Query 037054
Match_columns 508
No_of_seqs 33 out of 35
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 08:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06464 ACD_sHsps-like Alpha-c 99.2 4.7E-11 1E-15 92.7 6.3 87 372-475 1-88 (88)
2 PF00011 HSP20: Hsp20/alpha cr 99.1 8.5E-10 1.9E-14 90.0 12.0 96 372-485 1-97 (102)
3 cd06472 ACD_ScHsp26_like Alpha 99.1 6.2E-10 1.3E-14 91.1 9.2 91 370-475 1-92 (92)
4 cd06471 ACD_LpsHSP_like Group 99.0 1.6E-09 3.5E-14 88.2 9.3 91 370-475 2-93 (93)
5 cd06497 ACD_alphaA-crystallin_ 98.9 1.7E-08 3.8E-13 83.3 9.6 82 372-475 4-86 (86)
6 PRK10743 heat shock protein Ib 98.7 5.6E-08 1.2E-12 87.1 9.7 88 370-476 36-124 (137)
7 cd06475 ACD_HspB1_like Alpha c 98.7 5.2E-08 1.1E-12 80.5 8.7 84 369-474 1-85 (86)
8 PRK11597 heat shock chaperone 98.7 1.5E-07 3.2E-12 85.3 12.1 107 368-493 32-140 (142)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 98.7 8.4E-08 1.8E-12 78.5 9.5 81 373-475 2-83 (83)
10 cd06470 ACD_IbpA-B_like Alpha- 98.7 9.7E-08 2.1E-12 78.6 9.1 88 370-475 2-90 (90)
11 cd06498 ACD_alphaB-crystallin_ 98.6 1.8E-07 3.9E-12 77.2 9.3 82 373-476 2-84 (84)
12 cd06526 metazoan_ACD Alpha-cry 98.6 2.8E-07 6E-12 74.4 7.7 78 376-475 5-83 (83)
13 COG0071 IbpA Molecular chapero 98.5 1.3E-06 2.8E-11 77.4 11.5 91 368-478 40-135 (146)
14 cd06476 ACD_HspB2_like Alpha c 98.5 7E-07 1.5E-11 73.8 8.8 79 375-475 4-83 (83)
15 cd06479 ACD_HspB7_like Alpha c 98.5 5.5E-07 1.2E-11 74.5 7.2 79 372-475 2-81 (81)
16 cd06477 ACD_HspB3_Like Alpha c 98.3 2.7E-06 5.8E-11 70.9 8.4 77 375-473 4-81 (83)
17 cd06482 ACD_HspB10 Alpha cryst 98.3 1.5E-06 3.2E-11 73.1 6.8 79 376-473 6-85 (87)
18 cd06481 ACD_HspB9_like Alpha c 98.3 4.9E-06 1.1E-10 69.0 8.3 83 375-475 4-87 (87)
19 cd00298 ACD_sHsps_p23-like Thi 98.2 5.7E-06 1.2E-10 60.9 7.6 79 373-475 1-80 (80)
20 cd06480 ACD_HspB8_like Alpha-c 97.2 0.0014 3.1E-08 55.9 7.5 88 365-474 2-90 (91)
21 cd06469 p23_DYX1C1_like p23_li 96.4 0.021 4.6E-07 44.6 8.0 68 374-477 2-70 (78)
22 KOG0710 Molecular chaperone (s 95.4 0.042 9.2E-07 52.0 6.8 91 370-479 86-183 (196)
23 cd06463 p23_like Proteins cont 94.9 0.24 5.1E-06 37.8 8.5 74 374-478 2-76 (84)
24 cd06466 p23_CS_SGT1_like p23_l 89.7 1.5 3.3E-05 34.5 6.6 75 373-477 2-76 (84)
25 KOG3591 Alpha crystallins [Pos 88.5 4.7 0.0001 38.3 10.2 100 366-490 60-164 (173)
26 KOG4680 Uncharacterized conser 59.4 17 0.00038 34.7 4.9 46 419-466 81-132 (153)
27 PF08190 PIH1: pre-RNA process 47.4 1.2E+02 0.0027 29.7 8.8 32 441-474 295-327 (328)
28 PF10123 Mu-like_Pro: Mu-like 43.2 27 0.00058 35.4 3.7 44 200-243 92-163 (326)
29 PF02911 Formyl_trans_C: Formy 34.9 63 0.0014 26.3 4.0 55 362-420 23-90 (100)
30 PF05455 GvpH: GvpH; InterPro 29.6 1.4E+02 0.003 29.3 5.9 74 369-476 92-168 (177)
31 PF06554 Olfactory_mark: Olfac 27.6 1E+02 0.0023 29.5 4.6 54 385-446 44-99 (151)
32 cd08869 START_RhoGAP C-termina 27.0 2.4E+02 0.0052 26.5 6.9 45 387-450 99-145 (197)
33 KOG2104 Nuclear transport fact 24.5 1E+02 0.0022 29.0 3.9 56 384-444 56-114 (126)
34 PRK08760 replicative DNA helic 23.9 1.2E+02 0.0025 32.8 4.8 54 448-506 407-471 (476)
35 PF06573 Churchill: Churchill 23.7 1.1E+02 0.0024 28.2 3.9 49 406-459 54-108 (112)
36 cd02859 AMPKbeta_GBD_like AMP- 22.8 3.5E+02 0.0075 22.1 6.3 69 392-467 2-73 (79)
37 COG1127 Ttg2A ABC-type transpo 21.1 67 0.0015 33.2 2.2 53 137-192 193-259 (263)
38 PRK05636 replicative DNA helic 20.1 90 0.0019 34.1 3.1 41 449-491 444-494 (505)
No 1
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.18 E-value=4.7e-11 Score=92.69 Aligned_cols=87 Identities=24% Similarity=0.416 Sum_probs=74.8
Q ss_pred EEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCC
Q 037054 372 TIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNR 451 (508)
Q Consensus 372 ~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~r 451 (508)
+|+|++++|.+.+.|||++.+.++|++.+ +.+.|+|-.+....... ......|..|+|.|+|+||.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~----~~l~I~g~~~~~~~~~~---------~~~~~~~~~~~f~r~~~LP~- 66 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED----GVLTISGEREEEEEEEE---------NYLRRERSYGSFSRSFRLPE- 66 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC----CEEEEEEEEecccccCC---------cEEEEEEeCcEEEEEEECCC-
Confidence 58999999999999999999999999994 89999998886655543 12445678899999999999
Q ss_pred CCCCcc-cccccCCCCceEEEEeec
Q 037054 452 IPEDAK-LEAYRDETGAMLEIIVPK 475 (508)
Q Consensus 452 iPeDa~-leayfd~~G~iLEiiVpK 475 (508)
+.|+. ++|.|+. | +|+|.+||
T Consensus 67 -~vd~~~i~a~~~~-G-~L~I~~pk 88 (88)
T cd06464 67 -DVDPDKIKASLEN-G-VLTITLPK 88 (88)
T ss_pred -CcCHHHcEEEEeC-C-EEEEEEcC
Confidence 78886 4999998 9 99999998
No 2
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.13 E-value=8.5e-10 Score=89.99 Aligned_cols=96 Identities=26% Similarity=0.392 Sum_probs=73.7
Q ss_pred EEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCC
Q 037054 372 TIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNR 451 (508)
Q Consensus 372 ~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~r 451 (508)
||+|+++.|++.+.|||++.+.++++.. ++.+.|+|-.+ .....++.+... ...|.|.|+|+||.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~----~~~L~I~g~~~----~~~~~~~~~~~~------~~~~~f~r~~~lP~- 65 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVD----DNKLVISGKRK----EEEEDDRYYRSE------RRYGSFERSIRLPE- 65 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEE----TTEEEEEEEEE----GEECTTCEEEE-------S-SEEEEEEEE-ST-
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEe----cCccceeceee----eeeeeeeeeecc------cccceEEEEEcCCC-
Confidence 7999999999999999999999999987 67899999877 333334443322 56899999999999
Q ss_pred CCCCccc-ccccCCCCceEEEEeecCCCCCCceeE
Q 037054 452 IPEDAKL-EAYRDETGAMLEIIVPKHRVGPEEHEV 485 (508)
Q Consensus 452 iPeDa~l-eayfd~~G~iLEiiVpK~r~g~eehev 485 (508)
++|+.- +|.| ++| +|.|.+||.......+..
