RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 037054
         (508 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 29.6 bits (66), Expect = 0.32
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 373 IYEDDEGFLIIISLPFADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDP 432
           I E D+   +I  LP  + + + +            +   +     +I   +R       
Sbjct: 15  IIEGDQHIKVIAWLPGVNKEDIILNAVGD------TLEIRAKRSPLMITESERIIYSE-- 66

Query: 433 TPEHCPPGEFIREIPLPNRIPEDAKLEAYRDETGAMLEIIVPK 475
                   E  R I LP  + E+     + +    +L +I+PK
Sbjct: 67  ---IPEEEEIYRTIKLPATVKEENASAKFEN---GVLSVILPK 103


>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 104

 Score = 27.6 bits (60), Expect = 1.6
 Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 19/95 (20%)

Query: 144 FLVQHDMENMYMWVFKEKPENALGKMQLRSFMNGHSRQGERPFPFSVDKGFVRSHRMQRK 203
             +  +      +      E+ LG + LR  +               +  F      +  
Sbjct: 22  KFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVH 81

Query: 204 HYRGLSNPQCVHGIEVVPSPNLMNLDEEERKRWVE 238
           ++                   L     +ER  W++
Sbjct: 82  YF-------------------LQAATPKERTEWIK 97


>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 495

 Score = 28.5 bits (63), Expect = 2.4
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 235 RWVELTGRDLNFS----IPTEASEFCSWRNSPNTEFELERPHPLLKNGVNPHPKR-LLNG 289
           +WV   GR                F S ++ P+      R HP + N V P   R ++  
Sbjct: 340 QWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIK 399

Query: 290 TSLN 293
           T +N
Sbjct: 400 TDVN 403


>d1yq2a1 b.1.4.1 (A:610-721) beta-Galactosidase, domains 2 and 4
           {Arthrobacter sp. c2-2 [TaxId: 192168]}
          Length = 112

 Score = 26.9 bits (59), Expect = 2.9
 Identities = 11/59 (18%), Positives = 17/59 (28%)

Query: 388 FADLQRVKVTWRNTPTHGIVKVSCVSTARMPLIKRQDRTFKLTDPTPEHCPPGEFIREI 446
            AD   V + WR      +     V+        R   +  +  P     P GE    +
Sbjct: 24  TADASDVVLRWRVEHDGAVAASGEVAAEGSDGPLRAGESATIALPAMPAAPLGETWLTV 82


>d1kbaa_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus
           multicinctus), kappa-bungarotoxin [TaxId: 8616]}
          Length = 66

 Score = 25.2 bits (55), Expect = 4.5
 Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 425 RT-FKLTDPTPEHCPPGEFI 443
           RT       TP+ CP G+ I
Sbjct: 1   RTCLISPSSTPQTCPNGQDI 20


>d1lsia_ g.7.1.1 (A:) Long neurotoxin 1 (component LSIII) {Sea snake
           (Laticauda semifasciata) [TaxId: 8631]}
          Length = 66

 Score = 25.2 bits (55), Expect = 5.1
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 425 RTFKLTDPTPEHCPPGE 441
           R   L     + CP G+
Sbjct: 1   RECYLNPHDTQTCPSGQ 17


>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
           looper(Trichoplusia ni), L chain [TaxId: 7111]}
          Length = 200

 Score = 26.1 bits (57), Expect = 7.8
 Identities = 19/134 (14%), Positives = 32/134 (23%), Gaps = 35/134 (26%)

Query: 24  SGFLSHDELEKEMNRSAMLSRPPDINLPL-SSESSLPLLAWNDPCDILDVGLGPQVHEAE 82
             + SH  +  E+             L L  S   L   A+    +              
Sbjct: 17  GEYGSHGNVATELQA--------YAKLHLERSYDYLLSAAY---FNNYQTNR-------- 57

Query: 83  TVVNIPKVAKKFAKRLDSVWGAWFFFSFYF-----KPVLNEKSKSKIVWDAEGVSGYEKS 137
                   +K F K  D  W        +      K   ++ S  K          +E  
Sbjct: 58  -----AGFSKLFKKLSDEAWSKTIDIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHE-- 110

Query: 138 DLQLDSFLVQHDME 151
              L++     D +
Sbjct: 111 ---LEALAKALDTQ 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,000,574
Number of extensions: 96699
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 12
Length of query: 508
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,185,626
Effective search space: 496777294
Effective search space used: 496777294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)