Your job contains 1 sequence.
>037057
MVGQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIP
SPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT
GDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG
PYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037057
(230 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2142479 - symbol:AT5G10620 species:3702 "Arabi... 624 5.5e-61 1
UNIPROTKB|P59730 - symbol:rlmH "Ribosomal RNA large subun... 222 2.2e-18 1
TIGR_CMR|BA_5708 - symbol:BA_5708 "conserved hypothetical... 222 2.2e-18 1
UNIPROTKB|Q747Q7 - symbol:rlmH "Ribosomal RNA large subun... 216 9.5e-18 1
TIGR_CMR|GSU_3208 - symbol:GSU_3208 "conserved hypothetic... 216 9.5e-18 1
UNIPROTKB|Q3AG04 - symbol:rlmH "Ribosomal RNA large subun... 214 1.6e-17 1
TIGR_CMR|CHY_0058 - symbol:CHY_0058 "conserved hypothetic... 214 1.6e-17 1
UNIPROTKB|Q724B0 - symbol:rlmH "Ribosomal RNA large subun... 202 2.9e-16 1
UNIPROTKB|Q4K5G2 - symbol:rlmH "Ribosomal RNA large subun... 187 1.1e-14 1
UNIPROTKB|Q48DL7 - symbol:rlmH "Ribosomal RNA large subun... 174 2.7e-13 1
UNIPROTKB|Q60BT8 - symbol:rlmH "Ribosomal RNA large subun... 174 2.7e-13 1
UNIPROTKB|Q87VV9 - symbol:rlmH "Ribosomal RNA large subun... 173 3.4e-13 1
UNIPROTKB|Q5LX20 - symbol:rlmH "Ribosomal RNA large subun... 157 1.7e-11 1
TIGR_CMR|SPO_0220 - symbol:SPO_0220 "conserved hypothetic... 157 1.7e-11 1
UNIPROTKB|Q9KTF1 - symbol:rlmH "Ribosomal RNA large subun... 153 4.5e-11 1
TIGR_CMR|VC_0951 - symbol:VC_0951 "conserved hypothetical... 153 4.5e-11 1
UNIPROTKB|P0A8I8 - symbol:rlmH "23S rRNA m3psi1915 methyl... 142 7.3e-10 1
UNIPROTKB|Q8EHP8 - symbol:rlmH "Ribosomal RNA large subun... 141 9.6e-10 1
TIGR_CMR|SO_1169 - symbol:SO_1169 "conserved hypothetical... 141 9.6e-10 1
UNIPROTKB|Q5HX40 - symbol:rlmH "Ribosomal RNA large subun... 130 2.0e-08 1
TIGR_CMR|CJE_0121 - symbol:CJE_0121 "conserved hypothetic... 130 2.0e-08 1
UNIPROTKB|Q0C5F9 - symbol:rlmH "Ribosomal RNA large subun... 128 3.4e-08 1
UNIPROTKB|Q484R1 - symbol:rlmH "Ribosomal RNA large subun... 104 0.00028 1
TIGR_CMR|CPS_1716 - symbol:CPS_1716 "conserved hypothetic... 104 0.00028 1
>TAIR|locus:2142479 [details] [associations]
symbol:AT5G10620 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL353995
GO:GO:0008168 GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433
KO:K00783 IPI:IPI00521023 PIR:T49977 RefSeq:NP_196624.1
UniGene:At.50445 ProteinModelPortal:Q9LXB4 SMR:Q9LXB4 STRING:Q9LXB4
PaxDb:Q9LXB4 PRIDE:Q9LXB4 EnsemblPlants:AT5G10620.1 GeneID:830927
KEGG:ath:AT5G10620 TAIR:At5g10620 InParanoid:Q9LXB4 OMA:WTILKGQ
PhylomeDB:Q9LXB4 ProtClustDB:CLSN2686411 Genevestigator:Q9LXB4
GermOnline:AT5G10620 Uniprot:Q9LXB4
Length = 193
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 127/194 (65%), Positives = 155/194 (79%)
Query: 41 MTISLYLHASAGA-YAKNSIPSPGA-GSFISY--NCKRALPIRVITVGKKRSLGVQLVVD 96
M+IS+ ++ YA S P+P G Y RALPIRVITVGKKRS GV+L+VD
Sbjct: 1 MSISVMANSHLNQPYASAS-PTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVD 59
Query: 97 EYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGS 156
EY KLK YC ED +RSNP+N DV+AQ++DE++A+M +I SDDWVV+LDE G DI S
