Query 037052
Match_columns 183
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 08:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02543 pfkB-type carbohydrat 100.0 3.3E-46 7.2E-51 336.3 7.4 175 1-183 1-182 (496)
2 PLN02967 kinase 99.9 9.5E-23 2.1E-27 188.7 1.8 70 113-183 184-253 (581)
3 KOG2855 Ribokinase [Carbohydra 97.8 1.2E-05 2.6E-10 72.0 1.9 34 118-151 1-34 (330)
4 PLN02813 pfkB-type carbohydrat 81.1 0.89 1.9E-05 40.8 1.6 50 129-183 72-136 (426)
5 PLN02379 pfkB-type carbohydrat 73.2 0.57 1.2E-05 40.8 -1.7 59 124-182 17-95 (367)
6 PF09026 CENP-B_dimeris: Centr 57.0 1.2 2.5E-05 35.2 -2.6 17 129-145 43-59 (101)
7 PRK09954 putative kinase; Prov 50.2 3.6 7.8E-05 34.9 -1.0 45 128-183 59-103 (362)
8 PLN02543 pfkB-type carbohydrat 36.1 1.3E+02 0.0028 28.4 6.7 22 17-38 25-46 (496)
9 PF14812 PBP1_TM: Transmembran 34.9 13 0.00028 28.1 0.0 7 68-74 10-16 (81)
10 KOG1307 K+-dependent Ca2+/Na+ 33.4 52 0.0011 32.6 3.7 7 139-145 412-418 (588)
11 PF15241 Cylicin_N: Cylicin N- 31.6 22 0.00047 28.5 0.8 27 53-79 23-49 (110)
12 PTZ00292 ribokinase; Provision 28.7 11 0.00025 31.0 -1.2 47 127-183 16-62 (326)
13 KOG1832 HIV-1 Vpr-binding prot 23.9 45 0.00097 35.7 1.6 7 3-9 1292-1298(1516)
14 PTZ00247 adenosine kinase; Pro 23.4 13 0.00028 31.3 -1.9 17 166-182 55-71 (345)
15 PF09026 CENP-B_dimeris: Centr 23.1 27 0.0006 27.6 0.0 6 129-134 60-65 (101)
16 KOG2023 Nuclear transport rece 20.5 50 0.0011 34.0 1.2 14 110-126 357-370 (885)
No 1
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.3e-46 Score=336.32 Aligned_cols=175 Identities=59% Similarity=0.976 Sum_probs=138.5
Q ss_pred CcccccCCCCCCCCCcCCCCCCCccc-cCCcccC--CCCccccCCC-CCCcccCCCCCCCCcc--CCCCCCccccccCCC
Q 037052 1 MATFLLLPHLHYSSPLLMNPNETTKF-LKPKIRL--KPHYFYLLSP-PKASTLDDNDGNNGAV--EPPKPSRRGRKKKAT 74 (183)
Q Consensus 1 MAsl~llp~~~~~~~~~ln~~~~~~f-~s~k~~l--kP~~~~~~~~-p~~s~~~~~~~~~g~~--~~p~PsRRGRKKk~t 74 (183)
||++||||++|+|+++++++.. +|| .+.+.+. ||+.. +.+ ++.++. ....+||++ ++|+|+|||||||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (496)
T PLN02543 1 MAPFLLLPHLHHSYSSLDRREK-TCLRSSQKTRRFPKPKAS--LHPSIKRSRP-GRCSTNGAAVPESPKPSRRGRKKKPT 76 (496)
T ss_pred CCceeecCCccchhhhhccccc-cccccccccccCCCCCcc--cCCccccCcc-cccCCCcccCCCCCCccccccccCCC
Confidence 8999999999999998777765 666 5555543 44433 333 555544 567899999 899999999999998
Q ss_pred ccccccccc-ccCCCCCcccccccccccccchhhcccCccCCCCCCCCCCCCCCeeeeecCcccccccceeccCCCCChh
Q 037052 75 SASSATATK-KKAGRPKKTQVENGLIETKKETKELSDGVLDYDDDMDFPFDDPPLICCFGAVQKEFVPTVRVHDNQMHPD 153 (183)
Q Consensus 75 s~~~~t~~~-k~s~~~~~~~~e~~~~~~~de~~~~~~~~~d~ddgidfpY~~pPLVCCFGaaq~eFVPtvRv~~~~m~~d 153 (183)
+++++.+++ +++++.++++...+.+..++. +++.+||||||||||+|||+|||||.+..+|||++|+++.+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~Ge~liDf~~~~~~~~~~~~~~ 152 (496)
