BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037057
(230 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224121436|ref|XP_002330827.1| predicted protein [Populus trichocarpa]
gi|222872629|gb|EEF09760.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 132/186 (70%), Positives = 150/186 (80%), Gaps = 2/186 (1%)
Query: 47 LHASAGAYAKNSIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKY 104
+ A A PS G G Y + RALPIR+ITVGKKRS GVQL+V+EY KLK
Sbjct: 4 ISACASTSCYTPPPSGGEGRLCKYTGQSVRALPIRIITVGKKRSAGVQLLVEEYTNKLKN 63
Query: 105 YCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMG 164
YC + DL +RSNP+N D KAQ+ DED AVMN+I SDDWVV+LDE G DIGSEQMAEL+G
Sbjct: 64 YCSLHDLPIRSNPRNARDEKAQVDDEDKAVMNLIRSDDWVVLLDERGRDIGSEQMAELIG 123
Query: 165 DAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILK 224
DAG+TGASR+SFCIGGPYGHG ++R+RANISI+LSSMVLNHQIALLVLVEQLYRSWTILK
Sbjct: 124 DAGNTGASRLSFCIGGPYGHGQQIRKRANISIRLSSMVLNHQIALLVLVEQLYRSWTILK 183
Query: 225 GQNYHH 230
GQNYHH
Sbjct: 184 GQNYHH 189
>gi|356554389|ref|XP_003545529.1| PREDICTED: putative RNA methyltransferase At5g10620-like [Glycine
max]
Length = 172
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 126/162 (77%), Positives = 145/162 (89%), Gaps = 1/162 (0%)
Query: 70 YNCK-RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIK 128
YN + RALPIR+++VGKKRS G+QL+VDEY+ KL+YYC VED+Q+R NP+N D +AQ+
Sbjct: 11 YNGRIRALPIRILSVGKKRSRGLQLMVDEYVDKLRYYCSVEDVQIRPNPQNARDQRAQVD 70
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
ED AVMN+I SDDWVVMLDE G DIGSEQMAEL+GDAG+TGASR+SFCIGGPYGHG KM
Sbjct: 71 AEDEAVMNLIRSDDWVVMLDERGQDIGSEQMAELVGDAGNTGASRLSFCIGGPYGHGRKM 130
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RERAN+SIKLSS+VLNHQIALLVLVEQLYRSWTILKGQ YHH
Sbjct: 131 RERANLSIKLSSLVLNHQIALLVLVEQLYRSWTILKGQKYHH 172
>gi|356561909|ref|XP_003549219.1| PREDICTED: putative RNA methyltransferase At5g10620-like [Glycine
max]
Length = 183
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/172 (72%), Positives = 144/172 (83%), Gaps = 2/172 (1%)
Query: 61 SPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK 118
+P G Y + RALPIR+++VGKKRS G+QL+VDEY KL+YYC VED Q+R NP+
Sbjct: 12 NPAQGRKCKYEGQSVRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCNVEDAQIRPNPR 71
Query: 119 NTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCI 178
N D +AQ+ ED AVMN+I SDDWVVMLDE G DI SEQMAEL+GDAG+TGASR+SFCI
Sbjct: 72 NARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAGNTGASRLSFCI 131
Query: 179 GGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
GGPYGHG KMR+RAN+SIKLSS+VLNHQIALLVL+EQLYRSWTILKGQ YHH
Sbjct: 132 GGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
>gi|388501268|gb|AFK38700.1| unknown [Lotus japonicus]
Length = 194
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 141/157 (89%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ALPIR+++VGKKRS G+QL+VD+YI K+KYYC VED+Q+R NP+N D +AQ+ DED A
Sbjct: 38 KALPIRILSVGKKRSRGLQLLVDDYIEKIKYYCSVEDVQIRPNPRNARDHRAQVDDEDTA 97
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
VMNII SDDWVVMLDE G DIGSEQMAEL+G A +TGASR+SFCIGGPYGHG K+RERAN
Sbjct: 98 VMNIIRSDDWVVMLDERGQDIGSEQMAELVGGASNTGASRLSFCIGGPYGHGRKIRERAN 157
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
ISIKLSS+VLNHQIALLVL+EQLYRSWTIL+GQ YHH
Sbjct: 158 ISIKLSSLVLNHQIALLVLMEQLYRSWTILRGQKYHH 194
>gi|359476001|ref|XP_002280753.2| PREDICTED: putative RNA methyltransferase At5g10620 [Vitis
vinifera]
Length = 217
Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 119/157 (75%), Positives = 141/157 (89%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R +PIR++TVGKKRS GVQL+VDEYI KLKYYC +D+Q+RSNPKN DVKAQ+++ED A
Sbjct: 61 RPVPIRILTVGKKRSRGVQLIVDEYIEKLKYYCSPDDIQIRSNPKNARDVKAQVENEDTA 120
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
VM +I DDWVVMLDE+GLD+GS QMAEL+ D G+TGA+R+SFCIGGPYGHG ++R+RAN
Sbjct: 121 VMGLIRPDDWVVMLDEHGLDLGSIQMAELLRDVGNTGAARLSFCIGGPYGHGEQLRKRAN 180
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
ISIKLSSMVLNHQIALLVL+EQLYR+WTILKGQ YHH
Sbjct: 181 ISIKLSSMVLNHQIALLVLMEQLYRAWTILKGQKYHH 217
>gi|449437080|ref|XP_004136320.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 2
[Cucumis sativus]
gi|449505515|ref|XP_004162494.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 2
[Cucumis sativus]
Length = 182
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 1/181 (0%)
Query: 50 SAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE 109
+A + A ++ PS G + + RA+PIRV+TVGKKRS GVQL+VDEYI KLK YC VE
Sbjct: 3 TALSTALSASPSGGRCKYTGQSV-RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVE 61
Query: 110 DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGST 169
D+QLRSNP+N D KAQ+ DED+AV+N++ DDWVVMLDENG ++ SE MAEL+ DAG+T
Sbjct: 62 DVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGNT 121
Query: 170 GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
ASR+SFCIGGPYGHG ++R+RAN+SIKLSSMVLNHQIALLVL+EQLYRSWTILKGQ YH
Sbjct: 122 SASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYH 181
Query: 230 H 230
H
Sbjct: 182 H 182
>gi|296081778|emb|CBI20783.3| unnamed protein product [Vitis vinifera]
Length = 180
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 119/157 (75%), Positives = 141/157 (89%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R +PIR++TVGKKRS GVQL+VDEYI KLKYYC +D+Q+RSNPKN DVKAQ+++ED A
Sbjct: 24 RPVPIRILTVGKKRSRGVQLIVDEYIEKLKYYCSPDDIQIRSNPKNARDVKAQVENEDTA 83
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
VM +I DDWVVMLDE+GLD+GS QMAEL+ D G+TGA+R+SFCIGGPYGHG ++R+RAN
Sbjct: 84 VMGLIRPDDWVVMLDEHGLDLGSIQMAELLRDVGNTGAARLSFCIGGPYGHGEQLRKRAN 143
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
ISIKLSSMVLNHQIALLVL+EQLYR+WTILKGQ YHH
Sbjct: 144 ISIKLSSMVLNHQIALLVLMEQLYRAWTILKGQKYHH 180
>gi|297811167|ref|XP_002873467.1| hypothetical protein ARALYDRAFT_487896 [Arabidopsis lyrata subsp.
lyrata]
gi|297319304|gb|EFH49726.1| hypothetical protein ARALYDRAFT_487896 [Arabidopsis lyrata subsp.
lyrata]
Length = 188
Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 146/179 (81%), Gaps = 2/179 (1%)
Query: 54 YAKNSIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL 111
YA S S G Y + RALPIRVITVGKKRS GV+L+VDEY KLK YC ED
Sbjct: 10 YASASPTSQETGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKTKLKPYCSFEDS 69
Query: 112 QLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGA 171
+RSNP+N DV+AQ++DE++A+M +I SDDWVV+LDE G DI SE MAEL+GDAG++GA
Sbjct: 70 LVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEAMAELIGDAGNSGA 129
Query: 172 SRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLYRSWTILKGQNYHH
Sbjct: 130 SRISFCIGGAYGHGRQVRKRANVTIRLSSMVLNHQIALVVLIEQLYRSWTILKGQNYHH 188
>gi|15238214|ref|NP_196624.1| putative RNA methyltransferase [Arabidopsis thaliana]
gi|32171918|sp|Q9LXB4.1|Y5620_ARATH RecName: Full=Putative RNA methyltransferase At5g10620
gi|7671441|emb|CAB89381.1| putative protein [Arabidopsis thaliana]
gi|332004189|gb|AED91572.1| putative RNA methyltransferase [Arabidopsis thaliana]
Length = 193
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 123/193 (63%), Positives = 154/193 (79%), Gaps = 3/193 (1%)
Query: 41 MTISLYLHASAGAYAKNSIPSP---GAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDE 97
M+IS+ ++ ++ P+P G + RALPIRVITVGKKRS GV+L+VDE
Sbjct: 1 MSISVMANSHLNQPYASASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDE 60
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157
Y KLK YC ED +RSNP+N DV+AQ++DE++A+M +I SDDWVV+LDE G DI SE
Sbjct: 61 YKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSE 120
Query: 158 QMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLY 217
QMAEL+GDAG++GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLY
Sbjct: 121 QMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLY 180
Query: 218 RSWTILKGQNYHH 230
RSWTILKGQNYHH
Sbjct: 181 RSWTILKGQNYHH 193
>gi|449437078|ref|XP_004136319.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 1
[Cucumis sativus]
gi|449505511|ref|XP_004162493.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 1
[Cucumis sativus]
Length = 202
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/201 (62%), Positives = 151/201 (75%), Gaps = 21/201 (10%)
Query: 50 SAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE 109
+A + A ++ PS G + + RA+PIRV+TVGKKRS GVQL+VDEYI KLK YC VE
Sbjct: 3 TALSTALSASPSGGRCKYTGQSV-RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVE 61
Query: 110 DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGST 169
D+QLRSNP+N D KAQ+ DED+AV+N++ DDWVVMLDENG ++ SE MAEL+ DAG+T
Sbjct: 62 DVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGNT 121
Query: 170 --------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIAL 209
ASR+SFCIGGPYGHG ++R+RAN+SIKLSSMVLNHQIAL
Sbjct: 122 VSSCHHAPIVSGNNFNRAIGSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIAL 181
Query: 210 LVLVEQLYRSWTILKGQNYHH 230
LVL+EQLYRSWTILKGQ YHH
Sbjct: 182 LVLMEQLYRSWTILKGQKYHH 202
>gi|255574151|ref|XP_002527991.1| conserved hypothetical protein [Ricinus communis]
gi|223532617|gb|EEF34403.1| conserved hypothetical protein [Ricinus communis]
Length = 254
Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 117/172 (68%), Positives = 145/172 (84%), Gaps = 2/172 (1%)
Query: 54 YAKNSIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL 111
Y+ ++ P+P +G Y+ + R LPIR+ITVGKK S GVQL+VDEYIGKLK+YC V+D+
Sbjct: 9 YSSSAPPAPRSGWQCKYSGQAVRTLPIRIITVGKKPSPGVQLLVDEYIGKLKHYCSVDDI 68
Query: 112 QLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGA 171
QLRSNP+N DV+AQ+ DEDMA MN++ SDDWVVMLDE+GLDI SEQMAEL+ +AG+TGA
Sbjct: 69 QLRSNPRNARDVRAQVDDEDMAAMNLMKSDDWVVMLDEHGLDIRSEQMAELVAEAGNTGA 128
Query: 172 SRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTIL 223
SR+SFCIGGPYGHG ++R RAN SI+LSSMVLNHQIAL+VLVEQLY T++
Sbjct: 129 SRLSFCIGGPYGHGQRIRTRANKSIRLSSMVLNHQIALVVLVEQLYSFATLM 180
>gi|195649513|gb|ACG44224.1| hypothetical protein [Zea mays]
gi|414585542|tpg|DAA36113.1| TPA: hypothetical protein ZEAMMB73_824445 [Zea mays]
Length = 197
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/183 (59%), Positives = 149/183 (81%), Gaps = 5/183 (2%)
Query: 53 AYAKN---SIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK 107
+++KN S PSP AG Y+ + +A+P+R++TVGKKRS G QL+V+EY KL +YC+
Sbjct: 15 SFSKNRGASTPSPLAGRRSKYSGQSVKAMPMRLLTVGKKRSRGTQLLVEEYKEKLGHYCE 74
Query: 108 VEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAG 167
ED +RSNPK T DVK Q++ ED A+M + SDD+VV+LDENG D+ SEQ+A+L+GDAG
Sbjct: 75 FEDTLIRSNPKLTSDVKVQVEAEDTAMMQQLKSDDFVVVLDENGKDVISEQIADLIGDAG 134
Query: 168 STGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQN 227
+TG+SR++FCIGGPYG G ++RERA+ +I+LSS+VLNHQ+AL+VL+EQLYR+WTI+KGQ
Sbjct: 135 NTGSSRLTFCIGGPYGLGLQVRERADATIRLSSLVLNHQVALIVLMEQLYRAWTIIKGQK 194
Query: 228 YHH 230
YHH
Sbjct: 195 YHH 197
>gi|147866139|emb|CAN79843.1| hypothetical protein VITISV_014520 [Vitis vinifera]
Length = 805
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 130/153 (84%), Gaps = 8/153 (5%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R +PIR++TVGKKRS GVQL+VDEYI KLKYYC +D+Q+RSNPKN DVKAQ+++ED A
Sbjct: 24 RPVPIRILTVGKKRSRGVQLIVDEYIEKLKYYCSADDIQIRSNPKNARDVKAQVENEDTA 83
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGST--------GASRISFCIGGPYGHG 185
VM +I DDWVVMLDE+GLD+GS QMAEL+ D G+T GA+R+SFCIGGPYGHG
Sbjct: 84 VMGLIRPDDWVVMLDEHGLDLGSIQMAELLRDVGNTLFITSVSQGAARLSFCIGGPYGHG 143
Query: 186 PKMRERANISIKLSSMVLNHQIALLVLVEQLYR 218
++R+RANISIKLSSMVLNHQIALLVL+EQLYR
Sbjct: 144 EQLRKRANISIKLSSMVLNHQIALLVLMEQLYR 176
>gi|115460408|ref|NP_001053804.1| Os04g0606900 [Oryza sativa Japonica Group]
gi|113565375|dbj|BAF15718.1| Os04g0606900 [Oryza sativa Japonica Group]
gi|116309737|emb|CAH66781.1| OSIGBa0113I13.7 [Oryza sativa Indica Group]
gi|215765663|dbj|BAG87360.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768576|dbj|BAH00805.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195523|gb|EEC77950.1| hypothetical protein OsI_17303 [Oryza sativa Indica Group]
gi|222629505|gb|EEE61637.1| hypothetical protein OsJ_16081 [Oryza sativa Japonica Group]
Length = 196
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 144/181 (79%), Gaps = 3/181 (1%)
Query: 50 SAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE 109
S GA A +S P S S RA+P+RV+TVGKKRS G QL+V+EY KL YYC +E
Sbjct: 19 SRGAPAPSS---PDKRSKYSAQSVRAMPMRVLTVGKKRSRGAQLIVEEYKEKLGYYCDIE 75
Query: 110 DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGST 169
D ++SNPK T DVK Q++ EDMA+M + +D+VV+LDENG D+ SEQ+A+L+GDAG+T
Sbjct: 76 DTLIKSNPKLTSDVKVQVEAEDMAMMLQLKPEDFVVVLDENGKDVTSEQVADLVGDAGNT 135
Query: 170 GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
G+SR++FCIGGPYG G ++RERA+ +I+LSSMVLNHQ+AL+VL+EQLYR+WTI+KGQ YH
Sbjct: 136 GSSRLTFCIGGPYGFGLQVRERADATIRLSSMVLNHQVALIVLMEQLYRAWTIIKGQKYH 195
Query: 230 H 230
H
Sbjct: 196 H 196
>gi|242077104|ref|XP_002448488.1| hypothetical protein SORBIDRAFT_06g027860 [Sorghum bicolor]
gi|241939671|gb|EES12816.1| hypothetical protein SORBIDRAFT_06g027860 [Sorghum bicolor]
Length = 199
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 141/176 (80%)
Query: 55 AKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR 114
A S PS G S S +A+P+R++TVGKKRS G QL+V+EY KL YYC ED +R
Sbjct: 24 ASASAPSLGKRSKYSGQSVKAMPMRLLTVGKKRSRGTQLLVEEYKEKLGYYCDFEDTLIR 83
Query: 115 SNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRI 174
SNPK T DVK Q++ ED A+M + SDD+VV+LDENG D+ SEQ+A+L+GDAG+TG+SR+
Sbjct: 84 SNPKLTSDVKVQVEAEDTAMMQQLKSDDFVVVLDENGKDVISEQIADLIGDAGNTGSSRL 143
Query: 175 SFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+FCIGGPYG G ++R+RA+ +I+LSS+VLNHQ+AL+VL+EQLYR+WTI+KGQ YHH
Sbjct: 144 TFCIGGPYGLGVQVRQRADATIRLSSLVLNHQVALIVLMEQLYRAWTIIKGQKYHH 199
>gi|357165813|ref|XP_003580502.1| PREDICTED: putative RNA methyltransferase At5g10620-like
[Brachypodium distachyon]
Length = 203
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 134/157 (85%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R +PIRV+TVGKKRS G QL+V+EY KL YYC VED ++SNPK T DVK QI+ ED A
Sbjct: 47 RTMPIRVLTVGKKRSQGTQLLVEEYKEKLSYYCGVEDTLIKSNPKLTSDVKVQIEAEDTA 106
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+M + ++D+VV+LDENG D+ SEQ+A+L+GDAG+TG+SR++FCIGGPYG G ++RERA+
Sbjct: 107 MMQQLKAEDFVVVLDENGKDVISEQIADLIGDAGNTGSSRLTFCIGGPYGLGVQVRERAD 166
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+I+LSS+VLNHQ+AL+VL+EQLYR+WTI+KGQ YHH
Sbjct: 167 ATIRLSSLVLNHQVALIVLMEQLYRAWTIIKGQKYHH 203
>gi|38346555|emb|CAE02132.2| OSJNBa0035M09.16 [Oryza sativa Japonica Group]
Length = 155
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 133/155 (85%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+P+RV+TVGKKRS G QL+V+EY KL YYC +ED ++SNPK T DVK Q++ EDMA+M
Sbjct: 1 MPMRVLTVGKKRSRGAQLIVEEYKEKLGYYCDIEDTLIKSNPKLTSDVKVQVEAEDMAMM 60
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ +D+VV+LDENG D+ SEQ+A+L+GDAG+TG+SR++FCIGGPYG G ++RERA+ +
Sbjct: 61 LQLKPEDFVVVLDENGKDVTSEQVADLVGDAGNTGSSRLTFCIGGPYGFGLQVRERADAT 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I+LSSMVLNHQ+AL+VL+EQLYR+WTI+KGQ YHH
Sbjct: 121 IRLSSMVLNHQVALIVLMEQLYRAWTIIKGQKYHH 155
>gi|414585543|tpg|DAA36114.1| TPA: hypothetical protein ZEAMMB73_824445 [Zea mays]
Length = 203
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 149/189 (78%), Gaps = 11/189 (5%)
Query: 53 AYAKN---SIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK 107
+++KN S PSP AG Y+ + +A+P+R++TVGKKRS G QL+V+EY KL +YC+
Sbjct: 15 SFSKNRGASTPSPLAGRRSKYSGQSVKAMPMRLLTVGKKRSRGTQLLVEEYKEKLGHYCE 74
Query: 108 VEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVML------DENGLDIGSEQMAE 161
ED +RSNPK T DVK Q++ ED A+M + SDD+V++L DENG D+ SEQ+A+
Sbjct: 75 FEDTLIRSNPKLTSDVKVQVEAEDTAMMQQLKSDDFVILLALVVVLDENGKDVISEQIAD 134
Query: 162 LMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWT 221
L+GDAG+TG+SR++FCIGGPYG G ++RERA+ +I+LSS+VLNHQ+AL+VL+EQLYR+WT
Sbjct: 135 LIGDAGNTGSSRLTFCIGGPYGLGLQVRERADATIRLSSLVLNHQVALIVLMEQLYRAWT 194
Query: 222 ILKGQNYHH 230
I+KGQ YHH
Sbjct: 195 IIKGQKYHH 203
>gi|224028643|gb|ACN33397.1| unknown [Zea mays]
Length = 203
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 148/189 (78%), Gaps = 11/189 (5%)
Query: 53 AYAKN---SIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK 107
+++KN S PSP AG Y+ + +A+P+R++TVGKKRS G QL+V+EY KL +YC+
Sbjct: 15 SFSKNRGASTPSPLAGRRSKYSGQSVKAMPMRLLTVGKKRSRGTQLLVEEYKEKLGHYCE 74
Query: 108 VEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVML------DENGLDIGSEQMAE 161
ED +RSNPK T DVK Q++ ED A+M + SDD+V++L DENG D+ SEQ+A+
Sbjct: 75 FEDTLIRSNPKLTSDVKVQVEAEDTAMMQQLKSDDFVILLALVVVLDENGKDVISEQIAD 134
Query: 162 LMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWT 221
L+GDAG+TG+SR++FCIGGPYG G ++RERA+ +I LSS+VLNHQ+AL+VL+EQLYR+WT
Sbjct: 135 LIGDAGNTGSSRLTFCIGGPYGLGLQVRERADATISLSSLVLNHQVALIVLMEQLYRAWT 194
Query: 222 ILKGQNYHH 230
I+KGQ YHH
Sbjct: 195 IIKGQKYHH 203
>gi|168060349|ref|XP_001782159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666397|gb|EDQ53053.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 122/155 (78%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+P++++TVGK R ++ V EYI K++ YC E++QLR NPKN+ DV Q+ E VM
Sbjct: 1 MPMKLVTVGKDRGAALENVALEYIKKIQRYCPFEEVQLRPNPKNSSDVPTQVSSEGERVM 60
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
IS+ DWV++LDE G ++ SE+ A+L+ DAG TGAS I FCIGGP+GHGP++RERAN+S
Sbjct: 61 RSISTKDWVIILDERGKELTSEKFADLVADAGETGASAIVFCIGGPFGHGPQVRERANVS 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+KLS+MVLNHQIA LVL+EQ+YR+WTIL+G+ YHH
Sbjct: 121 VKLSTMVLNHQIAFLVLLEQIYRAWTILRGEKYHH 155
>gi|302787563|ref|XP_002975551.1| hypothetical protein SELMODRAFT_104011 [Selaginella moellendorffii]
gi|300156552|gb|EFJ23180.1| hypothetical protein SELMODRAFT_104011 [Selaginella moellendorffii]
Length = 155
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 118/157 (75%), Gaps = 2/157 (1%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R I+V+TVGK GVQ+++D Y K++ YC + +Q+R NPKN+ V QI+ E
Sbjct: 1 RPAKIKVLTVGKSPDPGVQMLLDGYSRKIQRYCGFQVVQVRPNPKNSRQV--QIEAESEN 58
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
M IS+ DWV +LDE+G D+ S ++A+L+ DA + +S + FCIGGPYGHG +++ RAN
Sbjct: 59 AMRNISTSDWVAVLDESGRDVTSLELADLIADAANNCSSSLLFCIGGPYGHGSRVKTRAN 118
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
++++LSS+VLNHQ+AL+VLVEQ+YRSWTIL+G+NYHH
Sbjct: 119 VTLRLSSLVLNHQVALIVLVEQIYRSWTILRGENYHH 155
>gi|302783493|ref|XP_002973519.1| hypothetical protein SELMODRAFT_99450 [Selaginella moellendorffii]
gi|300158557|gb|EFJ25179.1| hypothetical protein SELMODRAFT_99450 [Selaginella moellendorffii]
Length = 155
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 118/157 (75%), Gaps = 2/157 (1%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R I+V+TVGK GVQ+++D Y K++ YC + +Q+R NPKN+ V QI+ E
Sbjct: 1 RPAKIKVLTVGKSPDPGVQMLLDGYSRKIQRYCGFQVVQVRPNPKNSRQV--QIEAESEN 58
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
M IS+ DWV +LDENG D+ S ++A+L+ DA + +S + FCIGGPYGHG +++ RAN
Sbjct: 59 AMRNISTSDWVAVLDENGRDVTSLELADLIADAANNCSSSLLFCIGGPYGHGSRVKTRAN 118
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
++++LSS+VLNHQ+AL+VLVEQ+YRSWTIL+G++YHH
Sbjct: 119 VTLRLSSLVLNHQVALIVLVEQIYRSWTILRGEHYHH 155
>gi|307111155|gb|EFN59390.1| hypothetical protein CHLNCDRAFT_137874 [Chlorella variabilis]
Length = 186
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 102/157 (64%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R +PI V+TV K S G +L+ E+ KLK Y + +Q++ NPKN + ++ E
Sbjct: 30 RPIPITVVTVAKGSSKGAELMALEWADKLKRYTSLSQIQVKPNPKNAKETAVAVRHEGER 89
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
V+ ++ D VV+LDE G DI SE +A L+ A + FCIGGPYGH P +R R N
Sbjct: 90 VLKVLQPSDRVVLLDERGRDISSEDLARLLAQASDQSWPLVVFCIGGPYGHAPAVRARGN 149
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+I+LS MVLNHQ+A +VL+EQLYR+WTIL+G+ YHH
Sbjct: 150 DTIRLSKMVLNHQVAHVVLLEQLYRAWTILRGEPYHH 186
>gi|255075957|ref|XP_002501653.1| predicted protein [Micromonas sp. RCC299]
gi|226516917|gb|ACO62911.1| predicted protein [Micromonas sp. RCC299]
Length = 218
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 109/157 (69%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
RA+PIRVI V K + E+ G++ Y +++ +++NPKN D KAQ++ E
Sbjct: 62 RAVPIRVILVSKGGGKDMDNACGEWSGRIGRYAPFDEITVKTNPKNAKDPKAQMEGEGER 121
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
VM I S D VV++DE G D+ SE +AEL+ +AG G + F +GGP+GHG +RERA+
Sbjct: 122 VMKHIDSRDLVVLMDERGKDLTSEALAELVAEAGDGGYGGLVFAVGGPFGHGAAVRERAD 181
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+I+LSSMV+NHQ+A LVL+EQ+YR+WTILKG+ YHH
Sbjct: 182 RTIRLSSMVMNHQVARLVLLEQIYRAWTILKGEPYHH 218
>gi|159475549|ref|XP_001695881.1| hypothetical protein CHLREDRAFT_137878 [Chlamydomonas reinhardtii]
gi|158275441|gb|EDP01218.1| predicted protein [Chlamydomonas reinhardtii]
Length = 181
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 116/176 (65%), Gaps = 7/176 (3%)
Query: 55 AKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR 114
A +IP G G F+ RAL +++ITV K+ S G L DE + K++ Y V+ + ++
Sbjct: 13 ASVTIPPAGHGPFV-----RAL-VQLITVSKENSKGATLFADELLEKVQRYAPVQSINIK 66
Query: 115 SNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRI 174
NP+N+ D Q + E V+ + S D VV+LDE G ++ SE +A+L+ AG G I
Sbjct: 67 PNPRNSPDPAVQRETEGEKVLKALDSRDLVVVLDERGSELKSEDLAKLVAAAGDEGRP-I 125
Query: 175 SFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+FCIGGPYGH +R RA+ I+LSSMVLNHQ+A++VL+EQ+YR+WTIL+G YHH
Sbjct: 126 AFCIGGPYGHSDAVRGRADRMIRLSSMVLNHQVAVVVLLEQVYRAWTILRGVPYHH 181
>gi|384245219|gb|EIE18714.1| DUF163-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 175
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 101/157 (64%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA 133
R +P++++T+ K S G +L+ E++ KL+ Y + ++ +R NPK + + ++ E
Sbjct: 19 RPVPVKIVTISKNNSAGAELLAGEWMQKLQRYTEASEMVIRPNPKKSSEPTVAMQAEGEK 78
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
V+ I D V++LDE G + SEQ A ++ +AG G + FCIGGPYGH +R+RA
Sbjct: 79 VLKAIRPQDRVIVLDERGKEATSEQFASILAEAGDEGVGAVVFCIGGPYGHSDAVRKRAY 138
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS VLNHQIA LVL+EQLYR WTI+KG+ YHH
Sbjct: 139 SMLSLSKCVLNHQIARLVLLEQLYRGWTIIKGEPYHH 175
>gi|303286593|ref|XP_003062586.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456103|gb|EEH53405.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 177
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 103/156 (66%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAV 134
ALP++++ V K V E+ K++ Y +++ +R NPKN D +AQ++ E V
Sbjct: 22 ALPMKLVIVSKGGGASVDAACGEWADKIRRYAPFDEIVVRPNPKNAKDPRAQLEAEGERV 81
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
M + + D+VV++DE G D+ SE +A ++ D G G S I FC+GGP+GHG + RA+
Sbjct: 82 MRHVDARDFVVLMDERGKDLSSEALAAVVADVGDGGHSGIVFCVGGPFGHGDAVTRRADA 141
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
++LSSMV+NHQ+A +VL+EQ YR+ TIL+G+ YHH
Sbjct: 142 RVRLSSMVMNHQVARIVLLEQAYRAHTILRGEPYHH 177
>gi|302836018|ref|XP_002949570.1| hypothetical protein VOLCADRAFT_59226 [Volvox carteri f.
nagariensis]
gi|300265397|gb|EFJ49589.1| hypothetical protein VOLCADRAFT_59226 [Volvox carteri f.
nagariensis]
Length = 162
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 103/161 (63%), Gaps = 9/161 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I++I+V K+ S G L E + KL+ Y V + ++ NP+N+ D Q + E V+
Sbjct: 3 IKIISVSKENSKGATLFAKELLEKLERYAPVSSITVKPNPRNSLDPAVQRETEGERVLKA 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D+VV+LDE G ++ SE +A+L+ AG G ++FCIGGPYGH +R RA+ ++
Sbjct: 63 LDPRDFVVVLDERGKELRSEDLADLVAAAGDEGRP-LAFCIGGPYGHSDAVRARADRMLR 121
Query: 198 LSSMVLNHQ--------IALLVLVEQLYRSWTILKGQNYHH 230
+S+MVLNHQ +AL+VL+EQLYR+WTIL+G YHH
Sbjct: 122 MSAMVLNHQASFGHGASVALVVLLEQLYRAWTILRGVPYHH 162
>gi|145344864|ref|XP_001416944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577170|gb|ABO95237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 194
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 88/136 (64%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154
VDEY + Y E+ ++ NPKN D + Q E VM I++ D+VV+LDE G D
Sbjct: 59 VDEYARRCARYAPFEEKTVKQNPKNVKDTELQKVHEGERVMRAITARDYVVLLDERGRDA 118
Query: 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVE 214
SE++AEL+ G G R F +GGP+GHG + +RAN S++LS MVLNHQ+A LV+ E
Sbjct: 119 SSEEVAELVARIGDEGYERGVFVLGGPFGHGKDVIDRANESLRLSKMVLNHQVARLVVTE 178
Query: 215 QLYRSWTILKGQNYHH 230
LYR+ TIL+G+ YHH
Sbjct: 179 ALYRAHTILRGEPYHH 194
>gi|424513060|emb|CCO66644.1| alpha/beta knot family protein [Bathycoccus prasinos]
Length = 239
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 99/161 (61%), Gaps = 6/161 (3%)
Query: 76 LPIRVITV-----GKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE 130
+P +I V G + +L +L VD +Y K E + NPKN ++ Q E
Sbjct: 79 IPTAIIAVKSSGGGDENNLYKKLEVDFETKIKRYNPKFEMISCPQNPKNEKGIEEQKASE 138
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMA-ELMGDAGSTGASRISFCIGGPYGHGPKMR 189
VM I + D+VV++ E G SE+ A +++ +G G R+ F IGGP+GHG ++R
Sbjct: 139 GERVMKKIDARDFVVLMCERGQSYTSERFASDVLCKSGDLGHGRLVFVIGGPFGHGEEVR 198
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RA++S++LS MV+NH++A +VL+EQ+YR+WTI++G+ YHH
Sbjct: 199 ARADVSLRLSEMVMNHRVARMVLLEQIYRAWTIVRGEPYHH 239
>gi|308801715|ref|XP_003078171.1| unnamed protein product [Ostreococcus tauri]
gi|116056622|emb|CAL52911.1| unnamed protein product [Ostreococcus tauri]
Length = 96
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 69/96 (71%)
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
M + D+VV+LDE G ++ SEQ+A+++ G G R F IGGP+GHG ++ +RAN
Sbjct: 1 MKFVGDRDYVVLLDERGEEVSSEQLADIVAKIGDEGHERGVFIIGGPFGHGSQVVKRANK 60
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SI+LS MVLNHQ+A LVL E LYR+ TIL+G+ YHH
Sbjct: 61 SIRLSKMVLNHQVARLVLTEALYRAHTILRGEPYHH 96
>gi|373956066|ref|ZP_09616026.1| Ribosomal RNA large subunit methyltransferase H [Mucilaginibacter
paludis DSM 18603]
gi|373892666|gb|EHQ28563.1| Ribosomal RNA large subunit methyltransferase H [Mucilaginibacter
paludis DSM 18603]
Length = 157
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I +++VGK ++ +D+Y+ +LK+Y K E ++L N K + + K+ +M
Sbjct: 1 MKITLLSVGKTEDAYLKDGIDKYLKRLKHYIKFETIELPELKNTKALSQEQQKAKEAEML 60
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ NI ++ D+V++LDE G + S Q A+L+ + + + F IGGPYG + +RAN
Sbjct: 61 LKNI-NTTDYVILLDEGGAQLTSVQFADLLNKKMISSVNNLVFIIGGPYGFDESVYKRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L VEQ+YR++TILKG+ YHH
Sbjct: 120 DKLSLSRMTFSHQMVRLFFVEQVYRAYTILKGEPYHH 156
>gi|325105165|ref|YP_004274819.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324974013|gb|ADY52997.1| protein of unknown function DUF163 [Pedobacter saltans DSM 12145]
Length = 157
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMA 133
+ I ++TVGK + +++Y+ +LK+Y K E DL N KN + + + K+ ++
Sbjct: 1 MKITLLTVGKTEDKYLVEGIEKYVKRLKHYVKFEIKDLPELKNTKNLSEDQQKAKEAELL 60
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ N S+ D++V+LDE G+ S Q A+ + + + F IGGPYG + +RAN
Sbjct: 61 LKNF-SNTDFIVLLDEKGVSYTSVQFADFLNKKMISATQHMIFVIGGPYGFDQSVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L EQ+YR++TIL+G+ YHH
Sbjct: 120 DKISLSKMTFSHQMVRLFFTEQIYRAFTILRGEPYHH 156
>gi|374597323|ref|ZP_09670327.1| Ribosomal RNA large subunit methyltransferase H [Gillisia limnaea
DSM 15749]
gi|374597330|ref|ZP_09670334.1| Ribosomal RNA large subunit methyltransferase H [Gillisia limnaea
DSM 15749]
gi|373871962|gb|EHQ03960.1| Ribosomal RNA large subunit methyltransferase H [Gillisia limnaea
DSM 15749]
gi|373871969|gb|EHQ03967.1| Ribosomal RNA large subunit methyltransferase H [Gillisia limnaea
DSM 15749]
Length = 157
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMA 133
+ I+++ +GK +Q + + YI +L +Y + E +L + KN D Q + E
Sbjct: 1 MTIKLLGIGKTDDPALQNLTEVYIKRLVFYNRFE-FELIPDIKNAKNLDENQQKQKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N I++ D+VV+LDENG SE +E + ++G ++ F IGGPYG + +RA+
Sbjct: 60 LLNKIAASDFVVLLDENGKQYSSEAFSEFIQKRLNSGLKQLVFIIGGPYGFSEDVYKRAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L VEQLYR++TILK + YHH
Sbjct: 120 AKISLSKMTFSHQMIRLFFVEQLYRAFTILKNEPYHH 156
>gi|365959646|ref|YP_004941213.1| rRNA large subunit methyltransferase [Flavobacterium columnare ATCC
49512]
gi|365736327|gb|AEW85420.1| rRNA large subunit methyltransferase [Flavobacterium columnare ATCC
49512]
Length = 157
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ IR+I +GK + +Q ++D+YI +L +Y K DL++ ++ KN ++ Q + E
Sbjct: 1 MNIRLIAIGKTDNKNLQTLIDDYIKRLSFYVKF-DLEIIADIKNAKNLSETQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +++ D++V+LDENG + S +E + ++G + F IGGPYG + ++AN
Sbjct: 60 ILAKLTTTDYLVLLDENGKSLSSVGFSEELQKKMNSGIKTLVFVIGGPYGFSDSVYKKAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS+M +HQ+ L +EQ+YR +TIL+ + YHH
Sbjct: 120 GKISLSAMTFSHQMVRLFFIEQIYRGFTILRNEPYHH 156
>gi|169351420|ref|ZP_02868358.1| hypothetical protein CLOSPI_02200 [Clostridium spiroforme DSM 1552]
gi|169291642|gb|EDS73775.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
spiroforme DSM 1552]
Length = 159
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-KAQIKD-ED 131
+ I++I VGK + + V+EYI +LK YCKVE ++ S P N + IKD E
Sbjct: 1 MKIKIICVGKLKEKYLVAGVNEYIKRLKGYCKVEIYEVADESIPDNCSLANEVIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ +++ I DD+V++LD +G I S ++++ + G S I F IGG GHG K+ ER
Sbjct: 61 IKILDKIKQDDYVILLDVSGNQIDSVELSKQVESCMINGKSTIDFVIGGSLGHGSKILER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ L+LVEQ+YR++ I+K +NYH
Sbjct: 121 ANYRLSFSKMTFPHQLMRLILVEQIYRAFKIMKNENYH 158
>gi|406660377|ref|ZP_11068509.1| Ribosomal RNA large subunit methyltransferase H [Cecembia
lonarensis LW9]
gi|405555762|gb|EKB50768.1| Ribosomal RNA large subunit methyltransferase H [Cecembia
lonarensis LW9]
Length = 157
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE---DM 132
+ I+++ VGK +Q ++DEY +L YY K E L+L + KNT ++ + ++ E ++
Sbjct: 1 MQIKLLAVGKTDHSAIQQLMDEYSKRLGYYIKFE-LELIQDIKNTKNLSSTVQKEKEGEL 59
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ ++ SD+ +++LDENG S + + + G ++ F IGGPYG ++ +RA
Sbjct: 60 ILKRVMPSDE-LILLDENGKSYSSIDFSTFLQKKMNAGLKQLVFVIGGPYGFSEEVFQRA 118
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
N + LS M +HQ+ + VEQLYR++TIL+ + YHH
Sbjct: 119 NGKLSLSKMTFSHQMVRVFFVEQLYRAFTILRNEPYHH 156
>gi|295133958|ref|YP_003584634.1| SPOUT methyltransferase superfamily protein [Zunongwangia profunda
SM-A87]
gi|294981973|gb|ADF52438.1| SPOUT methyltransferase superfamily protein [Zunongwangia profunda
SM-A87]
Length = 157
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I+++ +GK S +Q +++ Y+ +L++Y K E DL+ N D Q E
Sbjct: 1 MTIKLLCIGKTDSKELQKLIEVYLKRLQFYTKFEIDVIPDLKKARNL----DENQQKTKE 56
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++N + D+VV+LDENG SE +E + ++G ++ F IGGPYG + +
Sbjct: 57 GELILNKTQTSDFVVLLDENGKQFSSEAFSEYLQKRMNSGLKQLIFVIGGPYGFSEAVYQ 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RA+ I LS M +HQ+ L + EQ+YR +TILK + YHH
Sbjct: 117 RADGKISLSKMTFSHQMVRLFITEQIYRGFTILKNEPYHH 156
>gi|237735454|ref|ZP_04565935.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229381199|gb|EEO31290.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 159
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I+++ VG+ + + + EY+ +L+ YCKVE ++ +S P N + E
Sbjct: 1 MKIKIVCVGRLKEKYLVAGMQEYLKRLQAYCKVEVYEVADKSIPDNCSLANETLIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I DD+V++LD +G I S +++ M A +G S I+F IGG GHG +M +R
Sbjct: 61 RKMLDKIKQDDYVILLDVSGTQIDSVELSNKMEKAMISGKSTIAFVIGGSLGHGEEMLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M L HQ+ LVLVEQ+YR++ I+K + YH
Sbjct: 121 ANFRLSFSKMTLPHQLMRLVLVEQIYRAFKIMKNETYH 158
>gi|347536867|ref|YP_004844292.1| hypothetical protein FBFL15_2024 [Flavobacterium branchiophilum
FL-15]
gi|345530025|emb|CCB70055.1| Protein of unknown function YydA [Flavobacterium branchiophilum
FL-15]
Length = 157
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I++I +GK + +Q+++D+Y +L +Y K E DL+ N KN + K Q + E
Sbjct: 1 MNIKLIAIGKTDNKNLQILIDDYQKRLGFYIKFEIDIIPDLK---NLKNVSE-KIQKEKE 56
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I+S D +++LDENG S +E + + G + F IGGPYG + +
Sbjct: 57 GTLILSKITSSDQLILLDENGKMFSSVAFSEEIQKKMNAGIKNLVFVIGGPYGFSEAVYQ 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+A I LS M +HQ+ L VEQLYRS+TILK + YHH
Sbjct: 117 KAQGKISLSKMTFSHQMIRLFFVEQLYRSFTILKNEPYHH 156
>gi|422348643|ref|ZP_16429535.1| rRNA large subunit m3Psi methyltransferase RlmH [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404659110|gb|EKB31970.1| rRNA large subunit m3Psi methyltransferase RlmH [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 155
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
IR++ VG++ + Q V +Y+ + +VE ++R+ P+ + E ++
Sbjct: 3 IRIVAVGQRITEWAQSAVSDYLSRFPRDFRVELREIRTEPRAGQTPARLMAAEAERILAA 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I DD+VV+LDE+G D+ + +A + G + + F IGGP G P+++ RAN++I+
Sbjct: 63 IEPDDFVVVLDEHGKDLTTMDLARHFSHWRADGETPV-FVIGGPDGLAPEVKARANLTIR 121
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LSSM L H A ++L EQ+YR+W+IL G YH
Sbjct: 122 LSSMTLPHAFARVMLSEQIYRAWSILAGHPYH 153
>gi|384099455|ref|ZP_10000541.1| rRNA large subunit methyltransferase [Imtechella halotolerans K1]
gi|383832803|gb|EID72273.1| rRNA large subunit methyltransferase [Imtechella halotolerans K1]
Length = 157
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I++I +GK + +Q ++ +YI +L +YC+ E L N KN ++ + K+ ++
Sbjct: 1 MQIKLIAIGKTDNPHLQSLITDYIKRLGFYCRFEFEILPDIKNAKNLSQLQQKEKEGELI 60
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + SSDD +V+LDE+G S A+ + + G ++ F IGGPYG + RAN
Sbjct: 61 LKKLQSSDD-LVLLDEHGKTYSSISYADWIQKKMNAGTKQLIFVIGGPYGFSEAVYARAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I SSM +HQ+ L VEQLYR++TILK + YHH
Sbjct: 120 GKISFSSMTFSHQMIRLFFVEQLYRAFTILKNEPYHH 156
>gi|120435456|ref|YP_861142.1| rRNA large subunit methyltransferase [Gramella forsetii KT0803]
gi|166977888|sp|A0M0D0.1|RLMH_GRAFK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|117577606|emb|CAL66075.1| protein containing DUF163 [Gramella forsetii KT0803]
Length = 157
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMA 133
+ I+++ +GK ++ ++ Y +L++Y K E ++ + K T D Q E
Sbjct: 1 MTIKLVCIGKTDKKELEALIKIYSDRLQHYIKFE-FEIIPDLKKTKNLDENQQKSKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ + + D+VV+LDENG SE +E + +TG R+ F IGGPYG ++ +RA+
Sbjct: 60 ILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L EQLYR++TILK + YHH
Sbjct: 120 SKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156
>gi|167754811|ref|ZP_02426938.1| hypothetical protein CLORAM_00315 [Clostridium ramosum DSM 1402]
gi|365829840|ref|ZP_09371429.1| rRNA large subunit m3Psi methyltransferase RlmH [Coprobacillus sp.
3_3_56FAA]
gi|374626555|ref|ZP_09698967.1| rRNA large subunit m3Psi methyltransferase RlmH [Coprobacillus sp.
8_2_54BFAA]
gi|167704861|gb|EDS19440.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
ramosum DSM 1402]
gi|365264153|gb|EHM93965.1| rRNA large subunit m3Psi methyltransferase RlmH [Coprobacillus sp.
3_3_56FAA]
gi|373914083|gb|EHQ45916.1| rRNA large subunit m3Psi methyltransferase RlmH [Coprobacillus sp.
8_2_54BFAA]
Length = 159
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I+++ VG+ + + + EY+ +L+ YCKVE ++ S P N + E
Sbjct: 1 MKIKIVCVGRLKEKYLVAGMQEYLKRLQAYCKVEVYEVADESIPDNCSLANETLIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I DD+V++LD +G I S +++ M A +G S I+F IGG GHG +M +R
Sbjct: 61 RKMLDKIKQDDYVILLDVSGTQIDSVELSNKMEKAMISGKSTIAFVIGGSLGHGEEMLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M L HQ+ LVLVEQ+YR++ I+K + YH
Sbjct: 121 ANFRLSFSKMTLPHQLMRLVLVEQIYRAFKIMKNETYH 158
>gi|89891453|ref|ZP_01202958.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
gi|89516227|gb|EAS18889.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
Length = 157
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I ++ VGK + + Y+ +LK+Y E LQ+ + K T ++ + Q +E
Sbjct: 1 MKIILLAVGKTDDSRIDQLTQMYVDRLKHYINFE-LQIIPDLKKTKNLSEEQQKNEEGKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N + D++ +LDE G + S Q AEL+ +G R+ F IGGPYG + +RAN
Sbjct: 60 ILNKLEKSDFITLLDEKGKKLSSMQFAELINKRSVSGLKRLVFIIGGPYGFSADVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L EQ+YR++TIL+ + YHH
Sbjct: 120 SKLSLSDMTFSHQMVRLFATEQIYRAFTILRNEPYHH 156
>gi|390942847|ref|YP_006406608.1| hypothetical protein Belba_1218 [Belliella baltica DSM 15883]
gi|390416275|gb|AFL83853.1| hypothetical protein Belba_1218 [Belliella baltica DSM 15883]
Length = 157
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I+++ VGK +Q +++EY ++ +Y K DL++ + KNT ++ Q + E
Sbjct: 1 MQIKLLAVGKTDHSAIQSLIEEYSKRVNFYIKF-DLEIIPDLKNTKNISEAMQKEKEGEF 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS+ D +++LDENG S ++ + ++G ++ F IGGPYG + +RAN
Sbjct: 60 ILKKISNSDDLILLDENGKQFSSIDFSDFIQKKMNSGLKQLVFVIGGPYGFSDSVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ + +EQ+YR++TIL+ + YHH
Sbjct: 120 GKLSLSKMTFSHQMVRVFFIEQIYRAFTILRNEPYHH 156
>gi|313202676|ref|YP_004041333.1| hypothetical protein Palpr_0186 [Paludibacter propionicigenes WB4]
gi|312441992|gb|ADQ78348.1| protein of unknown function DUF163 [Paludibacter propionicigenes
WB4]
Length = 157
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I +TVGK + + + +EY +LK+Y E + + N KN + Q K+ D+
Sbjct: 1 MKITFLTVGKTTNQYLIKLQEEYQNRLKFYIPFETVVIPELKNTKNLSVNEQQEKEADL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++D V++LDE G S +E M R+ F +GGPYG ++ +RAN
Sbjct: 60 ILKAFEANDEVILLDERGKQYTSVGFSEFMAKKMLASHKRMIFVVGGPYGFSERVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LSSM +HQ+ L+ EQLYR+ TILKG+ YHH
Sbjct: 120 GKISLSSMTFSHQMIRLIFTEQLYRAMTILKGEPYHH 156
>gi|319951627|ref|YP_004162894.1| ribosomal RNA large subunit methyltransferase h [Cellulophaga
algicola DSM 14237]
gi|319420287|gb|ADV47396.1| Ribosomal RNA large subunit methyltransferase H [Cellulophaga
algicola DSM 14237]
Length = 157
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I+++ +GK S + +++EY +LK+Y K DL+L + KNT ++ +AQ K+ E A
Sbjct: 1 MTIKLLAIGKTDSSHLSQLIEEYENRLKHYIKF-DLELIPDIKNTKNLSEAQQKEKEGEA 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I++ D +++LDENG S + + ++G ++ F IGGPYG + +A
Sbjct: 60 ILKKITNTDVLILLDENGKQFTSIDFSNYLQKKMNSGIKQLVFVIGGPYGFSDAIYNKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +VEQ+YR++TILK + YHH
Sbjct: 120 GKISLSKMTFSHQMIRLFIVEQVYRAFTILKNEPYHH 156
>gi|383450131|ref|YP_005356852.1| hypothetical protein KQS_04075 [Flavobacterium indicum GPTSA100-9]
gi|380501753|emb|CCG52795.1| Protein of unknown function YydA [Flavobacterium indicum
GPTSA100-9]
Length = 157
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I++I +GK + +Q ++DEY +L +Y K E D++ N KN + + +IK E
Sbjct: 1 MNIKLIAIGKTDNKNLQALIDEYTKRLGFYVKFELDIIPDIK---NVKNLSESEQKIK-E 56
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ +S D +++LDENG + S ++ + ++G ++F IGGPYG ++ +
Sbjct: 57 GQLILSKLSPTDQLIVLDENGKEFNSVGFSDFLQKKMNSGIKTLAFVIGGPYGFSEEVYQ 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+A + LS M +HQ+ L ++EQ+YRS+TIL + YHH
Sbjct: 117 KAQGKVSLSQMTFSHQMVRLFVIEQIYRSFTILNNEPYHH 156
>gi|443245153|ref|YP_007378378.1| UPF0247 protein [Nonlabens dokdonensis DSW-6]
gi|442802552|gb|AGC78357.1| UPF0247 protein [Nonlabens dokdonensis DSW-6]
Length = 157
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I ++ VGK + + Y+ +L +Y DL+ + K T ++ Q +E
Sbjct: 1 MKITLLAVGKTDDSRIDQLTQMYVDRLGHYINF-DLEFLPDLKKTKNLSEDQQKNEEGKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N + D+V +LDE G S Q AEL+ +G R+ F IGGPYG P + RAN
Sbjct: 60 ILNKLEKSDFVTLLDEKGKKYTSMQFAELINKRSISGLKRLVFIIGGPYGFSPDVYSRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L VEQ+YR++TIL+ + YHH
Sbjct: 120 SKLSLSDMTFSHQMVRLFAVEQIYRAFTILRNEPYHH 156
>gi|126663848|ref|ZP_01734843.1| hypothetical protein FBBAL38_10212 [Flavobacteria bacterium BAL38]
gi|126624112|gb|EAZ94805.1| hypothetical protein FBBAL38_10212 [Flavobacteria bacterium BAL38]
Length = 157
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 95/157 (60%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ IR++T+GK + +Q ++D+Y +L +Y K DL++ + KN ++ +AQ K+ E
Sbjct: 1 MNIRLLTIGKTDNKSLQTLIDDYTKRLSFYVKF-DLEIIPDIKNVKNLSEAQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+ D +++LDENG S ++ + + G ++F IGGPYG + ++A
Sbjct: 60 ILSKITPTDHLILLDENGKTFSSVGFSDFLQKKMNAGIKTLAFVIGGPYGFSETVYQKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L ++EQ+YR +TIL+ + YHH
Sbjct: 120 GKVSLSEMTFSHQMVRLFVIEQIYRGFTILRNEPYHH 156
>gi|336173183|ref|YP_004580321.1| ribosomal RNA large subunit methyltransferase H [Lacinutrix sp.
5H-3-7-4]
gi|334727755|gb|AEH01893.1| Ribosomal RNA large subunit methyltransferase H [Lacinutrix sp.
5H-3-7-4]
Length = 157
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK S +Q ++DEY +L +Y K + L++ + KNT ++ Q + E
Sbjct: 1 MTIKLIAIGKTDSKQLQALIDEYKKRLGFYIKFK-LEIIPDIKNTKNLSEAQQKQKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N +S+ D +++LDENG S + + ++G ++ F IGGPYG + +A
Sbjct: 60 ILNKVSNTDALILLDENGKQFDSVGFSNYLQKHMNSGIKQLVFVIGGPYGFSEDVYAKAK 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L ++EQLYR +TILK + YHH
Sbjct: 120 GKVSLSKMTFSHQMVRLFIIEQLYRGYTILKNEPYHH 156
>gi|405355195|ref|ZP_11024421.1| LSU m3Psi1915 methyltransferase RlmH [Chondromyces apiculatus DSM
436]
gi|397091537|gb|EJJ22339.1| LSU m3Psi1915 methyltransferase RlmH [Myxococcus sp. (contaminant
ex DSM 436)]
Length = 154
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 13/160 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL------RSNPKNTGDVKAQIKD 129
+ +R++++GK RS + V EY +L +Y + E +++ R P GD KA D
Sbjct: 1 MKVRLLSIGKDRSGLYEPAVQEYARRLGHYTRFELVEMAEASGKRLKP---GDAKAAEAD 57
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
A++ DW+V LDE G + S +++ +G A TGA + F IGG G ++R
Sbjct: 58 ---AILAKRKPQDWLVALDERGSLLDSPELSRYVGKA-QTGAKDLLFVIGGDEGLDARVR 113
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 114 DAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153
>gi|108763853|ref|YP_629498.1| hypothetical protein MXAN_1239 [Myxococcus xanthus DK 1622]
gi|118574472|sp|Q1DCX5.1|RLMH_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|108467733|gb|ABF92918.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 154
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 13/160 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL------RSNPKNTGDVKAQIKD 129
+ +R++++GK RS + V EY +L +Y + E +++ R P GD KA
Sbjct: 1 MKVRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKP---GDAKAA--- 54
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E A+++ DW+V LDE G + S +++ +G A TGA + F IGG G ++R
Sbjct: 55 EAEAILSKRKPQDWLVALDERGSLLDSVELSRYVGKA-QTGAKDLLFIIGGDEGLDARVR 113
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 114 DAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153
>gi|298208250|ref|YP_003716429.1| hypothetical protein CA2559_08411 [Croceibacter atlanticus
HTCC2559]
gi|83848171|gb|EAP86041.1| hypothetical protein CA2559_08411 [Croceibacter atlanticus
HTCC2559]
Length = 157
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD--VKAQIKDEDMA 133
+ I++ +GK ++ + D Y +L +Y D + + KNT + V+ Q +E
Sbjct: 1 MNIQLYAIGKTDQKLIEELTDIYTKRLGHYINF-DFTIIPDIKNTKNLSVEQQKNEEGKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+M + + D+V++LDENG + S + + +TG R+ F IGGPYG ++ RAN
Sbjct: 60 IMKQLETSDFVILLDENGKEFNSVNFSAYLQKRMNTGLKRLVFIIGGPYGFSTEVYSRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ + +EQLYR++TIL+ + YHH
Sbjct: 120 SKLSLSKMTFSHQMIRVFFIEQLYRAFTILRNEPYHH 156
>gi|404448529|ref|ZP_11013522.1| rRNA large subunit methyltransferase [Indibacter alkaliphilus LW1]
gi|403766150|gb|EJZ27025.1| rRNA large subunit methyltransferase [Indibacter alkaliphilus LW1]
Length = 157
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMA 133
+ I ++ VGK +QL+ +EY +L +Y K + ++ + KNT D K+Q + E
Sbjct: 1 MQITLLAVGKTDHSSIQLLSEEYSKRLGHYVKF-NFEVIPDLKNTKSLDEKSQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V++LDE+G S +EL+ + G ++ F IGGPYG + ER++
Sbjct: 60 ILKKIQPSDQVILLDEDGKQHSSVGFSELLQKKMNAGLKQLIFVIGGPYGFSEAVYERSD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ + +EQLYR++TIL+ + YHH
Sbjct: 120 GKISLSKMTFSHQMVRVFFIEQLYRAFTILRNEPYHH 156
>gi|91200482|emb|CAJ73530.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 214
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS----NPKNTGDVKAQIKDED 131
+ I +I GK ++ + Y +LK+YC ++ S + K++ DVK + E
Sbjct: 58 MKIELIVTGKTEDDYLKRGISVYANRLKHYCAFNIAEISSVKPISSKSSEDVKER---EA 114
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+A+ +++ D+VV+LDE G ++ S + A+ + +TG + F GG YG ++++R
Sbjct: 115 VALEKLLAPTDFVVLLDEKGRELTSVEFADFLQQKMNTGVRAVKFVSGGAYGIATQIKKR 174
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
AN ++ LS M +HQ+ L VEQLYR+ TI++ + YHH
Sbjct: 175 ANFTLSLSLMTFSHQMVRLFFVEQLYRAMTIIRNEKYHH 213
>gi|338530176|ref|YP_004663510.1| ribosomal RNA large subunit methyltransferase H [Myxococcus fulvus
HW-1]
gi|337256272|gb|AEI62432.1| ribosomal RNA large subunit methyltransferase H [Myxococcus fulvus
HW-1]
Length = 154
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 13/160 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL------RSNPKNTGDVKAQIKD 129
+ +R++++GK RS + V EY +L +Y + E ++L R P GD KA
Sbjct: 1 MKVRLLSIGKDRSGLYEPAVQEYARRLGHYTRFELVELSEASGKRLKP---GDAKAA--- 54
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E A++ DW+V LDE G + S +++ +G A TGA + F IGG G +R
Sbjct: 55 EAEAILARRKPQDWLVALDERGALLDSVELSRYVGKA-QTGAKDLLFIIGGDEGLDASVR 113
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 114 DAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153
>gi|440749862|ref|ZP_20929107.1| LSU m3Psi1915 methyltransferase RlmH [Mariniradius saccharolyticus
AK6]
gi|436481582|gb|ELP37744.1| LSU m3Psi1915 methyltransferase RlmH [Mariniradius saccharolyticus
AK6]
Length = 157
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I++I +GK +Q ++DEY+ +L +Y + E D++ KN + + K+
Sbjct: 1 MQIKLIAIGKTDYSAIQQLLDEYMKRLGHYIRFELDIIPDIK---QAKNLSETDQKEKEG 57
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + ++ +D+ +V+LDE G +GS + + + +TG ++ F +GGPYG + +
Sbjct: 58 ELILKKVLPADE-LVLLDERGKQMGSVEFSGFLQKKMNTGLKQLVFVVGGPYGFSEAVYQ 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RAN + LS M +HQ+ + VEQLYR++TIL+ + YHH
Sbjct: 117 RANGKLSLSKMTFSHQMVRVFFVEQLYRAFTILRNEPYHH 156
>gi|340616045|ref|YP_004734498.1| hypothetical protein zobellia_33 [Zobellia galactanivorans]
gi|339730842|emb|CAZ94106.1| Conserved hypothetical protein [Zobellia galactanivorans]
Length = 157
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I++I +GK S + ++ EY +LK+Y K E L++ + KN ++ +AQ K+ E
Sbjct: 1 MTIKLIAIGKTDSKSLLQLISEYENRLKHYVKFE-LEIIPDIKNAKNLTEAQQKEKEGQL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +V+LDENG S + + + ++G ++ F IGGPYG P++ +A
Sbjct: 60 ILKKLGPTDALVLLDENGRQHSSVEFSAYLQKKMNSGLKQLVFVIGGPYGFSPEVYAKAK 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +VEQ+YR++TIL+ + YHH
Sbjct: 120 GKISLSKMTFSHQMVRLFVVEQIYRAFTILRNEPYHH 156
>gi|213962454|ref|ZP_03390716.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213954780|gb|EEB66100.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 157
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I++I VGK + +Q ++ Y +L YY E LQL + KN+ + + Q E
Sbjct: 1 MNIKLIAVGKTDNSALQELITTYEKRLSYYINFE-LQLLPDIKNSKSLSEEQQKTKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+S +++LDE G + S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 60 ILSNIASSHHLILLDERGKEFTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TILK + YHH
Sbjct: 120 GKLSLSKLTFSHQMIRLFFVEQLYRAFTILKNEPYHH 156
>gi|340621307|ref|YP_004739758.1| 23S rRNA m3Psi1915 methyltransferase [Capnocytophaga canimorsus
Cc5]
gi|339901572|gb|AEK22651.1| 23S rRNA m3Psi1915 methyltransferase [Capnocytophaga canimorsus
Cc5]
Length = 175
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQIKDE 130
+ + I++I +GK + +Q ++++Y +L YY D Q+ + KN+ + + +IK+
Sbjct: 17 KNMNIKLIAIGKTDNKILQDLINDYQKRLSYYINF-DFQIIPDIKNSKTLSETQQKIKEG 75
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + I + D +++LDE G + S A+ + +TG +++F IGGPYG +
Sbjct: 76 ELILKQIENQHD-LILLDERGKEFSSVGFADFLQKKMNTGTKQLTFVIGGPYGFSQDVYA 134
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RAN I LS M +HQ+ +EQLYR +TIL+G+ YHH
Sbjct: 135 RANAQISLSKMTFSHQMIRPFFIEQLYRGFTILRGEPYHH 174
>gi|146301237|ref|YP_001195828.1| rRNA large subunit methyltransferase [Flavobacterium johnsoniae
UW101]
gi|189040158|sp|A5FE53.1|RLMH_FLAJ1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|146155655|gb|ABQ06509.1| protein of unknown function DUF163 [Flavobacterium johnsoniae
UW101]
Length = 157
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL++ + KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ +S+ D +++LDENG S +E + ++G + F IGGPYG + ++A
Sbjct: 60 ILSKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L +EQLYR +TIL+ + YHH
Sbjct: 120 GKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156
>gi|399927908|ref|ZP_10785266.1| rRNA large subunit methyltransferase [Myroides injenensis M09-0166]
Length = 157
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVM 135
I++I +GK S +Q ++DEY +L +Y D+++ + KN ++ Q + E ++
Sbjct: 3 IKLIAIGKTDSKPLQTLMDEYTKRLSFYVNF-DMEIIPDIKNAKNMSEAQQKQKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ I+ D++V+LDENG D S +E + + G + F IGGPYG ++ + A
Sbjct: 62 SKITPTDYLVLLDENGKDFTSVGFSEELQKRMNMGIKTLVFVIGGPYGFSEEVYKNAKGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L ++EQ+YR +TIL+ + YHH
Sbjct: 122 ISLSRMTFSHQMIRLFIIEQIYRGFTILRNEPYHH 156
>gi|429746167|ref|ZP_19279536.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429166952|gb|EKY08893.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 157
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I+++ VGK + +Q ++D Y +L YY E LQL + KN+ + + Q E ++
Sbjct: 3 IKLLAVGKTDNPALQQLIDMYEKRLSYYINFE-LQLLPDIKNSKSLSEEQQKAKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I+S +++LDE G + S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 62 GNIASSHHLILLDERGKEFTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRANGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 122 LSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|402831033|ref|ZP_10879726.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. CM59]
gi|402283082|gb|EJU31604.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. CM59]
Length = 157
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I+++ VGK ++ ++++Y ++++Y K E ++ + KNT ++ + Q E +
Sbjct: 1 MTIKLLVVGKTDVSLLEKIIEDYKKRIRFYIKFE-IETIPDLKNTKNISQEEQKNKEGVL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ +D++V+LDE G + S + + + +TG + F IGGPYG ++ +RAN
Sbjct: 60 LLKQIADNDFLVLLDERGKEYTSVEFSAQLQKIMNTGVKQCVFVIGGPYGFSQQVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQI L VEQLYR++TIL + YHH
Sbjct: 120 NMCSLSRMTFSHQIVRLFFVEQLYRAFTILNNEPYHH 156
>gi|390955108|ref|YP_006418866.1| hypothetical protein Aeqsu_2391 [Aequorivita sublithincola DSM
14238]
gi|390421094|gb|AFL81851.1| hypothetical protein Aeqsu_2391 [Aequorivita sublithincola DSM
14238]
Length = 157
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I ++ +GK + +Q ++D+Y +L +Y E L++ + KN ++ Q + E
Sbjct: 1 MKITLLAIGKTDNKQLQSLMDDYTKRLGFYISFE-LEVIPDIKNAKNLSETLQKQAEGEE 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D +++LDE G SE +E + ++G + F IGGPYG + ERAN
Sbjct: 60 ILKRTTTADVLILLDEKGRTFTSEGFSEFLQKRMNSGLKNLIFIIGGPYGFSETVYERAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LSSM +HQ+ L +EQLYR +TIL+ + YHH
Sbjct: 120 GKVSLSSMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156
>gi|354605396|ref|ZP_09023384.1| hypothetical protein HMPREF9450_02299 [Alistipes indistinctus YIT
12060]
gi|353346938|gb|EHB91216.1| hypothetical protein HMPREF9450_02299 [Alistipes indistinctus YIT
12060]
Length = 157
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVM 135
I +I VGK S ++ ++ +Y+ +L YY KV + L +PKN V A Q + E A++
Sbjct: 3 IDLIVVGKTDSPQIEALLADYLKRLNYYAKVTLIVL-PDPKNRKTVSAESQKRQEGEALL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
D VV+LDE G + S + + ++G R+ F IGGPYG ++ RA+
Sbjct: 62 RRFGDGDGVVLLDERGEQMRSVDFSAWVQKRMNSGLKRLCFVIGGPYGFSKEVYARADAK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS+M +HQ+ ++ EQLYR++TIL + YHH
Sbjct: 122 ISLSAMTFSHQMIRVLFAEQLYRAFTILNNEPYHH 156
>gi|395800918|ref|ZP_10480189.1| rRNA large subunit methyltransferase [Flavobacterium sp. F52]
gi|395436785|gb|EJG02708.1| rRNA large subunit methyltransferase [Flavobacterium sp. F52]
Length = 157
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL++ + KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ +S+ D +++LDENG S +E + ++G + F IGGPYG + ++A
Sbjct: 60 ILSKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGIKTLVFVIGGPYGFSETVYKKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L +EQLYR +TIL+ + YHH
Sbjct: 120 GKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156
>gi|420149303|ref|ZP_14656481.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 335 str. F0486]
gi|429752019|ref|ZP_19284907.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 326 str. F0382]
gi|394753912|gb|EJF37388.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 335 str. F0486]
gi|429178254|gb|EKY19535.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 157
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I+++ VGK + +Q ++D Y +L YY E LQL + KN+ + + Q E ++
Sbjct: 3 IKLLAVGKTDNPALQQLIDMYEKRLSYYINFE-LQLLPDIKNSKSLSEEQQKAKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++S +++LDE G + S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 62 GNVASSHHLILLDERGKEFTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRANGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 122 LSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|311744881|ref|ZP_07718666.1| alpha/beta knot family protein [Algoriphagus sp. PR1]
gi|311302304|gb|EAZ81603.2| alpha/beta knot family protein [Algoriphagus sp. PR1]
Length = 157
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ IR+I +GK + +Q ++DEY +L +Y K D ++ + KNT + I+ E
Sbjct: 1 MQIRLIAIGKTDNKSIQSLIDEYSKRLNFYIKF-DFEVIPDLKNTKSLSETIQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D +++LDE G S ++ + + G ++ F IGGPYG + RAN
Sbjct: 60 ILKKLTPSDELILLDERGKSYSSIDFSQFLQKKMNAGLKQLIFVIGGPYGFSEAVYARAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ +S M +HQ+ VEQLYR +TIL+ + YHH
Sbjct: 120 GKLSISKMTFSHQMIRPFFVEQLYRGFTILRNEPYHH 156
>gi|228471608|ref|ZP_04056382.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
gi|228277027|gb|EEK15713.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
Length = 157
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I+++ +GK + ++ +++EY ++ +Y K+ D+++ ++ KN ++ + Q E
Sbjct: 1 MTIKLLVIGKTDASPLEKLIEEYKKRIGFYVKI-DIKIIADLKNVKNISQQEQKSKEGAL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ +D +V+LDE G + S + A+ + +TG + F IGG YG ++ +RAN
Sbjct: 60 LLKEVAENDILVLLDERGKEYTSVEFAQYIQKVLNTGVKQCVFAIGGAYGFSSEVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
S LS M +HQ+ L VEQLYR++TIL + YHH
Sbjct: 120 HSCALSKMTFSHQMVRLFFVEQLYRAFTILNNEPYHH 156
>gi|328766155|gb|EGF76213.1| hypothetical protein BATDEDRAFT_28704 [Batrachochytrium
dendrobatidis JAM81]
Length = 159
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIK-DED 131
+ I ++TVGK + ++ + EY+ +L Y KVE +++ P+N + + ++K E
Sbjct: 1 MRISIVTVGKLKEKYLKQGIQEYLKRLTAYAKVEIIEVADEKAPENMSEAEMLEVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS+D +V+ L+ NG + SEQ+A M + + G S+I+F IGG G +++R
Sbjct: 61 ERILSHISADTYVITLEINGKMLSSEQLAAKMDELATYGKSKIAFVIGGSLGISEALQKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++++ S M HQ+ L+LVEQ+YR + I+KG+ YH
Sbjct: 121 SDMALSFSKMTFPHQLMRLILVEQVYRGFRIIKGEPYH 158
>gi|150025903|ref|YP_001296729.1| rRNA large subunit methyltransferase [Flavobacterium psychrophilum
JIP02/86]
gi|166980492|sp|A6H0Q2.1|RLMH_FLAPJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|149772444|emb|CAL43926.1| Protein of unknown function YydA [Flavobacterium psychrophilum
JIP02/86]
Length = 157
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL++ ++ KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKNLQTLIDDYTKRLSFYIKF-DLEIIADIKNVKNLSETQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+ D +++LDENG S ++ + ++G + F IGGPYG + ++
Sbjct: 60 ILSKITPTDQLILLDENGKTFSSVAFSDQLQKKMNSGIKTLVFVIGGPYGFSDDVYKKTF 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR +TILK + YHH
Sbjct: 120 GKISLSQMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156
>gi|399029908|ref|ZP_10730584.1| hypothetical protein PMI10_02423 [Flavobacterium sp. CF136]
gi|398072146|gb|EJL63374.1| hypothetical protein PMI10_02423 [Flavobacterium sp. CF136]
Length = 157
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL++ + KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKALQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ ++ D +++LDENG + S +E + ++G + F IGGPYG + +A
Sbjct: 60 ILSKLTPTDQLILLDENGKNFSSVGFSEELQKKMNSGIKTLVFVIGGPYGFSETVYTKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR +TIL+ + YHH
Sbjct: 120 GKISLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156
>gi|410029896|ref|ZP_11279726.1| rRNA large subunit methyltransferase [Marinilabilia sp. AK2]
Length = 157
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ I+++ +GK +Q ++DEY +L +Y + DL++ + KN + ++ E
Sbjct: 1 MQIKLLAIGKTDHPAIQEMIDEYSKRLGHYIRF-DLEILPDIKNAKNFTEAVQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +++LDENG S + + + G ++ F IGGPYG + +RAN
Sbjct: 60 ILKKLHPSDNLILLDENGKSYSSVDFSAFLQKKMNAGLKQLVFVIGGPYGFSDAIYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ + +EQLYRS+TIL+ + YHH
Sbjct: 120 GKLSLSKMTFSHQMVRIFFIEQLYRSFTILRNEPYHH 156
>gi|323487496|ref|ZP_08092790.1| hypothetical protein HMPREF9474_04541 [Clostridium symbiosum
WAL-14163]
gi|323694428|ref|ZP_08108599.1| ribosomal RNA large subunit methyltransferase H [Clostridium
symbiosum WAL-14673]
gi|355628532|ref|ZP_09049814.1| ribosomal RNA large subunit methyltransferase H [Clostridium sp.
