BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037056
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A V+ LL + D+ D NG T AA++G ++I ++LK
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 85 LLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ + I PLY AA +G + L K ++ +D+ K F S+D G
Sbjct: 94 -VNAKDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDIG 145
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 56 DENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLF 113
D G T AAAVG ++I ++L+ + + T PL+ AA G + L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD-TNGTTPLHLAASLGHLEIVEVLL 88
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A VQ LL+ D+ QD+ G T +A VD+ L+L K S
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SD 136
Query: 86 LGIRGTENIPPLYFAALFGQMGTASFLF 113
+ IR E L++AA G + A L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILL 164
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A V+ LL + D+ D G T AA G ++I ++LK N +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGAD 105
Query: 86 LGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ E PL+ AA+FG + L K+ ++ +D+ K F S+D G
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 51 DLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTAS 110
D+ D GNT AA ++I ++LK + + PL+ AALFG +
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 111 FLFHKSKKELITEDR--KVIFITSVDTG 136
L K ++ +D+ K F S+D G
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIDNG 124
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
T LH+A V+ LL D+ D +G+T AA G ++I ++LK
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKH--GADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A V+ LL D+ D G+T AA +G ++I ++LK +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH--GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 86 LGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ T PL+ AA+ G + L K ++ +D+ K F S+D G
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNG 157
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A V+ LL + D+ D G T AAA G ++I ++LK
Sbjct: 49 TPLHLAASNGHLEIVEVLLK--NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD- 105
Query: 86 LGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ + PL+ AA +G + L K ++ +D+ K F S+D G
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNG 157
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A V+ LL D+ D G+T AA +G ++I ++LK +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH--GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 86 LGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ T PL+ AA+ G + L K ++ +D+ K F S+D G
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNG 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 14 STICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVD 73
+ + A+ ++G +T LH A V+ L++ D+ +D +G T +AA G +
Sbjct: 28 ADVNASDSDG-RTPLHYAAKEGHKEIVKLLISK--GADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 74 IANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHK 115
I L++ K + + ++ PL++AA G L K
Sbjct: 85 IVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 56 DENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTEN--IPPLYFAALFGQMGTASFLF 113
DE+G T AA +G ++I ++LK + +N I PL+ AA+ G + L
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 114 HKSKKELITEDR--KVIFITSVDTG 136
K ++ +D+ K F S+D G
Sbjct: 101 -KHGADVNAQDKFGKTAFDISIDNG 124
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 22 EGHQTVLHVATGAKQTSFVQRLLNF-MDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
EG T LH A + V+ LL DP +L+ +NG T F AA G+V + L L
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 81 KNPSLLGIRGTENIPPLYF------AALFGQMGTASFLFHK 115
K + N Y AA++G++ FL+ +
Sbjct: 94 KGADV-------NECDFYGFTAFMEAAVYGKVKALKFLYKR 127
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A V+ LL D+ D+ G+T AA G ++I ++L KN +
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKH--GADVNAADKMGDTPLHLAALYGHLEIVEVLL-KNGA 104
Query: 85 LLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ T PL+ AA G + L K ++ +D+ K F S+D G
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNG 157
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 51 DLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENI--PPLYFAALFGQMGT 108
D+ +D++G T AA G ++I ++LK + + + PL+ AAL+G +
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD---VNAADKMGDTPLHLAALYGHLEI 95