Sbjct: 60 EYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDS 119
Query: 157 EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQL 216
EQMAEL+GDAG++GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQL
Sbjct: 120 EQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQL 179
Query: 217 YRSWTILKGQNYHH 230
YRSWTILKGQNYHH
Sbjct: 180 YRSWTILKGQNYHH 193
>UNIPROTKB|P59730 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008168
GO:GO:0031167 RefSeq:NP_847854.2 RefSeq:YP_022394.2
RefSeq:YP_031549.2 ProteinModelPortal:P59730 SMR:P59730
DNASU:1085462 EnsemblBacteria:EBBACT00000011538
EnsemblBacteria:EBBACT00000016080 EnsemblBacteria:EBBACT00000023643
GeneID:1085462 GeneID:2816106 GeneID:2852956 KEGG:ban:BA_5708
KEGG:bar:GBAA_5708 KEGG:bat:BAS5312 PATRIC:18789048 eggNOG:COG1576
HOGENOM:HOG000218433 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
BioCyc:BANT261594:GJ7F-5561-MONOMER TIGRFAMs:TIGR00246
Uniprot:P59730
Length = 159
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 52/156 (33%), Positives = 90/156 (57%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-EDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I K+ E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>TIGR_CMR|BA_5708 [details] [associations]
symbol:BA_5708 "conserved hypothetical protein TIGR00246"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008168
GO:GO:0031167 RefSeq:NP_847854.2 RefSeq:YP_022394.2
RefSeq:YP_031549.2 ProteinModelPortal:P59730 SMR:P59730
DNASU:1085462 EnsemblBacteria:EBBACT00000011538
EnsemblBacteria:EBBACT00000016080 EnsemblBacteria:EBBACT00000023643
GeneID:1085462 GeneID:2816106 GeneID:2852956 KEGG:ban:BA_5708
KEGG:bar:GBAA_5708 KEGG:bat:BAS5312 PATRIC:18789048 eggNOG:COG1576
HOGENOM:HOG000218433 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
BioCyc:BANT261594:GJ7F-5561-MONOMER TIGRFAMs:TIGR00246
Uniprot:P59730
Length = 159
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 52/156 (33%), Positives = 90/156 (57%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-EDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I K+ E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>UNIPROTKB|Q747Q7 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008168
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
OMA:NGEPYHK RefSeq:NP_954249.1 ProteinModelPortal:Q747Q7
GeneID:2688350 KEGG:gsu:GSU3208 PATRIC:22029271
ProtClustDB:CLSK829160 BioCyc:GSUL243231:GH27-3174-MONOMER
Uniprot:Q747Q7
Length = 153
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/155 (31%), Positives = 82/155 (52%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGK + V+ +DEY G+++ Y +E + R K +A E +
Sbjct: 1 MKLRVLWVGKTQEEWVRRGIDEYAGRVRRYAPLEIGEARDE-KGAA-AEAMRARECERLD 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ +++LDE G + S + A + T ++F IGG YG + R RA+
Sbjct: 59 KLVPRTSRLILLDERGDQLTSPEFAAYISRCRDTAVPELAFAIGGAYGFADEFRRRADRV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ +VL+EQ+YR++TI+ + YHH
Sbjct: 119 IALSRMTFTHQMVRVVLLEQIYRAFTIIGNEPYHH 153
>TIGR_CMR|GSU_3208 [details] [associations]