7_3_54FAA]
gi|323399178|gb|EGA91582.1| hypothetical protein HMPREF9474_04541 [Clostridium symbiosum
WAL-14163]
gi|323501509|gb|EGB17400.1| ribosomal RNA large subunit methyltransferase H [Clostridium
symbiosum WAL-14673]
gi|354819781|gb|EHF04219.1| ribosomal RNA large subunit methyltransferase H [Clostridium sp.
7_3_54FAA]
Length = 159
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-KAQIKD-ED 131
+ I VITVGK + ++ + EY +L YCK+E +Q+ P +V + QIKD E
Sbjct: 1 MKITVITVGKIKEKYLEDAIAEYSKRLSRYCKLEIIQVADEKTPDRASEVVETQIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +VV L G I SE++AEL+ G G S I F IGG G K+ ER
Sbjct: 61 ERILSHIKDTAYVVALAIEGKMISSEELAELIDGLGVRGESHIQFVIGGSLGLSKKVLER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 ADYKLSFSRMTFPHQLMRVILLEQIYRSYRIVNGEPYH 158
>gi|334365267|ref|ZP_08514228.1| putative rRNA large subunit m3Psi methyltransferase RlmH [Alistipes
sp. HGB5]
gi|390947545|ref|YP_006411305.1| hypothetical protein Alfi_2341 [Alistipes finegoldii DSM 17242]
gi|313158571|gb|EFR57965.1| putative rRNA large subunit m3Psi methyltransferase RlmH [Alistipes
sp. HGB5]
gi|390424114|gb|AFL78620.1| hypothetical protein Alfi_2341 [Alistipes finegoldii DSM 17242]
Length = 157
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
I +I +GK S V +V+ Y ++ +YCK V L N KN VK Q E A++
Sbjct: 3 IELIVIGKTDSKEVASLVEMYARRVNFYCKFAVTALPDIRNTKNLS-VKQQRTAEGEAIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+S D+VV+LDE G ++ S + A + ++G R+ IGGPYG ++ +R++
Sbjct: 62 RQLSDGDYVVLLDERGDEMRSVEFAYWLQKRMNSGVKRLVLVIGGPYGFSEEVYKRSDAR 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQI + EQ+YR++TIL + YHH
Sbjct: 122 LSLSRMTFSHQIVRAIFAEQIYRAFTILNNEPYHH 156
>gi|305667294|ref|YP_003863581.1| hypothetical protein FB2170_13638 [Maribacter sp. HTCC2170]
gi|88709341|gb|EAR01574.1| hypothetical protein FB2170_13638 [Maribacter sp. HTCC2170]
Length = 157
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I+++T+GK S ++ +++EY +LK+Y K E L + + KN ++ Q + E
Sbjct: 1 MTIKLLTIGKTDSAPMRGLINEYEKRLKHYVKFE-LDILPDIKNVKNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +++ D +V+LDENG S + + + ++G ++ F IGGPYG + +A
Sbjct: 60 ILKKLNNTDVLVLLDENGKQFSSVEFSSYLQKKMNSGIKQLVFVIGGPYGFSNTVYNKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L +EQ+YRS+TILK + YHH
Sbjct: 120 GKVSLSKMTFSHQMVRLFAIEQIYRSFTILKNEPYHH 156
>gi|393779837|ref|ZP_10368071.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 412 str. F0487]
gi|392609559|gb|EIW92365.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 412 str. F0487]
Length = 157
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 91/155 (58%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I+++ VGK + +Q ++D Y +L YY E LQL + KN+ + + Q E ++
Sbjct: 3 IKLLAVGKTDNPVLQQLIDMYEKRLSYYINFE-LQLLPDIKNSKSLSEEQQKAKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++S +++LDE G ++ S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 62 GNVASSHHLILLDERGKELTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRANGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 122 LSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|373454365|ref|ZP_09546233.1| rRNA large subunit m3Psi methyltransferase RlmH [Dialister
succinatiphilus YIT 11850]
gi|371935947|gb|EHO63688.1| rRNA large subunit m3Psi methyltransferase RlmH [Dialister
succinatiphilus YIT 11850]
Length = 159
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL-----QLRSNPKNTGDVKAQIKDEDMAV 134
+T+GK + ++ +DEY+ +L KVE L ++ NP K ++ E +
Sbjct: 5 FLTIGKIKEKWMRQGIDEYLKRLSPIAKVEILSPDEEKMPENPSPALKEKV-MEKEGEKL 63
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + +D++++LD G + SE++A ++ +G S F IGGPYG+G +R+RAN+
Sbjct: 64 LKYLKDEDFLILLDLKGKPVTSEELAHIIRQKMVSGTSHFFFMIGGPYGNGENIRKRANL 123
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I +S+M HQ+A L+L EQ+YR+ I++ + YH
Sbjct: 124 KISISAMTFTHQMARLILAEQVYRAMKIIRHEPYH 158
>gi|404405346|ref|ZP_10996930.1| rRNA large subunit methyltransferase [Alistipes sp. JC136]
Length = 157
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD--VKAQIKDEDMA 133
+ + +I +GK S V +V+ Y ++ +YCK L N +NT VK Q E A
Sbjct: 1 MTLELIVIGKTDSKEVAALVELYARRVNFYCKFAVTTL-PNVRNTKSLTVKQQRTAEGEA 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D+V +LDE+G + S + A + ++G R+ IGGPYG ++ RA+
Sbjct: 60 ILRQLTDGDFVTLLDEHGTEYRSVEFALWLQKRMNSGVKRLVMVIGGPYGFSEEVYARAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQI + EQ+YR++TIL + YHH
Sbjct: 120 AKLSLSRMTFSHQIVRAIFAEQIYRAFTILNNEPYHH 156
>gi|326335617|ref|ZP_08201804.1| alpha/beta knot family protein [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692383|gb|EGD34335.1| alpha/beta knot family protein [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 157
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ +R++ +GK ++ +++EY ++K+Y K E +++ KN ++ + Q E +
Sbjct: 1 MTLRLLVIGKTEISFLEKLIEEYQKRIKFYIKFE-IEIIPALKNMKNISQEEQKNREGIL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I++++ +++LDE G + S + + + +TG + +F IGG YG P + RAN
Sbjct: 60 LLQKIANNEHLILLDERGKEYTSVEFSYFLQKIMNTGTKQCTFAIGGAYGFSPAVYARAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L VEQLYR++TIL + YHH
Sbjct: 120 GTCALSKMTFSHQMVRLFFVEQLYRAFTILNNEPYHH 156
>gi|383810559|ref|ZP_09966053.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella sp. oral taxon 306 str. F0472]
gi|383356927|gb|EID34417.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella sp. oral taxon 306 str. F0472]
Length = 156
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
++ VGK +S + +D+Y ++K+Y + + N KN + + + K+ ++ +M
Sbjct: 5 LLLVGKTQSKIFREGIDDYTSRIKHYMPFSITTIPELKNTKNLSEEQQKQKEGEL-IMKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G ++ S Q A+ + +T A R+ F IGGPYG ++ RAN I
Sbjct: 64 IQPTDTVVLLDEHGSELTSVQYADWLTRKQNT-ARRLVFVIGGPYGFSQEVYTRANDKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|256820916|ref|YP_003142195.1| rRNA large subunit methyltransferase [Capnocytophaga ochracea DSM
7271]
gi|256582499|gb|ACU93634.1| protein of unknown function DUF163 [Capnocytophaga ochracea DSM
7271]
Length = 157
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I+++ VGK + +Q ++D Y +L YY E QL + KN+ + + Q E
Sbjct: 1 MNIKLLAVGKTDNPALQQLIDMYEKRLSYYINFES-QLLPDIKNSKSLSKEQQKAKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++S +++LDE G + S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 60 ILGNVASSHHLILLDERGKEFTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 120 GKLSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|402492941|ref|ZP_10839698.1| rRNA large subunit methyltransferase [Aquimarina agarilytica ZC1]
Length = 157
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I ++ +GK SL + ++++Y +L +Y K + DL+ N T Q + E
Sbjct: 1 MTITLLAIGKTDSLQLTQLIEDYKKRLSFYIKFNFEIIPDLKKVKNLSET----QQKEKE 56
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I++ D +++LDENG S + + ++G + F IGGPYG + +
Sbjct: 57 GELILKKINTSDTLILLDENGKQFNSVDFSNYLQKHMNSGIKNLFFVIGGPYGFSETIYK 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RAN I LS M +HQ+ L ++EQLYR +TILK + YHH
Sbjct: 117 RANGKISLSKMTFSHQMVRLFIIEQLYRGFTILKNEPYHH 156
>gi|381188025|ref|ZP_09895587.1| hypothetical protein HJ01_02108 [Flavobacterium frigoris PS1]
gi|379649813|gb|EIA08386.1| hypothetical protein HJ01_02108 [Flavobacterium frigoris PS1]
Length = 157
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL + + KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKALQSLIDDYTKRLSFYIKF-DLDIIPDIKNVKNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D +++LDENG + S +E + ++G + F IGGPYG + +A
Sbjct: 60 ILAKLTPTDQLILLDENGKNFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSDTVYAKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR +TILK + YHH
Sbjct: 120 GKISLSLMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156
>gi|387792096|ref|YP_006257161.1| hypothetical protein Solca_2966 [Solitalea canadensis DSM 3403]
gi|379654929|gb|AFD07985.1| hypothetical protein Solca_2966 [Solitalea canadensis DSM 3403]
Length = 157
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I +I +GK + +D+Y +LK+Y + + + N KN + + Q K E
Sbjct: 1 MKITLIQIGKTEDKYLLEGIDKYEKRLKHYINFSTVTIPALKNTKNL-NFEEQKKKEAEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I++ D+V++LDE G S Q A+ + + + F IGGPYG K+ RAN
Sbjct: 60 ILKSINNTDYVILLDEKGKVFTSVQFADQLNKHMNRAVQNLVFIIGGPYGFDEKIYARAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS+M +HQ+ L +EQ+YR+ TILKG+ YHH
Sbjct: 120 EKLSLSTMTFSHQMVRLFFIEQIYRANTILKGEPYHH 156
>gi|429755056|ref|ZP_19287736.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 324 str. F0483]
gi|429175854|gb|EKY17270.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 157
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I+++ VGK + +Q ++D Y +L YY LQL + KN+ + + Q E ++
Sbjct: 3 IKLLAVGKTDNPALQQLIDMYEKRLSYYINF-GLQLLPDIKNSKSLSEEQQKAKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++S +++LDE G + S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 62 GNVASSHHLILLDERGKEFTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRANSK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 122 LSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|429749738|ref|ZP_19282835.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429167212|gb|EKY09136.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 157
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD--EDMA 133
+ I++I +GK S +Q ++ Y +L Y E LQL ++ KN+ + +++ E
Sbjct: 1 MNIKLIAIGKTDSAALQQLISTYEKRLVRYINFE-LQLLADIKNSKSLTEELQKIKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ + S ++++LDE G + S A+ + +T +++F IGGPYG ++ RAN
Sbjct: 60 ILSNVESSHYLILLDERGKEYTSVAFADELQKKMNTSIKQLTFVIGGPYGFSQEVYNRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L +EQLYR++TIL+ + YHH
Sbjct: 120 GKLSLSKLTFSHQMIRLFFIEQLYRAFTILRNEPYHH 156
>gi|302346481|ref|YP_003814779.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella melaninogenica ATCC 25845]
gi|302150406|gb|ADK96667.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella melaninogenica ATCC 25845]
Length = 156
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 8/155 (5%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDVKA--QIKDEDMAVM 135
+I VGK +S ++ +D+Y+ ++++Y + + P KNT + Q + E ++
Sbjct: 5 LILVGKTQSKIFKVGIDDYVSRIEHYMP---FSITTIPELKNTKSLSEDQQKQKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I D VV+LDE+G + S + A + +T A R+ F IGGPYG P + RAN
Sbjct: 62 KEIQPSDTVVLLDEHGAEFRSIEYANWLKQKQNT-ARRLVFIIGGPYGFSPDIYARANEK 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 121 ISLSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|332878598|ref|ZP_08446318.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332683499|gb|EGJ56376.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 157
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQIKDEDMAV 134
I++I VGK + +Q ++ Y +L YY DLQL + KN + + ++K+ ++ +
Sbjct: 3 IKLIAVGKTDNPALQQLISTYEKRLSYYINF-DLQLLPDIKNNKSLSEEQQKVKEGEL-I 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
++ + +++LDE G + S A+ + +TG +++F IGGPYG + +R+N
Sbjct: 61 LSYVEPSHHLILLDERGKEYTSIAFADELQKKMNTGIKQLTFVIGGPYGFSQAVYQRSNS 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 121 KLSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|85818938|gb|EAQ40097.1| predicted SPOUT methyltransferase [Dokdonia donghaensis MED134]
Length = 157
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I+++ VGK + +Q++VDEY +L +Y K +E L N KN + + + K E
Sbjct: 1 MNIKLLCVGKTDNKQLQVLVDEYSKRLNFYIKYNIETLPDIKNVKNLSEQEQKTK-EGAL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ + D +V+ DENG S ++ + ++G + F IGGPYG ++ +A
Sbjct: 60 ILSKLGPYDHLVLFDENGKSFSSVGFSKFLQKKMNSGIKTLVFVIGGPYGFSQEVYNKAI 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L + EQ+YR +TILKG+ YHH
Sbjct: 120 GKVSLSQMTFSHQMVRLFITEQIYRGFTILKGEPYHH 156
>gi|406928315|gb|EKD64140.1| hypothetical protein ACD_51C00065G0009 [uncultured bacterium]
Length = 152
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
L I ++ VGK +S L E++ +L + KVE +++ + K G I++E A+
Sbjct: 2 LKITILKVGKLKSEYTALEA-EFLKRLSSFAKVEMREIKESKKEVGPA---IEEESTALC 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ D +++ LD G SE+ A+++ G ++I+F IGGPYG + +A++
Sbjct: 58 KHLPQDSYIIALDREGKQFSSEEFAQVIKTQRDFGKTQITFVIGGPYGLSQDLMRKAHLR 117
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ S + HQ A ++L+EQ++R+ TI+ G+ YH+
Sbjct: 118 LSFSRLTFTHQFAYVILLEQIFRASTIISGKKYHY 152
>gi|386821087|ref|ZP_10108303.1| hypothetical protein JoomaDRAFT_3070 [Joostella marina DSM 19592]
gi|386426193|gb|EIJ40023.1| hypothetical protein JoomaDRAFT_3070 [Joostella marina DSM 19592]
Length = 157
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I++I VGK + ++D+Y+ +L +Y D ++ + KN ++ +AQ K+ E
Sbjct: 1 MNIKLIAVGKTDGKELNSLIDQYVKRLGFYVNF-DFEIIPDIKNVKNLSEAQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D +++LDENG SE A+ + ++G ++ F IGGPYG + +++
Sbjct: 60 ILKKLNPTDILILLDENGKTFSSEVFADYLQKHMNSGVKQLVFVIGGPYGFSDTIYKKSQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L VEQLYR +TIL+ + YHH
Sbjct: 120 GKISLSKMTFSHQMIRLFFVEQLYRGFTILRNEPYHH 156
>gi|422822817|ref|ZP_16871006.1| alpha/beta knot family protein [Streptococcus sanguinis SK405]
gi|422852635|ref|ZP_16899299.1| alpha/beta knot family protein [Streptococcus sanguinis SK160]
gi|422856246|ref|ZP_16902903.1| alpha/beta knot family protein [Streptococcus sanguinis SK1]
gi|324991869|gb|EGC23792.1| alpha/beta knot family protein [Streptococcus sanguinis SK405]
gi|325698035|gb|EGD39916.1| alpha/beta knot family protein [Streptococcus sanguinis SK160]
gi|327458493|gb|EGF04843.1| alpha/beta knot family protein [Streptococcus sanguinis SK1]
Length = 159
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q +K E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ +++M D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQIMMDTTVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|379012113|ref|YP_005269925.1| hypothetical protein Awo_c22630 [Acetobacterium woodii DSM 1030]
gi|375302902|gb|AFA49036.1| hypothetical protein Awo_c22630 [Acetobacterium woodii DSM 1030]
Length = 159
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK--AQIKDED 131
+ IR+ITVGK + + L + EY +L YC++E ++++ P+N + + ++ E
Sbjct: 1 MNIRIITVGKIKEKYLTLAIQEYAKRLNSYCRLEIIEVKDEKIPENASEAQRTKALQSEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N + D +V L+ G + S+ A+ + G G S+++F IGG G P++++R
Sbjct: 61 KRILNYLKEQDILVTLEICGDQMDSQSFAQKIETYGIQGKSQLTFVIGGSIGLCPEIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N + S M HQ+ ++L+EQ+YR++ I+ G+ YH
Sbjct: 121 SNWKLSFSEMTFPHQLFRVILLEQVYRAFKIINGETYH 158
>gi|315224107|ref|ZP_07865947.1| alpha/beta knot family protein [Capnocytophaga ochracea F0287]
gi|420159809|ref|ZP_14666605.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga ochracea str. Holt 25]
gi|314945840|gb|EFS97849.1| alpha/beta knot family protein [Capnocytophaga ochracea F0287]
gi|394761488|gb|EJF43842.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga ochracea str. Holt 25]
Length = 157
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I+++ VGK + +Q ++D Y +L YY E LQL + KN+ + + Q E ++
Sbjct: 3 IKLLAVGKTDNPALQQLIDMYEKRLSYYINFE-LQLLPDIKNSKSLSEEQQKAKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ +++LDE G + S A+ + + G +++F IGGPYG ++ +RAN
Sbjct: 62 GNVAPLHHLILLDERGKEFTSVAFADELQKKMNAGIKQLTFVIGGPYGFSKEVYDRANGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L VEQLYR++TIL+ + YHH
Sbjct: 122 LSLSKLTFSHQMIRLFFVEQLYRAFTILRNEPYHH 156
>gi|422825220|ref|ZP_16873399.1| alpha/beta knot family protein [Streptococcus sanguinis SK678]
gi|324996241|gb|EGC28151.1| alpha/beta knot family protein [Streptococcus sanguinis SK678]
Length = 159
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q +K E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLYPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|422881134|ref|ZP_16927590.1| alpha/beta knot family protein [Streptococcus sanguinis SK355]
gi|332365091|gb|EGJ42856.1| alpha/beta knot family protein [Streptococcus sanguinis SK355]
Length = 159
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|423131543|ref|ZP_17119218.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CCUG 12901]
gi|371641959|gb|EHO07538.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CCUG 12901]
Length = 157
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I+++ +GK S +Q ++DEY+ +L +Y K DL++ + KN ++ Q + E
Sbjct: 1 MNIKLLAIGKTDSKPLQTLMDEYMKRLSFYVKF-DLEVIPDIKNAKNMSEDQQKQKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I S D +++LD+ G + S A+ + ++G + F IGGPYG + + A
Sbjct: 60 ILSKIGSTDQLILLDDKGKEFTSISFADELQKKMNSGIKTLVFVIGGPYGFSEDVYKNAK 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L ++EQ+YR +TIL+ + YHH
Sbjct: 120 GKISLSRMTFSHQMIRLFIIEQIYRGFTILRNEPYHH 156
>gi|293372674|ref|ZP_06619056.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides ovatus SD CMC 3f]
gi|292632483|gb|EFF51079.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides ovatus SD CMC 3f]
Length = 166
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 71 NCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE 130
NCKR + ++ VG+ +++YI + K Y D+++ KNT + +++ E
Sbjct: 6 NCKR-MKTTLLVVGRTVEQHYITAINDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKE 63
Query: 131 DMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ + D VV+LDE+G ++ S + AE M +T R+ F IGGPYG K+
Sbjct: 64 KEGELILKALQPGDVVVLLDEHGKEMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ A+ I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 YQAAHEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|118444405|ref|YP_877050.1| rRNA large subunit methyltransferase [Clostridium novyi NT]
gi|166918999|sp|A0PXE8.1|RLMH_CLONN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|118134861|gb|ABK61905.1| conserved hypothetical protein TIGR00246 [Clostridium novyi NT]
Length = 159
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++L +DEY +L YCK+ ++L P N + I + E
Sbjct: 1 MNITIICVGKLKEKYLKLAIDEYSKRLSRYCKLNIVELNDEKTPDNASEKDELIIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + +V+ LD NG SE++AEL+GD G G S I+ IGG G ++ R
Sbjct: 61 SKILAHVKENMYVIALDLNGKMASSEELAELIGDLGLKGKSNIALVIGGSLGLSKEVLNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 158
>gi|363581989|ref|ZP_09314799.1| rRNA large subunit methyltransferase [Flavobacteriaceae bacterium
HQM9]
Length = 157
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I ++ +GK +L + ++++Y +L +Y K + ++ + K ++ +AQ KD E
Sbjct: 1 MTITLLAIGKTDNLHLIQLIEDYKKRLSFYIKF-NFEIIPDLKKVKNLSEAQQKDKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I++ D +++LDENG S ++ + ++G + F IGGPYG K+ RAN
Sbjct: 60 ILKKITTADTLILLDENGKQYNSIDFSKHLQKHMNSGIKNLFFVIGGPYGFNEKVYYRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR +TILK + YHH
Sbjct: 120 GKISLSKMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156
>gi|422872066|ref|ZP_16918559.1| alpha/beta knot family protein [Streptococcus sanguinis SK1087]
gi|328945171|gb|EGG39326.1| alpha/beta knot family protein [Streptococcus sanguinis SK1087]
Length = 159
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|332880308|ref|ZP_08447986.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047491|ref|ZP_09109096.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Paraprevotella clara YIT 11840]
gi|332681753|gb|EGJ54672.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529562|gb|EHG98989.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Paraprevotella clara YIT 11840]
Length = 157
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ I ++ VGK ++EY ++++Y D+++ +NT + + + E A
Sbjct: 1 MKITLLVVGKTNDPHFIAGIEEYAKRIRHYLPF-DIEVIPELRNTKSLSEEQQKEKEADL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ D +V+LDE+G + S ++A M + G R+ F +GGPYG P++ E+AN
Sbjct: 60 LLKAFQPGDHIVLLDEHGREHRSVELAAWMEKRMAAGLKRMVFVVGGPYGFSPRIYEKAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L+ EQ+YR+ TI+ G+ YHH
Sbjct: 120 EKVSLSRMTFSHQMIRLIFTEQIYRAMTIINGEPYHH 156
>gi|410659585|ref|YP_006911956.1| Ribosomal RNA large subunit methyltransferase H [Dehalobacter sp.
DCA]
gi|410662565|ref|YP_006914936.1| Ribosomal RNA large subunit methyltransferase H [Dehalobacter sp.
CF]
gi|409021940|gb|AFV03971.1| Ribosomal RNA large subunit methyltransferase H [Dehalobacter sp.
DCA]
gi|409024921|gb|AFV06951.1| Ribosomal RNA large subunit methyltransferase H [Dehalobacter sp.
CF]
Length = 160
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKDEDM 132
L I+++ VGK + ++ + EY +L Y ++E +++ P K + +A++K ++
Sbjct: 2 LQIKILAVGKIKENYLREGLKEYTKRLGAYIRLEMIEVEDEPCPEKASAVDEAKVKQKEA 61
Query: 133 A-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
V+ +IS D+VV+LD G ++ S ++A L + G +G SRI+F IGG G ++R+R
Sbjct: 62 EKVLKLISPQDYVVLLDLLGKELSSPELAALFDEKGLSGQSRITFVIGGSLGTADEIRKR 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S + HQ+ LVL+EQ+YR+ I KG+ YH
Sbjct: 122 ADYRWSFSKLTFPHQMIRLVLLEQIYRACKISKGEPYH 159
>gi|395218765|ref|ZP_10402337.1| rRNA large subunit methyltransferase [Pontibacter sp. BAB1700]
gi|394454091|gb|EJF08829.1| rRNA large subunit methyltransferase [Pontibacter sp. BAB1700]
Length = 157
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL---QLRSNPKNTGDVKAQIKD-ED 131
+ I++I +GK ++ + +Y+ +LK+Y +E + ++ K T D +K+ E
Sbjct: 1 MKIKLIAIGKTDEAFLEEGIQKYMKRLKHYHPLEFIIIPDIKQGGKFTAD---NLKEAEG 57
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D VV+LDE G S + A + ++ + + F IGG YG P + ER
Sbjct: 58 KLLLQKLQDGDHVVLLDEKGKTFTSTEYAHFLQKKLNSVTTNLVFIIGGAYGFSPAIYER 117
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
AN I LS M +HQ+ L VEQLYR +TIL+G+ YHH
Sbjct: 118 ANDKISLSKMTFSHQMVRLFFVEQLYRGFTILRGEKYHH 156
>gi|332293229|ref|YP_004431838.1| hypothetical protein Krodi_2594 [Krokinobacter sp. 4H-3-7-5]
gi|332171315|gb|AEE20570.1| protein of unknown function DUF163 [Krokinobacter sp. 4H-3-7-5]
Length = 157
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I+++ VGK + +Q ++D Y +L +Y K +E L N KN + + + K+ D+
Sbjct: 1 MNIKLLCVGKTDNKQLQALIDAYSKRLNFYVKYSIEILPDIKNVKNLSEQEQKNKEGDL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I D +++ DENG S ++ + ++G + F IGGPYG ++ +A
Sbjct: 60 ILSKIGPYDHLLLFDENGKTFTSVGFSKFLQKKMNSGIKTLVFVIGGPYGFSQEVYAKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LSSM +HQ+ L + EQ+YR +TILKG+ YHH
Sbjct: 120 GKVSLSSMTFSHQMVRLFITEQIYRGYTILKGEPYHH 156
>gi|88803363|ref|ZP_01118889.1| hypothetical protein PI23P_12262 [Polaribacter irgensii 23-P]
gi|88780929|gb|EAR12108.1| hypothetical protein PI23P_12262 [Polaribacter irgensii 23-P]
Length = 157
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I+++ +GK + +++EY +LK+Y K +E + N KN +++ + K E
Sbjct: 1 MKIKLLVIGKTDHKSLLQLIEEYKNRLKHYIKFEIETIPDIKNVKNLSEIQQKEK-EGTL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ + + D +V+LD+ G S + +E + + G ++ F IGGPYG + ++AN
Sbjct: 60 ILSKLQNTDQLVLLDDKGKHYSSVEFSEYLQKKMNAGIKQLVFVIGGPYGFSDDVYKKAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L ++EQLYR +TILK + YHH
Sbjct: 120 EKMSLSKMTFSHQMIRLFIIEQLYRGFTILKNEPYHH 156
>gi|372210757|ref|ZP_09498559.1| rRNA large subunit methyltransferase [Flavobacteriaceae bacterium
S85]
Length = 157
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I ++ VGK + ++ Y +L++Y K D ++ + KN ++ Q + E +
Sbjct: 1 MKILLLAVGKTDDSNLNQLIQTYQNRLQHYIKF-DFEIIPDLKNVKNLSENQQKEKEGLM 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +++ D +++LDE G D S + A+ + + G ++ F IGGPYG + ++A
Sbjct: 60 ILKKLTATDQLILLDEKGKDFTSMRFADYLQKKMNAGIKQLVFVIGGPYGFSEAVYQKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +VEQLYR +TILK + YHH
Sbjct: 120 GKISLSKMTFSHQMIRLFMVEQLYRGFTILKNEPYHH 156
>gi|422880547|ref|ZP_16927010.1| alpha/beta knot family protein [Streptococcus sanguinis SK1059]
gi|422929976|ref|ZP_16962916.1| alpha/beta knot family protein [Streptococcus sanguinis ATCC 29667]
gi|422930439|ref|ZP_16963370.1| alpha/beta knot family protein [Streptococcus sanguinis SK340]
gi|332363603|gb|EGJ41384.1| alpha/beta knot family protein [Streptococcus sanguinis SK1059]
gi|339613609|gb|EGQ18345.1| alpha/beta knot family protein [Streptococcus sanguinis ATCC 29667]
gi|339621224|gb|EGQ25787.1| alpha/beta knot family protein [Streptococcus sanguinis SK340]
Length = 159
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMVELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|255523996|ref|ZP_05390958.1| protein of unknown function DUF163 [Clostridium carboxidivorans P7]
gi|296186855|ref|ZP_06855256.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
carboxidivorans P7]
gi|255512283|gb|EET88561.1| protein of unknown function DUF163 [Clostridium carboxidivorans P7]
gi|296048569|gb|EFG88002.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
carboxidivorans P7]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I +I VGK + ++ ++EY +L YCK++ +++ P N + + QIKD E
Sbjct: 1 MNISIICVGKLKEKYLKEAINEYSKRLSRYCKLDIIEVPDEKTPDNASEKEELQIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++++ I S+ +V LD G + SEQ+A + DAG G S ++F IGG G ++ R
Sbjct: 61 LSILKHIKSNMFVTALDLKGSMLSSEQLASFIKDAGINGNSNLAFIIGGSLGLSSQVLSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 121 ADFKLCFSKMTFPHQLMRVILLEQIYRGYRIISGEPYH 158
>gi|340347797|ref|ZP_08670900.1| SPOUT methyltransferase superfamily protein [Prevotella dentalis
DSM 3688]
gi|433652670|ref|YP_007296524.1| hypothetical protein Prede_1719 [Prevotella dentalis DSM 3688]
gi|339608498|gb|EGQ13391.1| SPOUT methyltransferase superfamily protein [Prevotella dentalis
DSM 3688]
gi|433303203|gb|AGB29018.1| hypothetical protein Prede_1719 [Prevotella dentalis DSM 3688]
Length = 156
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 8/151 (5%)
Query: 82 TVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVMNIIS 139
TV K + G+ D+Y+G+ +Y E +++ KNT + Q + E + ++
Sbjct: 11 TVNKHFAAGI----DDYVGRTAHYMPFE-VKVIPELKNTKSLTESQQKEREGELALKLLQ 65
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
D +V+LDE+G ++ S + A + A A R+ F IGGPYG P + ERAN + LS
Sbjct: 66 PSDTLVLLDEHGQELRSVEFAAWL-QARQNTARRLVFLIGGPYGFSPAVYERANEKLSLS 124
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
M +HQ+ LV EQ+YR+ TI++G+ YHH
Sbjct: 125 RMTFSHQMVRLVFAEQIYRACTIMRGEPYHH 155
>gi|422850471|ref|ZP_16897141.1| alpha/beta knot family protein [Streptococcus sanguinis SK150]
gi|325695757|gb|EGD37656.1| alpha/beta knot family protein [Streptococcus sanguinis SK150]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYVKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLYPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|404369563|ref|ZP_10974897.1| ribosomal RNA large subunit methyltransferase H 1 [Clostridium sp.
7_2_43FAA]
gi|226914493|gb|EEH99694.1| ribosomal RNA large subunit methyltransferase H 1 [Clostridium sp.
7_2_43FAA]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKA-QIKD-ED 131
+ I +I+VGK + ++ +DEY +L YCK++ +LQ P N + + QIKD E
Sbjct: 1 MNITIISVGKLKEKYLKQAIDEYSKRLSRYCKLDIIELQDEKTPDNASEKEELQIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ +D G ++ SEQ A + + G G S I+F IGG G ++ +R
Sbjct: 61 ELILSKIKDNMFVIAMDLKGENLTSEQFANYIENCGVMGNSNIAFIIGGSLGLSQRVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ANYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYH 158
>gi|421077845|ref|ZP_15538807.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans JBW45]
gi|392524098|gb|EIW47262.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans JBW45]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I VGK + + + + E++ +L YC+ V++ ++ NP + K +K E
Sbjct: 1 MKITIIAVGKIKEKYLTMGIAEFVKRLTPYCRLSIIEVDEERMPENPSDAEKAKVLLK-E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + + +++LD G SE++AE + D G +G S ++F IGG +G P + +
Sbjct: 60 GERMLKHVKDNTHLIVLDVIGKQASSEELAEKISDLGVSGKSDVTFIIGGAFGLSPDLLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A + S M HQ+ L+LVEQ+YR++ I +G+NYHH
Sbjct: 120 AAKERLSFSKMTFTHQMIRLLLVEQIYRAFKINRGENYHH 159
>gi|422861116|ref|ZP_16907758.1| alpha/beta knot family protein [Streptococcus sanguinis SK330]
gi|327467741|gb|EGF13235.1| alpha/beta knot family protein [Streptococcus sanguinis SK330]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILSKINEREFVIALAIEGKQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR + I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRVFMIQQGSPYH 158
>gi|422849787|ref|ZP_16896463.1| alpha/beta knot family protein [Streptococcus sanguinis SK115]
gi|325689351|gb|EGD31357.1| alpha/beta knot family protein [Streptococcus sanguinis SK115]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMVELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++ M D G S I+F IGG G P +++R
Sbjct: 61 NKILSKINEREFVIALAIEGKQFPSEKFSQFMMDTTVHGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|282858874|ref|ZP_06268015.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella bivia JCVIHMP010]
gi|424899215|ref|ZP_18322761.1| hypothetical protein PrebiDRAFT_1998 [Prevotella bivia DSM 20514]
gi|282588335|gb|EFB93499.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella bivia JCVIHMP010]
gi|388593429|gb|EIM33667.1| hypothetical protein PrebiDRAFT_1998 [Prevotella bivia DSM 20514]
Length = 156
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+I VGK + Q +++Y ++ +Y + + N K+ + + + K+ ++ + I
Sbjct: 5 LILVGKTTNKIFQTGINDYTERIGHYIPFNITTIPELKNTKSLSEEQQKQKEGELILKEI 64
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+SSD VV+LDE G D S + AE + +T A R+ F IGGPYG + +RAN I
Sbjct: 65 LSSDT-VVLLDERGKDFRSIEYAEWLRQRQAT-ARRLVFVIGGPYGFSKDVYDRANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|422857300|ref|ZP_16903950.1| alpha/beta knot family protein [Streptococcus sanguinis SK1057]
gi|422877637|ref|ZP_16924107.1| alpha/beta knot family protein [Streptococcus sanguinis SK1056]
gi|327463831|gb|EGF10147.1| alpha/beta knot family protein [Streptococcus sanguinis SK1057]
gi|332359499|gb|EGJ37318.1| alpha/beta knot family protein [Streptococcus sanguinis SK1056]
Length = 159
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ +++M D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQIMMDTTVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|402846388|ref|ZP_10894701.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas sp. oral taxon 279 str. F0450]
gi|402268089|gb|EJU17476.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas sp. oral taxon 279 str. F0450]
Length = 157
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL----RSNPKNTGDVKAQIKDEDMAVM 135
++ VGK S ++ + Y +L +Y LQ+ R + K T +++ Q+ E ++
Sbjct: 5 LLAVGKTDSRAIEELTKLYADRLGHYLPF-TLQIIPDIRRSSKLTPELQKQM--EGAEIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
S+ D VV+ DE G + S A + +GA R+ F IGGPYG ++ +RA+
Sbjct: 62 RQTSTSDRVVLFDERGREFSSTAFASYIERVMVSGARRLVFVIGGPYGFSEEVYKRADDR 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L VEQLYR+ TIL+G+ YHH
Sbjct: 122 VSLSQMTFSHQMVRLFAVEQLYRAQTILRGEPYHH 156
>gi|167762321|ref|ZP_02434448.1| hypothetical protein BACSTE_00674 [Bacteroides stercoris ATCC
43183]
gi|167699964|gb|EDS16543.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides stercoris ATCC 43183]
Length = 157
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ + ++ VG+ +++YI + + Y D+++ KNT + A ++ E
Sbjct: 1 MKMTLLVVGRTVEQHFITAINDYIQRTRRYLSF-DMEVIPELKNTKSLSADVQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D VV+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ E A+
Sbjct: 60 ILKALQPGDVVVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYEAAH 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 120 EKLSLSRMTFSHQMIRLIFVEQLYRAMTILNGGPYHH 156
>gi|288802469|ref|ZP_06407908.1| methyltransferase superfamily protein [Prevotella melaninogenica
D18]
gi|288334997|gb|EFC73433.1| methyltransferase superfamily protein [Prevotella melaninogenica
D18]
Length = 156
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 8/155 (5%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDVKA--QIKDEDMAVM 135
+I VGK +S ++ +D+Y+ ++++Y + + P KNT + Q + E ++
Sbjct: 5 LILVGKTQSKIFKVGIDDYVSRIEHYMP---FSITTIPELKNTKSLSEDQQKQKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I D VV+LDE+G S + A + +T A R+ F IGGPYG P + RAN
Sbjct: 62 KEIQPSDTVVLLDEHGAVFRSVEYANWLKQKQNT-ARRLIFIIGGPYGFSPDVYARANEK 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 121 ISLSCMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|374600207|ref|ZP_09673209.1| Ribosomal RNA large subunit methyltransferase H [Myroides odoratus
DSM 2801]
gi|423325371|ref|ZP_17303212.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CIP 103059]
gi|373911677|gb|EHQ43526.1| Ribosomal RNA large subunit methyltransferase H [Myroides odoratus
DSM 2801]
gi|404606653|gb|EKB06193.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CIP 103059]
Length = 157
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I+++ +GK + +Q ++++Y+ +L +Y K D+++ ++ KN ++ Q + E
Sbjct: 1 MNIKLLAIGKTDNKELQTLMNDYMKRLSFYVKF-DMEIIADIKNAKNLSEAQQKQKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+ D++++LDE G + S A+ + + G + F IGGPYG ++ + A
Sbjct: 60 ILSKINPTDFLILLDEKGKEFTSVGFADELQKRMNAGIKTLVFVIGGPYGFSEEVYQNAK 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L ++EQLYR +TIL+ + YHH
Sbjct: 120 GKISLSKMTFSHQMIRLFIIEQLYRGFTILRNEPYHH 156
>gi|336405992|ref|ZP_08586657.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
1_1_30]
gi|345508242|ref|ZP_08787874.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
D1]
gi|423216071|ref|ZP_17202597.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
xylanisolvens CL03T12C04]
gi|335936047|gb|EGM97988.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
1_1_30]
gi|345455176|gb|EEO50575.2| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
D1]
gi|392691172|gb|EIY84421.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
xylanisolvens CL03T12C04]
Length = 166
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 71 NCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE 130
NC+R + ++ VG+ +++YI + K Y D+++ KNT + +++ E
Sbjct: 6 NCRR-MKTTLLVVGRTVEQHYITAINDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKE 63
Query: 131 DMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ + D VV+LDE+G ++ S + AE M +T R+ F IGGPYG K+
Sbjct: 64 KEGELILKALQPGDVVVLLDEHGKEMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ A+ I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 YQAAHEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|297568683|ref|YP_003690027.1| protein of unknown function DUF163 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924598|gb|ADH85408.1| protein of unknown function DUF163 [Desulfurivibrio alkaliphilus
AHT2]
Length = 156
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ-IKDEDMAVMN 136
+I GK + + VD++ +L Y +E L++ GD +A+ I++E +++
Sbjct: 3 FEIIYPGKTKEDYLARGVDDFAQRLSRYIDLELKALKAPRPGKGDDEARLIREEGRLLLS 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I D VV LD G + S ++A+L+G+ G SR+ F +GGP G ++ RA+ ++
Sbjct: 63 RIPDDTLVVALDPGGRLLSSPELADLLGNWQEQGRSRLVFVLGGPLGLSAEVLSRADFTL 122
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS M H++A L+L+EQLYR+W+I G YH
Sbjct: 123 SLSPMTFTHEMARLLLLEQLYRAWSIRLGTGYH 155
>gi|422822778|ref|ZP_16870971.1| alpha/beta knot family protein [Streptococcus sanguinis SK353]
gi|324989575|gb|EGC21521.1| alpha/beta knot family protein [Streptococcus sanguinis SK353]
Length = 159
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++LM DA G S I+F IGG G P +++R
Sbjct: 61 NKILSKINEREFVIALAIEGKQFPSEKFSQLMMDATVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A + + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 AILLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|345867198|ref|ZP_08819215.1| ribosomal RNA large subunit methyltransferase H [Bizionia
argentinensis JUB59]
gi|344048412|gb|EGV44019.1| ribosomal RNA large subunit methyltransferase H [Bizionia
argentinensis JUB59]
Length = 157
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I+++ +GK + +Q ++D+Y +L +Y K E DL+ KN + + + K+
Sbjct: 1 MTIKLLAIGKTDNKQLQALIDDYQKRLSHYIKFEFEIIPDLK---KVKNLSETQQKDKEG 57
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ ++ +S D +++LDENG + S +E + ++G ++ F IGGPYG + +
Sbjct: 58 EL-ILAKLSPTDTLILLDENGKQLHSVGFSEYIQKYMNSGIKQLVFVIGGPYGFSEAVYQ 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+A + LS M +HQ+ L +VEQ YR++TILK + YHH
Sbjct: 117 KAQGKMSLSKMTFSHQMIRLFIVEQFYRAFTILKNEPYHH 156
>gi|323350826|ref|ZP_08086485.1| alpha/beta knot family protein [Streptococcus sanguinis VMC66]
gi|322123000|gb|EFX94703.1| alpha/beta knot family protein [Streptococcus sanguinis VMC66]
Length = 159
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CK+E ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKMEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|374386195|ref|ZP_09643695.1| rRNA large subunit m3Psi methyltransferase RlmH [Odoribacter laneus
YIT 12061]
gi|373224124|gb|EHP46464.1| rRNA large subunit m3Psi methyltransferase RlmH [Odoribacter laneus
YIT 12061]
Length = 157
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ I ++ +GK + ++ ++EY ++ Y E +++ S+ KN+ + +++ E
Sbjct: 1 MKICLLVIGKTDAAYIRAGIEEYEKRMGKYVNYE-MKVLSDVKNSKHMSEEVQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + + D+VV+LDE G + S + + + G R+ F IGGPYG K+ ER N
Sbjct: 60 LLEQLQTGDFVVLLDEKGKQLNSVEFSTYVAQKMQLGIKRMVFIIGGPYGFTGKVYERGN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ ++ +EQLYR+ TI KG+ YHH
Sbjct: 120 DKISLSKMTFSHQMVRMIFIEQLYRAMTIWKGEPYHH 156
>gi|294673470|ref|YP_003574086.1| hypothetical protein PRU_0727 [Prevotella ruminicola 23]
gi|294473052|gb|ADE82441.1| conserved hypothetical protein [Prevotella ruminicola 23]
Length = 156
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMAVMNI 137
+I VGK Q +++Y+ ++ +Y E + + KNT + +AQ K E ++
Sbjct: 5 LILVGKTTDKHFQAGINDYVDRIGHYMPFELITI-PELKNTKSLSEAQQKTTEGELILKQ 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S + A+ + +T A R+ F +GGPYG P++ RAN +
Sbjct: 64 IQPSDTVVLLDEHGKEFRSIEFAKWLEQKRNT-ARRLVFVVGGPYGFSPEVYARANEQLS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ LV EQ+YR+ TI+KG+ YHH
Sbjct: 123 LSKMTFSHQMIRLVFTEQIYRACTIIKGEPYHH 155
>gi|336414510|ref|ZP_08594856.1| ribosomal RNA large subunit methyltransferase H [Bacteroides ovatus
3_8_47FAA]
gi|335933622|gb|EGM95624.1| ribosomal RNA large subunit methyltransferase H [Bacteroides ovatus
3_8_47FAA]
Length = 166
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 71 NCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE 130
NC+R + ++ VG+ +++YI + K Y D+++ KNT + +++ E
Sbjct: 6 NCRR-MKTTLLVVGRTVEQHYITAINDYIQRTKRYFTF-DMEVIPELKNTKSLSMEVQKE 63
Query: 131 DMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ + D VV+LDE+G ++ S + AE M +T R+ F IGGPYG K+
Sbjct: 64 KEGELILKALQPGDVVVLLDEHGKEMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ A+ I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 YQVAHEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|326793172|ref|YP_004310993.1| hypothetical protein Clole_4121 [Clostridium lentocellum DSM 5427]
gi|326543936|gb|ADZ85795.1| Conserved hypothetical protein CHP00246 [Clostridium lentocellum
DSM 5427]
Length = 159
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I +I VGK + + ++EY +L YCK+ ++L P N + + QIK+ E
Sbjct: 1 MKIEIICVGKLKEKYLVQAINEYSKRLSRYCKLSIIELADEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS +VV LD NG + SE++A M D G G S I F IGG G +R+R
Sbjct: 61 EKILSKISDSAYVVALDLNGKMLSSEELASFMADCGVRGNSHIVFVIGGSLGLSDAVRQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR + I + YH
Sbjct: 121 ANYKLCFSKMTFPHQLFRVMLLEQIYRGFRINNNEPYH 158
>gi|422864842|ref|ZP_16911467.1| alpha/beta knot family protein [Streptococcus sanguinis SK1058]
gi|327490335|gb|EGF22122.1| alpha/beta knot family protein [Streptococcus sanguinis SK1058]
Length = 159
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR + I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRVFMIQQGSPYH 158
>gi|333383706|ref|ZP_08475362.1| ribosomal RNA large subunit methyltransferase H [Dysgonomonas gadei
ATCC BAA-286]
gi|332827364|gb|EGK00121.1| ribosomal RNA large subunit methyltransferase H [Dysgonomonas gadei
ATCC BAA-286]
Length = 157
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I ++ +GK + V EY +L++Y E +Q+ + KNT + A Q + E
Sbjct: 1 MKITLLVIGKTDAGYFIDAVSEYQKRLEHYIPFE-IQVIPDIKNTKSLTADQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + + D++V+LD+ G + S Q A + T A R+ F IGGPYG + ++AN
Sbjct: 60 ILRSLQAGDYLVLLDDKGKEYTSMQFAAYIEKKTHTVAKRLVFLIGGPYGFARSVYDKAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L+ VEQLYR+ TIL + YHH
Sbjct: 120 EKLTLSRMTFSHQMVRLIFVEQLYRAMTILNNEPYHH 156
>gi|429740713|ref|ZP_19274389.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas catoniae F0037]
gi|429160249|gb|EKY02723.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas catoniae F0037]
Length = 157
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVK----AQIKDEDMAVM 135
++ +GK S ++ + Y +LK+Y E LR P K Q + E + ++
Sbjct: 5 LLVLGKTDSAQIETEIKRYESRLKHYLPFE---LRVIPDVRRGSKLTPEEQKRAEGIELL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I+ D V + DE G S A + +G R+ F IGGPYG P++ ERA+
Sbjct: 62 RYITPTDRVYLFDERGESYTSRAFATFIERVMVSGERRLVFIIGGPYGFSPEVYERADGQ 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L +EQLYR+ TI++G+ YHH
Sbjct: 122 VSLSRMTFSHQMVRLFAIEQLYRAQTIIRGEPYHH 156
>gi|429737916|ref|ZP_19271751.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella saccharolytica F0055]
gi|429161469|gb|EKY03868.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella saccharolytica F0055]
Length = 156
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I ++ VGK S +D+Y ++ +Y L + KNT + + Q K E
Sbjct: 1 MKIELLLVGKTNSRTFIEGIDDYTKRINHYLPF-TLTIIPELKNTKSLSERQQKKAESEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D+VV+LDE+G + S + A + R+ F +GGPYG P + RAN
Sbjct: 60 ILRKLQPSDYVVLLDEHGKEFRSIEFAAWL-QRKQHAVQRLVFVVGGPYGFAPDLYNRAN 118
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L+ EQ+YR+ TILKG+ YHH
Sbjct: 119 EQLSLSKMTFSHQMIRLIFTEQIYRACTILKGEPYHH 155
>gi|401681785|ref|ZP_10813681.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
AS14]
gi|400185790|gb|EJO20015.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
AS14]
Length = 159
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P +++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASNLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLMMDTTVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|168186956|ref|ZP_02621591.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295059|gb|EDS77192.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 159
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++L +DEY +L YCK+ ++L P N + I + E
Sbjct: 1 MNITIICVGKIKEKYLKLAIDEYSKRLSRYCKLNFIELNDEKTPDNASEKDELIIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ LD NG + SE++A L+ + G TG S I+ IGG G ++ +R
Sbjct: 61 SKILAHIKENMYVIALDINGKMVSSEELANLVDNLGVTGKSNIALVIGGSLGLAKEVLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRVILLEQVYRAYKINTGEPYH 158
>gi|125719155|ref|YP_001036288.1| rRNA large subunit methyltransferase [Streptococcus sanguinis SK36]
gi|166987454|sp|A3CRD3.1|RLMH_STRSV RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|125499072|gb|ABN45738.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 159
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELANEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGNQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLYPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|163755347|ref|ZP_02162467.1| hypothetical protein KAOT1_08003 [Kordia algicida OT-1]
gi|161324767|gb|EDP96096.1| hypothetical protein KAOT1_08003 [Kordia algicida OT-1]
Length = 157
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I+++ +G+ +Q ++D+Y+ +L +Y K L++ + KNT ++ +AQ K+ E
Sbjct: 1 MNIKLLAIGRTDDKQLQQLIDQYVKRLSHYIKF-TLEIIPDLKNTKNLSEAQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D +++LDENG S + + + G + F IGGPYG + +A
Sbjct: 60 ILKKLAPTDVLILLDENGKQFSSIDFSNYLQKRMNAGIKTLVFVIGGPYGFSENVYAKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L +VEQLYR++TIL+ + YHH
Sbjct: 120 GKVSLSKMTFSHQMVRLFVVEQLYRAFTILRNEPYHH 156
>gi|390445344|ref|ZP_10233094.1| rRNA large subunit methyltransferase [Nitritalea halalkaliphila
LW7]
gi|389662463|gb|EIM74028.1| rRNA large subunit methyltransferase [Nitritalea halalkaliphila
LW7]
Length = 183
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAV 134
++ I++I +GK ++ + +Y+ +L++Y KVE L++ + K ++ + E AV
Sbjct: 26 SMQIKIIAIGKTDERELEALYAKYLKRLQFYLKVE-LEVIPDIKGAKNLSESSQKEKEAV 84
Query: 135 MNI--ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + I D V +LDE G S++ +E + G ++ IGGPYG + +RA
Sbjct: 85 LFLKRIQDSDRVYLLDEGGKLFTSKEFSEFWQKQMNAGWKQVILLIGGPYGFDSTIYDRA 144
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ ++ LS M +HQ+ L L+EQ+YR++TIL G+ YHH
Sbjct: 145 DGTLSLSKMTFSHQMVRLFLLEQVYRAYTILNGEPYHH 182
>gi|373109890|ref|ZP_09524164.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CCUG 10230]
gi|371643905|gb|EHO09448.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CCUG 10230]
Length = 157
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVM 135
I+++ +GK S +Q ++DEY+ +L +Y K DL++ + KN ++ Q + E ++
Sbjct: 3 IKLLAIGKTDSKPLQTLMDEYMKRLSFYVKF-DLEVIPDIKNAKNMSEDQQKQKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ I D +++LD+ G + S A+ + ++G + F IGGPYG + + A
Sbjct: 62 SKIGPTDQLILLDDKGKEFTSISFADELQKKMNSGIKTLVFVIGGPYGFSEDVYKNAKGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L ++EQ+YR +TIL+ + YHH
Sbjct: 122 ISLSRMTFSHQMIRLFIIEQIYRGFTILRNEPYHH 156
>gi|422847877|ref|ZP_16894560.1| alpha/beta knot family protein [Streptococcus sanguinis SK72]
gi|422863850|ref|ZP_16910480.1| alpha/beta knot family protein [Streptococcus sanguinis SK408]
gi|325686474|gb|EGD28503.1| alpha/beta knot family protein [Streptococcus sanguinis SK72]
gi|327471605|gb|EGF17048.1| alpha/beta knot family protein [Streptococcus sanguinis SK408]
Length = 159
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGNQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLYPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|160891836|ref|ZP_02072839.1| hypothetical protein BACUNI_04293 [Bacteroides uniformis ATCC 8492]
gi|317480319|ref|ZP_07939420.1| hypothetical protein HMPREF1007_02537 [Bacteroides sp. 4_1_36]
gi|156858314|gb|EDO51745.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides uniformis ATCC 8492]
gi|316903494|gb|EFV25347.1| hypothetical protein HMPREF1007_02537 [Bacteroides sp. 4_1_36]
Length = 157
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++Y+ + K Y E +++ KNT + +++ E ++
Sbjct: 5 LLVVGRTVEQHFITAINDYVQRTKRYLSFE-MEVIPELKNTKSLSMEVQKEKEGELILKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ E A+ +
Sbjct: 64 LQPGDVVVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYEAAHEKMS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 124 LSRMTFSHQMVRLIFVEQLYRAMTILNGGPYHH 156
>gi|270296475|ref|ZP_06202675.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|423303181|ref|ZP_17281180.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
uniformis CL03T00C23]
gi|423308100|ref|ZP_17286090.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
uniformis CL03T12C37]
gi|270273879|gb|EFA19741.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|392688411|gb|EIY81696.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
uniformis CL03T00C23]
gi|392689085|gb|EIY82368.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
uniformis CL03T12C37]
Length = 169
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 73 KRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM 132
+ ++ ++ VG+ +++Y+ + K Y E +++ KNT + +++ E
Sbjct: 10 RTSMKTTLLVVGRTVEQHFITAINDYVQRTKRYLSFE-MEVIPELKNTKSLSMEVQKEKE 68
Query: 133 A--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + D VV+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ E
Sbjct: 69 GELILKALQPGDVVVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYE 128
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A+ + LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 129 AAHEKMSLSRMTFSHQMVRLIFVEQLYRAMTILNGGPYHH 168
>gi|422883012|ref|ZP_16929461.1| alpha/beta knot family protein [Streptococcus sanguinis SK49]
gi|332364161|gb|EGJ41938.1| alpha/beta knot family protein [Streptococcus sanguinis SK49]
Length = 159
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELADEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++L+ D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGKQFPSEKFSQLIIDTTVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|291550423|emb|CBL26685.1| conserved hypothetical protein TIGR00246 [Ruminococcus torques
L2-14]
Length = 159
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-KAQIKDEDM 132
+ I +ITVGK + ++ + EY +L YCK+E +++ P + DV + I+D++
Sbjct: 1 MKITLITVGKIKEKYLRDAIAEYSKRLSRYCKLEIIEVADEKTPDHASDVVENTIRDKEA 60
Query: 133 A-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M + D +V+ L+ NG + SE+++ + G G S I+F IGG G G ++ R
Sbjct: 61 ERIMKYVKEDAYVITLEINGKLLSSEELSAKINQLGIQGTSHITFIIGGSIGLGKEVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 SDYALSFSKMTFPHQLMRVILLEQIYRSYRIINGEPYH 158
>gi|372221763|ref|ZP_09500184.1| rRNA large subunit methyltransferase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 157
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I+V+ +GK + +++ Y +L +Y E + + N KN +++ Q K E
Sbjct: 1 MKIQVVAIGKTDKKELNTLIEHYTNRLTHYVPFELIIIPDIKNVKNLSEME-QKKKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D + +LDENG S +E++ ++G + F IGGPYG + RAN
Sbjct: 60 ILAKLQPADHLCLLDENGKQFSSVGFSEILQKRMNSGIKNLIFAIGGPYGFSDALYARAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQ+YR++TIL+ + YHH
Sbjct: 120 SKISLSKMTFSHQMVRLFTIEQIYRAFTILRNEPYHH 156
>gi|375255682|ref|YP_005014849.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Tannerella forsythia ATCC 43037]
gi|363406268|gb|AEW19954.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Tannerella forsythia ATCC 43037]
Length = 157
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I ++TVGK + + + EY +L++Y E LQ KNT ++ Q E + +
Sbjct: 3 IVLLTVGKTEASFWKEALAEYQRRLQHYVPFE-LQALPEVKNTKNLTMSQQKTQEGVLIR 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ + DW V+LDE G + S Q A + + R+ F IGGPYG ++ + A+
Sbjct: 62 KAMQAGDWFVLLDEQGKEYTSMQFAAYLEKKIQIVSRRLVFVIGGPYGFSDEVYQMASER 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ + VEQLYR+ TIL+G+ YHH
Sbjct: 122 LSLSKMTFSHQMIRPIFVEQLYRAMTILRGEPYHH 156
>gi|375147221|ref|YP_005009662.1| ribosomal RNA large subunit methyltransferase H [Niastella
koreensis GR20-10]
gi|361061267|gb|AEW00259.1| Ribosomal RNA large subunit methyltransferase H [Niastella
koreensis GR20-10]
Length = 157
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-----DVKAQIKDE 130
+ I+ ++GK V+ ++++ +L Y VE L PKN G D+K K E
Sbjct: 1 MKIQCWSIGKNHESYVKEGIEDFTRRLSKYFPVE-WNLIPTPKNAGMLSEMDLK---KKE 56
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + DD++V+LDE G S Q+AE + + + F IGG YG + +
Sbjct: 57 GETILEWLKKDDYLVLLDERGHSFTSPQLAEFLQTRANDSVKTLVFLIGGVYGVDEAVFK 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RAN + LS +V HQ+ L+L EQLYR+ TIL+ + YHH
Sbjct: 117 RANTTWSLSKLVFPHQLVRLILAEQLYRACTILRNEKYHH 156
>gi|357042432|ref|ZP_09104137.1| ribosomal RNA large subunit methyltransferase H [Prevotella
histicola F0411]
gi|355369384|gb|EHG16779.1| ribosomal RNA large subunit methyltransferase H [Prevotella
histicola F0411]
Length = 156
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
+I VGK ++ ++ +DEY+ ++ +Y + + KNT + + Q + E ++
Sbjct: 5 LILVGKTQNKVFKVGIDEYVSRIGHYIPF-SIIIIPELKNTKSLSEEQQKQKEGELILKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G+++ S + A+ + + R+ F IGGPYG P + R+N I
Sbjct: 64 IHPGDTVVLLDEHGMELRSVEYAKWLKQKQNI-TRRLVFIIGGPYGFSPNIYARSNEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|288800034|ref|ZP_06405493.1| alpha/beta knot family protein [Prevotella sp. oral taxon 299 str.
F0039]
gi|288333282|gb|EFC71761.1| alpha/beta knot family protein [Prevotella sp. oral taxon 299 str.
F0039]
Length = 156
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMN 136
+I +GK + +++Y ++ +Y + N K+T ++ ++ E ++
Sbjct: 4 ELIVIGKTVDKHIIACIEDYNKRISHYVSF-GITTIPNIKDTKNMSEDVQKEKEGEMILK 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+I D VV+LDE+G S + AE + + A ++ F IGGPYG PK+ ERAN +
Sbjct: 63 MIQPSDHVVLLDEHGKSFRSIEFAEWI-EQKQIHARKLIFVIGGPYGFSPKVYERANEKL 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ +EQ+YR+ TI+KG+ YHH
Sbjct: 122 SLSKMTFSHQMIRLIFIEQIYRACTIIKGEPYHH 155
>gi|345882952|ref|ZP_08834404.1| ribosomal RNA large subunit methyltransferase H [Prevotella sp.
C561]
gi|345044289|gb|EGW48332.1| ribosomal RNA large subunit methyltransferase H [Prevotella sp.