T PLN02543 77 SSPPKAKTTRRRTKKTDQELDPEGAEEDQEA----AEDGEDYDDGIDFPYDDPPLVCCFGAVQKEFVPTVRVHDNQMHPD 152 (496)
T ss_pred CCCCccccccccccccccccccccccCCcch----hhccccccccccccCCCCCeEEEeChhhhhhcCCCcccccccccc
Confidence 666554433 444444444444444333332 346889999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCcccccCCCCCCCCccccC
Q 037052 154 IYSTWKMVQWDPPEFVRAPGGPPSNVAISH 183 (183)
Q Consensus 154 ~ys~wk~lqW~PpeF~RAPGg~~snVAia~ 183 (183)
|||+||||||+++.|.+.+||+++|||+++
T Consensus 153 ~~~~~~~~~~~~~~f~~~~GGa~aNVAvaL 182 (496)
T PLN02543 153 MYSQWKMLQWDPPEFARAPGGPPSNVAISH 182 (496)
T ss_pred cccccccccccCCeeEeccCcHHHHHHHHH
Confidence 999999999999999999999999999874
No 2
>PLN02967 kinase
Probab=99.85 E-value=9.5e-23 Score=188.72 Aligned_cols=70 Identities=41% Similarity=0.778 Sum_probs=66.1
Q ss_pred cCCCCCCCCCCCCCCeeeeecCcccccccceeccCCCCChhhhhhhhhcccCCcccccCCCCCCCCccccC
Q 037052 113 LDYDDDMDFPFDDPPLICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAISH 183 (183)
Q Consensus 113 ~d~ddgidfpY~~pPLVCCFGaaq~eFVPtvRv~~~~m~~d~ys~wk~lqW~PpeF~RAPGg~~snVAia~ 183 (183)
+|++| |+|+|+|||+|||||.++++|+|.+|+.+++|+++||++|+|++|+|..|.+.+||+++|||+++
T Consensus 184 ~~~~~-~~~~~~~~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaL 253 (581)
T PLN02967 184 DDGED-ISHTYGWPPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIAL 253 (581)
T ss_pred ccccc-ccCcCCCCCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHH
Confidence 34455 99999999999999999999999999999999999999999999999999999999999999864
No 3
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=1.2e-05 Score=72.01 Aligned_cols=34 Identities=29% Similarity=0.634 Sum_probs=32.4
Q ss_pred CCCCCCCCCCeeeeecCcccccccceeccCCCCC
Q 037052 118 DMDFPFDDPPLICCFGAVQKEFVPTVRVHDNQMH 151 (183)
Q Consensus 118 gidfpY~~pPLVCCFGaaq~eFVPtvRv~~~~m~ 151 (183)
|+++.|+|||+|||||..+.+|||++|...+.++
T Consensus 1 ~~~~~~~~~~~vv~fGs~~~D~V~~~~~~p~~ge 34 (330)
T KOG2855|consen 1 GISAVYGEPPLVVVFGSMLIDFVPSTRRLPNAGE 34 (330)
T ss_pred CccccccCCceEEEeccceeeeeeccccCCCccc
Confidence 4789999999999999999999999999999998
No 4
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=81.09 E-value=0.89 Score=40.79 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=32.0
Q ss_pred eeeecCccccccccee-----------ccCCCCChh----hhhhhhhcccCCcccccCCCCCCCCccccC
Q 037052 129 ICCFGAVQKEFVPTVR-----------VHDNQMHPD----IYSTWKMVQWDPPEFVRAPGGPPSNVAISH 183 (183)
Q Consensus 129 VCCFGaaq~eFVPtvR-----------v~~~~m~~d----~ys~wk~lqW~PpeF~RAPGg~~snVAia~ 183 (183)
|+|+|.+--+++=.|- .....++.+ +|++... ..|.+.+||...|+|+++
T Consensus 72 vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~-----~~~~~~~GG~~~N~Aval 136 (426)
T PLN02813 72 VLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG-----CSYKASAGGSLSNTLVAL 136 (426)
T ss_pred EEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc-----cCceEecCcHHHHHHHHH