T Consensus 66 -~vd~~~i~a~~-~~G-vL~I~~pk~~~~~~~~~~ 97 (102)
T PF00011_consen 66 -DVDPDKIKASY-ENG-VLTITIPKKEEEEDSQPK 97 (102)
T ss_dssp -TB-GGG-EEEE-TTS-EEEEEEEBSSSCTTSSSC
T ss_pred -cCCcceEEEEe-cCC-EEEEEEEccccccCCCCe
Confidence 889877 9999 999 999999999776543333
No 3
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.08 E-value=6.2e-10 Score=91.05 Aligned_cols=91 Identities=24% Similarity=0.370 Sum_probs=70.0
Q ss_pred eEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCC
Q 037054 370 AKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLP 449 (508)
Q Consensus 370 ak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp 449 (508)
++||+|.+++|.+.+.||||+++.++++.. .++.+.|+|-.+.-. -...++..... ..-|.|.|+|+||
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~---~~~~L~I~g~~~~~~--~~~~~~~~~~e------~~~g~f~r~i~LP 69 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVE---DGRVLRISGERKKEE--EKKGDDWHRVE------RSSGRFVRRFRLP 69 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEe---CCCEEEEEEEecccc--cccCCCEEEEE------EeccEEEEEEECC
Confidence 379999999999999999999999999765 236899999764211 11122222221 2569999999999
Q ss_pred CCCCCCccc-ccccCCCCceEEEEeec
Q 037054 450 NRIPEDAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 450 ~riPeDa~l-eayfd~~G~iLEiiVpK 475 (508)
. ++|+.- +|.|+ +| ||+|.+||
T Consensus 70 ~--~v~~~~i~A~~~-nG-vL~I~lPK 92 (92)
T cd06472 70 E--NADADEVKAFLE-NG-VLTVTVPK 92 (92)
T ss_pred C--CCCHHHCEEEEE-CC-EEEEEecC
Confidence 9 888875 99996 79 99999998
No 4
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.03 E-value=1.6e-09 Score=88.17 Aligned_cols=91 Identities=24% Similarity=0.413 Sum_probs=68.9
Q ss_pred eEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCC
Q 037054 370 AKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLP 449 (508)
Q Consensus 370 ak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp 449 (508)
++||+|++++|.+.+.||||+++.++|... ++.+.|+|-.+....--....+... . -..-|.|.|.|+||
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~----~~~L~I~g~~~~~~~~~~~~~~~~~-~-----e~~~g~f~r~~~lp 71 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYK----DGYLTISAKRDESKDEKDKKGNYIR-R-----ERYYGSFSRSFYLP 71 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEccccccccccCCEEE-E-----eeeccEEEEEEECC
Confidence 579999999999999999999999999876 5799999977632111001111111 1 12569999999999
Q ss_pred CCCCCCcc-cccccCCCCceEEEEeec
Q 037054 450 NRIPEDAK-LEAYRDETGAMLEIIVPK 475 (508)
Q Consensus 450 ~riPeDa~-leayfd~~G~iLEiiVpK 475 (508)
. +|+. ++|.| .+| ||+|.+||
T Consensus 72 ~---v~~~~i~A~~-~dG-vL~I~lPK 93 (93)
T cd06471 72 N---VDEEEIKAKY-ENG-VLKITLPK 93 (93)
T ss_pred C---CCHHHCEEEE-ECC-EEEEEEcC
Confidence 4 5664 59999 899 99999998
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=98.86 E-value=1.7e-08 Score=83.34 Aligned_cols=82 Identities=22% Similarity=0.322 Sum_probs=67.6
Q ss_pred EEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCC
Q 037054 372 TIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNR 451 (508)
Q Consensus 372 ~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~r 451 (508)
.|+|++++|.+.+-|||++.+.++|+-. +|.+.|+|-.... ..+..|... +|.|+|.||.
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~-----~~~~~~~~~----------ef~R~~~LP~- 63 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL----DDYVEIHGKHSER-----QDDHGYISR----------EFHRRYRLPS- 63 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcce-----eCCCCEEEE----------EEEEEEECCC-
Confidence 7999999999999999999999999877 7899999964311 111222222 5999999999
Q ss_pred CCCCccc-ccccCCCCceEEEEeec
Q 037054 452 IPEDAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 452 iPeDa~l-eayfd~~G~iLEiiVpK 475 (508)
.+|+.- +|.|..+| ||.|-+||
T Consensus 64 -~Vd~~~i~A~~~~dG-vL~I~~PK 86 (86)
T cd06497 64 -NVDQSAITCSLSADG-MLTFSGPK 86 (86)
T ss_pred -CCChHHeEEEeCCCC-EEEEEecC
Confidence 899887 99999999 99999998
No 6
>PRK10743 heat shock protein IbpA; Provisional
Probab=98.74 E-value=5.6e-08 Score=87.12 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred eEEEE-ecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeC
Q 037054 370 AKTIY-EDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPL 448 (508)
Q Consensus 370 ak~Iy-Ede~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~L 448 (508)
++||+ |++++|.+.+.||||+++.++|+-. +|.+.|+|-...- ..+..|... -..-|.|.|+|.|
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~----~~~LtI~ge~~~~-----~~~~~~~~~-----Er~~g~F~R~~~L 101 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQ----DNLLVVKGAHADE-----QKERTYLYQ-----GIAERNFERKFQL 101 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEECcc-----ccCCcEEEE-----EEECCEEEEEEEC
Confidence 48999 4999999999999999999999887 7899999975421 111222222 1356899999999
Q ss_pred CCCCCCCcccccccCCCCceEEEEeecC
Q 037054 449 PNRIPEDAKLEAYRDETGAMLEIIVPKH 476 (508)
Q Consensus 449 p~riPeDa~leayfd~~G~iLEiiVpK~ 476 (508)
|. ++|+. +|.| .+| ||+|-+||.