C561]
Length = 156
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVMNI 137
+I VGK +S ++ +D+Y+ ++++Y ++ + KNT + Q + E ++
Sbjct: 5 LILVGKTQSKIFKVGIDDYVSRIEHYMPF-NITIIPELKNTKSLSEDQQKQKEGELILKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S + A + +T A R+ F IGGPYG + RAN I
Sbjct: 64 IQPSDTVVLLDEHGAEYRSVEYANWLKQKQNT-ARRLVFIIGGPYGFSSDVYVRANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|317474173|ref|ZP_07933450.1| hypothetical protein HMPREF1016_00429 [Bacteroides eggerthii
1_2_48FAA]
gi|316909744|gb|EFV31421.1| hypothetical protein HMPREF1016_00429 [Bacteroides eggerthii
1_2_48FAA]
Length = 157
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++YI + + Y E +++ KNT + +++ E ++
Sbjct: 5 LLVVGRTVEQHFITAINDYIQRTRRYLSFE-MEVIPELKNTKSLSFEVQKEKEGELILKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ E A+ +
Sbjct: 64 LQPGDVVVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYEAAHEKLS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 124 LSRMTFSHQMIRLIFVEQLYRAMTILNGGPYHH 156
>gi|86133179|ref|ZP_01051761.1| conserved hypothetical protein [Polaribacter sp. MED152]
gi|85820042|gb|EAQ41189.1| conserved hypothetical protein [Polaribacter sp. MED152]
Length = 157
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I+++ +GK + + L++DEY +LK+Y K E L + + KN ++ Q + E
Sbjct: 1 MKIKLLAIGKTDNKQLSLLIDEYQNRLKHYIKFE-LDIIPDIKNVKNLSELQQKEKEGEQ 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + + D +V+LD+ G S + ++ + + G ++ IGGPYG + ++A
Sbjct: 60 ILKKLQNTDVLVLLDDKGKHFTSIEFSKYLQKKMNAGLKQLVLVIGGPYGFSDAVYQKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +VEQLYR +TILK + YHH
Sbjct: 120 GKISLSKMTFSHQMIRLFIVEQLYRGFTILKNEPYHH 156
>gi|399886968|ref|ZP_10772845.1| rRNA large subunit methyltransferase [Clostridium arbusti SL206]
Length = 159
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI---KDE 130
+ I +ITVGK + ++ +DEY +L YCK++ ++Q P N +K ++ E
Sbjct: 1 MNITLITVGKVKEKHLRDAIDEYRKRLSRYCKLDIVEVQDEKTPDNAS-LKEELIIKNKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I + +VV LD G + SE++++ +G+ G G S I F IGG G + +
Sbjct: 60 AESILKYIKDNMYVVALDLKGKMLSSEELSDFVGNLGVNGESNIGFVIGGSLGLSKVVLD 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 120 RANYKLCFSKMTFPHQLMRVILLEQIYRGFRIMKGEPYH 158
>gi|423327957|ref|ZP_17305765.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CCUG 3837]
gi|404605622|gb|EKB05204.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CCUG 3837]
Length = 157
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVM 135
I+++ +GK S +Q ++DEY+ +L +Y K DL++ + KN ++ Q + E ++
Sbjct: 3 IKLLAIGKTDSKPLQTLMDEYMKRLSFYVKF-DLEVIPDIKNAKNMSEDQQKQKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ I D +++LD+ G + S A+ + ++G + F IGGPYG + + A
Sbjct: 62 SKIGPTDQLILLDDKGKEFTSIGFADELQKKMNSGIKTLVFVIGGPYGFSEDVYKNAKGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L ++EQ+YR +TIL+ + YHH
Sbjct: 122 ISLSRMTFSHQMIRLFIIEQIYRGFTILRNEPYHH 156
>gi|329121057|ref|ZP_08249688.1| hypothetical protein HMPREF9083_0149 [Dialister micraerophilus DSM
19965]
gi|327471219|gb|EGF16673.1| hypothetical protein HMPREF9083_0149 [Dialister micraerophilus DSM
19965]
Length = 158
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDVKAQI-KDEDMAV 134
I + +GK + ++ +DEY+ +LK + K+ ++ K + ++K Q+ + E + +
Sbjct: 3 ITISAIGKIKEKWMKEGIDEYLKRLKPFAKMNIIEHEEEKFSKKSEEIKKQVMEKESIKL 62
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + D ++LD +G ++ SE++A + +G SR F IGGP G+G +R+
Sbjct: 63 LKSLKYTDCCILLDTSGKEMSSEELASWFENKMISGKSRFHFFIGGPLGNGETIRKNIKF 122
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M L HQ+A L+LVEQ+YRS I+K + YH
Sbjct: 123 KLCLSKMTLTHQMARLILVEQIYRSIKIIKNEPYH 157
>gi|392960276|ref|ZP_10325746.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans DSM 17108]
gi|421054281|ref|ZP_15517250.1| Conserved hypothetical protein CHP00246 [Pelosinus fermentans B4]
gi|421057156|ref|ZP_15520040.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans B3]
gi|421066434|ref|ZP_15528042.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans A12]
gi|421070736|ref|ZP_15531865.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans A11]
gi|392440962|gb|EIW18616.1| Conserved hypothetical protein CHP00246 [Pelosinus fermentans B4]
gi|392447958|gb|EIW25173.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans A11]
gi|392455234|gb|EIW32032.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans DSM 17108]
gi|392455963|gb|EIW32729.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans A12]
gi|392463632|gb|EIW39537.1| Ribosomal RNA large subunit methyltransferase H [Pelosinus
fermentans B3]
Length = 159
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I VGK + + + + E++ +L YC+ V++ ++ +P + K +K E
Sbjct: 1 MKITIIAVGKIKEKYLTMGIAEFVKRLTPYCRLSIIEVDEERMPEHPSDAEKAKVLLK-E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + ++++LD G SE++AE + D G +G S I+F IGG +G P++ +
Sbjct: 60 GERILKYVKDSSYLIILDVIGKQASSEELAEKISDLGVSGKSDITFIIGGAFGLSPELLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 120 VANERLSFSKMTFTHQMIRLLLVEQIYRAFKINRGEPYH 158
>gi|218130643|ref|ZP_03459447.1| hypothetical protein BACEGG_02232 [Bacteroides eggerthii DSM 20697]
gi|217986987|gb|EEC53318.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides eggerthii DSM 20697]
Length = 194
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++YI + + Y E +++ KNT + +++ E ++
Sbjct: 42 LLVVGRTVEQHFITAINDYIQRTRRYLSFE-MEVIPELKNTKSLSFEVQKEKEGELILKA 100
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ E A+ +
Sbjct: 101 LQPGDVVVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYEAAHEKLS 160
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 161 LSRMTFSHQMIRLIFVEQLYRAMTILNGGPYHH 193
>gi|383453167|ref|YP_005367156.1| hypothetical protein COCOR_01150 [Corallococcus coralloides DSM
2259]
gi|380727897|gb|AFE03899.1| hypothetical protein COCOR_01150 [Corallococcus coralloides DSM
2259]
Length = 154
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQIKDEDM 132
+ +R++++GK RS + V EY +L++Y + E L+L G+ K+ E
Sbjct: 1 MKVRLLSIGKDRSGLFEPAVQEYARRLEHYTRFELLELNEASGRKLKPGEAKSA---EAA 57
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
A++ DW+V LDE G + S ++A + A TG+ + F IGG G +R A
Sbjct: 58 AILGKRKPQDWIVALDERGTLLDSVELARYVAKA-QTGSKDLLFVIGGDEGLDDSVRGAA 116
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 117 HQVMSLSRMTLPHRLARVVLIEQLYRAFTILKGEPYH 153
>gi|153954946|ref|YP_001395711.1| rRNA large subunit methyltransferase [Clostridium kluyveri DSM 555]
gi|219855391|ref|YP_002472513.1| hypothetical protein CKR_2048 [Clostridium kluyveri NBRC 12016]
gi|189039719|sp|A5MZP4.1|RLMH_CLOK5 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807113|sp|B9E3M4.1|RLMH_CLOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|146347804|gb|EDK34340.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569115|dbj|BAH07099.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 159
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++ V+EY +L YC++ ++Q P N + I + E
Sbjct: 1 MNITIIAVGKLKEKYLKAAVEEYSKRLSRYCRLNIIEVQDEKTPDNASSSEQDIIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ + +VV LD G +GSE+ ++ +G+ G +G S I+F IGG G ++ +R
Sbjct: 61 RRILKYINDNMYVVALDLKGSMMGSEEFSKFVGNLGLSGKSNIAFIIGGSLGISSEILKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRIMLLEQIYRGFRIMKGEPYH 158
>gi|403068922|ref|ZP_10910254.1| hypothetical protein ONdio_04919 [Oceanobacillus sp. Ndiop]
Length = 159
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I +++VGK + ++ + EY+ +L Y KV+ +++ P+N + + Q + E
Sbjct: 1 MRITIVSVGKLKEKYLKQGIQEYMKRLTAYAKVDIIEVADEKAPENMSEAEMQEVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D +V+ L+ NG + SEQ+A M + + G S+I+F IGG G +++R
Sbjct: 61 ERILSHIHPDTYVITLEINGKMLSSEQLAAKMDELATYGKSKIAFVIGGSLGISEAVQKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++++ S M HQ+ L+L+EQ+YR + I++G+ YH
Sbjct: 121 SDLALSFSKMTFPHQVMRLILLEQVYRGFRIIRGEPYH 158
>gi|345022681|ref|ZP_08786294.1| hypothetical protein OTW25_15396 [Ornithinibacillus scapharcae
TW25]
Length = 159
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIK-DED 131
+ I +I+VGK + ++ +DEY+ +LK Y KV+ +++ P+N + + ++K E
Sbjct: 1 MRISIISVGKLKEKYLKQGIDEYMKRLKAYAKVDIVEVPDEKAPENMSEAEMVEVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D +V+ L+ G + SE++A+ M + G S+I+F IGG G ++++R
Sbjct: 61 ERILSHIGQDTYVITLEIGGKMLSSEELADKMDQLATYGKSKIAFVIGGSLGISDEVQKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ LVL+EQ+YR + IL+G+ YH
Sbjct: 121 SDFALSFSRMTFPHQLMRLVLLEQVYRGFRILRGEPYH 158
>gi|310659832|ref|YP_003937553.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308826610|emb|CBH22648.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 159
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKA-QIKD-ED 131
+ I++I+VGK + ++L ++E+ +L YC +E +++ P+N D + IKD E
Sbjct: 1 MNIKIISVGKLKEKYLKLGIEEFTKRLSKYCSLEIIEVDDEKAPENLSDKEMIMIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ L +G + SE +AE + D TG S I+F IGG G + +R
Sbjct: 61 DKILSKIKDNTYVIALAIDGKMLSSEDLAEKLEDLAITGKSNIAFVIGGSLGLSDAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I+KG+ YH
Sbjct: 121 ADYKLSFSKMTFPHQMMKLILLEQVYRAYRIIKGEPYH 158
>gi|330998075|ref|ZP_08321903.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Paraprevotella xylaniphila YIT 11841]
gi|329569164|gb|EGG50955.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Paraprevotella xylaniphila YIT 11841]
Length = 157
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I ++ VGK ++EY ++++Y +E L N K+ + + + K+ D+
Sbjct: 1 MKITLLVVGKTNDPHFIAGIEEYAKRIRHYLPFGIEVLPELRNTKSLSEEQQKEKEADL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ D +V+LDE+G + S + A M + G R+ F +GGPYG P++ +AN
Sbjct: 60 LLKAFQPGDHIVLLDEHGQEHRSVEFAAWMEKRMAAGLKRMVFVVGGPYGFSPRIYAKAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L+ EQ+YR+ TI+ G+ YHH
Sbjct: 120 EKVSLSRMTFSHQMIRLIFTEQIYRAMTIINGEPYHH 156
>gi|313891714|ref|ZP_07825319.1| putative rRNA large subunit m3Psi methyltransferase RlmH [Dialister
microaerophilus UPII 345-E]
gi|313119708|gb|EFR42895.1| putative rRNA large subunit m3Psi methyltransferase RlmH [Dialister
microaerophilus UPII 345-E]
Length = 158
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 83 VGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDVKAQI-KDEDMAVMNIIS 139
+GK + ++ +DEY+ +LK + K+ ++ K + ++K Q+ + E + ++ +
Sbjct: 8 IGKIKEKWMKEGIDEYLKRLKPFAKMNIIEHEEEKFAKKSEEIKKQVMEKESIKLLKSLK 67
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
D ++LD +G ++ SE++A + +G SR F IGGP G+G +R+ + LS
Sbjct: 68 DTDCCILLDTSGKEMSSEELASWFENKMISGKSRFHFFIGGPLGNGETIRKNIKFKLCLS 127
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
M L HQ+A L+LVEQ+YRS I+K + YH
Sbjct: 128 KMTLTHQMARLILVEQIYRSIKIIKNEPYH 157
>gi|325856904|ref|ZP_08172402.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella denticola CRIS 18C-A]
gi|325483277|gb|EGC86254.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella denticola CRIS 18C-A]
Length = 156
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL---QLRSNPKNTGDVKAQIKDEDMAVMN 136
++ VGK ++ + +D+Y+ ++ +Y +L+ + D + Q + E ++
Sbjct: 5 LLLVGKTQNKIFRSGIDDYVSRIGHYMPFNVTTIPELKKTKSLSEDQQRQKEGE--LILK 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I + D VV+LDE G + S + AE + +T + R+ F IGGPYG P + RAN S+
Sbjct: 63 EIQTSDTVVLLDERGKEFRSVEFAEWLRRKQNT-SRRLLFLIGGPYGFSPDVYARANDSV 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 122 SLSRMTFSHQMVRLIFAEQLYRACTIIKGEPYHH 155
>gi|223982859|ref|ZP_03633080.1| hypothetical protein HOLDEFILI_00354 [Holdemania filiformis DSM
12042]
gi|223965181|gb|EEF69472.1| hypothetical protein HOLDEFILI_00354 [Holdemania filiformis DSM
12042]
Length = 158
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL------RSN-PKNTGDVKAQIKDE 130
IRVI VG+ + +Q + EY+ +L+ YCK E +++ +SN P VK + E
Sbjct: 2 IRVIAVGRIKEKPMQQCIQEYLKRLQPYCKTEIVEVDDIAAPQSNSPAQNEQVK---QKE 58
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + D+ VV+LD G SEQ+A+ + S S+I+F IGG G P++
Sbjct: 59 GERILAKLKKDETVVLLDLKGKSYSSEQLADQLQQIFSYQGSQIAFVIGGSLGVSPEVIA 118
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA++ K+S + HQ+ L+++EQ+YRS+ IL + YH
Sbjct: 119 RADLRWKMSDLTFPHQLCRLLVLEQIYRSFRILNHEPYH 157
>gi|333376786|ref|ZP_08468522.1| ribosomal RNA large subunit methyltransferase H [Dysgonomonas
mossii DSM 22836]
gi|332885999|gb|EGK06243.1| ribosomal RNA large subunit methyltransferase H [Dysgonomonas
mossii DSM 22836]
Length = 157
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I ++ +GK + ++EY +L++Y E +Q+ + KNT + + Q + E
Sbjct: 1 MKIILLAIGKTDAGYFVEAINEYQKRLEHYIPFE-IQIIPDIKNTKSLTMEQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D++V+LD+ G + S Q A + T + R+ F IGGPYG + ++AN
Sbjct: 60 ILKNIQPGDYLVLLDDKGKEYTSMQFATYIEKKTHTVSKRLIFAIGGPYGFSEAVYQKAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L+ VEQLYR+ TIL + YHH
Sbjct: 120 EKLTLSRMTFSHQMVRLIFVEQLYRAMTILNNEPYHH 156
>gi|293115585|ref|ZP_05792163.2| alpha/beta knot family protein [Butyrivibrio crossotus DSM 2876]
gi|292808933|gb|EFF68138.1| alpha/beta knot family protein [Butyrivibrio crossotus DSM 2876]
Length = 183
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 65 GSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD 122
G F+ Y + I++I VGK + + +DEY +L YCK+E +++ P +
Sbjct: 16 GDFLCYY--HIMKIKIICVGKIKEKFYTMAIDEYAKRLSRYCKLEIIEVADEKTPDGCSE 73
Query: 123 V-KAQIK-DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180
V +AQIK E + N I DD+V+ L NG + S A+ + G G S I++ IGG
Sbjct: 74 VVEAQIKAKEGERINNAIKEDDYVISLAINGTKLDSVAFADKIEKLGVNGVSSIAYIIGG 133
Query: 181 PYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
G + +R++ + S M HQ+ ++L EQ+YR + I+ G+ YH
Sbjct: 134 SLGLDNNILKRSDYKLSFSDMTFPHQLMRVILCEQIYRCYRIINGEPYH 182
>gi|306828599|ref|ZP_07461793.1| alpha/beta knot family protein [Streptococcus mitis ATCC 6249]
gi|304429207|gb|EFM32293.1| alpha/beta knot family protein [Streptococcus mitis ATCC 6249]
Length = 159
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDKASEIENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G P ++ R
Sbjct: 61 ARILSKVGERDFVLVLAIEGKTFSSEEFSKQLEEASIKGYSTLTFIIGGSLGLAPSVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|333980831|ref|YP_004518776.1| ribosomal RNA large subunit methyltransferase H [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333824312|gb|AEG16975.1| Ribosomal RNA large subunit methyltransferase H [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 159
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP----KNTGDVKAQIKDED 131
+ I ++ VGK + ++L EY+ +LK Y ++E +++R G V+A +K E
Sbjct: 1 MQITLLCVGKLKEDFLRLAQREYLKRLKPYARLEVMEVREEALPPTGEKGAVEAVLKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ LD G+ + SE+ A + D G SR+ F IGG G + R
Sbjct: 61 EQLLHRIPENSYVIALDREGVMLTSEEFAGFLHDLSLQGQSRLCFIIGGSAGLAGAVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 ASMRLSFSKFTFPHQLMRIILLEQVYRAFKIIRGERYH 158
>gi|406588443|ref|ZP_11063052.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD1S]
gi|419783083|ref|ZP_14308876.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK610]
gi|419814385|ref|ZP_14339176.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD2S]
gi|419818866|ref|ZP_14342748.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD4S]
gi|383182627|gb|EIC75180.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK610]
gi|404458478|gb|EKA04906.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD4S]
gi|404468061|gb|EKA13094.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD1S]
gi|404471895|gb|EKA16354.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD2S]
Length = 159
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFAKLEMIELTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE++++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGERDFVVVLAIEGKTLSSEELSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|432329762|ref|YP_007247905.1| rRNA large subunit m3Psi methyltransferase RlmH [Methanoregula
formicicum SMSP]
gi|432136471|gb|AGB01398.1| rRNA large subunit m3Psi methyltransferase RlmH [Methanoregula
formicicum SMSP]
Length = 159
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV----KAQIKDEDMA 133
IRVI+VG+ + +Q + EY +L+ Y K++ +++ + +A + E
Sbjct: 3 IRVISVGRIKERFLQDGILEYEKRLRPYAKIQIIEVPEEKRPVSATPPIERAAMAKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I +VV LD NG D S +AE + G ++I+F IGG G P + R+N
Sbjct: 63 IFAAIPEGSYVVALDVNGEDWSSTALAEALSRWELAGNNQIAFIIGGDLGLAPAVLSRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + LS M H IA L+L+EQ+YR++ IL+G+ YH
Sbjct: 123 LRLSLSHMTFTHPIARLLLIEQIYRAFRILRGEPYH 158
>gi|282877179|ref|ZP_06286017.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella buccalis ATCC 35310]
gi|281300671|gb|EFA93002.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella buccalis ATCC 35310]
Length = 156
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ +I VGK + +++Y+ ++ +Y + + N KN G V+ Q E
Sbjct: 1 MKTELIVVGKTDNPHFIAGIEDYVRRICHYVPFNIAVIPELKNNKNRG-VEQQKVQEGQL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + D VV+LDE+G + S ++A M + ++ F IGGPYG P++ RAN
Sbjct: 60 ILKKIEAADTVVLLDEHGKEFRSIELAAWM-EKKQQSVRKLVFVIGGPYGFSPEVYGRAN 118
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS + +HQ+ L+ VEQLYR+ TILKG+ YHH
Sbjct: 119 EKISLSKLTFSHQMVRLIFVEQLYRACTILKGEPYHH 155
>gi|323140446|ref|ZP_08075374.1| rRNA large subunit m3Psi methyltransferase RlmH
[Phascolarctobacterium succinatutens YIT 12067]
gi|322415014|gb|EFY05805.1| rRNA large subunit m3Psi methyltransferase RlmH
[Phascolarctobacterium succinatutens YIT 12067]
Length = 159
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I + VGK + + ++E+ +L +CK+E L + P N + Q ++ E
Sbjct: 1 MKITIACVGKIKEKYLTAGIEEFSKRLTPFCKLETLAINEERMPDNPSPAEKQQVLERET 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ II ++ +V++LD G + S +A + + G S I+F IGG +G+ +R+R
Sbjct: 61 QRLLAIIPANSYVILLDVIGKQLSSPDLAAKLDELALAGNSHITFVIGGAFGYTDALRKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 121 ADLVLSFSKMTFTHQMIRLLLIEQIYRAFKISRGEKYH 158
>gi|294501961|ref|YP_003565661.1| hypothetical protein BMQ_5250 [Bacillus megaterium QM B1551]
gi|294351898|gb|ADE72227.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 159
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +IT+GK + ++ + EY+ +L Y KVE ++L P+N + + Q+K E
Sbjct: 1 MNISIITIGKLKEKYLKQGIQEYLKRLSSYAKVEIIELADEKAPENLSESEMEQVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ ++ IS D V+ L NG SE++A+ + + G S+I+F IGG G ++ +R
Sbjct: 61 VRILAKISDDTHVIALAINGKQKSSEELAKEIDSLATYGKSKIAFVIGGSLGLSSEVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ LVLVEQ+YR++ I++ + YH
Sbjct: 121 SNAALSFSKMTFPHQLMRLVLVEQIYRAFRIIRNEPYH 158
>gi|421488174|ref|ZP_15935567.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK304]
gi|400368920|gb|EJP21926.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK304]
Length = 159
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKERYLKDGIAEYTKRISRFAKLEMIELTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGERDFVVVLAIEGKTLSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|307565792|ref|ZP_07628257.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella amnii CRIS 21A-A]
gi|307345503|gb|EFN90875.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella amnii CRIS 21A-A]
Length = 156
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD--VKAQIKDEDMAVMNI 137
+I VGK + Q +D+Y ++ +Y + + KNT + + Q K E ++
Sbjct: 5 LIVVGKTVNKIFQTGIDDYTNRIGHYMPFSIITI-PELKNTKNLTIDLQKKKEGELILKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D +++LDE G + S + A+ + S + R+ F IGG YG ++ ERAN I
Sbjct: 64 IQPTDTIILLDEKGKEFRSTEYAKWLKQKQSI-SRRLIFIIGGSYGFSKEIYERANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TILKG+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFVEQLYRACTILKGEPYHH 155
>gi|384044207|ref|YP_005492224.1| ribosomal RNA large subunit methyltransferase H [Bacillus
megaterium WSH-002]
gi|345441898|gb|AEN86915.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
megaterium WSH-002]
Length = 159
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +IT+GK + ++ ++EY+ +L Y KVE ++L P+N + + Q+K E
Sbjct: 1 MNISIITIGKLKEKYLKQGIEEYLKRLSSYAKVEIIELADEKAPENLSESEMEQVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D V+ L NG SE++A+ + + G S+I+F IGG G ++ +R
Sbjct: 61 ERILAKISDDTHVIALAINGKQKSSEELAKEIDSLATYGKSKIAFVIGGSLGLSSEVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ LVLVEQ+YR++ I++ + YH
Sbjct: 121 SNAALSFSKMTFPHQLMRLVLVEQIYRAFRIIRNEPYH 158
>gi|327314551|ref|YP_004329988.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella denticola F0289]
gi|326944390|gb|AEA20275.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella denticola F0289]
Length = 156
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
++ VGK ++ + +D+Y+ ++ +Y V + N K+ + + + K+ ++ ++
Sbjct: 5 LLLVGKTQNKIFRSGIDDYVSRIGHYMPFNVTTIPELKNTKSLSEDQQRQKEGEL-ILKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I + D VV+LDE G + S + AE + + + R+ F IGGPYG P + RAN S+
Sbjct: 64 IQTSDTVVLLDERGKEFRSVEFAEWLRRKQNI-SRRLLFLIGGPYGFSPDVYARANDSVS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSHMTFSHQMVRLIFAEQLYRACTIIKGEPYHH 155
>gi|333372814|ref|ZP_08464736.1| alpha/beta knot family protein [Desmospora sp. 8437]
gi|332971403|gb|EGK10361.1| alpha/beta knot family protein [Desmospora sp. 8437]
Length = 159
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR----SNPKNTGDVKAQIKDED 131
+ I+++ VGK + +++ V++Y+ +L Y KVE ++ + P +++ E
Sbjct: 1 MKIQILAVGKLKESYLRMGVEDYLQRLSPYAKVEVKEIAEEKATEPLTEAEIRRVTDREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ ++ D + + L G+ + SE +A + + G SRI+F IGG G ++R+R
Sbjct: 61 ERILRHLTPDTYTISLVIQGVALSSETLANHLDQLATYGKSRIAFIIGGSNGLSEQVRQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S+ S M HQ+ L+L+EQLYRS+ I +G+ YH
Sbjct: 121 ADYSLSFSKMTFPHQLMRLILLEQLYRSFKINRGETYH 158
>gi|381210695|ref|ZP_09917766.1| hypothetical protein LGrbi_12273 [Lentibacillus sp. Grbi]
Length = 159
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQ--IKDED 131
+ I +I VGK + ++ +DEY+ +L Y KV+ ++ P+N D Q + E
Sbjct: 1 MNISIIAVGKLKEKYLKQGIDEYLKRLGPYAKVQIKEVADEKAPENMSDADMQEVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS D +V+ LD NG + SE+ A + + G S+I+F IGG G ++++R
Sbjct: 61 ERILSHISQDTYVITLDINGKMLTSEKFAAELDKLATYGKSKIAFVIGGSVGISEEVQKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++++ S + HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SDLALSFSKLTFPHQMMRMILLEQVYRAFRIMRGEPYH 158
>gi|373461167|ref|ZP_09552913.1| rRNA large subunit m3Psi methyltransferase RlmH [Prevotella
maculosa OT 289]
gi|371953497|gb|EHO71321.1| rRNA large subunit m3Psi methyltransferase RlmH [Prevotella
maculosa OT 289]
Length = 156
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMN 136
R+I +GK + +D+Y ++ +Y D+ + KNT + + Q E V+
Sbjct: 4 RLILIGKTTDKHLLAGIDDYHRRITHYMPF-DITVVPELKNTKSLSEEQQKVSEGHLVLR 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
++ D +V+LDE+G S A + T A R+ F IGGPYG P + RAN +
Sbjct: 63 LLHPTDTLVLLDEHGPQHTSTAFARWLQQKQQT-ARRLVFLIGGPYGFSPDIYARANERL 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 122 SLSPMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|319901818|ref|YP_004161546.1| hypothetical protein Bache_1983 [Bacteroides helcogenes P 36-108]
gi|319416849|gb|ADV43960.1| protein of unknown function DUF163 [Bacteroides helcogenes P
36-108]
Length = 169
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 73 KRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM 132
+ ++ ++ VG+ +++Y+ + K Y E +++ KNT + +++ E
Sbjct: 10 RTSMKTTLLVVGRTVEQHFITAINDYVQRTKRYLSFE-MEIIPELKNTKSLSMEVQKEKE 68
Query: 133 A--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + D +V+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ +
Sbjct: 69 GELILKALQPGDVIVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYD 128
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ I LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 129 ATHEKISLSRMTFSHQMVRLIFVEQLYRAMTILTGGPYHH 168
>gi|331267343|ref|YP_004326973.1| SPOUT methyltransferase superfamily protein [Streptococcus oralis
Uo5]
gi|406577963|ref|ZP_11053534.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD6S]
gi|419780872|ref|ZP_14306710.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK100]
gi|326684015|emb|CBZ01633.1| SPOUT methyltransferase superfamily protein [Streptococcus oralis
Uo5]
gi|383184823|gb|EIC77331.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK100]
gi|404458881|gb|EKA05273.1| rRNA large subunit methyltransferase [Streptococcus sp. GMD6S]
Length = 159
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFAKLEMIELTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGERDFVVVLAIEGKTLSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|400291160|ref|ZP_10793187.1| rRNA large subunit methyltransferase [Streptococcus ratti FA-1 =
DSM 20564]
gi|399921951|gb|EJN94768.1| rRNA large subunit methyltransferase [Streptococcus ratti FA-1 =
DSM 20564]
Length = 159
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ +R+ITVGK + ++ + EY +L + K E ++L P N + QI D E
Sbjct: 1 MKVRLITVGKLKEKYLKDGIAEYSKRLSRFTKFEMIELPDEKTPDNASQTQNEQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS+ D+ ++L G I SE+ ++++ DA G S I+F IGG G K+++R
Sbjct: 61 QRIISKISNRDFAIVLAIEGRQISSEKFSQILSDAKLKGYSNITFIIGGSLGLSQKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + M L HQ+ LVL EQ+YRS+ I +G YH
Sbjct: 121 ADLLLSFGLMTLPHQLMRLVLTEQIYRSFMIQEGSPYH 158
>gi|423135292|ref|ZP_17122938.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CIP 101113]
gi|371642523|gb|EHO08083.1| ribosomal RNA large subunit methyltransferase H [Myroides
odoratimimus CIP 101113]
Length = 157
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVM 135
I+++ +GK S +Q ++DEY+ +L +Y K DL++ + KN ++ Q + E ++
Sbjct: 3 IKLLAIGKTDSKPLQTLMDEYMKRLSFYVKF-DLEVIPDIKNAKNMSEDQQKQKEGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ I D +++LD+ G + S A+ + ++G + F IGGPYG + + A
Sbjct: 62 SKIGPTDQLILLDDKGKEFTSIGFADELQKKMNSGIKTLVFVIGGPYGFSEGVYKNAKGK 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L ++EQ YR +TIL+ + YHH
Sbjct: 122 ISLSRMTFSHQMIRLFIIEQTYRGFTILRNEPYHH 156
>gi|373500968|ref|ZP_09591338.1| hypothetical protein HMPREF9140_01456 [Prevotella micans F0438]
gi|371951005|gb|EHO68854.1| hypothetical protein HMPREF9140_01456 [Prevotella micans F0438]
Length = 173
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV---KAQIKDEDMAVMN 136
++ VGK S + +++Y ++ +Y + + PK+T ++ + ++++ ++ ++
Sbjct: 22 LLMVGKTHSRMFESAINDYAKRIAHYMPFSTIVV-PEPKDTKNLSENQQKVREAEL-ILK 79
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ D VV+LDE+G S + A + T A R+ F IGGPYG + ERA I
Sbjct: 80 ELQPQDVVVLLDEHGRQFRSTEYATWLISKQQT-ARRLVFIIGGPYGFSTSIYERATEKI 138
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TI+KG+ YHH
Sbjct: 139 SLSRMTFSHQMVRLIFVEQLYRACTIIKGEPYHH 172
>gi|371777234|ref|ZP_09483556.1| rRNA large subunit methyltransferase [Anaerophaga sp. HS1]
Length = 157
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ--IKDEDMA 133
+ I++I VG+ +Q +Y G+LK+Y E +++ + K G + + + E
Sbjct: 1 MKIQLIMVGRTTEKWLQEGTGQYFGRLKHYLPFE-VKILTGVKKGGKLTPEELKQKEGND 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + D +V+LDENG S + A + TG R+ F IGG +G ++ RA+
Sbjct: 60 ILKNIDTSDCLVLLDENGKKFSSREFAGFLEKQMITGMRRLVFVIGGAWGFSDEVYGRAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQI L+ EQLYR+ TIL + YHH
Sbjct: 120 FKISLSPMTFSHQIVRLIFAEQLYRALTILNHEPYHH 156
>gi|414157563|ref|ZP_11413860.1| ribosomal RNA large subunit methyltransferase H [Streptococcus sp.
F0441]
gi|410871999|gb|EKS19944.1| ribosomal RNA large subunit methyltransferase H [Streptococcus sp.
F0441]
Length = 159
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDKASEIENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D+V++L G SE+ ++ + +A G S ++F IGG G P ++ R
Sbjct: 61 ARILSKIGERDFVLVLAIEGKTFSSEEFSKQLEEASIKGYSTLTFIIGGSLGLAPGVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVL+EQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLIEQIYRAFTIQQGSPYH 158
>gi|423297405|ref|ZP_17275466.1| ribosomal RNA large subunit methyltransferase H [Bacteroides ovatus
CL03T12C18]
gi|392667046|gb|EIY60557.1| ribosomal RNA large subunit methyltransferase H [Bacteroides ovatus
CL03T12C18]
Length = 166
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 71 NCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE 130
NC+R + ++ VG+ +++YI + K D+++ KNT + +++ E
Sbjct: 6 NCRR-MKTTLLVVGRTVEQHYITAINDYIQRTKRSITF-DMEVIPELKNTKSLSMEVQKE 63
Query: 131 DMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ + D VV+LDE+G ++ S + AE M +T R+ F IGGPYG K+
Sbjct: 64 KEGELILKALQPGDVVVLLDEHGKEMRSLEFAEYMKRKMNTVNKRLVFVIGGPYGFSEKV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ A+ I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 YQAAHEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|358062383|ref|ZP_09149029.1| ribosomal RNA large subunit methyltransferase H [Clostridium
hathewayi WAL-18680]
gi|356699512|gb|EHI61026.1| ribosomal RNA large subunit methyltransferase H [Clostridium
hathewayi WAL-18680]
Length = 159
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I VI VGK + + + EY +L YCK+E LQ+ P N + V+ QIK+ E
Sbjct: 1 MKITVIAVGKIKEKFFEDAIGEYSKRLSRYCKLEILQVPDEKTPDNASETVETQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +V+ L G + SE++AE + G TG S+I F IGG G ++ ER
Sbjct: 61 ERILSKIPEGAYVIALAIEGKMLDSEELAEKINTLGITGTSQIVFIIGGSLGLSGQVLER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ +VL+EQ+YR + I+ G YH
Sbjct: 121 ADYKLSFSRMTFPHQLMRVVLLEQVYRGYRIIMGAPYH 158
>gi|164686474|ref|ZP_02210502.1| hypothetical protein CLOBAR_00039 [Clostridium bartlettii DSM
16795]
gi|164604485|gb|EDQ97950.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
bartlettii DSM 16795]
Length = 159
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKA-QIKD-ED 131
+ I ++ VGK + ++L +DE+ +L YCK+E ++L P+N D + IK+ E
Sbjct: 1 MRINIVCVGKIKEKYLKLGIDEFKKRLSKYCKLEIIELEDEKAPENLSDKEMLMIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ L +G ++ SE++AE + G G S I+F IGG G ++ R
Sbjct: 61 KKILSKIKDNSYVIALAIDGKNLSSEELAETINKLGVRGISNITFVIGGSLGLSDEVLSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I G+ YH
Sbjct: 121 ADYKLSFSKMTFPHQLMRLILLEQVYRAYRINNGEPYH 158
>gi|300727695|ref|ZP_07061081.1| conserved hypothetical protein [Prevotella bryantii B14]
gi|299774983|gb|EFI71589.1| conserved hypothetical protein [Prevotella bryantii B14]
Length = 156
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+I VGK + +++Y ++ +Y +E + N KN + + + + D+ +M
Sbjct: 5 LILVGKTVNKHFVAGINDYTERIGHYMPFIIETIPELKNTKNLSEDQQKEMEGDL-IMKQ 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S + A+ + +T A R+ F IGGPYG K+ +R N I
Sbjct: 64 IQPSDTVVLLDEHGAEYRSIEYAKWLQKKQNT-ARRLVFVIGGPYGFAQKIYDRCNEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TI+KG+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFVEQLYRACTIIKGEPYHH 155
>gi|298484371|ref|ZP_07002531.1| SPOUT methyltransferase superfamily protein [Bacteroides sp. D22]
gi|295087940|emb|CBK69463.1| Uncharacterized conserved protein [Bacteroides xylanisolvens XB1A]
gi|298269482|gb|EFI11083.1| SPOUT methyltransferase superfamily protein [Bacteroides sp. D22]
Length = 157
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K Y D+++ KNT + +++ E ++ + D VV+LDE+G
Sbjct: 20 INDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKEKEGELILKALQPGDIVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + AE M +T R+ F IGGPYG K+ + A+ I +S M +HQ+ L+
Sbjct: 79 EMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKVYQAAHEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|373494077|ref|ZP_09584683.1| hypothetical protein HMPREF0380_00321 [Eubacterium infirmum F0142]
gi|371969211|gb|EHO86662.1| hypothetical protein HMPREF0380_00321 [Eubacterium infirmum F0142]
Length = 158
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQI--KDEDM 132
+ IRVI +GK + + V EYI +LK YC + ++L+ + ++ G+ I + E
Sbjct: 1 MNIRVICIGKLKEAYWRDAVAEYIKRLKGYCNPQIIELKESKQSGEGEAAEHIVREREGE 60
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ I+ + +V+ L+ G + SEQ+AE + + G S ++F IGG G + +RA
Sbjct: 61 EILSRITQNMYVITLEIKGKKLSSEQLAEKIEELSIEGKSDVAFVIGGSLGLSKAVSKRA 120
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N+ + S M HQ+ +L+EQ+YRS+ I +G+ YH
Sbjct: 121 NMKLSFSDMTFPHQMMRTILLEQIYRSFKIARGEKYH 157
>gi|163788019|ref|ZP_02182465.1| hypothetical protein FBALC1_06558 [Flavobacteriales bacterium
ALC-1]
gi|159876339|gb|EDP70397.1| hypothetical protein FBALC1_06558 [Flavobacteriales bacterium
ALC-1]
Length = 158
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPI-RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDM 132
+P+ ++I +GK + +Q ++++Y +L +Y + E L++ + K + +AQ KD E
Sbjct: 1 MPVFKLIAIGKTDNKNLQTLIEDYKKRLGHYIRFE-LEIIPDLKKVKHLSEAQQKDKEGE 59
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ + D +V+LDENG + S + + ++G + F IGGPYG + +RA
Sbjct: 60 LILAKTQNSDILVLLDENGKQLDSIAFSNYLQKHMNSGIKTLIFVIGGPYGFSDAVYKRA 119
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
N + LS M +HQ+ L +EQLYR +TILK + YHH
Sbjct: 120 NGKLGLSQMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 157
>gi|110639170|ref|YP_679379.1| rRNA large subunit methyltransferase [Cytophaga hutchinsonii ATCC
33406]
gi|118574629|sp|Q11RC7.1|RLMH_CYTH3 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|110281851|gb|ABG60037.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 155
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQIKDEDM 132
+ +++ T+GK ++ +Y +L +Y E L++ PKNT DV K+E+
Sbjct: 1 MKLQLWTIGKTNDAYLKEGCAQYTKRLPHYLPFEYLEI-PEPKNTKLSSDVLK--KEEEK 57
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + + D +++LDE G + S + + + ++ A + F IGGPYG + +RA
Sbjct: 58 LIFDRLQDSDQLILLDEKGNEFTSTEFGQYIQKKMNSVAGNLIFLIGGPYGFSDAVYKRA 117
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
N I LS M +HQ+ L +EQLYR+ TI+KG+ YHH
Sbjct: 118 NGKIALSKMTFSHQMVRLFALEQLYRACTIIKGEKYHH 155
>gi|322515795|ref|ZP_08068740.1| alpha/beta knot family protein [Streptococcus vestibularis ATCC
49124]
gi|322125757|gb|EFX97075.1| alpha/beta knot family protein [Streptococcus vestibularis ATCC
49124]
Length = 165
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN A+ +++ITVGK + ++ + EYI +L + K E ++L P N +
Sbjct: 1 MCYN--EAMKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELIDEKTPDNASEAEN 58
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 59 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLG 118
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
PK+++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 119 LSPKVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIRQGSPYH 164
>gi|387131898|ref|YP_006297871.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella intermedia 17]
gi|386374746|gb|AFJ07590.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella intermedia 17]
Length = 156
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMAVMNI 137
+I VGK + +Y G++ +Y + L KNT + +AQ KD E ++
Sbjct: 5 LILVGKTTEDVFVRAIADYTGRIAHYLPFNIVTL-PELKNTKKLSEAQQKDREGEMILKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S + A + +T A R+ F IGGPYG + +RAN I
Sbjct: 64 IQMSDTVVLLDEHGKEFRSVEYAAWLQKKQNT-AKRLVFVIGGPYGFSKAVYDRANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ +I+KG+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFVEQLYRACSIIKGEPYHH 155
>gi|260592473|ref|ZP_05857931.1| alpha/beta knot family protein [Prevotella veroralis F0319]
gi|260535519|gb|EEX18136.1| alpha/beta knot family protein [Prevotella veroralis F0319]
Length = 156
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 8/155 (5%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDV--KAQIKDEDMAVM 135
++ VGK ++ + +D+Y ++K+Y + + P KNT ++ + Q + E ++
Sbjct: 5 LLLVGKTQNKIFREGIDDYTNRIKHYMP---FSITAIPELKNTKNITEEQQKQREGELIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I D VV+LDE+G + S + A+ + +T A R+ F IGGPYG + RAN
Sbjct: 62 REIQPADTVVLLDEHGSEFTSLKYADWLTQKQNT-ARRLVFVIGGPYGFSQDVYARANEK 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 121 ISLSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|237723134|ref|ZP_04553615.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|255693850|ref|ZP_05417525.1| SPOUT methyltransferase family protein [Bacteroides finegoldii DSM
17565]
gi|262409099|ref|ZP_06085644.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645234|ref|ZP_06722951.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides ovatus SD CC 2a]
gi|294809857|ref|ZP_06768536.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides xylanisolvens SD CC 1b]
gi|229447656|gb|EEO53447.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260620335|gb|EEX43206.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides finegoldii DSM 17565]
gi|262353310|gb|EEZ02405.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639412|gb|EFF57713.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides ovatus SD CC 2a]
gi|294442943|gb|EFG11731.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides xylanisolvens SD CC 1b]
Length = 157
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K Y D+++ KNT + +++ E ++ + D VV+LDE+G
Sbjct: 20 INDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKEKEGELILKALQPGDVVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + AE M +T R+ F IGGPYG K+ + A+ I +S M +HQ+ L+
Sbjct: 79 EMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKVYQAAHEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|423219345|ref|ZP_17205841.1| ribosomal RNA large subunit methyltransferase H [Bacteroides caccae
CL03T12C61]
gi|392626111|gb|EIY20167.1| ribosomal RNA large subunit methyltransferase H [Bacteroides caccae
CL03T12C61]
Length = 166
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI 127
I+ N +R I ++ VG+ +++YI + K Y D+++ KNT + ++
Sbjct: 3 INQNNRRMKTI-LLVVGRTVEQHYITAINDYIQRTKRYITF-DMEVIPELKNTKSLSMEV 60
Query: 128 KDEDMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG 185
+ E ++ + D +V+LDE+G ++ S + A+ M +T R+ F IGGPYG
Sbjct: 61 QKEKEGELILKSLQPGDVIVLLDEHGKEMRSLEFADYMKRKMNTVNKRLVFIIGGPYGFS 120
Query: 186 PKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
K+ + AN I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 121 EKVYQAANEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|383113566|ref|ZP_09934338.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
D2]
gi|423289472|ref|ZP_17268322.1| ribosomal RNA large subunit methyltransferase H [Bacteroides ovatus
CL02T12C04]
gi|382948780|gb|EFS32563.2| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
D2]
gi|392667183|gb|EIY60693.1| ribosomal RNA large subunit methyltransferase H [Bacteroides ovatus
CL02T12C04]
Length = 166
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 71 NCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDE 130
NC+R + ++ VG+ +++YI + K D+++ KNT + +++ E
Sbjct: 6 NCRR-MKTTLLVVGRTVEQHYITAINDYIQRTKRSITF-DMEVIPELKNTKSLSMEVQKE 63
Query: 131 DMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ + D VV+LDE+G ++ S + AE M +T R+ F IGGPYG K+
Sbjct: 64 KEGELILKALQPGDVVVLLDEHGKEMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ A+ I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 YQAAHEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|299146791|ref|ZP_07039859.1| putative SPOUT methyltransferase superfamily [Bacteroides sp.
3_1_23]
gi|298517282|gb|EFI41163.1| putative SPOUT methyltransferase superfamily [Bacteroides sp.
3_1_23]
Length = 157
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K Y D+++ KNT + +++ E ++ + D VV+LDE+G
Sbjct: 20 INDYIQRTKRYFTF-DMEVIPELKNTKSLSMEVQKEKEGELILKALQPGDVVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + AE M +T R+ F IGGPYG K+ + A+ I +S M +HQ+ L+
Sbjct: 79 EMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKVYQAAHEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|152977658|ref|YP_001377175.1| rRNA large subunit methyltransferase [Bacillus cytotoxicus NVH
391-98]
gi|189040265|sp|A7GVM2.1|RLMH_BACCN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|152026410|gb|ABS24180.1| protein of unknown function DUF163 [Bacillus cytotoxicus NVH
391-98]
Length = 159
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SEQ AE + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEQFAESLDCLATYGKSKIAFVIGGSLGLSTEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQIYRAFRINRGEPYH 158
>gi|322375213|ref|ZP_08049727.1| putative SPOUT methyltransferase superfamily [Streptococcus sp.
C300]
gi|321280713|gb|EFX57752.1| putative SPOUT methyltransferase superfamily [Streptococcus sp.
C300]
Length = 159
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFTKLEMIELTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGGRDFVVVLAIEGKTLSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|408357722|ref|YP_006846253.1| ribosomal RNA large subunit methyltransferase H [Amphibacillus
xylanus NBRC 15112]
gi|407728493|dbj|BAM48491.1| ribosomal RNA large subunit methyltransferase H [Amphibacillus
xylanus NBRC 15112]
Length = 159
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-EDMA 133
I +I+VGK + ++L +DEY +LK Y ++ +++ P+ + + Q +KD E
Sbjct: 3 ITIISVGKLKEKYLKLGIDEYAKRLKSYANLKLVEVADEKAPETLSEAEMQAVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +D +V+ L+ G + SEQ+A + + + G S+I+F IGG G + +R++
Sbjct: 63 ILAKIPADTYVITLEIEGKQLSSEQLASQLDELATHGKSKIAFVIGGSLGLSEAVMKRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 YALSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|291515939|emb|CBK65149.1| Uncharacterized conserved protein [Alistipes shahii WAL 8301]
Length = 157
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD--VKAQIKDEDMA 133
+ I +I +GK S + +V+ Y ++ +YC+ L + +NT V+ Q E A
Sbjct: 1 MTIELIVIGKTDSKEIAALVELYARRVNHYCRFAVTAL-PDVRNTKSMTVRQQRTAEGEA 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D+V +LDE G + S + A + ++G R+ IGGPYG ++ RA+
Sbjct: 60 ILRQLTDGDYVTLLDERGEEYRSVEFALWLQKRLNSGVKRLVLVIGGPYGFSDEVYARAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQI + EQ+YR++TIL + YHH
Sbjct: 120 GRLSLSRMTFSHQIVRAIFAEQIYRAFTILNNEPYHH 156
>gi|365122480|ref|ZP_09339382.1| ribosomal RNA large subunit methyltransferase H [Tannerella sp.
6_1_58FAA_CT1]
gi|363642482|gb|EHL81834.1| ribosomal RNA large subunit methyltransferase H [Tannerella sp.
6_1_58FAA_CT1]
Length = 157
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ I ++ VGK + EY +L++Y D+++ + KN ++ + E A
Sbjct: 1 MKILLLVVGKTTESYFSEAIKEYSERLRHYISF-DMEVIPDLKNMKNLSFDQQKEKEADQ 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + S D++V+LDE G + S Q A + R+ F +GGPYG ++ + AN
Sbjct: 60 IFKFLQSGDYLVLLDERGKEYSSVQFAAYIERKTHVVPKRLVFIVGGPYGFSSRVYKAAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ ++ VEQLYR+ TIL + YHH
Sbjct: 120 EKISLSKMTFSHQMIRMIFVEQLYRAMTILNNEPYHH 156
>gi|295707312|ref|YP_003600387.1| hypothetical protein BMD_5238 [Bacillus megaterium DSM 319]
gi|294804971|gb|ADF42037.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
Length = 159
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +IT+GK + ++ + EY+ +L Y KVE ++L P+N + + Q+K E
Sbjct: 1 MNISIITIGKLKEKYLKQGIQEYLKRLSSYAKVEIIELADEKAPENLSESEMEQVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D V+ L NG SE++A+ + + G S+I+F IGG G ++ +R
Sbjct: 61 ERILAKISDDTHVIALAINGKQKSSEELAKEIDSLATYGKSKIAFVIGGSLGLSSEVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ LVLVEQ+YR++ I++ + YH
Sbjct: 121 SNAALSFSKMTFPHQLMRLVLVEQIYRAFRIIRNEPYH 158
>gi|88603833|ref|YP_504011.1| hypothetical protein Mhun_2595 [Methanospirillum hungatei JF-1]
gi|118574616|sp|Q2FTV8.1|RLMH_METHJ RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|88189295|gb|ABD42292.1| protein of unknown function DUF163 [Methanospirillum hungatei JF-1]
Length = 159
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKDEDMAV 134
IR+ +GK + ++ + +Y ++ +C+VE ++ P + ++ E +
Sbjct: 4 IRIRAIGKIKESFIRDAIADYAKRMCSFCQVECIEYPEAPVPDTHPSTIEMACVSEGEKL 63
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I S D+V++LD G + SE +AE++ G ++ F IGGP+G ++ NI
Sbjct: 64 CSGIDSLDYVIILDRTGKQVSSEGLAEVIRRCEIEGPYQLVFIIGGPHGLSKDCLQKGNI 123
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS+M HQIA L+L EQLYR++TI++G YH
Sbjct: 124 ILSLSAMTFPHQIARLLLYEQLYRAFTIIRGLPYH 158
>gi|306826184|ref|ZP_07459519.1| alpha/beta knot family protein [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|417794542|ref|ZP_12441792.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK255]
gi|304431660|gb|EFM34641.1| alpha/beta knot family protein [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|334269065|gb|EGL87495.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK255]
Length = 159
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYTKRISRFAKLEMIELTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G SE ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ARILSKVRERDFVVVLAIEGKTFSSEDFSKQLEQASIKGYSTLTFIIGGSLGLAPIVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|331091085|ref|ZP_08339927.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405307|gb|EGG84843.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 159
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKDEDM 132
+ I VITVGK + ++ + EY +L YCK+E +++ ++ +G V+ QI+ ++
Sbjct: 1 MKITVITVGKLKEKYLKDAIAEYAKRLSKYCKLEIIEVADEKTPDTASGIVEDQIRSKEA 60
Query: 133 A-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M + D V+ L+ G + SE+ A+ + G G S I+F IGG G G ++ +R
Sbjct: 61 ERIMKYVKEDAHVITLEIAGKQLTSEEFADKIEKLGVQGTSHITFIIGGSIGLGKEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 121 SDYALSFSKMTFPHQLMRVILLEQIYRGYRIINGEPYH 158
>gi|160886298|ref|ZP_02067301.1| hypothetical protein BACOVA_04305 [Bacteroides ovatus ATCC 8483]
gi|156108183|gb|EDO09928.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides ovatus ATCC 8483]
Length = 157
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K Y D+++ KNT + +++ E ++ + D VV+LDE+G
Sbjct: 20 INDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKEKEGELILKALQPGDVVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + AE M +T R+ F IGGPYG K+ + A+ I +S M +HQ+ L+
Sbjct: 79 EMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKVYQVAHEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|317502744|ref|ZP_07960854.1| alpha/beta knot family protein [Prevotella salivae DSM 15606]
gi|315666137|gb|EFV05694.1| alpha/beta knot family protein [Prevotella salivae DSM 15606]
Length = 156
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
+I VGK + +++Y ++++Y D+ + KNT + + Q + E +++
Sbjct: 5 LILVGKTINKHFIAGINDYRERIEHYMPF-DITVIPELKNTKKLSNEQQKEREGELILSC 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE+G + S + AE + T A R+ F IGGPYG M +RAN +
Sbjct: 64 LKPADTVVLLDEHGKEFRSIEFAEWLQKEQHT-ARRLVFVIGGPYGFSAAMYQRANEKLS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|331268261|ref|YP_004394753.1| hypothetical protein CbC4_0073 [Clostridium botulinum BKT015925]
gi|329124811|gb|AEB74756.1| protein of unknown function DUF163 [Clostridium botulinum
BKT015925]
Length = 159
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++ +DEY +L YCK+ ++L P N + I + E
Sbjct: 1 MNITIICVGKLKEKYLKQAIDEYSKRLSRYCKLSIVELNDEKTPDNASEKDEIIIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
M +++ I + +V+ LD G + SE++A+L+ D G G S I+ IGG G ++ +R
Sbjct: 61 MRILSHIKDNMYVIALDIKGKMVSSEELADLVNDLGLRGNSNIALVIGGSLGLDKEVLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRVILLEQIYRAYRINSGEPYH 158
>gi|222053715|ref|YP_002536077.1| hypothetical protein Geob_0611 [Geobacter daltonii FRC-32]
gi|259491711|sp|B9M0D9.1|RLMH_GEOSF RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|221563004|gb|ACM18976.1| protein of unknown function DUF163 [Geobacter daltonii FRC-32]
Length = 153
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++V+ VGK + V+ +DEY G++ Y + DL + K V+A + E ++
Sbjct: 1 MRLKVLWVGKTQEEWVRRGIDEYAGRIGRYMSI-DLAEARDEKGAA-VEAMREREGERLL 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ + +V+LDE G + S ++A + G + F IGG YG +R +A +
Sbjct: 59 KLLPKNARLVLLDERGEQMSSPELARFLATNRDGGTQELVFVIGGAYGFSDSLRAKAFKT 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ + L+EQLYR +TI+ G+ YHH
Sbjct: 119 ISLSRMTFTHQMVRIFLLEQLYRGFTIINGEPYHH 153
>gi|169830168|ref|YP_001700326.1| hypothetical protein Bsph_4752 [Lysinibacillus sphaericus C3-41]
gi|238688170|sp|B1HPJ4.1|RLMH_LYSSC RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|168994656|gb|ACA42196.1| UPF0247 protein [Lysinibacillus sphaericus C3-41]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I +++VGK + +++ +DEY+ +L Y K++ +++ P+ D + +I K E
Sbjct: 1 MNITIVSVGKLKEKYLKMGIDEYVKRLGGYAKIDLIEVADEKAPEQLSDAEMEIVKKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS+D +V+ L NG SEQMA + + G S+I+F IGG G + +R
Sbjct: 61 ERILAKISTDTYVIALAINGKMKTSEQMAADLESLMTYGKSKIAFVIGGSLGLHEDVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ M L HQ+ LVLVEQ+YRS+ I+KG+ YH
Sbjct: 121 ADEQQSFGKMTLPHQLMKLVLVEQVYRSFRIMKGEPYH 158
>gi|424835829|ref|ZP_18260488.1| rRNA large subunit methyltransferase [Clostridium sporogenes PA
3679]
gi|365977699|gb|EHN13797.1| rRNA large subunit methyltransferase [Clostridium sporogenes PA
3679]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N + I + E
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDNASLKEEYIIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ LD G I SE+ + L+ + TG+S I+F IGG G ++ R
Sbjct: 61 NLILKHIKDNSFVIALDLKGKSITSEEFSNLIENCRLTGSSTITFVIGGSLGLSEQVLSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLFRVMLLEQIYRAFRILAGEPYH 158
>gi|228469914|ref|ZP_04054853.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228308549|gb|EEK17337.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK---NTGDVKAQIKDEDMAVMN 136
++ VG+ S + +++EY ++ Y DL++ +PK + Q + A+ +
Sbjct: 5 LLVVGETSSPELHRLIEEYRQRIGGYIPF-DLEVLPDPKRRKQQASIANQQQATCEAIAS 63
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER-ANIS 195
+I+ D VV+LDE G + S Q AE + ++GA R+ +GGPYG P+ ++R +
Sbjct: 64 VIAPSDLVVLLDERGKEYTSRQWAEQLQRYMNSGAKRLLLVVGGPYGFTPEFKQRYGQQA 123
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + L H++ L VEQ+YR+ TIL+G+ YHH
Sbjct: 124 WSLSRLTLTHEMVRLFAVEQIYRACTILRGEPYHH 158
>gi|365905867|ref|ZP_09443626.1| rRNA large subunit methyltransferase [Lactobacillus versmoldensis
KCTC 3814]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-ED 131
+ I+ +TVGK + ++ + EY +L +CK + ++ P+N + + Q +K+ E
Sbjct: 1 MNIKFVTVGKLKEKYLKAGIAEYAKRLGAFCKFQIIECPDEKAPENLSEAQDQHVKEVEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++V++LD G ++ SE++A+ + D + G S I+ IGG G P++++R
Sbjct: 61 ERILDKIKDKEYVILLDLKGKELTSEELAKKIDDLSTYGTSDITLVIGGSLGVSPEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ SI L HQ+ LVL EQ+YRS+ I+ + YH
Sbjct: 121 ADYSICFGKFTLPHQLMRLVLTEQIYRSFMIINHRTYH 158
>gi|385261836|ref|ZP_10039953.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
SK643]
gi|385192558|gb|EIF39963.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
SK643]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYTKRISRFSKLEMIELSDERTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G P +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTFSSEEFSQQLEEASIKGFSTLTFIIGGSLGLAPIVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|300854921|ref|YP_003779905.1| hypothetical protein CLJU_c17400 [Clostridium ljungdahlii DSM
13528]
gi|300435036|gb|ADK14803.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDM- 132
+ + +ITVGK + ++ V+EY +L YCK+ ++Q P+N A KDED+
Sbjct: 1 MNLTIITVGKLKEKYLKDAVEEYSKRLSRYCKINIVEVQDEKTPEN-----ASKKDEDII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
+ I+ +VV +D G + SEQ ++ +G+ G G S I+F IGG G
Sbjct: 56 REKEGARISKYINDSMYVVAMDLKGNTMTSEQFSDFIGNLGLQGRSNIAFIIGGSLGISR 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ +RA+ + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 116 EILQRADYKLCFSKMTFPHQLFRVMLLEQIYRGFKIMKGEPYH 158
>gi|336394288|ref|ZP_08575687.1| rRNA large subunit methyltransferase [Lactobacillus farciminis KCTC
3681]
Length = 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 92/160 (57%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVK----AQIKD 129
+ I+++TVGK + + + EY +L +CK + + Q P++ + + QI+
Sbjct: 1 MNIKMVTVGKLKEKYFKAGIAEYAKRLGAFCKFQIVECQDEKAPESLSEAQDLKVKQIEG 60
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +++ I ++V++LD G ++ SEQ+A+ + D + G S I+F IGG G P++
Sbjct: 61 E--RILSKIKDKEFVILLDLRGKELTSEQLAKKIDDLSTYGTSDITFVIGGSLGVSPEVV 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+RA++SI L HQ+ LVL EQ+YRS+ I+ + YH
Sbjct: 119 KRADMSICFGKFTLPHQLMRLVLTEQIYRSFMIINHRTYH 158
>gi|325285233|ref|YP_004261023.1| ribosomal RNA large subunit methyltransferase H [Cellulophaga
lytica DSM 7489]
gi|324320687|gb|ADY28152.1| Ribosomal RNA large subunit methyltransferase H [Cellulophaga
lytica DSM 7489]
Length = 157
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I+++ +GK + +Q ++ EY +L +Y K +L + + KN ++ +AQ K+ E
Sbjct: 1 MTIKLLAIGKTDNKNLQALIAEYEKRLGHYIKF-NLDIIPDIKNAKNLSEAQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +S+ D +++LDENG S ++ + + G ++ F IGGPYG + A
Sbjct: 60 ILKKLSTTDVLILLDENGKQFTSVDFSDYLQKKMNAGIKQLVFVIGGPYGFSDTIYATAK 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +VEQ+YR +TIL+ + YHH
Sbjct: 120 GKISLSKMTFSHQMVRLFVVEQIYRGFTILRNEPYHH 156
>gi|284049121|ref|YP_003399460.1| hypothetical protein Acfer_1791 [Acidaminococcus fermentans DSM
20731]
gi|283953342|gb|ADB48145.1| protein of unknown function DUF163 [Acidaminococcus fermentans DSM
20731]
Length = 160
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 8/159 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQI-KDED 131
I + GK + ++ E+ +L YC++E + ++ NP + VKAQ+ E
Sbjct: 4 ITLACAGKLKENYLREAEQEFTKRLGAYCQLEIRCINEEKMPDNP--SPAVKAQVLARET 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +I +VV+LD G +I S Q+AE M G S ++F IGGP+G+ +R+R
Sbjct: 62 DRILKLIPEHSFVVLLDLKGKEISSPQLAEKMEQWMVEGISHLTFVIGGPFGYTDALRKR 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A+ S + HQ+ ++L+EQ+YR++ I++ + YHH
Sbjct: 122 ADFRWSFSPLTFTHQMIRVLLLEQIYRAFKIMRKEKYHH 160
>gi|374374461|ref|ZP_09632120.1| Ribosomal RNA large subunit methyltransferase H [Niabella soli DSM
19437]
gi|373233903|gb|EHP53697.1| Ribosomal RNA large subunit methyltransferase H [Niabella soli DSM
19437]
Length = 157
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ I VGK V+ V E+ G++ Y K+E +L PK + K K E
Sbjct: 1 MKIAFWAVGKGHDEYVKEGVAEFSGRIVNYFKLE-WELIPVPKEAAHLAPKELKKKEAEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ +D++V LDE G + SE +A + + G RI F IGG +G +++RAN
Sbjct: 60 ILPKIAKEDYLVALDERGRQMTSEGLAGFLQSRANAGTRRIIFLIGGAFGLDESVQKRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS +V HQ+ L+L EQ+YR+ TI+K + YHH
Sbjct: 120 TTWSLSQLVFPHQLVRLILAEQVYRACTIMKNEKYHH 156
>gi|251778702|ref|ZP_04821622.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243083017|gb|EES48907.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 159
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI-KD-ED 131
+ I +I+VGK + ++ +DEY +L YCK+ +LQ P N + I KD E
Sbjct: 1 MNITIISVGKLKEKYLKHAIDEYSKRLSRYCKLNIVELQDEQTPDNASEKDELIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ LD G I SE++++ + + G G S + F IGG G + +R
Sbjct: 61 NKILNAIKDNMYVITLDLKGKMISSEELSKFIDNCGVRGNSNLCFIIGGSLGLSEAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N S+ S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 SNYSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158
>gi|291542279|emb|CBL15389.1| conserved hypothetical protein TIGR00246 [Ruminococcus bromii
L2-63]
Length = 161
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-----RSNPKNTGDVKAQIKDE 130
+ I +I +GK + + EY +L +CK ++L +SN N + I E
Sbjct: 2 IKINIICIGKIKEKYFTDAIAEYAKRLTAFCKFNIIELSEERIKSNIPNRSQIDEVIFSE 61
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+M IS D+VV + G + SE++++L+ +A +G S + F IGG YG +++
Sbjct: 62 GKRIMQKISPSDYVVAMCIEGKPMSSEELSKLIDNASVSGKSTVDFIIGGSYGLDESVKK 121
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA++ + +S M HQ+A ++L EQ+YR++ I YH
Sbjct: 122 RADVRLSMSRMTFPHQMARMILSEQIYRAFEISSNGKYH 160
>gi|153808603|ref|ZP_01961271.1| hypothetical protein BACCAC_02901 [Bacteroides caccae ATCC 43185]
gi|149128925|gb|EDM20142.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides caccae ATCC 43185]
Length = 157
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K Y D+++ KNT + +++ E ++ + D +V+LDE+G
Sbjct: 20 INDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKEKEGELILKSLQPGDVIVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + A+ M +T R+ F IGGPYG K+ + AN I +S M +HQ+ L+
Sbjct: 79 EMRSLEFADYMKRKMNTVNKRLVFIIGGPYGFSEKVYQAANEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|282879589|ref|ZP_06288320.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella timonensis CRIS 5C-B1]
gi|281306537|gb|EFA98566.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella timonensis CRIS 5C-B1]
Length = 156
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL---QLRSNPKNTGDVKAQIKDEDM 132
+ + ++ +GK + +++Y+ ++ +Y + +L++N K T + + E
Sbjct: 1 MKVELLLIGKTVNRHFVAGIEDYVSRINHYLPLTVTVIPELKNNKKMTESQQKTL--EGQ 58
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ I D +V+LDE+G ++ S ++A + ST +I F IGGPYG P++ ERA
Sbjct: 59 LILKKIMPSDTIVLLDEHGKELRSVELAAWLEKKQST-TRKIVFVIGGPYGFAPEVYERA 117
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ + LS + +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 118 DEQLSLSRLTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|416348072|ref|ZP_11680133.1| rRNA large subunit methyltransferase [Clostridium botulinum C str.
Stockholm]
gi|338197031|gb|EGO89206.1| rRNA large subunit methyltransferase [Clostridium botulinum C str.
Stockholm]
Length = 159
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++ +DEY +L YCK+ +QL P N + I + E
Sbjct: 1 MNITIICVGKLKEKYLKQAIDEYSKRLSRYCKLNIVQLNDEKTPDNASEKDELIIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
M +++ I +V+ LD G + SE++A+ + D G G S I+ IGG G ++ R
Sbjct: 61 MRILSHIKDSMYVIALDIKGKMVTSEELADFINDLGVRGNSNIALVIGGSLGLDEEVLHR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRVILLEQIYRAYRINSGEPYH 158
>gi|86142237|ref|ZP_01060747.1| hypothetical protein MED217_11344 [Leeuwenhoekiella blandensis
MED217]
gi|85830989|gb|EAQ49446.1| hypothetical protein MED217_11344 [Leeuwenhoekiella blandensis
MED217]
Length = 157
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
+ I+++ +GK ++ ++ Y +LK+Y E L++ + K T ++ + + E
Sbjct: 1 MNIKLLCIGKTDDRNLEALISVYTKRLKHYVNFE-LEIIPDLKKTKNLSEEQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N I++ D +++LDENG ++ S + A+ + ++G + F IGGPYG + +A
Sbjct: 60 ILNKITAQDQLILLDENGKELNSVKFADYLQKKMNSGIKTLVFVIGGPYGFSEAVYAKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L + EQ+YR +TIL+ + YHH
Sbjct: 120 GKVSLSKMTFSHQMIRLFITEQIYRGFTILRNEPYHH 156
>gi|293364513|ref|ZP_06611238.1| alpha/beta knot family protein [Streptococcus oralis ATCC 35037]
gi|307702803|ref|ZP_07639753.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|419778238|ref|ZP_14304133.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK10]
gi|291317021|gb|EFE57449.1| alpha/beta knot family protein [Streptococcus oralis ATCC 35037]
gi|307623659|gb|EFO02646.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|383187456|gb|EIC79907.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK10]
Length = 159
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E +++ P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFAKLEMIEVTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGERDFVVVLAIEGKTLSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|329955901|ref|ZP_08296704.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides clarus YIT 12056]
gi|328525281|gb|EGF52331.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides clarus YIT 12056]
Length = 157
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++YI + + Y D+++ KNT + ++ E ++
Sbjct: 5 LLVVGRTVEQHFITAINDYIQRTRRYLSF-DMEVIPELKNTKSLSMDVQKEKEGELILKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ A+ +
Sbjct: 64 LQPGDVVVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSPKVYAAAHEKLS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 124 LSRMTFSHQMIRLIFVEQLYRAMTILNGGPYHH 156
>gi|325955207|ref|YP_004238867.1| ribosomal RNA large subunit methyltransferase H [Weeksella virosa
DSM 16922]
gi|323437825|gb|ADX68289.1| Ribosomal RNA large subunit methyltransferase H [Weeksella virosa
DSM 16922]
Length = 157
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN--TGDVKAQIKDEDMA 133
+ I + VGK ++ ++ +Y + Y + L+L ++ KN T ++ Q E
Sbjct: 1 MNIFTLCVGKTDEQAIEQLLQKYEKRFPTYINYQRLEL-ADIKNRKTLTIEQQKSKEADL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ D VV+LDE G I S A+ + + + + F IGGPYG ++ +RAN
Sbjct: 60 LLQRINKGDLVVLLDEKGKQINSTDFAQQLQNDLNQSVKTLIFVIGGPYGFDDRLYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M HQ+ L L EQ+YR++TIL+ + YHH
Sbjct: 120 RKLSLSQMTFTHQMVRLFLTEQIYRAFTILQNKPYHH 156
>gi|417940152|ref|ZP_12583440.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK313]
gi|343389033|gb|EGV01618.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK313]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EYI ++ + K+E ++L P ++ Q + E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYIKRISRFAKLEMIELADEKIPDKASKLENQKILGTEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGERDFVVVLAIEGKILSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|149279619|ref|ZP_01885748.1| hypothetical protein PBAL39_08200 [Pedobacter sp. BAL39]
gi|149229655|gb|EDM35045.1| hypothetical protein PBAL39_08200 [Pedobacter sp. BAL39]
Length = 157
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I ++ VGK + +++Y+ +LK+Y L + N KN + + K+ D+
Sbjct: 1 MKITLLVVGKTEDKYLIEGIEKYLKRLKHYIGFNLLVIPDVKNTKNLTTDQQKSKEADL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +++ D +V+LDE G S ++ + + F IGGPYG ++ ERAN
Sbjct: 60 ILKQLNNTDTIVLLDEKGKKYTSVLFSDYLNKQMIGSVQHLMFIIGGPYGFDERIYERAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
S+ LS M +HQ+ L VEQLYR+++ILKG+ YHH
Sbjct: 120 GSLSLSDMTFSHQMVRLFFVEQLYRAFSILKGEPYHH 156
>gi|145423869|gb|ABP68568.1| OrfX [Staphylococcus sciuri]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQIKDEDMA 133
+ I +ITVGK + + VDEY +L Y K E +++ P N D +I E A
Sbjct: 1 MKITIITVGKLKEKYWKQAVDEYNKRLGAYTKTELIEVADEKAPDNMSDKDIEIVKEKEA 60
Query: 134 --VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M+ I D +V+ L+ G + SE++++ + + + G S I+F IGG G K+ +R
Sbjct: 61 DRIMSKIKQDSYVITLEIQGKMLTSEELSKEIDNLMTRGNSHITFIIGGSNGLHQKVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR++ I++G++YH
Sbjct: 121 SNYALSFSKMTFPHQMMKVILMEQVYRAFKIMRGESYH 158
>gi|260584274|ref|ZP_05852021.1| alpha/beta knot family protein [Granulicatella elegans ATCC 700633]
gi|260157792|gb|EEW92861.1| alpha/beta knot family protein [Granulicatella elegans ATCC 700633]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +I+VGK + ++ +DEY +L YCK++ +++ P+N + + Q+KD E
Sbjct: 1 MNITIISVGKLKEKYLKQGIDEYAKRLGSYCKLQLIEVPDEKAPENLSEKEMEQVKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D V+ + G I SEQ+AE + + G G S I F IGG G +++R
Sbjct: 61 EKILAKVKDSDTVIAMAIEGDLISSEQLAEKIENYGINGKSSIVFIIGGSLGLSDTVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN I + L HQ+ LVLVEQ+YRS+ I G YH
Sbjct: 121 ANAKISFGRITLPHQLMRLVLVEQIYRSFRITAGHAYH 158
>gi|188589201|ref|YP_001922676.1| rRNA large subunit methyltransferase [Clostridium botulinum E3 str.