Confidence 9999999887743221 011233333 4455432 458899999999999863
No 5
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=73.25 E-value=0.57 Score=40.80 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCCCeeeeec-Cc--------ccccccceec---cCCCCChh----hhhhhhhcc----cCCcccccCCCCCCCCcccc
Q 037052 124 DDPPLICCFG-AV--------QKEFVPTVRV---HDNQMHPD----IYSTWKMVQ----WDPPEFVRAPGGPPSNVAIS 182 (183)
Q Consensus 124 ~~pPLVCCFG-aa--------q~eFVPtvRv---~~~~m~~d----~ys~wk~lq----W~PpeF~RAPGg~~snVAia 182 (183)
..||-|.|+| -| -.+|+=..-+ .+.+|+.| ||+++.... =++..+.+.+||++.|+|++
T Consensus 17 ~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~ 95 (367)
T PLN02379 17 PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRG 95 (367)
T ss_pred CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHH
Confidence 4589999999 43 3345433322 34455554 566665422 11345888999999999975
No 6
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=57.04 E-value=1.2 Score=35.16 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=9.9
Q ss_pred eeeecCcccccccceec
Q 037052 129 ICCFGAVQKEFVPTVRV 145 (183)
Q Consensus 129 VCCFGaaq~eFVPtvRv 145 (183)
||-||.+.-.|-+.-|.
T Consensus 43 ~p~fgea~~~~~~v~rY 59 (101)
T PF09026_consen 43 VPEFGEAMAYFTMVKRY 59 (101)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred chhHHHHHhhcchHhhh
Confidence 78899887777665554
No 7
>PRK09954 putative kinase; Provisional
Probab=50.18 E-value=3.6 Score=34.92 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=29.8
Q ss_pred eeeeecCcccccccceeccCCCCChhhhhhhhhcccCCcccccCCCCCCCCccccC
Q 037052 128 LICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAISH 183 (183)
Q Consensus 128 LVCCFGaaq~eFVPtvRv~~~~m~~d~ys~wk~lqW~PpeF~RAPGg~~snVAia~ 183 (183)
-|-|+|.+--+.+ +++..+....+ + .+.++...+||.+.|||+++
T Consensus 59 ~v~viG~~~vD~~--~~~~~~~p~~~---~------~~~~~~~~~GG~~~NvA~~l 103 (362)
T PRK09954 59 YCVVVGAINMDIR--GMADIRYPQAA---S------HPGTIHCSAGGVGRNIAHNL 103 (362)
T ss_pred cEEEEEEEEEEEE--EeeCCcCcCCC---C------CCceEEEecCcHHHHHHHHH
Confidence 4558999999986 34421211111 1 35678889999999999863
No 8
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=36.08 E-value=1.3e+02 Score=28.44 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=15.1
Q ss_pred CCCCCCCccccCCcccCCCCcc
Q 037052 17 LMNPNETTKFLKPKIRLKPHYF 38 (183)
Q Consensus 17 ~ln~~~~~~f~s~k~~lkP~~~ 38 (183)
++.++.+..|..|+++++|...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~ 46 (496)
T PLN02543 25 LRSSQKTRRFPKPKASLHPSIK 46 (496)
T ss_pred cccccccccCCCCCcccCCccc
Confidence 5666677777777777766555
No 9
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=34.95 E-value=13 Score=28.11 Aligned_cols=7 Identities=57% Similarity=0.843 Sum_probs=0.0
Q ss_pred ccccCCC
Q 037052 68 GRKKKAT 74 (183)
Q Consensus 68 GRKKk~t 74 (183)
|||.|+.