T Consensus 102 P~--~Vd~~-~A~~-~dG-VL~I~lPK~ 124 (137)
T PRK10743 102 AE--NIHVR-GANL-VNG-LLYIDLERV 124 (137)
T ss_pred CC--CcccC-cCEE-eCC-EEEEEEeCC
Confidence 99 77777 5887 489 999999996
No 7
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.74 E-value=5.2e-08 Score=80.51 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=68.6
Q ss_pred eeEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeC
Q 037054 369 AAKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPL 448 (508)
Q Consensus 369 gak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~L 448 (508)
|+-+|+|++++|.+.+-|||++++.++|+=. ++.+.|+|-...-. .+..|. | ++|.|+|+|
T Consensus 1 ~~~~i~e~~~~~~v~~dlPG~~~edi~V~v~----~~~L~I~g~~~~~~-----~~~~~~--------~--~~f~R~f~L 61 (86)
T cd06475 1 GMSEIRQTADRWKVSLDVNHFAPEELVVKTK----DGVVEITGKHEEKQ-----DEHGFV--------S--RCFTRKYTL 61 (86)
T ss_pred CcceEEEcCCeEEEEEECCCCCHHHEEEEEE----CCEEEEEEEECcCc-----CCCCEE--------E--EEEEEEEEC
Confidence 5779999999999999999999999999876 57999999754211 111121 1 389999999
Q ss_pred CCCCCCCccc-ccccCCCCceEEEEee
Q 037054 449 PNRIPEDAKL-EAYRDETGAMLEIIVP 474 (508)
Q Consensus 449 p~riPeDa~l-eayfd~~G~iLEiiVp 474 (508)
|. ++|+.- +|.|..+| ||.|.+|
T Consensus 62 P~--~vd~~~v~A~~~~dG-vL~I~lP 85 (86)
T cd06475 62 PP--GVDPTAVTSSLSPDG-ILTVEAP 85 (86)
T ss_pred CC--CCCHHHcEEEECCCC-eEEEEec
Confidence 99 899877 99999999 9999886
No 8
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=98.73 E-value=1.5e-07 Score=85.33 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=78.2
Q ss_pred eeeEEEEe-cCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEe
Q 037054 368 TAAKTIYE-DDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREI 446 (508)
Q Consensus 368 tgak~IyE-de~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei 446 (508)
.-++||+| ++++|.|.+.||||+++.++|+=. +|.+.|+|-...- ....+ |.-. |. .-|.|.|+|
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~----~~~LtI~ge~~~~----~~~~~-~~~~----Er-~~g~F~R~f 97 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE----GTRLTVKGTPEQP----EKEVK-WLHQ----GL-VNQPFSLSF 97 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE----CCEEEEEEEEccc----cCCCc-EEEE----EE-eCcEEEEEE
Confidence 34689998 688999999999999999999765 8899999975321 11112 2211 11 348999999
Q ss_pred eCCCCCCCCcccccccCCCCceEEEEeecCC-CCCCceeEEEEecCCC
Q 037054 447 PLPNRIPEDAKLEAYRDETGAMLEIIVPKHR-VGPEEHEVRVCLRPSP 493 (508)
Q Consensus 447 ~Lp~riPeDa~leayfd~~G~iLEiiVpK~r-~g~eehev~v~lrp~~ 493 (508)
.||. .+|+. +|.|+ +| ||+|.+||.- ....-+-+.|--||.+
T Consensus 98 ~LP~--~vd~~-~A~~~-nG-VL~I~lPK~~~~~~~~rkI~I~~~~~~ 140 (142)
T PRK11597 98 TLAE--NMEVS-GATFV-NG-LLHIDLIRNEPEAIAPQRIAISERPAL 140 (142)
T ss_pred ECCC--CcccC-cCEEc-CC-EEEEEEeccCccccCCcEEEECCcccc
Confidence 9999 66776 78885 89 9999999963 2233466777777754
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=98.73 E-value=8.4e-08 Score=78.54 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=65.4
Q ss_pred EEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCC
Q 037054 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRI 452 (508)
Q Consensus 373 IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~ri 452 (508)
|.+++++|.+.+-|||++.+.++|+=. +|.+.|+|-... +..+..|... +|.|+|+||.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~----~~~L~I~g~~~~-----~~~~~~~~~~----------ef~R~~~LP~-- 60 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVL----GDFVEIHGKHEE-----RQDEHGFISR----------EFHRRYRLPP-- 60 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEce-----EcCCCCEEEE----------EEEEEEECCC--
Confidence 789999999999999999999999866 689999995431 1111122211 5999999999
Q ss_pred CCCccc-ccccCCCCceEEEEeec
Q 037054 453 PEDAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 453 PeDa~l-eayfd~~G~iLEiiVpK 475 (508)
.+|+.- +|.|..+| ||.|-+||
T Consensus 61 ~vd~~~i~A~~~~dG-vL~I~~PK 83 (83)
T cd06478 61 GVDPAAITSSLSADG-VLTISGPR 83 (83)
T ss_pred CcChHHeEEEECCCC-EEEEEecC
Confidence 888877 99999999 99999998
No 10
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=98.70 E-value=9.7e-08 Score=78.60 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=68.8
Q ss_pred eEEEEec-CceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeC
Q 037054 370 AKTIYED-DEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPL 448 (508)
Q Consensus 370 ak~IyEd-e~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~L 448 (508)
++||+|+ +++|.+.+.|||++++.++|+.. ++.+.|+|-...... .++.|... -..-|.|.|.|.|
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~~~----~~~L~I~g~~~~~~~----~~~~~~~~-----e~~~g~f~R~~~L 68 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIEVE----NNQLTVTGKKADEEN----EEREYLHR-----GIAKRAFERSFNL 68 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEccccc----CCCcEEEE-----EEeceEEEEEEEC
Confidence 4799996 59999999999999999999987 679999998765443 23333332 2346999999999
Q ss_pred CCCCCCCcccccccCCCCceEEEEeec
Q 037054 449 PNRIPEDAKLEAYRDETGAMLEIIVPK 475 (508)
Q Consensus 449 p~riPeDa~leayfd~~G~iLEiiVpK 475 (508)
|. ++|.. +|.| ++| ||.|.+++
T Consensus 69 P~--~vd~~-~A~~-~~G-vL~I~l~~ 90 (90)
T cd06470 69 AD--HVKVK-GAEL-ENG-LLTIDLER 90 (90)
T ss_pred CC--CceEC-eeEE-eCC-EEEEEEEC
Confidence 99 66764 7877 478 89998865
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=98.65 E-value=1.8e-07 Score=77.23 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=66.2
Q ss_pred EEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCC
Q 037054 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRI 452 (508)
Q Consensus 373 IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~ri 452 (508)
+++++++|.+.+-|||++.+.++|+-. ++.+.|+|-.... ..+..|.. ++|.|+|.||.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~-----~~~~~~~~----------~eF~R~~~LP~-- 60 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL----GDFIEIHGKHEER-----QDEHGFIS----------REFQRKYRIPA-- 60 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcce-----eCCCCEEE----------EEEEEEEECCC--
Confidence 578899999999999999999999876 7899999953211 11112211 36999999999
Q ss_pred CCCccc-ccccCCCCceEEEEeecC
Q 037054 453 PEDAKL-EAYRDETGAMLEIIVPKH 476 (508)
Q Consensus 453 PeDa~l-eayfd~~G~iLEiiVpK~ 476 (508)
.+|+.- +|.|..+| ||.|-+||.