Alaska E43]
gi|238689655|sp|B2V1Q9.1|RLMH_CLOBA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|188499482|gb|ACD52618.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI-KD-ED 131
+ I +I+VGK + ++ +DEY +L YCK+ +LQ P N + I KD E
Sbjct: 1 MNITIISVGKLKEKYLKHAIDEYSKRLSRYCKLNIVELQDEQTPDNASEKDELIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ LD G I SE++++ + + G G S + F IGG G + +R
Sbjct: 61 NKILNSIKDNMYVITLDLKGKMISSEELSKFIDNCGVRGNSNLCFIIGGSLGLSEAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N S+ S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 SNYSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158
>gi|404498051|ref|YP_006722157.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase [Geobacter
metallireducens GS-15]
gi|418065995|ref|ZP_12703363.1| protein of unknown function DUF163 [Geobacter metallireducens RCH3]
gi|118574646|sp|Q39QQ9.1|RLMH_GEOMG RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|78195648|gb|ABB33415.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase, putative
[Geobacter metallireducens GS-15]
gi|373561228|gb|EHP87467.1| protein of unknown function DUF163 [Geobacter metallireducens RCH3]
Length = 154
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++++ VGK + ++ +DEY G+++ Y +E + R + +A E +
Sbjct: 1 MKLKILWVGKTQEEWLRRGIDEYTGRIRRYTPLEIAEARE--EKGAAAEAMRTRECERLE 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ + +V+LDE G + S ++A MG + + F IGG YG R RA+
Sbjct: 59 KLVPKNARLVLLDERGDQLTSPELAAFMGKCRDSAVPEMVFAIGGAYGFADSFRARADRV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + HQ+ ++L+EQ+YR+ TIL G+ YHH
Sbjct: 119 LALSRLTFTHQMVRVILLEQIYRAHTILNGEPYHH 153
>gi|260888054|ref|ZP_05899317.1| alpha/beta knot family protein [Selenomonas sputigena ATCC 35185]
gi|330839940|ref|YP_004414520.1| hypothetical protein Selsp_2114 [Selenomonas sputigena ATCC 35185]
gi|260862207|gb|EEX76707.1| alpha/beta knot family protein [Selenomonas sputigena ATCC 35185]
gi|329747704|gb|AEC01061.1| Conserved hypothetical protein CHP00246 [Selenomonas sputigena ATCC
35185]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ IR++ VGK + ++ V EY +L + VE L+ R +N + + Q + E
Sbjct: 1 MKIRIVAVGKLKEKYLREGVAEYEKRLAPFASVELLETREEYMAENPSEAQRQQTLAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ ++ ++++LD G + SE +A+ + G S ++F IGG +G P +R+R
Sbjct: 61 ERLLRLVPERSFLIVLDVKGKLLSSEALAKELASLALQGQSDLTFLIGGAFGLSPAVRDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ I S M HQ+ L+L EQ+YR++ I +G+ YH
Sbjct: 121 ADLRISFSPMTFTHQMVRLLLYEQIYRAFKINRGEKYH 158
>gi|170761317|ref|YP_001788909.1| rRNA large subunit methyltransferase [Clostridium botulinum A3 str.
Loch Maree]
gi|238688505|sp|B1KTH1.1|RLMH_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|169408306|gb|ACA56717.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N + I + E
Sbjct: 1 MNISIISVGKIKEKFLRAAIDEYSKRLSKYCKLNIIEVTDEKTPDNASLKEENIIREKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I +++V+ +D G I SE+ ++L+ + TG S I+F IGG G ++ R
Sbjct: 61 SLILKHIKDNNFVIAIDLKGKSIASEEFSDLIENCRLTGNSTIAFVIGGSLGLSQQVLSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>gi|402298513|ref|ZP_10818198.1| rRNA large subunit methyltransferase [Bacillus alcalophilus ATCC
27647]
gi|401726290|gb|EJS99528.1| rRNA large subunit methyltransferase [Bacillus alcalophilus ATCC
27647]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN-TGDVKAQIKD-EDMA 133
I +I+VGK + ++L ++EY +L Y ++ +++ P+N + + Q+K E
Sbjct: 3 ITIISVGKLKEKYLKLGIEEYTKRLGAYGQIYLVEVPDEKAPENLSAAEEEQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N I +D V+ L G + SEQ+A+ + + + G S+++F IGG G ++ +RAN
Sbjct: 63 ILNKIPADSHVIALAIEGKQLTSEQLAQNLNNLATYGKSKVTFIIGGSLGLSNEVTQRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ LVLVEQ+YR++ I+KG+ YH
Sbjct: 123 EKLSFSKMTFPHQLMKLVLVEQVYRAFRIIKGEPYH 158
>gi|312866797|ref|ZP_07727010.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
parasanguinis F0405]
gi|311097580|gb|EFQ55811.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
parasanguinis F0405]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EYI +L + KVE L+L P ++ Q ++ E
Sbjct: 1 MKIKLITVGKLKEKYLKDGIAEYIKRLGRFAKVEQLELVDEKTPDRASQLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS ++V++L G SE+ ++ + ++G S ++F IGG G P++++R
Sbjct: 61 ERILSKISDKEYVIVLAIEGKQFPSEKFSQTIDQIMTSGYSNLTFVIGGSLGLSPEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 GNLLMSFGQLTLPHQLMKLVLVEQIYRAFMIQQGSPYH 158
>gi|182417020|ref|ZP_02948399.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669653|ref|ZP_04529631.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182379117|gb|EDT76620.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237654887|gb|EEP52449.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 159
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-ED 131
+ I +I+VGK + ++L +DEY +L YCK+ ++L P N + I KD E
Sbjct: 1 MNITIISVGKLKEKYLKLAIDEYSKRLSRYCKLNIIELSDEQTPDNASEKDELIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I +V+ LD G + SE++++ + G G S + F IGG G + +R
Sbjct: 61 QKILNSIKDTMFVITLDLKGKMLSSEELSKFIDTCGVRGDSNLCFVIGGSLGLSDAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN S+ S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158
>gi|374629463|ref|ZP_09701848.1| Ribosomal RNA large subunit methyltransferase H [Methanoplanus
limicola DSM 2279]
gi|373907576|gb|EHQ35680.1| Ribosomal RNA large subunit methyltransferase H [Methanoplanus
limicola DSM 2279]
Length = 161
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDEDMA 133
+R+I +GK + + ++EY+ +L+ Y E +Q+ S P+ K+ + E
Sbjct: 5 VRIIAIGKIKERYISEGIEEYLKRLRPYAGTEIMQVPDESIPEKASPATEKSILNKEGDK 64
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
V+ I +D+V++LD G + SE +AE++ + + +I FCIGG G ++ RA+
Sbjct: 65 VLKYIGCEDFVILLDLWGKEYSSENIAEIISEQELSCRGKIIFCIGGSLGVSDALKSRAD 124
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I KLSS+ HQ L++VEQ+YR++ I + + YH
Sbjct: 125 IRWKLSSLTFPHQFVRLLIVEQIYRAFKISRKEKYHR 161
>gi|329965104|ref|ZP_08302073.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides fluxus YIT 12057]
gi|328523932|gb|EGF51010.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides fluxus YIT 12057]
Length = 157
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++Y+ + K Y D+++ KNT + +++ E ++
Sbjct: 5 LLVVGRTVEQHFITAINDYVQRTKRYLSF-DMEVIPELKNTKSLSMEVQKEKEGELILKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D +V+LDE G ++ S + A+ M +T R+ F IGGPYG K+ E A+ +
Sbjct: 64 LQPGDVIVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFIIGGPYGFSRKVYETAHEKMS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TIL G YHH
Sbjct: 124 LSRMTFSHQMVRLIFVEQLYRAMTILNGGPYHH 156
>gi|28202370|gb|AAO34816.1| conserved protein [Clostridium tetani E88]
Length = 189
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 66 SFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNT 120
++I N + I +I+VGK + ++L V+EY +L YCK V D + N
Sbjct: 21 NYIKNNRSIYMNITIISVGKLKEKYLKLAVEEYSKRLSRYCKLNIIEVTDEKTPDNASEK 80
Query: 121 GDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180
+++ + K+ D+ + NI + +V+ LD NG ++ S + + D G G S ++F IGG
Sbjct: 81 EELQIKEKEGDLILKNI-KDNMFVIALDLNGNELTSIDFSNFINDLGIKGESNLTFVIGG 139
Query: 181 PYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
G K+ R+N + S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 140 SLGLSSKVLSRSNYKLCFSKMTFPHQLFRVMLLEQIYRGYRIMNGEPYH 188
>gi|357419753|ref|YP_004932745.1| hypothetical protein Tlie_0915 [Thermovirga lienii DSM 17291]
gi|355397219|gb|AER66648.1| protein of unknown function DUF163 [Thermovirga lienii DSM 17291]
Length = 154
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I ++TVGK ++ V+ + EY+ +LK + ++ + RS KN V +++E
Sbjct: 1 MKIEILTVGKPKASYVKDGLSEYLKRLKVHLPLSMKHVPDRSKRKNAEKV---LEEEGKE 57
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ + +D++V+LD +G + S A + + ++ FC+GG YG ++ RAN
Sbjct: 58 ILSTVGDEDFLVLLDVDGRLVDSVSFAAWVQKKLNETPKKLIFCVGGAYGVSEDVKRRAN 117
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M H+++LL+LVEQLYR+ I KG YHH
Sbjct: 118 FLLSLSPMTFPHEMSLLILVEQLYRAVMINKGSAYHH 154
>gi|297172272|gb|ADI23250.1| uncharacterized conserved protein [uncultured nuHF2 cluster
bacterium HF0770_13K08]
Length = 157
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
IR+I +GK + VQ + Y+ KL +Y KV+ +++ N+G + E ++
Sbjct: 4 IRLIWIGKSQEPFVQDGIKVYLKKLSHYIKVDFEEIKPVKYNSGTTDQWRRQETEKLLKR 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ S + + LDE+G S+ +A G R++F IGG YG M ++
Sbjct: 64 LDSSELNIFLDESGKRETSKSLARWFEKQIPLGWRRVNFFIGGAYGFDKTMLPSGVKLLR 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M HQ+ L+ +EQLYR++TI++G+ YHH
Sbjct: 124 LSDMTFTHQMVRLIFLEQLYRAFTIMRGEQYHH 156
>gi|312864115|ref|ZP_07724350.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
vestibularis F0396]
gi|311100347|gb|EFQ58555.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
vestibularis F0396]
Length = 167
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN + +++ITVGK + ++ + EYI +L + K E ++L P N +
Sbjct: 3 MCYN--EPMKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELMDEKTPDNASEAEN 60
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 61 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQAALRGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
PK+++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 LSPKVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 166
>gi|168181038|ref|ZP_02615702.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum
NCTC 2916]
gi|226951025|ref|YP_002806116.1| rRNA large subunit methyltransferase [Clostridium botulinum A2 str.
Kyoto]
gi|254807111|sp|C1FNH5.1|RLMH_CLOBJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|182668079|gb|EDT80058.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum
NCTC 2916]
gi|226840792|gb|ACO83458.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum A2
str. Kyoto]
Length = 159
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVADEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKSITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSE 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>gi|253681253|ref|ZP_04862051.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
botulinum D str. 1873]
gi|253562491|gb|EES91942.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
botulinum D str. 1873]
Length = 159
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++ +DEY +L YCK+ ++L P N + I + E
Sbjct: 1 MNITIICVGKLKEKYLKQAIDEYSKRLSRYCKLNIVELNDEKTPDNASEKDELIIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
M +++ I +V+ LD G + SE++A+L+ D G G S I+ +GG G ++ R
Sbjct: 61 MRILSHIKDSMYVIALDIKGKMVTSEELADLINDLGVRGNSNIALVVGGSLGLDEEILHR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRVILLEQIYRAYRINSGEPYH 158
>gi|339630046|ref|YP_004721689.1| hypothetical protein TPY_3794 [Sulfobacillus acidophilus TPY]
gi|379009147|ref|YP_005258598.1| ribosomal RNA large subunit methyltransferase H [Sulfobacillus
acidophilus DSM 10332]
gi|339287835|gb|AEJ41946.1| K00783 hypothetical protein [Sulfobacillus acidophilus TPY]
gi|361055409|gb|AEW06926.1| Ribosomal RNA large subunit methyltransferase H [Sulfobacillus
acidophilus DSM 10332]
Length = 154
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
IR++TVGK R + + +EY+ +L + D ++ V+ ++DE + +
Sbjct: 3 IRLLTVGKPRDPRLVTLTEEYLSRLPGWQWQWDW-IKDEAHGDDAVERTLRDEKERLTSR 61
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I DD++V+LD G + S Q+AE + G R++F +GG YG ++ RA+
Sbjct: 62 IKPDDYLVLLDVEGQAVTSPQLAERLAKWLQAG-RRVTFLVGGSYGVHSDLQRRADWRWS 120
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + H + L++ EQ+YR+WTI+KG YH
Sbjct: 121 LSQLTFPHALVPLLVSEQIYRAWTIMKGHPYH 152
>gi|387819850|ref|YP_005680197.1| LSU m3Psi1915 methyltransferase RlmH [Clostridium botulinum H04402
065]
gi|322807894|emb|CBZ05469.1| LSU m3Psi1915 methyltransferase RlmH ## ybeA [Clostridium botulinum
H04402 065]
Length = 159
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKSITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSE 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>gi|312865854|ref|ZP_07726076.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
downei F0415]
gi|311098729|gb|EFQ56951.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
downei F0415]
Length = 159
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ +++ITVGK + ++ + EYI +L + K E ++L ++ K + QI D E
Sbjct: 1 MKVKLITVGKLKENYLKDGMQEYIKRLGRFTKFEAIELADEKTPDKASAAQNQQIMDREA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M IS D+V++L G + SE+ + + DA G S ISF IGG G P++++R
Sbjct: 61 KRIMAKISERDFVIVLAIEGQEWSSEEFSRKLADATLRGFSDISFVIGGSLGLAPQVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I + YH
Sbjct: 121 ANLLMSFGRLTLPHQLMRLVLLEQVYRAFMIQEDSPYH 158
>gi|423302218|ref|ZP_17280241.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
finegoldii CL09T03C10]
gi|408471309|gb|EKJ89841.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
finegoldii CL09T03C10]
Length = 157
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K Y D+++ KNT + +++ E ++ + D VV+LDE+G
Sbjct: 20 INDYIQRTKRYITF-DMEVIPELKNTKSLSMEVQKEKEGELILKALQPGDVVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + A+ M +T R+ F IGGPYG K+ + A+ I +S M +HQ+ L+
Sbjct: 79 EMRSLEFADYMKRKMNTVNKRLVFIIGGPYGFSEKVYQAAHEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|401683702|ref|ZP_10815587.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
BS35b]
gi|418974288|ref|ZP_13522201.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK1074]
gi|383349328|gb|EID27272.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
oralis SK1074]
gi|400186742|gb|EJO20947.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
BS35b]
Length = 159
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E + L P ++ Q ++ E
Sbjct: 1 MRIKVVTVGKLKEKYLKDGIAEYTKRISRFAKLEMIGLADEKTPDKASKLENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGERDFVVVLAIEGKTLSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+SI + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSISFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|325269731|ref|ZP_08136342.1| alpha/beta knot family protein [Prevotella multiformis DSM 16608]
gi|324987932|gb|EGC19904.1| alpha/beta knot family protein [Prevotella multiformis DSM 16608]
Length = 156
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVMNI 137
++ VGK ++ + +D+Y+ ++ +Y ++ KNT + Q + E ++
Sbjct: 5 LLLVGKTQNKIFRSGIDDYVSRIGHYMPF-NVTTVPELKNTKSLSEDQQKRKEGELILKE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G ++ S + A + T R+ F IGGPYG P + RA+ S+
Sbjct: 64 IQPSDTVVLLDEHGKELRSVEFAGWLRQKQHT-VRRLVFVIGGPYGFSPDIYARADDSVS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|291532342|emb|CBL05455.1| conserved hypothetical protein TIGR00246 [Megamonas hypermegale
ART12/1]
Length = 159
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 94/159 (59%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I ++ GK + ++ ++E++ +LK + ++E + +++ NP + + KA + E
Sbjct: 1 MKISIVASGKIKEKYLRDGINEFVKRLKPFTQLEFIEINEEKMKDNP-SPAEKKATLTAE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + ++ ++++LD G DI SE+++ + +G S I+F IGG +G ++R+
Sbjct: 60 GERLLKKVPANSYLIVLDVFGKDISSEELSAKIDKLTLSGQSHITFLIGGAFGLSEEVRK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 120 RADERISFSRMTFTHQMIRLLLVEQIYRAFKISRGEKYH 158
>gi|409197751|ref|ZP_11226414.1| rRNA large subunit methyltransferase [Marinilabilia salmonicolor
JCM 21150]
Length = 154
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMAVMNI 137
++ VGK +Q V +Y +L +Y E ++ + KN G +K+++ + E +++
Sbjct: 2 LLMVGKTAESWLQQGVKQYFDRLTHYLPFE-AKILPDIKNAGKMKSEVLKQMEGDSILKN 60
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ + D +V+LDE G S +E M GA R+ F IGG +G + +RAN I
Sbjct: 61 LENSDQLVLLDEGGKIFSSRGFSEYMEKQMLGGARRLIFVIGGAWGFSDDVYQRANGKIS 120
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TILK + YHH
Sbjct: 121 LSRMTFSHQMVRLIFAEQLYRAMTILKNEPYHH 153
>gi|380696236|ref|ZP_09861095.1| rRNA large subunit methyltransferase [Bacteroides faecis MAJ27]
Length = 157
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++YI + K + D+++ KNT + ++ E ++ + D +V+LDE+G
Sbjct: 20 INDYIQRTKRFITF-DMEVIPELKNTKSLSMDLQKEKEGELILKALQPGDVIVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + AE M +T R+ F IGGPYG K+ + AN I +S M +HQ+ L+
Sbjct: 79 EMRSLEFAEYMKRKMNTVNKRLVFIIGGPYGFSEKVYQVANEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|445384342|ref|ZP_21427534.1| rRNA large subunit methyltransferase [Streptococcus thermophilus
MTCC 5460]
gi|445396559|ref|ZP_21429273.1| rRNA large subunit methyltransferase [Streptococcus thermophilus
MTCC 5461]
gi|444748049|gb|ELW73041.1| rRNA large subunit methyltransferase [Streptococcus thermophilus
MTCC 5460]
gi|444748081|gb|ELW73072.1| rRNA large subunit methyltransferase [Streptococcus thermophilus
MTCC 5461]
Length = 159
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|315612162|ref|ZP_07887077.1| alpha/beta knot family protein [Streptococcus sanguinis ATCC 49296]
gi|315315723|gb|EFU63760.1| alpha/beta knot family protein [Streptococcus sanguinis ATCC 49296]
Length = 159
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIVEYTKRISRFAKLEMIELTDEKTPDKASELENQKILETEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + ++VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 ERILSKVGEREFVVVLAIEGKTLSSEEFSKQLEQASIKGYSTLTFIIGGSLGLAPVVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|167753188|ref|ZP_02425315.1| hypothetical protein ALIPUT_01459 [Alistipes putredinis DSM 17216]
gi|167659502|gb|EDS03632.1| putative rRNA large subunit m3Psi methyltransferase RlmH [Alistipes
putredinis DSM 17216]
Length = 187
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVM 135
I +I +GK S ++ ++ Y ++ +YC+ + + + KNT ++ K Q E +++
Sbjct: 33 IELIVIGKTDSKEIESLLAMYARRINFYCRFA-VTVLPDVKNTKNLSAKQQRTTEGASLL 91
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
D+VV+LDE G + S A + ++G R+ IGGPYG ++ RA+
Sbjct: 92 RQFGDGDYVVLLDERGDEYRSIDFAYWLQKRMASGIRRLVMVIGGPYGFSDEVYARADTK 151
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQI + EQ+YR++TIL + YHH
Sbjct: 152 LSLSKMTFSHQIVRAIFAEQIYRAFTILNNEPYHH 186
>gi|262281642|ref|ZP_06059411.1| UPF0247 protein [Streptococcus sp. 2_1_36FAA]
gi|262262096|gb|EEY80793.1| UPF0247 protein [Streptococcus sp. 2_1_36FAA]
Length = 159
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +L + KVE ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKEGIAEYSKRLSRFTKVEIIELADEKTPDKASPLENQQILSKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + ++V++L G SE+ ++++ DA G S I+F IGG G PK++ER
Sbjct: 61 ERILSKVLDREFVIVLAIEGQQFPSEKFSKVIEDASVRGFSDITFIIGGSLGLSPKVKER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGQLTLPHQLMRLVLMEQIYRAFMIQQGSPYH 158
>gi|397903914|ref|ZP_10504850.1| LSU m3Psi1915 methyltransferase RlmH ## ybeA [Caloramator
australicus RC3]
gi|343178657|emb|CCC57749.1| LSU m3Psi1915 methyltransferase RlmH ## ybeA [Caloramator
australicus RC3]
Length = 159
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-ED 131
+ + +I+VGK + ++ + EY+ +L Y KVE +++ P+N + + + +KD E
Sbjct: 1 MNLTIISVGKLKEKYLKEGISEYLKRLSKYAKVEIIEVPDEKAPENLSEREEENVKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ LD NG ++ SE+ A+ + G+S I+F IGG G + R
Sbjct: 61 QNILKHIKDNMYVIALDINGKNLSSEEFAQFLNQRAIEGSSSIAFIIGGSIGLSKDVLNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I+ G+ YH
Sbjct: 121 ADFKLSFSKMTFPHQLMRLILLEQIYRAYRIISGEPYH 158
>gi|429725000|ref|ZP_19259861.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella sp. oral taxon 473 str. F0040]
gi|429151462|gb|EKX94330.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella sp. oral taxon 473 str. F0040]
Length = 157
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVK-AQIKD-EDMA 133
+ + ++ VG+ + ++ +Y+ ++K+Y E L++ KNT + AQ K+ E
Sbjct: 1 MKLHLLVVGRTVDAHLNALITDYVSRIKHYIPFE-LEVIPELKNTKALSTAQQKEREGQL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + DWVV++DE G + S + A+ + S+ + R+ IGGPYG ++ A
Sbjct: 60 ILKSLKEGDWVVLMDEGGKEYRSIEFADYLHRRQSSVSKRMVLIIGGPYGFSSEIYALAK 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L L EQ+YR+ TIL+G+ YHH
Sbjct: 120 EKLSLSKLTFSHQMVRLFLTEQIYRAMTILRGEPYHH 156
>gi|410458083|ref|ZP_11311846.1| hypothetical protein BAZO_02876 [Bacillus azotoformans LMG 9581]
gi|409931711|gb|EKN68687.1| hypothetical protein BAZO_02876 [Bacillus azotoformans LMG 9581]
Length = 159
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKD-EDMA 133
I + +VGK + ++ +DEY+ +L Y K+E +++ P+N +V+ Q+KD E
Sbjct: 3 ISIFSVGKLKEKYLKQGIDEYLKRLGPYAKIEVIEVADEKAPENLSEVEMEQVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D +V++L G + SE++A + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISDDTYVIILAIQGKMLTSEELAREIDQLATYGKSKIAFVIGGSLGLSKAVEKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M HQ+ L+LVEQ+YR++ I + + YH
Sbjct: 123 YALSFSKMTFPHQLMRLILVEQIYRAFRINRNEPYH 158
>gi|170755874|ref|YP_001783208.1| rRNA large subunit methyltransferase [Clostridium botulinum B1 str.
Okra]
gi|429245282|ref|ZP_19208682.1| rRNA large subunit methyltransferase [Clostridium botulinum
CFSAN001628]
gi|229564356|sp|B1IH25.1|RLMH_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|169121086|gb|ACA44922.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum B1
str. Okra]
gi|428757661|gb|EKX80133.1| rRNA large subunit methyltransferase [Clostridium botulinum
CFSAN001628]
Length = 159
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKAITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSE 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>gi|383125432|ref|ZP_09946072.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
1_1_6]
gi|382983328|gb|EES65825.2| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
1_1_6]
Length = 166
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDED 131
R + ++ VG+ +++YI + K + D+++ KNT + + Q + E
Sbjct: 8 RRMKTTLLVVGRTVEQHYITAINDYIQRTKRFITF-DMEVIPELKNTKSLSMEQQKEKEG 66
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D +V+LDE+G ++ S + A+ M +T R+ F IGGPYG K+ +
Sbjct: 67 ELILKALQPGDVIVLLDEHGKEMRSLEFADYMKRKMNTVNKRLVFIIGGPYGFSEKVYQV 126
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
AN I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 127 ANEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|222150276|ref|YP_002559429.1| rRNA large subunit methyltransferase [Macrococcus caseolyticus
JCSC5402]
gi|254807122|sp|B9E922.1|RLMH_MACCJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|222119398|dbj|BAH16733.1| cassette chromosome attachment site gene orfX [Macrococcus
caseolyticus JCSC5402]
Length = 159
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL----RSNPKNTGDVKAQIKDED 131
+ I +ITVGK + ++ VDEY+ +L Y K+E +++ S+ + D++ + E
Sbjct: 1 MKITIITVGKLKEKYWKMAVDEYVKRLGAYSKIELVEVADEKDSDNMSEKDIEIAKRKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D +V L+ G + S Q+A+ M +TG S ++F IGG G + +R
Sbjct: 61 ERILSKVKDDSFVYTLEILGKQLDSVQLAKEMEQKMNTGKSHLTFIIGGSNGLHQNVMDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR + I+KGQ YH
Sbjct: 121 SNYALSFSKMTFPHQMMKVILLEQIYRGFRIMKGQAYH 158
>gi|357237881|ref|ZP_09125220.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
ictaluri 707-05]
gi|356753385|gb|EHI70500.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
ictaluri 707-05]
Length = 159
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDMA 133
+ I+VI VGK + ++ + EY +L +C+ E ++L P + + Q+ E A
Sbjct: 1 MKIKVICVGKLKEHYLKDGLSEYQKRLSRFCQFEMIELVDEKTPDKASNAENQLIMEKEA 60
Query: 134 --VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE+ ++L+ D G S I+F IGG G PK+++R
Sbjct: 61 DRIEKKIGQRDFVIALAIEGKQFPSEKFSQLITDTTVNGYSDITFIIGGSLGLAPKIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGLLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|386087622|ref|YP_006003496.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
thermophilus ND03]
gi|386345751|ref|YP_006041915.1| hypothetical protein STH8232_2335 [Streptococcus thermophilus JIM
8232]
gi|312279335|gb|ADQ63992.1| Ribosomal RNA large subunit methyltransferase H [Streptococcus
thermophilus ND03]
gi|339279212|emb|CCC20960.1| hypothetical UPF0247 protein str2023 [Streptococcus thermophilus
JIM 8232]
Length = 167
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN + +++ITVGK + ++ + EYI +L + K E ++L P N +
Sbjct: 3 MCYN--EPMKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASEAEN 60
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 61 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
PK+++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 LSPKVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 166
>gi|409099169|ref|ZP_11219193.1| hypothetical protein PagrP_12431 [Pedobacter agri PB92]
Length = 157
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I +I +GK + +++YI +LK+Y L L N KN + + + K+ ++
Sbjct: 1 MKITLIAIGKTEDKYLIEGIEKYINRLKHYINFTFLPLPDVKNVKNLSEAQQKAKEAEL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I++ D V++LDE G S + + + + F IGGPYG + +RAN
Sbjct: 60 LNKQINNGDVVILLDEKGKKYSSVEFSNYLNKQMIGSVQHLIFIIGGPYGFDETIYKRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L VEQLYR ++ILKG+ YHH
Sbjct: 120 GLISLSDMTFSHQMIRLFFVEQLYRGFSILKGEPYHH 156
>gi|325291399|ref|YP_004267580.1| ribosomal RNA large subunit methyltransferase H [Syntrophobotulus
glycolicus DSM 8271]
gi|324966800|gb|ADY57579.1| Ribosomal RNA large subunit methyltransferase H [Syntrophobotulus
glycolicus DSM 8271]
Length = 160
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDED 131
L +++ VGK R +Q + EY+ +L Y K++ +L P ++A+ + E
Sbjct: 2 LQVKITAVGKIREKYLQDGIKEYLKRLGGYLKIQIEELGDEPCPEKSLQAEEEKIKRKEG 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +++ D+VV+LD +G + S +AE + D G SRI F IGG G ++R R
Sbjct: 62 DKILKTLTAQDYVVLLDLDGSQLDSAGLAEFLEDKALQGQSRICFVIGGSLGVSDEVRAR 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S + HQ+ ++L+EQLYR+ I +G+ YH
Sbjct: 122 ADFRWSFSKLTFPHQLMRMLLLEQLYRACRISRGEPYH 159
>gi|169342262|ref|ZP_02863342.1| alpha/beta knot family protein [Clostridium perfringens C str.
JGS1495]
gi|422875549|ref|ZP_16922034.1| rRNA large subunit methyltransferase [Clostridium perfringens F262]
gi|169299643|gb|EDS81701.1| alpha/beta knot family protein [Clostridium perfringens C str.
JGS1495]
gi|380303431|gb|EIA15734.1| rRNA large subunit methyltransferase [Clostridium perfringens F262]
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I VI+VGK + ++ +DEY +L YCK+E ++L P N + + QIK+ E
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRYCKLEIIELPDEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + V+ +D G +I SE+ ++ + + G G S I+F IGG G ++ +R
Sbjct: 61 KLILSKIKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSEEVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYH 158
>gi|229221135|ref|YP_140432.2| rRNA large subunit methyltransferase [Streptococcus thermophilus
LMG 18311]
gi|229557981|ref|YP_142347.2| rRNA large subunit methyltransferase [Streptococcus thermophilus
CNRZ1066]
gi|90185242|sp|Q5LXI0.2|RLMH_STRT1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|90185243|sp|Q5M229.2|RLMH_STRT2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ L+LVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLILVEQIYRAFMIQQGSPYH 158
>gi|126651960|ref|ZP_01724152.1| hypothetical protein BB14905_03505 [Bacillus sp. B14905]
gi|126591229|gb|EAZ85338.1| hypothetical protein BB14905_03505 [Bacillus sp. B14905]
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +++VGK + +++ +DEY+ +L Y K++ +++ P+ D + I K E
Sbjct: 3 ITIVSVGKLKEKYLKMGIDEYVKRLGGYAKMDLIEVPDEKAPEQLSDAEMDIVKKKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS+D +V+ L NG SEQMA + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISADTYVIALAINGKMKTSEQMAADLESLMTYGKSKIAFVIGGSLGLHEDVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
M L HQ+ LVLVEQ+YRS+ I+KG+ YH
Sbjct: 123 EQQSFGKMTLPHQLMKLVLVEQVYRSFRIMKGEPYH 158
>gi|23100834|ref|NP_694301.1| hypothetical protein OB3379 [Oceanobacillus iheyensis HTE831]
gi|32171837|sp|Q8EL52.1|RLMH_OCEIH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|22779068|dbj|BAC15335.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----EDMA 133
I +++VGK + ++ +DEY +L Y KV +++ +A++K+ E
Sbjct: 3 ITIVSVGKLKEKYLKQGIDEYKKRLNAYAKVSIIEVADEKAPETMSEAEMKEVKRKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+ D +V+ L+ G +GSEQ+A+ + + + G S++ F IGG G ++ R++
Sbjct: 63 ILSSIAPDAFVITLEIEGKMLGSEQLAKKLDELATYGKSKVVFVIGGSLGISQDVQRRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ S M HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 123 LALSFSKMTFPHQLMRLVLIEQVYRSFRINRGEPYH 158
>gi|270340041|ref|ZP_06203529.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332939|gb|EFA43725.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 156
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
+I +GK ++ +D+Y+ ++K+Y E +++ KNT ++ ++ E ++ +
Sbjct: 5 LILIGKTQNKHFIAGIDDYVKRIKHYQPFE-IKVIPELKNTKNLPEDVQKEKEGELLLKL 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D +V+LDE G++ S + A + + +T + ++ IGGPYG + RA+ I
Sbjct: 64 IQPSDTLVLLDEKGVEFRSVEFASWLQNRQNT-SRKLVISIGGPYGFSKDVYRRADEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQ YR+ TI+KG YHH
Sbjct: 123 LSRMTFSHQMVRLIFVEQFYRACTIIKGDPYHH 155
>gi|55737975|gb|AAV61617.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55739891|gb|AAV63532.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 165
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 7 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 66
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 67 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 126
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ L+LVEQ+YR++ I +G YH
Sbjct: 127 ANQLMSFGLLTFPHQLMRLILVEQIYRAFMIQQGSPYH 164
>gi|18311582|ref|NP_563516.1| rRNA large subunit methyltransferase [Clostridium perfringens str.
13]
gi|110798803|ref|YP_697291.1| rRNA large subunit methyltransferase [Clostridium perfringens ATCC
13124]
gi|110803010|ref|YP_699857.1| rRNA large subunit methyltransferase [Clostridium perfringens
SM101]
gi|168209844|ref|ZP_02635469.1| alpha/beta knot family protein [Clostridium perfringens B str. ATCC
3626]
gi|168214941|ref|ZP_02640566.1| alpha/beta knot family protein [Clostridium perfringens CPE str.
F4969]
gi|168217370|ref|ZP_02642995.1| alpha/beta knot family protein [Clostridium perfringens NCTC 8239]
gi|182626490|ref|ZP_02954240.1| alpha/beta knot family protein [Clostridium perfringens D str.
JGS1721]
gi|422347667|ref|ZP_16428578.1| ribosomal RNA large subunit methyltransferase H [Clostridium
perfringens WAL-14572]
gi|32171875|sp|Q8XH85.1|RLMH_CLOPE RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|118574617|sp|Q0SPV0.1|RLMH1_CLOPS RecName: Full=Ribosomal RNA large subunit methyltransferase H 1;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase 1; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH 1
gi|118574634|sp|Q0TM49.1|RLMH_CLOP1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|18146266|dbj|BAB82306.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673450|gb|ABG82437.1| alpha/beta knot family protein [Clostridium perfringens ATCC 13124]
gi|110683511|gb|ABG86881.1| conserved hypothetical protein TIGR00246 [Clostridium perfringens
SM101]
gi|170712112|gb|EDT24294.1| alpha/beta knot family protein [Clostridium perfringens B str. ATCC
3626]
gi|170713630|gb|EDT25812.1| alpha/beta knot family protein [Clostridium perfringens CPE str.
F4969]
gi|177908176|gb|EDT70740.1| alpha/beta knot family protein [Clostridium perfringens D str.
JGS1721]
gi|182380620|gb|EDT78099.1| alpha/beta knot family protein [Clostridium perfringens NCTC 8239]
gi|373223715|gb|EHP46061.1| ribosomal RNA large subunit methyltransferase H [Clostridium
perfringens WAL-14572]
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I VI+VGK + ++ +DEY +L YCK+E ++L P N + + QIK+ E
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRYCKLEIIELPDEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + V+ +D G +I SE+ ++ + + G G S I+F IGG G ++ +R
Sbjct: 61 KLILSKIKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSQEVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYH 158
>gi|299140661|ref|ZP_07033799.1| SPOUT methyltransferase superfamily protein [Prevotella oris C735]
gi|298577627|gb|EFI49495.1| SPOUT methyltransferase superfamily protein [Prevotella oris C735]
Length = 156
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
++ VGK + + +Y ++++Y D+ + KNT ++ + Q + E ++
Sbjct: 5 LVLVGKTANKHFVAGIKDYHERIEHYMPF-DITVIPELKNTKNLSNEQQKEREGELILEQ 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S + A + T A R+ F IGGPYG P + RAN I
Sbjct: 64 IKPMDTVVLLDEHGAEYRSIEFANWLQKKQLT-ARRLVFVIGGPYGFSPSVYSRANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|229072728|ref|YP_821299.2| rRNA large subunit methyltransferase [Streptococcus thermophilus
LMD-9]
gi|229576685|sp|Q03I69.2|RLMH_STRTD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASESENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|229220632|ref|NP_780879.2| rRNA large subunit methyltransferase [Clostridium tetani E88]
gi|32171802|sp|Q899K8.1|RLMH_CLOTE RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I+VGK + ++L V+EY +L YCK V D + N +++ + K+
Sbjct: 1 MNITIISVGKLKEKYLKLAVEEYSKRLSRYCKLNIIEVTDEKTPDNASEKEELQIKEKEG 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
D+ + NI + +V+ LD NG ++ S + + D G G S ++F IGG G K+
Sbjct: 61 DLILKNI-KDNMFVIALDLNGNELTSIDFSNFINDLGIKGESNLTFVIGGSLGLSSKVLS 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R+N + S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 120 RSNYKLCFSKMTFPHQLFRVMLLEQIYRGYRIMNGEPYH 158
>gi|282857782|ref|ZP_06266991.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
gi|282584452|gb|EFB89811.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
Length = 156
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAV 134
+ I V+ +G+ R + ++ Y +LK VE L K AQ K+ E
Sbjct: 1 MKIEVLAMGRPREPFIVKGLEHYQTRLKPLLPVEWTFLPEPGKGKNLTVAQRKELEGQEF 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + +D + +LDE G +GSE+ + + A G R+ F +GGPYG +++R N+
Sbjct: 61 LKRVGREDILFLLDERGRALGSEEFSAGIYAALGGGRGRLVFLVGGPYGTSAALQKRGNV 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M H++ALL+L EQ+YR+ I +G YHH
Sbjct: 121 IISLSKMTFTHEMALLLLSEQIYRAAMIREGSKYHH 156
>gi|253702445|ref|YP_003023634.1| hypothetical protein GM21_3859 [Geobacter sp. M21]
gi|259491712|sp|C6E7L6.1|RLMH_GEOSM RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|251777295|gb|ACT19876.1| protein of unknown function DUF163 [Geobacter sp. M21]
Length = 154
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++++ VGK + V+ ++EY G+++ Y +E L+ R + + E +A
Sbjct: 1 MRLKLLWVGKTQESWVRTGIEEYAGRIRRYAPLEILEAREEKGAQAAAMRERECERLA-- 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+I +V+LDE G + S ++A + G + F IGG YG R +A S
Sbjct: 59 KLIPKGGRLVLLDERGEAMTSPELASFLSKNRDQGTQDLVFAIGGAYGFTDAFRSQAFKS 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M L HQ+ + L+EQ+YR +TI+ G+ YHH
Sbjct: 119 ISLSRMTLTHQMVRVFLLEQIYRGFTIINGEPYHH 153
>gi|168207691|ref|ZP_02633696.1| alpha/beta knot family protein [Clostridium perfringens E str.
JGS1987]
gi|170660994|gb|EDT13677.1| alpha/beta knot family protein [Clostridium perfringens E str.
JGS1987]
Length = 159
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I VI+VGK + ++ +DEY +L YCK+E ++L P N + + QIK+ E
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRYCKLEIIELPDEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + V+ +D G +I SE+ ++ + + G G S I+F IGG G ++ +R
Sbjct: 61 KLILSKIKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSQEVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIIKNEPYH 158
>gi|325281723|ref|YP_004254265.1| Ribosomal RNA large subunit methyltransferase H [Odoribacter
splanchnicus DSM 20712]
gi|324313532|gb|ADY34085.1| Ribosomal RNA large subunit methyltransferase H [Odoribacter
splanchnicus DSM 20712]
Length = 157
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I ++ +GK + ++ ++EY +L+ Y E +++ + KNT + Q + E +
Sbjct: 1 MKICLLVIGKTDADYIRAGIEEYEKRLRKYVGYE-MKVLPDVKNTKHMSEALQKEKEGLL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ D+V++LDE G GS + + + G R+ F IGGPYG + +A+
Sbjct: 60 LLEQFLPTDYVILLDERGKQYGSGEFSAFLAQKMLNGIKRLVFVIGGPYGFSEAVYRKAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ ++ EQ+YR+ TI+KG+ YHH
Sbjct: 120 ELLSLSKMTFSHQMVRMIFAEQIYRAMTIMKGEPYHH 156
>gi|116101957|gb|ABJ67103.1| Uncharacterized conserved protein [Streptococcus thermophilus
LMD-9]
Length = 165
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 7 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASESENKAILDKEG 66
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 67 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 126
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 127 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 164
>gi|322390521|ref|ZP_08064039.1| alpha/beta knot family protein [Streptococcus parasanguinis ATCC
903]
gi|337282960|ref|YP_004622431.1| alpha/beta knot family protein [Streptococcus parasanguinis ATCC
15912]
gi|417916988|ref|ZP_12560552.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
parasanguinis SK236]
gi|419800807|ref|ZP_14326063.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
parasanguinis F0449]
gi|321142795|gb|EFX38255.1| alpha/beta knot family protein [Streptococcus parasanguinis ATCC
903]
gi|335370553|gb|AEH56503.1| alpha/beta knot family protein [Streptococcus parasanguinis ATCC
15912]
gi|342831270|gb|EGU65589.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
parasanguinis SK236]
gi|385693707|gb|EIG24340.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
parasanguinis F0449]
Length = 159
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EYI +L + KVE ++L P ++ Q ++ E
Sbjct: 1 MKIKLITVGKLKEKYLKDGIAEYIKRLGRFAKVEQVELVDEKTPDRASQLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS ++V++L G SE+ ++ + ++G S ++F IGG G P++++R
Sbjct: 61 ERILSKISDKEYVIVLAIEGKQFPSEKFSQTIDQIMTSGYSNLTFVIGGSLGLSPEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 GNLLMSFGQLTLPHQLMKLVLVEQIYRAFMIQQGSPYH 158
>gi|333030202|ref|ZP_08458263.1| Ribosomal RNA large subunit methyltransferase H [Bacteroides
coprosuis DSM 18011]
gi|332740799|gb|EGJ71281.1| Ribosomal RNA large subunit methyltransferase H [Bacteroides
coprosuis DSM 18011]
Length = 170
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 70 YNCKRA-LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQ 126
+N K++ + + ++ VG+ + +Y + + Y D+Q+ KNT ++ + Q
Sbjct: 7 FNPKQSKMKVTLLVVGRTVESHFIKAIKDYTQRTQRYISF-DMQVIPELKNTKNITFEQQ 65
Query: 127 IKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
E + +S D++V+LDE+G ++ S + AE + T R+ F IGGPYG
Sbjct: 66 KAKEGEMICKALSPSDYIVLLDEHGKEMRSIEFAEWIEKKMMTVNKRLVFIIGGPYGFSQ 125
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
++ + AN + LS M +HQ+ L+ +EQLYR+ ILKG YHH
Sbjct: 126 EVYKLANEKMSLSKMTFSHQMIRLIFIEQLYRALNILKGGPYHH 169
>gi|56965850|ref|YP_177584.1| hypothetical protein ABC4093 [Bacillus clausii KSM-K16]
gi|61217537|sp|Q5WAI7.1|RLMH_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|56912096|dbj|BAD66624.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 159
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN--TGDVKAQIKDEDMA 133
I +++VGK + ++ +DEY +L Y K++++++ P++ T D++ K E
Sbjct: 3 ITILSVGKLKEKYIKQGIDEYKKRLSAYAKIQEIEVPDEKAPEHLSTEDMRLVKKKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS+D +V+ L G SEQ+A+ + G+ G S+I+F IGG G + RA+
Sbjct: 63 LLAKISADSYVIALAIEGNMKTSEQLAKNIEQLGTYGKSKIAFIIGGSLGLSNDVYARAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ LVL EQLYRS+ I++G+ YH
Sbjct: 123 ELLSFSKMTFPHQLMKLVLFEQLYRSFRIMRGEPYH 158
>gi|154483673|ref|ZP_02026121.1| hypothetical protein EUBVEN_01377 [Eubacterium ventriosum ATCC
27560]
gi|149735583|gb|EDM51469.1| rRNA large subunit m3Psi methyltransferase RlmH [Eubacterium
ventriosum ATCC 27560]
Length = 159
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-------RSNPKNTGDVKAQIK 128
+ I V+TVGK + +DEY +L YCK+ +Q+ S K +KA+
Sbjct: 1 MKITVLTVGKIKEKFYTAAIDEYSKRLSRYCKLNIIQVADEKTIENSTEKEMDIIKAK-- 58
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
E ++ I D +V+ L+ NG + SE++A+ + G G S I F IGG G +
Sbjct: 59 -EGERILKNIPDDAFVITLEINGKMLDSEELADKINKLGIMGESHIVFVIGGSLGLHQDV 117
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+RAN + S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 118 SKRANFKLSFSKMTFPHQLMRVILLEQIYRSYRIINNEPYH 158
>gi|402834566|ref|ZP_10883165.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Selenomonas sp. CM52]
gi|402277514|gb|EJU26588.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Selenomonas sp. CM52]
Length = 159
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ IR++ VGK + ++ V EY +L + VE L+ R +N + + Q + E
Sbjct: 1 MKIRIVAVGKLKEKYLREGVAEYEKRLAPFASVELLETREEYMAENPSEAQRQQTLAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ ++ ++++LD G + SE +A+ + G S ++F IGG +G P +R+R
Sbjct: 61 ERLLRLVPERSFLIVLDVKGKLLSSEALAKELASLALQGQSDLTFLIGGAFGLSPAVRDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ I S M HQ+ L+L EQ+YR + I +G+ YH
Sbjct: 121 ADLRISFSPMTFTHQMVRLLLYEQIYRVFKINRGEKYH 158
>gi|375086994|ref|ZP_09733385.1| rRNA large subunit m3Psi methyltransferase RlmH [Megamonas
funiformis YIT 11815]
gi|374563493|gb|EHR34807.1| rRNA large subunit m3Psi methyltransferase RlmH [Megamonas
funiformis YIT 11815]
Length = 159
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 94/159 (59%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I ++ GK + ++ ++E++ +LK + ++E + +++ NP + + KA + E
Sbjct: 1 MKISIVASGKIKEKYLRDGINEFVKRLKPFTQLEFIEINEEKMKDNP-SPAEKKATLIAE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + ++ ++++LD G DI SE+++ + +G S I+F IGG +G ++R+
Sbjct: 60 GERLLKKVPANSYLIVLDVFGKDISSEELSAKIDKLTLSGQSHITFLIGGAFGLSEEVRK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 120 RADERISFSRMTFTHQMIRLLLVEQIYRAFKISRGEKYH 158
>gi|260911689|ref|ZP_05918268.1| alpha/beta knot family protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260634186|gb|EEX52297.1| alpha/beta knot family protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 156
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 118 KNTGDVK-AQIKD-EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
KNT ++ +Q KD E ++ + +DD +V+LDE+G ++ S + A+ +G A R+
Sbjct: 42 KNTKNISFSQQKDAEGELILKKLQADDHLVLLDEHGKEMRSVEFADWLGRKQHV-ARRLV 100
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F +GGPYG + RAN + LS M +HQ+ L+ EQLYR+ TILKG+ YHH
Sbjct: 101 FVVGGPYGFSEAVYARANEKLSLSKMTFSHQMVRLIFTEQLYRACTILKGEPYHH 155
>gi|291545839|emb|CBL18947.1| conserved hypothetical protein TIGR00246 [Ruminococcus sp. SR1/5]
Length = 159
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-----E 130
+ I ++TVGK + ++ + EY +L YCK+E +++ S+ K + ++D E
Sbjct: 1 MKISILTVGKIKEKYLRDAIAEYSKRLGRYCKLEIIEV-SDEKTPDNASETVEDAIRNKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D +V+ L+ G + SE A + + G G S I F IGG G G ++ +
Sbjct: 60 GERLLKYIREDAFVITLEIGGEQLTSENFARKINELGIRGTSHIQFVIGGSIGLGKEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R++ ++ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 120 RSDYALSFSKMTFPHQLMRVILLEQIYRSYRIISGEPYH 158
>gi|323345250|ref|ZP_08085473.1| alpha/beta knot family protein [Prevotella oralis ATCC 33269]
gi|323093364|gb|EFZ35942.1| alpha/beta knot family protein [Prevotella oralis ATCC 33269]
Length = 156
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYY-----CKVEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I VGK + +D+Y+ ++ +Y + +L+ N N + Q + E
Sbjct: 1 MKIELIVVGKTVNKHFATCIDDYVSRINHYMPFSIVTIPELKKTKNITN----EQQKQQE 56
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D VV+LDE+G + S ++A + T A ++ GGPYG M
Sbjct: 57 GEIILRHIQPTDTVVLLDEHGKEYRSIELATWIEKKQHT-ARKLVLVTGGPYGFSKDMYA 115
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
RAN I LS M +HQ+ L+L EQLYR+ TI+KG+ YHH
Sbjct: 116 RANELISLSKMTFSHQMVRLILTEQLYRACTIIKGEPYHH 155
>gi|198275924|ref|ZP_03208455.1| hypothetical protein BACPLE_02107 [Bacteroides plebeius DSM 17135]
gi|198271553|gb|EDY95823.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides plebeius DSM 17135]
Length = 157
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVK--AQIKDEDMAVMNI 137
++ VGK + +Y+ ++K+Y D+++ KNT + Q + E A++
Sbjct: 5 LLVVGKTVEKHYITAIADYVERVKHYASF-DMEVIPELKNTKSLSMDQQKEKEGEAILKT 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE+G + S + A + T R+ F IGGPYG P + + A I
Sbjct: 64 LQPGDVVVLLDEHGKEFRSIEFANWIERKMHTVNKRLVFIIGGPYGFSPSVYQAAQEKIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ TIL YHH
Sbjct: 124 LSKMTFSHQMIRLIFVEQLYRAMTILNNGPYHH 156
>gi|423222883|ref|ZP_17209353.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
cellulosilyticus CL02T12C19]
gi|392640821|gb|EIY34613.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
cellulosilyticus CL02T12C19]
Length = 166
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA- 133
++ ++ VG+ +++Y+ + K Y E +++ KNT + +++ E
Sbjct: 9 SMKTTLLVVGRTVEQHFITAINDYVQRTKRYLSFE-MEVIPELKNTKSLSMEVQKEKEGE 67
Query: 134 -VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ D +V+LDE G ++ S + A+ M +T R+ F IGGPYG PK+ + A
Sbjct: 68 LICKAFQPGDVIVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFVIGGPYGFSPKVYQAA 127
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ + LS M +HQ+ L+ VEQLYR+ IL G YHH
Sbjct: 128 HEKMSLSKMTFSHQMVRLIFVEQLYRAMNILNGGPYHH 165
>gi|387910716|ref|YP_006341022.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
thermophilus MN-ZLW-002]
gi|387575651|gb|AFJ84357.1| Ribosomal RNA large subunit methyltransferase H [Streptococcus
thermophilus MN-ZLW-002]
Length = 167
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN + +++ITVGK + ++ + EYI +L + K E ++L P N +
Sbjct: 3 MCYN--EPMKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASESEN 60
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 61 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
PK+++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 LSPKVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 166
>gi|187935095|ref|YP_001887693.1| rRNA large subunit methyltransferase [Clostridium botulinum B str.
Eklund 17B]
gi|238691666|sp|B2TRC7.1|RLMH_CLOBB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|187723248|gb|ACD24469.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 159
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI-KD-ED 131
+ I +I+VGK + ++ +DEY +L YCK+ +LQ P N + I KD E
Sbjct: 1 MNITIISVGKLKEKYLKHAIDEYSKRLSRYCKLNILELQDEQTPDNASEKDELIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ LD G + SE++++ + + G G S + F IGG G + +R
Sbjct: 61 NKILNSIKDNMYVITLDLKGKMMSSEELSKFIDNCGVRGNSNLCFVIGGSLGLSEAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N S+ S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 SNHSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158
>gi|206901101|ref|YP_002251019.1| hypothetical protein DICTH_1190 [Dictyoglomus thermophilum H-6-12]
gi|238056570|sp|B5YER1.1|RLMH_DICT6 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|206740204|gb|ACI19262.1| conserved protein [Dictyoglomus thermophilum H-6-12]
Length = 153
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I++I +GK R+ ++ V+EY+ +L + ++ ++ + + A +K+E++ + N+
Sbjct: 3 IKIIVIGKIRNEFIKAGVNEYLKRLLPFINIK-IEFLPSFSELSEKIALLKEEEIILKNL 61
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ ++++ LD++G I SE+ ++ + + S+I+F IGG YG K+++ +N +
Sbjct: 62 -RNGEFIITLDKDGEKISSEEFSKKLFKLPISQNSQITFIIGGIYGVSEKIKQSSNFILS 120
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LSSM H+ ALL+L+EQ+YR+ I + + YH+
Sbjct: 121 LSSMTFTHEFALLILLEQIYRALKIQRNEPYHY 153
>gi|153937948|ref|YP_001392923.1| rRNA large subunit methyltransferase [Clostridium botulinum F str.
Langeland]
gi|384463882|ref|YP_005676477.1| hypothetical protein CBF_3757 [Clostridium botulinum F str. 230613]
gi|166990903|sp|A7GJG3.1|RLMH_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|152933844|gb|ABS39342.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum F
str. Langeland]
gi|295320899|gb|ADG01277.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum F
str. 230613]
Length = 159
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKD-E 130
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N +K + IKD E
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDN-ASLKEENIIKDKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I + +V+ LD G I SE+ + L+ + TG S I+F IGG G ++
Sbjct: 60 GNLILKHIKDNSFVIALDLKGKSITSEEFSGLIENCRLTGNSTIAFVIGGSLGLSEQVLS 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 120 RANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>gi|386716380|ref|YP_006182704.1| hypothetical protein HBHAL_5096 [Halobacillus halophilus DSM 2266]
gi|384075937|emb|CCG47433.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
Length = 159
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQIKD---- 129
+ I ++TVGK + ++ ++EY+ +L Y KV+ +++ P+N + AQ+++
Sbjct: 1 MKITIVTVGKLKEKYLKQGIEEYVKRLGPYAKVDIIEVSDEKAPENLSE--AQMEEVKQK 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +++ IS D +V+ L+ + SE++A M + G S+++F IGG G ++
Sbjct: 59 EGERILSKISQDAYVMTLEIEAKQLTSEKLASHMDSLATYGKSKVAFVIGGSLGLSDEVL 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R++ S+ S M HQ+ L+LVEQ+YR++ I+K + YH
Sbjct: 119 KRSDFSLSFSKMTFPHQLMRLMLVEQVYRAFKIMKNEPYH 158
>gi|298386368|ref|ZP_06995924.1| SPOUT methyltransferase superfamily protein [Bacteroides sp.
1_1_14]
gi|298260745|gb|EFI03613.1| SPOUT methyltransferase superfamily protein [Bacteroides sp.
1_1_14]
Length = 157
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNIISSDDWVVMLDENGL 152
+++YI + K + D+++ KNT + + Q + E ++ + D +V+LDE+G
Sbjct: 20 INDYIQRTKRFITF-DMEVIPELKNTKSLSMEQQKEKEGELILKALQPGDVIVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + A+ M +T R+ F IGGPYG K+ + AN I +S M +HQ+ L+
Sbjct: 79 EMRSLEFADYMKRKMNTVNKRLVFIIGGPYGFSEKVYQVANEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|296111039|ref|YP_003621420.1| hypothetical protein LKI_04545 [Leuconostoc kimchii IMSNU 11154]
gi|339491742|ref|YP_004706247.1| rRNA large subunit methyltransferase [Leuconostoc sp. C2]
gi|295832570|gb|ADG40451.1| hypothetical protein LKI_04545 [Leuconostoc kimchii IMSNU 11154]
gi|338853414|gb|AEJ31624.1| rRNA large subunit methyltransferase [Leuconostoc sp. C2]
Length = 159
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EY +L + K+ ++L P+ D + Q + E
Sbjct: 1 MNIKLITVGKLKENYLRAGIAEYTKRLSRFAKINMIELADEKTPEKASDAQNQQIMSKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I + D+V++L G + SE ++ M D G S I+F IGG G P +++R
Sbjct: 61 QRIQEKIGTRDFVIVLAIEGQQLASEDFSKKMTDITVDGYSDITFIIGGSLGLDPMIKQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|423416630|ref|ZP_17393719.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG3X2-1]
gi|401110014|gb|EJQ17930.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG3X2-1]
Length = 159
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAASLDRLATYGKSKITFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|227537992|ref|ZP_03968041.1| SPOUT methyltransferase superfamily protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227242068|gb|EEI92083.1| SPOUT methyltransferase superfamily protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 157
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I VGK + +++Y G+LK+Y + DL+ N KN +AQ K++
Sbjct: 1 MKITLICVGKTDEKYLNEGIEKYTGRLKHYITFGMVIIPDLK---NSKNMS--QAQQKEK 55
Query: 131 DMA-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
+ A ++ IS D VV+LDE G + S + + + F IGGPYG +
Sbjct: 56 EAALILKHISPQDTVVLLDEYGKEYRSVDFSRYLEKNMLNSTQHLVFVIGGPYGFDQTIY 115
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+R+ I LS M +HQ+ L VEQ+YR+++ILKG+ YHH
Sbjct: 116 DRSVQKISLSKMTFSHQMIRLFFVEQVYRAFSILKGEPYHH 156
>gi|168183649|ref|ZP_02618313.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
botulinum Bf]
gi|237797030|ref|YP_002864582.1| rRNA large subunit methyltransferase [Clostridium botulinum Ba4
str. 657]
gi|259491702|sp|C3KWC5.1|RLMH_CLOB6 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|182673220|gb|EDT85181.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
botulinum Bf]
gi|229261649|gb|ACQ52682.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum Ba4
str. 657]
Length = 159
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM--- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEV---PDEKTPDNASLKEENIIKE 57
Query: 133 ----AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G ++
Sbjct: 58 KEGTLILKHIKDNSFVIALDLKGKSIASEEFSDLIENCRLTGNSTIAFVIGGSLGLSEQV 117
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + S M HQ+ ++L+EQ+YR++ IL + YH
Sbjct: 118 LSRANYRLSFSKMTFPHQLFRVMLLEQVYRAFRILCREPYH 158
>gi|357014556|ref|ZP_09079555.1| RlmH [Paenibacillus elgii B69]
Length = 159
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-EDMA 133
I++ITVGK + + + EY+ +L Y KV+ +++ ++ + +AQ++ E
Sbjct: 3 IQMITVGKLKENYLVQGIAEYVKRLGPYAKVQIVEVPDEKAPESMSAAEEAQVRQREGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + +D ++V L +G + SE++A + D + G S ++F IGG G P++ RA+
Sbjct: 63 ILAKLHADAYIVALAIDGKPLSSEELARQVQDLATYGRSHVAFVIGGSLGLAPEVLARAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + M L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 LKLSFGRMTLPHQLMRLVLVEQVYRAFKIMRGEPYH 158
>gi|317123145|ref|YP_004103148.1| hypothetical protein [Thermaerobacter marianensis DSM 12885]
gi|315593125|gb|ADU52421.1| protein of unknown function DUF163 [Thermaerobacter marianensis DSM
12885]
Length = 161
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK----NTGDVKAQIKDEDMA 133
I ++ VG ++ +EY +L Y +V ++ P + G+V ++ E
Sbjct: 5 IELLAVGDLDQPALRRAAEEYERRLGRYARVSQRRVPGEPVPARLSQGEVTRVLEAEGRR 64
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +S D + V LD G + SE +AE + G R++F IGGP G P + +RA
Sbjct: 65 LLAALSPDAYAVALDRRGRTLTSEDVAEWLNQRMVAGDGRLAFLIGGPLGLAPAVLDRAR 124
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + HQ+ ++L+EQLYR++ IL+G+ YH+
Sbjct: 125 ERWSLSHLTFPHQMVPVILLEQLYRAFRILRGEPYHY 161
>gi|291461464|dbj|BAI83346.1| staphylococcal cassette chromosome attachment site [Macrococcus
caseolyticus]
Length = 159
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL----RSNPKNTGDVKAQIKDED 131
+ I ++TVGK + ++ VDEY+ +L Y K+E +++ S+ + D++ + E
Sbjct: 1 MKITIVTVGKLKEKYWKMAVDEYVKRLGAYSKIELIEVADEKDSDNMSEKDIEIAKRKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D +V L+ G + S Q+++ M +TG S ++F IGG G + +R
Sbjct: 61 ERILSKVKDDSFVYTLEILGKQLDSVQLSKEMEQKMNTGKSHLTFIIGGSNGLHQSVMDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR + I+KGQ+YH
Sbjct: 121 SNYALSFSKMTFPHQMMKVILLEQVYRGFRIMKGQSYH 158
>gi|197303381|ref|ZP_03168420.1| hypothetical protein RUMLAC_02103 [Ruminococcus lactaris ATCC
29176]
gi|197297379|gb|EDY31940.1| rRNA large subunit m3Psi methyltransferase RlmH [Ruminococcus
lactaris ATCC 29176]
Length = 159
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-----E 130
+ I +ITVGK + ++ + EY +L YCK+E +++ ++ K ++D E
Sbjct: 1 MKITIITVGKIKEKYLRDAIAEYSKRLSRYCKLEIIEV-ADEKTVEHASEAVEDSIRSKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ + D +V+ L+ NG + SEQ+A + G G S + F IGG G G ++
Sbjct: 60 AERILKYVKEDAYVITLEINGEQLTSEQLAAKVEQLGIQGTSHLVFIIGGSIGLGKEVLG 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ ++ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 120 KSDYALSFSKMTFPHQLMRVILLEQIYRSYRIINGEPYH 158
>gi|298373548|ref|ZP_06983537.1| alpha/beta knot family protein [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274600|gb|EFI16152.1| alpha/beta knot family protein [Bacteroidetes oral taxon 274 str.