Query: 109 ASFLF 113
L
Sbjct: 96 VEVLL 100
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKN 82
T LH+A A V+ LL + D+ QD+ G T F + G D+A ++ K N
Sbjct: 115 TPLHLAADAGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 22 EGHQTVLHVATGAKQTSFVQRLLNF-MDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
EG T LH A + V+ LL DP +L+ +NG T F AA G+V + L L
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFILAAIAGSVKLLKLFLS 113
Query: 81 KNPSLLGIRGTENIPPLYF------AALFGQMGTASFLFHK 115
K + N Y AA++G++ FL+ +
Sbjct: 114 KGADV-------NECDFYGFTAFMEAAVYGKVKALKFLYKR 147
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 3 EIEGLFEKDYRSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTT 62
+IE + + I A ++ QT L +A + V+ LL D+ +QD++G+T
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTA 219
Query: 63 FCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHK 115
A G +IA L+L + + + L A GQ AS L+ +
Sbjct: 220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 18 AAITEGHQTVLHVATGAKQTSFVQRLLN-FMDPEDLMLQDENGNTTFCFAAAVGAVDIAN 76
A+ ++G +T LH A V+ LL+ DP +D +G T +AA G +I
Sbjct: 32 ASDSDG-RTPLHYAAENGHKEIVKLLLSKGADPN---AKDSDGRTPLHYAAENGHKEIVK 87
Query: 77 LMLKK--NPSLLGIRGTENIPPLYFAALFGQMGTASFLFHK 115
L+L K +P+ + ++ PL++AA G L K
Sbjct: 88 LLLSKGADPN---AKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKK--N 82
+ ++ A + L N DP D +G T +AA G +I L+L K +
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 83 PSLLGIRGTENIPPLYFAALFGQMGTASFLFHK 115
P+ + ++ PL++AA G L K
Sbjct: 63 PN---AKDSDGRTPLHYAAENGHKEIVKLLLSK 92
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 51 DLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTAS 110
D+ D+ G+T AA +G +I ++LK + R T+ PL+ AA G +
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVE 97
Query: 111 FLF 113
L
Sbjct: 98 VLL 100
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A ++ +RLL D +QD G T A + A + ++L+ +
Sbjct: 23 ETALHLAARYSRSDAAKRLLEA--SADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 85 LLGIRGTENIPPLYFAALFGQMG 107
L R + PL AA G
Sbjct: 81 DLDARMHDGTTPLILAARLALEG 103
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 31 ATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRG 90
A A Q V+ L+ + D+ D+NG T AAA G ++I ++L KN + +
Sbjct: 13 AAAAGQDDEVRILM--ANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASD 69
Query: 91 TENIPPLYFAALFGQMGTASFLFHKSKKELITEDR 125
+ I PL+ AA G + L K ++ DR
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDR 103
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A V+ LL + D+ D G+T AA G ++I ++L KN +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK--NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL-KNGAD 105
Query: 86 LGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ + I PL+ AA G + L K ++ +D+ K F S++ G
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNG 157
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKN 82
T LH+A V+ LL + D+ QD+ G T F + G D+A ++ K N
Sbjct: 115 TPLHLAANRGHLEIVEVLLKY--GADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A V+ LL D+ +D+NG T AA G +++ L+L+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 85 LLGIRGTENIPPLYFAALFGQMGTASFLF 113
+ + PL+ AA G + L
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
+T LH+A V+ LL D+ +D+NG T AA G +++ L+L+
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A V+ LL D+ +D+NG T AA G +++ L+L+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 85 LLGIRGTENIPPLYFAALFGQMGTASFLF 113
+ + PL+ AA G + L
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A V+ LL D+ +D+NG T AA G +++ L+L+
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Query: 85 LLGIRGTENIPPLYFAALFGQMGTASFLF 113
+ + PL+ AA G + L
Sbjct: 94 -VNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
+T LH+A V+ LL D+ +D+NG T AA G +++ L+L+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 51 DLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTAS 110
D+ +DE G T A A G ++I ++LK + + PL+ AA G + A
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI-GFTPLHLAAFIGHLEIAE 97
Query: 111 FLFHKSKKELITEDR--KVIFITSVDTG 136
L K ++ +D+ K F S+ G
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIGNG 124
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A ++ +RLL D +QD G T A + A + ++++ +
Sbjct: 58 ETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 85 LLGIRGTENIPPLYFAALFGQMG 107