T Consensus 61 ~vd~~~i~A~~~~dG-vL~I~lPk~ 84 (84)
T cd06498 61 DVDPLTITSSLSPDG-VLTVCGPRK 84 (84)
T ss_pred CCChHHcEEEeCCCC-EEEEEEeCC
Confidence 899987 99999999 999999983
No 12
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.55 E-value=2.8e-07 Score=74.41 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=64.5
Q ss_pred cCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCCCC
Q 037054 376 DDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPED 455 (508)
Q Consensus 376 de~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riPeD 455 (508)
+.++|.+.+-|||++.+.++|+-+ ++.+.|+|-...... +..+. -|+|.|+|+||. .+|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~----~~~L~I~g~~~~~~~-----~~~~~----------~~~f~r~~~LP~--~vd 63 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVS----DNKLVVEGKHEERED-----EHGYV----------SREFTRRYQLPE--GVD 63 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEE----CCEEEEEEEEeeecc-----CCCEE----------EEEEEEEEECCC--CCC
Confidence 346999999999999999999887 489999998764332 11121 289999999999 899
Q ss_pred ccc-ccccCCCCceEEEEeec
Q 037054 456 AKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 456 a~l-eayfd~~G~iLEiiVpK 475 (508)
+.- +|.|..+| ||+|-+||
T Consensus 64 ~~~i~A~~~~~G-vL~I~~Pk 83 (83)
T cd06526 64 PDSVTSSLSSDG-VLTIEAPK 83 (83)
T ss_pred hHHeEEEeCCCc-EEEEEecC
Confidence 976 99999999 99999998
No 13
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-06 Score=77.42 Aligned_cols=91 Identities=25% Similarity=0.377 Sum_probs=73.8
Q ss_pred eeeEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecC----CcceeeeecceeeecCCCCCCCCCCcee
Q 037054 368 TAAKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTA----RMPLIKRQDRTFKLTDPTPEHCPPGEFI 443 (508)
Q Consensus 368 tgak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~----~~p~IkRhdRtFkl~dps~ehCPPGeF~ 443 (508)
+=++||+|.++.|.|.+.||||+++.++|+.. .+.+.|+|--.. -...+.+..|. -|+|.
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~----~~~l~I~g~~~~~~~~~~~~~~~~e~~------------~~~f~ 103 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVE----GNTLTIRGEREEEEEEEEEGYLRRERA------------YGEFE 103 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE----CCEEEEEEEecccccccCCceEEEEEE------------eeeEE
Confidence 44789999999999999999999999999988 677999987753 13333444443 37999
Q ss_pred EEeeCCCCCCCCcc-cccccCCCCceEEEEeecCCC
Q 037054 444 REIPLPNRIPEDAK-LEAYRDETGAMLEIIVPKHRV 478 (508)
Q Consensus 444 rei~Lp~riPeDa~-leayfd~~G~iLEiiVpK~r~ 478 (508)
|.|+||. .+|++ +.|.|. +| ||.|-+||.-.
T Consensus 104 r~~~Lp~--~v~~~~~~A~~~-nG-vL~I~lpk~~~ 135 (146)
T COG0071 104 RTFRLPE--KVDPEVIKAKYK-NG-LLTVTLPKAEP 135 (146)
T ss_pred EEEECcc--cccccceeeEee-Cc-EEEEEEecccc
Confidence 9999999 88886 589885 79 99999999743
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=98.49 E-value=7e-07 Score=73.84 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=63.9
Q ss_pred ecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCCC
Q 037054 375 EDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPE 454 (508)
Q Consensus 375 Ede~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riPe 454 (508)
-++++|.+.+-|||++.+.++|+=+ +|.+.|+|-... .-.++.++ -++|+|+|.||. .+
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~---~~~~~~~~------------~~eF~R~~~LP~--~v 62 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTV----DNLLEVSARHPQ---RMDRHGFV------------SREFTRTYILPM--DV 62 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEE----CCEEEEEEEEcc---eecCCCEE------------EEEEEEEEECCC--CC
Confidence 4789999999999999999999876 789999996431 11111221 246999999999 88
Q ss_pred Cccc-ccccCCCCceEEEEeec
Q 037054 455 DAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 455 Da~l-eayfd~~G~iLEiiVpK 475 (508)
|+.- +|.|..+| ||.|-+||
T Consensus 63 d~~~v~A~~~~dG-vL~I~~Pr 83 (83)
T cd06476 63 DPLLVRASLSHDG-ILCIQAPR 83 (83)
T ss_pred ChhhEEEEecCCC-EEEEEecC
Confidence 9887 99999999 99999997
No 15
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=98.45 E-value=5.5e-07 Score=74.51 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=65.9
Q ss_pred EEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCC
Q 037054 372 TIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNR 451 (508)
Q Consensus 372 ~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~r 451 (508)
+|+|++++|.+.+-|||++.+.++|+=. +|.+.|+|-.-.- +.+ .-|+|.|.|+||.
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~----~~~L~I~ger~~~------~~~------------~~g~F~R~~~LP~- 58 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS----NNQIEVHAEKLAS------DGT------------VMNTFTHKCQLPE- 58 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEecc------CCC------------EEEEEEEEEECCC-
Confidence 6899999999999999999999999665 6899999853200 000 3589999999999
Q ss_pred CCCCccc-ccccCCCCceEEEEeec
Q 037054 452 IPEDAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 452 iPeDa~l-eayfd~~G~iLEiiVpK 475 (508)
++|+.- +|.|..+| ||+|-+++
T Consensus 59 -~vd~e~v~A~l~~~G-vL~I~~~~ 81 (81)
T cd06479 59 -DVDPTSVSSSLGEDG-TLTIKARR 81 (81)
T ss_pred -CcCHHHeEEEecCCC-EEEEEecC
Confidence 999987 99999999 99998754
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.33 E-value=2.7e-06 Score=70.87 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=62.1
Q ss_pred ecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCCC
Q 037054 375 EDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPE 454 (508)
Q Consensus 375 Ede~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riPe 454 (508)
|++++|.|.+-|||++++.++|+=+ +|.+.|+|-...- +..+-|. . +.|+|+|+||. .+
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~----~~~L~I~ge~~~~-----~~~~~~~-~---------r~F~R~~~LP~--~V 62 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVF----EGWLLIKGQHGVR-----MDEHGFI-S---------RSFTRQYQLPD--GV 62 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEE----CCEEEEEEEEccc-----cCCCCEE-E---------EEEEEEEECCC--Cc
Confidence 6899999999999999999999776 8999999975431 1112221 1 18999999999 88
Q ss_pred Cccc-ccccCCCCceEEEEe
Q 037054 455 DAKL-EAYRDETGAMLEIIV 473 (508)
Q Consensus 455 Da~l-eayfd~~G~iLEiiV 473 (508)
|+.- +|.|-.+| ||+|-.