symbol:GSU_3208 "conserved hypothetical protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008168
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
OMA:NGEPYHK RefSeq:NP_954249.1 ProteinModelPortal:Q747Q7
GeneID:2688350 KEGG:gsu:GSU3208 PATRIC:22029271
ProtClustDB:CLSK829160 BioCyc:GSUL243231:GH27-3174-MONOMER
Uniprot:Q747Q7
Length = 153
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/155 (31%), Positives = 82/155 (52%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGK + V+ +DEY G+++ Y +E + R K +A E +
Sbjct: 1 MKLRVLWVGKTQEEWVRRGIDEYAGRVRRYAPLEIGEARDE-KGAA-AEAMRARECERLD 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ +++LDE G + S + A + T ++F IGG YG + R RA+
Sbjct: 59 KLVPRTSRLILLDERGDQLTSPEFAAYISRCRDTAVPELAFAIGGAYGFADEFRRRADRV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ +VL+EQ+YR++TI+ + YHH
Sbjct: 119 IALSRMTFTHQMVRVVLLEQIYRAFTIIGNEPYHH 153
>UNIPROTKB|Q3AG04 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783 OMA:NGEPYHK
TIGRFAMs:TIGR00246 RefSeq:YP_358930.1 ProteinModelPortal:Q3AG04
SMR:Q3AG04 STRING:Q3AG04 GeneID:3728284 KEGG:chy:CHY_0058
PATRIC:21273313 BioCyc:CHYD246194:GJCN-58-MONOMER Uniprot:Q3AG04
Length = 159
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 44/158 (27%), Positives = 89/158 (56%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I ++ VGK + ++ + EY+ +L Y ++ +++ + P+N +A+ +K E
Sbjct: 1 MEITIVAVGKIKERYLKEGIAEYLKRLSPYARLAVIEVDDENAPENLSPAEAEKVVKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +V+ LD G ++ SE+ A + + G S+++F IGG G ++ ER
Sbjct: 61 ERILAKITPSSFVIALDLKGKNLSSEEFAHFISEKNLYGQSKLTFIIGGSLGLSREVLER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + M HQ+ L+L+EQ+YR++ I++G+ YH
Sbjct: 121 ADFKLSFGRMTYPHQLMRLILLEQIYRAFKIIRGEPYH 158
>TIGR_CMR|CHY_0058 [details] [associations]
symbol:CHY_0058 "conserved hypothetical protein TIGR00246"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783 OMA:NGEPYHK
TIGRFAMs:TIGR00246 RefSeq:YP_358930.1 ProteinModelPortal:Q3AG04
SMR:Q3AG04 STRING:Q3AG04 GeneID:3728284 KEGG:chy:CHY_0058
PATRIC:21273313 BioCyc:CHYD246194:GJCN-58-MONOMER Uniprot:Q3AG04
Length = 159
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 44/158 (27%), Positives = 89/158 (56%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I ++ VGK + ++ + EY+ +L Y ++ +++ + P+N +A+ +K E
Sbjct: 1 MEITIVAVGKIKERYLKEGIAEYLKRLSPYARLAVIEVDDENAPENLSPAEAEKVVKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +V+ LD G ++ SE+ A + + G S+++F IGG G ++ ER
Sbjct: 61 ERILAKITPSSFVIALDLKGKNLSSEEFAHFISEKNLYGQSKLTFIIGGSLGLSREVLER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + M HQ+ L+L+EQ+YR++ I++G+ YH
Sbjct: 121 ADFKLSFGRMTYPHQLMRLILLEQIYRAFKIIRGEPYH 158
>UNIPROTKB|Q724B0 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE017262
GenomeReviews:AE017262_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783 OMA:NGEPYHK
ProtClustDB:PRK00103 TIGRFAMs:TIGR00246 RefSeq:YP_012924.1
ProteinModelPortal:Q724B0 SMR:Q724B0 STRING:Q724B0 GeneID:2799711
KEGG:lmf:LMOf2365_0314 PATRIC:20321839 Uniprot:Q724B0
Length = 159