L R + PL AA G
Sbjct: 116 DLDARMHDGTTPLILAARLAVEG 138
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL 85
T LH+A ++ +RLL D +QD G T A + A + ++++ +
Sbjct: 59 TALHLAAAYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 86 LGIRGTENIPPLYFAALFGQMG 107
L R + PL AA G
Sbjct: 117 LDARMHDGTTPLILAARLAVEG 138
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 51 DLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTAS 110
D+ D G+T AA +G ++I ++L KN + + G PL+ AA +
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 111 FLFHKSKKELITEDR--KVIFITSVDTG 136
L K ++ +D+ K F S+D G
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIDNG 124
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
+T LH+A A V+ LL D+ QD+ G T F + G D+A ++ K
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A ++ +RLL D +QD G T A + A + ++++ +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 85 LLGIRGTENIPPLYFAALFGQMG 107
L R + PL AA G
Sbjct: 84 DLDARMHDGTTPLILAARLAVEG 106
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 4 IEGLFEKDYRSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTF 63
++ L+++ + + +G T LH+A G K Q L+ + + ++D+
Sbjct: 88 VKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKFNQIPL 144
Query: 64 CFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITE 123
AA+VG++ + L+ S + + + PL+ A G A L K E
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 124 DRK 126
D K
Sbjct: 205 DNK 207
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 4 IEGLFEKDYRSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTF 63
++ L+++ + + +G T LH+A G K Q L+ + + ++D+
Sbjct: 88 VKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKFNQIPL 144
Query: 64 CFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITE 123
AA+VG++ + L+ S + + + PL+ A G A L K E
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 124 DRK 126
D K
Sbjct: 205 DNK 207
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 4 IEGLFEKDYRSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTF 63
++ L+++ + + +G T LH+A G K Q L+ + + ++D+
Sbjct: 88 VKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKFNQIPL 144
Query: 64 CFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITE 123
AA+VG++ + L+ S + + + PL+ A G A L K E
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 124 DRK 126
D K
Sbjct: 205 DNK 207
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH+A ++ +RLL D +QD G T A + A + ++++ +
Sbjct: 59 ETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 85 LLGIRGTENIPPLYFAALFGQMG 107
L R + PL AA G
Sbjct: 117 DLDARMHDGTTPLILAARLAVEG 139
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
T LH+A V+ LL + D+ D +G+T AA G ++I ++LK
Sbjct: 48 DTPLHLAARVGHLEIVEVLLK--NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 85 LLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDR--KVIFITSVDTG 136
+ T PL+ AA G + L K ++ +D+ K F S+D G
Sbjct: 106 -VNADDTIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNG 157
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 51 DLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSL--LGIRGTENIPPLYFAALFGQMGT 108
D+ +D G+T AA VG ++I ++LK + L G+ PL+ AA G +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS---TPLHLAAKRGHLEI 95
Query: 109 ASFLF 113
L
Sbjct: 96 VEVLL 100
>pdb|4DAH|A Chain A, The Crystal Structure Of Sporulation Kinase D Sensor
Domain From Bacillus Subtilis Subsp In Complex With
Pyruvate At 2.0a Resolution
pdb|4DAH|B Chain B, The Crystal Structure Of Sporulation Kinase D Sensor
Domain From Bacillus Subtilis Subsp In Complex With
Pyruvate At 2.0a Resolution
pdb|4DBJ|A Chain A, The Crystal Structure Of Sporulation Kinase D Sensor
Domain From Bacillus Subtilis Subsp
pdb|4DBJ|B Chain B, The Crystal Structure Of Sporulation Kinase D Sensor
Domain From Bacillus Subtilis Subsp
Length = 217
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 15 TICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQ--DENGNTTFCFAAAVGAV 72
TIC + + + V A Q +++ L+N + P D+ ++ +++G F A A
Sbjct: 127 TICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLSP-DVYIEVVNQDGKXIFASGQASHAE 185
Query: 73 D 73
D
Sbjct: 186 D 186
>pdb|4DAK|A Chain A, The Crystal Structure Of Sporulation Kinase D Mutant
Sensor Domain, R95a, From Bacillus Subtilis Subsp.
pdb|4DAK|B Chain B, The Crystal Structure Of Sporulation Kinase D Mutant
Sensor Domain, R95a, From Bacillus Subtilis Subsp.