T Consensus 63 d~~~v~A~~~~dG-vL~I~~ 81 (83)
T cd06477 63 EHKDLSAMLCHDG-ILVVET 81 (83)
T ss_pred chheEEEEEcCCC-EEEEEe
Confidence 8887 99988999 999876
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.32 E-value=1.5e-06 Score=73.07 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=63.6
Q ss_pred cCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCCCC
Q 037054 376 DDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPED 455 (508)
Q Consensus 376 de~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riPeD 455 (508)
++++|.+.+-|||++++.++|+.. +|.+.|+|-...-..- ..+ .+. ..|+|.|+|.||. .+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~----~~~L~I~ger~~~~e~---~~~--------~er-~~g~F~R~f~LP~--~Vd 67 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK----DGKVQVSAERENRYDC---LGS--------KKY-SYMNICKEFSLPP--GVD 67 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEeccccc---CCc--------cEE-EEEEEEEEEECCC--CcC
Confidence 688999999999999999999988 7999999976432110 111 011 6799999999999 889
Q ss_pred ccc-ccccCCCCceEEEEe
Q 037054 456 AKL-EAYRDETGAMLEIIV 473 (508)
Q Consensus 456 a~l-eayfd~~G~iLEiiV 473 (508)
+.- +|.|.-+| ||+|=-
T Consensus 68 ~d~i~A~~~~~~-~l~i~~ 85 (87)
T cd06482 68 EKDVTYSYGLGS-VVKIET 85 (87)
T ss_pred hHHcEEEEcCCC-EEEEee
Confidence 887 99999999 999843
No 18
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=98.25 E-value=4.9e-06 Score=69.01 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=64.3
Q ss_pred ecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCCC
Q 037054 375 EDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPE 454 (508)
Q Consensus 375 Ede~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riPe 454 (508)
+-+++|.+.+-|||++.+.++|+=+ ++.+.|+|-......- .++.|. +--|+|.|+|.||. ++
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~----~~~L~I~g~~~~~~~~---~~~~~~--------~~~~~F~R~~~LP~--~V 66 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD----GRKLVVTGKREKKNED---EKGSFS--------YEYQEFVREAQLPE--HV 66 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE----CCEEEEEEEEeeeccc---CCCcEE--------EEeeEEEEEEECCC--Cc
Confidence 3578999999999999999988765 7999999976432110 111111 11389999999999 99
Q ss_pred Cccc-ccccCCCCceEEEEeec
Q 037054 455 DAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 455 Da~l-eayfd~~G~iLEiiVpK 475 (508)
|+.- +|.|-.+| ||.|-+|.
T Consensus 67 d~~~i~A~~~~dG-vL~I~~P~ 87 (87)
T cd06481 67 DPEAVTCSLSPSG-HLHIRAPR 87 (87)
T ss_pred ChHHeEEEeCCCc-eEEEEcCC
Confidence 9987 99999999 99998873
No 19
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.24 E-value=5.7e-06 Score=60.95 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=66.1
Q ss_pred EEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCC
Q 037054 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRI 452 (508)
Q Consensus 373 IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~ri 452 (508)
+++.++.|.+.|-||++..+.++|.-.+ +.|.|++....... .-++.+.|.++|+||.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~----~~l~v~~~~~~~~~----------------~~~~~~~~~~~~~L~~-- 58 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED----NVLTISGKREEEEE----------------RERSYGEFERSFELPE-- 58 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC----CEEEEEEEEcCCCc----------------ceEeeeeEEEEEECCC--
Confidence 3678899999999999999999888773 88999988765444 4567899999999999
Q ss_pred CCCccc-ccccCCCCceEEEEeec
Q 037054 453 PEDAKL-EAYRDETGAMLEIIVPK 475 (508)
Q Consensus 453 PeDa~l-eayfd~~G~iLEiiVpK 475 (508)
+.|+.- .+.|+. | +|+|.++|
T Consensus 59 ~i~~~~~~~~~~~-~-~l~i~l~K 80 (80)
T cd00298 59 DVDPEKSKASLEN-G-VLEITLPK 80 (80)
T ss_pred CcCHHHCEEEEEC-C-EEEEEEcC
Confidence 777775 777776 7 89999987
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=97.20 E-value=0.0014 Score=55.88 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCeeeeEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeE
Q 037054 365 GPVTAAKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIR 444 (508)
Q Consensus 365 GPvtgak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~r 444 (508)
||.--.-++--+++.|-|.+.+-+++.+.++|.=. ++.|.|+|--...+. -++ |- + ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~----~~~L~V~Gkh~~~~~---e~g--~~--------~--r~F~R 62 (91)
T cd06480 2 GPPEPRNPPPNSSEPWKVCVNVHSFKPEELTVKTK----DGFVEVSGKHEEQQK---EGG--IV--------S--KNFTK 62 (91)
T ss_pred CCCcccCCCCCCCCcEEEEEEeCCCCHHHcEEEEE----CCEEEEEEEECcccC---CCC--EE--------E--EEEEE
Confidence 34444445556889999999999999999999754 789999997653221 111 11 1 89999
Q ss_pred EeeCCCCCCCCccc-ccccCCCCceEEEEee
Q 037054 445 EIPLPNRIPEDAKL-EAYRDETGAMLEIIVP 474 (508)
Q Consensus 445 ei~Lp~riPeDa~l-eayfd~~G~iLEiiVp 474 (508)
+|.||- .+|+.- .|.+..+| +|.|-.|
T Consensus 63 ~~~LP~--~Vd~~~v~s~l~~dG-vL~IeaP 90 (91)
T cd06480 63 KIQLPP--EVDPVTVFASLSPEG-LLIIEAP 90 (91)
T ss_pred EEECCC--CCCchhEEEEeCCCC-eEEEEcC
Confidence 999999 999988 99999999 9999876
No 21
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=96.41 E-value=0.021 Score=44.63 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=53.4
Q ss_pred EecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCC
Q 037054 374 YEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIP 453 (508)
Q Consensus 374 yEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riP 453 (508)
+++++.+.|.|-||++....++|+-. +..++|++ .+|.+++.|+. +
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~----~~~l~i~~----------------------------~~~~~~~~l~~--~ 47 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCS----DLYLKVNF----------------------------PPYLFELDLAA--P 47 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEe----cCEEEEcC----------------------------CCEEEEEeCcc--c
Confidence 67889999999999999888887655 34566655 14899999999 6
Q ss_pred CCccc-ccccCCCCceEEEEeecCC
Q 037054 454 EDAKL-EAYRDETGAMLEIIVPKHR 477 (508)
Q Consensus 454 eDa~l-eayfd~~G~iLEiiVpK~r 477 (508)
+||.- .+.++ +| .|||.++|..
T Consensus 48 I~~e~~~~~~~-~~-~l~i~L~K~~ 70 (78)
T cd06469 48 IDDEKSSAKIG-NG-VLVFTLVKKE 70 (78)
T ss_pred ccccccEEEEe-CC-EEEEEEEeCC
Confidence 68876 66664 46 7999999963
No 22
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.042 Score=52.04 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=66.9
Q ss_pred eEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcce------eeeecceeeecCCCCCCCCCCcee
Q 037054 370 AKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPL------IKRQDRTFKLTDPTPEHCPPGEFI 443 (508)
Q Consensus 370 ak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~------IkRhdRtFkl~dps~ehCPPGeF~ 443 (508)
+.+|+|.+++|-|.+.|||+..+.+|+.-. ..+.+.|+|-...-..= .++-.|.. |.|.