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 50/156 (32%), Positives = 87/156 (55%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKA-QIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>UNIPROTKB|Q4K5G2 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 HOGENOM:HOG000218434 RefSeq:YP_262521.1
ProteinModelPortal:Q4K5G2 SMR:Q4K5G2 STRING:Q4K5G2 GeneID:3479845
KEGG:pfl:PFL_5453 PATRIC:19880393
BioCyc:PFLU220664:GIX8-5490-MONOMER Uniprot:Q4K5G2
Length = 155
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/155 (31%), Positives = 83/155 (53%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
+R+I VG + V+ EY +L +E ++ L + KN DV I+ E A++
Sbjct: 3 LRLIAVGSRMPKWVEEGWHEYAKRLPSELALELVEIPLNTRGKNA-DVARFIRQEGEAML 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMA-ELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ ++ +V L+ +G +EQ+A EL D + ++F +GGP G P++ RA+
Sbjct: 62 AKVGHNERIVTLEVHGKPWSTEQLAVEL--DRWRLDSRTVNFMVGGPEGLAPEVCARADQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + +++ EQLYR+WT+L G YH
Sbjct: 120 RWSLSPLTLPHPLVRILIGEQLYRAWTVLSGHPYH 154
>UNIPROTKB|Q48DL7 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:CP000058
GenomeReviews:CP000058_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 HOGENOM:HOG000218434 RefSeq:YP_276524.1
ProteinModelPortal:Q48DL7 SMR:Q48DL7 STRING:Q48DL7 GeneID:3556232
KEGG:psp:PSPPH_4408 PATRIC:19978307 Uniprot:Q48DL7
Length = 155
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 46/155 (29%), Positives = 80/155 (51%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
+R+I VG + V+ EY ++ +E ++ L + KN DV I+ E A++
Sbjct: 3 LRLIAVGSRMPKWVEEGWHEYAKRMPSELALELVEIPLNTRGKNA-DVARFIRQEGEAML 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMA-ELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + +V L+ +G +EQ+A EL D A ++ +GGP G P++ R+
Sbjct: 62 AKVQPGERIVTLEVHGKPWSTEQLAVEL--DRWRLDARTVNLMVGGPEGLAPEVCARSEQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + +++ EQ+YR+WT+L G YH
Sbjct: 120 RWSLSPLTLPHPLVRILIGEQMYRAWTVLSGHPYH 154
>UNIPROTKB|Q60BT8 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 GO:GO:0008168
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 HOGENOM:HOG000218434 RefSeq:YP_112908.1
ProteinModelPortal:Q60BT8 SMR:Q60BT8 GeneID:3103864
KEGG:mca:MCA0377 PATRIC:22604499 Uniprot:Q60BT8
Length = 155
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKDEDMAV 134
+ + ++ VG++ V +EY +L C + ++ + D++ + DE +
Sbjct: 1 MQLNLVCVGERMPSWVNEGYEEYARRLPRECALMLREIAPGKRTRNCDIQRILADEGQRM 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + + +V LD G D + ++AE++ G I+ +GGP G R+RA
Sbjct: 61 LAAVGGNAHIVTLDVGGKDWSTRELAEVLARWLREGRD-IALLVGGPDGLSDACRQRAAE 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S LS M H + +++ EQLYR+WT+L YH
Sbjct: 120 SWSLSRMTFPHPLVRVIVAEQLYRAWTLLNNHPYH 154
>UNIPROTKB|Q87VV9 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE016853
GenomeReviews:AE016853_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 HOGENOM:HOG000218434 RefSeq:NP_794560.1
ProteinModelPortal:Q87VV9 SMR:Q87VV9 GeneID:1186509
KEGG:pst:PSPTO_4826 PATRIC:20001160
BioCyc:PSYR223283:GJIX-4892-MONOMER Uniprot:Q87VV9
Length = 155
