BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037054
         (508 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5RD88|KDM4A_PONAB Lysine-specific demethylase 4A OS=Pongo abelii GN=KDM4A PE=2 SV=1
          Length = 1064

 Score = 34.3 bits (77), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 12/66 (18%)

Query: 430 TDPTPEHCPPGEFIREIPLPNR------IPEDAKLEAYRDETGAMLEIIVPKHRVGPEEH 483
           T PTPE     EF++E  LP R       PED  +E   D     L+  + KHR+G + H
Sbjct: 344 TLPTPE---AAEFLKESELPPRAGNEEECPED-DMEGVEDGEEGDLKTSLAKHRIGTKRH 399

Query: 484 EVRVCL 489
             RVCL
Sbjct: 400 --RVCL 403


>sp|Q60348|Y043_METJA Uncharacterized protein MJ0043 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ0043 PE=4 SV=1
          Length = 785

 Score = 32.7 bits (73), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 319 DNFLRAID---GDSCLPHNSHSERVLDMKLQIVEPPWIYEFSGVMKNVFGPVTAAKTIYE 375
           + F R +D   GD  L H +  ++V  +                 +   G +   K  Y 
Sbjct: 140 NGFKRIVDIKVGDKVLTHENRFKKVEKV---------------YKRRYIGDIIKIKVRYF 184

Query: 376 DDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPE 435
            +E    II  P   +  +K   R   +HGI K +C++    P  K++ R +K      +
Sbjct: 185 PEE----IILTPEHPVYAIKTEKRCDGSHGICKFNCLTQYTNPSCKKRYRKYKREWIIAK 240

Query: 436 HCPPGEFIREIPLPNRI 452
               G+ I   P+PNR+
Sbjct: 241 DLKVGDVI-VYPIPNRV 256


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,940,019
Number of Sequences: 539616
Number of extensions: 9316880
Number of successful extensions: 16841
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 16841
Number of HSP's gapped (non-prelim): 6
length of query: 508
length of database: 191,569,459
effective HSP length: 122
effective length of query: 386
effective length of database: 125,736,307
effective search space: 48534214502
effective search space used: 48534214502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)