RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 037054
         (508 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 72/456 (15%), Positives = 135/456 (29%), Gaps = 117/456 (25%)

Query: 9   LSIDNYH-PSTLLSMDSGFLSHDELEKEMNRSAMLSRPPDINLPLSSESSLPLLAWNDPC 67
           L++ N + P T+L M    L    ++      +  S    + +         LL      
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 68  DILDVGLGPQVHEAETVVNIPKVAKKFAKRLDSVWGAWFFFSFYFK-PVLNEKSKSKIVW 126
           + L V                         L +V  A  + +F     +L   ++ K V 
Sbjct: 245 NCLLV-------------------------LLNVQNAKAWNAFNLSCKIL-LTTRFKQVT 278

Query: 127 DAEGVSGYEKSDLQLDSF---LVQHDMENMYMWVFKEKPENALGKMQLRSFMNGHSRQGE 183
           D   +S    + + LD     L   +++++ +     +P+       L   +   +    
Sbjct: 279 DF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ------DLPREVLTTN---- 326

Query: 184 RPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNLMNLDEEE-RKRWVELTGR 242
            P   S+    +R       +++ ++  +    IE     +L  L+  E RK +  L+  
Sbjct: 327 -PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----SLNVLEPAEYRKMFDRLSVF 381

Query: 243 DLNFSIPTEASEFCS-WRNSPNTEFELERPHPLLKNGVNPHPKRL---LNGTSLNLSTQP 298
             +  IPT        W +   ++  +        + V   PK     +    L L    
Sbjct: 382 PPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-- 437

Query: 299 LEHSNGNKMDISPVCHKR--KKDNFLRAIDGDSCLP-------------H---NSHSERV 340
                  K++     H+      N  +  D D  +P             H     H ER+
Sbjct: 438 -------KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 341 -------LDM-----KLQIVEPPWIYEFSGVMKNVFGP-------VTAAKTIYE----DD 377
                  LD      K++     W    SG + N           +      YE      
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAW--NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 378 EGFLI-----IISLPFADLQRVKVTWRNTPTHGIVK 408
             FL      +I   + DL R+ +         I +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIAL---MAEDEAIFE 581



 Score = 40.2 bits (93), Expect = 0.002
 Identities = 65/464 (14%), Positives = 123/464 (26%), Gaps = 153/464 (32%)

Query: 114 PVLNEKSKSKIVWDAEGVSGYEK---SDLQLDSFLVQ-HDMENMY--MWVFKEKPENALG 167
            V  +        D + V    K   S  ++D  ++    +       W    K E    
Sbjct: 23  SVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--- 77

Query: 168 KMQLRSFMNGHSRQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNLMN 227
              ++ F+                        + R +Y+ L +P  +   +  PS     
Sbjct: 78  --MVQKFVEE----------------------VLRINYKFLMSP--IKTEQRQPSMMTRM 111

Query: 228 LDEEERKRWVELTGRDLNFSIPTEASEFCSWRNSPNTEFELERPHPL--LKNGV---NPH 282
             E+  + +      D                N    ++ + R  P   L+  +    P 
Sbjct: 112 YIEQRDRLY-----ND----------------NQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 283 PKRLLNG------TSLNLST---QPLEHSNGNKM-------DISP---------VCHKRK 317
              L++G      T + L       ++     K+         SP         + ++  
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 318 KDNFLRAIDGDSCLPHNSHSERVLDMKLQIVEPPWIYEFS-GVMKNVFGPVTAAKTIYED 376
             N+    D  S +    HS +    +L   +P   YE    V+ NV       K     
Sbjct: 211 P-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLNVQNA----KAW--- 259

Query: 377 DEGFLIIISLPFADLQ-RVKVTWRNTP-----THGIVKVSCVSTARMPLIKRQDRTF--K 428
              F         +L  ++ +T R        +        +    M L   + ++   K
Sbjct: 260 -NAF---------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 429 LTDPTPEHCPP-------------GEFIREIPLPNRI-----PEDAKLEAYRDETGAMLE 470
             D  P+  P               E IR+                KL    + +  +LE
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 471 IIVPKHR-----VGPEEHEVRVCLRPSP-----WSERPFVDLEE 504
               +       V P      +   P+      W +    D+  
Sbjct: 368 PAEYRKMFDRLSVFPP--SAHI---PTILLSLIWFDVIKSDVMV 406


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 39/256 (15%), Positives = 73/256 (28%), Gaps = 98/256 (38%)

Query: 72   VGLGPQVHEAETVVNIPKVAKKFAKRLDSVWGAWFFFS-------------FYFKPVLNE 118
             G+G  +++        K A+    R D+ +   + FS              +F     E
Sbjct: 1629 QGMGMDLYKT------SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG---E 1679