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 46/155 (29%), Positives = 79/155 (50%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
+R+I VG + V+ EY ++ +E ++ L + KN DV I+ E A++
Sbjct: 3 LRLIAVGSRMPKWVEEGWHEYAKRMPSELALELVEIPLNTRGKNA-DVARFIRQEGEAML 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMA-ELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + +V L+ G +EQ+A EL D A ++ +GGP G P++ R+
Sbjct: 62 AKVQPGERIVTLEVQGKPWSTEQLAVEL--DRWRLDARTVNLMVGGPEGLAPEVCARSEQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + +++ EQ+YR+WT+L G YH
Sbjct: 120 RWSLSPLTLPHPLVRILIGEQMYRAWTVLSGHPYH 154
>UNIPROTKB|Q5LX20 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008168
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
ProtClustDB:PRK00103 OMA:TWPHQLV RefSeq:YP_165489.1
ProteinModelPortal:Q5LX20 GeneID:3196019 KEGG:sil:SPO0220
PATRIC:23373689 Uniprot:Q5LX20
Length = 156
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 43/153 (28%), Positives = 72/153 (47%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVK-AQIKDEDMAVMN 136
+ ++ VG+ R+ + ++D+Y+ + + L + D K A + E +
Sbjct: 3 VSILAVGRLRTGPEKSLIDDYLTRFDRTGRALGLG-PARVVEVEDKKNAGMGAEAALLRK 61
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ + + LDE G + S A+ M TG ++ IGG G P +R A+ SI
Sbjct: 62 ALPAGAVLCTLDERGKQLSSPDFADRMAGWRDTGRQDLALVIGGADGIDPSLRAEADFSI 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+MV H + ++L EQLYR+ TIL G YH
Sbjct: 122 SFGAMVWPHMLVRVMLAEQLYRAATILAGSPYH 154
>TIGR_CMR|SPO_0220 [details] [associations]
symbol:SPO_0220 "conserved hypothetical protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008168
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
ProtClustDB:PRK00103 OMA:TWPHQLV RefSeq:YP_165489.1
ProteinModelPortal:Q5LX20 GeneID:3196019 KEGG:sil:SPO0220
PATRIC:23373689 Uniprot:Q5LX20
Length = 156
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 43/153 (28%), Positives = 72/153 (47%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVK-AQIKDEDMAVMN 136
+ ++ VG+ R+ + ++D+Y+ + + L + D K A + E +
Sbjct: 3 VSILAVGRLRTGPEKSLIDDYLTRFDRTGRALGLG-PARVVEVEDKKNAGMGAEAALLRK 61
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ + + LDE G + S A+ M TG ++ IGG G P +R A+ SI
Sbjct: 62 ALPAGAVLCTLDERGKQLSSPDFADRMAGWRDTGRQDLALVIGGADGIDPSLRAEADFSI 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+MV H + ++L EQLYR+ TIL G YH
Sbjct: 122 SFGAMVWPHMLVRVMLAEQLYRAATILAGSPYH 154
>UNIPROTKB|Q9KTF1 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 PIR:B82260 RefSeq:NP_230598.1
ProteinModelPortal:Q9KTF1 SMR:Q9KTF1 DNASU:2614171 GeneID:2614171
KEGG:vch:VC0951 PATRIC:20081004 Uniprot:Q9KTF1
Length = 156
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 40/155 (25%), Positives = 75/155 (48%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAV 134
+ I++I VG K V+ EY + + +E +++ + + D+ ++ E A+
Sbjct: 1 MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMPLELVEITAGKRGKNADIARILQKEGEAM 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + + +V LD G +E++A + ++ +S IGGP G P + A+
Sbjct: 61 LAAVPKGNRIVTLDIPGKRWDTEELAVQL-ESWKLDGRDVSILIGGPEGLAPACKAAADQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S LS + L H + +V+ E LYR+W+I YH
