~~l~~~-~-~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~----~ 447 (492)
+|..+|..|...+.+++..-..+ . ....+.....|.....+.......++..++.+.....+. =|.+++. .
T Consensus 16 ~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Ri 92 (127)
T 1ez3_A 16 EIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRI 92 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCCcHHHHH
Confidence 34445555555555444332221 1 111234556677777777777777777666666554442 1111111 0
Q ss_pred CCCChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 448 KWGHPLQLFVIVKEFLDMVDTVCADISRNLQ 478 (492)
Q Consensus 448 ~~~~p~efF~~l~~F~~~f~~a~~e~~r~~~ 478 (492)
.......+-..|.+-+..|..+-.+.+++.+
T Consensus 93 r~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 93 RKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111234445566666677776666644444
No 19
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=38.70 E-value=65 Score=26.37 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhCCCcchHhHHHHHH
Q 037051 206 IIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHI 241 (492)
Q Consensus 206 i~~aild~~~L~~e~l~~L~~~~Pt~~~aE~Fl~~l 241 (492)
|+..|...+.++.+.+++|..-.|.. +=-||-+|
T Consensus 13 iv~gif~~Dgls~~dv~~LVd~Fp~Q--siDFFGAL 46 (107)
T 3thg_A 13 VCKGIFRTDNVADDDIVKLVDTFPGQ--SIDFFGAL 46 (107)
T ss_dssp HHHHHTTTTTCCHHHHHHHHHHSTTC--CHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHcCCCC--CchHHHHH
Confidence 44455578899999999999999964 44566665
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.46 E-value=90 Score=32.75 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 037051 405 LKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSK 446 (492)
Q Consensus 405 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~ 446 (492)
...|...++..+.++.+++++...+...++++.+-+.++++.
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 457888888999999999999999999999999998887764
No 21
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.28 E-value=1.7e+02 Score=22.71 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037051 372 LDTFINTYSALASRVVEIWELVTH 395 (492)
Q Consensus 372 ~~~l~~~i~~L~~~l~~i~~~l~~ 395 (492)
++.|...|..|+..+..++..+..
T Consensus 24 le~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556667777777777777776644
No 22
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.23 E-value=2e+02 Score=27.90 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 037051 377 NTYSALASRVVEIWE 391 (492)
Q Consensus 377 ~~i~~L~~~l~~i~~ 391 (492)
..+..+++.+..+++
T Consensus 197 ~~l~~lrr~l~~lrr 211 (339)
T 4ev6_A 197 EKILGLRKTLVYFHK 211 (339)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555444443
No 23
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=32.66 E-value=1.6e+02 Score=25.34 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 372 LDTFINTYSALASRVVEIWELVTHCAS-----SEKGGFLKEM--KGLLEECKEELKLVRNDQNRTMELVKRTTK 438 (492)
Q Consensus 372 ~~~l~~~i~~L~~~l~~i~~~l~~~~~-----~e~d~f~~~m--~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~ 438 (492)
++.+..+|..+..++..++..+....- -+ .....++ +.|+...+.-+..|++.+..+.+.|.-+-.
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE-~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq 128 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE-AELDKVCEEQQFLTLQEELILDLKEDLGKALETFDLIKL 128 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665543210 00 0011111 457777777777777777777777765533
No 24
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=32.43 E-value=1.8e+02 Score=23.24 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 376 INTYSALASRVVEIWELVTHCA---SSEKGGFLKEMKGLLEECKEELKLVRNDQNRTM 430 (492)
Q Consensus 376 ~~~i~~L~~~l~~i~~~l~~~~---~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~ 430 (492)
...|..++..+.++++.|..+. ..-...+...|..=+..++.+++.|+..++++.
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666665542 111245678888888888888888887776653
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=29.74 E-value=1.9e+02 Score=26.61 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=11.0
Q ss_pred ccChHHHHHhhccc
Q 037051 141 RFDDEQIENLFGYS 154 (492)
Q Consensus 141 ~lD~~~lE~lF~~~ 154 (492)
.++.++|.++|+..
T Consensus 218 ~~~~~~l~~~F~~~ 231 (282)
T 3pgw_A 218 ETNELMLSMLFNQF 231 (282)
T ss_pred cCCHHHHHHHHHhc
Confidence 45788999999764
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.10 E-value=1.5e+02 Score=31.05 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHhc
Q 037051 426 QNRTMELVKRTTKYY 440 (492)
Q Consensus 426 ~~~~~~~~~~~~~yF 440 (492)
+.++.+.+++-..|.
T Consensus 108 ynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 27
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=27.15 E-value=1e+02 Score=26.49 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=36.0
Q ss_pred CcceeccchhhHHHHHHHHhhcCCCHHHHHHHHHhCCCCCHHHHHHHHhhCCCc
Q 037051 178 TAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQ 231 (492)
Q Consensus 178 ~~~i~lLD~kRaqNi~I~L~~lk~s~~ei~~aild~~~L~~e~l~~L~~~~Pt~ 231 (492)
...+.+|..+|.. +.++++- .+.+.+++++.+.|+.|..+.+.. .||.
