BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037052
MATFLLLPHLHYSSPLLMNPNETTKFLKPKIRLKPHYFYLLSPPKASTLDDNDGNNGAVE
PPKPSRRGRKKKATSASSATATKKKAGRPKKTQVENGLIETKKETKELSDGVLDYDDDMD
FPFDDPPLICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVA
ISH

High Scoring Gene Products

Symbol, full name Information P value
FLN1
AT3G54090
protein from Arabidopsis thaliana 4.1e-25
FLN2
fructokinase-like 2
protein from Arabidopsis thaliana 4.0e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037052
        (183 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080270 - symbol:FLN1 "AT3G54090" species:3702...   289  4.1e-25   1
TAIR|locus:2026465 - symbol:FLN2 "fructokinase-like 2" sp...   117  4.0e-06   1


>TAIR|locus:2080270 [details] [associations]
            symbol:FLN1 "AT3G54090" species:3702 "Arabidopsis
            thaliana" [GO:0016301 "kinase activity" evidence=ISS] [GO:0016773
            "phosphotransferase activity, alcohol group as acceptor"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0009295 "nucleoid" evidence=IDA] [GO:0042644 "chloroplast
            nucleoid" evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009658
            "chloroplast organization" evidence=IMP;RCA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0042793 "transcription from plastid promoter"
            evidence=IMP;RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] [GO:0048481 "ovule
            development" evidence=RCA] InterPro:IPR002173 PROSITE:PS00583
            Pfam:PF00294 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0009658 GO:GO:0016301 eggNOG:COG0524 GO:GO:0016773
            InterPro:IPR011611 GO:GO:0042644 EMBL:AL132957 GO:GO:0042793
            EMBL:AY093161 EMBL:AY128817 IPI:IPI00545327 PIR:T47568
            RefSeq:NP_190977.1 UniGene:At.43029 ProteinModelPortal:Q9M394
            SMR:Q9M394 STRING:Q9M394 PaxDb:Q9M394 PRIDE:Q9M394
            EnsemblPlants:AT3G54090.1 GeneID:824576 KEGG:ath:AT3G54090
            TAIR:At3g54090 HOGENOM:HOG000083001 InParanoid:Q9M394 OMA:QWTIGAV
            PhylomeDB:Q9M394 ProtClustDB:PLN02543 ArrayExpress:Q9M394
            Genevestigator:Q9M394 Uniprot:Q9M394
        Length = 471

 Score = 289 (106.8 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 58/98 (59%), Positives = 65/98 (66%)

Query:    87 GRPKKTQVENGLIETKKETK-ELSDGVLXXXXXXXXXXXXXXLICCFGAVQKEFVPTVRV 145
             GR KK Q    + +   ET  EL+  +               L+CCFGAVQKEFVP VRV
Sbjct:    62 GRKKK-QTSTVIEKDNTETDPELNPELADYDDGIEFPYDDPPLVCCFGAVQKEFVPVVRV 120

Query:   146 HDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAISH 183
             HDN MHPD+YS WKM+QWDPPEF RAPGGPPSNVAISH
Sbjct:   121 HDNPMHPDMYSQWKMLQWDPPEFGRAPGGPPSNVAISH 158


>TAIR|locus:2026465 [details] [associations]
            symbol:FLN2 "fructokinase-like 2" species:3702
            "Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0016301 "kinase activity" evidence=ISS] [GO:0009295 "nucleoid"
            evidence=IDA] [GO:0042644 "chloroplast nucleoid" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
            metabolic process" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009658
            "chloroplast organization" evidence=IMP;RCA] [GO:0042793
            "transcription from plastid promoter" evidence=IMP;RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009662 "etioplast organization" evidence=IMP] Pfam:PF00294
            EMBL:CP002684 GO:GO:0009658 GO:GO:0016301 InterPro:IPR011611
            GO:GO:0042644 GO:GO:0009662 GO:GO:0042793 IPI:IPI00539210
            RefSeq:NP_177080.2 UniGene:At.48351 UniGene:At.71139
            ProteinModelPortal:F4I0K2 SMR:F4I0K2 PRIDE:F4I0K2
            EnsemblPlants:AT1G69200.1 GeneID:843251 KEGG:ath:AT1G69200
            OMA:LWHENLK Uniprot:F4I0K2
        Length = 616

 Score = 117 (46.2 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query:   128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
             L+CCFG+ Q  FVP+ R  +  +  +++   +  +W P +++RAPGG    VAI+
Sbjct:   208 LVCCFGSAQHAFVPSGRPANRLLDYELHERMRDAKWAPEKYIRAPGGCAGGVAIA 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183       130   0.00091  102 3  11 22  0.44    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  147 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.23u 0.13s 11.36t   Elapsed:  00:00:01
  Total cpu time:  11.23u 0.13s 11.36t   Elapsed:  00:00:01
  Start:  Fri May 10 20:12:01 2013   End:  Fri May 10 20:12:02 2013

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