Sbjct: 120 SWSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYH 154
>TIGR_CMR|VC_0951 [details] [associations]
symbol:VC_0951 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003742
InterPro:IPR016051 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008168
GO:GO:0031167 eggNOG:COG1576 KO:K00783 OMA:NGEPYHK
ProtClustDB:PRK00103 TIGRFAMs:TIGR00246 PIR:B82260
RefSeq:NP_230598.1 ProteinModelPortal:Q9KTF1 SMR:Q9KTF1
DNASU:2614171 GeneID:2614171 KEGG:vch:VC0951 PATRIC:20081004
Uniprot:Q9KTF1
Length = 156
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 40/155 (25%), Positives = 75/155 (48%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAV 134
+ I++I VG K V+ EY + + +E +++ + + D+ ++ E A+
Sbjct: 1 MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMPLELVEITAGKRGKNADIARILQKEGEAM 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + + +V LD G +E++A + ++ +S IGGP G P + A+
Sbjct: 61 LAAVPKGNRIVTLDIPGKRWDTEELAVQL-ESWKLDGRDVSILIGGPEGLAPACKAAADQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S LS + L H + +V+ E LYR+W+I YH
Sbjct: 120 SWSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYH 154
>UNIPROTKB|P0A8I8 [details] [associations]
symbol:rlmH "23S rRNA m3psi1915 methyltransferase"
species:83333 "Escherichia coli K-12" [GO:0043022 "ribosome
binding" evidence=NAS] [GO:0031167 "rRNA methylation"
evidence=IDA;IMP] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0070475 "rRNA base methylation" evidence=IMP] [GO:0070038 "rRNA
(pseudouridine-N3-)-methyltransferase activity" evidence=IMP;IDA]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 GO:GO:0042803
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0043022 EMBL:U82598 EMBL:X04516
GO:GO:0070475 eggNOG:COG1576 KO:K00783 OMA:NGEPYHK
ProtClustDB:PRK00103 TIGRFAMs:TIGR00246 HOGENOM:HOG000218434
PIR:B24995 RefSeq:NP_415169.1 RefSeq:YP_488927.1 PDB:1NS5
PDBsum:1NS5 ProteinModelPortal:P0A8I8 SMR:P0A8I8 IntAct:P0A8I8
MINT:MINT-1251153 PRIDE:P0A8I8 EnsemblBacteria:EBESCT00000004817
EnsemblBacteria:EBESCT00000017178 GeneID:12930485 GeneID:945239
KEGG:ecj:Y75_p0626 KEGG:eco:b0636 PATRIC:32116455 EchoBASE:EB1234
EcoGene:EG11254 BioCyc:EcoCyc:EG11254-MONOMER
BioCyc:ECOL316407:JW0631-MONOMER BioCyc:MetaCyc:EG11254-MONOMER
EvolutionaryTrace:P0A8I8 Genevestigator:P0A8I8 GO:GO:0070038
Uniprot:P0A8I8
Length = 155
Score = 142 (55.0 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 40/155 (25%), Positives = 73/155 (47%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAV 134
+ ++++ VG K VQ EY+ + E +++ + + D+K +I D++
Sbjct: 1 MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIK-RILDKEGEQ 59
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
M + + +V LD G + Q+A + + +S IGGP G P + A
Sbjct: 60 MLAAAGKNRIVTLDIPGKPWDTPQLAAEL-ERWKLDGRDVSLLIGGPEGLSPACKAAAEQ 118
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S LS++ L H + +++ E LYR+W+I YH
Sbjct: 119 SWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYH 153
>UNIPROTKB|Q8EHP8 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 HOGENOM:HOG000218434 RefSeq:NP_716794.1