Query: 119  KSK------SKIVWD--AEGVSGYEKSDLQLD----SFLVQHDMENMY------------ 154
            K K      S ++++   +G    EK   +++    S+  + +   +             
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739

Query: 155  ---MW-VFKEKPENALGKMQLRSFMNGHSRQGE--------RPFPFS-----VDKGFVRS 197
                +   K K     G +   +   GHS  GE                   V       
Sbjct: 1740 EKAAFEDLKSK-----GLIPADATFAGHS-LGEYAALASLADVMSIESLVEVV------- 1786

Query: 198  HRMQRKHYRGLSNPQCVHGIE----------VVPSPNLMNLDEEERKRWVELTGRDLNFS 247
                   YRG++    V   E          + P     +  +E  +  VE  G+   + 
Sbjct: 1787 ------FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840

Query: 248  IPTEASEFCSWRNSPN 263
            +  E   +    N  N
Sbjct: 1841 V--EIVNY----NVEN 1850



 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 84/502 (16%), Positives = 147/502 (29%), Gaps = 151/502 (30%)

Query: 52  LSSESSLPLLAWNDPCDILDVGLGPQVHEAETVVNIPKVAKKFAKRL-DSVWGAWFFFSF 110
           + + S+ PL         L  G        E V+ +P  +   A +L +           
Sbjct: 1   MDAYSTRPL--------TLSHG------SLEHVLLVPTASFFIASQLQEQ---------- 36

Query: 111 YFKPVLNEKSKSKIVWDAEGVSGYEKSDLQLDSFL--VQHDMENMYMWVFKEKPENALGK 168
            F  +L E ++     D E  +  E   L +  FL  V   +E   +  F +     L +
Sbjct: 37  -FNKILPEPTEG-FAADDEPTTPAE---L-VGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90

Query: 169 MQLRSFMNG---HSRQGERPFPFSVDKGFVRSHRMQRKHY--RGLSNPQCVHGIEVVPSP 223
            +   ++ G   H+   +       D   V++  + + +   R ++        +   + 
Sbjct: 91  FE-NCYLEGNDIHALAAK--LLQENDTTLVKTKELIKNYITARIMAK----RPFDKKSNS 143

Query: 224 NLMNLDEEERKR--------------WVELTGRDLNFSIPT--------EASEFCSWRNS 261
            L     E   +              + EL  RDL +             ++E  S    
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--RDL-YQTYHVLVGDLIKFSAETLSELIR 200

Query: 262 PNTEFELERPHPL-----LKNGVNPHPKRLLNGT--SLNLS--TQPLEH--SNGNKMDIS 310
              + E      L     L+N  N   K  L     S  L    Q L H       +  +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFT 259

Query: 311 PVCHKRKKDNFLRAIDGDSCLPHNSHSERVLDMKLQIVEPPW--IYE-FSGVMKNVF--G 365
           P             + G +      HS+ ++          W   +      +  +F  G
Sbjct: 260 P-------GELRSYLKGAT-----GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307

Query: 366 -------PVTA-AKTIYED----DEGF----LIIISLPFADLQ-RVKVTWRNTPTHGIVK 408
                  P T+   +I ED    +EG     L I +L    +Q  V  T  + P    V+
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367

Query: 409 VSCVSTARMPLIKRQDRTFKLTDPTPE------------HCPPGEFIREIPLPNRIPEDA 456
           +S V+ A+            ++ P P+              P G     IP   R     
Sbjct: 368 ISLVNGAKN---------LVVSGP-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL--- 414

Query: 457 KLEAYRDETGAM--LEIIVPKH 476
                     +   L +  P H
Sbjct: 415 --------KFSNRFLPVASPFH 428



 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 85/467 (18%), Positives = 129/467 (27%), Gaps = 206/467 (44%)

Query: 4   ALLTALSIDNYHPSTLLSMDSGFLSHDELEKEMNRSAMLSRPPDINLPLSSESSLPL--- 60
             L+ L         + +   G    + LE         S  PD +  LS   S PL   
Sbjct: 193 ETLSELIRTTLDAEKVFT--QGLNILEWLENP-------SNTPDKDYLLSIPISCPLIGV 243

Query: 61  --LAW---------NDPCDILDVGLGPQVHEAETVVNIPKVAKKFAKRLDSVWGAWFFFS 109
             LA            P ++     G   H ++ +V     A   A              
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLV----TAVAIA-------------- 284