T Consensus 23 ~s~~~~Lk~hRe~----LV~rl~~-v~~LLD~LL~~gvLs~EE~EiV~~-~~T~ 70 (144)
T 4e9m_A 23 HPHIQLLKSNREL----LVTHIRN-TQCLVDNLLKNDYFSAEDAEIVCA-CPTQ 70 (144)
T ss_dssp CHHHHHHHHTHHH----HHHHCCC-CHHHHHHHHHTTSSCHHHHHHHHT-SSSH
T ss_pred chHHHHHHHHHHH----HHHHHhh-hHHHHHHHHHcCCCCHHHHHHHhc-cCCh
Confidence 3467788888775 3455552 467888888899999999988766 8887
No 28
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.76 E-value=1.9e+02 Score=22.65 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037051 402 GGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYY 440 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yF 440 (492)
..|...+..|-..+..-... +..+.........-|
T Consensus 56 ~ay~~~~~~W~~~a~~l~~~----L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 56 AAYSQAHKEWMDAARELVEG----LSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 56666666666555443333 333444444443433
No 29
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=26.10 E-value=2.1e+02 Score=21.62 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037051 375 FINTYSALASRVVEIWELVTHCAS----SEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQ 441 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~~----~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFg 441 (492)
+......|...+..++..+..+.. .....|...+..|-..+..-...| ..+.........-|-
T Consensus 17 ~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L----~~i~~~l~~~~~~y~ 83 (94)
T 3fav_B 17 IQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNAL----QNLARTISEAGQAMA 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 334444555555555555555432 123677777777776665444444 334444444444443
No 30
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.61 E-value=2.9e+02 Score=22.93 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 037051 375 FINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRND 425 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~ 425 (492)
+.++|..|.+.+..++..+......++......+..=++....+|..|+..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999888776654333333333333344444555555443
No 31
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.47 E-value=2.5e+02 Score=22.16 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=37.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhc----cCC-CCchHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 037051 369 RIELDTFINTYSALASRVVEIWELVTHCA----SSE-KGGFLKEMKGLLEECKEELKL-VRNDQNRTM 430 (492)
Q Consensus 369 ~v~~~~l~~~i~~L~~~l~~i~~~l~~~~----~~e-~d~f~~~m~~Fl~~a~~~l~~-L~~~~~~~~ 430 (492)
..+-++=...|..++..+.++...|..+. +.. ...+...|..-+..++.++.. |+..++.+.
T Consensus 26 ~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 26 SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33434444455666666666666555442 110 135677888888888888888 877776654
No 32
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=25.28 E-value=1.7e+02 Score=22.90 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHH
Q 037051 416 KEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCAD 472 (492)
Q Consensus 416 ~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e 472 (492)
+.+++.|-..|..+.+...+-+-+||.- +-.+...++.+.++.|.++..+
T Consensus 7 ~aR~k~LP~dY~~ay~~i~~Yl~~~~~~-------~g~~~~~il~~lldlfEeaaa~ 56 (85)
T 2o3l_A 7 MARVAALPEDYQFVFKKIQNYMWNFSAG-------NGMDMLHIQYELIDLFEAGAAE 56 (85)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHCCS-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhCCC-------chhHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555544444444445431 2344555555666666655544
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.66 E-value=2.9e+02 Score=24.89 Aligned_cols=98 Identities=7% Similarity=0.067 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCCCh
Q 037051 375 FINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKE--KWGHP 452 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~--~~~~p 452 (492)
+..+|..+.+....++..+..... +.+.+..++.....++...+..|++....+......+..|.-+-.-.. -...-
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~-E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKY-EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444555444444444433321 224455666666666666677777777766666666666654311100 00011
Q ss_pred hchHHHHHHHHHHHHHHHHHH
Q 037051 453 LQLFVIVKEFLDMVDTVCADI 473 (492)
Q Consensus 453 ~efF~~l~~F~~~f~~a~~e~ 473 (492)
-..-..+.+|=..|.+|...+
T Consensus 126 R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 126 RATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 233455777777777777665
No 34
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=23.52 E-value=2.4e+02 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=8.2
Q ss_pred CchHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECK 416 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~ 416 (492)
..|...+..|...+.
T Consensus 52 ~af~~~~~~~~~~~~ 66 (99)
T 3zbh_A 52 EAFIQQYQELRPSFE 66 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666665554443
No 35
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=23.52 E-value=18 Score=37.94 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.9
Q ss_pred CHHHHHHHH
Q 037051 202 SQKEIIEAL 210 (492)
Q Consensus 202 s~~ei~~ai 210 (492)
+..++++..