ProteinModelPortal:Q8EHP8 SMR:Q8EHP8 GeneID:1168998
KEGG:son:SO_1169 PATRIC:23521978 Uniprot:Q8EHP8
Length = 156
Score = 141 (54.7 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 38/155 (24%), Positives = 74/155 (47%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAV 134
+ +++I VG + V +EY + +E +++ + + D+ ++ E +
Sbjct: 1 MKLQLIAVGTRMPDWVTRGFEEYQRRFPRDMALELIEIPAGKRGKNADIVRILQKEGEQM 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I + +V LD G + + ++A M G +S +GGP G P +E A+
Sbjct: 61 LAAIPKGNHIVTLDLPGKNWTTPELASAMNKWQLDGRD-VSLLVGGPEGLAPACKEAAHQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S LS++ L H + +V+ E LYR+W++ YH
Sbjct: 120 SWCLSALTLPHPLVRIVVAESLYRAWSVNTNHPYH 154
>TIGR_CMR|SO_1169 [details] [associations]
symbol:SO_1169 "conserved hypothetical protein TIGR00246"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 HOGENOM:HOG000218434 RefSeq:NP_716794.1
ProteinModelPortal:Q8EHP8 SMR:Q8EHP8 GeneID:1168998
KEGG:son:SO_1169 PATRIC:23521978 Uniprot:Q8EHP8
Length = 156
Score = 141 (54.7 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 38/155 (24%), Positives = 74/155 (47%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAV 134
+ +++I VG + V +EY + +E +++ + + D+ ++ E +
Sbjct: 1 MKLQLIAVGTRMPDWVTRGFEEYQRRFPRDMALELIEIPAGKRGKNADIVRILQKEGEQM 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I + +V LD G + + ++A M G +S +GGP G P +E A+
Sbjct: 61 LAAIPKGNHIVTLDLPGKNWTTPELASAMNKWQLDGRD-VSLLVGGPEGLAPACKEAAHQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S LS++ L H + +V+ E LYR+W++ YH
Sbjct: 120 SWCLSALTLPHPLVRIVVAESLYRAWSVNTNHPYH 154
>UNIPROTKB|Q5HX40 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008168
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
RefSeq:YP_178145.1 ProteinModelPortal:Q5HX40 STRING:Q5HX40
GeneID:3230884 KEGG:cjr:CJE0121 PATRIC:20041949 OMA:RFDCELE
ProtClustDB:CLSK878649 BioCyc:CJEJ195099:GJC0-125-MONOMER
Uniprot:Q5HX40
Length = 153
Score = 130 (50.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 143 WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV 202
+ + LDE G D+ S + A+L+ D + +SF IGG YG + + + + LS +
Sbjct: 71 YCIALDEKGKDLTSIEFAKLIQDK-----NELSFFIGGAYGLREEFNQSLDFRLSLSKLT 125
Query: 203 LNHQIALLVLVEQLYRSWTILKGQNYH 229
L HQ +L+EQ+YR++ I YH
Sbjct: 126 LAHQFVKTLLLEQIYRAFCINNNHPYH 152
>TIGR_CMR|CJE_0121 [details] [associations]
symbol:CJE_0121 "conserved hypothetical protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008168
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
RefSeq:YP_178145.1 ProteinModelPortal:Q5HX40 STRING:Q5HX40
GeneID:3230884 KEGG:cjr:CJE0121 PATRIC:20041949 OMA:RFDCELE
ProtClustDB:CLSK878649 BioCyc:CJEJ195099:GJC0-125-MONOMER
Uniprot:Q5HX40
Length = 153
Score = 130 (50.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 143 WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV 202
+ + LDE G D+ S + A+L+ D + +SF IGG YG + + + + LS +
Sbjct: 71 YCIALDEKGKDLTSIEFAKLIQDK-----NELSFFIGGAYGLREEFNQSLDFRLSLSKLT 125
Query: 203 LNHQIALLVLVEQLYRSWTILKGQNYH 229
L HQ +L+EQ+YR++ I YH
Sbjct: 126 LAHQFVKTLLLEQIYRAFCINNNHPYH 152