Query: 110 FYFKPVLNEKSKSKIVWDAEGVSGYEKSDLQLDSFLVQHDMENMYMWVFKEKPENALGKM 169
                    ++ S   W               +SF V   +      +F       +G  
Sbjct: 285 ---------ETDS---W---------------ESFFVS--VRKAITVLFF------IG-- 307

Query: 170 QLRSFMNGHSRQGERP---FPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNLM 226
            +R            P    P S+ +                     +   E VPSP  M
Sbjct: 308 -VRC-------YEAYPNTSLPPSILE-------------------DSLENNEGVPSP--M 338

Query: 227 ----NLDEEERKRWVELTGRDLNFSIPTEASEFCSWRNSP---------------NTEFE 267
               NL +E+ + +V  T    N  +P       S  N                 N    
Sbjct: 339 LSISNLTQEQVQDYVNKT----NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394

Query: 268 -LERPHPLLKNGVNPHPKRLLNGTS--LNLSTQPLEHS---------------------N 303
             + P  L ++ + P  +R L  ++  L +++ P  HS                     N
Sbjct: 395 KAKAPSGLDQSRI-PFSERKLKFSNRFLPVAS-PF-HSHLLVPASDLINKDLVKNNVSFN 451

Query: 304 GNKMDISPVCHKRK-KDNFLRAIDGDSCLPHNSHSERVLDMKLQIVEPP--W-------- 352
              + I PV       D  LR + G       S SER++D    I+  P  W        
Sbjct: 452 AKDIQI-PVYDTFDGSD--LRVLSG-------SISERIVDC---IIRLPVKWETTTQFKA 498

Query: 353 --IYEF-----SG----VMKNVFGPVTAAKTIY--------EDDEGF 380
             I +F     SG      +N  G  T  + I         +DD GF
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDG--TGVRVIVAGTLDINPDDDYGF 543



 Score = 33.5 bits (76), Expect = 0.19
 Identities = 74/464 (15%), Positives = 133/464 (28%), Gaps = 176/464 (37%)

Query: 175 MNGHSRQGERPF---------PFSVDKG-FVRSHRMQRKHYRGLSNPQCVHGIEVVPSPN 224
           M+ +S    RP             V    F  + ++Q +  + L  P+        P+  
Sbjct: 1   MDAYST---RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKIL--PE--------PTEG 47

Query: 225 LMNLDEEERKRWVELTGRDLNFSIPTEASEFCSWRNSPNTEFELERPHPLLKNGVNPHPK 284
               DE       EL G+ L + + +          S   +F+      +L   +     
Sbjct: 48  FAADDEPTTP--AELVGKFLGY-VSSLVEP------SKVGQFD-----QVLNLCLTEFEN 93

Query: 285 RLLNGTSLNLSTQPLEHSNGNKMDISPVCHKRKKDNFLRA---IDGDSCLPHNS------ 335
             L G  ++     L   N    D + V  K    N++ A            NS      
Sbjct: 94  CYLEGNDIHALAAKLLQEN----DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149

Query: 336 ---------------HSERVLDMKLQ--------IVEPPWIYEFSGVMKNVFGPVTAAKT 372
                          +++   + +L+        +V    I   +  +  +      A+ 
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEK 207

Query: 373 IYED---------------DEGFL--IIISLPF---ADLQRVKVTWRN---TP------- 402
           ++                 D+ +L  I IS P      L    VT +    TP       
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267

Query: 403 ----TH--GIVKVSCVSTAR---------MPLIK-------RQDRTFKLTDPTP----EH 436
                H  G+V    ++               I        R    +  T   P    + 
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327

Query: 437 CPPGEFIREIPLP----NRIPEDAKLEAYRDETGAML------EIIV---PKHRV--GPE 481
               E    +P P    + +    +++ Y ++T + L      EI +    K+ V  GP 
Sbjct: 328 LENNE---GVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383

Query: 482 E--HEVRVCLR----PS-------PWSER-------------PF 499
           +  + + + LR    PS       P+SER             PF
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427



 Score = 28.5 bits (63), Expect = 7.7
 Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 3/17 (17%)

Query: 282  HPKRLLNGTSLNLSTQP 298
              K LL+ T     TQP
Sbjct: 1721 SEKGLLSATQ---FTQP 1734


>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
           chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
          Length = 123

 Score = 32.6 bits (75), Expect = 0.086
 Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 23/134 (17%)

Query: 355 EFSGVMKNVFGPVTAAKTIYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVST 414
               + +  +  V     +YE+    +++  L   + +++K           + +     
Sbjct: 11  RSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSG---QNELIIEAERE 67