T Consensus 86 ~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~---~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~------------g~F~ 150 (196)
T KOG0710|consen 86 PWDVKESPDAHEFKVDLPGLKKEDIKVEVE---DEKVLTISGERKKEEEESGSGKKWKRVERKL------------GKFK 150 (196)
T ss_pred CcccccCCCceEEEeeCCCCCchhceEEec---cCcEEEEecccccccccccCCccceeehhcc------------cceE
Confidence 345799999999999999999999999866 33378888876533321 22222322 4999
Q ss_pred EEeeCCCCCCCCccc-ccccCCCCceEEEEeecCCCC
Q 037054 444 REIPLPNRIPEDAKL-EAYRDETGAMLEIIVPKHRVG 479 (508)
Q Consensus 444 rei~Lp~riPeDa~l-eayfd~~G~iLEiiVpK~r~g 479 (508)
|.|.||.-+ |... +|.| .+| ||=++|||.-.-
T Consensus 151 r~~~lPenv--~~d~ikA~~-~nG-VL~VvvpK~~~~ 183 (196)
T KOG0710|consen 151 RRFELPENV--DVDEIKAEM-ENG-VLTVVVPKLEPL 183 (196)
T ss_pred eeecCCccc--cHHHHHHHh-hCC-eEEEEEeccccc
Confidence 999999954 5555 6666 689 899999998553
No 23
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=94.95 E-value=0.24 Score=37.81 Aligned_cols=74 Identities=24% Similarity=0.216 Sum_probs=55.0
Q ss_pred EecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCC
Q 037054 374 YEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIP 453 (508)
Q Consensus 374 yEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riP 453 (508)
+++++.+.|.|-+|++..+.+.|...+ ..+.|++... ..++|.+++.|+. +
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~----~~l~i~~~~~-----------------------~~~~~~~~~~L~~--~ 52 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP----KSLTVSVKGG-----------------------GGKEYLLEGELFG--P 52 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec----CEEEEEeeCC-----------------------CCCceEEeeEccC--c
Confidence 466788899999999987777777652 4566665422 3467899999999 7
Q ss_pred CCccc-ccccCCCCceEEEEeecCCC
Q 037054 454 EDAKL-EAYRDETGAMLEIIVPKHRV 478 (508)
Q Consensus 454 eDa~l-eayfd~~G~iLEiiVpK~r~ 478 (508)
+|+.- .+.+ .+| .|||.+.|...
T Consensus 53 I~~~~s~~~~-~~~-~l~i~L~K~~~ 76 (84)
T cd06463 53 IDPEESKWTV-EDR-KIEITLKKKEP 76 (84)
T ss_pred cchhhcEEEE-eCC-EEEEEEEECCC
Confidence 77775 4445 446 89999999754
No 24
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=89.69 E-value=1.5 Score=34.54 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=54.9
Q ss_pred EEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCC
Q 037054 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRI 452 (508)
Q Consensus 373 IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~ri 452 (508)
-|++++-..|.|-+|++..+.++|.-++ -.|+|++... ..++|..++.|..
T Consensus 2 W~Qt~~~v~i~v~~~~~~~~~v~v~~~~----~~l~i~~~~~-----------------------~~~~~~~~~~L~~-- 52 (84)
T cd06466 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNE----QSLSVSIILP-----------------------GGSEYQLELDLFG-- 52 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEec----CEEEEEEECC-----------------------CCCeEEEeccccc--
Confidence 4667777788888999988888888763 2466654421 3457888999999
Q ss_pred CCCcccccccCCCCceEEEEeecCC
Q 037054 453 PEDAKLEAYRDETGAMLEIIVPKHR 477 (508)
Q Consensus 453 PeDa~leayfd~~G~iLEiiVpK~r 477 (508)
++||.-.-+.-++| .+||...|..
T Consensus 53 ~I~~~~s~~~~~~~-~vei~L~K~~ 76 (84)
T cd06466 53 PIDPEQSKVSVLPT-KVEITLKKAE 76 (84)
T ss_pred ccCchhcEEEEeCe-EEEEEEEcCC
Confidence 88888544444566 7999999963
No 25
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=4.7 Score=38.27 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=80.3
Q ss_pred CeeeeEEEEecCceEEEEEecCccccCceeEEEEeccCCceEEEEEEecCCc---ceeeeecceeeecCCCCCCCCCCce
Q 037054 366 PVTAAKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARM---PLIKRQDRTFKLTDPTPEHCPPGEF 442 (508)
Q Consensus 366 Pvtgak~IyEde~gYLi~VSLPfVd~~~vkvSwrnt~t~GiVkIscvST~~~---p~IkRhdRtFkl~dps~ehCPPGeF 442 (508)
+..|+..|-.++++|=+.+=.-......++|.=. ++.|.|+|=--.++ -||+| +|
T Consensus 60 ~~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~----~~~l~V~gkHeer~d~~G~v~R------------------~F 117 (173)
T KOG3591|consen 60 LSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTD----DNTLEVEGKHEEKEDEHGYVSR------------------SF 117 (173)
T ss_pred CcccccccccCCCcEEEEEEcccCcccceEEEeC----CCEEEEEeeeccccCCCCeEEE------------------EE
Confidence 6778899999999999999888999999988533 44888988766443 45555 59
Q ss_pred eEEeeCCCCCCCCccc-ccccCCCCceEEEEeecCCCCC-CceeEEEEec
Q 037054 443 IREIPLPNRIPEDAKL-EAYRDETGAMLEIIVPKHRVGP-EEHEVRVCLR 490 (508)
Q Consensus 443 ~rei~Lp~riPeDa~l-eayfd~~G~iLEiiVpK~r~g~-eehev~v~lr 490 (508)
+|.|.||. =+||.- ......|| ||=|=+||.-... .|.+|.+---
T Consensus 118 ~R~y~LP~--~vdp~~V~S~LS~dG-vLtI~ap~~~~~~~~er~ipI~~~ 164 (173)
T KOG3591|consen 118 VRKYLLPE--DVDPTSVTSTLSSDG-VLTIEAPKPPPKQDNERSIPIEQV 164 (173)
T ss_pred EEEecCCC--CCChhheEEeeCCCc-eEEEEccCCCCcCccceEEeEeec
Confidence 99999999 899998 99999999 9999999985443 3777766543
No 26
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=59.44 E-value=17 Score=34.69 Aligned_cols=46 Identities=33% Similarity=0.572 Sum_probs=32.5
Q ss_pred eeeeecceeeecCCCCCCCC--CCceeE--EeeCCCCCCCCccc--ccccCCCC
Q 037054 419 LIKRQDRTFKLTDPTPEHCP--PGEFIR--EIPLPNRIPEDAKL--EAYRDETG 466 (508)
Q Consensus 419 ~IkRhdRtFkl~dps~ehCP--PGeF~r--ei~Lp~riPeDa~l--eayfd~~G 466 (508)
+|+=|+.||.|-|-+ -|| ||+|.. ++-||+-+|----+ .--||++|
T Consensus 81 gi~ihsethDLCdet--sCPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~ 132 (153)
T KOG4680|consen 81 GIRIHSETHDLCDET--SCPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKG 132 (153)
T ss_pred eEEEeeccccccccc--cCCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCC
Confidence 455688889998777 788 999986 67899977765433 23355555
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=47.41 E-value=1.2e+02 Score=29.70 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=28.5
Q ss_pred ceeEEeeCCCCCCCCccc-ccccCCCCceEEEEee
Q 037054 441 EFIREIPLPNRIPEDAKL-EAYRDETGAMLEIIVP 474 (508)
Q Consensus 441 eF~rei~Lp~riPeDa~l-eayfd~~G~iLEiiVp 474 (508)
.|..+++||- |+|+.- .|.|+..=.+|.|.+|
T Consensus 295 ~y~L~l~LP~--~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 295 KYRLDLPLPY--PVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred ceEEEccCCC--cccCCCceEEEccCCCEEEEEEE
Confidence 6778899999 999999 9999998889998775
No 28
>PF10123 Mu-like_Pro: Mu-like prophage I protein; InterPro: IPR012106 This entry is represented by the Bacteriophage Mu, Gp32. The characteristics of the protein distribution suggest prophage matches.
Probab=43.19 E-value=27 Score=35.44 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=32.8
Q ss_pred cccccccCCC----------CCceeeeEEEecCCCCCCC------------------CHHHHHHhHhhhcCc
Q 037054 200 MQRKHYRGLS----------NPQCVHGIEVVPSPNLMNL------------------DEEERKRWVELTGRD 243 (508)
Q Consensus 200 mqrkHyRgls----------npqcVhGIevV~sPnl~~l------------------~eeD~kRw~eLTGrd 243 (508)
+..|+|||+| +...||++=++|.|+|.+| ..+.+|+..++.|..