>UNIPROTKB|Q0C5F9 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 Pfam:PF02590 PIRSF:PIRSF004505 HAMAP:MF_00658
GO:GO:0005737 GO:GO:0008168 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0006364 eggNOG:COG1576 HOGENOM:HOG000218433 KO:K00783
RefSeq:YP_759034.1 ProteinModelPortal:Q0C5F9 STRING:Q0C5F9
GeneID:4287210 KEGG:hne:HNE_0304 PATRIC:32213400 OMA:TWPHQLV
ProtClustDB:CLSK2531652 BioCyc:HNEP228405:GI69-348-MONOMER
Uniprot:Q0C5F9
Length = 154
Score = 128 (50.1 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 29/86 (33%), Positives = 42/86 (48%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
++ LDE G ++ SE A + G F IGG G+ P +R A ++
Sbjct: 67 IIRLDEGGENLTSEAFASRLSRWRDDGERDTCFLIGGAEGYAPDVRAAAPQTLAFGVQTW 126
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
H++ +L EQLYR+ TIL G YH
Sbjct: 127 PHRLVRAMLAEQLYRAMTILAGTPYH 152
>UNIPROTKB|Q484R1 [details] [associations]
symbol:rlmH "Ribosomal RNA large subunit methyltransferase
H" species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 RefSeq:YP_268454.1 ProteinModelPortal:Q484R1
SMR:Q484R1 STRING:Q484R1 GeneID:3522087 KEGG:cps:CPS_1716
PATRIC:21466603 HOGENOM:HOG000218434
BioCyc:CPSY167879:GI48-1793-MONOMER Uniprot:Q484R1
Length = 156
Score = 104 (41.7 bits), Expect = 0.00028, P = 0.00028
Identities = 26/112 (23%), Positives = 52/112 (46%)
Query: 118 KNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFC 177
KN D+ + E ++ I + +V L+ G + ++A+ + G ++
Sbjct: 45 KNA-DISRILAKEGELLLAAIPKGNRIVTLEVEGQSWTTPKLAKQLEQWQLDGRD-VALL 102
Query: 178 IGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+GGP G P + + LS++ L H + +++ E LYR+W++ YH
Sbjct: 103 VGGPEGLAPACIKASEQKWSLSALTLPHPMVRILIAESLYRAWSVNTNHPYH 154
>TIGR_CMR|CPS_1716 [details] [associations]
symbol:CPS_1716 "conserved hypothetical protein TIGR00246"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003742 InterPro:IPR016051 Pfam:PF02590
PIRSF:PIRSF004505 HAMAP:MF_00658 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008168 GO:GO:0031167
eggNOG:COG1576 KO:K00783 OMA:NGEPYHK ProtClustDB:PRK00103
TIGRFAMs:TIGR00246 RefSeq:YP_268454.1 ProteinModelPortal:Q484R1
SMR:Q484R1 STRING:Q484R1 GeneID:3522087 KEGG:cps:CPS_1716
PATRIC:21466603 HOGENOM:HOG000218434
BioCyc:CPSY167879:GI48-1793-MONOMER Uniprot:Q484R1
Length = 156
Score = 104 (41.7 bits), Expect = 0.00028, P = 0.00028
Identities = 26/112 (23%), Positives = 52/112 (46%)
Query: 118 KNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFC 177
KN D+ + E ++ I + +V L+ G + ++A+ + G ++
Sbjct: 45 KNA-DISRILAKEGELLLAAIPKGNRIVTLEVEGQSWTTPKLAKQLEQWQLDGRD-VALL 102
Query: 178 IGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+GGP G P + + LS++ L H + +++ E LYR+W++ YH
Sbjct: 103 VGGPEGLAPACIKASEQKWSLSALTLPHPMVRILIAESLYRAWSVNTNHPYH 154
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 230 230 0.00083 113 3 11 22 0.39 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 607 (65 KB)
Total size of DFA: 186 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.24u 0.18s 19.42t Elapsed: 00:00:01
Total cpu time: 19.24u 0.18s 19.42t Elapsed: 00:00:01
Start: Fri May 10 20:16:32 2013 End: Fri May 10 20:16:33 2013