Query: 415 ARMPLIKRQDRTFKLTDPTPEHCPPGEFIREIPLPNRIPEDAKLEA-YRDETGAMLEIIV 473
              P +K   +                  + I LP  + +DA++   Y +  G +L I +
Sbjct: 68  ITEPGVKYLTQRP------------KYVRKVIRLPYNVAKDAEISGKYEN--G-VLTIRI 112

Query: 474 PKHRVGPEEHEVRV 487
           P           + 
Sbjct: 113 PI----AGTSVFKF 122


>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
           finger, dimer, protein-DNA complex, cooperativity,
           transcription/DNA complex; 2.35A {Mus musculus} SCOP:
           g.37.1.1 g.37.1.1
          Length = 73

 Score = 27.3 bits (61), Expect = 2.9
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)

Query: 178 HSRQGERPFPFSV---DKGFVRSHRMQRKHYR 206
           +     RP+   V   D+ F RS  + R H R
Sbjct: 12  YVVPKMRPYACPVESCDRRFSRSDELTR-HIR 42


>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
           adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
           d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
          Length = 217

 Score = 28.5 bits (63), Expect = 4.6
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 10/102 (9%)

Query: 173 SFMNGHSRQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNLMNLDE-- 230
           +F+   S      F  SV  G         +H++ L +    + + VV   +L  L +  
Sbjct: 82  AFLIRESESAPGDFSLSVKFG------NDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYH 135

Query: 231 --EERKRWVELTGRDLNFSIPTEASEFCSWRNSPNTEFELER 270
                 R  ++  RD+             +   P  + EL  
Sbjct: 136 RSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGF 177


>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A
           {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3
          Length = 754

 Score = 28.6 bits (63), Expect = 7.1
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 4/120 (3%)

Query: 301 HSNGNKMDISPVCHKRKKDNFLRAIDGDSCLPHNSHSERVLDMKLQIVEPPWIYEFSGVM 360
             +  K+ +  +           +ID D      ++ ER  D+     +       +   
Sbjct: 147 ELSVQKVTVKNLSDAEVDVTLKPSIDADVMNEEANYDERFWDVLATDQQADRGSIVAKTT 206

Query: 361 KNVFGPVTAAKT----IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTAR 416
            N FG           +  D +   I                    +  + K   V T+R
Sbjct: 207 PNPFGTPRFTSGMEMRLVTDLKNVAITQPNEKEVTTAYTGKLAPQASAELEKRVIVVTSR 266


>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
           {Methanocaldococcus jannaschii} PDB: 1shs_A
          Length = 161

 Score = 27.4 bits (61), Expect = 7.2
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDP 432
           I E D+   +I  LP  + + + +          +++      R PL+  +      +  
Sbjct: 61  IIEGDQHIKVIAWLPGVNKEDIILNAVG----DTLEIRA---KRSPLMITESERIIYS-- 111

Query: 433 TPEHCPPGEFIREIPLPNRIPEDAKLEA-YRDETGAMLEIIVPK 475
             E     E  R I LP  + E+    A + +  G +L +I+PK
Sbjct: 112 --EIPEEEEIYRTIKLPATVKEE-NASAKFEN--G-VLSVILPK 149


>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
           genomics, structural genomics consortium, SGC; 2.39A
           {Homo sapiens}
          Length = 140

 Score = 27.3 bits (60), Expect = 7.3
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 195 VRSHRMQRKHYR-GLSNPQCVHGIEVVPSPNLMNLDEEERKRWVELTGRDLNFSIPTEAS 253
           ++    + ++Y  G+     V G ++    N    + ++RK++ +    DL  SI  E  
Sbjct: 71  MQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTD----DLRESI-AEVQ 125

Query: 254 EFCSWRNSPNTEFELER 270
           E    R     E ELE+
Sbjct: 126 EMEKHR----IESELEK 138


>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
           BAS residues, extracellular matrix, glycoprotein,
           hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
           sapiens}
          Length = 378

 Score = 28.1 bits (62), Expect = 7.8
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 190 VDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPS-PNLMNLDEEERKRWVELTGRDLNFSI 248
            D    R +    +HY  L+     + +    S  N + L      + V L  +D +  +
Sbjct: 14  ADASMARLYGRGLQHYL-LTLASIANRLYSHASIENHIRL---AVVKVVVLGDKDKSLEV 69

Query: 249 PTEASE----FCSWRNSPNTEFELERPH 272
              A+     FC W++  N   +    H
Sbjct: 70  SKNAATTLKNFCKWQHQHNQLGDDHEEH 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,040,417
Number of extensions: 485230
Number of successful extensions: 921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 19
Length of query: 508
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 410
Effective length of database: 3,965,535
Effective search space: 1625869350
Effective search space used: 1625869350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)