T Consensus 10 GRkgk~~ 16 (81)
T PF14812_consen 10 GRKGKKS 16 (81)
T ss_dssp -------
T ss_pred CcCCCCC
Confidence 6776654
No 10
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.37 E-value=52 Score=32.58 Aligned_cols=7 Identities=57% Similarity=0.724 Sum_probs=4.0
Q ss_pred cccceec
Q 037052 139 FVPTVRV 145 (183)
Q Consensus 139 FVPtvRv 145 (183)
=||.||-
T Consensus 412 TvPdvrk 418 (588)
T KOG1307|consen 412 TVPDVRK 418 (588)
T ss_pred ecCCcCC
Confidence 3666663
No 11
>PF15241 Cylicin_N: Cylicin N-terminus
Probab=31.61 E-value=22 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCCCCccCCCCCCccccccCCCccccc
Q 037052 53 DGNNGAVEPPKPSRRGRKKKATSASSA 79 (183)
Q Consensus 53 ~~~~g~~~~p~PsRRGRKKk~ts~~~~ 79 (183)
+-.|=+++=|||-|.|||++...+..|
T Consensus 23 NQqhFaLtFPKPprPG~K~RS~PSelq 49 (110)
T PF15241_consen 23 NQQHFALTFPKPPRPGKKRRSRPSELQ 49 (110)
T ss_pred hhhheeeccCCCCCCCCCCCCCchHhc
Confidence 456778999999999999998755555
No 12
>PTZ00292 ribokinase; Provisional
Probab=28.70 E-value=11 Score=30.96 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred CeeeeecCcccccccceeccCCCCChhhhhhhhhcccCCcccccCCCCCCCCccccC
Q 037052 127 PLICCFGAVQKEFVPTVRVHDNQMHPDIYSTWKMVQWDPPEFVRAPGGPPSNVAISH 183 (183)
Q Consensus 127 PLVCCFGaaq~eFVPtvRv~~~~m~~d~ys~wk~lqW~PpeF~RAPGg~~snVAia~ 183 (183)
+=|.|+|.+--+++..+. ++..++ + + ..=.+|...+||.+.|||+++
T Consensus 16 ~~vlviG~~~vD~~~~~~---~~~~~~--~-~----~~~~~~~~~~GG~~~NvA~~l 62 (326)
T PTZ00292 16 PDVVVVGSSNTDLIGYVD---RMPQVG--E-T----LHGTSFHKGFGGKGANQAVMA 62 (326)
T ss_pred CCEEEEccceeeEEEecC---CCCCCC--C-c----eeecCceeCCCCcHHHHHHHH
Confidence 348899999999987653 211111 1 1 112467788999999999863
No 13
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.88 E-value=45 Score=35.71 Aligned_cols=7 Identities=57% Similarity=0.672 Sum_probs=2.8
Q ss_pred ccccCCC
Q 037052 3 TFLLLPH 9 (183)
Q Consensus 3 sl~llp~ 9 (183)
+|++|++
T Consensus 1292 TF~lLh~ 1298 (1516)
T KOG1832|consen 1292 TFKLLHS 1298 (1516)
T ss_pred HHHHHhc
Confidence 3444433
No 14
>PTZ00247 adenosine kinase; Provisional
Probab=23.36 E-value=13 Score=31.32 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.3
Q ss_pred cccccCCCCCCCCcccc
Q 037052 166 PEFVRAPGGPPSNVAIS 182 (183)
Q Consensus 166 peF~RAPGg~~snVAia 182 (183)
.++...+||.+.|||++
T Consensus 55 ~~~~~~~GG~~~N~A~~ 71 (345)
T PTZ00247 55 PNVSYVPGGSALNTARV 71 (345)
T ss_pred cCceecCCCHHHHHHHH
Confidence 45778899999999975
No 15
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=23.13 E-value=27 Score=27.63 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.7
Q ss_pred eeeecC
Q 037052 129 ICCFGA 134 (183)
Q Consensus 129 VCCFGa 134 (183)
+|||-.
T Consensus 60 ltSf~i 65 (101)
T PF09026_consen 60 LTSFPI 65 (101)
T ss_dssp HCTS--
T ss_pred hhccch
Confidence 666643
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.54 E-value=50 Score=34.01 Aligned_cols=14 Identities=36% Similarity=0.254 Sum_probs=7.5
Q ss_pred cCccCCCCCCCCCCCCC
Q 037052 110 DGVLDYDDDMDFPFDDP 126 (183)
Q Consensus 110 ~~~~d~ddgidfpY~~p 126 (183)
|+++|.||+.. +|.
T Consensus 357 dDe~DDdD~~~---dWN 370 (885)
T KOG2023|consen 357 DDEDDDDDAFS---DWN 370 (885)
T ss_pred ccccccccccc---ccc
Confidence 34455555555 665
Done!