F0058]
Length = 153
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ I ++ VGK V ++D+YI ++K +++ N K +K Q +E ++
Sbjct: 1 MKITLVFVGKTVQPEVSSLMDDYISRIK--GTDVSVKIVPNLKKKYPIKIQKTEEGREIL 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ DD+VV+LD+ G S + A + + + I F +GG YG +M +RA+
Sbjct: 59 KTVDKDDYVVLLDDKGKVFSSLEFASWL-EKRQIHSRSIVFVVGGAYGFSQEMYQRADFK 117
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS+M +HQI + EQLYR+++I+KG YHH
Sbjct: 118 LSLSAMTFSHQIIRAIFAEQLYRAFSIIKGLPYHH 152
>gi|317151991|ref|YP_004120039.1| hypothetical protein Daes_0266 [Desulfovibrio aespoeensis Aspo-2]
gi|316942242|gb|ADU61293.1| protein of unknown function DUF163 [Desulfovibrio aespoeensis
Aspo-2]
Length = 156
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I I VG+ + Q D Y KL + K+++ ++ P V+ K E A++
Sbjct: 4 IGFIWVGRLKEPFSQDGCDHYWKKLSRFFKLDEAVIKDGPGKLPPVERSRK-EGEAILAR 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
++ D V+LDE+G + S Q+A + R F IGGP+G ++ A +SI+
Sbjct: 63 LAPGDVAVILDEHGDRLTSRQLAAFVEKWTDAPNQRPVFVIGGPFGLSDAVKGVARVSIR 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M L H++A LVL+EQLYR+ TI+K YHH
Sbjct: 123 LSDMTLPHELARLVLLEQLYRAATIMKNMPYHH 155
>gi|229331968|ref|YP_039449.2| rRNA large subunit methyltransferase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|88970771|sp|Q6HAH7.2|RLMH_BACHK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 159
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRSFRINRGEPYH 158
>gi|387880556|ref|YP_006310859.1| SPOUT methyltransferase superfamily protein [Streptococcus
parasanguinis FW213]
gi|386794004|gb|AFJ27039.1| SPOUT methyltransferase superfamily protein [Streptococcus
parasanguinis FW213]
Length = 159
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EYI +L + KVE ++L P ++ Q ++ E
Sbjct: 1 MKIKLITVGKLKEKYLKDGIAEYIKRLGRFAKVEQVELVDEKTPDRASQLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS ++V++L G SE+ ++ + ++G S ++F IGG G P++++R
Sbjct: 61 ERILAKISDKEYVIVLAIEGKQFPSEKFSQTIDQIMTSGYSNLTFVIGGSLGLSPEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 GNLLMSFGQLTLPHQLMKLVLVEQIYRAFMIQQGSPYH 158
>gi|225567917|ref|ZP_03776942.1| hypothetical protein CLOHYLEM_03990 [Clostridium hylemonae DSM
15053]
gi|225163205|gb|EEG75824.1| hypothetical protein CLOHYLEM_03990 [Clostridium hylemonae DSM
15053]
Length = 174
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 73 KRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGD-VKAQIKD 129
K + I ++ VGK + + V+E+ +L YC+++ ++Q P N GD ++ QIK
Sbjct: 13 KEKMNITILAVGKVKESFYRQAVEEFKKRLSRYCRLQIVEVQDEKTPDNAGDALERQIKA 72
Query: 130 EDMA-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ A + I D+VV L+ G S +A+ + G G S I F IGG G +
Sbjct: 73 KEAARLQKYIKDTDYVVTLEIEGQQPDSVALADKLQRLGVDGTSSIVFAIGGSLGLHEDI 132
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+N + S+M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 133 TKRSNYRLSFSNMTFPHQMMRVILLEQIYRSYRIINGEPYH 173
>gi|148266138|ref|YP_001232844.1| hypothetical protein Gura_4128 [Geobacter uraniireducens Rf4]
gi|189040276|sp|A5G903.1|RLMH_GEOUR RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|146399638|gb|ABQ28271.1| protein of unknown function DUF163 [Geobacter uraniireducens Rf4]
Length = 153
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGK + V+ +DEY G+++ Y +E + + + +A + E ++
Sbjct: 1 MKMRVLWVGKTQEEWVRRGIDEYAGRIRRYTPLELAE--AKEEKGAAAEAMREREGERLV 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ + +++LDE G + S +A + G ++F IGG YG R A +
Sbjct: 59 KLLPRNARLILLDERGEQLSSPDLAGFIAANRDGGVQELAFAIGGAYGFSDSFRSMAYKT 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ + L+EQ+YR +TI+ G+ YHH
Sbjct: 119 IALSRMTFTHQMVRIFLLEQIYRGFTIINGEPYHH 153
>gi|229094570|ref|ZP_04225637.1| hypothetical protein bcere0021_52730 [Bacillus cereus Rock3-42]
gi|228688817|gb|EEL42648.1| hypothetical protein bcere0021_52730 [Bacillus cereus Rock3-42]
Length = 167
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 11 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 70
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 71 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 130
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 131 ESLSFSKMTLPHQLMRLVLLEQVYRSFRINRGEPYH 166
>gi|51246068|ref|YP_065952.1| hypothetical protein DP2216 [Desulfotalea psychrophila LSv54]
gi|61217573|sp|Q6AL30.1|RLMH_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|50877105|emb|CAG36945.1| hypothetical protein DP2216 [Desulfotalea psychrophila LSv54]
Length = 153
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNII 138
++ +GK + + V+EY+ +L++Y KVE L+ K G + + ++ ++ + N+
Sbjct: 4 EILLLGKIKDSFIAEGVEEYLKRLQHYTKVELRYLKGKGKK-GALLSTEQEGELLLANV- 61
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
++ +VV LD G ++ SE +AE + + +TG + + IGGP G P + RA++ +
Sbjct: 62 PANAFVVALDVQGKNLSSEGLAEQVINWENTGTRSVCYLIGGPLGLSPSLLARADLRLSF 121
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S M H + L+LVEQLYR++TI G+ YH
Sbjct: 122 SKMTFTHDMVRLLLVEQLYRAYTIKAGEKYH 152
>gi|417850331|ref|ZP_12496240.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK1080]
gi|339452726|gb|EGP65348.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK1080]
Length = 159
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGISEYSKRISRFAKLEMIELADEKTPDRASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTFSSEEFSKQLEEASIKGFSILTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
ANIS+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANISVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|418965934|ref|ZP_13517690.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
constellatus subsp. constellatus SK53]
gi|383341185|gb|EID19451.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
constellatus subsp. constellatus SK53]
Length = 159
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +LK++ K E ++L P +K Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYAKRLKHFTKFELIELSDEKTPDKASHLKNQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++++ D G S I+F IGG G +++R
Sbjct: 61 NRILSKITDKEFVIALAIEGQQFPSEEFSKILSDITIRGISNITFVIGGSLGLSNTVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|307711213|ref|ZP_07647635.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617175|gb|EFN96353.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 159
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY+ ++ + K+E ++L P + + Q + E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYLKRISRFAKLEMIELADEKTPDRASESENQKILGIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGRTFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|291461497|dbj|BAI83378.1| staphylococcal cassette chromosome attachment site [Macrococcus
caseolyticus]
Length = 159
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL----RSNPKNTGDVKAQIKDED 131
+ I +ITVGK + ++ VDEY+ +L Y K+E +++ S+ + D++ + E
Sbjct: 1 MKITIITVGKLKEKYWKMAVDEYVKRLGAYTKLELVEVADEKDSDNMSEKDIEIAKRKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D +V L+ G + S Q+++ M +TG S ++F IGG G + +R
Sbjct: 61 ERILSKVKDDSFVYTLEILGKQLDSVQLSKEMEQKMNTGKSHLTFIIGGSNGLHQSVMDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR + I+KGQ+YH
Sbjct: 121 SNYALSFSKMTFPHQMMKVILLEQVYRGFRIMKGQSYH 158
>gi|194016369|ref|ZP_03054983.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|194011842|gb|EDW21410.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 159
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I +ITVGK + ++ + EY +L+ Y K+E ++L P+N D +I KD E
Sbjct: 1 MNISIITVGKLKEKYLKQGIAEYTKRLQAYAKIEIIELADEKAPENLSDQDMKIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D V+ L G SE++A+ + + G S++ F IGG G + +R
Sbjct: 61 ERILSKINPDAHVIALAIEGKMKSSEELADTIDKLATYGKSKVCFVIGGSLGLSDAVMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 121 ANEKLSFSRMTFPHQLMRLVLVEQIYRAFRIVRGEPYH 158
>gi|291562683|emb|CBL41499.1| conserved hypothetical protein TIGR00246 [butyrate-producing
bacterium SS3/4]
Length = 159
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD---VKAQIKD-ED 131
+ + +ITVGK + Q + EY +L YCK+E +Q+ G V+ QIK+ E
Sbjct: 1 MKVTLITVGKIKEKFFQDAIAEYSKRLSRYCKLEIVQVADEKTPDGASEAVETQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +VV L NG + SE++A + G +G S+I F IGG G ++ R
Sbjct: 61 ERILSNIKDGSFVVALAINGNMLDSEELAAKIEKWGVSGISQIVFIIGGSLGLSNQVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 ADYKLSFSKMTFPHQLMRVILLEQIYRSYRIIQGEPYH 158
>gi|423613603|ref|ZP_17589463.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD107]
gi|401241668|gb|EJR48055.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD107]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAASLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|442318268|ref|YP_007358289.1| hypothetical protein MYSTI_01257 [Myxococcus stipitatus DSM 14675]
gi|441485910|gb|AGC42605.1| hypothetical protein MYSTI_01257 [Myxococcus stipitatus DSM 14675]
Length = 119
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 121 GDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180
GD KA E A+++ DWVV LDE G + S +++ +G A TGA + F IGG
Sbjct: 14 GDAKAS---EAEAILSRRKPQDWVVALDERGSLLDSVELSRYVGKA-QTGAKDLLFVIGG 69
Query: 181 PYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
G +R+ AN+++ LS M L H++A +VLVEQLYR++TILKG+ YH
Sbjct: 70 DEGLDASVRDAANLTLSLSKMTLPHRLARVVLVEQLYRAFTILKGEPYH 118
>gi|418968281|ref|ZP_13519899.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK616]
gi|383340665|gb|EID18957.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK616]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G + SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTLSSEEFSKQLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|452992150|emb|CCQ96468.1| conserved hypothetical protein [Clostridium ultunense Esp]
Length = 163
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS---NPKNTGDVKAQIKD-ED 131
L I ++ VGK + +Q+ ++EY +L Y +E +++ + + + + Q+KD E
Sbjct: 5 LHIHIVAVGKIKEKFLQMGIEEYKKRLTSYAGLEITEVKEEQVSEELSAKEEEQVKDREG 64
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + SD+ VV L G SE++A+ + DA + G SRI+F IGG G K+ R
Sbjct: 65 ERILAHLRSDERVVSLAIPGKPFSSEELAKYLDDAATYGRSRIAFIIGGSLGLSGKVLAR 124
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ + S M HQ+ L+L+EQLYR+ I +G+ YH
Sbjct: 125 SDLLLSFSKMTFPHQLMRLILLEQLYRACKINRGEPYH 162
>gi|251783561|ref|YP_002997866.1| rRNA large subunit methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|386318026|ref|YP_006014190.1| rRNA large subunit methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|408402621|ref|YP_006860585.1| SPOUT methyl transferase superfamily protein [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410495974|ref|YP_006905820.1| hypothetical protein SDSE_2285 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417753014|ref|ZP_12401168.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|417927464|ref|ZP_12570852.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|242392193|dbj|BAH82652.1| SPOUT methyltransferase superfamily protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|323128313|gb|ADX25610.1| rRNA large subunit methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|333771002|gb|EGL47972.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|340765338|gb|EGR87864.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|407968850|dbj|BAM62088.1| SPOUT methyl transferase superfamily protein [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410441134|emb|CCI63762.1| UPF0247 protein CPE2600 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L P D + Q+ E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERTPDKASDAENQMIMAKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+VV+L G SE ++L+ + G S I+F IGG G P++++R
Sbjct: 61 QRIEKKIGQRDFVVVLAIEGKQFPSETFSQLISETTVKGYSDITFIIGGSLGLDPRIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANVLMSFGLLTLPHQLMRLVLIEQIYRAFMIAQGSPYH 158
>gi|377832556|ref|ZP_09815514.1| alpha/beta knot family protein [Lactobacillus mucosae LM1]
gi|377553748|gb|EHT15469.1| alpha/beta knot family protein [Lactobacillus mucosae LM1]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA---- 133
I++I VGK + + + EY +L YCK E +++ +A++ DE MA
Sbjct: 3 IKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEM-DEVMAKEGE 61
Query: 134 -VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ I ++V L NG + SE+ A+++ + G S I+F IGG G P + +RA
Sbjct: 62 RILSKIKDREYVFALAINGKERSSEEFAQMLNQLATYGHSDITFVIGGSLGLSPAVLKRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 122 NEQISFGRFTLPHQLMRLVLTEQIYRAFTIINGLPYH 158
>gi|358465169|ref|ZP_09175120.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
oral taxon 058 str. F0407]
gi|357065927|gb|EHI76097.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
oral taxon 058 str. F0407]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + VE ++L P + + ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFATVEIIELADEKTPDKASESENHKILEVEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+VV+L G + SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 NRILSKVGERDFVVVLAIEGKTLSSEEFSKQLEQASIKGFSTLTFIIGGSLGLSPAVKHR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YRS+TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRSFTIQQGFPYH 158
>gi|440782597|ref|ZP_20960614.1| rRNA large subunit methyltransferase [Clostridium pasteurianum DSM
525]
gi|440220121|gb|ELP59330.1| rRNA large subunit methyltransferase [Clostridium pasteurianum DSM
525]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI--KDED 131
+ I +ITVGK + ++ + EY +L YCK++ +LQ P N +I E
Sbjct: 1 MNITLITVGKIKEKYLREAIAEYKKRLSRYCKLDIIELQDEKTPDNASAKDEEIIKNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + VV LD G + SE+++ + D G G S I+F IGG G + R
Sbjct: 61 QLILKYIKDNMHVVALDLKGKMLSSEELSGFIKDLGVKGESNIAFLIGGSLGLSESVLNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ANYRLCFSKMTFPHQLFRVMLLEQIYRGFRIMKGEPYH 158
>gi|322386435|ref|ZP_08060064.1| alpha/beta knot family protein [Streptococcus cristatus ATCC 51100]
gi|417921560|ref|ZP_12565051.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
cristatus ATCC 51100]
gi|321269521|gb|EFX52452.1| alpha/beta knot family protein [Streptococcus cristatus ATCC 51100]
gi|342834243|gb|EGU68518.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
cristatus ATCC 51100]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +L + K+E ++L P +++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYAKRLSRFSKLEIVELADEKTPDKASELENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +S ++VV L G SE+ + ++ D G S I+F IGG G P +++R
Sbjct: 61 SRILAKVSEREFVVALAIEGKQFPSEEFSSILSDITVRGFSDITFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|327402718|ref|YP_004343556.1| Ribosomal RNA large subunit methyltransferase H [Fluviicola
taffensis DSM 16823]
gi|327318226|gb|AEA42718.1| Ribosomal RNA large subunit methyltransferase H [Fluviicola
taffensis DSM 16823]
Length = 157
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ + ++ +GK ++ EY+ +L +Y + +Q+ + K + + QIK E
Sbjct: 1 MQVTLLCIGKTGKKFLEDGEQEYLKRLGHYLSFQ-MQVIPDIKQAKSLSETQIKQKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I D +++LDE G + S + ++ + D + G ++ F IGGPYG + +RAN
Sbjct: 60 ILDKIGVSDTLILLDERGKEFSSMEFSQYLQDQFNRGGKQLYFVIGGPYGFSDSVYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQ+YR+ TILK + YHH
Sbjct: 120 GKISLSQMTFSHQMIRLFFIEQVYRAMTILKNEPYHH 156
>gi|451343879|ref|ZP_21912945.1| rRNA large subunit m3Psi methyltransferase RlmH [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449337454|gb|EMD16616.1| rRNA large subunit m3Psi methyltransferase RlmH [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 160
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 5/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I++I VGK + ++ ++EY +L YCK V D ++ NP + + + K+
Sbjct: 1 MTIKLICVGKIKEKYLKAGIEEYQKRLSAYCKLKIIEVADEKIPDNPSLSQQIMIKNKEG 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+ + I + D+++++D S Q +E++ + G S I F IGG GH ++
Sbjct: 61 EKILKYIKDNKDYMILMDVKSKTYDSVQFSEMIENQMINGYSTIVFVIGGSLGHSEELYH 120
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA I + +S M HQ+ L+LVEQ+YRS+ I+ + YH
Sbjct: 121 RAQIKVSVSPMTFPHQLFRLMLVEQIYRSFKIINHETYH 159
>gi|29346972|ref|NP_810475.1| rRNA large subunit methyltransferase [Bacteroides thetaiotaomicron
VPI-5482]
gi|32171812|sp|Q8A7G2.1|RLMH_BACTN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|29338870|gb|AAO76669.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 157
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVK--AQIKDEDMAVMNIISSDDWVVMLDENGL 152
+++YI + K + D+++ KNT + Q + E ++ + D +V+LDE+G
Sbjct: 20 INDYIQRTKRFITF-DMEVIPELKNTKSLSMDQQKEKEGELILKALQPGDVIVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + A+ M +T R+ F IGGPYG K+ + AN I +S M +HQ+ L+
Sbjct: 79 EMRSLEFADYMKRKMNTVNKRLVFVIGGPYGFSEKVYQVANEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>gi|340399892|ref|YP_004728917.1| hypothetical protein SALIVB_2154 [Streptococcus salivarius CCHSS3]
gi|338743885|emb|CCB94395.1| uncharacterized conserved protein [Streptococcus salivarius CCHSS3]
Length = 167
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN + + +++ITVGK + ++ + EY+ +L + K E ++L P N +
Sbjct: 3 MCYN--KPMKVKLITVGKLKEKYLKDGIAEYVKRLGRFTKFESIELTDEKTPDNASEAEN 60
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 61 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
P +++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 LSPTVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 166
>gi|167758259|ref|ZP_02430386.1| hypothetical protein CLOSCI_00597 [Clostridium scindens ATCC 35704]
gi|167664156|gb|EDS08286.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
scindens ATCC 35704]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-----E 130
+ I ++TVGK + ++ + EY +L YCK+E +++ ++ K + A ++D E
Sbjct: 1 MRITLVTVGKIKERYLKDAIAEYSKRLGKYCKLEIIEV-ADEKTPENASATVEDMIRQKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D +VV L +G + SE++AE + G G S I+F IGG G ++
Sbjct: 60 GERILKYIKEDAYVVALAIDGQMLSSEKLAEKIKLLGIQGTSHIAFIIGGSIGLSQEVLS 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 120 RAHYQLSFSKMTFPHQLMRVILLEQVYRSYRIITGEPYH 158
>gi|223557995|gb|ACM91001.1| conserved hypothetical protein [uncultured bacterium URE4]
Length = 157
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAV 134
+ ++++TVG+ V+ +D Y+ +LK+Y +++ + + QIK+ E +
Sbjct: 1 MDVKLVTVGRTDVQWVKDGLDLYVSRLKHYVPFSVVEIPQLKNVSAFSQEQIKEKEGELI 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ ++ D V++LDE G + S + A+ + + G + F IGG YG ++ +RA
Sbjct: 61 LKQVAPGDAVILLDERGKEYRSVEWADWIRQRLARGGKSLVFVIGGAYGFSQRVYDRAEG 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ V EQLYR++TI+KG+ YHH
Sbjct: 121 LVSLSRMTFSHQMVRTVFAEQLYRAFTIIKGEPYHH 156
>gi|320547708|ref|ZP_08041993.1| alpha/beta knot family protein [Streptococcus equinus ATCC 9812]
gi|320447783|gb|EFW88541.1| alpha/beta knot family protein [Streptococcus equinus ATCC 9812]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I VGK + ++ + EY ++ + K E ++L P N D + Q ++ E
Sbjct: 1 MKVKIIAVGKLKEKYLKDGISEYGKRMSRFAKFEIIELPDEKTPDNASDAQNQQIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D+V++L G SE+ ++++ DA G S I F IGG G K+++R
Sbjct: 61 ERILGKISDRDYVIVLAIEGKQFPSEEFSKIIADATLRGYSDIVFVIGGSLGLADKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGLLTLPHQLMRLVLSEQIYRAFMIQQGSPYH 158
>gi|309799265|ref|ZP_07693513.1| conserved hypothetical protein [Streptococcus infantis SK1302]
gi|308117110|gb|EFO54538.1| conserved hypothetical protein [Streptococcus infantis SK1302]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + +E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFANLEMIELADEKTPDRASESENQKILELEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+VV+L G SE+ ++ + A G S I+F IGG G P++++R
Sbjct: 61 NRILAKVGERDFVVVLAIEGTTFSSEEFSKQLERASINGFSTITFIIGGSLGLSPEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR+++I +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFSIQQGSPYH 158
>gi|307705904|ref|ZP_07642742.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307620565|gb|EFN99663.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ ++ D+V+ L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVADRDFVIALAIEGKAFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLSSAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|295110100|emb|CBL24053.1| conserved hypothetical protein TIGR00246 [Ruminococcus obeum
A2-162]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ IR++TVGK + + + EY +L YCK+ Q+ P D + QIK+ E
Sbjct: 1 MEIRIVTVGKIKEKYLNDGIAEYAKRLSRYCKLTFCQVPDEKTPDKASDALNEQIKNTEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M I D+V+ L +G + S +++E + G G S I+F IGG G G ++ R
Sbjct: 61 QRLMKQIREQDYVIALALDGKMLDSVELSEKISHLGVEGKSSIAFVIGGSLGLGEEVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 121 ADYKLSFSKMTFPHQLMQMILLEQIYRSYRIMNNEPYH 158
>gi|255530567|ref|YP_003090939.1| hypothetical protein Phep_0655 [Pedobacter heparinus DSM 2366]
gi|255343551|gb|ACU02877.1| protein of unknown function DUF163 [Pedobacter heparinus DSM 2366]
Length = 157
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I ++ VGK + +++Y+ +LK+Y + + N KN + + + K+ ++
Sbjct: 1 MKITLLVVGKTEDKYLVEGIEKYLSRLKHYIGFNLVVIPELKNTKNLTEAQQKSKEAEL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +S+ D V++LDE G S + + + F IGGPYG + RAN
Sbjct: 60 ILKQVSNLDSVILLDEKGKKYTSVSFSNYLNKQMIGSVQHLVFMIGGPYGFDESIYRRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
S+ LS M +HQ+ L VEQLYR+++ILKG+ YHH
Sbjct: 120 GSMSLSDMTFSHQMVRLFFVEQLYRAFSILKGEPYHH 156
>gi|158321795|ref|YP_001514302.1| rRNA large subunit methyltransferase [Alkaliphilus oremlandii
OhILAs]
gi|166988610|sp|A8MKH4.1|RLMH_ALKOO RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|158141994|gb|ABW20306.1| protein of unknown function DUF163 [Alkaliphilus oremlandii OhILAs]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I+VGK + ++L +DEYI +L Y K+ +++ P+N + QI E
Sbjct: 3 ITIISVGKLKEKYLKLGIDEYIKRLTRYAKLNIIEIPDEKAPENLSSAEEQIVKNKEGEG 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +V+ LD G + SE++A+ + G G S I+F IGG G + +RA+
Sbjct: 63 ILKNIKDGMYVIALDLKGKMLSSEELADKLQSLGVAGNSNIAFIIGGSLGLSEDVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR I+KG+ YH
Sbjct: 123 YKLCFSPMTFPHQLMKLILLEQIYRGLRIIKGEPYH 158
>gi|322377908|ref|ZP_08052396.1| putative SPOUT methyltransferase superfamily [Streptococcus sp.
M334]
gi|321281084|gb|EFX58096.1| putative SPOUT methyltransferase superfamily [Streptococcus sp.
M334]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDRASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLSSSVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|229193710|ref|ZP_04320651.1| hypothetical protein bcere0002_53530 [Bacillus cereus ATCC 10876]
gi|228589735|gb|EEK47613.1| hypothetical protein bcere0002_53530 [Bacillus cereus ATCC 10876]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L +G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIDGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|288927745|ref|ZP_06421592.1| methyltransferase superfamily protein [Prevotella sp. oral taxon
317 str. F0108]
gi|288330579|gb|EFC69163.1| methyltransferase superfamily protein [Prevotella sp. oral taxon
317 str. F0108]
Length = 156
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 118 KNTGDVKA--QIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
KNT ++ A Q + E ++ + DD +V+LDE+G ++ S + A+ + + A R+
Sbjct: 42 KNTKNISANQQKEAEGELILKKLQPDDHLVLLDEHGKELRSIEFAQWL-ERKQHVARRLV 100
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F +GGPYG + RAN I LS M +HQ+ L+ EQLYR+ TILKG+ YHH
Sbjct: 101 FAVGGPYGFSEAVYARANEKISLSKMTFSHQMVRLIFTEQLYRACTILKGEPYHH 155
>gi|282881890|ref|ZP_06290541.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptoniphilus
lacrimalis 315-B]
gi|281298299|gb|EFA90744.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptoniphilus
lacrimalis 315-B]
Length = 159
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR--SNPKNTGDVKAQI--KDED 131
+ I +I+VGK + + +DEY +LK YC+V ++L+ S KN D I E
Sbjct: 1 MEINIISVGKIKEDFFKKAIDEYEKRLKAYCRVNFIELKDESEGKNLSDKDIDIILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I ++++LD G I S + ++ + D G S I F IGG G +++++
Sbjct: 61 KRILEKIKERSFIIVLDIKGRSIDSVEFSKKINDIMLDGISSIDFIIGGSLGISQEVKDK 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN S+ S H++ ++L+EQ+YR++TI+ + YH
Sbjct: 121 ANYSLSFSKFTFPHKLMKVILMEQIYRAFTIINNKTYH 158
>gi|322421674|ref|YP_004200897.1| hypothetical protein GM18_4207 [Geobacter sp. M18]
gi|320128061|gb|ADW15621.1| protein of unknown function DUF163 [Geobacter sp. M18]
Length = 154
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++++ VGK + V+ ++EY G+++ Y +E L+ R + + E +A
Sbjct: 1 MRLKLLWVGKTQESWVRTGIEEYAGRVRRYLPLEILEAREEKGAQAQAMRERECERLA-- 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ +V+LDE G + S + A + G + F IGG YG R+ A +
Sbjct: 59 KLLPKGGRLVLLDERGEQMSSTEFASFLSRNRDQGTQDLVFAIGGAYGFTDSFRKEAFKA 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M L HQ+ + L+EQ+YR +TI+ G+ YHH
Sbjct: 119 ISLSRMTLTHQMVRVFLLEQIYRGFTIMNGEPYHH 153
>gi|313886246|ref|ZP_07819975.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas asaccharolytica PR426713P-I]
gi|332299841|ref|YP_004441762.1| ribosomal RNA large subunit methyltransferase H [Porphyromonas
asaccharolytica DSM 20707]
gi|312924317|gb|EFR35097.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas asaccharolytica PR426713P-I]
gi|332176904|gb|AEE12594.1| Ribosomal RNA large subunit methyltransferase H [Porphyromonas
asaccharolytica DSM 20707]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK---NTGDVKAQIKDEDMAVMN 136
++ VG+ S + +++EY ++ Y D+++ +PK + Q + A+ +
Sbjct: 5 LLVVGETSSPELHRLIEEYRQRIGGYIPF-DIEVLPDPKRRKQQASIANQQQATCEAIAS 63
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER-ANIS 195
+I+ D VV+LDE G + S Q AE + ++GA R+ +GGPYG P+ ++ +
Sbjct: 64 VIAPSDLVVLLDERGKEYTSRQWAEQLQRYMNSGAKRLLLVVGGPYGFTPEFKQHYGQQA 123
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + L H++ L VEQ+YR+ TIL+G+ YHH
Sbjct: 124 WSLSRLTLTHEMVRLFAVEQIYRACTILRGEPYHH 158
>gi|145423875|gb|ABP68573.1| OrfX [Staphylococcus sciuri]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQIKDEDMA 133
+ I +ITVGK + + VDEY +L Y K E +++ P N D +I E A
Sbjct: 1 MKITIITVGKLKEKYWKQAVDEYNKRLGAYTKTELIEVADEKAPDNMSDKDIEIVKEKEA 60
Query: 134 --VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M+ I D +V+ L+ G + SE +++ + + + G S I+F IGG G K+ +R
Sbjct: 61 DRIMSKIKQDSYVITLEIQGKMLTSEGLSKEIDNLMTRGNSHITFIIGGSNGLHQKVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSKMTFPHQMMKVILMEQVYRAFKIMRGEAYH 158
>gi|226227001|ref|YP_002761107.1| hypothetical protein GAU_1595 [Gemmatimonas aurantiaca T-27]
gi|259491710|sp|C1A8S7.1|RLMH_GEMAT RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|226090192|dbj|BAH38637.1| hypothetical protein GAU_1595 [Gemmatimonas aurantiaca T-27]
Length = 154
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+ ++ +G+ R G+ + +Y G+ +Y ++ ++++ P + E ++
Sbjct: 3 VALLVIGRPRHAGLADAIRDYEGRAAHYWPLDVIEVKEEPGRNLSADVVREREAERLVAR 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ +D VV D G+ + S Q A + + + A ++F IGG +G GP +RERAN +
Sbjct: 63 LPADAVVVACDPGGVTMDSAQFARWLQEQRES-ARNVAFVIGGAHGLGPAVRERANRRLS 121
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L+ L H++A +V+ EQLYR+ TI++G+ YH
Sbjct: 122 LAPWTLPHEVARMVMAEQLYRAGTIIRGEPYH 153
>gi|387928277|ref|ZP_10130955.1| rRNA large subunit methyltransferase [Bacillus methanolicus PB1]
gi|387587863|gb|EIJ80185.1| rRNA large subunit methyltransferase [Bacillus methanolicus PB1]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I ++TVGK + ++ +DEY+ +L Y K+E +++ P+ + + Q+K E
Sbjct: 3 ISIVTVGKLKEKYLKQGIDEYLKRLSSYAKLEVIEVPDEKAPEILSETEMEQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D +++ L G SE++A+ + + G S+I+F IGG G ++ +RAN
Sbjct: 63 ILAKISPDTYIIALAIQGKMKSSEELADSLDKLATYGKSKIAFVIGGSLGLSNEIMKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I++G+ YH
Sbjct: 123 EQLSFSKMTFPHQLMRLILVEQIYRAFRIIRGEPYH 158
>gi|336421705|ref|ZP_08601861.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 5_1_57FAA]
gi|336000176|gb|EGN30329.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 5_1_57FAA]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-----E 130
+ I ++TVGK + ++ + EY +L YCK+E +++ ++ K + A ++D E
Sbjct: 1 MRITLVTVGKIKEKYLKDAIAEYSKRLGKYCKLEIIEV-ADEKTPENASATVEDMIRQKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D +VV L +G + SE++AE + G G S I+F IGG G ++
Sbjct: 60 GERILKYIKEDAYVVALAIDGQMLSSEKLAEKIKLLGIQGTSHIAFIIGGSIGLSQEVLS 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 120 RAHYQLSFSKMTFPHQLMRVILLEQVYRSYRIITGEPYH 158
>gi|307707893|ref|ZP_07644370.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|307616153|gb|EFN95349.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|49332022|gb|AAT62668.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 182
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 26 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 85
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 86 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 145
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 146 ESLSFSKMTLPHQLMRLVLLEQVYRSFRINRGEPYH 181
>gi|291087408|ref|ZP_06346385.2| alpha/beta knot family protein [Clostridium sp. M62/1]
gi|291075081|gb|EFE12445.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium sp.
M62/1]
Length = 152
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 83 VGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-EDMAVMNII 138
+GK + + + EY +L YCK+E +Q+ P G V+ QIKD E +++ I
Sbjct: 1 MGKIKERFFEAAISEYAKRLSRYCKLEIVQVADEKTPDRAGAAVEEQIKDREGERILSHI 60
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+V+ L G + SE++AE + G G S + F IGG G ++ +RA+ ++
Sbjct: 61 KDGAYVIALAIEGKMLDSEELAEKIDRLGINGVSHVQFVIGGSLGLSERVMKRADFALSF 120
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S M HQ+ +VL+EQ+YRS+ I++G YH
Sbjct: 121 SKMTFPHQLMRVVLLEQIYRSYRIIEGAPYH 151
>gi|304382286|ref|ZP_07364793.1| alpha/beta knot family protein [Prevotella marshii DSM 16973]
gi|304336643|gb|EFM02872.1| alpha/beta knot family protein [Prevotella marshii DSM 16973]
Length = 157
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
+I VGK + + +++Y ++ +Y E + L KNT + Q + E ++
Sbjct: 6 LIVVGKTVNQHLVAGIEDYAQRIAHYMPFEVITL-PELKNTKSLSEQQQKEKEGEQILKT 64
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G S A+ + + R++F IGGPYG + +RAN I
Sbjct: 65 ILPTDTVVLLDEHGTMFRSIDFAKWI-EKKQGFCKRLAFVIGGPYGFSSSVYDRANEKIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ LV EQLYR+ TI+KG+ YHH
Sbjct: 124 LSKMTFSHQMVRLVFTEQLYRACTIIKGEPYHH 156
>gi|414082173|ref|YP_006990870.1| ribosomal RNA large subunit methyltransferase H [Carnobacterium
maltaromaticum LMA28]
gi|412995746|emb|CCO09555.1| ribosomal RNA large subunit methyltransferase H [Carnobacterium
maltaromaticum LMA28]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I++ITVGK + +++ +DEY +L YCK+E +++ P+ + + Q+K+ E
Sbjct: 3 IKIITVGKLKEKYLKMGIDEYTKRLGAYCKIELIEVPDEKAPEKLSEAEMLQVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + +V L G SE+ ++ + G G S + F IGG G + +R+N
Sbjct: 63 ILAKIPENAYVFALAIEGKQRTSEEFSKEIEQLGIQGKSNLVFVIGGSLGLSQAVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I M L HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 123 TPISFGKMTLPHQLMRLVLVEQVYRGFRIMKGEPYH 158
>gi|392530793|ref|ZP_10277930.1| rRNA large subunit methyltransferase [Carnobacterium maltaromaticum
ATCC 35586]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I++ITVGK + +++ +DEY +L YCK+E +++ P+ + + Q+K+ E
Sbjct: 3 IKIITVGKLKEKYLKMGIDEYTKRLGAYCKIELIEVPDEKAPEKLSEAEMLQVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + +V L G SE+ ++ + G G S + F IGG G + +R+N
Sbjct: 63 ILAKIPENAYVFALAIEGKQRTSEEFSKEIEQLGIQGKSNLVFVIGGSLGLSQAVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I M L HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 123 TPISFGKMTLPHQLMRLVLVEQVYRGFRIMKGEPYH 158
>gi|419767444|ref|ZP_14293599.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK579]
gi|383353184|gb|EID30809.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK579]
Length = 159
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDRASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V+ L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIALAIEGKTFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+SI + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSISFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|421276465|ref|ZP_15727287.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SPAR10]
gi|395876941|gb|EJG88012.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SPAR10]
Length = 159
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + VE ++L P D + + + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYSKRISRFAAVEMIELADEKTPDRASDSENEKILNLEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++VV+L G + SE+ ++ + A G S ++F IGG G P++++R
Sbjct: 61 NRILSKIGDREFVVVLAIEGKTLSSEEFSKQLEQASINGFSTLTFVIGGSLGLSPQVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSLSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|228968608|ref|ZP_04129593.1| hypothetical protein bthur0004_53800 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228791100|gb|EEM38717.1| hypothetical protein bthur0004_53800 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 162
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 6 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 65
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 66 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 125
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 126 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 161
>gi|418018876|ref|ZP_12658431.1| rRNA large subunit methyltransferase [Streptococcus salivarius M18]
gi|345526318|gb|EGX29630.1| rRNA large subunit methyltransferase [Streptococcus salivarius M18]
Length = 159
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EY+ +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYVKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G P +++R
Sbjct: 61 QRILAKVGERDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPTVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|319945985|ref|ZP_08020234.1| alpha/beta knot family protein [Streptococcus australis ATCC
700641]
gi|417919203|ref|ZP_12562740.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
australis ATCC 700641]
gi|319747793|gb|EFW00038.1| alpha/beta knot family protein [Streptococcus australis ATCC
700641]
gi|342834333|gb|EGU68607.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
australis ATCC 700641]
Length = 161
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +L + KVE ++L P D++ Q ++ E
Sbjct: 3 MKIKIVTVGKLKEKYLKDGIAEYTKRLSRFTKVEMVELLDEKTPDRASDLENQQILEKEG 62
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + ++V+ L G SE+ ++++ + G S I+F IGG G P +++R
Sbjct: 63 NRILAKVGDREYVIALAIEGQQFPSEKFSQILEEVTVRGYSEITFVIGGSLGLSPAVKKR 122
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 123 ANLLMSFGKLTLPHQLMKLVLIEQIYRAFMIQQGSPYH 160
>gi|410582469|ref|ZP_11319575.1| hypothetical protein ThesuDRAFT_00504 [Thermaerobacter subterraneus
DSM 13965]
gi|410505289|gb|EKP94798.1| hypothetical protein ThesuDRAFT_00504 [Thermaerobacter subterraneus
DSM 13965]
Length = 159
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP----KNTGDVKAQIKDEDMA 133
I ++ VG+ ++ +EY +L+ Y +V ++ P + G+V+ ++ E
Sbjct: 3 IELLAVGELDQPALRRAAEEYARRLERYARVHQRRVPGEPIPARRTQGEVQRVLEAEGRR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + + V LD G + SE +A + G SR+ F IGGP G P++ ERA
Sbjct: 63 LLAALDPGSYAVALDRRGRMLTSEDVAGWLNQRMVEGDSRLVFIIGGPLGLPPQVLERAR 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + HQ+ ++L+EQLYR++ IL+G+ YH+
Sbjct: 123 ERWSLSHLTFPHQMVPVILLEQLYRAFRILRGEPYHY 159
>gi|228924203|ref|ZP_04087474.1| hypothetical protein bthur0011_51740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835421|gb|EEM80791.1| hypothetical protein bthur0011_51740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 161
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 5 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 64
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 65 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 124
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 125 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 160
>gi|228994178|ref|ZP_04154078.1| hypothetical protein bpmyx0001_49010 [Bacillus pseudomycoides DSM
12442]
gi|229000247|ref|ZP_04159816.1| hypothetical protein bmyco0003_48000 [Bacillus mycoides Rock3-17]
gi|228759579|gb|EEM08556.1| hypothetical protein bmyco0003_48000 [Bacillus mycoides Rock3-17]
gi|228765630|gb|EEM14284.1| hypothetical protein bpmyx0001_49010 [Bacillus pseudomycoides DSM
12442]
Length = 159
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAANLDRLATYGKSKVAFIIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|442586830|ref|ZP_21005653.1| SpoT methyltransferase superfamily protein [Elizabethkingia
anophelis R26]
gi|442563408|gb|ELR80620.1| SpoT methyltransferase superfamily protein [Elizabethkingia
anophelis R26]
Length = 157
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMA 133
+ I +I +GK ++ ++ YI +L + E +++ N KN D++ + K+E
Sbjct: 1 MRISLICIGKTDDAEIKKLIAYYIPRLPKHFNFEFIEIPDVKNAKNLTDIQLK-KEEAKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+N + + D VV+LDE G S + A + + + ++F +GG YG ++ RA
Sbjct: 60 FLNYLDNTDTVVLLDEKGKQFTSREFASKIDNWMNMSTRHLAFLVGGAYGFSEEIYSRAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ L VEQ+YR+ TIL+G+ YH+
Sbjct: 120 EKISLSKMTFTHQMIRLFFVEQIYRASTILQGKPYHN 156
>gi|228911298|ref|ZP_04075102.1| hypothetical protein bthur0013_54360 [Bacillus thuringiensis IBL
200]
gi|228848316|gb|EEM93166.1| hypothetical protein bthur0013_54360 [Bacillus thuringiensis IBL
200]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E
Sbjct: 1 MNISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELSDEKAPENLSEAEMLIVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ +++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R
Sbjct: 61 IRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 121 SNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|150004911|ref|YP_001299655.1| rRNA large subunit methyltransferase [Bacteroides vulgatus ATCC
8482]
gi|166987450|sp|A6L2W9.1|RLMH_BACV8 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|149933335|gb|ABR40033.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 157
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ ++ VG+ +++Y+ + K++ D+++ KNT ++ + Q + E
Sbjct: 1 MKFTLLVVGRTVEKHYITAINDYVERTKHFISF-DMEVIPELKNTKNLSMEQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D VV+LDE+G + S + A + T R+ F IGGPYG PK+ + A
Sbjct: 60 ILKALLPGDVVVLLDEHGKEFRSVEFANWIERKMHTVNKRLVFIIGGPYGFAPKIYDAAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ VEQLYR+ TIL YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFVEQLYRAMTILNNGPYHH 156
>gi|423388254|ref|ZP_17365480.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG1X1-3]
gi|401643442|gb|EJS61139.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG1X1-3]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVTFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|418976900|ref|ZP_13524739.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK575]
gi|383350627|gb|EID28490.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK575]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K++ ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLKMIELADEKTPDRASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G + SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTLSSEEFSKRLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YRS+TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRSFTIQQGSPYH 158
>gi|355672482|ref|ZP_09058412.1| ribosomal RNA large subunit methyltransferase H [Clostridium
citroniae WAL-17108]
gi|354815183|gb|EHE99779.1| ribosomal RNA large subunit methyltransferase H [Clostridium
citroniae WAL-17108]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I ++TVGK + + + EY +L YCK+E +Q+ P G+ ++ QIK+ E
Sbjct: 1 MKITLVTVGKIKERYFEDAIKEYSKRLSRYCKLEIIQVADEKTPDGAGEALEKQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +V+ L G + SE++A + G G S+I F IGG G + +R
Sbjct: 61 QRILSNIKDGAYVIALAIEGRMLSSEELALRLQKLGVDGTSQIVFVIGGSLGLSEAVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ ++ S M HQ+ +VL+EQ+YRS+ I+ G+ YH
Sbjct: 121 ADYALSFSKMTFPHQLMRVVLLEQIYRSYRIIGGEPYH 158
>gi|387760318|ref|YP_006067295.1| hypothetical protein Ssal_00004 [Streptococcus salivarius 57.I]
gi|387785126|ref|YP_006071209.1| hypothetical protein SALIVA_2084 [Streptococcus salivarius JIM8777]
gi|338746008|emb|CCB96374.1| uncharacterized conserved protein [Streptococcus salivarius
JIM8777]
gi|339291085|gb|AEJ52432.1| conserved hypothetical protein [Streptococcus salivarius 57.I]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EY+ +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYVKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G P +++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPTVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|225390633|ref|ZP_03760357.1| hypothetical protein CLOSTASPAR_04388 [Clostridium asparagiforme
DSM 15981]
gi|225043318|gb|EEG53564.1| hypothetical protein CLOSTASPAR_04388 [Clostridium asparagiforme
DSM 15981]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I +ITVGK + + + EY +L YCK+E +Q+ P G+ ++AQI++ E
Sbjct: 1 MKITLITVGKIKERYFEDAIKEYSKRLSRYCKLEIIQVADEKTPDGAGEALEAQIREKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + +V+ L G + S +++E + G G S+++F IGG G P + R
Sbjct: 61 QRILAQVKDGAYVIALAIEGKMLDSVELSETIARLGVEGKSQVAFVIGGSLGLSPAVMAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ ++ S M HQ+ ++L+EQ+YR + I G+ YH
Sbjct: 121 ADYALSFSRMTFPHQLMRVILLEQIYRGFRIAAGEPYH 158
>gi|167636249|ref|ZP_02394552.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0442]
gi|206975898|ref|ZP_03236809.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217962952|ref|YP_002341530.1| rRNA large subunit methyltransferase [Bacillus cereus AH187]
gi|218906651|ref|YP_002454485.1| rRNA large subunit methyltransferase [Bacillus cereus AH820]
gi|225867440|ref|YP_002752818.1| conserved hypothetical protein TIGR00246 [Bacillus cereus 03BB102]
gi|229035118|ref|ZP_04189064.1| hypothetical protein bcere0028_51430 [Bacillus cereus AH1271]
gi|229159019|ref|ZP_04287075.1| hypothetical protein bcere0010_51900 [Bacillus cereus ATCC 4342]
gi|229603200|ref|YP_002869668.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
A0248]
gi|376269375|ref|YP_005122087.1| 50S m3Psi1915 methyltransferase RlmH [Bacillus cereus F837/76]
gi|167528364|gb|EDR91135.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0442]
gi|206745992|gb|EDZ57388.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217067032|gb|ACJ81282.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|218540117|gb|ACK92515.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|225785893|gb|ACO26110.1| conserved hypothetical protein TIGR00246 [Bacillus cereus 03BB102]
gi|228624438|gb|EEK81209.1| hypothetical protein bcere0010_51900 [Bacillus cereus ATCC 4342]
gi|228728184|gb|EEL79214.1| hypothetical protein bcere0028_51430 [Bacillus cereus AH1271]
gi|229267608|gb|ACQ49245.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0248]
gi|364515175|gb|AEW58574.1| LSU m3Psi1915 methyltransferase RlmH [Bacillus cereus F837/76]
Length = 167
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 11 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 70
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 71 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 130
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 131 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 166
>gi|408489825|ref|YP_006866194.1| large subunit ribosome methyltransferase, RlmH/YbeA-like protein
[Psychroflexus torquis ATCC 700755]
gi|408467100|gb|AFU67444.1| large subunit ribosome methyltransferase, RlmH/YbeA-like protein
[Psychroflexus torquis ATCC 700755]
Length = 157
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I ++ VGK + +Q + EY +L ++ KV+ + KN D+ Q + E
Sbjct: 1 MTITLLLVGKTDNAQLQNLAAEYQNRLSHFVNYKVDVIPDLKKTKNM-DIALQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS+ D++V+LD+ G + S + ++ + ++G ++ F +GGPYG + +R N
Sbjct: 60 ILKKISTSDFLVLLDDKGAEFTSLKFSDWIQKRMNSGLKQLVFVVGGPYGFSEAVYKRVN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L EQLYR+++IL YHH
Sbjct: 120 QKVSLSKMTFSHQMIRLFFTEQLYRAFSILNNLPYHH 156
>gi|238917149|ref|YP_002930666.1| rRNA large subunit methyltransferase [Eubacterium eligens ATCC
27750]
gi|259491708|sp|C4Z0V6.1|RLMH_EUBE2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|238872509|gb|ACR72219.1| hypothetical protein EUBELI_01221 [Eubacterium eligens ATCC 27750]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-KAQIKD-ED 131
+ I V+ VGK + VDEY +L YCK++ ++L P N DV QIK+ E
Sbjct: 1 MRITVVCVGKIKEKFYTQAVDEYSKRLSRYCKLDIVELPDEKTPDNASDVVNEQIKNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D +V L G + S +++E + G G S I+F IGG G + +R
Sbjct: 61 ERILSAIKDDAYVCALAIEGKMLDSVELSEKIDRLGIDGTSNITFVIGGSLGLADAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLSFSKMTFPHQLMRVILLEQIYRAYRIMKNEPYH 158
>gi|165872506|ref|ZP_02217139.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0488]
gi|167641420|ref|ZP_02399670.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0193]
gi|170689189|ref|ZP_02880386.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0465]
gi|177651917|ref|ZP_02934500.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0174]
gi|190568885|ref|ZP_03021787.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
Tsiankovskii-I]
gi|196036081|ref|ZP_03103481.1| conserved hypothetical protein TIGR00246 [Bacillus cereus W]
gi|196041977|ref|ZP_03109264.1| conserved hypothetical protein TIGR00246 [Bacillus cereus
NVH0597-99]
gi|196045518|ref|ZP_03112749.1| conserved hypothetical protein TIGR00246 [Bacillus cereus 03BB108]
gi|206970252|ref|ZP_03231205.1| conserved hypothetical protein TIGR00246 [Bacillus cereus AH1134]
gi|218231131|ref|YP_002370234.1| rRNA large subunit methyltransferase [Bacillus cereus B4264]
gi|218900600|ref|YP_002449011.1| rRNA large subunit methyltransferase [Bacillus cereus G9842]
gi|227818228|ref|YP_002818237.1| rRNA large subunit methyltransferase [Bacillus anthracis str. CDC
684]
gi|228905403|ref|ZP_04069358.1| hypothetical protein bthur0014_64680 [Bacillus thuringiensis IBL
4222]
gi|228942608|ref|ZP_04105140.1| hypothetical protein bthur0008_52350 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228955710|ref|ZP_04117705.1| hypothetical protein bthur0006_50580 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228961722|ref|ZP_04123326.1| hypothetical protein bthur0005_51600 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228975538|ref|ZP_04136090.1| hypothetical protein bthur0003_52820 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228982174|ref|ZP_04142463.1| hypothetical protein bthur0002_53280 [Bacillus thuringiensis Bt407]
gi|229072924|ref|ZP_04206120.1| hypothetical protein bcere0025_50840 [Bacillus cereus F65185]
gi|229077350|ref|NP_847854.2| rRNA large subunit methyltransferase [Bacillus anthracis str. Ames]
gi|229153617|ref|ZP_04281794.1| hypothetical protein bcere0011_51460 [Bacillus cereus m1550]
gi|229181705|ref|ZP_04309028.1| hypothetical protein bcere0005_50440 [Bacillus cereus 172560W]
gi|229220841|ref|YP_031549.2| rRNA large subunit methyltransferase [Bacillus anthracis str.
Sterne]
gi|229220843|ref|YP_022394.2| rRNA large subunit methyltransferase [Bacillus anthracis str. 'Ames
Ancestor']
gi|229347000|ref|YP_086724.2| rRNA large subunit methyltransferase [Bacillus cereus E33L]
gi|229576694|ref|YP_897638.2| rRNA large subunit methyltransferase [Bacillus thuringiensis str.
Al Hakam]
gi|254687100|ref|ZP_05150958.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
CNEVA-9066]
gi|254724117|ref|ZP_05185902.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
A1055]
gi|254733562|ref|ZP_05191283.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
Western North America USA6153]
gi|254742157|ref|ZP_05199844.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
Kruger B]
gi|254755933|ref|ZP_05207965.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
Vollum]
gi|254761645|ref|ZP_05213665.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
Australia 94]
gi|300118841|ref|ZP_07056561.1| rRNA large subunit methyltransferase [Bacillus cereus SJ1]
gi|365162582|ref|ZP_09358710.1| ribosomal RNA large subunit methyltransferase H [Bacillus sp.
7_6_55CFAA_CT2]
gi|384183326|ref|YP_005569088.1| rRNA large subunit methyltransferase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|384189548|ref|YP_005575444.1| SPOUT methyltransferase superfamily [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402554437|ref|YP_006595708.1| rRNA large subunit methyltransferase [Bacillus cereus FRI-35]
gi|402562932|ref|YP_006605656.1| rRNA large subunit methyltransferase [Bacillus thuringiensis
HD-771]
gi|410677873|ref|YP_006930244.1| ribosomal RNA large subunit methyltransferase H [Bacillus
thuringiensis Bt407]
gi|421508109|ref|ZP_15955025.1| rRNA large subunit methyltransferase [Bacillus anthracis str. UR-1]
gi|421640456|ref|ZP_16081039.1| rRNA large subunit methyltransferase [Bacillus anthracis str. BF1]
gi|423355942|ref|ZP_17333566.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
IS075]
gi|423362698|ref|ZP_17340198.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD022]
gi|423374971|ref|ZP_17352308.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
AND1407]
gi|423376749|ref|ZP_17354033.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG1O-2]
gi|423386941|ref|ZP_17364196.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG1X1-2]
gi|423394342|ref|ZP_17371543.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG2X1-1]
gi|423399704|ref|ZP_17376877.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG2X1-2]
gi|423410307|ref|ZP_17387454.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG2X1-3]
gi|423410799|ref|ZP_17387919.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG3O-2]
gi|423427545|ref|ZP_17404576.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG3X2-2]
gi|423433416|ref|ZP_17410420.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG4O-1]
gi|423438857|ref|ZP_17415838.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG4X12-1]
gi|423439844|ref|ZP_17416750.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG4X2-1]
gi|423449995|ref|ZP_17426874.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG5O-1]
gi|423462915|ref|ZP_17439683.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6O-1]
gi|423479606|ref|ZP_17456321.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6X1-1]
gi|423506652|ref|ZP_17483241.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HD73]
gi|423526727|ref|ZP_17503172.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB1-1]
gi|423532272|ref|ZP_17508690.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB2-9]
gi|423542458|ref|ZP_17518848.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB4-10]
gi|423548689|ref|ZP_17525047.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB5-5]
gi|423554090|ref|ZP_17530416.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
ISP3191]
gi|423565650|ref|ZP_17541925.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MSX-A1]
gi|423571351|ref|ZP_17547594.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MSX-A12]
gi|423572881|ref|ZP_17549000.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MSX-D12]
gi|423583628|ref|ZP_17559739.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD014]
gi|423608199|ref|ZP_17584091.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD102]
gi|423618841|ref|ZP_17594674.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD115]
gi|423621504|ref|ZP_17597282.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD148]
gi|423632774|ref|ZP_17608519.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD154]
gi|423633693|ref|ZP_17609346.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD156]
gi|434378619|ref|YP_006613263.1| rRNA large subunit methyltransferase [Bacillus thuringiensis
HD-789]
gi|449092533|ref|YP_007424974.1| putative cytosolic protein [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452201969|ref|YP_007482050.1| LSU m3Psi1915 methyltransferase RlmH [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|32171774|sp|P59730.1|RLMH_BACAN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|77416701|sp|Q630E3.2|RLMH_BACCZ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|226734656|sp|B7IS03.1|RLMH_BACC2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|226734657|sp|B7HGB9.1|RLMH_BACC4 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|229470421|sp|A0RLN8.2|RLMH_BACAH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807105|sp|C3LGR6.1|RLMH_BACAC RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|164711729|gb|EDR17273.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0488]
gi|167510595|gb|EDR85991.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0193]
gi|170666832|gb|EDT17598.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0465]
gi|172082621|gb|EDT67685.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0174]
gi|190559952|gb|EDV13935.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
Tsiankovskii-I]
gi|195991248|gb|EDX55216.1| conserved hypothetical protein TIGR00246 [Bacillus cereus W]
gi|196023725|gb|EDX62401.1| conserved hypothetical protein TIGR00246 [Bacillus cereus 03BB108]
gi|196027232|gb|EDX65852.1| conserved hypothetical protein TIGR00246 [Bacillus cereus
NVH0597-99]
gi|206734829|gb|EDZ51998.1| conserved hypothetical protein TIGR00246 [Bacillus cereus AH1134]
gi|218159088|gb|ACK59080.1| conserved hypothetical protein TIGR00246 [Bacillus cereus B4264]
gi|218545548|gb|ACK97942.1| conserved hypothetical protein TIGR00246 [Bacillus cereus G9842]
gi|227006908|gb|ACP16651.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
CDC 684]
gi|228601738|gb|EEK59236.1| hypothetical protein bcere0005_50440 [Bacillus cereus 172560W]
gi|228629846|gb|EEK86498.1| hypothetical protein bcere0011_51460 [Bacillus cereus m1550]
gi|228710170|gb|EEL62148.1| hypothetical protein bcere0025_50840 [Bacillus cereus F65185]
gi|228777526|gb|EEM25804.1| hypothetical protein bthur0002_53280 [Bacillus thuringiensis Bt407]
gi|228784148|gb|EEM32175.1| hypothetical protein bthur0003_52820 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228797957|gb|EEM44966.1| hypothetical protein bthur0005_51600 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228803938|gb|EEM50562.1| hypothetical protein bthur0006_50580 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228817034|gb|EEM63127.1| hypothetical protein bthur0008_52350 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228854223|gb|EEM98926.1| hypothetical protein bthur0014_64680 [Bacillus thuringiensis IBL
4222]
gi|269850226|gb|AAP29340.2| rRNA large subunit m3Psi methyltransferase RlmH [Bacillus anthracis
str. Ames]
gi|298723809|gb|EFI64531.1| rRNA large subunit methyltransferase [Bacillus cereus SJ1]
gi|324329410|gb|ADY24670.1| rRNA large subunit methyltransferase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|326943257|gb|AEA19153.1| SPOUT methyltransferase superfamily [Bacillus thuringiensis serovar
chinensis CT-43]
gi|363618115|gb|EHL69471.1| ribosomal RNA large subunit methyltransferase H [Bacillus sp.
7_6_55CFAA_CT2]
gi|401076972|gb|EJP85317.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD022]
gi|401080889|gb|EJP89171.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
IS075]
gi|401093187|gb|EJQ01302.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
AND1407]
gi|401108884|gb|EJQ16814.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG3X2-2]
gi|401109531|gb|EJQ17454.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG3O-2]
gi|401111834|gb|EJQ19716.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG4O-1]
gi|401115984|gb|EJQ23830.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG4X12-1]
gi|401127293|gb|EJQ35020.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG5O-1]
gi|401168705|gb|EJQ75964.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB4-10]
gi|401174806|gb|EJQ82013.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB5-5]
gi|401181523|gb|EJQ88671.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
ISP3191]
gi|401193332|gb|EJR00338.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MSX-A1]
gi|401201172|gb|EJR08048.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MSX-A12]
gi|401209688|gb|EJR16447.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD014]
gi|401216350|gb|EJR23062.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MSX-D12]
gi|401238208|gb|EJR44649.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD102]
gi|401252317|gb|EJR58578.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD115]
gi|401259420|gb|EJR65596.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD154]
gi|401263259|gb|EJR69388.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD148]
gi|401282760|gb|EJR88658.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD156]
gi|401630793|gb|EJS48591.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG1X1-2]
gi|401640994|gb|EJS58719.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG1O-2]
gi|401648304|gb|EJS65900.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG2X1-3]
gi|401657825|gb|EJS75330.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG2X1-2]
gi|401658713|gb|EJS76203.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG2X1-1]
gi|401791584|gb|AFQ17623.1| rRNA large subunit methyltransferase [Bacillus thuringiensis
HD-771]
gi|401795647|gb|AFQ09506.1| rRNA large subunit methyltransferase [Bacillus cereus FRI-35]
gi|401821912|gb|EJT21066.1| rRNA large subunit methyltransferase [Bacillus anthracis str. UR-1]
gi|401877176|gb|AFQ29343.1| rRNA large subunit methyltransferase [Bacillus thuringiensis
HD-789]
gi|402421476|gb|EJV53729.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG4X2-1]
gi|402422724|gb|EJV54952.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6O-1]
gi|402425201|gb|EJV57356.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6X1-1]
gi|402447317|gb|EJV79173.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HD73]
gi|402454599|gb|EJV86389.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB1-1]
gi|402465133|gb|EJV96817.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuB2-9]
gi|403392409|gb|EJY89662.1| rRNA large subunit methyltransferase [Bacillus anthracis str. BF1]
gi|409177002|gb|AFV21307.1| ribosomal RNA large subunit methyltransferase H [Bacillus
thuringiensis Bt407]
gi|449026290|gb|AGE81453.1| putative cytosolic protein [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452107362|gb|AGG04302.1| LSU m3Psi1915 methyltransferase RlmH [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|289168911|ref|YP_003447180.1| hypothetical protein smi_2087 [Streptococcus mitis B6]
gi|288908478|emb|CBJ23320.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDRASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V++L G + SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRTLSKVGDRDFVIVLAIEGKTLASEEFSKQLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|281418735|ref|ZP_06249754.1| protein of unknown function DUF163 [Clostridium thermocellum JW20]
gi|281407819|gb|EFB38078.1| protein of unknown function DUF163 [Clostridium thermocellum JW20]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I +I VGK + ++ ++EY +L YCK+E +++ P N ++ Q K E
Sbjct: 1 MRITIIAVGKIKEKYLKEGINEYSKRLSRYCKLEIIEVEDEHAPDNLSSLEEQQVKKREA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
V+ + +V+LD G + SE++A + +G S ++F IGG G ++
Sbjct: 61 ERVVKRLKEGTLLVVLDVRGSKMSSEELARKLESFFISGKSHVTFVIGGSLGIDKELLNM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S+ LS M HQ+ L+L+EQLYRS+ I+ G+ YH
Sbjct: 121 ADFSLSLSDMTFPHQLTRLILLEQLYRSFKIINGETYH 158
>gi|334147123|ref|YP_004510052.1| rRNA large subunit methyltransferase [Porphyromonas gingivalis
TDC60]
gi|333804279|dbj|BAK25486.1| rRNA large subunit methyltransferase [Porphyromonas gingivalis
TDC60]
Length = 157
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKD- 129
+ I ++ VGK S + +EYI +L +Y E D++L S + Q KD
Sbjct: 1 MKIVLLVVGKTDSKLMAQATEEYIRRLSHYVSFEVEVIPDVRLGSKLSS-----EQQKDA 55
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E ++ + D V+LDE G + S + + + TG R+ F IGGPYG P ++
Sbjct: 56 EGREILARLRPSDNTVLLDERGREYSSMEFSAFLQKKMLTGTRRMVFVIGGPYGFSPAVQ 115
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
E I LS M +HQ+ L EQ+YR+ TIL + YHH
Sbjct: 116 EAVTDRISLSRMTFSHQMIRLFFTEQVYRAMTILNHEPYHH 156
>gi|239906962|ref|YP_002953703.1| hypothetical protein DMR_23260 [Desulfovibrio magneticus RS-1]
gi|259491705|sp|C4XSX5.1|RLMH_DESMR RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|239796828|dbj|BAH75817.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 154
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
P+R+I VG+ R+ + Y+ ++ Y E++ R + D + +E AV+
Sbjct: 3 PLRLIAVGQVRTPYFREACAHYLTAVRRYLPAEEILARDG--KSADPARRKAEEAKAVLA 60
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
++ D+VV+LDE+G + S ++A L+ +F IGGP+G + +RA+ +
Sbjct: 61 ALAPRDFVVVLDEHGPSLPSTELAALLKKRIEDPGRAPAFVIGGPFGLDKAVLDRADRLL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L L H++A +VL EQLYR+ +I G YHH
Sbjct: 121 ALGPGTLPHELARVVLYEQLYRAASINAGAPYHH 154
>gi|39998298|ref|NP_954249.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|409913649|ref|YP_006892114.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|61217586|sp|Q747Q7.1|RLMH_GEOSL RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|39985244|gb|AAR36599.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase, putative
[Geobacter sulfurreducens PCA]
gi|298507234|gb|ADI85957.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase, putative
[Geobacter sulfurreducens KN400]
Length = 153
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGK + V+ +DEY G+++ Y +E + R + + E +
Sbjct: 1 MKLRVLWVGKTQEEWVRRGIDEYAGRVRRYAPLEIGEARDEKGAAAEAMRARECERLD-- 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ +++LDE G + S + A + T ++F IGG YG + R RA+
Sbjct: 59 KLVPRTSRLILLDERGDQLTSPEFAAYISRCRDTAVPELAFAIGGAYGFADEFRRRADRV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ +VL+EQ+YR++TI+ + YHH
Sbjct: 119 IALSRMTFTHQMVRVVLLEQIYRAFTIIGNEPYHH 153
>gi|228476810|ref|ZP_04061458.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|228251547|gb|EEK10684.1| conserved hypothetical protein [Streptococcus salivarius SK126]
Length = 167
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN + + +++ITVGK + ++ + EY+ +L + K E ++L P N +
Sbjct: 3 MCYN--KPMKVKLITVGKLKEKYLKDGIAEYVKRLGRFTKFESIELTDEKTPDNASESEN 60
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 61 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
P +++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 LSPTVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 166
>gi|330506654|ref|YP_004383082.1| hypothetical protein MCON_0405 [Methanosaeta concilii GP6]
gi|328927462|gb|AEB67264.1| hypothetical protein MCON_0405 [Methanosaeta concilii GP6]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD---EDMAV 134
+R+I VG+ R Q +YI +L+ Y +++ +++ + K A+I+ E A+
Sbjct: 3 LRIIAVGRLRESYWQDAAADYIRRLRPYARLDMVEVAISSKEAATPGAEIRAMEAEGAAI 62
Query: 135 MNIISSDDW-VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + V++LD G + S+Q+AE + D G S ++F IGGP G P + +RA+
Sbjct: 63 LDKLKRHSGPVIVLDRTGDALNSQQLAERLQDLILEGRSEVAFIIGGPLGLSPAVLDRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 123 LLLSFSPMTFPHQLMRVILLEQIYRSFRIMHHEPYH 158
>gi|229087944|ref|ZP_04220054.1| hypothetical protein bcere0022_44980 [Bacillus cereus Rock3-44]
gi|228695357|gb|EEL48232.1| hypothetical protein bcere0022_44980 [Bacillus cereus Rock3-44]
Length = 177
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 21 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 80
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 81 ILDKISDDTHVIALAIEGKQKSSEEFAANLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 140
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 141 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 176
>gi|148381509|ref|YP_001256050.1| rRNA large subunit methyltransferase [Clostridium botulinum A str.
ATCC 3502]
gi|153932839|ref|YP_001385884.1| rRNA large subunit methyltransferase [Clostridium botulinum A str.
ATCC 19397]
gi|153936438|ref|YP_001389291.1| rRNA large subunit methyltransferase [Clostridium botulinum A str.