T Consensus 224 SL~eLv~~y 232 (535)
T 2h8h_A 224 SLQQLVAYY 232 (535)
T ss_dssp SHHHHHHHH
T ss_pred ChHHhheee
Confidence 344444443
No 36
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.35 E-value=2.5e+02 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 037051 402 GGFLKEMKGLLEECKEELK 420 (492)
Q Consensus 402 d~f~~~m~~Fl~~a~~~l~ 420 (492)
+.|...+..|...+..-..
T Consensus 51 ~aF~~~~~~~~~~~~~~~~ 69 (98)
T 3gwk_C 51 DSFEAQFNELSPKITEFAQ 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677766666555443333
No 37
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=22.39 E-value=25 Score=20.70 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=11.8
Q ss_pred cccCCCcccchhhhcc
Q 037051 16 IVFNPSFEEDEEKCMD 31 (492)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (492)
+-|||||--|+..+-|
T Consensus 9 gqynpsfisddsrrrd 24 (26)
T 3u7d_B 9 GQYNPSFISDESRRRD 24 (26)
T ss_pred CccCcccccCcchhcc
Confidence 4699999888755443
No 38
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.10 E-value=3.4e+02 Score=22.53 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChh
Q 037051 374 TFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPL 453 (492)
Q Consensus 374 ~l~~~i~~L~~~l~~i~~~l~~~~~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~ 453 (492)
+|.+.++.|...+..+... +...| ..-..-.+.|...+......+..+.+....+..-= + ..
T Consensus 6 ~i~~~l~~Leae~q~L~~~-------E~qry-~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~--~--------~~ 67 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQ-------EEARF-NEERAQADAARQALAQNEQVYNELSQRAQRLQAEA--N--------TR 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T--------SC
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c--------cc
Confidence 3445555555555554332 11122 34455667788888888888888888887775511 1 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Q 037051 454 QLFVIVKEFLDMVDTVCADISRNLQK 479 (492)
Q Consensus 454 efF~~l~~F~~~f~~a~~e~~r~~~k 479 (492)
-|=..+..-+..|+...+++..+|.+
T Consensus 68 ~yk~~y~~l~k~Y~~~~keLd~~ik~ 93 (119)
T 3etw_A 68 FYKSQYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22235677778888888887665543
No 39
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=22.05 E-value=2.4e+02 Score=23.82 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037051 375 FINTYSALASRVVEIWELVTHCA-SSEKGGFLKEMKGLLEECKEELKLVRNDQNRTM 430 (492)
Q Consensus 375 l~~~i~~L~~~l~~i~~~l~~~~-~~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~ 430 (492)
|..-..+|...+.++........ .+..-.|...+++|.+.+...++........+.
T Consensus 6 L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd~~l~~w~~~a~~~I 62 (131)
T 2hfi_A 6 LLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEGALELI 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444442 333357999999999999999888776544443
No 40
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=22.02 E-value=4.5e+02 Score=23.90 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=18.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHH
Q 037051 452 PLQLFVIVKEFLDMVDTVCADISRNL 477 (492)
Q Consensus 452 p~efF~~l~~F~~~f~~a~~e~~r~~ 477 (492)
...|+.+=..|.....+.+.++.+.+
T Consensus 221 l~~f~~~Q~~f~~~~~~~~~~L~~~l 246 (251)
T 2fic_A 221 FQSIAGLEENFHKEMSKLNQNLNDVL 246 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777776655
No 41
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=21.96 E-value=2.6e+02 Score=21.06 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037051 401 KGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQA 442 (492)
Q Consensus 401 ~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgE 442 (492)
.+.|...+..|...+..-... +..+...+.....-|-+
T Consensus 48 ~~af~~~~~~~~~~~~~~~~~----L~~i~~~L~~~a~~y~~ 85 (97)
T 2vs0_A 48 FSRFEEQFQQLSPKVEKFAQL----LEEIKQQLNSTADAVQE 85 (97)
T ss_dssp THHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 366777776666555444333 34444444444444433
No 42
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.35 E-value=4.7e+02 Score=23.45 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051 419 LKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS 474 (492)
Q Consensus 419 l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~ 474 (492)
+..|+....+..+....+.+-|++..+. .-|.+|+..|...++..-
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F~~~~~e----------~dv~~Fl~~y~~~R~~yH 175 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTTRSIDSA----------DDLDQFIKNYLDIRTQYH 175 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCCH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccc----------chHHHHHHHHHHHHHHHH
Confidence 3456666777777788888888763222 237899999998888763
No 43
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=20.27 E-value=38 Score=23.01 Aligned_cols=6 Identities=33% Similarity=0.661 Sum_probs=2.5
Q ss_pred cccccc
Q 037051 112 VKLKSL 117 (492)
Q Consensus 112 ~~lk~l 117 (492)
.|||++
T Consensus 31 AKLRkV 36 (43)
T 2pbd_V 31 AKLRKV 36 (43)
T ss_dssp CCCBCC
T ss_pred hhhccc
Confidence 344443
Done!