T Consensus 92 i~~~eYry~SPvf~~d~~~g~v~~l~~aaLTN~P~l~gl~~l~a~~~~~~~~~~~~~~~~~lk~L~~aLGL~ 163 (326)
T PF10123_consen 92 IANKEYRYLSPVFHYDKDTGRVLRLHSAALTNRPALDGLAPLAALASSQQSTQEEEEMMMLLKALAAALGLP 163 (326)
T ss_pred HhCCCCceeCceeeecCCCCcEEEEEEeeecCCCcccccHHHHhhhcccccccccccchHHHHHHHHHhCCC
Confidence 4456666654 4458999999999999766 336678888888866
No 29
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=34.88 E-value=63 Score=26.29 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=36.0
Q ss_pred cccCCeeeeEEEEecCceEEEEEec---------Cc----cccCceeEEEEeccCCceEEEEEEecCCccee
Q 037054 362 NVFGPVTAAKTIYEDDEGFLIIISL---------PF----ADLQRVKVTWRNTPTHGIVKVSCVSTARMPLI 420 (508)
Q Consensus 362 ~~~GPvtgak~IyEde~gYLi~VSL---------Pf----Vd~~~vkvSwrnt~t~GiVkIscvST~~~p~I 420 (508)
.+++|.-||-+.+.++.=.++.+++ || ++.+.+-|.|. +|.|.|.-+...|.+-+
T Consensus 23 Ral~p~pga~~~~~~~~i~i~~~~~~~~~~~~~~pG~i~~~~~~~l~V~~~----dg~l~i~~~q~~gkk~~ 90 (100)
T PF02911_consen 23 RALNPYPGAFTTFNGKRIKILKAEPLEDDSSSNPPGTIVYIDKNGLLVACG----DGALRIRELQPEGKKPM 90 (100)
T ss_dssp HHTTTTT-EEEEETTEEEEEEEEEEEETTSSSSSTTBEEEEETTEEEEETS----BSEEEEEEEEETTS-EE
T ss_pred hCCCCCCCEEEeeCCeEEEEEeeeecccccccccCceEEEEcCCEEEEEEC----CcEEEEEEEEcCCCCEE
Confidence 4445777888888776667777765 76 34445556554 88888888887666543
No 30
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=29.65 E-value=1.4e+02 Score=29.33 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=47.8
Q ss_pred eeEEEEecCceEEEEE-ecCccccCc-eeEEEEeccCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEe
Q 037054 369 AAKTIYEDDEGFLIII-SLPFADLQR-VKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREI 446 (508)
Q Consensus 369 gak~IyEde~gYLi~V-SLPfVd~~~-vkvSwrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei 446 (508)
..+++-+.++||+.+| =||||-.+. ++|.++ . ..+.+.|. .+ +.+..++
T Consensus 92 ~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~-~-d~~~L~i~----~~-----------------------~~~~krv 142 (177)
T PF05455_consen 92 IHVDTRERDDGELVVVADLPGVSDDDAIDVTLD-D-DEGALTIR----VG-----------------------EKYLKRV 142 (177)
T ss_pred eeeeeEecCCCcEEEEEeCCCCCcccceeeEee-c-CCceEEEe----cC-----------------------CceEeeE
Confidence 3478888999855555 599996555 888877 2 23344441 11 2345578
Q ss_pred eCCCCCCCCccc-ccccCCCCceEEEEeecC
Q 037054 447 PLPNRIPEDAKL-EAYRDETGAMLEIIVPKH 476 (508)
Q Consensus 447 ~Lp~riPeDa~l-eayfd~~G~iLEiiVpK~ 476 (508)
.||.++ +.. .+.|. .| ||||.+-|.
T Consensus 143 ~L~~~~---~e~~~~t~n-Ng-ILEIri~~~ 168 (177)
T PF05455_consen 143 ALPWPD---PEITSATFN-NG-ILEIRIRRT 168 (177)
T ss_pred ecCCCc---cceeeEEEe-Cc-eEEEEEeec
Confidence 899843 344 66664 57 999998655
No 31
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=27.58 E-value=1e+02 Score=29.49 Aligned_cols=54 Identities=26% Similarity=0.304 Sum_probs=36.4
Q ss_pred ecCccccCceeEEEEec--cCCceEEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeEEe
Q 037054 385 SLPFADLQRVKVTWRNT--PTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREI 446 (508)
Q Consensus 385 SLPfVd~~~vkvSwrnt--~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~rei 446 (508)
.|-| -.|..+|+|.|+ ..+|+|.|.|+|--=.| |=|==|| -+=+=|-|-|-|+=
T Consensus 44 rlDF-~~Q~L~F~~W~v~l~~pGkvtItgtsQ~WTP-----DLTnLMT--RQLLeP~~~Fwr~~ 99 (151)
T PF06554_consen 44 RLDF-SQQKLQFSRWNVSLDKPGKVTITGTSQLWTP-----DLTNLMT--RQLLEPAAVFWRKA 99 (151)
T ss_dssp EEE--TTSSEEEEEEEEEESSSEEEEEEEB-TTS-T-----TTS-SBC--CCCSSSEEEEEEET
T ss_pred Eecc-hhheeeeeEEEEEeCCCCeEEEEeeccccCc-----chhHHHH--HHhcchhhhhccCC
Confidence 3455 456799999986 58899999999875555 4444566 45566888898873
No 32
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=27.01 E-value=2.4e+02 Score=26.54 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=32.9
Q ss_pred CccccCceeE-EEEeccCCceEEEEEEecCCcceeeeecceeeecCCCC-CCCCCCceeEEeeCCC
Q 037054 387 PFADLQRVKV-TWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTP-EHCPPGEFIREIPLPN 450 (508)
Q Consensus 387 PfVd~~~vkv-Swrnt~t~GiVkIscvST~~~p~IkRhdRtFkl~dps~-ehCPPGeF~rei~Lp~ 450 (508)
|..++|.|-+ +|+....+|.+.|...|. .+ .-||| .|+|-..+.+
T Consensus 99 pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv------------------~~~~~~p~-g~VR~~~~~~ 145 (197)
T cd08869 99 PHPTRDYVVLRTWRTDLPKGACVLVETSV------------------EHTEPVPL-GGVRAVVLAS 145 (197)
T ss_pred CCCCceEEEEEEEEecCCCCcEEEEEECC------------------cCCCCCCC-CCEEEEEEee
Confidence 5778888877 899778888777776554 12 35777 8888887766
No 33
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.54 E-value=1e+02 Score=28.96 Aligned_cols=56 Identities=30% Similarity=0.338 Sum_probs=40.9
Q ss_pred EecCccccCce--eEEEEeccCCce-EEEEEEecCCcceeeeecceeeecCCCCCCCCCCceeE
Q 037054 384 ISLPFADLQRV--KVTWRNTPTHGI-VKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIR 444 (508)
Q Consensus 384 VSLPfVd~~~v--kvSwrnt~t~Gi-VkIscvST~~~p~IkRhdRtFkl~dps~ehCPPGeF~r 444 (508)
.||||-+.++. -|.+.-+...|+ |-|+|---.-+--+.|.+++|.|+ -|+-|-|.+
T Consensus 56 ~sLpFqkiqh~IttvD~QPt~~g~ilv~V~G~Lk~dEd~~~~FsQvF~L~-----~n~~~~~~v 114 (126)