Hall]
gi|166990858|sp|A5I7U4.1|RLMH_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|166990882|sp|A7FZD1.1|RLMH_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|148290993|emb|CAL85129.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152928883|gb|ABS34383.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum A
str. ATCC 19397]
gi|152932352|gb|ABS37851.1| conserved hypothetical protein TIGR00246 [Clostridium botulinum A
str. Hall]
Length = 159
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVADEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKSITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSQ 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL + YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCREPYH 158
>gi|229142208|ref|ZP_04270732.1| hypothetical protein bcere0013_52930 [Bacillus cereus BDRD-ST26]
gi|228641226|gb|EEK97533.1| hypothetical protein bcere0013_52930 [Bacillus cereus BDRD-ST26]
Length = 170
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 14 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 73
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 74 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 133
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 134 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 169
>gi|407797610|ref|ZP_11144529.1| hypothetical protein MJ3_11840 [Salimicrobium sp. MJ3]
gi|407018000|gb|EKE30753.1| hypothetical protein MJ3_11840 [Salimicrobium sp. MJ3]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ + VI+VGK + ++ +DEY +L Y K E +++ P+N + + + + E
Sbjct: 1 MKVSVISVGKLKEKYLKQGIDEYAKRLGPYAKTEIIEVADEKAPENLSEAEMEEVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D +V+ L+ G + SEQ+A + + G+S+I F IGG G +++ER
Sbjct: 61 ERILAKVPKDAYVITLEIEGKQLTSEQLASRFDNLMTYGSSKIVFIIGGSLGISSQVQER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ L+L+EQ+YR++ ILK + YH
Sbjct: 121 SDYALSFSKMTFPHQMMRLMLLEQVYRAFKILKNEPYH 158
>gi|30023485|ref|NP_835116.1| rRNA large subunit methyltransferase [Bacillus cereus ATCC 14579]
gi|229051128|ref|ZP_04194672.1| hypothetical protein bcere0027_50790 [Bacillus cereus AH676]
gi|229112872|ref|ZP_04242403.1| hypothetical protein bcere0018_51090 [Bacillus cereus Rock1-15]
gi|229130705|ref|ZP_04259658.1| hypothetical protein bcere0015_51360 [Bacillus cereus BDRD-Cer4]
gi|229148009|ref|ZP_04276348.1| hypothetical protein bcere0012_51300 [Bacillus cereus BDRD-ST24]
gi|423461761|ref|ZP_17438557.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG5X2-1]
gi|423589276|ref|ZP_17565362.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD045]
gi|423651297|ref|ZP_17626867.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD169]
gi|423658371|ref|ZP_17633670.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD200]
gi|32171775|sp|P59731.1|RLMH_BACCR RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|29899046|gb|AAP12317.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|228635434|gb|EEK91925.1| hypothetical protein bcere0012_51300 [Bacillus cereus BDRD-ST24]
gi|228652722|gb|EEL08607.1| hypothetical protein bcere0015_51360 [Bacillus cereus BDRD-Cer4]
gi|228670551|gb|EEL25864.1| hypothetical protein bcere0018_51090 [Bacillus cereus Rock1-15]
gi|228722191|gb|EEL73592.1| hypothetical protein bcere0027_50790 [Bacillus cereus AH676]
gi|401134994|gb|EJQ42600.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG5X2-1]
gi|401224515|gb|EJR31069.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD045]
gi|401279349|gb|EJR85278.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD169]
gi|401288101|gb|EJR93863.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD200]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAISLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|154502741|ref|ZP_02039801.1| hypothetical protein RUMGNA_00555 [Ruminococcus gnavus ATCC 29149]
gi|153796624|gb|EDN79044.1| rRNA large subunit m3Psi methyltransferase RlmH [Ruminococcus
gnavus ATCC 29149]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-----E 130
+ I +ITVGK + ++ + EY +L YCK++ +++ S+ K +++ E
Sbjct: 1 MKITLITVGKIKEKYLKDAIAEYSKRLSKYCKLDIIEV-SDEKTPDQASETVEEGIRSKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D +V+ L+ G + SE++AE + G G S I+F IGG G G ++ +
Sbjct: 60 GEKILRYIKDDMYVITLEIAGKMLTSEELAERIEKLGIQGKSSIAFVIGGSIGLGKEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R++ ++ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 120 RSDYALSFSKMTFPHQLMRVILLEQVYRSYRIMNGEPYH 158
>gi|423484518|ref|ZP_17461207.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6X1-2]
gi|423557027|ref|ZP_17533330.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MC67]
gi|401137979|gb|EJQ45554.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6X1-2]
gi|401193802|gb|EJR00804.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
MC67]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAASIDRLATYGKSKITFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|188994003|ref|YP_001928255.1| rRNA large subunit methyltransferase [Porphyromonas gingivalis ATCC
33277]
gi|238691456|sp|B2RH13.1|RLMH_PORG3 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|188593683|dbj|BAG32658.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 157
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKD- 129
+ I ++ VGK S + +EYI +L +Y E D++L S + Q KD
Sbjct: 1 MKIVLLVVGKTDSKLMAQATEEYIRRLSHYVSFEVEVIPDVRLGSKLSS-----EQQKDA 55
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E ++ + D V+LDE G + S + + + TG R+ F IGGPYG P ++
Sbjct: 56 EGREILARLRPSDSTVLLDERGREYSSMEFSAFLQKKMLTGTRRMVFVIGGPYGFSPAVQ 115
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
E I LS M +HQ+ L EQ+YR+ TIL + YHH
Sbjct: 116 EAVADRISLSRMTFSHQMIRLFFTEQVYRAMTILNHEPYHH 156
>gi|339451359|ref|ZP_08654729.1| rRNA large subunit methyltransferase [Leuconostoc lactis KCTC 3528]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I++ITVGK + ++ + EY +L + K ++L P + + Q + E
Sbjct: 3 IKIITVGKLKEDYLKAGIAEYTKRLSRFAKTTIIELADEKTPDKASEAQNQQILMKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I + D+V++L G SE A+ + D G S I+F IGG G P +++RAN
Sbjct: 63 IQEKIGARDFVIVLAIEGKQFPSEAFAQKLADVTLAGYSDITFIIGGSLGLDPTIKQRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 123 MKMSFGLLTLPHQLMRLVLVEQIYRTFMIQQGSPYH 158
>gi|332981876|ref|YP_004463317.1| hypothetical protein Mahau_1301 [Mahella australiensis 50-1 BON]
gi|332699554|gb|AEE96495.1| protein of unknown function DUF163 [Mahella australiensis 50-1 BON]
Length = 160
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPK--NTGDVKAQIKDEDMA 133
I V+ VGK R ++ +DEY+ +L+ YC++ +++ + P+ + DV++ E A
Sbjct: 4 INVVAVGKIRERYIRDAIDEYVKRLRPYCRLNIIEVAEQQAPQELSKADVESVKIKEGRA 63
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I S+++++ L G + SE++A + D +G S I+F IGG G ++ RA+
Sbjct: 64 ILEHIKSNEYIIALAIEGAMMSSERLAGYILDLMISGHSSITFIIGGSLGLSSEVLARAD 123
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ L+L+EQ+YR + I G+ YH
Sbjct: 124 MLLSFSPMTFPHQLMRLILLEQVYRCFKINSGEPYH 159
>gi|288925094|ref|ZP_06419030.1| methyltransferase superfamily protein [Prevotella buccae D17]
gi|288338284|gb|EFC76634.1| methyltransferase superfamily protein [Prevotella buccae D17]
Length = 156
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 116 NPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
N KN + + + ++ +M ++ + D VV+LDE+G++ S + A +G + A R+
Sbjct: 43 NTKNLSESQQKEREGEM-ILKFLQPSDTVVLLDEHGIEFRSLEFATWLGKKRNV-ARRLV 100
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F +GGPYG + +RA+ I LS M +HQ+ L+ EQ+YR+ TI+KG+ YHH
Sbjct: 101 FVVGGPYGFSSAVYDRADEKISLSRMTFSHQMIRLIFTEQIYRACTIIKGEPYHH 155
>gi|410669097|ref|YP_006921468.1| ribosomal RNA large subunit methyltransferase H [Thermacetogenium
phaeum DSM 12270]
gi|409106844|gb|AFV12969.1| ribosomal RNA large subunit methyltransferase H [Thermacetogenium
phaeum DSM 12270]
Length = 157
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP-KNTGDVKAQIKDEDMAVMN 136
++VI VG + +L +EY +L+ Y +V +++ P + +K+ + +
Sbjct: 4 LKVIAVGHLKEPFYRLAQEEYRKRLQRYARVTIIEVADEPVPEREKERTLVKEREGERLL 63
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+S+ V LD G + SE++A +G G I+F +GG G P + RA++S+
Sbjct: 64 QKASNCLCVALDPGGKALTSEELASWLGREMDAGRGEIAFFLGGTLGLSPSVLRRADLSL 123
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + HQ+A ++L+EQLYR++ IL+G+ YH+
Sbjct: 124 SLSRLTFPHQLARVILLEQLYRAFRILRGEPYHY 157
>gi|354807275|ref|ZP_09040747.1| ribosomal RNA large subunit methyltransferase H [Lactobacillus
curvatus CRL 705]
gi|354514249|gb|EHE86224.1| ribosomal RNA large subunit methyltransferase H [Lactobacillus
curvatus CRL 705]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKD-ED 131
+ I+VITVGK + ++ + EY +L +CK E +++ P++ D + +KD E
Sbjct: 1 MNIKVITVGKLKEKYLKAGIAEYAKRLSKFCKFEMIEVADEKAPESLSDAEMTNVKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + V++L G SE+ A+ + D + G S I+F IGG G + +R
Sbjct: 61 ERILNKIKDKEHVIVLAIQGKQRASEEFAKEIQDLATYGKSDITFVIGGSLGTSDAVNKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN ++ + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANDALSFGKLTLPHQLMRLVLTEQIYRAFMINQGSPYH 158
>gi|423644616|ref|ZP_17620233.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD166]
gi|401270248|gb|EJR76271.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD166]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I KD E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKDKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAISLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|228988686|ref|ZP_04148772.1| hypothetical protein bthur0001_53410 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228771137|gb|EEM19617.1| hypothetical protein bthur0001_53410 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 175
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 19 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 78
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 79 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 138
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 139 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 174
>gi|75761479|ref|ZP_00741444.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491040|gb|EAO54291.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 182
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 26 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 85
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 86 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 145
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 146 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 181
>gi|326693105|ref|ZP_08230110.1| rRNA large subunit methyltransferase [Leuconostoc argentinum KCTC
3773]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I++ITVGK + ++ + EY +L + K ++L P + + Q + E
Sbjct: 3 IKIITVGKLKEDYLKAGIAEYTKRLSRFAKTTIIELADEKTPDKASEAQNQQILMKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I + D+V++L G SE A+ + D G S I+F IGG G P +++RAN
Sbjct: 63 IQEKIGARDFVIVLAIEGKQFPSEAFAQKLADVTLAGYSDITFIIGGSLGLDPTIKQRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 123 MKMSFGLLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|299541803|ref|ZP_07052126.1| hypothetical protein BFZC1_22674 [Lysinibacillus fusiformis ZC1]
gi|424740085|ref|ZP_18168495.1| hypothetical protein C518_4317 [Lysinibacillus fusiformis ZB2]
gi|298725541|gb|EFI66182.1| hypothetical protein BFZC1_22674 [Lysinibacillus fusiformis ZC1]
gi|422946308|gb|EKU40721.1| hypothetical protein C518_4317 [Lysinibacillus fusiformis ZB2]
Length = 159
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +++VGK + +++ +DEY+ +L Y K++ +++ P+ + + I K E
Sbjct: 3 ITIVSVGKLKEKYLKMGIDEYVKRLGGYAKMDLVEVPDEKAPEQLSEAEMDIVKKKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D +V+ L NG SEQMA + + G S+I+F IGG G + +RA+
Sbjct: 63 ILTKISPDAYVIALAINGKMKTSEQMAADIESLMTYGKSKIAFVIGGSLGLHEDVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
M L HQ+ LVLVEQ+YRS+ I+KG+ YH
Sbjct: 123 EQQSFGKMTLPHQLMKLVLVEQIYRSFRIMKGEPYH 158
>gi|229007770|ref|ZP_04165359.1| hypothetical protein bmyco0002_46490 [Bacillus mycoides Rock1-4]
gi|228753488|gb|EEM02937.1| hypothetical protein bmyco0002_46490 [Bacillus mycoides Rock1-4]
Length = 179
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 23 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 82
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 83 ILDKISDDTHVIALAIEGKQKSSEEFAANLDRLATYGKSKVAFIIGGSLGLSSEVMKRSN 142
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 143 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 178
>gi|404485522|ref|ZP_11020719.1| ribosomal RNA large subunit methyltransferase H [Barnesiella
intestinihominis YIT 11860]
gi|404338210|gb|EJZ64657.1| ribosomal RNA large subunit methyltransferase H [Barnesiella
intestinihominis YIT 11860]
Length = 157
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 5/158 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL---QLRSNPKNTGDVKAQIKDEDM 132
+ I ++ VGK ++EY +L +Y E +LR N K+ + + ++ D
Sbjct: 1 MKIVLLVVGKTVESHFIQGIEEYSKRLAHYVPFEIAVIPELR-NTKSLSTDQQKEREADF 59
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + + D ++V+LDE+G + S Q A + S A R+ F IGGPYG ++ A
Sbjct: 60 ILKSFLPGD-YIVLLDEHGKEFTSTQFATYLEKKMSNVAKRLIFVIGGPYGFSQRIYNAA 118
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ EQLYR+ TIL + YHH
Sbjct: 119 QEKISLSKMTFSHQMIRLIFTEQLYRAMTILNNEPYHH 156
>gi|51894437|ref|YP_077128.1| hypothetical protein STH3303 [Symbiobacterium thermophilum IAM
14863]
gi|60390891|sp|Q67J66.1|RLMH_SYMTH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|51858126|dbj|BAD42284.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 161
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 6/158 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDEDMA 133
IR++TVGK + +Q V EY+ +L+ Y +VE + + P G AQ ++ E
Sbjct: 3 IRLVTVGKVKEKYLQDGVQEYLKRLRPYARVEIVTVPDEPIPDGASPAQEAQVMQREGER 62
Query: 134 VMNIISS--DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + VV+LD G + SE++A + + G + ++F IGG G P + R
Sbjct: 63 LLRALDQGGQEHVVVLDGRGKNFSSEELAAFLAERALHGDANLAFVIGGSLGLDPAVLAR 122
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A ++ L M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 AGTTLSLGRMTFLHQMVPLILLEQIYRAFKINRGEKYH 160
>gi|296505887|ref|YP_003667587.1| SPOUT methyltransferase superfamily protein [Bacillus thuringiensis
BMB171]
gi|296326939|gb|ADH09867.1| SPOUT methyltransferase superfamily protein [Bacillus thuringiensis
BMB171]
Length = 175
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 19 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 78
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 79 ILDKISDDTHVIALAIEGKQKSSEEFAISLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 138
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 139 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 174
>gi|373118219|ref|ZP_09532354.1| rRNA large subunit m3Psi methyltransferase RlmH [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371667633|gb|EHO32754.1| rRNA large subunit m3Psi methyltransferase RlmH [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 162
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIK 128
+ + +++I VGK + EY+ +L YCK++ + +L SNP + + A ++
Sbjct: 2 KGIRVQLICVGKMKEKFYIDAAAEYVKRLSAYCKLQVVELPEERLPSNP-SQARIDAALE 60
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
E A+ ++ +V L G SE+++ L+ D S G S +SF IGG YG P +
Sbjct: 61 KEAAAIRAKLAPGASLVALCVEGRMRSSEELSGLLSDWSSRGGSSLSFLIGGSYGLAPSL 120
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +A + +S M H +A ++L+EQLYRS+ I +G +YH
Sbjct: 121 KAQAWAKLSMSPMTFPHHLARVMLLEQLYRSFKIDEGSSYH 161
>gi|393784593|ref|ZP_10372756.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
salyersiae CL02T12C01]
gi|392665574|gb|EIY59098.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
salyersiae CL02T12C01]
Length = 166
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++YI + K + D+++ KNT ++ +++ E +
Sbjct: 14 LLVVGRTVEQHYITAINDYIQRTKRFITF-DMEVIPELKNTKNISMELQKEKEGELICKA 72
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
D +V+LDE+G ++ S + AE M +T R+ F IGGPYG K+ + A+ I
Sbjct: 73 FQPGDVIVLLDEHGKEMRSLEFAEWMKRKMNTVNKRLVFVIGGPYGFSQKVYDVAHEKIS 132
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 133 MSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|229220668|ref|NP_981900.2| rRNA large subunit methyltransferase [Bacillus cereus ATCC 10987]
gi|88909495|sp|Q72WX0.2|RLMH_BACC1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 159
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVIKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|297618472|ref|YP_003703631.1| hypothetical protein Slip_2327 [Syntrophothermus lipocalidus DSM
12680]
gi|297146309|gb|ADI03066.1| protein of unknown function DUF163 [Syntrophothermus lipocalidus
DSM 12680]
Length = 159
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKV---EDLQLRSNPK-NTGDVKAQIKDED 131
+ IR+I+VGK R + +DEY+ ++ Y +V E L+ R +PK + + + + E
Sbjct: 1 MEIRLISVGKIRDKVYKEKIDEYLKWIRPYARVTFTEGLEERLSPKAGSREQEEARRREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
V+++I ++ +V LD G + S+Q+A ++ G R++F +GG G ++ R
Sbjct: 61 QRVLSLIDKNELLVALDAGGEQVTSDQLAAILERLLVMGKRRLNFVVGGATGLDGSVKAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + LSS+ HQ+A+LVL EQLYR +TI+ YH
Sbjct: 121 ADMVLSLSSLTFPHQLAVLVLSEQLYRVFTIIHSHPYH 158
>gi|228918071|ref|ZP_04081599.1| hypothetical protein bthur0012_52670 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228930465|ref|ZP_04093465.1| hypothetical protein bthur0010_51430 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228936739|ref|ZP_04099530.1| hypothetical protein bthur0009_51740 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228949181|ref|ZP_04111449.1| hypothetical protein bthur0007_53010 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229124962|ref|ZP_04254136.1| hypothetical protein bcere0016_52390 [Bacillus cereus 95/8201]
gi|229164409|ref|ZP_04292338.1| hypothetical protein bcere0009_51670 [Bacillus cereus R309803]
gi|229187688|ref|ZP_04314824.1| hypothetical protein bcere0004_52190 [Bacillus cereus BGSC 6E1]
gi|229199588|ref|ZP_04326249.1| hypothetical protein bcere0001_50860 [Bacillus cereus m1293]
gi|301056933|ref|YP_003795144.1| hypothetical protein BACI_c54610 [Bacillus cereus biovar anthracis
str. CI]
gi|228583993|gb|EEK42150.1| hypothetical protein bcere0001_50860 [Bacillus cereus m1293]
gi|228595756|gb|EEK53440.1| hypothetical protein bcere0004_52190 [Bacillus cereus BGSC 6E1]
gi|228619059|gb|EEK75956.1| hypothetical protein bcere0009_51670 [Bacillus cereus R309803]
gi|228658463|gb|EEL14129.1| hypothetical protein bcere0016_52390 [Bacillus cereus 95/8201]
gi|228810464|gb|EEM56817.1| hypothetical protein bthur0007_53010 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228822948|gb|EEM68789.1| hypothetical protein bthur0009_51740 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228829184|gb|EEM74821.1| hypothetical protein bthur0010_51430 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228841551|gb|EEM86667.1| hypothetical protein bthur0012_52670 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300379102|gb|ADK08006.1| putative cytoplasmic protein [Bacillus cereus biovar anthracis str.
CI]
Length = 177
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 21 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 80
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 81 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 140
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 141 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 176
>gi|389574579|ref|ZP_10164639.1| hypothetical protein BAME_32080 [Bacillus sp. M 2-6]
gi|388425701|gb|EIL83526.1| hypothetical protein BAME_32080 [Bacillus sp. M 2-6]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I +ITVGK + ++ + EY +L+ Y K++ ++L P+N D +I KD E
Sbjct: 1 MNISIITVGKLKEKYLKQGIAEYTKRLQAYAKIDIIELADEKAPENLSDQDMKIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D V+ L G SE++A+ + + G S++ F IGG G + +R
Sbjct: 61 ERILSKINPDAHVIALAIEGKMKSSEELADTIDKLATYGKSKVCFVIGGSLGLSDAVMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 121 ANEKLSFSRMTFPHQLMRLVLVEQIYRAFRIVRGEPYH 158
>gi|311032219|ref|ZP_07710309.1| rRNA large subunit methyltransferase [Bacillus sp. m3-13]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +IT+GK + ++ +DEY+ +L Y K++ ++L P+ D + Q+K+ E
Sbjct: 1 MNISIITIGKLKEKYLKQGIDEYLKRLSAYAKIDIVELPDEKAPEQLSDAEMEQVKNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D V+ L G SE++A+ M + G S+++F IGG G + +R
Sbjct: 61 ERILGKISEDTHVIALAIEGKQRSSEELAKEMDKLATYGKSKVAFVIGGSLGLSGDVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN ++ S M HQ+ L+L+EQ+YR + I++ + YH
Sbjct: 121 ANDTLSFSKMTFPHQLMKLILLEQVYRGFRIIRNEPYH 158
>gi|229020683|ref|ZP_04177412.1| hypothetical protein bcere0030_51580 [Bacillus cereus AH1273]
gi|229026899|ref|ZP_04183223.1| hypothetical protein bcere0029_51640 [Bacillus cereus AH1272]
gi|228734402|gb|EEL85072.1| hypothetical protein bcere0029_51640 [Bacillus cereus AH1272]
gi|228740611|gb|EEL90880.1| hypothetical protein bcere0030_51580 [Bacillus cereus AH1273]
Length = 177
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 21 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 80
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 81 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVTFVIGGSLGLSSEVMKRSN 140
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 141 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 176
>gi|47568658|ref|ZP_00239355.1| conserved hypothetical protein protein TIGR00246 [Bacillus cereus
G9241]
gi|65317440|ref|ZP_00390399.1| COG1576: Uncharacterized conserved protein [Bacillus anthracis str.
A2012]
gi|222098936|ref|YP_002532994.1| rRNA large subunit methyltransferase [Bacillus cereus Q1]
gi|375287480|ref|YP_005107919.1| hypothetical protein BCN_5386 [Bacillus cereus NC7401]
gi|386739323|ref|YP_006212504.1| hypothetical protein [Bacillus anthracis str. H9401]
gi|47506193|gb|AAT34869.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
'Ames Ancestor']
gi|47554646|gb|EAL13000.1| conserved hypothetical protein protein TIGR00246 [Bacillus cereus
G9241]
gi|49182223|gb|AAT57599.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
Sterne]
gi|51978736|gb|AAU20286.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|118419712|gb|ABK88131.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|221242995|gb|ACM15705.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|358356007|dbj|BAL21179.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|384389174|gb|AFH86835.1| Hypothetical Protein H9401_5451 [Bacillus anthracis str. H9401]
Length = 182
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 26 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 85
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 86 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 145
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 146 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 181
>gi|187777449|ref|ZP_02993922.1| hypothetical protein CLOSPO_01016 [Clostridium sporogenes ATCC
15579]
gi|187774377|gb|EDU38179.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
sporogenes ATCC 15579]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ + L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKSITSEEFSNLIENCRLTGNSAITFVIGGSLGLSE 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL + YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCREPYH 158
>gi|415883876|ref|ZP_11545905.1| rRNA large subunit methyltransferase [Bacillus methanolicus MGA3]
gi|387591671|gb|EIJ83988.1| rRNA large subunit methyltransferase [Bacillus methanolicus MGA3]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I ++TVGK + ++ ++EY+ +L Y KVE +++ P+ D + Q+K E
Sbjct: 3 ISIVTVGKLKEKYLKQGIEEYLKRLSSYAKVEVIEVPDEKAPEILSDTEMEQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +S D +V+ L G SE++A+ + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILAKLSPDAYVIALAIQGKMKSSEELADSLDKLATYGKSKIAFVIGGSLGLSNEVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I++G+ YH
Sbjct: 123 EQLSFSKMTFPHQLMRLILVEQIYRAFRIIRGEPYH 158
>gi|254733623|ref|ZP_05191340.1| rRNA large subunit methyltransferase [Bacillus anthracis str.
Western North America USA6153]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I +GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIIXIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|410098315|ref|ZP_11293293.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
goldsteinii CL02T12C30]
gi|409222189|gb|EKN15134.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
goldsteinii CL02T12C30]
Length = 157
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I +I +GK + ++EY +L +Y E D++ N KN +V+ + K+
Sbjct: 1 MKIALIVIGKTDAGYFVEAINEYKNRLVHYIPFEMEVIPDIK---NVKNLSEVQQKEKEG 57
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ ++ + S D++V+LD+ G + S Q + + T R+ F +GGPYG + +
Sbjct: 58 EL-ILKTLQSGDYLVLLDDKGKEFTSMQFSAYIEKKMHTIPKRLVFVVGGPYGFSEAVYK 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A+ I LS M +HQ+ L+ +EQ+YR+ TIL + YHH
Sbjct: 117 AASEKISLSKMTFSHQMIRLIFIEQIYRAMTILNNEPYHH 156
>gi|423451292|ref|ZP_17428145.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG5X1-1]
gi|423471624|ref|ZP_17448368.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6O-2]
gi|401146300|gb|EJQ53816.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG5X1-1]
gi|402431435|gb|EJV63503.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BAG6O-2]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKITFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|294778477|ref|ZP_06743900.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides vulgatus PC510]
gi|423312148|ref|ZP_17290085.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
vulgatus CL09T03C04]
gi|294447739|gb|EFG16316.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides vulgatus PC510]
gi|392688632|gb|EIY81916.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
vulgatus CL09T03C04]
Length = 157
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ ++ VG+ +++Y+ + +++ D+++ KNT ++ + Q + E
Sbjct: 1 MKFTLLVVGRTVEKHYITAINDYVERTRHFISF-DMEVIPELKNTKNLSMEQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D VV+LDE+G + S + A + T R+ F IGGPYG PK+ + A
Sbjct: 60 ILKALLPGDVVVLLDEHGKEFRSVEFANWIERKMHTVNKRLVFIIGGPYGFAPKIYDAAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ VEQLYR+ TIL YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFVEQLYRAMTILNNGPYHH 156
>gi|423069860|ref|ZP_17058645.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
intermedius F0395]
gi|355363734|gb|EHG11470.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
intermedius F0395]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +LK++ K E ++L P ++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYAKRLKHFTKFELIELSDEKTPDKASHLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++++ D G S I+F IGG G +++R
Sbjct: 61 NRILSKITDKEFVIALAIEGQQFPSEEFSKILSDITIRGISNITFVIGGSLGLSNTVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|147679192|ref|YP_001213407.1| hypothetical protein PTH_2857 [Pelotomaculum thermopropionicum SI]
gi|238686641|sp|A5CY81.1|RLMH_PELTS RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|146275289|dbj|BAF61038.1| uncharacterized conserved protein [Pelotomaculum thermopropionicum
SI]
Length = 160
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDEDM 132
I V+ VG+ + + EY+ +L Y K VED L NP G K + K+ +
Sbjct: 4 ITVLAVGRLKEKYLTEGAAEYLKRLSAYAKISVVEVEDGSLPENPAAAGGEKVKEKEGER 63
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ + +++ LD G SE+MAE++ +G S I+F IGG G K+ ERA
Sbjct: 64 -LLGRLRPGTFLIALDVRGKMHSSEEMAEILNRLALSGRSDITFAIGGALGLSEKVLERA 122
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ + S M HQ+ L+L+EQLYR + I +G+ YH+
Sbjct: 123 AMRLSFSRMTFPHQLVRLILLEQLYRWFKIARGEPYHY 160
>gi|315608136|ref|ZP_07883128.1| alpha/beta knot family protein [Prevotella buccae ATCC 33574]
gi|402304661|ref|ZP_10823726.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella sp. MSX73]
gi|315250105|gb|EFU30102.1| alpha/beta knot family protein [Prevotella buccae ATCC 33574]
gi|400380788|gb|EJP33598.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella sp. MSX73]
Length = 156
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 116 NPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
N KN + + + ++ +M ++ + D VV+LDE+G++ S + A +G + A R+
Sbjct: 43 NTKNLSESQQKEREGEM-ILKFLQPSDTVVLLDEHGIEFRSLEFATWLGKKRNV-ARRLV 100
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F +GGPYG + +RA+ + LS M +HQ+ L+ EQ+YR+ TI+KG+ YHH
Sbjct: 101 FVVGGPYGFSSAVYDRADEKVSLSRMTFSHQMIRLIFTEQIYRACTIIKGEPYHH 155
>gi|197120136|ref|YP_002140563.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase [Geobacter
bemidjiensis Bem]
gi|238690878|sp|B5EEI1.1|RLMH_GEOBB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|197089496|gb|ACH40767.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase, putative
[Geobacter bemidjiensis Bem]
Length = 154
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++++ VGK + V+ ++EY G+++ Y +E L+ R + + E +A
Sbjct: 1 MRLKLLWVGKTQESWVRTGIEEYAGRIRRYLPLEILEAREEKGAQAAAMRERECERLA-- 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+I +V+LDE G + S ++A + G + F IGG YG + R +A S
Sbjct: 59 KLIPKGGRLVLLDERGEAMTSPELASFLSKNRDQGTQDLVFAIGGAYGFTDQFRSQAFKS 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M L HQ+ + L+EQ+YR +TI+ + YHH
Sbjct: 119 ISLSRMTLTHQMVRVFLLEQIYRGFTIINCEPYHH 153
>gi|348589911|ref|YP_004874373.1| 50S m3Psi1915 methyltransferase RlmH ybeA [Taylorella
asinigenitalis MCE3]
gi|347973815|gb|AEP36350.1| LSU m3Psi1915 methyltransferase RlmH ybeA [Taylorella
asinigenitalis MCE3]
Length = 156
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 10/157 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMN 136
+++I VG+K V+ EY ++ +V +++ P+ +G Q+ E + + +
Sbjct: 3 LKIIAVGQKMPKWVEEAYAEYEKRMPPEIQVSLHEVKPEPRTSGKTAKQMMAAEAIRIES 62
Query: 137 IISSDDWVVMLDENGLDIG----SEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
ISSD WVV LDE+G D+ S++++E M + + IGGP G ++ ++
Sbjct: 63 AISSDAWVVALDEHGRDLTTVSLSKRLSEWMNEK-----PEVVLLIGGPDGLDEVLKSKS 117
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N ++LSS+ L H + ++L+EQLYR+W+IL YH
Sbjct: 118 NEKLRLSSLTLPHPMVRVLLIEQLYRAWSILNNHPYH 154
>gi|319942483|ref|ZP_08016794.1| ribosomal RNA large subunit methyltransferase H [Sutterella
wadsworthensis 3_1_45B]
gi|319803956|gb|EFW00872.1| ribosomal RNA large subunit methyltransferase H [Sutterella
wadsworthensis 3_1_45B]
Length = 155
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+R++ VG+ + Q V Y+ + V+ ++R+ + ++ E ++
Sbjct: 3 VRILAVGQHIADWAQEAVRGYLARFPRSWSVDLKEIRTEHRAGQTPAKLMQLEAERLLAA 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D+VV+LDE+G D+ + +A M G G R+ F IGGP G P+++ A +++
Sbjct: 63 IEPGDFVVVLDEHGKDLTTVDLARQMHAWGGEG-DRVVFVIGGPDGLAPEVKAAARATVR 121
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS+M L H +A ++L EQLYR W+I G YH
Sbjct: 122 LSAMTLPHALARVLLAEQLYRVWSIEAGHPYH 153
>gi|374301078|ref|YP_005052717.1| ribosomal RNA large subunit methyltransferase H [Desulfovibrio
africanus str. Walvis Bay]
gi|332554014|gb|EGJ51058.1| Ribosomal RNA large subunit methyltransferase H [Desulfovibrio
africanus str. Walvis Bay]
Length = 156
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
IR I VGK ++ + V+ Y ++ Y +E + L+ PK + A+ E A++
Sbjct: 4 IRCIVVGKLKAPHFREAVEFYNTRVSRYYPLEIVVLKDAPKALAPM-AKASHEGQAILGK 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
++S D + LDE G + S Q A +G S+ F IGG +G +R S+
Sbjct: 63 LTSQDRPICLDERGKALTSRQFAATVGHWIEDPGSQPCFIIGGAFGLSDAVRGSCATSLA 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L M ++H++A +VL+EQLYR+ IL G YHH
Sbjct: 123 LGPMTMSHELARVVLLEQLYRAAAILHGHPYHH 155
>gi|149195686|ref|ZP_01872743.1| hypothetical protein LNTAR_17378 [Lentisphaera araneosa HTCC2155]
gi|149141148|gb|EDM29544.1| hypothetical protein LNTAR_17378 [Lentisphaera araneosa HTCC2155]
Length = 149
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Query: 78 IRV--ITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
IRV + +GK + +Q +D+Y+ +LK Y +L L+ P D K +D ++
Sbjct: 2 IRVDFLVIGKTKEKWIQTGIDKYLKRLKPYA---NLTLKELPDQAVD-----KRKDSKIL 53
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+SS D +++LDE GL+ S + A+ + + ++ F +G YG + RAN +
Sbjct: 54 QAVSSRDLLILLDEKGLEFASVEGAKWLEKKAHHCSGKLIFVVGSAYGFTEEEYSRANHT 113
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M H++ + +EQLYR +I KG YHH
Sbjct: 114 LSLSKMTFTHEMVRVFFLEQLYRMLSIQKGTPYHH 148
>gi|153003131|ref|YP_001377456.1| hypothetical protein Anae109_0254 [Anaeromyxobacter sp. Fw109-5]
gi|166987513|sp|A7H6X6.1|RLMH_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|152026704|gb|ABS24472.1| protein of unknown function DUF163 [Anaeromyxobacter sp. Fw109-5]
Length = 153
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM-AV 134
+ +RV+ VG+ RS ++EY +L Y K E +++ K+ G AQ +DE+ A+
Sbjct: 1 MRLRVVAVGRDRSGLYAPAIEEYAKRLGRYVKFELVEVPEARKHAG--TAQARDEEAEAL 58
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + + V+ LDE G + S AE + + G ++ IGG G + +RA
Sbjct: 59 LAKLGPRERVIALDERGAEWTSVAFAERV-RRWTEGGRDVALVIGGSDGLSRAVLDRAEE 117
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ LS M L H++A LVLVEQLYR+ TIL+G+ YH
Sbjct: 118 TLALSRMTLAHRLARLVLVEQLYRAMTILRGEPYH 152
>gi|255657605|ref|ZP_05403014.1| hypothetical protein CdifQCD-2_18336 [Clostridium difficile
QCD-23m63]
gi|296452715|ref|ZP_06894405.1| alpha/beta knot family protein [Clostridium difficile NAP08]
gi|296880032|ref|ZP_06904002.1| alpha/beta knot family protein [Clostridium difficile NAP07]
gi|296258405|gb|EFH05310.1| alpha/beta knot family protein [Clostridium difficile NAP08]
gi|296429009|gb|EFH14886.1| alpha/beta knot family protein [Clostridium difficile NAP07]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I ++ VGK + ++L +DE+ +L YCK+E ++L P+N + +I KD E
Sbjct: 1 MNISIVVVGKIKEKYLKLGIDEFKKRLSKYCKLEIIELDDEKAPENLSSKEMEIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + +V+ L +G + SE++A+ M D G S + F IGG G ++ R
Sbjct: 61 KKILGKVKHNSYVIALAIDGKSLSSEELAKTMSDLAVRGNSSLCFIIGGSLGLSDEVLGR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I G+ YH
Sbjct: 121 ADYRLSFSRMTFPHQMMRLILLEQIYRAYRINNGEPYH 158
>gi|114567973|ref|YP_755127.1| hypothetical protein Swol_2467 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|118574552|sp|Q0AU48.1|RLMH_SYNWW RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|114338908|gb|ABI69756.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 159
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVE---DLQLRSNPK-NTGDVKAQIKDEDMAV 134
R+I+VG+ R V EY+ +L Y +E L+ + P+ +++A ++ E +
Sbjct: 4 RIISVGRIRESFYLEGVREYLKRLGPYTSIELIDGLEEKIGPRAGEKEIQAILQKEAEKI 63
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ D+ +V+LD G SE+MA + ++G SR++F +G +G +++++A
Sbjct: 64 RRWLDKDEILVVLDLEGQVRSSEEMARQLEKWNASGKSRVTFLLGAAHGLANEIKQQAQE 123
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+I LS + HQ+A+L+L EQ+YR + ILKG+ YH
Sbjct: 124 TISLSRLTFPHQMAVLILAEQIYRGFKILKGEPYHR 159
>gi|170708636|ref|ZP_02899075.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0389]
gi|170126418|gb|EDS95306.1| conserved hypothetical protein TIGR00246 [Bacillus anthracis str.
A0389]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRLN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|78045158|ref|YP_358930.1| hypothetical protein CHY_0058 [Carboxydothermus hydrogenoformans
Z-2901]
gi|118574449|sp|Q3AG04.1|RLMH_CARHZ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|77997273|gb|ABB16172.1| conserved hypothetical protein TIGR00246 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I ++ VGK + ++ + EY+ +L Y ++ +++ + P+N +A+ +K E
Sbjct: 1 MEITIVAVGKIKERYLKEGIAEYLKRLSPYARLAVIEVDDENAPENLSPAEAEKVVKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +V+ LD G ++ SE+ A + + G S+++F IGG G ++ ER
Sbjct: 61 ERILAKITPSSFVIALDLKGKNLSSEEFAHFISEKNLYGQSKLTFIIGGSLGLSREVLER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + M HQ+ L+L+EQ+YR++ I++G+ YH
Sbjct: 121 ADFKLSFGRMTYPHQLMRLILLEQIYRAFKIIRGEPYH 158
>gi|417916900|ref|ZP_12560466.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis bv. 2 str. SK95]
gi|342827647|gb|EGU62029.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis bv. 2 str. SK95]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + VE ++L P + + ++ E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFATVEIIELADEKTPDKASESENHKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D+VV+L G SE+ ++ + A G S ++F IGG G P ++ R
Sbjct: 61 NRILSKIGERDFVVVLAIEGKIFSSEEFSKQLEQASIKGFSTLTFIIGGSLGLSPAVKYR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|330718000|ref|ZP_08312600.1| rRNA large subunit methyltransferase [Leuconostoc fallax KCTC 3537]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ---IKDEDM 132
I++ITVGK + ++ + EY +L + VE ++L P+ + Q +K+ D
Sbjct: 3 IKLITVGKLKEKYLKDGIAEYAKRLSRFAHVEIIELADEKTPEKASAAQNQQIMLKEGD- 61
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + I D+V+ L G + SEQ A+ M + G S I+F IGG G P++++RA
Sbjct: 62 RIQSKIGDRDYVIALAIEGKQVPSEQFADKMANITLDGFSTITFIIGGSLGLTPEIKQRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 122 NFKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|157151670|ref|YP_001451371.1| rRNA large subunit methyltransferase [Streptococcus gordonii str.
Challis substr. CH1]
gi|189039508|sp|A8B011.1|RLMH_STRGC RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|157076464|gb|ABV11147.1| conserved hypothetical protein TIGR00246 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +L + KVE ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKEGIAEYSKRLSRFTKVEIIELADEKTPDKASPLENQQILSKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + ++V++L G SE+ ++++ DA G S I+F IGG G K++ER
Sbjct: 61 ERILSKVLDREFVIVLAIEGQQFPSEKFSKVIEDASVRGFSDITFIIGGSLGLSAKVKER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGQLTLPHQLMRLVLMEQIYRAFMIQQGSPYH 158
>gi|256004932|ref|ZP_05429905.1| protein of unknown function DUF163 [Clostridium thermocellum DSM
2360]
gi|385780251|ref|YP_005689416.1| hypothetical protein Clo1313_2987 [Clostridium thermocellum DSM
1313]
gi|419722485|ref|ZP_14249628.1| Ribosomal RNA large subunit methyltransferase H [Clostridium
thermocellum AD2]
gi|419726620|ref|ZP_14253641.1| Ribosomal RNA large subunit methyltransferase H [Clostridium
thermocellum YS]
gi|255991112|gb|EEU01221.1| protein of unknown function DUF163 [Clostridium thermocellum DSM
2360]
gi|316941931|gb|ADU75965.1| protein of unknown function DUF163 [Clostridium thermocellum DSM
1313]
gi|380769904|gb|EIC03803.1| Ribosomal RNA large subunit methyltransferase H [Clostridium
thermocellum YS]
gi|380781497|gb|EIC11152.1| Ribosomal RNA large subunit methyltransferase H [Clostridium
thermocellum AD2]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I +I VGK + ++ ++EY +L YCK+E +++ P N ++ Q K E
Sbjct: 1 MRITIIAVGKIKEKYLKEGINEYSKRLSRYCKLEIIEVEDEHAPDNLSSLEEQQVKKREA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
V+ + +V+LD G + SE++A + +G S ++F IGG G ++
Sbjct: 61 ERVVKRLKEGTLLVVLDVRGSKMSSEELARKLESFFISGKSHVTFVIGGSLGIDKELLNM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S+ LS M HQ+ L+L+EQLYRS+ I+ G+ YH
Sbjct: 121 ADFSLSLSDMTFPHQLTRLILLEQLYRSFKIINGEPYH 158
>gi|342164899|ref|YP_004769538.1| rRNA large subunit methyltransferase [Streptococcus
pseudopneumoniae IS7493]
gi|383939212|ref|ZP_09992392.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudopneumoniae SK674]
gi|418972975|ref|ZP_13521019.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|341934781|gb|AEL11678.1| rRNA large subunit methyltransferase [Streptococcus
pseudopneumoniae IS7493]
gi|383350712|gb|EID28574.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383713894|gb|EID69920.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudopneumoniae SK674]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKFEMIELSDEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ ++ D+V+ L G SE+ ++ + +A G S ++F IGG G ++ R
Sbjct: 61 QRILSKVADRDFVIALAIEGKMFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLSSAVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|125974811|ref|YP_001038721.1| rRNA large subunit methyltransferase [Clostridium thermocellum ATCC
27405]
gi|166987437|sp|A3DHU9.1|RLMH_CLOTH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|125715036|gb|ABN53528.1| protein of unknown function DUF163 [Clostridium thermocellum ATCC
27405]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I +I VGK + ++ ++EY +L YCK+E +++ P N ++ Q K E
Sbjct: 1 MRITIIAVGKIKEKYLKEGINEYSKRLSRYCKLEIIEVEDEHAPDNLSSLEEQQVKKREA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
V+ + +V+LD G + SE++A + +G S ++F IGG G ++
Sbjct: 61 ERVVKRLKEGTLLVVLDVRGSKMSSEELARKLESFFISGKSHVTFVIGGSLGIDKELLNM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S+ LS M HQ+ L+L+EQLYRS+ I+ G+ YH
Sbjct: 121 ADFSLSLSDMTFPHQLTRLILLEQLYRSFKIINGEPYH 158
>gi|423369421|ref|ZP_17346852.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD142]
gi|423659689|ref|ZP_17634858.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VDM022]
gi|401077858|gb|EJP86185.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD142]
gi|401304317|gb|EJS09874.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VDM022]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVNLDRLATYGKSKITFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|399117150|emb|CCG19964.1| ribosomal RNA large subunit methyltransferase H [Taylorella
asinigenitalis 14/45]
Length = 156
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 10/157 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMN 136
+++I VG+K V+ EY ++ +V +++ P+ +G Q+ E + + +
Sbjct: 3 LKIIAVGQKMPKWVEEAYAEYEKRMPPEIQVSLHEVKPEPRTSGKTAKQMMAAEAIRIES 62
Query: 137 IISSDDWVVMLDENGLDIG----SEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
ISSD WVV LDE+G D+ S++++E M + + IGGP G ++ ++
Sbjct: 63 AISSDAWVVALDEHGKDLTTVSLSKRLSEWMNEK-----PEVVLLIGGPDGLDEVLKSKS 117
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N ++LSS+ L H + ++L+EQLYR+W+IL YH
Sbjct: 118 NEKLRLSSLTLPHPMVRVLLIEQLYRAWSILNNHPYH 154
>gi|339640458|ref|ZP_08661902.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
oral taxon 056 str. F0418]
gi|339453727|gb|EGP66342.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
oral taxon 056 str. F0418]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++T+GK + ++ + EY +L + KVE ++L P ++ Q + E
Sbjct: 1 MKIKLVTIGKLKEKYLKEGIAEYSKRLSRFTKVEIIELADEKTPDKASQLENQQILAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ ++ ++V+ L G SE+ + ++ DA G S I+F IGG G +++ER
Sbjct: 61 ERILSKVADREFVIALAIEGQQFPSEKFSLVIEDASIKGFSNITFIIGGSLGLSSQVKER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
ANI + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANILMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|307710356|ref|ZP_07646797.1| conserved hypothetical protein [Streptococcus mitis SK564]
gi|307618948|gb|EFN98083.1| conserved hypothetical protein [Streptococcus mitis SK564]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGISEYSKRISRFAKLEMIELADEKTPDRASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G ++ R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTFSSEEFSKQLEEASIKGFSTLTFIIGGSLGLSSAVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVL EQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLAEQIYRAFTIQQGSPYH 158
>gi|160879066|ref|YP_001558034.1| rRNA large subunit methyltransferase [Clostridium phytofermentans
ISDg]
gi|189040634|sp|A9KLG6.1|RLMH_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|160427732|gb|ABX41295.1| protein of unknown function DUF163 [Clostridium phytofermentans
ISDg]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I V+ VGK + + + ++EY +L YCK+E ++L P N + QIK E
Sbjct: 1 MKITVVCVGKIKEKYLTMAIEEYSKRLSRYCKLEIIELADEKTPDNASPAEELQIKKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ L G + SE++A+ M G G S ++F IGG G ++ +R
Sbjct: 61 ERILKNIKDNAYVIALAIEGKMLSSEELADKMQLLGVNGESHLAFVIGGSLGLDSEVLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ +L+EQ+YR + I+ G+ YH
Sbjct: 121 ADFKLSFSKMTFPHQVMRTILLEQVYRGFRIMSGEPYH 158
>gi|401564386|ref|ZP_10805281.1| rRNA large subunit m3Psi methyltransferase RlmH [Selenomonas sp.
FOBRC6]
gi|400188884|gb|EJO23018.1| rRNA large subunit m3Psi methyltransferase RlmH [Selenomonas sp.
FOBRC6]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQ-IKDED 131
+ I V+ GK + ++ + EY +L+ Y V +++ R K + KA+ I+ E
Sbjct: 1 MKITVVCAGKLKEKYLREGIAEYEKRLRPYADVRTIEIPEERMKEKPSAAEKAETIRCEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D ++++LD G ++ SE+++ + G S I+F IGGP+G ++R R
Sbjct: 61 ERLLAQVPQDAYLIVLDVGGTELSSEELSAKIDRLAVEGQSHIAFLIGGPFGLADEVRRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S L HQ+ L L+EQ+YR++ I +G+ YH
Sbjct: 121 ADLRLSFSHFTLPHQLIRLFLMEQIYRAFKISRGEPYH 158
>gi|421453435|ref|ZP_15902791.1| putative cytosolic protein [Streptococcus salivarius K12]
gi|400181744|gb|EJO16011.1| putative cytosolic protein [Streptococcus salivarius K12]
Length = 167
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-- 123
+ YN + + +++ITVGK + ++ + EY+ +L + K E ++L P N +
Sbjct: 3 MCYN--KPMKVKLITVGKLKEKYLKDGIAEYVKRLGRFTKFESIELTDEKTPDNASEAEN 60
Query: 124 KAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
KA + E ++ + D+V+ L G SEQ A+ + G S I+F IGG G
Sbjct: 61 KAILDKEGQRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQVTLRGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
P +++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 LSPTVKKRANRLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 166
>gi|393788887|ref|ZP_10377011.1| ribosomal RNA large subunit methyltransferase H [Bacteroides nordii
CL02T12C05]
gi|392652866|gb|EIY46523.1| ribosomal RNA large subunit methyltransferase H [Bacteroides nordii
CL02T12C05]
Length = 166
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 71 NCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIK 128
NC ++ ++ VG+ +++YI + K + D+++ KNT + + Q +
Sbjct: 6 NCI-SMKTTLLVVGRTVEQHYITAINDYIQRTKRFISF-DMEVIPELKNTKSLSMEQQKE 63
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
E + + D VV+LDE+G ++ S + AE M +T R+ F IGGPYG ++
Sbjct: 64 KEGELICKALQPGDVVVLLDEHGKEMRSLEFAEYMKRKMNTVNKRLVFVIGGPYGFSQRV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ A I +S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 YDAAQEKISMSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 165
>gi|365844490|ref|ZP_09385334.1| rRNA large subunit m3Psi methyltransferase RlmH [Flavonifractor
plautii ATCC 29863]
gi|364564652|gb|EHM42404.1| rRNA large subunit m3Psi methyltransferase RlmH [Flavonifractor
plautii ATCC 29863]
Length = 162
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIK 128
+ + +++I VGK + EY+ +L YCK++ + +L SNP + + A ++
Sbjct: 2 KGIRVQLICVGKMKEKFYIDAAAEYVKRLSAYCKLQVVELPEERLPSNP-SQAQIDAALE 60
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
E A+ ++ ++ L G SE+++ L+ D S G S ++F IGG YG P +
Sbjct: 61 KEAAAIRARLAPGASLIALCVEGCMRSSEELSGLLSDWSSRGGSSLAFLIGGSYGLAPSL 120
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +A + +S M H +A ++L+EQLYRS+ I +G +YH
Sbjct: 121 KAQAWAKLSMSPMTFPHHLARVMLLEQLYRSFKIDEGSSYH 161
>gi|417847596|ref|ZP_12493558.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK1073]
gi|339456430|gb|EGP69021.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK1073]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGITEYSKRISRFAKLEMIELADEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G SE+ ++ + +A G S ++F IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTFSSEEFSKHLEEASIKGFSTLTFIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVL EQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLAEQIYRAFTIQQGSPYH 158
>gi|171920540|ref|ZP_02931815.1| protein OrfX [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|185178874|ref|ZP_02964647.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024189|ref|ZP_02996904.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518535|ref|ZP_03004002.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524084|ref|ZP_03004171.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867709|ref|ZP_03079710.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273499|ref|ZP_03206035.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|209554168|ref|YP_002284576.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225550857|ref|ZP_03771806.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|225551350|ref|ZP_03772296.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|238056565|sp|B5ZAY6.1|RLMH_UREU1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|171903237|gb|EDT49526.1| protein OrfX [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|184209512|gb|EDU06555.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188018831|gb|EDU56871.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997945|gb|EDU67042.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195659999|gb|EDX53379.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660564|gb|EDX53820.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198250019|gb|EDY74799.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|209541669|gb|ACI59898.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225379165|gb|EEH01530.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|225380011|gb|EEH02373.1| conserved hypothetical protein TIGR00246 [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQIKDEDMA- 133
I++I+VGK + G +V++Y+ ++ YY K +++ + P+ T + QIKD++
Sbjct: 3 IKIISVGKLKQTGFVNLVNDYLKRINYYLKCQEIVVNDEPEPTQISTKLLEQIKDKEANR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ +D+V+ L G I SE +AE + + + I F IGG G K+ ERAN
Sbjct: 63 ILKNINQNDFVIALIIEGKIISSEMLAENLQNWLNASYPNICFVIGGSNGLHEKIYERAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M H +A +++ EQ+YR+ +IL YH
Sbjct: 123 YHLSLSKMTFAHGLAKVMVCEQIYRALSILNNGKYH 158
>gi|224543700|ref|ZP_03684239.1| hypothetical protein CATMIT_02910 [Catenibacterium mitsuokai DSM
15897]
gi|224523353|gb|EEF92458.1| rRNA large subunit m3Psi methyltransferase RlmH [Catenibacterium
mitsuokai DSM 15897]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDEDM 132
I++ITVGK + ++ V EY+ +L Y VE D ++ +NP + + K E
Sbjct: 3 IKIITVGKLKEKYLRDGVQEYVKRLGAYAHVELIEVPDEKIPNNPSLAEEALVKSK-EGR 61
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ + +D++++LD ++ S ++ + G S I F IGG GHG + RA
Sbjct: 62 KILDHVKQNDFMILLDVASREMDSVAFSQYIEKKMIDGYSTIDFVIGGSLGHGADVLARA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ L+LVEQ+YR++ I+K + YH
Sbjct: 122 DFKLSFSPMTFPHQLMRLILVEQIYRAFKIMKNETYH 158
>gi|228898762|ref|YP_001648023.2| rRNA large subunit methyltransferase [Bacillus weihenstephanensis
KBAB4]
gi|423490607|ref|ZP_17467289.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BtB2-4]
gi|423496331|ref|ZP_17472975.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
CER057]
gi|423496875|ref|ZP_17473492.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
CER074]
gi|423513090|ref|ZP_17489620.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuA2-1]
gi|423520116|ref|ZP_17496597.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuA2-4]
gi|423595367|ref|ZP_17571397.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD048]
gi|423597284|ref|ZP_17573284.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD078]
gi|423671007|ref|ZP_17646036.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VDM034]
gi|423672770|ref|ZP_17647709.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VDM062]
gi|229470422|sp|A9VTJ5.2|RLMH_BACWK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|401149513|gb|EJQ56984.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
CER057]
gi|401156709|gb|EJQ64112.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuA2-4]
gi|401163295|gb|EJQ70642.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
CER074]
gi|401222043|gb|EJR28645.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD048]
gi|401238816|gb|EJR45248.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VD078]
gi|401294501|gb|EJS00129.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VDM034]
gi|401311284|gb|EJS16591.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
VDM062]
gi|402428952|gb|EJV61043.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
BtB2-4]
gi|402446133|gb|EJV77996.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuA2-1]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSIDRLATYGKSKITFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|42740585|gb|AAS44508.1| conserved hypothetical protein TIGR00246 [Bacillus cereus ATCC
10987]
Length = 182
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 26 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 85
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 86 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVIKRSN 145
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 146 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 181
>gi|423520704|ref|ZP_17497177.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuA4-10]
gi|401179801|gb|EJQ86964.1| ribosomal RNA large subunit methyltransferase H [Bacillus cereus
HuA4-10]
Length = 159
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I ++++GK + ++ + EY+ +L Y KVE ++L P+N + I + E +
Sbjct: 3 ISIVSIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKITFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|389871883|ref|YP_006379302.1| rRNA large subunit methyltransferase [Advenella kashmirensis WT001]
gi|388537132|gb|AFK62320.1| rRNA large subunit methyltransferase [Advenella kashmirensis WT001]
Length = 156
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAVMNII 138
VI VG K V +Y+ ++ C +E +++ P+ +G Q+ + E + ++
Sbjct: 5 VIAVGNKMPDWVTTAWKDYVKRMPADCTIELREIKPEPRTSGKTPQQMMEAEGRRIQAVL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASR-ISFCIGGPYGHGPKMRERANISIK 197
++D V+ LDE+G D+ + ++ + G G S+ ++F IGGP G +++R I+
Sbjct: 65 AADSLVIALDEHGRDLTTMDLSRQL--EGWRGNSQDVTFLIGGPDGLDADLKKRCASLIR 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LSS+ L H + +VL EQLYR+W IL YH
Sbjct: 123 LSSLTLPHPMVRIVLAEQLYRAWAILSNHPYHR 155
>gi|374339019|ref|YP_005095739.1| 50S m3Psi methyltransferase RlmH [Streptococcus macedonicus ACA-DC
198]
gi|372285139|emb|CCF03481.1| LSU m3Psi methyltransferase RlmH [Streptococcus macedonicus ACA-DC
198]
Length = 159
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I VGK + ++ + EY ++ + K E ++L P N + Q ++ E
Sbjct: 1 MKVKIIAVGKLKEKYLKDGIVEYGKRMSRFTKFEIVELADEKTPDNASAAQNQQIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D+V++L G + SE ++++ DA G S I F IGG G K+++R
Sbjct: 61 ERILAKISERDYVIVLAIEGKQLSSEAFSQVIADATLRGYSDIVFVIGGSLGLADKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + S+ L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANLCLSFGSLTLPHQLMRLVLSEQIYRAFMIQQGSPYH 158
>gi|172059026|ref|YP_001815486.1| rRNA large subunit methyltransferase [Exiguobacterium sibiricum
255-15]
gi|407478640|ref|YP_006792517.1| ribosomal RNA large subunit methyltransferase H [Exiguobacterium
antarcticum B7]
gi|229564358|sp|B1YG85.1|RLMH_EXIS2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|171991547|gb|ACB62469.1| protein of unknown function DUF163 [Exiguobacterium sibiricum
255-15]
gi|407062719|gb|AFS71909.1| Ribosomal RNA large subunit methyltransferase H [Exiguobacterium
antarcticum B7]
Length = 159
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I +ITVGK + ++ + EY +L YC ++++++ P+ D + Q K E
Sbjct: 1 MQITIITVGKLKEKYLKQGIAEYTKRLGAYCSIQEIEVPDEKAPEQLSDAEMQQVKKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D V L G SEQ A + + G S+I+F IGG G P++ +R
Sbjct: 61 ERILAKIGPDVHVYALAIEGKQRTSEQFATELDRLATYGKSKIAFVIGGSLGLAPEVMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN +I S M HQ+ ++L EQ+YR++ I + + YH
Sbjct: 121 ANDTISFSKMTFPHQLMKMILCEQIYRAYRINRNEPYH 158
>gi|406885392|gb|EKD32601.1| Ribosomal RNA large subunit methyltransferase H [uncultured
bacterium]
Length = 157
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAVMNIISSDDWVVMLDENGLDIGS 156
Y ++K Y + +++ + K++IK+ E ++ I D +V+LD G + S
Sbjct: 23 YEERIKRYSDYKRIEIPELKSASSLSKSEIKEKEGDLILKQIKPQDELVLLDIEGRSLSS 82
Query: 157 EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQL 216
E+ A M G G + F GG YG + RAN + LSSM +HQ+ L+ +EQL
Sbjct: 83 EEFASFMEKRGVYGTKGVVFVAGGAYGFSDSVYSRANYKLSLSSMTFSHQLVRLIFLEQL 142
Query: 217 YRSWTILKGQNYHH 230
YR++TI+KG+ YHH
Sbjct: 143 YRAFTIIKGEPYHH 156
>gi|336431114|ref|ZP_08610968.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336020036|gb|EGN49753.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ I +ITVGK + ++ + EY +L YCK++ +++ ++ + + V+ I+ E
Sbjct: 1 MKITLITVGKIKEKYLKDAIAEYSKRLSKYCKLDIIEVPDEKTPDQASETVEEGIRSKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L+ G + SE++AE + G G S I+F IGG G G ++ +R
Sbjct: 61 EKILRYIKDDMYVITLEIAGKMLTSEELAERIEKLGIQGKSSIAFVIGGSIGLGKEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 SDYALSFSKMTFPHQLMRVILLEQVYRSYRIMNGEPYH 158
>gi|323487720|ref|ZP_08092978.1| hypothetical protein GPDM_00195 [Planococcus donghaensis MPA1U2]
gi|323398454|gb|EGA91242.1| hypothetical protein GPDM_00195 [Planococcus donghaensis MPA1U2]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I +I+VGK + ++ ++EY +L Y K+ ++++ P+ D +I K E
Sbjct: 1 MNISIISVGKLKEKYLKSGIEEYTKRLGSYSKINEIEVADEKAPEQLSDADMEIVKKKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M IS+D +V+ L +G SEQ+A+ + + G S+I F IGG G ++ +R
Sbjct: 61 DRIMAKISADAYVIALAIDGKMKTSEQLAKDIESLMTYGRSKIVFVIGGSLGLHDEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+LVEQ+YR++ I+KG+ YH
Sbjct: 121 ADEKLSFSKMTFPHQLMKLILVEQVYRAFRIMKGEPYH 158
>gi|407718916|ref|YP_006796321.1| rRNA large subunit methyltransferase [Leuconostoc carnosum JB16]
gi|407242672|gb|AFT82322.1| rRNA large subunit methyltransferase [Leuconostoc carnosum JB16]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQI-KDED 131
+ I++ITVGK + ++ + EY +L + K E ++L ++ K + QI + E
Sbjct: 1 MQIKLITVGKLKEKYLKDGIAEYSKRLSRFAKTEIIELADEKTPDKASAAQNKQILRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I S D+V++L G + SE A+ M + +G S I+F IGG G +++R
Sbjct: 61 QRIQEKIGSRDYVIVLAIEGKQLASEDFAQKMSEITLSGYSNITFIIGGSLGLDEAIKQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANFKMSFGLLTLPHQLMRLVLVEQIYRAYMIQQGSPYH 158
>gi|417933992|ref|ZP_12577312.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis bv. 2 str. F0392]
gi|340770562|gb|EGR93077.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis bv. 2 str. F0392]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD------ 129
+ I+++TVGK + ++ + EY ++ + VE ++L + T D ++ ++
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYTKRISRFATVEIIELAD--EKTPDKASESENYKILEI 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +++ + D+VV+L G + SE+ + + A G S ++F IGG G P ++
Sbjct: 59 EGNRILSKVGERDFVVVLAIEGKTLSSEEFSRQLEQASIKGFSTLTFIIGGSLGLSPAVK 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 119 YRANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|150008694|ref|YP_001303437.1| rRNA large subunit methyltransferase [Parabacteroides distasonis
ATCC 8503]
gi|255014491|ref|ZP_05286617.1| rRNA large subunit methyltransferase [Bacteroides sp. 2_1_7]
gi|256841274|ref|ZP_05546781.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262383575|ref|ZP_06076711.1| UPF0247 protein [Bacteroides sp. 2_1_33B]
gi|301311503|ref|ZP_07217430.1| alpha/beta knot family protein [Bacteroides sp. 20_3]
gi|410103110|ref|ZP_11298035.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
sp. D25]
gi|423330539|ref|ZP_17308323.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
distasonis CL03T12C09]
gi|423337806|ref|ZP_17315549.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
distasonis CL09T03C24]
gi|166980274|sp|A6LDQ1.1|RLMH_PARD8 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|149937118|gb|ABR43815.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737117|gb|EEU50444.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262294473|gb|EEY82405.1| UPF0247 protein [Bacteroides sp. 2_1_33B]
gi|300830589|gb|EFK61232.1| alpha/beta knot family protein [Bacteroides sp. 20_3]
gi|409232155|gb|EKN25003.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
distasonis CL03T12C09]
gi|409235879|gb|EKN28689.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
distasonis CL09T03C24]
gi|409238237|gb|EKN31032.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
sp. D25]
Length = 157
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I +I +GK + ++EY +L +Y E +++ + KN ++ +AQ K+ E
Sbjct: 1 MKIGLIVIGKTDAGYFVEAINEYKNRLTHYIPFE-MEVIPDIKNVKNLSEAQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D++V+LDE G + S Q + + T R+ F +GGPYG + + A+
Sbjct: 60 ILKALQPGDYLVLLDEKGKEFTSMQFSTYLEKKMHTVPKRLVFVVGGPYGFSEAVYKAAS 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ +EQ+YR+ TIL + YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFIEQIYRAMTILNNEPYHH 156
>gi|189467014|ref|ZP_03015799.1| hypothetical protein BACINT_03396 [Bacteroides intestinalis DSM
17393]
gi|189435278|gb|EDV04263.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides intestinalis DSM 17393]
Length = 157
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++Y+ + K Y D+++ KNT + +++ E +
Sbjct: 5 LLVVGRTVEQHFITAINDYVQRTKRYLSF-DMEVIPELKNTKSLSMEVQKEKEGELICKT 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
D +V+LDE G ++ S + A+ M +T R+ F IGGPYG K+ + A+ +
Sbjct: 64 FQPGDVIVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFVIGGPYGFSQKVYQAAHEKMS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ IL G YHH
Sbjct: 124 LSKMTFSHQMVRLIFVEQLYRAMNILNGGPYHH 156
>gi|239627532|ref|ZP_04670563.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517678|gb|EEQ57544.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD---VKAQIKD-ED 131
+ I ++TVGK + + + EY +L YCK++ +Q++ G V+ QIKD E
Sbjct: 1 MKITLVTVGKIKERYFEDAIKEYSKRLGRYCKLDIVQVQDEKTPDGASEAVERQIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +V+ L G + SE++A + G G S I F IGG G ++ R
Sbjct: 61 QRILSNIKDGAYVIALAIEGRMLSSEELASRLQKLGVDGISHIVFVIGGSLGLSDEVMGR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ ++ S M HQ+ +VL+EQ+YRS+ I+ G+ YH
Sbjct: 121 ADYALSFSKMTFPHQLMRVVLLEQIYRSYRIMAGEPYH 158
>gi|257417885|ref|ZP_05594879.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257159713|gb|EEU89673.1| conserved hypothetical protein [Enterococcus faecalis T11]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I+++TVGK + + ++EY+ +L Y K+E +++ P+ D + Q+K+ E
Sbjct: 1 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +++V +L NG + SE+ ++ + G +G S ++F IGG G + +R
Sbjct: 61 QRILGKINDNEYVFILAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N I + HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 121 SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYH 158
>gi|429204835|ref|ZP_19196117.1| rRNA large subunit methyltransferase [Lactobacillus saerimneri 30a]
gi|428146871|gb|EKW99105.1| rRNA large subunit methyltransferase [Lactobacillus saerimneri 30a]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ---IKD-EDMA 133
I+++ VGK + +L + EY +L+ YCK + +++ AQ +K+ E
Sbjct: 3 IKIVCVGKLKEKYFKLGIAEYQKRLQRYCKFQIVEVPDEKAPESLSPAQMTAVKEIEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE+ A+ + + G S I+F IGG G P + RA+
Sbjct: 63 ILQKIKDKEYVFALAIEGQERTSEKFAQEIQQLMTYGKSDITFVIGGSLGLSPAVLRRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ LVL EQ+YR+WTI+KG YH
Sbjct: 123 TQISFGRFTLPHQLMRLVLTEQIYRAWTIIKGLPYH 158
>gi|342218949|ref|ZP_08711547.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Megasphaera sp. UPII 135-E]
gi|341588580|gb|EGS31977.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Megasphaera sp. UPII 135-E]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKV-----EDLQLRSNPKNTGDVKAQIKDEDMAV 134
+IT+GK + + L +DE++ +LK Y V + ++ P V+ + E +
Sbjct: 5 IITIGKIKEKYITLGIDEFLKRLKPYVHVTMTSFSEEKMPDRPSLAERVRI-LDKEGEKM 63
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I + +V LD G I SEQ+A +G+ G S +F IGGP+G K+R+RA+
Sbjct: 64 VRAIKDNSYVYALDVQGELISSEQLALQLGELTVGGNSDFTFIIGGPFGLSDKVRQRADR 123
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ L+LVEQLYR+ I + + YH
Sbjct: 124 CISFGRITLTHQMIRLLLVEQLYRAHKIQRHEPYH 158
>gi|359799031|ref|ZP_09301600.1| rRNA large subunit methyltransferase [Achromobacter arsenitoxydans
SY8]
gi|359363169|gb|EHK64897.1| rRNA large subunit methyltransferase [Achromobacter arsenitoxydans
SY8]
Length = 156
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
V+ VG + VQ D+Y +L C +E +++ P+ TG AQ+ E + +
Sbjct: 5 VVAVGTRMPDWVQTAWDDYAKRLPADCALELREIKPEPRTTGKTPAQMMAAEAKRIEAAL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
S+ + LDE G D+ + +++ + + G ++F +GGP G P ++ A+ ++L
Sbjct: 65 PSNVLRLALDERGRDLTTMALSQKL-EQWRAGGQDVAFLVGGPDGLDPDLKASASGQLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SS+ L H + +VL EQLYR+W I+ YH
Sbjct: 124 SSLTLPHPMVRVVLAEQLYRAWAIMTNHPYHR 155
>gi|254977309|ref|ZP_05273781.1| hypothetical protein CdifQC_18445 [Clostridium difficile QCD-66c26]
gi|255316393|ref|ZP_05357976.1| hypothetical protein CdifQCD-7_18644 [Clostridium difficile
QCD-76w55]
gi|255519052|ref|ZP_05386728.1| hypothetical protein CdifQCD-_18173 [Clostridium difficile
QCD-97b34]
gi|255652236|ref|ZP_05399138.1| hypothetical protein CdifQCD_18760 [Clostridium difficile
QCD-37x79]
gi|260685190|ref|YP_003216475.1| rRNA large subunit methyltransferase [Clostridium difficile CD196]
gi|260688849|ref|YP_003219983.1| rRNA large subunit methyltransferase [Clostridium difficile R20291]
gi|306521953|ref|ZP_07408300.1| rRNA large subunit methyltransferase [Clostridium difficile
QCD-32g58]
gi|384362877|ref|YP_006200729.1| rRNA large subunit methyltransferase [Clostridium difficile BI1]
gi|260211353|emb|CBA66982.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260214866|emb|CBE07652.1| conserved hypothetical protein [Clostridium difficile R20291]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I ++ VGK + ++L +DE+ +L YCK+E ++L P+N + +I KD E
Sbjct: 1 MNISIVVVGKIKEKYLKLGIDEFKKRLSKYCKLEIIELDDEKAPENLSVKEMEIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V++L +G + SE++A+ M D G S + F IGG G ++ R
Sbjct: 61 KKILGKIKHNSYVIVLAIDGKGLSSEELAKTMSDLAVRGNSSLCFIIGGSLGLSDEVLGR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I G+ YH
Sbjct: 121 ADYRLSFSKMTFPHQMMRLILLEQIYRAYRINNGEPYH 158
>gi|421207755|ref|ZP_15664798.1| hypothetical protein AMCSP20_002355 [Streptococcus pneumoniae
2090008]
gi|421230789|ref|ZP_15687447.1| hypothetical protein AMCSP01_002186 [Streptococcus pneumoniae
2061376]
gi|421293047|ref|ZP_15743778.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA56348]
gi|421310716|ref|ZP_15761330.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA58981]
gi|395571858|gb|EJG32462.1| hypothetical protein AMCSP20_002355 [Streptococcus pneumoniae
2090008]
gi|395592591|gb|EJG52856.1| hypothetical protein AMCSP01_002186 [Streptococcus pneumoniae
2061376]
gi|395891295|gb|EJH02297.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA56348]
gi|395914044|gb|EJH24892.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA58981]
Length = 159
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKFEMIELSDEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D+V++L G SE++++ + + G S ++F IGG G ++ R
Sbjct: 61 QRILSKIADRDFVIVLAIEGKTFFSEELSKQLEETSIKGFSTLTFIIGGSLGLSSSVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGFPYH 158
>gi|150399114|ref|YP_001322881.1| rRNA large subunit methyltransferase [Methanococcus vannielii SB]
gi|166990869|sp|A6UP47.1|RLMH_METVS RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|150011817|gb|ABR54269.1| protein of unknown function DUF163 [Methanococcus vannielii SB]
Length = 159
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-KAQIKD-ED 131
+ I +I+VGK + ++ V EY +L Y K+ +++ P+N DV K++I D E
Sbjct: 1 MNITIISVGKIKEKYLEDAVLEYKKRLSRYTKLNIIEISDEKTPENPSDVEKSKILDKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ + D +VV L+ G ++ S+++A+ + D +G I F IGG G K+ E+
Sbjct: 61 EGIFKNLKGDFYVVTLEILGKELDSKELAKNINDLSISGKKNIVFVIGGSLGLSQKVSEK 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 SNFKLSFSKMTFPHQLMRVILLEQIYRSFRIINGEPYH 158
>gi|421250506|ref|ZP_15706956.1| hypothetical protein AMCSP19_002177 [Streptococcus pneumoniae
2082239]
gi|395612083|gb|EJG72129.1| hypothetical protein AMCSP19_002177 [Streptococcus pneumoniae
2082239]
Length = 159
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKFEMIELSDEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D+V++L G SE+ ++ + + G S ++F IGG G ++ R
Sbjct: 61 QRILSKIADSDFVIVLAIEGKTFFSEEFSKQLEETSIKGFSTLTFIIGGSLGLSSSVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGFPYH 158
>gi|325263877|ref|ZP_08130610.1| alpha/beta knot family protein [Clostridium sp. D5]
gi|324030915|gb|EGB92197.1| alpha/beta knot family protein [Clostridium sp. D5]
Length = 159
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I V+TVGK + ++ + EY +L YCK+ +++ P + ++ +I++ E
Sbjct: 1 MKITVLTVGKIKEKYLKDAIAEYSKRLSKYCKLNMIEVADEKTPDQASEAIEGKIREKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L+ G I SE +A+ + G TG S + F IGG G + R
Sbjct: 61 ERLLKHIREDSFVITLEIQGKQITSEGLADKIEKLGVTGTSHVIFVIGGSIGLSSSVMAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 SDFALSFSKMTFPHQLMRVILLEQIYRSYRIIQGEPYH 158
>gi|317052397|ref|YP_004113513.1| hypothetical protein Selin_2237 [Desulfurispirillum indicum S5]
gi|316947481|gb|ADU66957.1| protein of unknown function DUF163 [Desulfurispirillum indicum S5]
Length = 156
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNI 137
R+++ GK R+ +Q +V +Y G++ E +++ +G A I K E ++
Sbjct: 4 RLLSTGKIRNKHIQALVADYEGRIHRMVPFESVEIADEKIQSGRPVAAIQKAEGERLLKK 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I +D V+LDE G + S ++A + S I FCIGG GHG +++ RA+ +
Sbjct: 64 IPADACTVVLDEKGKQLSSVELANWIQGMESRYREMI-FCIGGALGHGEEVKARADCLLS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS+M + H +A L VEQLYR++ I KG YH+
Sbjct: 123 LSAMTMTHTMARLFAVEQLYRAFAIQKGLPYHN 155
>gi|427387711|ref|ZP_18883696.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
oleiciplenus YIT 12058]
gi|425725110|gb|EKU87983.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
oleiciplenus YIT 12058]
Length = 157
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNI 137
++ VG+ +++Y+ + K Y D+++ KNT + +++ E +
Sbjct: 5 LLVVGRTVEQHFITAINDYVQRTKRYLSF-DMEVIPELKNTKSLSMEVQKEKEGELICKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
D +V+LDE G ++ S + A+ M +T R+ F IGGPYG K+ + A+ +
Sbjct: 64 FQPGDVIVLLDEGGKEMRSIEFADYMKRKMNTVNKRLVFVIGGPYGFSQKVYQAAHEKMS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ IL G YHH
Sbjct: 124 LSKMTFSHQMVRLIFVEQLYRAMNILNGGPYHH 156
>gi|303236381|ref|ZP_07322971.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella disiens FB035-09AN]
gi|302483439|gb|EFL46444.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella disiens FB035-09AN]
Length = 156
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ + +I VGK + + +Y+ ++ +Y + + N K + + + K+ ++
Sbjct: 1 MKVTLILVGKTTNDIFVRGIADYVERISHYLPFTITTIPELKNTKKLSEAQQKEKEGEL- 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + D VV+LDE+G + S A+ + +T A R+ F IGG YG + +RAN
Sbjct: 60 ILKEIQTADTVVLLDEHGKEFRSVDYADWLQKKQNT-AKRLVFVIGGAYGFSKAVYDRAN 118
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ VEQLYR+ TI+KG+ YHH
Sbjct: 119 EKISLSKMTFSHQMVRLIFVEQLYRACTIIKGEPYHH 155
>gi|29377485|ref|NP_816639.1| hypothetical protein EF3025 [Enterococcus faecalis V583]
gi|227554451|ref|ZP_03984498.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
HH22]
gi|229547543|ref|ZP_04436268.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
TX1322]
gi|255970767|ref|ZP_05421353.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255974339|ref|ZP_05424925.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618212|ref|ZP_05475058.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256854706|ref|ZP_05560070.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958310|ref|ZP_05562481.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960393|ref|ZP_05564564.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962876|ref|ZP_05567047.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257078380|ref|ZP_05572741.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257080560|ref|ZP_05574921.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083295|ref|ZP_05577656.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257088149|ref|ZP_05582510.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257417176|ref|ZP_05594170.1| UPF0247 protein [Enterococcus faecalis ARO1/DG]
gi|257420502|ref|ZP_05597492.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293383894|ref|ZP_06629797.1| alpha/beta knot family protein [Enterococcus faecalis R712]
gi|293388288|ref|ZP_06632803.1| alpha/beta knot family protein [Enterococcus faecalis S613]
gi|294780161|ref|ZP_06745533.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis PC1.1]
gi|300861677|ref|ZP_07107761.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis TUSoD Ef11]
gi|307270466|ref|ZP_07551766.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX4248]
gi|307273900|ref|ZP_07555113.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0855]
gi|307276740|ref|ZP_07557856.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX2134]
gi|307278174|ref|ZP_07559256.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0860]
gi|307286437|ref|ZP_07566543.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0109]
gi|307292048|ref|ZP_07571916.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0411]
gi|312902041|ref|ZP_07761302.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0470]
gi|312906765|ref|ZP_07765765.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
DAPTO 512]
gi|312910697|ref|ZP_07769537.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
DAPTO 516]
gi|312953134|ref|ZP_07771982.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0102]
gi|384514268|ref|YP_005709361.1| alpha/beta knot family protein [Enterococcus faecalis OG1RF]
gi|397701179|ref|YP_006538967.1| hypothetical protein EFD32_2608 [Enterococcus faecalis D32]
gi|421514345|ref|ZP_15961035.1| methyltransferase RlmH ybeA [Enterococcus faecalis ATCC 29212]
gi|422687091|ref|ZP_16745281.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX4000]
gi|422692344|ref|ZP_16750365.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0031]
gi|422693668|ref|ZP_16751677.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX4244]
gi|422700526|ref|ZP_16758373.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1342]
gi|422704025|ref|ZP_16761840.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1302]
gi|422707948|ref|ZP_16765482.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0043]
gi|422708881|ref|ZP_16766400.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0027]
gi|422713967|ref|ZP_16770715.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0309A]
gi|422718408|ref|ZP_16775061.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0309B]
gi|422719058|ref|ZP_16775708.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0017]
gi|422722236|ref|ZP_16778806.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX2137]
gi|422727579|ref|ZP_16784019.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0312]
gi|422730411|ref|ZP_16786803.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0012]
gi|422735968|ref|ZP_16792233.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1341]
gi|422742021|ref|ZP_16796042.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX2141]
gi|422869612|ref|ZP_16916129.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis TX1467]
gi|424670931|ref|ZP_18107947.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis 599]
gi|424758989|ref|ZP_18186662.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis R508]
gi|428768150|ref|YP_007154261.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
str. Symbioflor 1]
gi|430360093|ref|ZP_19426070.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
OG1X]
gi|430366123|ref|ZP_19427304.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
M7]
gi|32171776|sp|P59732.1|RLMH_ENTFA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|29344952|gb|AAO82709.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
V583]
gi|227176361|gb|EEI57333.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
HH22]
gi|229307385|gb|EEN73372.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
TX1322]
gi|255961785|gb|EET94261.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255967211|gb|EET97833.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256597739|gb|EEU16915.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256710266|gb|EEU25310.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256948806|gb|EEU65438.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256950889|gb|EEU67521.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953372|gb|EEU70004.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256986410|gb|EEU73712.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256988590|gb|EEU75892.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991325|gb|EEU78627.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256996179|gb|EEU83481.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257159004|gb|EEU88964.1| UPF0247 protein [Enterococcus faecalis ARO1/DG]
gi|257162326|gb|EEU92286.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291078753|gb|EFE16117.1| alpha/beta knot family protein [Enterococcus faecalis R712]
gi|291082330|gb|EFE19293.1| alpha/beta knot family protein [Enterococcus faecalis S613]
gi|294452704|gb|EFG21134.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis PC1.1]
gi|300849138|gb|EFK76891.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis TUSoD Ef11]
gi|306496894|gb|EFM66443.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0411]
gi|306502450|gb|EFM71723.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0109]
gi|306505163|gb|EFM74351.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0860]
gi|306506582|gb|EFM75736.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX2134]
gi|306509422|gb|EFM78479.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX0855]
gi|306513194|gb|EFM81826.1| hypothetical protein TIGR00246 [Enterococcus faecalis TX4248]
gi|310627413|gb|EFQ10696.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
DAPTO 512]
gi|310628934|gb|EFQ12217.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0102]
gi|311289010|gb|EFQ67566.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
DAPTO 516]
gi|311290823|gb|EFQ69379.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0470]
gi|315027694|gb|EFT39626.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX2137]
gi|315028225|gb|EFT40157.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX4000]
gi|315033630|gb|EFT45562.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0017]
gi|315036543|gb|EFT48475.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0027]
gi|315143290|gb|EFT87306.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX2141]
gi|315148925|gb|EFT92941.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX4244]
gi|315149102|gb|EFT93118.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0012]
gi|315152941|gb|EFT96957.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0031]
gi|315154842|gb|EFT98858.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0043]
gi|315157499|gb|EFU01516.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0312]
gi|315164477|gb|EFU08494.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1302]
gi|315167261|gb|EFU11278.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1341]
gi|315171067|gb|EFU15084.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1342]
gi|315573365|gb|EFU85556.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0309B]
gi|315581079|gb|EFU93270.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0309A]
gi|327536157|gb|AEA94991.1| alpha/beta knot family protein [Enterococcus faecalis OG1RF]
gi|329571168|gb|EGG52874.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis TX1467]
gi|397337818|gb|AFO45490.1| hypothetical protein EFD32_2608 [Enterococcus faecalis D32]
gi|401672563|gb|EJS79031.1| methyltransferase RlmH ybeA [Enterococcus faecalis ATCC 29212]
gi|402359786|gb|EJU94407.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis 599]
gi|402405410|gb|EJV38002.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis R508]
gi|427186323|emb|CCO73547.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
str. Symbioflor 1]
gi|429513005|gb|ELA02598.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
OG1X]
gi|429517137|gb|ELA06604.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
M7]
Length = 159
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I+++TVGK + + ++EY+ +L Y K+E +++ P+ D + Q+K+ E
Sbjct: 1 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +++V +L NG + SE+ ++ + G +G S ++F IGG G + +R
Sbjct: 61 QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N I + HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 121 SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYH 158
>gi|325678905|ref|ZP_08158503.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Ruminococcus albus 8]
gi|324109409|gb|EGC03627.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Ruminococcus albus 8]
Length = 161
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGD--VKAQIKDEDMA 133
+ +ITVGK + + EY+ +L +CKVE ++L P + D +++ ++ E A
Sbjct: 4 VNLITVGKLKEKYWRDAAAEYVKRLGAFCKVEIVELNECRLPDSPSDKEIQSALESEAAA 63
Query: 134 VMNIISSDD-WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + + + + + G + SE+++ M D G+ G S ++F IG +G P +++RA
Sbjct: 64 MQKYLDVNGAYNIAMCIEGKQLTSEELSAAMTDCGTRGYSTLNFIIGSSFGIAPAVKQRA 123
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + +S M HQ+A ++L+EQ+YR + I KG YH
Sbjct: 124 DMKLSMSKMTFPHQLARILLLEQIYRGFRIEKGSKYH 160
>gi|300772626|ref|ZP_07082496.1| alpha/beta knot family protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300760929|gb|EFK57755.1| alpha/beta knot family protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 157
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I VGK + +++Y +LK+Y + DL+ N KN +AQ K++
Sbjct: 1 MKITLICVGKTDEKYLNEGIEKYTSRLKHYITFGIVIIPDLK---NSKNMS--QAQQKEK 55
Query: 131 DMA-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
+ A ++ IS D VV+LDE G + S + + + F IGGPYG +
Sbjct: 56 EAALILKHISPQDTVVLLDEYGKEYRSVDFSRYLEKNMLNSTQHLVFVIGGPYGFDQTIY 115
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+R+ + LS M +HQ+ L VEQ+YR+++ILKG+ YHH
Sbjct: 116 DRSVQKLSLSKMTFSHQMIRLFFVEQVYRAFSILKGEPYHH 156
>gi|153812746|ref|ZP_01965414.1| hypothetical protein RUMOBE_03153 [Ruminococcus obeum ATCC 29174]
gi|149831106|gb|EDM86195.1| rRNA large subunit m3Psi methyltransferase RlmH [Ruminococcus obeum
ATCC 29174]
Length = 159
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I++ITVGK + + + EY +L YCK+ Q+ P D + QIK+ E
Sbjct: 1 MEIKIITVGKIKEKYLNDGIAEYAKRLSRYCKLTFCQVPDEKTPDKASDALNEQIKNTEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M I D+V+ L +G + S +++E +G G G S ++F IGG G G ++ +R
Sbjct: 61 ERLMKHIREQDYVIALAIDGKMLDSVELSEKIGRLGVEGKSSVAFVIGGSLGLGNEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + IL + YH
Sbjct: 121 ADYKLSFSRMTFPHQLMQMILLEQIYRGYRILNHEPYH 158
>gi|343526151|ref|ZP_08763102.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343395041|gb|EGV07587.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 159
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +LK++ K E ++L P ++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYAKRLKHFTKFELIELLDEKTPDKASYLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++++ D G S I+F IGG G +++R
Sbjct: 61 NRILSKITDKEFVIALAIEGQQFPSEEFSKILSDITIRGISNITFVIGGSLGLSNAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|403387148|ref|ZP_10929205.1| rRNA large subunit methyltransferase [Clostridium sp. JC122]
Length = 159
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I V++VGK + ++L +DEY +L YCK++ ++L P N + IK+ E
Sbjct: 1 MNITVVSVGKLKEKYLKLAIDEYSKRLSRYCKLDIIELPDEKTPDNASKKEELAIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ LD G I SE++A + D G G S I F IGG G + +R
Sbjct: 61 QNILKHIKDNSYVIALDLKGEMISSEKLASYIKDLGVRGNSNIVFVIGGSLGISESVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQIYRAYRINNNEPYH 158
>gi|212694165|ref|ZP_03302293.1| hypothetical protein BACDOR_03691 [Bacteroides dorei DSM 17855]
gi|237710200|ref|ZP_04540681.1| UPF0247 protein [Bacteroides sp. 9_1_42FAA]
gi|265751008|ref|ZP_06087071.1| UPF0247 protein [Bacteroides sp. 3_1_33FAA]
gi|345515009|ref|ZP_08794515.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
5_1_36/D4]
gi|423239464|ref|ZP_17220580.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
CL03T12C01]
gi|212663385|gb|EEB23959.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides dorei DSM 17855]
gi|229434558|gb|EEO44635.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
5_1_36/D4]
gi|229455662|gb|EEO61383.1| UPF0247 protein [Bacteroides sp. 9_1_42FAA]
gi|263237904|gb|EEZ23354.1| UPF0247 protein [Bacteroides sp. 3_1_33FAA]
gi|392646198|gb|EIY39915.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
CL03T12C01]
Length = 157
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNIISSDDWVVMLDENGL 152
+++Y+ + K++ D+++ KNT ++ + Q + E ++ + D VV+LDE+G
Sbjct: 20 INDYVERTKHFISF-DMEVIPELKNTKNLSMEQQKEKEGELILKALLPGDAVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
+ S + A + T R+ F IGGPYG PK+ + I LS M +HQ+ L+
Sbjct: 79 EFRSVEFANWIERKMHTVNKRLVFIIGGPYGFAPKIYDVTQEKISLSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQLYR+ TIL YHH
Sbjct: 139 VEQLYRAMTILNNGPYHH 156
>gi|399516299|ref|ZP_10757908.1| LSU m3Psi1915 methyltransferase RlmH ## ybeA [Leuconostoc
pseudomesenteroides 4882]
gi|398648842|emb|CCJ65935.1| LSU m3Psi1915 methyltransferase RlmH ## ybeA [Leuconostoc
pseudomesenteroides 4882]
Length = 159
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQI-KDEDMA 133
I++ITVGK + ++ + EY +L + KV +++ R+ K + QI E
Sbjct: 3 IKIITVGKLKEQYLKYGIAEYTKRLSRFAKVHLIEVPDERTPEKASEAENTQIMAKEGQR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I + D+V++L G + SE AE M G S ++F IGG G P+++ RAN
Sbjct: 63 IQEKIGARDYVIVLAIEGKQLPSEVFAEKMNQITVDGYSDVTFIIGGSLGLSPEVKHRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 123 FKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|389818787|ref|ZP_10208962.1| hypothetical protein A1A1_13077 [Planococcus antarcticus DSM 14505]
gi|388463697|gb|EIM06044.1| hypothetical protein A1A1_13077 [Planococcus antarcticus DSM 14505]
Length = 159
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMA 133
I +I+VGK + ++ ++EYI +L Y K+ ++++ P+ D +I K E
Sbjct: 3 ISIISVGKLKEKYLKSGIEEYIKRLGSYSKINEIEVADEKAPEQLSDADMEIVKKKEADR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D +V+ L +G SEQ+A+ + + G S+I F IGG G ++ +RA+
Sbjct: 63 ILAKISPDAFVIALAIDGKMKTSEQLAKDIESLMTYGRSKIVFVIGGSLGLHDEVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I+KG+ YH
Sbjct: 123 EKLSFSKMTFPHQLMKLILVEQVYRAFRIMKGEPYH 158
>gi|385260420|ref|ZP_10038566.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
SK140]
gi|385191264|gb|EIF38680.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus sp.
