RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037054
(508 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 40.2 bits (95), Expect = 2e-04
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDP 432
+YE D+ +++ LP + +KV + G++ +S + R
Sbjct: 2 VYETDDAYVVEADLPGFKKEDIKVEVED----GVLTISGEREEEEEEEENYLR------- 50
Query: 433 TPEHCPPGEFIREIPLPNRIPEDAKLEA-YRDETGAMLEIIVPK 475
G F R LP + D K++A + G +L I +PK
Sbjct: 51 --RERSYGSFSRSFRLPEDVDPD-KIKASLEN--G-VLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 34.9 bits (81), Expect = 0.010
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 25/104 (24%)
Query: 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDP 432
Y+ D+ ++ + LP + +KV + ++ +S K +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED----NVLTISG----------------KREEE 40
Query: 433 TPEHCPPGEFIREIPLPNRI-PEDAKLEAYRDETGAMLEIIVPK 475
GEF R LP + PE +K E G +LEI +PK
Sbjct: 41 EERERSYGEFERSFELPEDVDPEKSK---ASLENG-VLEITLPK 80
>gnl|CDD|234921 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 724
Score = 32.0 bits (74), Expect = 0.94
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 226 MNLDEEERKRWVELTGRDLNFSIPTEA-------SEFCSWRNS 261
M L ++E +R E+ GR+ NF TE SE CS+++S
Sbjct: 11 MGLTDDEYERIREILGREPNF---TELGMFSVMWSEHCSYKSS 50
>gnl|CDD|235321 PRK04946, PRK04946, hypothetical protein; Provisional.
Length = 181
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 104 AWFFFSFYFKPVLNEKSKSKIVWDAEGVSGYE-----KSDLQLDSFLVQHDM 150
A +FS F+P+LN + + + E V +E + D + FL H +
Sbjct: 54 ASHYFSDEFQPLLNTEGPVR--YVREDVDHFELKKLRRGDYSPELFLDLHGL 103
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 31.2 bits (71), Expect = 1.4
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 163 ENALGKMQLRSFMNGHSRQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPS 222
E G+ R+ + GH +QG P PF D+ VR+ R+ + + I+
Sbjct: 635 EEGKGRFDARTAVLGHMQQGGSPSPF--DR--VRATRLAIRAVDFIEEK-----IKANKH 685
Query: 223 PNLMNLDEEERKRWV-ELTGRDLNFS--IPTEASEFCSWRNSPNTEFELERPH 272
+ ++ D + V + G ++ F+ A+E T+FE RP
Sbjct: 686 ADKLSAD--DTSAVVIGIRGSNVLFTPVKQLLANE---------TDFEHRRPK 727
>gnl|CDD|239618 cd03556, L-fucose_isomerase, L-fucose isomerase (FucIase); FucIase
converts L-fucose, an aldohexose, to its ketose form,
which prepares it for aldol cleavage (similar to the
isomerization of glucose during glycolysis). L-fucose
(or 6-deoxy-L-galactose) is found in blood group
determinants as well as in various oligo- and
polysaccharides, and glycosides in mammals, bacteria and
plants.
Length = 584
Score = 31.0 bits (70), Expect = 1.5
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 73 GLGP--QVHEAETVVNIPKVAKKFAKRLDSVWGAWFFFSFYFKPVLNEKSKSKIVWD 127
GLGP Q+ E TV V KR D W + +F P L K K V+D
Sbjct: 462 GLGPVLQIAEGYTVELPEDVHDILDKRTDPTWP-----TTWFAPRLTGKGAFKDVYD 513
>gnl|CDD|129905 TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC
component. Bacterial PTS transporters transport and
concomitantly phosphorylate their sugar substrates, and
typically consist of multiple subunits or protein
domains. The Gut family consists only of
glucitol-specific permeases, but these occur both in
Gram-negative and Gram-positive bacteria.E. coli
consists of IIA protein, a IIC protein and a IIBC
protein. This family is specific for the IIBC component
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids, Signal transduction, PTS].
Length = 331
Score = 30.6 bits (69), Expect = 2.0
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 45 PPDINLPLSSESSLPLLAWND--PCDILDVGLGPQVHEAETV-VNIPKV-AKKFAKRLDS 100
PP + LP L A N CD + VGL ETV V +P V +F +
Sbjct: 266 PPHLALP-------ALFAINAQAACDFIPVGLSLAEARQETVRVGVPSVLVSRFMTGAPT 318
Query: 101 VWGAWFFFSFYFK 113
V AW F ++
Sbjct: 319 VLVAWVASIFIYQ 331
>gnl|CDD|233552 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine
synthase II. Phosphoribosylformylglycinamidine synthase
is a single, long polypeptide in most Proteobacteria and
eukarotes. Three proteins are required in Bacillus
subtilis and many other species. This is the longest of
the three and is designated PurL,
phosphoribosylformylglycinamidine synthase II, or FGAM
synthase II [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 715
Score = 30.3 bits (69), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
Query: 228 LDEEERKRWVELTGRDLNFSIPTEA-------SEFCSWRNS 261
L +EE + E+ GR+ N TE SE CS+++S
Sbjct: 1 LSDEEMELIREILGREPND---TELAMFSAMWSEHCSYKSS 38
>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated.
Length = 886
Score = 30.1 bits (68), Expect = 3.4
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 423 QDRTFKLTDPTPEHCPPGEFI-REIPLPNRIPEDAKLEA--YRDE-------TGAMLEII 472
++ F LT P + F+ I + N I +DA + YR + G E I
Sbjct: 803 EEEVFDLTVPGTHN-----FVANGIIVHNSIEQDADVVILLYRPDYYDRDDPRGGEAEFI 857
Query: 473 VPKHRVGP 480
V KHR GP
Sbjct: 858 VAKHRNGP 865
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 28.7 bits (65), Expect = 5.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 384 ISLPFADLQRVKVTWRNTPTHGIVKVSCVS 413
L + V V + T+GIV V V
Sbjct: 69 YPLEEEKVGDVPVLHHDVDTNGIVYVRLVF 98
>gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional.
Length = 262
Score = 28.9 bits (65), Expect = 6.8
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 32 LEKEMNRSAM-LSRPPDINLPLSSESSLPLLAWNDPCDILDVGLG------------PQV 78
L + +S+M + P ++ L + LL P IL +GLG P
Sbjct: 32 LGSDTVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDT 91
Query: 79 HEAETVVNI-PKV 90
+T V I P+V
Sbjct: 92 R--QTAVEINPQV 102
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional.
Length = 249
Score = 28.1 bits (62), Expect = 9.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 274 LLKNGVNPHPKRLLNGTSLNLSTQPLEHSNGNKMDISPVCHKRKKDNFLRAIDGDS 329
LL+ G++P + L+ +++ + E S G K I P+ D + DGDS
Sbjct: 127 LLRQGIDPQTHKPLDANNIHKPEE--EVSGGQKYPIEPISSSHTDDTTVNGGDGDS 180
>gnl|CDD|193547 cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacylase 1-like protein
2-like, amidohydrolase subfamily. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 28.2 bits (64), Expect = 9.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 449 PNRIPEDAKLEAY-RDETGAMLEIIVPK 475
PN IP+ A+ E Y R T LE +V K
Sbjct: 215 PNIIPDYAEAEFYVRAATRKYLEELVEK 242
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.422
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,610,510
Number of extensions: 2599921
Number of successful extensions: 1895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1892
Number of HSP's successfully gapped: 17
Length of query: 508
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 407
Effective length of database: 6,457,848
Effective search space: 2628344136
Effective search space used: 2628344136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)