pdb|4DBI|A Chain A, The Crystal Structure Of Sporulation Kinase D Mutant
Sensor Domain, R95a, From Bacillus Subtilis Subsp At
2.4a Resolution
pdb|4DBI|B Chain B, The Crystal Structure Of Sporulation Kinase D Mutant
Sensor Domain, R95a, From Bacillus Subtilis Subsp At
2.4a Resolution
Length = 217
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 15 TICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQ--DENGNTTFCFAAAVGAV 72
TIC + + + V A Q +++ L+N + P D+ ++ +++G F A A
Sbjct: 127 TICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLSP-DVYIEVVNQDGKXIFASGQASHAE 185
Query: 73 D 73
D
Sbjct: 186 D 186
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 67 AAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDRK 126
AA G +D L+K +L+ PL +A+ FG++ T FL I +
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Query: 127 VIFITSVDTGLY 138
++ TG Y
Sbjct: 70 ESALSLASTGGY 81
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 67 AAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDRK 126
AA G +D L+K +L+ PL +A+ FG++ T FL I +
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Query: 127 VIFITSVDTGLY 138
++ TG Y
Sbjct: 70 ESALSLASTGGY 81
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 28 LHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLG 87
LH A + T V+ LL F +D D+ GNT +A G L +KKN L
Sbjct: 66 LHQAATLEDTKIVKILL-FSGLDDSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXF 123
Query: 88 IRGTENIPPLYFAALFGQMGTASFLF 113
T Y A + S+
Sbjct: 124 YGKTGWKTSFYHAVXLNDVSIVSYFL 149
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 13 RSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAV 72
R + G T LH+A VQ+LL + D+ +E+GN +A G
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK--ADINAVNEHGNVPLHYACFWGQD 118
Query: 73 DIA 75
+A
Sbjct: 119 QVA 121
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 13 RSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAV 72
R + G T LH+A VQ+LL + D+ +E+GN +A G
Sbjct: 56 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQD 113
Query: 73 DIA 75
+A
Sbjct: 114 QVA 116
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 90 GTENIPPLYFAALFGQMGTASFLFHKS-KKELITEDR 125
GTEN LYF ++ Q+G A +F +S +K L+ +DR
Sbjct: 14 GTEN---LYFQSMSHQVGVAGAVFDESTRKILVVQDR 47
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 14 STICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVD 73
S I A + ++T A + + Q L ++ D+ DENG T F A +G+
Sbjct: 35 SYIAADVVSEYETPWWTAA---RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDK 91
Query: 74 IANLMLKKNPSL 85
L+ + L
Sbjct: 92 CVRLLAEAGADL 103
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 17 CAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIAN 76
C A T LH+A G + VQ LL D+ +D+ G A + G ++
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 77 LMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLF 113
L+LK + + PL+ AA ++ S L
Sbjct: 109 LLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 26 TVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLK 80
T LH+A V+ LL + D+ D NG T AA +G ++I ++LK
Sbjct: 82 TPLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 14 STICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVD 73
S I A + ++T A + + Q L ++ D+ DENG T F A +G+
Sbjct: 34 SYIAADVVSEYETPWWTAA---RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDK 90
Query: 74 IANLMLKKNPSL 85
L+ + L
Sbjct: 91 CVRLLAEAGADL 102
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPS 84
+T LH A V+ L+ + QDE+G T AA G +++ ++++ S
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKG-SNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 85 LLGIRGTEN 93
+ + T++
Sbjct: 339 VEAVDATDH 347
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 12 YRSTICAAITEGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGA 71
Y + + A +G+ T LH+A V+ LL + D+ QD+ G T F + G
Sbjct: 102 YGADVNAMDYQGY-TPLHLAAEDGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDNGN 158
Query: 72 VDIANLMLKKN 82
D+A ++ K N
Sbjct: 159 EDLAEILQKLN 169
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 1 MKEIEGLFEKDYRSTICAAIT----EGHQTVLHVATGAKQTSFVQRLLNFMDPEDLMLQD 56
+KE+E +K RS + + E TV+ G ++ S +L+ M E L
Sbjct: 64 LKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLK 123
Query: 57 ENGNTTFCFAAAVGAVDIANLMLKKNP-----SLLGIRGTENIPPLYFAALF 103
ENG T + +D ++ NP S + I T + PL +F
Sbjct: 124 ENGKTPLHIFSKRYLLDDERIVF--NPLDMKASKIAIEYTSIVVPLKVYEMF 173
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 32 TGAKQTSFVQRL-LNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLML 79
G ++ S ++ L L ++ L QD NG+T AA +G + I + +L
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKN 82
+T LH+A V+ LL + D+ QD+ G T F + G D+A ++ K N
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKN 82
+T LH+A V+ LL + D+ QD+ G T F + G D+A ++ K N
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 25 QTVLHVATGAKQTSFVQRLLNFMDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKN 82
+T LH+A V+ LL + D+ QD+ G T F + G D+A ++ K N
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
Complex
Length = 282
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 20 ITEGHQTVLHVATGAKQTSFVQRLLNF-MDPEDLMLQDENGNTTFCFAAAVG 70
+TE T LH+A + F+ LL F E L LQ++ G T AA +G
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 20 ITEGHQTVLHVATGAKQTSFVQRLLNF-MDPEDLMLQDENGNTTFCFAAAVG 70
+TE T LH+A + F+ LL F E L LQ++ G T AA +G
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,760,434
Number of Sequences: 62578
Number of extensions: 134422
Number of successful extensions: 422
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 90
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)