SK140]
Length = 159
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM--- 132
+ I+V+TVGK + ++ + EY ++ + +E ++L + T D ++ +++ +
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFANLEIIEL--ADEKTQDRASESENQKILEL 58
Query: 133 ---AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
++ + D+VV+L G SE+ ++ + A G S I+F IGG G P+++
Sbjct: 59 EGNRILAKVGERDFVVVLAIEGTTFSSEEFSKQLERASINGFSTITFIIGGSLGLSPEVK 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+RAN+S+ + L HQ+ LVLVEQ+YR+++I +G YH
Sbjct: 119 KRANLSVSFGRLTLPHQLMRLVLVEQIYRAFSIQQGSPYH 158
>gi|414156514|ref|ZP_11412816.1| ribosomal RNA large subunit methyltransferase H [Streptococcus sp.
F0442]
gi|410870161|gb|EKS18120.1| ribosomal RNA large subunit methyltransferase H [Streptococcus sp.
F0442]
Length = 159
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EYI +L + KVE ++L P ++ Q ++ E
Sbjct: 1 MKIKLITVGKLKEKYLKDGIAEYIKRLGRFAKVEQIELVDEKTPDRASQLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS ++V++L G SE+ ++ + ++G S ++F IGG G ++++R
Sbjct: 61 ERILSKISDKEYVIVLAIEGKQFPSEKFSQTIDQIMTSGYSNLTFVIGGSLGLSIEVKQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 GNLLMSFGQLTLPHQLMKLVLVEQIYRAFMIKQGSPYH 158
>gi|392389429|ref|YP_006426032.1| hypothetical protein Ornrh_0005 [Ornithobacterium rhinotracheale
DSM 15997]
gi|390520507|gb|AFL96238.1| hypothetical protein Ornrh_0005 [Ornithobacterium rhinotracheale
DSM 15997]
Length = 157
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I+ D VV+LDE G + S++ AE + + F +GGPYG M +R N SI
Sbjct: 64 INPTDCVVLLDERGKEYSSKKFAEWIQTQVMAAVGHLVFVVGGPYGFSTSMYQRGNASIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M HQ+ L EQ+YR++TIL+G++YHH
Sbjct: 124 LSKMTFTHQMVRLFFTEQVYRAYTILEGKSYHH 156
>gi|417922990|ref|ZP_12566469.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK569]
gi|342837398|gb|EGU71587.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
mitis SK569]
Length = 159
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K+E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKLEMIELADEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V++L G + SE+ ++ + +A G S ++ IGG G +++R
Sbjct: 61 QRILSKVGDRDFVIVLAIEGKTLSSEEFSKQLEEASIKGFSTLTLIIGGSLGLAQDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|255308686|ref|ZP_05352857.1| hypothetical protein CdifA_18991 [Clostridium difficile ATCC 43255]
Length = 159
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I ++ VGK + ++L +DE+ +L YCK+E ++L P+N + +I KD E
Sbjct: 1 MNISIVVVGKIKEKYLKLGIDEFKKRLSKYCKLEIIELDDEKAPENLSVKEMEIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ L +G + SE++A+ M D G S + F IGG G ++ R
Sbjct: 61 KKILGKIKHNSYVIALAIDGKGLSSEELAKTMSDLAVRGNSSLCFIIGGSLGLSDEVLGR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I G+ YH
Sbjct: 121 ADYRLSFSKMTFPHQMMRLILLEQIYRAYRINNGEPYH 158
>gi|336399266|ref|ZP_08580066.1| Ribosomal RNA large subunit methyltransferase H [Prevotella
multisaccharivorax DSM 17128]
gi|336069002|gb|EGN57636.1| Ribosomal RNA large subunit methyltransferase H [Prevotella
multisaccharivorax DSM 17128]
Length = 156
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVMNI 137
+I +GK Q +D+Y ++ +Y +++ + KNT + Q + E ++N
Sbjct: 5 LILMGKTDGKLYQTAIDDYAARIAHYMPFA-VKVIPDIKNTRTLSEDQQKEREGQLILNQ 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+++ D +V+LDE+G + A +G ++G + + IGGPYG + RA+ +
Sbjct: 64 VTAQDSLVLLDEHGEERRGLDFARWLGKRQASGRN-LVLVIGGPYGFSEAVYRRADEMVS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+L EQLYR+ TILKG+ YHH
Sbjct: 123 LSHMTFSHQMVRLILAEQLYRACTILKGEKYHH 155
>gi|15902041|ref|NP_346645.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
TIGR4]
gi|15904085|ref|NP_359635.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae R6]
gi|111658632|ref|ZP_01409282.1| hypothetical protein SpneT_02000222 [Streptococcus pneumoniae
TIGR4]
gi|116515560|ref|YP_817446.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae D39]
gi|148984542|ref|ZP_01817830.1| hypothetical protein CGSSp3BS71_10823 [Streptococcus pneumoniae
SP3-BS71]
gi|148993610|ref|ZP_01823081.1| hypothetical protein CGSSp9BS68_11977 [Streptococcus pneumoniae
SP9-BS68]
gi|148997960|ref|ZP_01825473.1| hypothetical protein CGSSp11BS70_05155 [Streptococcus pneumoniae
SP11-BS70]
gi|149007719|ref|ZP_01831328.1| hypothetical protein CGSSp18BS74_00085 [Streptococcus pneumoniae
SP18-BS74]
gi|149013386|ref|ZP_01834095.1| hypothetical protein CGSSp19BS75_00235 [Streptococcus pneumoniae
SP19-BS75]
gi|149020156|ref|ZP_01835130.1| hypothetical protein CGSSp23BS72_08974 [Streptococcus pneumoniae
SP23-BS72]
gi|168484310|ref|ZP_02709262.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168487218|ref|ZP_02711726.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|168489310|ref|ZP_02713509.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168491768|ref|ZP_02715911.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168494002|ref|ZP_02718145.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|168576108|ref|ZP_02722013.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|182685174|ref|YP_001836921.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
CGSP14]
gi|194397031|ref|YP_002038834.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae G54]
gi|221232936|ref|YP_002512090.1| hypothetical protein SPN23F_22710 [Streptococcus pneumoniae ATCC
700669]
gi|225855732|ref|YP_002737244.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae JJA]
gi|225857806|ref|YP_002739317.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
P1031]
gi|225860009|ref|YP_002741519.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
70585]
gi|225862054|ref|YP_002743563.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|237651051|ref|ZP_04525303.1| SPOUT methyltransferase superfamily protein [Streptococcus
pneumoniae CCRI 1974]
gi|237821164|ref|ZP_04597009.1| SPOUT methyltransferase superfamily protein [Streptococcus
pneumoniae CCRI 1974M2]
gi|298229489|ref|ZP_06963170.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255941|ref|ZP_06979527.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501754|ref|YP_003723694.1| SPOUT methyltransferase superfamily protein [Streptococcus
pneumoniae TCH8431/19A]
gi|303254899|ref|ZP_07340984.1| SPOUT methyltransferase superfamily protein [Streptococcus
pneumoniae BS455]
gi|303259724|ref|ZP_07345700.1| hypothetical protein CGSSp9vBS293_08904 [Streptococcus pneumoniae
SP-BS293]
gi|303262191|ref|ZP_07348136.1| hypothetical protein CGSSp14BS292_06114 [Streptococcus pneumoniae
SP14-BS292]
gi|303264626|ref|ZP_07350545.1| hypothetical protein CGSSpBS397_01735 [Streptococcus pneumoniae
BS397]
gi|303266065|ref|ZP_07351959.1| hypothetical protein CGSSpBS457_07793 [Streptococcus pneumoniae
BS457]
gi|303268473|ref|ZP_07354267.1| hypothetical protein CGSSpBS458_07014 [Streptococcus pneumoniae
BS458]
gi|307068850|ref|YP_003877816.1| hypothetical protein SPAP_2287 [Streptococcus pneumoniae AP200]
gi|307128501|ref|YP_003880532.1| hypothetical protein SP670_2382 [Streptococcus pneumoniae 670-6B]
gi|387627361|ref|YP_006063537.1| hypothetical protein INV104_19400 [Streptococcus pneumoniae INV104]
gi|387758381|ref|YP_006065360.1| hypothetical protein SPNOXC_19800 [Streptococcus pneumoniae OXC141]
gi|387760311|ref|YP_006067289.1| hypothetical protein SPNINV200_20480 [Streptococcus pneumoniae
INV200]
gi|387789276|ref|YP_006254344.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
ST556]
gi|405761847|ref|YP_006702443.1| hypothetical protein SPNA45_02088 [Streptococcus pneumoniae SPNA45]
gi|410477574|ref|YP_006744333.1| alpha/beta knot family protein [Streptococcus pneumoniae
gamPNI0373]
gi|415701611|ref|ZP_11458434.1| hypothetical protein CGSSp4595_2267 [Streptococcus pneumoniae
459-5]
gi|415750533|ref|ZP_11478375.1| hypothetical protein CGSSpSV35_2133 [Streptococcus pneumoniae SV35]
gi|415753431|ref|ZP_11480413.1| hypothetical protein CGSSpSV36_2039 [Streptococcus pneumoniae SV36]
gi|417313706|ref|ZP_12100415.1| hypothetical protein SPAR5_2165 [Streptococcus pneumoniae GA04375]
gi|417677958|ref|ZP_12327361.1| hypothetical protein SPAR148_2221 [Streptococcus pneumoniae
GA17545]
gi|417680216|ref|ZP_12329609.1| hypothetical protein SPAR50_2307 [Streptococcus pneumoniae GA17570]
gi|417685466|ref|ZP_12334747.1| hypothetical protein SPAR68_0018 [Streptococcus pneumoniae GA41301]
gi|417695115|ref|ZP_12344299.1| hypothetical protein SPAR120_2231 [Streptococcus pneumoniae
GA47901]
gi|417697434|ref|ZP_12346609.1| hypothetical protein SPAR93_2371 [Streptococcus pneumoniae GA47368]
gi|417699616|ref|ZP_12348784.1| hypothetical protein SPAR69_2231 [Streptococcus pneumoniae GA41317]
gi|418072876|ref|ZP_12710140.1| hypothetical protein SPAR19_0013 [Streptococcus pneumoniae GA11184]
gi|418077473|ref|ZP_12714702.1| hypothetical protein SPAR98_2458 [Streptococcus pneumoniae GA47502]
gi|418079692|ref|ZP_12716911.1| hypothetical protein SPAR123_2199 [Streptococcus pneumoniae
4027-06]
gi|418081896|ref|ZP_12719102.1| hypothetical protein SPAR121_2252 [Streptococcus pneumoniae
6735-05]
gi|418084064|ref|ZP_12721256.1| hypothetical protein SPAR81_2213 [Streptococcus pneumoniae GA44288]
gi|418086226|ref|ZP_12723401.1| hypothetical protein SPAR90_2186 [Streptococcus pneumoniae GA47281]
gi|418087777|ref|ZP_12724942.1| hypothetical protein SPAR87_1620 [Streptococcus pneumoniae GA47033]
gi|418090617|ref|ZP_12727767.1| hypothetical protein SPAR77_2275 [Streptococcus pneumoniae GA43265]
gi|418092858|ref|ZP_12729994.1| hypothetical protein SPAR84_2286 [Streptococcus pneumoniae GA44452]
gi|418095044|ref|ZP_12732167.1| hypothetical protein SPAR110_2233 [Streptococcus pneumoniae
GA49138]
gi|418097374|ref|ZP_12734479.1| hypothetical protein SPAR40_2361 [Streptococcus pneumoniae GA16531]
gi|418099578|ref|ZP_12736671.1| hypothetical protein SPAR122_2223 [Streptococcus pneumoniae
6901-05]
gi|418101720|ref|ZP_12738799.1| hypothetical protein SPAR128_2206 [Streptococcus pneumoniae
7286-06]
gi|418103976|ref|ZP_12741044.1| hypothetical protein SPAR143_2308 [Streptococcus pneumoniae NP070]
gi|418106381|ref|ZP_12743431.1| hypothetical protein SPAR85_2361 [Streptococcus pneumoniae GA44500]
gi|418108908|ref|ZP_12745941.1| hypothetical protein SPAR70_2509 [Streptococcus pneumoniae GA41410]
gi|418111234|ref|ZP_12748249.1| hypothetical protein SPAR113_2379 [Streptococcus pneumoniae
GA49447]
gi|418113574|ref|ZP_12750570.1| hypothetical protein SPAR72_2321 [Streptococcus pneumoniae GA41538]
gi|418115758|ref|ZP_12752741.1| hypothetical protein SPAR125_2228 [Streptococcus pneumoniae
5787-06]
gi|418117927|ref|ZP_12754893.1| hypothetical protein SPAR124_2207 [Streptococcus pneumoniae
6963-05]
gi|418119647|ref|ZP_12756598.1| hypothetical protein SPAR54_1742 [Streptococcus pneumoniae GA18523]
gi|418122315|ref|ZP_12759255.1| hypothetical protein SPAR80_2244 [Streptococcus pneumoniae GA44194]
gi|418124611|ref|ZP_12761538.1| hypothetical protein SPAR82_2355 [Streptococcus pneumoniae GA44378]
gi|418126891|ref|ZP_12763793.1| hypothetical protein SPAR86_2316 [Streptococcus pneumoniae GA44511]
gi|418129151|ref|ZP_12766039.1| hypothetical protein SPAR144_2293 [Streptococcus pneumoniae NP170]
gi|418131408|ref|ZP_12768288.1| hypothetical protein SPAR14_2273 [Streptococcus pneumoniae GA07643]
gi|418133698|ref|ZP_12770564.1| hypothetical protein SPAR22_2334 [Streptococcus pneumoniae GA11304]
gi|418136024|ref|ZP_12772873.1| hypothetical protein SPAR23_2364 [Streptococcus pneumoniae GA11426]
gi|418138355|ref|ZP_12775189.1| hypothetical protein SPAR24_2323 [Streptococcus pneumoniae GA11663]
gi|418140582|ref|ZP_12777403.1| hypothetical protein SPAR28_2275 [Streptococcus pneumoniae GA13338]
gi|418142786|ref|ZP_12779593.1| hypothetical protein SPAR30_2231 [Streptococcus pneumoniae GA13455]
gi|418144851|ref|ZP_12781646.1| hypothetical protein SPAR31_2053 [Streptococcus pneumoniae GA13494]
gi|418147499|ref|ZP_12784270.1| hypothetical protein SPAR32_2333 [Streptococcus pneumoniae GA13637]
gi|418149575|ref|ZP_12786334.1| hypothetical protein SPAR34_2123 [Streptococcus pneumoniae GA13856]
gi|418151752|ref|ZP_12788494.1| hypothetical protein SPAR37_2233 [Streptococcus pneumoniae GA14798]
gi|418154023|ref|ZP_12790757.1| hypothetical protein SPAR38_2335 [Streptococcus pneumoniae GA16121]
gi|418156208|ref|ZP_12792929.1| hypothetical protein SPAR39_2229 [Streptococcus pneumoniae GA16242]
gi|418158620|ref|ZP_12795329.1| hypothetical protein SPAR41_2461 [Streptococcus pneumoniae GA16833]
gi|418160986|ref|ZP_12797682.1| hypothetical protein SPAR43_2393 [Streptococcus pneumoniae GA17227]
gi|418163351|ref|ZP_12800029.1| hypothetical protein SPAR49_2403 [Streptococcus pneumoniae GA17328]
gi|418165563|ref|ZP_12802225.1| hypothetical protein SPAR45_2242 [Streptococcus pneumoniae GA17371]
gi|418167905|ref|ZP_12804555.1| hypothetical protein SPAR52_2399 [Streptococcus pneumoniae GA17971]
gi|418168173|ref|ZP_12804819.1| hypothetical protein SPAR56_0260 [Streptococcus pneumoniae GA19077]
gi|418172396|ref|ZP_12809013.1| hypothetical protein SPAR58_2223 [Streptococcus pneumoniae GA19451]
gi|418174674|ref|ZP_12811280.1| hypothetical protein SPAR67_2347 [Streptococcus pneumoniae GA41277]
gi|418177060|ref|ZP_12813647.1| hypothetical protein SPAR71_2362 [Streptococcus pneumoniae GA41437]
gi|418179386|ref|ZP_12815963.1| hypothetical protein SPAR73_2384 [Streptococcus pneumoniae GA41565]
gi|418181608|ref|ZP_12818173.1| hypothetical protein SPAR74_2279 [Streptococcus pneumoniae GA41688]
gi|418183791|ref|ZP_12820345.1| hypothetical protein SPAR78_2233 [Streptococcus pneumoniae GA43380]
gi|418186011|ref|ZP_12822546.1| hypothetical protein SPAR91_2264 [Streptococcus pneumoniae GA47283]
gi|418188237|ref|ZP_12824755.1| hypothetical protein SPAR92_2273 [Streptococcus pneumoniae GA47360]
gi|418188260|ref|ZP_12824776.1| hypothetical protein SPAR94_0006 [Streptococcus pneumoniae GA47373]
gi|418192685|ref|ZP_12829184.1| hypothetical protein SPAR96_2285 [Streptococcus pneumoniae GA47388]
gi|418194792|ref|ZP_12831278.1| hypothetical protein SPAR119_2141 [Streptococcus pneumoniae
GA47439]
gi|418196910|ref|ZP_12833380.1| hypothetical protein SPAR103_2174 [Streptococcus pneumoniae
GA47688]
gi|418199098|ref|ZP_12835550.1| hypothetical protein SPAR106_2246 [Streptococcus pneumoniae
GA47778]
gi|418201218|ref|ZP_12837657.1| hypothetical protein SPAR109_2228 [Streptococcus pneumoniae
GA47976]
gi|418203502|ref|ZP_12839923.1| hypothetical protein SPAR115_2283 [Streptococcus pneumoniae
GA52306]
gi|418215444|ref|ZP_12842175.1| hypothetical protein SPAR118_2310 [Streptococcus pneumoniae
GA54644]
gi|418217701|ref|ZP_12844375.1| hypothetical protein SPAR147_2221 [Streptococcus pneumoniae
Netherlands15B-37]
gi|418220003|ref|ZP_12846664.1| hypothetical protein SPAR145_2344 [Streptococcus pneumoniae NP127]
gi|418222296|ref|ZP_12848945.1| hypothetical protein SPAR104_2288 [Streptococcus pneumoniae
GA47751]
gi|418224453|ref|ZP_12851088.1| hypothetical protein SPAR127_2230 [Streptococcus pneumoniae
5185-06]
gi|418226609|ref|ZP_12853233.1| hypothetical protein SPAR141_2192 [Streptococcus pneumoniae NP112]
gi|418228739|ref|ZP_12855352.1| hypothetical protein SPAR135_2180 [Streptococcus pneumoniae
3063-00]
gi|418231075|ref|ZP_12857669.1| hypothetical protein SPAR136_2385 [Streptococcus pneumoniae
EU-NP01]
gi|418233218|ref|ZP_12859801.1| hypothetical protein SPAR13_2198 [Streptococcus pneumoniae GA07228]
gi|418235425|ref|ZP_12861998.1| hypothetical protein SPAR17_2285 [Streptococcus pneumoniae GA08780]
gi|418237532|ref|ZP_12864095.1| hypothetical protein SPAR59_2142 [Streptococcus pneumoniae GA19690]
gi|418239788|ref|ZP_12866334.1| hypothetical protein SPAR146_2305 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419423972|ref|ZP_13964180.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA43264]
gi|419426194|ref|ZP_13966385.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 7533-05]
gi|419428304|ref|ZP_13968481.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 5652-06]
gi|419432634|ref|ZP_13972759.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP05]
gi|419434866|ref|ZP_13974980.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40183]
gi|419437058|ref|ZP_13977139.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 8190-05]
gi|419439230|ref|ZP_13979292.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13499]
gi|419441440|ref|ZP_13981480.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40410]
gi|419443646|ref|ZP_13983666.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13224]
gi|419445765|ref|ZP_13985776.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA19923]
gi|419447928|ref|ZP_13987929.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 7879-04]
gi|419452170|ref|ZP_13992150.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP02]
gi|419454315|ref|ZP_13994282.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP03]
gi|419456496|ref|ZP_13996450.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP04]
gi|419458782|ref|ZP_13998721.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02254]
gi|419461081|ref|ZP_14001003.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02270]
gi|419463399|ref|ZP_14003298.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02714]
gi|419465487|ref|ZP_14005375.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA04175]
gi|419467911|ref|ZP_14007789.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA05248]
gi|419470042|ref|ZP_14009906.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA06083]
gi|419472124|ref|ZP_14011979.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA07914]
gi|419474326|ref|ZP_14014171.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13430]
gi|419476632|ref|ZP_14016463.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA14688]
gi|419478898|ref|ZP_14018717.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA18068]
gi|419481054|ref|ZP_14020855.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA19101]
gi|419483263|ref|ZP_14023044.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40563]
gi|419485458|ref|ZP_14025229.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA43257]
gi|419486339|ref|ZP_14026106.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA44128]
gi|419489921|ref|ZP_14029666.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA44386]
gi|419492170|ref|ZP_14031901.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47179]
gi|419494357|ref|ZP_14034079.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47210]
gi|419496432|ref|ZP_14036146.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47461]
gi|419498615|ref|ZP_14038317.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47522]
gi|419500753|ref|ZP_14040444.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47597]
gi|419502903|ref|ZP_14042581.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47628]
gi|419504961|ref|ZP_14044624.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47760]
gi|419507103|ref|ZP_14046761.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA49194]
gi|419509323|ref|ZP_14048971.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA49542]
gi|419511425|ref|ZP_14051063.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae NP141]
gi|419513626|ref|ZP_14053256.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA05578]
gi|419515734|ref|ZP_14055356.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae England14-9]
gi|419517839|ref|ZP_14057451.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02506]
gi|419519963|ref|ZP_14059566.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA08825]
gi|419522194|ref|ZP_14061785.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA05245]
gi|419524693|ref|ZP_14064262.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13723]
gi|419527000|ref|ZP_14066551.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA14373]
gi|419531274|ref|ZP_14070797.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40028]
gi|419533437|ref|ZP_14072949.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47794]
gi|419535747|ref|ZP_14075241.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA17457]
gi|421209942|ref|ZP_15666951.1| hypothetical protein AMCSP11_002165 [Streptococcus pneumoniae
2070005]
gi|421212087|ref|ZP_15669064.1| hypothetical protein AMCSP03_002155 [Streptococcus pneumoniae
2070035]
gi|421214225|ref|ZP_15671175.1| hypothetical protein AMCSP12_002157 [Streptococcus pneumoniae
2070108]
gi|421216301|ref|ZP_15673218.1| hypothetical protein AMCSP04_002051 [Streptococcus pneumoniae
2070109]
gi|421219041|ref|ZP_15675928.1| hypothetical protein AMCSP13_002728 [Streptococcus pneumoniae
2070335]
gi|421221421|ref|ZP_15678252.1| hypothetical protein AMCSP05_002194 [Streptococcus pneumoniae
2070425]
gi|421223677|ref|ZP_15680454.1| hypothetical protein AMCSP14_002148 [Streptococcus pneumoniae
2070531]
gi|421226100|ref|ZP_15682833.1| hypothetical protein AMCSP06_002277 [Streptococcus pneumoniae
2070768]
gi|421228509|ref|ZP_15685202.1| hypothetical protein AMCSP08_002368 [Streptococcus pneumoniae
2072047]
gi|421232932|ref|ZP_15689568.1| hypothetical protein AMCSP16_002138 [Streptococcus pneumoniae
2080076]
gi|421235086|ref|ZP_15691700.1| hypothetical protein AMCSP02_002114 [Streptococcus pneumoniae
2061617]
gi|421237332|ref|ZP_15693923.1| hypothetical protein AMCSP07_002177 [Streptococcus pneumoniae
2071004]
gi|421239563|ref|ZP_15696124.1| hypothetical protein AMCSP15_002177 [Streptococcus pneumoniae
2071247]
gi|421241708|ref|ZP_15698249.1| hypothetical protein AMCSP17_002155 [Streptococcus pneumoniae
2080913]
gi|421244015|ref|ZP_15700524.1| hypothetical protein AMCSP09_002260 [Streptococcus pneumoniae
2081074]
gi|421246064|ref|ZP_15702559.1| hypothetical protein AMCSP10_002086 [Streptococcus pneumoniae
2081685]
gi|421246447|ref|ZP_15702937.1| hypothetical protein AMCSP18_000377 [Streptococcus pneumoniae
2082170]
gi|421267228|ref|ZP_15718105.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR27]
gi|421269423|ref|ZP_15720285.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR95]
gi|421271680|ref|ZP_15722530.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR48]
gi|421271730|ref|ZP_15722577.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR55]
gi|421276091|ref|ZP_15726917.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA52612]
gi|421280003|ref|ZP_15730806.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA17301]
gi|421282230|ref|ZP_15733023.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA04672]
gi|421284379|ref|ZP_15735161.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA04216]
gi|421286491|ref|ZP_15737262.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA60190]
gi|421290801|ref|ZP_15741548.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA54354]
gi|421295292|ref|ZP_15746010.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA56113]
gi|421296923|ref|ZP_15747626.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA58581]
gi|421299707|ref|ZP_15750380.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA19998]
gi|421303930|ref|ZP_15754591.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA17484]
gi|421306197|ref|ZP_15756848.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA62331]
gi|421308440|ref|ZP_15759078.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA60132]
gi|421310643|ref|ZP_15761265.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA62681]
gi|421315090|ref|ZP_15765674.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47562]
gi|444383840|ref|ZP_21182018.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS8106]
gi|444385807|ref|ZP_21183876.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS8203]
gi|444386609|ref|ZP_21184636.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS125219]
gi|444391062|ref|ZP_21188975.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS70012]
gi|444393135|ref|ZP_21190794.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS81218]
gi|444396132|ref|ZP_21193666.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0002]
gi|444398523|ref|ZP_21196005.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0006]
gi|444399550|ref|ZP_21197011.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0007]
gi|444402026|ref|ZP_21199202.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0008]
gi|444404934|ref|ZP_21201868.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0009]
gi|444408140|ref|ZP_21204807.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0010]
gi|444409398|ref|ZP_21205991.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0076]
gi|444412541|ref|ZP_21208862.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0153]
gi|444415200|ref|ZP_21211443.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0199]
gi|444416876|ref|ZP_21212948.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0360]
gi|444420133|ref|ZP_21215949.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0427]
gi|444422853|ref|ZP_21218493.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0446]
gi|61250819|sp|P0A4S3.1|RLMH_STRPN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|61250822|sp|P0A4S4.1|RLMH_STRR6 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|122277708|sp|Q04HU2.1|RLMH_STRP2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|238690816|sp|B5E466.1|RLMH_STRP4 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|238691149|sp|B2INZ9.1|RLMH_STRPS RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807131|sp|C1CBL5.1|RLMH_STRP7 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807132|sp|B8ZQC9.1|RLMH_STRPJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807134|sp|C1CHN8.1|RLMH_STRZJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807135|sp|C1CNL1.1|RLMH_STRZP RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807136|sp|C1CUF5.1|RLMH_STRZT RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|1666905|gb|AAC44894.1| unknown [Streptococcus pneumoniae]
gi|2109449|gb|AAC45340.1| ORF1 [Streptococcus pneumoniae]
gi|14973749|gb|AAK76285.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|15459752|gb|AAL00846.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076136|gb|ABJ53856.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
gi|147755970|gb|EDK63013.1| hypothetical protein CGSSp11BS70_05155 [Streptococcus pneumoniae
SP11-BS70]
gi|147760714|gb|EDK67686.1| hypothetical protein CGSSp18BS74_00085 [Streptococcus pneumoniae
SP18-BS74]
gi|147762909|gb|EDK69857.1| hypothetical protein CGSSp19BS75_00235 [Streptococcus pneumoniae
SP19-BS75]
gi|147923319|gb|EDK74433.1| hypothetical protein CGSSp3BS71_10823 [Streptococcus pneumoniae
SP3-BS71]
gi|147927831|gb|EDK78853.1| hypothetical protein CGSSp9BS68_11977 [Streptococcus pneumoniae
SP9-BS68]
gi|147930834|gb|EDK81815.1| hypothetical protein CGSSp23BS72_08974 [Streptococcus pneumoniae
SP23-BS72]
gi|172042430|gb|EDT50476.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182630508|gb|ACB91456.1| hypothetical protein SPCG_2204 [Streptococcus pneumoniae CGSP14]
gi|183569892|gb|EDT90420.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183572317|gb|EDT92845.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183573985|gb|EDT94513.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183576006|gb|EDT96534.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|183578034|gb|EDT98562.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|194356698|gb|ACF55146.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
gi|220675398|emb|CAR70000.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
700669]
gi|225721050|gb|ACO16904.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225724082|gb|ACO19935.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225726029|gb|ACO21881.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225726756|gb|ACO22607.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237349|gb|ADI68480.1| SPOUT methyltransferase superfamily protein [Streptococcus
pneumoniae TCH8431/19A]
gi|301795147|emb|CBW37621.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
gi|301800970|emb|CBW33632.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
gi|301802900|emb|CBW35681.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
gi|302598170|gb|EFL65231.1| SPOUT methyltransferase superfamily protein [Streptococcus
pneumoniae BS455]
gi|302636831|gb|EFL67321.1| hypothetical protein CGSSp14BS292_06114 [Streptococcus pneumoniae
SP14-BS292]
gi|302639276|gb|EFL69735.1| hypothetical protein CGSSpBS293_08904 [Streptococcus pneumoniae
SP-BS293]
gi|302641974|gb|EFL72327.1| hypothetical protein CGSSpBS458_07014 [Streptococcus pneumoniae
BS458]
gi|302644369|gb|EFL74622.1| hypothetical protein CGSSpBS457_07793 [Streptococcus pneumoniae
BS457]
gi|302645996|gb|EFL76224.1| hypothetical protein CGSSpBS397_01735 [Streptococcus pneumoniae
BS397]
gi|306410387|gb|ADM85814.1| Uncharacterized conserved protein [Streptococcus pneumoniae AP200]
gi|306485563|gb|ADM92432.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327388982|gb|EGE87330.1| hypothetical protein SPAR5_2165 [Streptococcus pneumoniae GA04375]
gi|332071319|gb|EGI81814.1| hypothetical protein SPAR148_2221 [Streptococcus pneumoniae
GA17545]
gi|332071681|gb|EGI82174.1| hypothetical protein SPAR50_2307 [Streptococcus pneumoniae GA17570]
gi|332077804|gb|EGI88263.1| hypothetical protein SPAR68_0018 [Streptococcus pneumoniae GA41301]
gi|332198653|gb|EGJ12736.1| hypothetical protein SPAR69_2231 [Streptococcus pneumoniae GA41317]
gi|332198861|gb|EGJ12943.1| hypothetical protein SPAR93_2371 [Streptococcus pneumoniae GA47368]
gi|332199064|gb|EGJ13145.1| hypothetical protein SPAR120_2231 [Streptococcus pneumoniae
GA47901]
gi|353745435|gb|EHD26105.1| hypothetical protein SPAR123_2199 [Streptococcus pneumoniae
4027-06]
gi|353745647|gb|EHD26316.1| hypothetical protein SPAR98_2458 [Streptococcus pneumoniae GA47502]
gi|353750218|gb|EHD30860.1| hypothetical protein SPAR121_2252 [Streptococcus pneumoniae
6735-05]
gi|353753588|gb|EHD34211.1| hypothetical protein SPAR81_2213 [Streptococcus pneumoniae GA44288]
gi|353753613|gb|EHD34235.1| hypothetical protein SPAR19_0013 [Streptococcus pneumoniae GA11184]
gi|353755066|gb|EHD35676.1| hypothetical protein SPAR90_2186 [Streptococcus pneumoniae GA47281]
gi|353755454|gb|EHD36057.1| hypothetical protein SPAR87_1620 [Streptococcus pneumoniae GA47033]
gi|353759617|gb|EHD40201.1| hypothetical protein SPAR77_2275 [Streptococcus pneumoniae GA43265]
gi|353761528|gb|EHD42095.1| hypothetical protein SPAR84_2286 [Streptococcus pneumoniae GA44452]
gi|353762581|gb|EHD43140.1| hypothetical protein SPAR110_2233 [Streptococcus pneumoniae
GA49138]
gi|353765997|gb|EHD46538.1| hypothetical protein SPAR40_2361 [Streptococcus pneumoniae GA16531]
gi|353767798|gb|EHD48330.1| hypothetical protein SPAR122_2223 [Streptococcus pneumoniae
6901-05]
gi|353768819|gb|EHD49342.1| hypothetical protein SPAR128_2206 [Streptococcus pneumoniae
7286-06]
gi|353773539|gb|EHD54036.1| hypothetical protein SPAR143_2308 [Streptococcus pneumoniae NP070]
gi|353774343|gb|EHD54836.1| hypothetical protein SPAR85_2361 [Streptococcus pneumoniae GA44500]
gi|353775365|gb|EHD55846.1| hypothetical protein SPAR70_2509 [Streptococcus pneumoniae GA41410]
gi|353780345|gb|EHD60804.1| hypothetical protein SPAR113_2379 [Streptococcus pneumoniae
GA49447]
gi|353781785|gb|EHD62226.1| hypothetical protein SPAR72_2321 [Streptococcus pneumoniae GA41538]
gi|353783721|gb|EHD64148.1| hypothetical protein SPAR125_2228 [Streptococcus pneumoniae
5787-06]
gi|353787128|gb|EHD67537.1| hypothetical protein SPAR124_2207 [Streptococcus pneumoniae
6963-05]
gi|353788760|gb|EHD69156.1| hypothetical protein SPAR54_1742 [Streptococcus pneumoniae GA18523]
gi|353790644|gb|EHD71026.1| hypothetical protein SPAR80_2244 [Streptococcus pneumoniae GA44194]
gi|353794223|gb|EHD74581.1| hypothetical protein SPAR82_2355 [Streptococcus pneumoniae GA44378]
gi|353794427|gb|EHD74784.1| hypothetical protein SPAR86_2316 [Streptococcus pneumoniae GA44511]
gi|353796532|gb|EHD76872.1| hypothetical protein SPAR144_2293 [Streptococcus pneumoniae NP170]
gi|353800823|gb|EHD81132.1| hypothetical protein SPAR14_2273 [Streptococcus pneumoniae GA07643]
gi|353802487|gb|EHD82782.1| hypothetical protein SPAR30_2231 [Streptococcus pneumoniae GA13455]
gi|353803934|gb|EHD84224.1| hypothetical protein SPAR22_2334 [Streptococcus pneumoniae GA11304]
gi|353807317|gb|EHD87589.1| hypothetical protein SPAR31_2053 [Streptococcus pneumoniae GA13494]
gi|353810144|gb|EHD90398.1| hypothetical protein SPAR32_2333 [Streptococcus pneumoniae GA13637]
gi|353810377|gb|EHD90629.1| hypothetical protein SPAR34_2123 [Streptococcus pneumoniae GA13856]
gi|353812075|gb|EHD92311.1| hypothetical protein SPAR37_2233 [Streptococcus pneumoniae GA14798]
gi|353815349|gb|EHD95569.1| hypothetical protein SPAR38_2335 [Streptococcus pneumoniae GA16121]
gi|353818397|gb|EHD98596.1| hypothetical protein SPAR39_2229 [Streptococcus pneumoniae GA16242]
gi|353819802|gb|EHD99991.1| hypothetical protein SPAR41_2461 [Streptococcus pneumoniae GA16833]
gi|353820251|gb|EHE00439.1| hypothetical protein SPAR43_2393 [Streptococcus pneumoniae GA17227]
gi|353825486|gb|EHE05651.1| hypothetical protein SPAR49_2403 [Streptococcus pneumoniae GA17328]
gi|353827343|gb|EHE07496.1| hypothetical protein SPAR45_2242 [Streptococcus pneumoniae GA17371]
gi|353827649|gb|EHE07800.1| hypothetical protein SPAR52_2399 [Streptococcus pneumoniae GA17971]
gi|353833599|gb|EHE13709.1| hypothetical protein SPAR58_2223 [Streptococcus pneumoniae GA19451]
gi|353834760|gb|EHE14858.1| hypothetical protein SPAR67_2347 [Streptococcus pneumoniae GA41277]
gi|353836092|gb|EHE16180.1| hypothetical protein SPAR56_0260 [Streptococcus pneumoniae GA19077]
gi|353839019|gb|EHE19095.1| hypothetical protein SPAR71_2362 [Streptococcus pneumoniae GA41437]
gi|353840900|gb|EHE20962.1| hypothetical protein SPAR73_2384 [Streptococcus pneumoniae GA41565]
gi|353841324|gb|EHE21381.1| hypothetical protein SPAR74_2279 [Streptococcus pneumoniae GA41688]
gi|353846604|gb|EHE26633.1| hypothetical protein SPAR91_2264 [Streptococcus pneumoniae GA47283]
gi|353846809|gb|EHE26837.1| hypothetical protein SPAR78_2233 [Streptococcus pneumoniae GA43380]
gi|353848046|gb|EHE28065.1| hypothetical protein SPAR92_2273 [Streptococcus pneumoniae GA47360]
gi|353854519|gb|EHE34497.1| hypothetical protein SPAR96_2285 [Streptococcus pneumoniae GA47388]
gi|353854931|gb|EHE34902.1| hypothetical protein SPAR119_2141 [Streptococcus pneumoniae
GA47439]
gi|353856940|gb|EHE36906.1| hypothetical protein SPAR94_0006 [Streptococcus pneumoniae GA47373]
gi|353858070|gb|EHE38031.1| hypothetical protein SPAR103_2174 [Streptococcus pneumoniae
GA47688]
gi|353859513|gb|EHE39464.1| hypothetical protein SPAR106_2246 [Streptococcus pneumoniae
GA47778]
gi|353862651|gb|EHE42582.1| hypothetical protein SPAR109_2228 [Streptococcus pneumoniae
GA47976]
gi|353864568|gb|EHE44481.1| hypothetical protein SPAR115_2283 [Streptococcus pneumoniae
GA52306]
gi|353867734|gb|EHE47625.1| hypothetical protein SPAR118_2310 [Streptococcus pneumoniae
GA54644]
gi|353868374|gb|EHE48263.1| hypothetical protein SPAR147_2221 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353872069|gb|EHE51938.1| hypothetical protein SPAR145_2344 [Streptococcus pneumoniae NP127]
gi|353872691|gb|EHE52555.1| hypothetical protein SPAR104_2288 [Streptococcus pneumoniae
GA47751]
gi|353876985|gb|EHE56830.1| hypothetical protein SPAR127_2230 [Streptococcus pneumoniae
5185-06]
gi|353879048|gb|EHE58876.1| hypothetical protein SPAR135_2180 [Streptococcus pneumoniae
3063-00]
gi|353879249|gb|EHE59076.1| hypothetical protein SPAR141_2192 [Streptococcus pneumoniae NP112]
gi|353884385|gb|EHE64185.1| hypothetical protein SPAR136_2385 [Streptococcus pneumoniae
EU-NP01]
gi|353884796|gb|EHE64591.1| hypothetical protein SPAR13_2198 [Streptococcus pneumoniae GA07228]
gi|353885148|gb|EHE64938.1| hypothetical protein SPAR17_2285 [Streptococcus pneumoniae GA08780]
gi|353890601|gb|EHE70363.1| hypothetical protein SPAR59_2142 [Streptococcus pneumoniae GA19690]
gi|353890823|gb|EHE70583.1| hypothetical protein SPAR146_2305 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353899712|gb|EHE75281.1| hypothetical protein SPAR24_2323 [Streptococcus pneumoniae GA11663]
gi|353899871|gb|EHE75438.1| hypothetical protein SPAR23_2364 [Streptococcus pneumoniae GA11426]
gi|353904428|gb|EHE79905.1| hypothetical protein SPAR28_2275 [Streptococcus pneumoniae GA13338]
gi|379139018|gb|AFC95809.1| rRNA large subunit methyltransferase [Streptococcus pneumoniae
ST556]
gi|379528778|gb|EHY94032.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02254]
gi|379528954|gb|EHY94207.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02270]
gi|379529122|gb|EHY94374.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02714]
gi|379535497|gb|EHZ00699.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13499]
gi|379535613|gb|EHZ00811.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA04175]
gi|379536181|gb|EHZ01372.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA05245]
gi|379542333|gb|EHZ07491.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA05248]
gi|379542752|gb|EHZ07907.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA06083]
gi|379542851|gb|EHZ08004.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA07914]
gi|379549197|gb|EHZ14308.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13224]
gi|379549395|gb|EHZ14505.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13430]
gi|379554917|gb|EHZ19989.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA13723]
gi|379555606|gb|EHZ20673.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA14373]
gi|379557348|gb|EHZ22394.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA14688]
gi|379561887|gb|EHZ26902.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA17457]
gi|379563170|gb|EHZ28175.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA18068]
gi|379569220|gb|EHZ34194.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA19101]
gi|379569585|gb|EHZ34555.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA19923]
gi|379570102|gb|EHZ35067.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40028]
gi|379575108|gb|EHZ40045.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40183]
gi|379576097|gb|EHZ41026.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40410]
gi|379577192|gb|EHZ42115.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA40563]
gi|379580231|gb|EHZ45126.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA43257]
gi|379584394|gb|EHZ49262.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA43264]
gi|379584907|gb|EHZ49770.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA44386]
gi|379589248|gb|EHZ54088.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA44128]
gi|379591251|gb|EHZ56080.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47179]
gi|379591619|gb|EHZ56443.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47210]
gi|379591932|gb|EHZ56752.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47461]
gi|379597679|gb|EHZ62477.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47522]
gi|379597865|gb|EHZ62662.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47597]
gi|379598118|gb|EHZ62913.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47628]
gi|379604147|gb|EHZ68909.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47760]
gi|379604340|gb|EHZ69101.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47794]
gi|379604550|gb|EHZ69309.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA49194]
gi|379609614|gb|EHZ74352.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA49542]
gi|379611345|gb|EHZ76072.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 8190-05]
gi|379611668|gb|EHZ76391.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 7879-04]
gi|379616180|gb|EHZ80880.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 5652-06]
gi|379616600|gb|EHZ81295.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae 7533-05]
gi|379621389|gb|EHZ86037.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP02]
gi|379622453|gb|EHZ87088.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP03]
gi|379626459|gb|EHZ91077.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP04]
gi|379626667|gb|EHZ91284.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae EU-NP05]
gi|379630505|gb|EHZ95091.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae NP141]
gi|379632913|gb|EHZ97483.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA05578]
gi|379634050|gb|EHZ98616.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae England14-9]
gi|379637489|gb|EIA02045.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA02506]
gi|379638117|gb|EIA02663.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA08825]
gi|381309078|gb|EIC49921.1| hypothetical protein CGSSpSV36_2039 [Streptococcus pneumoniae SV36]
gi|381312649|gb|EIC53445.1| hypothetical protein CGSSp4595_2267 [Streptococcus pneumoniae
459-5]
gi|381316383|gb|EIC57133.1| hypothetical protein CGSSpSV35_2133 [Streptococcus pneumoniae SV35]
gi|395571566|gb|EJG32185.1| hypothetical protein AMCSP03_002155 [Streptococcus pneumoniae
2070035]
gi|395572112|gb|EJG32713.1| hypothetical protein AMCSP11_002165 [Streptococcus pneumoniae
2070005]
gi|395577971|gb|EJG38500.1| hypothetical protein AMCSP12_002157 [Streptococcus pneumoniae
2070108]
gi|395578690|gb|EJG39204.1| hypothetical protein AMCSP04_002051 [Streptococcus pneumoniae
2070109]
gi|395581638|gb|EJG42109.1| hypothetical protein AMCSP13_002728 [Streptococcus pneumoniae
2070335]
gi|395584409|gb|EJG44802.1| hypothetical protein AMCSP05_002194 [Streptococcus pneumoniae
2070425]
gi|395586136|gb|EJG46514.1| hypothetical protein AMCSP14_002148 [Streptococcus pneumoniae
2070531]
gi|395587911|gb|EJG48250.1| hypothetical protein AMCSP06_002277 [Streptococcus pneumoniae
2070768]
gi|395592403|gb|EJG52674.1| hypothetical protein AMCSP08_002368 [Streptococcus pneumoniae
2072047]
gi|395593167|gb|EJG53419.1| hypothetical protein AMCSP16_002138 [Streptococcus pneumoniae
2080076]
gi|395599244|gb|EJG59424.1| hypothetical protein AMCSP02_002114 [Streptococcus pneumoniae
2061617]
gi|395599697|gb|EJG59862.1| hypothetical protein AMCSP15_002177 [Streptococcus pneumoniae
2071247]
gi|395599909|gb|EJG60070.1| hypothetical protein AMCSP07_002177 [Streptococcus pneumoniae
2071004]
gi|395605691|gb|EJG65810.1| hypothetical protein AMCSP09_002260 [Streptococcus pneumoniae
2081074]
gi|395605984|gb|EJG66095.1| hypothetical protein AMCSP17_002155 [Streptococcus pneumoniae
2080913]
gi|395606178|gb|EJG66287.1| hypothetical protein AMCSP10_002086 [Streptococcus pneumoniae
2081685]
gi|395616057|gb|EJG76070.1| hypothetical protein AMCSP18_000377 [Streptococcus pneumoniae
2082170]
gi|395865613|gb|EJG76752.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR27]
gi|395865819|gb|EJG76957.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR48]
gi|395866342|gb|EJG77473.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR95]
gi|395871845|gb|EJG82947.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA52612]
gi|395877231|gb|EJG88301.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA17301]
gi|395877289|gb|EJG88358.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae SPAR55]
gi|395878677|gb|EJG89740.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA04672]
gi|395879393|gb|EJG90453.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA04216]
gi|395884729|gb|EJG95765.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA60190]
gi|395885705|gb|EJG96727.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA54354]
gi|395891649|gb|EJH02644.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA56113]
gi|395892497|gb|EJH03487.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA58581]
gi|395898347|gb|EJH09292.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA17484]
gi|395902206|gb|EJH13141.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA19998]
gi|395903881|gb|EJH14804.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA62331]
gi|395905243|gb|EJH16149.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA60132]
gi|395908258|gb|EJH19141.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA62681]
gi|395911674|gb|EJH22539.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae GA47562]
gi|404278736|emb|CCM09371.1| conserved hypothetical protein [Streptococcus pneumoniae SPNA45]
gi|406370519|gb|AFS44209.1| alpha/beta knot family protein [Streptococcus pneumoniae
gamPNI0373]
gi|429316997|emb|CCP36729.1| conserved hypothetical protein [Streptococcus pneumoniae SPN034156]
gi|429320348|emb|CCP33693.1| conserved hypothetical protein [Streptococcus pneumoniae SPN034183]
gi|429322168|emb|CCP35667.1| conserved hypothetical protein [Streptococcus pneumoniae SPN994039]
gi|429323988|emb|CCP31708.1| conserved hypothetical protein [Streptococcus pneumoniae SPN994038]
gi|444248199|gb|ELU54713.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS8106]
gi|444249124|gb|ELU55619.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS8203]
gi|444254360|gb|ELU60793.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS125219]
gi|444255220|gb|ELU61576.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS70012]
gi|444255507|gb|ELU61859.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0002]
gi|444259252|gb|ELU65568.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0006]
gi|444261640|gb|ELU67939.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PCS81218]
gi|444267194|gb|ELU73107.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0008]
gi|444268511|gb|ELU74362.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0007]
gi|444271736|gb|ELU77487.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0010]
gi|444274503|gb|ELU80150.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0153]
gi|444275903|gb|ELU81504.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0009]
gi|444279581|gb|ELU84974.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0076]
gi|444280510|gb|ELU85876.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0199]
gi|444284966|gb|ELU90064.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0360]
gi|444285588|gb|ELU90638.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0427]
gi|444287821|gb|ELU92731.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pneumoniae PNI0446]
Length = 159
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+V+TVGK + ++ + EY ++ + K E ++L P + + Q ++ E
Sbjct: 1 MKIKVVTVGKLKEKYLKDGIAEYSKRISRFAKFEMIELSDEKTPDKASESENQKILEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D+V++L G SE+ ++ + + G S ++F IGG G ++ R
Sbjct: 61 QRILSKIADRDFVIVLAIEGKTFFSEEFSKQLEETSIKGFSTLTFIIGGSLGLSSSVKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGFPYH 158
>gi|298376010|ref|ZP_06985966.1| alpha/beta knot family protein [Bacteroides sp. 3_1_19]
gi|298267047|gb|EFI08704.1| alpha/beta knot family protein [Bacteroides sp. 3_1_19]
Length = 157
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV-KAQIKD-EDMA 133
+ I +I +GK + + EY +L +Y E +++ + KN ++ +AQ K+ E
Sbjct: 1 MKIGLIVIGKTDAGYFVEAISEYKNRLTHYIPFE-MEVIPDIKNVKNLSEAQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D++V+LDE G + S Q + + T R+ F +GGPYG + + A+
Sbjct: 60 ILKALQPGDYLVLLDEKGKEFTSMQFSTYLEKKMHTVPKRLVFVVGGPYGFSEAVYKAAS 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ +EQ+YR+ TIL + YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFIEQIYRAMTILNNEPYHH 156
>gi|293376407|ref|ZP_06622641.1| rRNA large subunit m3Psi methyltransferase RlmH [Turicibacter
sanguinis PC909]
gi|325839306|ref|ZP_08166772.1| rRNA large subunit m3Psi methyltransferase RlmH [Turicibacter sp.
