BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037052
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M1B9|SCRK4_ARATH Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2
SV=1
Length = 326
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 125 DPPLICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
+ LI FG + +FVPTV + D P F++APGG P+NVAI+
Sbjct: 7 EKSLIVSFGEMLIDFVPTVS--------------GVSLADAPGFIKAPGGAPANVAIA 50
>sp|A2WXV8|SCRK1_ORYSI Fructokinase-1 OS=Oryza sativa subsp. indica GN=FRK1 PE=1 SV=1
Length = 323
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
L+ FG + +FVPTV + + P FV+APGG P+NVAI+
Sbjct: 7 LVVSFGEMLIDFVPTVA--------------GVSLAEAPAFVKAPGGAPANVAIA 47
>sp|Q0JGZ6|SCRK1_ORYSJ Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2
Length = 323
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
L+ FG + +FVPTV + + P FV+APGG P+NVAI+
Sbjct: 7 LVVSFGEMLIDFVPTVA--------------GVSLAEAPAFVKAPGGAPANVAIA 47
>sp|P37829|SCRK_SOLTU Fructokinase OS=Solanum tuberosum PE=2 SV=1
Length = 319
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
LI FG + +FVPTV + + P F++APGG P+NVAI+
Sbjct: 12 LIVSFGEMLIDFVPTVS--------------GVSLAEAPGFLKAPGGAPANVAIA 52
>sp|Q7XJ81|SCRK2_SOLHA Fructokinase-2 OS=Solanum habrochaites GN=FRK2 PE=2 SV=1
Length = 328
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
LI FG + +FVPTV + + P F++APGG P+NVAI+
Sbjct: 11 LIVSFGEMLIDFVPTVS--------------GVSLAEAPGFLKAPGGAPANVAIA 51
>sp|Q42896|SCRK2_SOLLC Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2
Length = 328
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
LI FG + +FVPTV + + P F++APGG P+NVAI+
Sbjct: 11 LIVSFGEMLIDFVPTVS--------------GVSLAEAPGFLKAPGGAPANVAIA 51
>sp|Q6XZ79|SCRK1_MAIZE Fructokinase-1 OS=Zea mays GN=FRK1 PE=1 SV=1
Length = 323
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
L+ FG + +FVPTV + + P F++APGG P+NVAI+
Sbjct: 7 LVVSFGEMLIDFVPTVA--------------GVSLAEAPAFLKAPGGAPANVAIA 47
>sp|Q9LNE4|SCRK3_ARATH Probable fructokinase-3 OS=Arabidopsis thaliana GN=At1g06020 PE=2
SV=1
Length = 345
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
LI FG + +FVPTV + + P F++APGG P+NVAI+
Sbjct: 10 LIVSFGEMLIDFVPTVS--------------GVSLSESPGFLKAPGGAPANVAIA 50
>sp|Q9SID0|SCRK1_ARATH Probable fructokinase-1 OS=Arabidopsis thaliana GN=At2g31390 PE=2
SV=1
Length = 325
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 125 DPPLICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAIS 182
D LI FG + +FVPT S + + P F++APGG P+NVAI+
Sbjct: 6 DKGLIVSFGEMLIDFVPT------------ESGVSLAE--APGFLKAPGGAPANVAIA 49
>sp|Q5DRB2|PCDG8_PANTR Protocadherin gamma-A8 OS=Pan troglodytes GN=PCDHGA8 PE=3 SV=1
Length = 932
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 27 LKPKIRLKPHYFYLLSPPKASTLDDNDGNNGAVEPPKPSRRGRKKKATSASSATATKKKA 86
+ P + + Y LSP +LD G+NGA+ P R ++ +A T
Sbjct: 158 VDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHLVLTASDG 217
Query: 87 GRPKKT 92
G P+++
Sbjct: 218 GEPRRS 223
>sp|A1KAG3|SYM_AZOSB Methionine--tRNA ligase OS=Azoarcus sp. (strain BH72) GN=metG PE=3
SV=1
Length = 723
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 12 YSSPLLMNPNETTKFLKPKIRLKPHYFYLLSPPKA 46
Y+ L NP KP +R HYF+ LS P+A
Sbjct: 163 YAPTELKNPYSAVSGAKPVLRTSEHYFFRLSDPRA 197
>sp|Q9Y5G5|PCDG8_HUMAN Protocadherin gamma-A8 OS=Homo sapiens GN=PCDHGA8 PE=2 SV=1
Length = 932
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 27 LKPKIRLKPHYFYLLSPPKASTLDDNDGNNGAVEPPKPSRRGRKKKATSASSATATKKKA 86
+ P + + Y LSP +LD G+NGA+ P R ++ +A T
Sbjct: 158 VDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHLVLTASDG 217
Query: 87 GRPKKT 92
G+P ++
Sbjct: 218 GKPPRS 223
>sp|Q5P239|SYM_AROAE Methionine--tRNA ligase OS=Aromatoleum aromaticum (strain EbN1)
GN=metG PE=3 SV=1
Length = 718
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 12 YSSPLLMNPNETTKFLKPKIRLKPHYFYLLSPPKA 46
Y+ L NP+ KP ++ HYF+ LS P+A
Sbjct: 163 YAPTELKNPHSAVSGAKPVLKTSEHYFFRLSDPRA 197
>sp|Q9I1V0|GLGA_PSEAE Glycogen synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=glgA PE=3 SV=1
Length = 513
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 96 NGLIETKKETKELSDGVLDYDDDMDFPFDDPPLICCFGAVQ 136
+G+++ K E ++LS G+++ DD P DP L+ CF A Q
Sbjct: 264 HGILKYKVEKRQLS-GIVNGIDDSWQPHCDPHLVACFSARQ 303
>sp|Q9Y5G4|PCDG9_HUMAN Protocadherin gamma-A9 OS=Homo sapiens GN=PCDHGA9 PE=2 SV=1
Length = 932
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 27 LKPKIRLKPHYFYLLSPPKASTLDDNDGNNGAVEPPKPSRRGRKKKATSASSATATKKKA 86
+ P + + Y LSP +L+ G+NGA+ P R ++ +A T
Sbjct: 158 IDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEATAHHLVLTASDG 217
Query: 87 GRPKKT 92
G P+++
Sbjct: 218 GEPRRS 223
>sp|Q5DRB1|PCDG9_PANTR Protocadherin gamma-A9 OS=Pan troglodytes GN=PCDHGA9 PE=3 SV=1
Length = 932
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 27 LKPKIRLKPHYFYLLSPPKASTLDDNDGNNGAVEPPKPSRRGRKKKATSASSATATKKKA 86
+ P + + Y LSP +L+ G+NGA+ P R ++ +A T
Sbjct: 158 IDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEATAHHLVLTASDG 217
Query: 87 GRPKKT 92
G P+++
Sbjct: 218 GEPRRS 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,623,544
Number of Sequences: 539616
Number of extensions: 3479487
Number of successful extensions: 9921
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 9806
Number of HSP's gapped (non-prelim): 197
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)