T KOG2104|consen 56 TSLPFQKIQHSITTVDSQPTPDGGILVMVVGQLKLDEDPILRFSQVFLLK-----PNIQGSYYV 114 (126)
T ss_pred hcCChhhhhceeeecccccCCCCcEEEEEeeeeeeccCCccceeeEEEEe-----EcCCCCEEE
Confidence 69999988887 667776755555 445666555689999999999999 344455544
No 34
>PRK08760 replicative DNA helicase; Provisional
Probab=23.85 E-value=1.2e+02 Score=32.80 Aligned_cols=54 Identities=28% Similarity=0.458 Sum_probs=36.6
Q ss_pred CCCCCCCCccc------ccccCCC-----CceEEEEeecCCCCCCceeEEEEecCCCCCCCCcccccccc
Q 037054 448 LPNRIPEDAKL------EAYRDET-----GAMLEIIVPKHRVGPEEHEVRVCLRPSPWSERPFVDLEEAI 506 (508)
Q Consensus 448 Lp~riPeDa~l------eayfd~~-----G~iLEiiVpK~r~g~eehev~v~lrp~~~~~~~~~~~~~~~ 506 (508)
=.|-|..||.+ ..||+.+ | +.|++|-|+|.||-- .|.+...+. ..-|.|++.+-
T Consensus 407 eSg~IeqdAD~vl~l~R~~~y~~~~~~~~~-~~eliiaKnR~G~~g-~~~l~f~~~---~~~f~~~~~~~ 471 (476)
T PRK08760 407 ESGAIEQDADMIVFIYRDDYYNKENSPDKG-LAEIIIGKHRGGPTG-SCKLKFFGE---YTRFDNLAHDS 471 (476)
T ss_pred hccchhcCCCEEEEEechhhcccccccCCC-ceEEEEEccCCCCCc-eEEEEEecC---CCceecccccc
Confidence 35777888874 4566533 6 799999999999865 577766653 23456665543
No 35
>PF06573 Churchill: Churchill protein; InterPro: IPR009508 This family consists of several eukaryotic Churchill proteins. This protein contains a novel zinc binding region that mediates FGF signalling during neural development. The slow induction by FGF of a transcription factor (Churchill) in the neural plate in turn induces expression of Sip1 (Smad interacting protein-1), which inhibits mesodermal genes and sensitizes cells to later neural inducing factors [].; GO: 0008270 zinc ion binding, 0007275 multicellular organismal development, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2JOX_A.
Probab=23.66 E-value=1.1e+02 Score=28.20 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=33.9
Q ss_pred eEEEEEEecCCcceeeeecceeeecCCCCC------CCCCCceeEEeeCCCCCCCCcccc
Q 037054 406 IVKVSCVSTARMPLIKRQDRTFKLTDPTPE------HCPPGEFIREIPLPNRIPEDAKLE 459 (508)
Q Consensus 406 iVkIscvST~~~p~IkRhdRtFkl~dps~e------hCPPGeF~rei~Lp~riPeDa~le 459 (508)
+|+-.=+=..+.-.|-||.=||.+.|-.++ +|--||=++|| .|+||+..
T Consensus 54 ivTY~HvC~nC~HvIA~HEYtF~V~~~yQeY~M~ClLCG~~eDs~Sv-----lPdDPR~~ 108 (112)
T PF06573_consen 54 IVTYDHVCKNCHHVIARHEYTFSVVDDYQEYTMLCLLCGKAEDSISV-----LPDDPRQM 108 (112)
T ss_dssp EEEEEEEETTT--EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEE-------TT-----
T ss_pred EEEeeeccCccceEEEeeeEEEEEeccchhhhHHHHHhCCccCceee-----CCCChHHh
Confidence 455566777899999999999999988776 89999999998 48899984
No 36
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=22.75 E-value=3.5e+02 Score=22.12 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=43.2
Q ss_pred CceeEEEEeccCCceEEEEEEecC---CcceeeeecceeeecCCCCCCCCCCceeEEeeCCCCCCCCcccccccCCCCc
Q 037054 392 QRVKVTWRNTPTHGIVKVSCVSTA---RMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPEDAKLEAYRDETGA 467 (508)
Q Consensus 392 ~~vkvSwrnt~t~GiVkIscvST~---~~p~IkRhdRtFkl~dps~ehCPPGeF~rei~Lp~riPeDa~leayfd~~G~ 467 (508)
..|.|.|.+ ....|.|.|-=+. ..|..|..+. |..+ . .+|||.+.-.|-.=|.--.||.....-|+.|.
T Consensus 2 ~~v~f~~~~--~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~--~--~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~ 73 (79)
T cd02859 2 VPTTFVWPG--GGKEVYVTGSFDNWKKKIPLEKSGKG-FSAT--L--RLPPGKYQYKFIVDGEWRHSPDLPTETDDEGN 73 (79)
T ss_pred eEEEEEEcC--CCcEEEEEEEcCCCCccccceECCCC-cEEE--E--EcCCCCEEEEEEECCEEEeCCCCCccCCCCCc
Confidence 468899996 6678999985331 3455555554 5555 2 36777777666666655566665444555553
No 37
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.08 E-value=67 Score=33.20 Aligned_cols=53 Identities=28% Similarity=0.518 Sum_probs=38.2
Q ss_pred CCCCcceeEEeeeccce-----eeeeccCCCcccccccc---------hhhhccCCCCCCCCCCCCcccc
Q 037054 137 SDLQLDSFLVQHDMENM-----YMWVFKEKPENALGKMQ---------LRSFMNGHSRQGERPFPFSVDK 192 (508)
Q Consensus 137 sdL~ld~FlvqhdMEnm-----YmwvfKe~penalgKmq---------LrsymnGhsr~ge~qFPfs~~~ 192 (508)
+.|++-+++|.|||+.+ |.|++.+..=-+-|+.+ +|+||+|.- ..+.+|.++.
T Consensus 193 ~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~G~~---~gpi~~~~~~ 259 (263)
T COG1127 193 DALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFNGIR---DGPIPFRYPA 259 (263)
T ss_pred HhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhcCCC---CCceeccCCC
Confidence 45888899999999987 47777776555555432 789999986 4556665554
No 38
>PRK05636 replicative DNA helicase; Provisional
Probab=20.11 E-value=90 Score=34.10 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=29.0
Q ss_pred CCCCCCCccc------ccccCCC----CceEEEEeecCCCCCCceeEEEEecC
Q 037054 449 PNRIPEDAKL------EAYRDET----GAMLEIIVPKHRVGPEEHEVRVCLRP 491 (508)
Q Consensus 449 p~riPeDa~l------eayfd~~----G~iLEiiVpK~r~g~eehev~v~lrp 491 (508)
.|-|-.||.+ ..||+.+ | +.|+||-|+|.||- =.|.+...+
T Consensus 444 SG~IEqdAD~vl~l~R~~~y~~~~~~~g-~~elivaK~RnG~~-Gtv~l~f~~ 494 (505)
T PRK05636 444 SGSLEQDADMVMLLYRPDSQDKDDERAG-EADIILAKHRGGPI-DTVQVAHQL 494 (505)
T ss_pred cccccccCCEEEEEecccccCCccCCCC-ceEEEEecCCCCCC-ceEEEEeec
Confidence 4567778774 4556433 6 79999999999975 356776665
Done!