HGF1]
gi|292644963|gb|EFF63039.1| rRNA large subunit m3Psi methyltransferase RlmH [Turicibacter
sanguinis PC909]
gi|325490588|gb|EGC92903.1| rRNA large subunit m3Psi methyltransferase RlmH [Turicibacter sp.
HGF1]
Length = 159
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-ED 131
+ I +I+VGK + ++L +DE+ +L YCK+ +++ P N + + + IKD E
Sbjct: 1 MNITIISVGKIKEKYIKLGIDEFSKRLSRYCKLTMIEVPDEKTPDNASEREMELIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ +D G SEQ A+ + + +G S ++F IGG G +++R
Sbjct: 61 KQILSKIKDNMYVIAMDLQGEMKTSEQFAKQLSNLALSGDSNVAFIIGGSLGLSDDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ L+L+EQ+YR++ I + YH
Sbjct: 121 ANYKLCFSKMTFPHQLFKLILLEQIYRTYRINNNEPYH 158
>gi|149372591|ref|ZP_01891703.1| hypothetical protein SCB49_12004 [unidentified eubacterium SCB49]
gi|149354634|gb|EDM43198.1| hypothetical protein SCB49_12004 [unidentified eubacterium SCB49]
Length = 157
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I ++ +GK + + + YI +LK+Y E + KN + + Q + E
Sbjct: 1 MKITLLAIGKTDDKKLIELTEVYIKRLKHYVGFSFEIIPDIKKAKNLSEAQ-QKQLEGEE 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +++LDE G S + ++ + ++G + F IGGPYG ++ RAN
Sbjct: 60 ILKRTQTSDALILLDEKGKTYTSVKFSQYLQKHMNSGLKNLIFVIGGPYGFSEEIYTRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LSSM +HQ+ L +VEQ+YR +TILK + YHH
Sbjct: 120 GKVSLSSMTFSHQMVRLFVVEQIYRGFTILKNEPYHH 156
>gi|281425792|ref|ZP_06256705.1| alpha/beta knot family protein [Prevotella oris F0302]
gi|281400053|gb|EFB30884.1| alpha/beta knot family protein [Prevotella oris F0302]
Length = 156
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
++ VGK + + +Y ++++Y D+ + KNT + + Q + E ++
Sbjct: 5 LVLVGKTANKHFVAGIKDYHERIEHYMPF-DIAIIPELKNTKHLSNEQQKEREGELILEQ 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S + A + T A R+ F IGG YG P + RAN I
Sbjct: 64 IKPMDTVVLLDEHGAEYRSIEFANWLQKKQLT-ARRLVFVIGGSYGFSPSVYSRANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ EQLYR+ TI+KG+ YHH
Sbjct: 123 LSRMTFSHQMVRLIFTEQLYRACTIIKGEPYHH 155
>gi|381337331|ref|YP_005175106.1| rRNA large subunit methyltransferase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|356645297|gb|AET31140.1| rRNA large subunit methyltransferase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 159
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + + + EY +L +CKV+ ++L P+N + + + E
Sbjct: 1 MNIKLITVGKLKEKYLTEGIAEYTKRLSRFCKVQVVELIDEKTPQNASEAQNNQIMAREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I S D+V++L G SE+ ++ + G S I+F IGG G +++R
Sbjct: 61 ERIQAKIGSRDYVIVLAIEGKQFPSEEFSQKLEAIAVNGYSDITFIIGGSLGLSKAIKQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|317057213|ref|YP_004105680.1| hypothetical protein Rumal_2571 [Ruminococcus albus 7]
gi|315449482|gb|ADU23046.1| protein of unknown function DUF163 [Ruminococcus albus 7]
Length = 161
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGD--VKAQIKDEDMA 133
+ +ITVGK + + EYI +L +CK E ++L P + D ++ +++E +
Sbjct: 4 VNLITVGKLKEKYWRDAAAEYIKRLGAFCKAEIVELNEYRLPDSPSDKEIQTALENEAAS 63
Query: 134 VMNIISSDD-WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ +S + + + + G + SE+++ M D G+ G S ++F IG +G P +++RA
Sbjct: 64 MEKYLSVNGAYNIAMCIEGKQLTSEELSAAMTDCGTRGYSTLNFIIGSSFGIAPSVKQRA 123
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + +S M HQ+A ++L+EQ+YR + I KG YH
Sbjct: 124 DMKLSMSKMTFPHQLARILLLEQIYRGFQIEKGSKYH 160
>gi|115379968|ref|ZP_01467022.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|310819127|ref|YP_003951485.1| hypothetical protein STAUR_1854 [Stigmatella aurantiaca DW4/3-1]
gi|115363021|gb|EAU62202.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|309392199|gb|ADO69658.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 119
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 119 NTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCI 178
GD KA E A++ DW+V +DE G + S +++ + A TGA + F I
Sbjct: 12 KPGDAKAA---EAEAILARRKPQDWLVAMDERGKSLDSVELSRYLAKA-QTGAKDLLFVI 67
Query: 179 GGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
GG G +RE A++++ LS M L H++A LVL+EQLYR++T+LKG+ YH
Sbjct: 68 GGDEGLAEPVREAAHLTLSLSRMTLPHRLARLVLIEQLYRAFTLLKGEPYH 118
>gi|266624335|ref|ZP_06117270.1| alpha/beta knot family protein [Clostridium hathewayi DSM 13479]
gi|288863810|gb|EFC96108.1| alpha/beta knot family protein [Clostridium hathewayi DSM 13479]
Length = 159
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I +ITVGK + ++EY +L YCK+E +Q+ P + G+ ++ QI++ E
Sbjct: 1 MKITLITVGKIKEKFYTAAIEEYSKRLSRYCKLEIIQVADEKTPDHAGEALETQIREKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I +V+ L G + S +++E + G +G S+I F IGG G ++ +R
Sbjct: 61 ERILAGIREGAYVIALAIEGKMLDSVELSEKIAALGVSGTSQIIFIIGGSLGLSKQVLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + I+ GQ YH
Sbjct: 121 ADYLLSFSRMTFPHQLMRVILLEQIYRGYRIMNGQAYH 158
>gi|336434920|ref|ZP_08614639.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336002328|gb|EGN32439.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD------ 129
+ I +ITVGK + ++ + EY +L YCK+E +++ + T D +++ +
Sbjct: 1 MKISLITVGKIKEKYLKDAIAEYSKRLSKYCKLEIIEV--ADEKTPDQASEVVENGIRAK 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +M I D +VV L+ G + SE++A + G G S I+F IGG G G +
Sbjct: 59 EAERIMKYIKEDSYVVTLEIQGKMLSSEELASKIDQLGIQGKSHITFVIGGSIGLGEAVL 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R++ ++ S M HQ+ ++L+EQ+YRS+ I + YH
Sbjct: 119 KRSDFALSFSKMTFPHQLMRVILLEQIYRSYRINFSEPYH 158
>gi|335040350|ref|ZP_08533480.1| Ribosomal RNA large subunit methyltransferase H [Caldalkalibacillus
thermarum TA2.A1]
gi|334179737|gb|EGL82372.1| Ribosomal RNA large subunit methyltransferase H [Caldalkalibacillus
thermarum TA2.A1]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIK-DED 131
+ I V++VGK + ++ + E+ ++K YCK++ +++ P++ + + Q+K E
Sbjct: 1 MQITVLSVGKIKEKYLRQGIAEFEKRIKPYCKLKLIEVNDEQAPEHLSEEQLRQVKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ L G+ SEQ+A + + G S+I F IGG G ++ +R
Sbjct: 61 KRLLAHIKPEHYVIALAIEGVQWSSEQLARELEQLATYGRSQIVFVIGGSNGLADEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + S M HQ+ L+L+EQLYRS+ I+KG+ YH
Sbjct: 121 ANVQLSFSKMTFPHQLMKLILMEQLYRSFKIMKGEPYH 158
>gi|373855229|ref|ZP_09597975.1| protein of unknown function DUF163 [Bacillus sp. 1NLA3E]
gi|372454298|gb|EHP27763.1| protein of unknown function DUF163 [Bacillus sp. 1NLA3E]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKA-QIKD-EDMA 133
I +ITVGK + ++ +DE++ ++ Y K+E +++ P+ + Q+K E
Sbjct: 3 ILIITVGKLKEKYLKQGIDEFVKRMSSYAKLEMIEVADEKAPEELSLAEMDQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N I D +V+ L +G SE++AE + + G S+I+F IGG G ++ RAN
Sbjct: 63 ILNKIPQDTYVIALAIDGKMKSSEELAEDLDKLATYGKSKIAFVIGGSLGLSDEVLRRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSRMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|304385832|ref|ZP_07368176.1| alpha/beta knot family protein [Pediococcus acidilactici DSM 20284]
gi|304328336|gb|EFL95558.1| alpha/beta knot family protein [Pediococcus acidilactici DSM 20284]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I++I VGK + ++ V EY +L +CK + +++ P++ D + ++ + E
Sbjct: 3 IKIIGVGKLKEKYLKQGVAEYAKRLSKFCKFQIIEVPDEKAPESLSDAQMEMVKEKEGKR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L+ G + SE++AE + + G S I+F IGG G P + +RA+
Sbjct: 63 ILAKIKDREYVFTLESKGKERSSEELAEEIAKLTTYGHSDITFVIGGSLGLSPAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+I L HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 TAISFGRFTLPHQLMRLVLTEQIYRAFMIQSGSPYH 158
>gi|270291831|ref|ZP_06198046.1| conserved hypothetical protein [Streptococcus sp. M143]
gi|270279359|gb|EFA25201.1| conserved hypothetical protein [Streptococcus sp. M143]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD------ 129
+ I+++TVGK + ++ + EY ++ + VE ++L + T D ++ ++
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFATVEIIEL--ADEKTPDKASESENYKILEI 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +++ + D+VV+L G + SE+ + + A G S ++F IGG G P ++
Sbjct: 59 EGNRILSKVGERDFVVVLAIEGKTLSSEEFSRQLEQASIKGFSTLTFIIGGSLGLSPAVK 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 119 YRANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|126701276|ref|YP_001090173.1| rRNA large subunit methyltransferase [Clostridium difficile 630]
gi|255102866|ref|ZP_05331843.1| hypothetical protein CdifQCD-6_18786 [Clostridium difficile
QCD-63q42]
gi|423089513|ref|ZP_17077870.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
difficile 70-100-2010]
gi|118574659|sp|Q181Q1.1|RLMH_CLOD6 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|115252713|emb|CAJ70557.1| Ribosomal RNA large subunit methyltransferase H,SPOUT
methyltransferase family [Clostridium difficile 630]
gi|357558067|gb|EHJ39576.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
difficile 70-100-2010]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I ++ VGK + ++L +DE+ +L YCK+E ++L P+N + +I KD E
Sbjct: 1 MNISIVVVGKIKEKYLKLGIDEFKKRLSKYCKLEIIELDDEKAPENLSVKEMEIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ L +G + SE++A+ M D G S + F IGG G ++ R
Sbjct: 61 KKILGKIKHNSYVIALAIDGKGLSSEELAKTMSDLAVRGNSSLCFIIGGSLGLSDEVLGR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I G+ YH
Sbjct: 121 ADYRLSFSRMTFPHQMMRLILLEQIYRAYRINNGEPYH 158
>gi|319648467|ref|ZP_08002683.1| hypothetical protein HMPREF1012_03722 [Bacillus sp. BT1B_CT2]
gi|423680335|ref|ZP_17655174.1| rRNA large subunit methyltransferase [Bacillus licheniformis WX-02]
gi|317389546|gb|EFV70357.1| hypothetical protein HMPREF1012_03722 [Bacillus sp. BT1B_CT2]
gi|383441441|gb|EID49150.1| rRNA large subunit methyltransferase [Bacillus licheniformis WX-02]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++ +GK + ++ +DEYI +L Y KV+ ++L P+N D +I KD E
Sbjct: 3 ISIVAIGKLKEKYLKQGIDEYIKRLSAYAKVDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ M + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKSSEELADNMDRLATYGKSKVTFVIGGSLGLSDAVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSRMTFPHQLMRLILLEQVYRAFRINRGEPYH 158
>gi|340353451|ref|ZP_08676268.1| SPOUT methyltransferase superfamily protein [Prevotella pallens
ATCC 700821]
gi|339609974|gb|EGQ14836.1| SPOUT methyltransferase superfamily protein [Prevotella pallens
ATCC 700821]
Length = 156
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+I VG+ + + +Y+G++ +Y K+ + N K + + +I+ E ++
Sbjct: 5 LILVGRTNNELFAHAIADYVGRIGHYIPFKIVTIPELKNTKKLSEAQQKIR-EGETILRE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I + D VV+LDE+G + S A + +T A + F IGG YG + RAN I
Sbjct: 64 IQTADTVVLLDEHGKEFRSVDYAAWLQKKQNT-AKHLVFVIGGAYGFSEAVYSRANEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ +I++G+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFVEQLYRACSIIRGEPYHH 155
>gi|386320617|ref|YP_006016779.1| SPOUT methyltransferase [Riemerella anatipestifer RA-GD]
gi|325335160|gb|ADZ11434.1| SPOUT methyltransferase, predicted [Riemerella anatipestifer RA-GD]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ ++I +GK +Q ++ Y +L Y + ++L + KN ++ ++ K+E
Sbjct: 3 MQFKLICIGKTDQKEMQNLISYYHKRLPKYYNFDIVEL-PDIKNAKNLTPEVIKKEEAKL 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
N I S D +++LDE G S +E + + R+ F IGG YG ++ +RAN
Sbjct: 62 FFNHIESTDTIILLDEKGKQFTSRAFSEQIHHYMNASIKRVCFLIGGAYGFSEEIYQRAN 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M HQ+ L VEQ+YR+ IL+G+ YH
Sbjct: 122 DKLALSKMTFTHQMIRLFFVEQIYRADQILQGKPYH 157
>gi|116619018|ref|YP_819389.1| rRNA large subunit methyltransferase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122270782|sp|Q03UV6.1|RLMH_LEUMM RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|116097865|gb|ABJ63016.1| hypothetical protein LEUM_1945 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 159
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + + + EY +L +CKV+ ++L P+N + + + E
Sbjct: 1 MNIKLITVGKLKEKYLTEGIAEYTKRLSRFCKVQVVELIDEKTPENASEAQNNQIMAREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I S D+V++L G SE+ ++ + G S I+F IGG G +++R
Sbjct: 61 ERIQAKIGSRDYVIVLAIEGKQFPSEEFSQKLEAIAVNGYSDITFIIGGSLGLSKAIKQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|407452902|ref|YP_006724627.1| hypothetical protein B739_2145 [Riemerella anatipestifer RA-CH-1]
gi|403313886|gb|AFR36727.1| hypothetical protein B739_2145 [Riemerella anatipestifer RA-CH-1]
Length = 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ ++I +GK +Q ++ Y +L Y + ++L + KN ++ ++ K+E
Sbjct: 1 MQFKLICIGKTDQKEIQNLISYYHKRLPKYYNFDIVEL-PDIKNAKNLTPEVIKKEEAKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
N I S D +++LDE G S +E + + R+ F IGG YG + +RAN
Sbjct: 60 FFNHIESTDTIILLDEKGKQFTSRAFSEQIHHYMNASIKRVCFLIGGAYGFSEDIYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M HQ+ L VEQ+YR+ IL+G+ YH
Sbjct: 120 DKLALSKMTFTHQMIRLFFVEQIYRADQILQGKPYH 155
>gi|343519995|ref|ZP_08756965.1| rRNA large subunit m3Psi methyltransferase RlmH [Parvimonas sp.
oral taxon 393 str. F0440]
gi|343398536|gb|EGV11068.1| rRNA large subunit m3Psi methyltransferase RlmH [Parvimonas sp.
oral taxon 393 str. F0440]
Length = 160
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 7/160 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQ------LRSNPKNTGDVKAQIKD 129
+ I+++ VGK + DEY ++ + K+E ++ L P +++ +K
Sbjct: 1 MNIKILCVGKLSEKFFKDACDEYKKRISAFSKIEIIEIPEEKILTQTPSKL-EIENVLKK 59
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E+ ++N IS D+V+ L+ G IGSE ++ + D + G S+ F IGG +G G +++
Sbjct: 60 EEGRILNKISDSDFVITLEILGKTIGSEDFSKFLEDKMNDGNSKFIFVIGGSFGLGDEIK 119
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+N + S L HQ+ +VL+EQ+YR++ I+ Q YH
Sbjct: 120 KRSNFKLSFSKFTLPHQLFRVVLLEQIYRAFKIMNNQIYH 159
>gi|319642096|ref|ZP_07996762.1| hypothetical protein HMPREF9011_02362 [Bacteroides sp. 3_1_40A]
gi|345521259|ref|ZP_08800590.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
4_3_47FAA]
gi|254835357|gb|EET15666.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
4_3_47FAA]
gi|317386362|gb|EFV67275.1| hypothetical protein HMPREF9011_02362 [Bacteroides sp. 3_1_40A]
Length = 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ ++ VG+ +++Y+ + +++ D+++ KNT ++ + Q + E
Sbjct: 1 MKFTLLVVGRTVEKHYITAINDYVERTRHFISF-DMEVIPELKNTKNLSMEQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D V+LDE+G + S + A + T R+ F IGGPYG PK+ + A
Sbjct: 60 ILKALLPGDVAVLLDEHGKEFRSVEFANWIERKMHTVNKRLVFIIGGPYGFAPKIYDAAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ VEQLYR+ TIL YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFVEQLYRAMTILNNGPYHH 156
>gi|357636380|ref|ZP_09134255.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
macacae NCTC 11558]
gi|357584834|gb|EHJ52037.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
macacae NCTC 11558]
Length = 159
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDED 131
+ I+VITVGK + ++ + EY +L+ + K E ++L +A+ ++ E
Sbjct: 1 MKIKVITVGKLKEKYLEKGIAEYTKRLRPFTKCEIIELTDEKTPAAASQAENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ D+ + L G S++ ++L+ D G S F IGG G +++ER
Sbjct: 61 KRILNKISNRDFTIALAIEGKQFPSKEFSQLLADTVLKGYSSFVFIIGGSLGLSQEIKER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ADLLMSFGLLTLPHQMMRLVLMEQIYRAFMIQEGSPYH 158
>gi|379706261|ref|YP_005204720.1| hypothetical protein Sinf_1962 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682960|gb|AEZ63249.1| hypothetical protein Sinf_1962 [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 159
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I VGK + ++ + EY ++ + K E ++L P N + + ++ E
Sbjct: 1 MKVKIIAVGKLKEKYLKDGIAEYGKRMIRFAKFEIVELSDEKTPDNASEAQNHQIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D+V++L G SE+ + ++ DA G S I F IGG G K+++R
Sbjct: 61 DRILAKISERDYVIVLAIEGKQFPSEEFSRIIADATLRGYSDIVFVIGGSLGLADKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + S+ L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGSLTLPHQLMRLVLAEQIYRAFMIQQGSPYH 158
>gi|313207384|ref|YP_004046561.1| hypothetical protein Riean_1902 [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484750|ref|YP_005393662.1| hypothetical protein RA0C_0101 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|416110356|ref|ZP_11591971.1| SpoT methyltransferase superfamily protein [Riemerella
anatipestifer RA-YM]
gi|442315347|ref|YP_007356650.1| hypothetical protein G148_1652 [Riemerella anatipestifer RA-CH-2]
gi|312446700|gb|ADQ83055.1| protein of unknown function DUF163 [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|315023279|gb|EFT36289.1| SpoT methyltransferase superfamily protein [Riemerella
anatipestifer RA-YM]
gi|380459435|gb|AFD55119.1| hypothetical protein RA0C_0101 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|441484270|gb|AGC40956.1| hypothetical protein G148_1652 [Riemerella anatipestifer RA-CH-2]
Length = 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ ++I +GK +Q ++ Y +L Y + ++L + KN ++ ++ K+E
Sbjct: 1 MQFKLICIGKTDQKEMQNLISYYHKRLPKYYNFDIVEL-PDIKNAKNLTPEVIKKEEAKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
N I S D +++LDE G S +E + + R+ F IGG YG ++ +RAN
Sbjct: 60 FFNHIESTDTIILLDEKGKQFTSRAFSEQIHHYMNASIKRVCFLIGGAYGFSEEIYQRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M HQ+ L VEQ+YR+ IL+G+ YH
Sbjct: 120 DKLALSKMTFTHQMIRLFFVEQIYRADQILQGKPYH 155
>gi|154494439|ref|ZP_02033759.1| hypothetical protein PARMER_03794 [Parabacteroides merdae ATCC
43184]
gi|423347003|ref|ZP_17324690.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
merdae CL03T12C32]
gi|423725382|ref|ZP_17699519.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
merdae CL09T00C40]
gi|154085883|gb|EDN84928.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Parabacteroides merdae ATCC 43184]
gi|409218664|gb|EKN11632.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
merdae CL03T12C32]
gi|409234506|gb|EKN27334.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
merdae CL09T00C40]
Length = 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I +I +GK + ++EY +L +Y E D++ N KN + + + ++
Sbjct: 1 MKIALIVIGKTDAGYFVEAINEYKNRLVHYIPFEMEVIPDIK---NVKNLSESQQKEREG 57
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
D+ ++ + D++V+LDE G + S Q + + T R+ F +GGPYG + +
Sbjct: 58 DL-ILKALQPGDYLVLLDEKGKEFTSVQFSTYIERKTHTVPKRLVFVVGGPYGFSDAVYK 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A I LS M +HQ+ L+ +EQLYR+ TIL + YHH
Sbjct: 117 AAAEKISLSKMTFSHQMIRLIFIEQLYRAMTILNNEPYHH 156
>gi|408370408|ref|ZP_11168185.1| rRNA large subunit methyltransferase [Galbibacter sp. ck-I2-15]
gi|407744166|gb|EKF55736.1| rRNA large subunit methyltransferase [Galbibacter sp. ck-I2-15]
Length = 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQIKDEDMA 133
+ I++I VGK + ++ +Y +L +Y +E + KN + + + K E
Sbjct: 1 MNIKLIVVGKTDDSNLIELIAQYTKRLSHYVNFSIEIIPDIKQAKNLSESEQKTK-EGAQ 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ +S D V++LDE G S A + ++G ++ + IGGPYG ++ +++
Sbjct: 60 ILSKVSPADCVILLDEKGKQFSSVDFAAQLQKRMNSGVKQLVYVIGGPYGFSEEVYQKSQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR +TIL+ + YHH
Sbjct: 120 GKISLSHMTFSHQMIRLFFIEQLYRGFTILRNEPYHH 156
>gi|337752126|ref|YP_004646288.1| protein RlmH [Paenibacillus mucilaginosus KNP414]
gi|336303315|gb|AEI46418.1| RlmH [Paenibacillus mucilaginosus KNP414]
Length = 159
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN-TGDVKAQIKD-EDMA 133
I++ITVGK + + + EY +L Y K+ +++ P+ + +AQ+K E
Sbjct: 3 IQMITVGKLKEKYLVEGIAEYTKRLGPYAKISIVEVPDEKTPETLSAAEEAQVKQREGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +S +V+ L +G + SE +A + D + G S ++F IGG G P++ RA+
Sbjct: 63 ILAKVSEGAFVIALAIDGKPLSSEDLARQLQDLATYGRSSVAFIIGGSLGLAPEVLARAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + M L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 LKLSFGRMTLPHQLMRLVLVEQVYRAFRIMRGEPYH 158
>gi|281420342|ref|ZP_06251341.1| alpha/beta knot family protein [Prevotella copri DSM 18205]
gi|281405644|gb|EFB36324.1| alpha/beta knot family protein [Prevotella copri DSM 18205]
Length = 156
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 118 KNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
KNT + Q + E ++ ++ D VV++DE+G + S + A+ + +T A R+
Sbjct: 42 KNTKSLSEQQQKEREGELILKLLQPSDTVVLMDEHGQEFRSIEFAKWIERKQAT-ARRLV 100
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F IGGPYG + +RAN I LS M +HQ+ L+ E LYR+ TI+KG+ YHH
Sbjct: 101 FVIGGPYGFSQSVYDRANEKISLSKMTFSHQMVRLIFTEALYRACTIIKGEPYHH 155
>gi|404494244|ref|YP_006718350.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase [Pelobacter
carbinolicus DSM 2380]
gi|118574615|sp|Q3A1E3.1|RLMH_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|77546252|gb|ABA89814.1| 23S rRNA (3-N-methyl-pseudoU1915)-methyltransferase, putative
[Pelobacter carbinolicus DSM 2380]
Length = 156
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 76/134 (56%)
Query: 97 EYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGS 156
++ +L+ Y V ++L+ D + + E ++ I + +V+ LDE G + S
Sbjct: 22 DFEARLQRYLPVRIVELKEEKSGKNDAEYIRRQEGRRILEKIPAGSFVIALDERGRSVSS 81
Query: 157 EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQL 216
E++A L+ ++ IGG YG ++++RA++ + LS M L HQ+A LVL+EQL
Sbjct: 82 EKLAALLERHMMESTPELTLIIGGAYGLCDEVKQRADMLMSLSEMTLTHQMARLVLLEQL 141
Query: 217 YRSWTILKGQNYHH 230
YR +TI++ + YH+
Sbjct: 142 YRGFTIVRNEPYHN 155
>gi|339448884|ref|ZP_08652440.1| rRNA large subunit methyltransferase [Lactobacillus fructivorans
KCTC 3543]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----EDMA 133
I+++ VGK + + ++EY +L +CK + +Q+ +A++ D E
Sbjct: 3 IKLVVVGKLKEKYFKDGINEYAKRLSRFCKFKIVQVPDEKAPETLSQAEMDDVMDKEGTR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V+ L G ++ SEQ A+ + D + G S I+F IGG G PK+ +RAN
Sbjct: 63 ILAKIKDREYVIALAIQGDELTSEQFAKKIQDLTTYGHSDITFVIGGSLGLAPKVLKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ L HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 FELSFGRFTLPHQLMRLVLTEQVYRAFMINSGSPYH 158
>gi|258648358|ref|ZP_05735827.1| alpha/beta knot family protein [Prevotella tannerae ATCC 51259]
gi|260851524|gb|EEX71393.1| alpha/beta knot family protein [Prevotella tannerae ATCC 51259]
Length = 157
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ + I VGK + + ++ EY ++K+Y E +++ + K+ + K Q + E
Sbjct: 1 MKVVFIMVGKTTNKHIAQLMLEYEERIKHYLPFE-IKVVDDLKDCKALSEKEQKQREGER 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ ++ + D +++LDE G + S A + + G R+ F IGGPYG ++ +
Sbjct: 60 IQRLLQAGDKIILLDERGREFRSVDFASFLQQQINAGGRRMVFIIGGPYGFSEEIYNKVT 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + +HQ+ L +EQLYR+ TIL G+ YHH
Sbjct: 120 FKLSLSKLTFSHQMVRLFFLEQLYRAETILHGEPYHH 156
>gi|229548113|ref|ZP_04436838.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
ATCC 29200]
gi|257091277|ref|ZP_05585638.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|312905336|ref|ZP_07764451.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0635]
gi|422688406|ref|ZP_16746561.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0630]
gi|422698006|ref|ZP_16755932.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1346]
gi|422731458|ref|ZP_16787825.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0645]
gi|229306799|gb|EEN72795.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
ATCC 29200]
gi|257000089|gb|EEU86609.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|310631360|gb|EFQ14643.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0635]
gi|315162515|gb|EFU06532.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0645]
gi|315173448|gb|EFU17465.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX1346]
gi|315578615|gb|EFU90806.1| conserved hypothetical protein TIGR00246 [Enterococcus faecalis
TX0630]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I+++TVGK + + ++EY+ +L Y K+E +++ P+ D + Q+K+ E
Sbjct: 1 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +++V +L NG + SE+ ++ + G +G S ++F IGG G + R
Sbjct: 61 QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N I + HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 121 SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYH 158
>gi|255659997|ref|ZP_05405406.1| alpha/beta knot family protein [Mitsuokella multacida DSM 20544]
gi|260847750|gb|EEX67757.1| alpha/beta knot family protein [Mitsuokella multacida DSM 20544]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQ--IKDED 131
+ I ++ GK + + + E++ +LK Y +VE ++ P++ + + + E
Sbjct: 1 MKITIVCAGKIKEKYLSAGIAEFLKRLKPYAQVEIREIHEEKMPEDPSPAEKEQTLAREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ ++ ++ +LD G SEQ+A+ + D G G S I+F IGG +G ++R R
Sbjct: 61 EKLLKLVPDGSYLYVLDVYGKLKSSEQLAKEIADLGLRGRSSITFLIGGAFGLSEEVRAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ I S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 121 ADERISFSPMTFTHQMVRLLLVEQIYRAFKINRGEKYH 158
>gi|34541669|ref|NP_906148.1| rRNA large subunit methyltransferase [Porphyromonas gingivalis W83]
gi|419970045|ref|ZP_14485559.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas gingivalis W50]
gi|61217596|sp|Q7MT92.1|RLMH_PORGI RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|34397987|gb|AAQ67047.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
gi|392611732|gb|EIW94461.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Porphyromonas gingivalis W50]
Length = 157
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKD- 129
+ I ++ VGK S + +EYI +L +Y E D++L S + Q KD
Sbjct: 1 MKIVLLVVGKTDSKLMVQATEEYIRRLSHYVSFEVEVIPDVRLGSKLSS-----EQQKDA 55
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E ++ + D V+LDE G + S + + + G R+ F IGGPYG P ++
Sbjct: 56 EGREILARLRPSDSTVLLDERGREYSSMEFSAFLQKKMLIGTRRMVFVIGGPYGFSPAVQ 115
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
E I LS M +HQ+ L EQ+YR+ TIL + YHH
Sbjct: 116 EAVTDRISLSRMTFSHQMIRLFFTEQVYRAMTILNHEPYHH 156
>gi|154496020|ref|ZP_02034716.1| hypothetical protein BACCAP_00303 [Bacteroides capillosus ATCC
29799]
gi|150274903|gb|EDN01959.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 160
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
L I VI VGK + EY +L YCK + + +L NP + + A ++ E
Sbjct: 2 LGIHVICVGKLKEKFYTDASAEYAKRLGGYCKFQLTELPEERLPDNP-SQAQIDAALRKE 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
A++ + V + G + SE+++ + D G S++ F IG YG P ++E
Sbjct: 61 ADAILQRLPKGAAVTAMCVEGKSLSSEELSRRVTDWAGQGRSQLCFVIGSSYGLHPAVKE 120
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA++ + +S M H +A ++L+EQLYR++ I +G +YH
Sbjct: 121 RADLRLSMSKMTFPHHLARVMLLEQLYRAFKIAEGSSYH 159
>gi|86156662|ref|YP_463447.1| hypothetical protein Adeh_0233 [Anaeromyxobacter dehalogenans
2CP-C]
gi|118574547|sp|Q2IMI1.1|RLMH_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|85773173|gb|ABC80010.1| protein of unknown function DUF163 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 153
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ IRV+ VG+ RS VDEY +L Y + E +++ K G A+ +E A++
Sbjct: 1 MKIRVVAVGRDRSGLYAPAVDEYAKRLGRYLRFELVEVPEARKLAGTPGAK-GEEGAALL 59
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ + VV+LDE G ++ S AE + G ++ IGG G P++ RA
Sbjct: 60 AKLGPRERVVVLDERGDELTSVAFAERVRRWMERGQD-VALLIGGSDGLAPEVLARAEER 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +S L H++A LVLVEQLYR+ TIL+G+ YH
Sbjct: 119 LAVSRFTLAHRLARLVLVEQLYRAMTILRGEPYH 152
>gi|421878547|ref|ZP_16310026.1| Ribosomal RNA large subunit methyltransferase H [Leuconostoc
citreum LBAE C11]
gi|390447453|emb|CCF26146.1| Ribosomal RNA large subunit methyltransferase H [Leuconostoc
citreum LBAE C11]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I++ITVGK + ++ + EY ++ + KVE +++ P++ + Q + E
Sbjct: 3 IKLITVGKLKEHYLKDGIAEYSKRIARFAKVELIEVPDEKTPEHASQAQNQKIMAKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + I S D+V++L G + SE ++ M D +G S I+F IGG G ++++RA+
Sbjct: 63 IADKIGSRDYVIVLAIEGKQLPSETFSKKMSDITLSGYSTITFIIGGSLGLDERIKQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++I + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 123 MAISFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|170016548|ref|YP_001727467.1| rRNA large subunit methyltransferase [Leuconostoc citreum KM20]
gi|414597256|ref|ZP_11446825.1| Ribosomal RNA large subunit methyltransferase H [Leuconostoc
citreum LBAE E16]
gi|421876188|ref|ZP_16307747.1| Ribosomal RNA large subunit methyltransferase H [Leuconostoc
citreum LBAE C10]
gi|238688944|sp|B1MWX1.1|RLMH_LEUCK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|169803405|gb|ACA82023.1| Uncharacterized conserved protein [Leuconostoc citreum KM20]
gi|372557939|emb|CCF23867.1| Ribosomal RNA large subunit methyltransferase H [Leuconostoc
citreum LBAE C10]
gi|390481911|emb|CCF28886.1| Ribosomal RNA large subunit methyltransferase H [Leuconostoc
citreum LBAE E16]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I++ITVGK + ++ + EY ++ + KVE +++ P++ + Q + E
Sbjct: 3 IKLITVGKLKEHYLKDGIAEYSKRIARFAKVELIEVPDEKTPEHASQAQNQQIMAKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + I S D+V++L G + SE ++ M D +G S I+F IGG G ++++RA+
Sbjct: 63 IADKIGSRDYVIVLAIEGKQLPSETFSKKMSDITLSGYSTITFIIGGSLGLDERIKQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++I + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 123 MAISFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|456013123|gb|EMF46792.1| methyltransferase RlmH [Planococcus halocryophilus Or1]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I +I+VGK + ++ ++EY +L Y K+ ++++ P+ D +I K E
Sbjct: 1 MNISIISVGKLKEKYLKSGIEEYTKRLGSYSKINEIEVADEKAPEQLSDADMEIVKKKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS+D +V+ L +G SEQ+A+ + + G S+I F IGG G ++ +R
Sbjct: 61 DRILAKISADAYVIALAIDGKMKTSEQLAKDIESLMTYGRSKIVFVIGGSLGLHDEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+LVEQ+YR++ I+KG+ YH
Sbjct: 121 ADEKLSFSKMTFPHQLMKLILVEQVYRAFRIMKGEPYH 158
>gi|410726119|ref|ZP_11364363.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium sp.
Maddingley MBC34-26]
gi|410601365|gb|EKQ55880.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium sp.
Maddingley MBC34-26]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDED-- 131
+ I +ITVGK + ++ ++EY +L YCK+E ++L P N + + + E
Sbjct: 1 MNITIITVGKIKEKYLKDAIEEYSKRLGRYCKLEIIELADEKTPDNASEKEEEGIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ +D G + SE A + G TG S I+F IGG G + R
Sbjct: 61 QGILNKIKDNMFVIAMDLGGKQLTSEAFANYIESLGVTGNSNIAFVIGGSLGISKSVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQIYRGFRIMKGEPYH 158
>gi|224024109|ref|ZP_03642475.1| hypothetical protein BACCOPRO_00828 [Bacteroides coprophilus DSM
18228]
gi|224017331|gb|EEF75343.1| hypothetical protein BACCOPRO_00828 [Bacteroides coprophilus DSM
18228]
Length = 157
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
++ VG+ +++Y+ ++K+Y D+++ KNT + + Q + E ++
Sbjct: 5 LLVVGRTVEKHYITAINDYVERIKHYTPF-DMEVIPELKNTKSLSMEQQKEKEGELILKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE+G + S + AE T R+ F IGGPYG + A I
Sbjct: 64 LQPGDVVVLLDEHGKEFRSIEFAEWAEKKMHTVNKRLVFIIGGPYGFSKDIYAAAQEKIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ IL G YHH
Sbjct: 124 LSKMTFSHQMIRLIFVEQLYRAMNILAGGPYHH 156
>gi|384516836|ref|YP_005704141.1| hypothetical protein EF62_0111 [Enterococcus faecalis 62]
gi|323478969|gb|ADX78408.1| conserved hypothetical protein [Enterococcus faecalis 62]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I+++TVGK + + ++EY+ +L Y K+E +++ P+ D + Q+K+ E
Sbjct: 1 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +++V +L NG + SE+ ++ + G +G S ++F IGG G + +R
Sbjct: 61 QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N I + HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 121 NNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYH 158
>gi|433463669|ref|ZP_20421213.1| hypothetical protein D479_18729 [Halobacillus sp. BAB-2008]
gi|432187219|gb|ELK44539.1| hypothetical protein D479_18729 [Halobacillus sp. BAB-2008]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ + ++TVGK + ++ + EY +L Y KV+ +++ P+N + + ++K E
Sbjct: 1 MKLTIVTVGKLKEKYLKQGIAEYTKRLGPYAKVDVIEVPDEKAPENLSEAQMLEVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D +V+ L+ G + SE++A+ M + + G S+++F IGG G ++ ER
Sbjct: 61 ERILAKISPDTYVITLEIEGKQLTSEKLAKKMDELATYGKSKVAFVIGGSLGLSDEVLER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + S+M HQ+ L+LVEQ+YR++ I + + YH
Sbjct: 121 SDFGLSFSNMTFPHQLMRLMLVEQVYRAFKINRNEPYH 158
>gi|322392428|ref|ZP_08065888.1| alpha/beta knot family protein [Streptococcus peroris ATCC 700780]
gi|321144420|gb|EFX39821.1| alpha/beta knot family protein [Streptococcus peroris ATCC 700780]
Length = 159
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I+++TVGK + ++ + EY ++ + +E ++L P D + A+I D E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFATIEIIELADEKTPDRASDSENAKILDVEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++VV+L G + SE+ ++ + A G S ++F IGG G ++++R
Sbjct: 61 NRILSKIGDREFVVVLAIEGKTLSSEEFSKQLEQASINGFSTLTFVIGGSLGLSNEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVL EQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLTEQIYRAFTIQQGSPYH 158
>gi|373485845|ref|ZP_09576527.1| protein of unknown function DUF163 [Holophaga foetida DSM 6591]
gi|372012895|gb|EHP13448.1| protein of unknown function DUF163 [Holophaga foetida DSM 6591]
Length = 152
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
PIR IT+G+ + + + Y G LK Y +++ +++ P+ G + Q+K+E +
Sbjct: 3 PIRFITIGRPKLGACRELETHYGGLLKTYARMDLVEI---PEAKGSPERQLKEEAARIRQ 59
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ V+LD G GSE A+ +G+ G S ++F +G +G +++ +
Sbjct: 60 HLGGIRCPVLLDAGGPARGSEAFAKWLGERMDRGES-LAFAVGSSHGFDSELKSEVREKL 118
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS M H ++ ++ +EQLYR++TILKG+ YH
Sbjct: 119 SLSPMTFPHDLSRIMFLEQLYRAFTILKGKTYH 151
>gi|403385746|ref|ZP_10927803.1| hypothetical protein KJC30_13660 [Kurthia sp. JC30]
Length = 159
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ + +I+VGK + +++ ++EY+ +L Y K++ +++ P+ D + I K E
Sbjct: 1 MSVTIISVGKLKEKYLKMGIEEYVKRLNGYTKIDLVEVPDEKAPEQLSDAEMDIVKKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D V+ L NG SEQMA+ + + + G S+I F IGG G + R
Sbjct: 61 ERILAKIPHDAHVIALAINGKMRSSEQMAKDIENCMTYGQSKIVFVIGGSLGLHDDVLSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + M L HQ+ LVLVEQ+YRS+ I+K + YH
Sbjct: 121 ANDLLSFGKMTLPHQLMKLVLVEQIYRSFRIMKNEPYH 158
>gi|288906444|ref|YP_003431666.1| hypothetical protein GALLO_2260 [Streptococcus gallolyticus UCN34]
gi|306832481|ref|ZP_07465633.1| alpha/beta knot family protein [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325979507|ref|YP_004289223.1| alpha/beta knot family protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386338933|ref|YP_006035102.1| SPOUT methyltransferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288733170|emb|CBI14751.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304425381|gb|EFM28501.1| alpha/beta knot family protein [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325179435|emb|CBZ49479.1| alpha/beta knot family protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281569|dbj|BAK29143.1| predicted SPOUT methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 159
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I VGK + ++ + EY ++ + K E ++L P N + Q ++ E
Sbjct: 1 MKVKIIAVGKLKEKYLKDGIAEYGKRMSRFAKFEIVELADEKTPDNASAAQNQQIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D+V++L G + SE ++++ DA G S I F IGG G K+++R
Sbjct: 61 ERILAKISERDYVIVLAIEGKQLSSEAFSQVIADATLRGYSDIVFVIGGSLGLADKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANLRLSFGLLTLPHQLMRLVLSEQIYRAFMIQQGSPYH 158
>gi|339498480|ref|ZP_08659456.1| rRNA large subunit methyltransferase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 159
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQI-KDEDMA 133
I++ITVGK + ++ + EY +L + KV +++ P+ + + QI E
Sbjct: 3 IKIITVGKLKEQYLKDGIAEYTKRLSRFAKVHLIEVPDEKTPEKASEAENTQIMAKEGQR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I D+V++L G + SE AE M G S ++F IGG G P+++ RAN
Sbjct: 63 IQEKIGERDYVIVLAIEGKQLPSEVFAEKMNQITVDGYSDVTFIIGGSLGLSPEVKHRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 123 FKISFGLLTLPHQLMRLVLVEQVYRAFMIQQGSPYH 158
>gi|265762862|ref|ZP_06091430.1| UPF0247 protein [Bacteroides sp. 2_1_16]
gi|423258245|ref|ZP_17239168.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL07T00C01]
gi|423264787|ref|ZP_17243790.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL07T12C05]
gi|263255470|gb|EEZ26816.1| UPF0247 protein [Bacteroides sp. 2_1_16]
gi|387777691|gb|EIK39788.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL07T00C01]
gi|392704520|gb|EIY97655.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL07T12C05]
Length = 157
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
+I VG+ +++YI + K++ D+++ KNT + + Q + E +
Sbjct: 5 LIVVGRTVEQHYITAINDYIERTKHFISF-DMEVIPELKNTKSLTPEQQKEKEGELIAKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE+G ++ S + A M R+ F IGGPYG K+ + A+ I
Sbjct: 64 LQPGDVVVLLDEHGKEMRSVEFARWMEKKLVNVNKRLVFIIGGPYGFSQKIYDAAHEKIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 MSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 156
>gi|157364139|ref|YP_001470906.1| hypothetical protein Tlet_1284 [Thermotoga lettingae TMO]
gi|189038650|sp|A8F6Q8.1|RLMH_THELT RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|157314743|gb|ABV33842.1| protein of unknown function DUF163 [Thermotoga lettingae TMO]
Length = 152
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ I ++ +GK + ++ V EYI L + +++ Q++ + K D +K E ++
Sbjct: 1 MKIEIVVIGKLKEY-IRPAVKEYIKMLSSFAEIKLTQIK-HAKGYKDFDKSLKKEAEGII 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ + D+V++LD++G S A +S I F IGGP+G +++RAN
Sbjct: 59 SQLKESDYVILLDQSGRSCDSISFANHFHQLIQINSS-IVFVIGGPFGVDESLKKRANEL 117
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + HQ+A+++L+EQL+R++ I+ Q YH+
Sbjct: 118 LSLSDLTFTHQLAVVILLEQLFRAFKIINNQKYHY 152
>gi|310778299|ref|YP_003966632.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309747622|gb|ADO82284.1| protein of unknown function DUF163 [Ilyobacter polytropus DSM 2926]
Length = 156
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ + +I VGK + ++ +DE++ ++ Y KV+ ++L+ + N + K ++ E M ++
Sbjct: 2 ISVNLICVGKIKEKYIKNGIDEFLKRMSLYAKVKIIELKEDG-NDSNRKQSLEKESMEII 60
Query: 136 NIISSDD-WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + V+LD G ++ SE+M++ + TG S I+F IGG YG ++R+ + +
Sbjct: 61 KTAEKNKGYNVLLDIGGKNLSSEEMSKEIERLTVTGTSTINFIIGGSYGVSEEVRKISQM 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR ++I YH
Sbjct: 121 RLSFSKMTFPHQLMRLILMEQIYRWFSIFNNSKYH 155
>gi|220915376|ref|YP_002490680.1| hypothetical protein A2cp1_0255 [Anaeromyxobacter dehalogenans
2CP-1]
gi|254807103|sp|B8J916.1|RLMH_ANAD2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|219953230|gb|ACL63614.1| protein of unknown function DUF163 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 153
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VG+ RS VDEY +L Y + E +++ K G A+ +E ++
Sbjct: 1 MKVRVVAVGRDRSGLYAPAVDEYAKRLGRYLRFELVEVPEARKLAGTAGAK-GEEGATLL 59
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ + VV+LDE G ++ S AE + G ++ IGG G P++ RA+
Sbjct: 60 AKVGPRERVVVLDERGDELTSVAFAERVRRWMERGQD-VALLIGGSDGLAPEVLARADER 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +S L H++A LVLVEQLYR+ TIL+G+ YH
Sbjct: 119 LAVSRFTLAHRLARLVLVEQLYRAMTILRGEPYH 152
>gi|222100705|ref|YP_002535273.1| hypothetical protein CTN_1731 [Thermotoga neapolitana DSM 4359]
gi|254807137|sp|B9KAC4.1|RLMH_THENN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|221573095|gb|ACM23907.1| Hypothetical Protein CTN_1731 [Thermotoga neapolitana DSM 4359]
Length = 151
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ IR++ GK + +++ VD Y L+ +CK E ++L+ + G V+ +K E +
Sbjct: 1 MRIRIVVGGKLDNF-IKMGVDHYKKFLRRFCKTEIIELKRT--HGGSVEEIVKRETEELK 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ +V++D G ++ SE+ A + + G I+F IGGPYG ++ A+
Sbjct: 58 KRVLPGSLMVVMDRRGENLSSEEFAGFLKEVEMKGKD-ITFLIGGPYGLSEEILSEAHRV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H +++L+++EQ++R++ I++G+NYH+
Sbjct: 117 FSLSRMTFTHGMSVLIVLEQVFRAFKIIRGENYHY 151
>gi|359409862|ref|ZP_09202327.1| Ribosomal RNA large subunit methyltransferase H [Clostridium sp.
DL-VIII]
gi|357168746|gb|EHI96920.1| Ribosomal RNA large subunit methyltransferase H [Clostridium sp.
DL-VIII]
Length = 159
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDED-- 131
+ I +ITVGK + ++ ++EY +L YCK+E ++L P N + + + E
Sbjct: 1 MNITIITVGKLKEKYLKEAIEEYSKRLGRYCKLEIIELADEKTPDNASEKEEEAIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ +D G + SE+ A + + G G S I+F IGG G + R
Sbjct: 61 QGILSKIKDNMFVIAMDLKGKQLTSEEFANYIENLGVMGDSNIAFIIGGSLGISKSVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ANYKLCFSKMTFPHQLFRVMLLEQIYRGFRIMKGEPYH 158
>gi|225181186|ref|ZP_03734632.1| protein of unknown function DUF163 [Dethiobacter alkaliphilus AHT
1]
gi|225168155|gb|EEG76960.1| protein of unknown function DUF163 [Dethiobacter alkaliphilus AHT
1]
Length = 159
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA---QIKDEDM 132
+ I+++TVGK + +++ +DEY +L + +VE +++ G A QI+ ++
Sbjct: 1 MQIQILTVGKIKEKYLKMGIDEYTKRLGPFARVEIREVKDEKTPDGASAAEEEQIQAKET 60
Query: 133 AVMN-IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
A + ++ +++ LD G ++ S + A + +TG S I+F IGG G ++ +
Sbjct: 61 ARLKALLKPGTYIIALDIKGKNLSSPEFASQLDKLATTGQSHITFLIGGSLGLSRELLKM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S+M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 121 ADLRLSFSAMTFPHQLFRLILLEQIYRAYKINRGEPYH 158
>gi|53712760|ref|YP_098752.1| rRNA large subunit methyltransferase [Bacteroides fragilis YCH46]
gi|60680910|ref|YP_211054.1| rRNA large subunit methyltransferase [Bacteroides fragilis NCTC
9343]
gi|336409065|ref|ZP_08589553.1| hypothetical protein HMPREF1018_01569 [Bacteroides sp. 2_1_56FAA]
gi|375357792|ref|YP_005110564.1| hypothetical protein BF638R_1482 [Bacteroides fragilis 638R]
gi|383117631|ref|ZP_09938374.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
3_2_5]
gi|423249434|ref|ZP_17230450.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL03T00C08]
gi|423256253|ref|ZP_17237181.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL03T12C07]
gi|423268631|ref|ZP_17247603.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL05T00C42]
gi|423273809|ref|ZP_17252756.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL05T12C13]
gi|423284812|ref|ZP_17263695.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis HMW 615]
gi|60390886|sp|Q64WA8.1|RLMH_BACFR RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|81316022|sp|Q5LFI4.1|RLMH_BACFN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|52215625|dbj|BAD48218.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60492344|emb|CAH07110.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
gi|251947030|gb|EES87312.1| ribosomal RNA large subunit methyltransferase H [Bacteroides sp.
3_2_5]
gi|301162473|emb|CBW22019.1| conserved hypothetical protein [Bacteroides fragilis 638R]
gi|335947219|gb|EGN09012.1| hypothetical protein HMPREF1018_01569 [Bacteroides sp. 2_1_56FAA]
gi|392649444|gb|EIY43122.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL03T12C07]
gi|392655519|gb|EIY49161.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL03T00C08]
gi|392703915|gb|EIY97056.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL05T00C42]
gi|392707242|gb|EIZ00361.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis CL05T12C13]
gi|404579401|gb|EKA84115.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis HMW 615]
Length = 157
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
+I VG+ +++YI + K++ D+++ KNT + + Q + E +
Sbjct: 5 LIVVGRTVEQHYITAINDYIERTKHFISF-DMEVIPELKNTKSLTPEQQKEKEGELIAKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE+G ++ S + A M R+ F IGGPYG K+ + A+ I
Sbjct: 64 LQPGDVVVLLDEHGKEMRSVEFARWMEKKLVNVNKRLVFIIGGPYGFSQKVYDAAHEKIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 MSKMTFSHQMIRLIFVEQIYRAMTILNGGPYHH 156
>gi|227825032|ref|ZP_03989864.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352683740|ref|YP_004895724.1| hypothetical protein Acin_0340 [Acidaminococcus intestini RyC-MR95]
gi|226905531|gb|EEH91449.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350278394|gb|AEQ21584.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 160
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVED---LQLRSNPKNTGDVKAQI-KDEDMA 133
I + VG+ + ++ E++ +L YC++E ++ + + + + QI + E
Sbjct: 4 ITLACVGRLKEDYLKRAEAEFVKRLGAYCQLETKVIMEEKMPDRVSSQEERQILQKETDR 63
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ II +V++LD G ++ S Q ++ + G S ++F IGGP+G+ ++R+RA+
Sbjct: 64 LLRIIPEHSFVILLDLRGKELSSPQFSQKLEALMVQGVSHLTFVIGGPFGYTDELRKRAD 123
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
S + HQ+ ++L+EQ+YR++ I++ + YHH
Sbjct: 124 FRWSFSPLTFTHQMIRILLLEQVYRAFKIMRNEKYHH 160
>gi|149180962|ref|ZP_01859463.1| hypothetical protein BSG1_10996 [Bacillus sp. SG-1]
gi|148851246|gb|EDL65395.1| hypothetical protein BSG1_10996 [Bacillus sp. SG-1]
Length = 159
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIK-DED 131
+ I ++TVGK + ++ +DEY+ +L Y KVE +++ P+ + + AQ+K E
Sbjct: 1 MNISIVTVGKLKEKYLKQGIDEYLKRLSAYAKVEIIEVSDEKAPEELSETEMAQVKGKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS D V+ L G SE +A+ + + G S+++F IGG G ++ +R
Sbjct: 61 ERILSKISPDAHVIALAIEGKMRTSEDLADNLDKLATYGKSKVTFVIGGSLGLSDEVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN ++ S M HQ+ L LVEQ+YR++ I + + YH
Sbjct: 121 ANETLSFSKMTFPHQLMRLFLVEQVYRAFRINRNEPYH 158
>gi|303248041|ref|ZP_07334307.1| protein of unknown function DUF163 [Desulfovibrio fructosovorans
JJ]
gi|302490598|gb|EFL50503.1| protein of unknown function DUF163 [Desulfovibrio fructosovorans
JJ]
Length = 154
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
P+R+ VG ++ + Y+ L+ Y VE+ +R D + + +E +++
Sbjct: 3 PVRLFVVGAAKAPYFRDAAAHYLTALRRYLPVEEHVVRD--AKASDHERRKAEEGKSLLA 60
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+S D+VV+LDE G + S ++A + SF +GG +G P++ RA++++
Sbjct: 61 KLSPRDFVVVLDEGGRSLPSRELAARLAAFIEDPGRAPSFVVGGAFGLSPEVLARADMTL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L L H++A +VL EQLYR+ I G YHH
Sbjct: 121 ALGPGTLPHELARVVLYEQLYRAAAINAGAPYHH 154
>gi|261338118|ref|ZP_05966002.1| alpha/beta knot family protein [Bifidobacterium gallicum DSM 20093]
gi|270276742|gb|EFA22596.1| alpha/beta knot family protein [Bifidobacterium gallicum DSM 20093]
Length = 159
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I ++TVGK + ++ +DEY ++ +CK++ +Q+ P++ + QIK E
Sbjct: 3 ITILTVGKIKERYLRDAIDEYAKRMSRFCKLQIMQVNDEKTPEHASAAEELQIKQREGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+M I V+ L G + SEQ+A + + G G S + F IGG G P++ +RA+
Sbjct: 63 LMAHIKPQSTVIALAIEGRMLTSEQLAHEIEEFGLRGHSNLVFVIGGSLGLDPRILKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ ++L+EQLYR++ I G+ YH
Sbjct: 123 MLLSFSRMTFPHQLMRVILLEQLYRAYKINAGEPYH 158
>gi|366086960|ref|ZP_09453445.1| rRNA large subunit methyltransferase [Lactobacillus zeae KCTC 3804]
Length = 159
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKD-EDMA 133
I++I VGK + + + EY+ ++ + KV+ +++ P+N + + A++KD E
Sbjct: 3 IKIIGVGKLKEKYFREGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMAEVKDKEGKR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +RAN
Sbjct: 63 ILAKIKDKEWVIALAIEGKQRPSEAFAKEIADLGTYGHSDITFVIGGSLGLSPAVMKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 123 DTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 158
>gi|423228357|ref|ZP_17214763.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
CL02T00C15]
gi|423243620|ref|ZP_17224696.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
CL02T12C06]
gi|392636103|gb|EIY29987.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
CL02T00C15]
gi|392644510|gb|EIY38248.1| ribosomal RNA large subunit methyltransferase H [Bacteroides dorei
CL02T12C06]
Length = 157
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNIISSDDWVVMLDENGL 152
+++Y+ + K++ D+++ KNT ++ + Q + E ++ + D VV+LDE+G
Sbjct: 20 INDYVERTKHFISF-DMEVIPELKNTKNLSMEQQKEKEGELILKALLPGDVVVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
+ S + A + T R+ F IGGPYG P++ + I LS M +HQ+ L+
Sbjct: 79 EFRSVEFANWIERKMHTVNKRLVFIIGGPYGFAPQIYDVTQEKISLSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQLYR+ TIL YHH
Sbjct: 139 VEQLYRAMTILNNGPYHH 156
>gi|429736225|ref|ZP_19270140.1| rRNA large subunit m3Psi methyltransferase RlmH [Selenomonas sp.
oral taxon 138 str. F0429]
gi|429155823|gb|EKX98472.1| rRNA large subunit m3Psi methyltransferase RlmH [Selenomonas sp.
oral taxon 138 str. F0429]
Length = 159
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQI-KDED 131
+ I V+ GK + ++ + EY +L+ Y V +++ R K + KA I + E
Sbjct: 1 MKITVVCAGKLKEKYLREGIAEYEKRLRPYADVRTIEIAEERMKEKPSAAEKADILRREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D ++++LD G ++ SE+ + + G S I+F IGGP+G ++R R
Sbjct: 61 ERLLAQVPQDAYLIVLDVGGAELSSEEFSAKIDTLTVGGRSHIAFLIGGPFGLADEVRRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S L HQ+ L L+EQ+YR++ I +G+ YH
Sbjct: 121 ADLRLSFSHFTLPHQLIRLFLMEQIYRAFKISRGEPYH 158
>gi|119025480|ref|YP_909325.1| rRNA large subunit methyltransferase [Bifidobacterium adolescentis
ATCC 15703]
gi|154486910|ref|ZP_02028317.1| hypothetical protein BIFADO_00743 [Bifidobacterium adolescentis
L2-32]
gi|118765064|dbj|BAF39243.1| hypothetical protein BAD_0462 [Bifidobacterium adolescentis ATCC
15703]
gi|154084773|gb|EDN83818.1| rRNA large subunit m3Psi methyltransferase RlmH [Bifidobacterium
adolescentis L2-32]
Length = 173
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
Query: 64 AGSFISYNCKRAL-PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNT 120
A S I KR L I +ITVGK + ++ + EY +L YCK+ +++ P++
Sbjct: 2 AESVIRALRKRKLVKITLITVGKVKEKYLRDAIAEYSKRLGRYCKLGIVEVADEKTPEHA 61
Query: 121 GD-VKAQIK-DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCI 178
D ++ QIK E + I D +V+ L G + SEQ+A + D G G S I I
Sbjct: 62 SDGLERQIKAKEGERIAKHIRDDAFVIALAIEGKQLTSEQLAAKINDLGLHGTSHIQLII 121
Query: 179 GGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
GG G P + +RA+ + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 122 GGSLGLDPAILKRADYLLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 172
>gi|378823772|ref|ZP_09846363.1| putative rRNA large subunit m3Psi methyltransferase RlmH, partial
[Sutterella parvirubra YIT 11816]
gi|378597405|gb|EHY30702.1| putative rRNA large subunit m3Psi methyltransferase RlmH, partial
[Sutterella parvirubra YIT 11816]
Length = 111
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I DD+VV+LDE+G D+ ++ A+ + G G R+ F IGGP G P ++ RA
Sbjct: 15 ILAAIEPDDFVVVLDEHGADLDTQAFAKALAGWGREG-ERVVFVIGGPDGLSPDVKARAR 73
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+I+LS+M L H + ++L EQ+YR+W+I YH
Sbjct: 74 TTIRLSAMTLPHALCRVLLAEQIYRAWSIYANHPYH 109
>gi|295112154|emb|CBL28904.1| Uncharacterized conserved protein [Synergistetes bacterium SGP1]
Length = 153
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-----V 134
++ VG+ R + + ++Y+ +++ V + T DV A+ +E MA +
Sbjct: 5 ILAVGRSRERALASLAEDYLARIRPAGLV-------GVERTPDVPARSPEEAMAKEGQDI 57
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I D V+L E+G + S A + R+ IGGP+G ++ RA+
Sbjct: 58 LRRIRPRDRTVLLREDGAEYDSPGFASFLAAEMERAGGRLLMVIGGPWGTSDAVKARADT 117
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M H+++ L L EQLYR+++IL+G YHH
Sbjct: 118 GLSLSQMTFTHEMSFLFLAEQLYRAFSILQGTGYHH 153
>gi|256761141|ref|ZP_05501721.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256682392|gb|EEU22087.1| conserved hypothetical protein [Enterococcus faecalis T3]
Length = 159
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I+++TVGK + + ++EY+ +L Y K+E +++ P+ D + Q+K+ E
Sbjct: 1 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +++V +L NG + SE+ ++ + G +G S + F IGG G + +R
Sbjct: 61 QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLIFVIGGSLGLSDSVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N I + HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 121 SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYH 158
>gi|260063162|ref|YP_003196242.1| hypothetical protein RB2501_00091 [Robiginitalea biformata
HTCC2501]
gi|88783256|gb|EAR14428.1| hypothetical protein RB2501_00091 [Robiginitalea biformata
HTCC2501]
Length = 157
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA-QIKD-EDMAVMNI 137
++ VGK + ++ ++ ++ +L +Y E + + + + G VK Q+K+ E A++
Sbjct: 5 LLAVGKTDAGPLEALIADFERRLNHYIPFE-IGIVPDIRTKGKVKPEQLKEKEAEAILRA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D + +LDE G + S A + + G R+ IGG YG +R RA+ ++
Sbjct: 64 LHPQDALWLLDEKGREYSSRGFAGQLQKCMNAGPKRLVLVIGGAYGFSEGLRTRADRTVS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M NHQ+ L+ VEQLYR+++IL+G YH+
Sbjct: 124 LSKMTFNHQVVRLLAVEQLYRAFSILRGDPYHN 156
>gi|389797670|ref|ZP_10200710.1| rRNA large subunit methyltransferase [Rhodanobacter sp. 116-2]
gi|388446744|gb|EIM02764.1| rRNA large subunit methyltransferase [Rhodanobacter sp. 116-2]
Length = 156
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMAVMN 136
R+I VG++ V EY +L + +E ++L+ + G DV+A I+DE A++
Sbjct: 4 RLIAVGERMPGWVAEGFAEYRKRLSHELPLELVELKPGNRGKGRDDVRA-IQDEGAAILA 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASR-ISFCIGGPYGHGPKMRERANIS 195
+ D VV LD G SE++A + AG A R ++F +GGP GH P++ RA+
Sbjct: 63 ALPHDIHVVALDGRGKSWSSEELAAQL--AGWRMAGRDLAFLVGGPDGHAPEVLARADQR 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + LVL EQLYR+ TI+ G YH
Sbjct: 121 WSLGPLTLPHMLVRLVLAEQLYRATTIVSGHPYH 154
>gi|423082953|ref|ZP_17071535.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
difficile 002-P50-2011]
gi|423086476|ref|ZP_17074881.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
difficile 050-P50-2011]
gi|357546909|gb|EHJ28814.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
difficile 050-P50-2011]
gi|357547032|gb|EHJ28931.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
difficile 002-P50-2011]
Length = 159
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I ++ VGK + ++L +DE+ +L YCK+E ++L P+N + +I E
Sbjct: 1 MNISIVVVGKIKEKYLKLGIDEFKKRLSKYCKLEIIELDDEKAPENLSIKEMEIIKYKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + +V+ L +G + SE++A+ M D G S + F IGG G ++ R
Sbjct: 61 KKILGKIKHNSYVIALAIDGKGLSSEELAKTMSDLAVRGNSSLCFIIGGSLGLSDEVLGR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I G+ YH
Sbjct: 121 ADYRLSFSRMTFPHQMMRLILLEQVYRAYRINNGEPYH 158
>gi|417936887|ref|ZP_12580193.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantis X]
gi|343399329|gb|EGV11851.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantis X]
Length = 159
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + VE ++L P D + + + E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFAAVEMIELADEKTPDRASDSENEKILNLEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++VV+L G + SE+ + + A G S ++F IGG G ++++R
Sbjct: 61 NRILSKIGDREFVVVLAIEGKTLSSEEFSSQLEQASINGYSTLTFVIGGSLGLSNEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|322373981|ref|ZP_08048515.1| alpha/beta knot family protein [Streptococcus sp. C150]
gi|321276947|gb|EFX54018.1| alpha/beta knot family protein [Streptococcus sp. C150]
Length = 165
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA 125
+ YN + + +++ITVGK + ++ + EY+ +L + K E ++L P N + +
Sbjct: 1 MCYN--KFMKVKLITVGKLKEKYLKDGISEYVKRLGRFTKFESIELPDEKTPDNASESEN 58
Query: 126 QI--KDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
++ + E +++ + D+V+ L G SEQ A+ + A G S I+F IGG G
Sbjct: 59 KLILEKEGRRILSKVGDRDYVIALAIEGKQFPSEQFAKEIEQATLKGHSEITFIIGGSLG 118
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++++RAN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 119 LSLEVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 164
>gi|374620683|ref|ZP_09693217.1| rRNA large subunit m3Psi methyltransferase RlmH [gamma
proteobacterium HIMB55]
gi|374303910|gb|EHQ58094.1| rRNA large subunit m3Psi methyltransferase RlmH [gamma
proteobacterium HIMB55]
Length = 153
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+RV+TVG + V VDEY ++ VE ++ ++ ++ ++++ DE A+
Sbjct: 1 MRVLTVGTRMPDWVSRGVDEYAKRMPRDLPVEWCEIPASKRSRDTAESRMLDEYQAIERR 60
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ + +V+LD +G + +E +AE + +A ++++F IGGP G P+++ RA
Sbjct: 61 LKDQEIIVVLDVDGKVLSTEAIAEFI-EAWQDLGTKVAFVIGGPDGIHPQLKARAAAKWS 119
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L + L H + ++L EQLYR+W+I G YH
Sbjct: 120 LGRITLPHPLVRVILAEQLYRAWSINAGHPYHR 152
>gi|422760076|ref|ZP_16813838.1| rRNA large subunit methyltransferase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322412911|gb|EFY03819.1| rRNA large subunit methyltransferase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 159
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L P D + Q + E
Sbjct: 1 MKVKLICVGKLKEKYLKDGISEYHKRLSRFCQFEVIELTDEKIPDKASDAENQMILAKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+VV+L G SE ++L+ + G S I+F IGG G ++++R
Sbjct: 61 QRIEKKIGQRDFVVVLAIEGKPFPSETFSQLISETTVKGYSDITFIIGGSLGLDSRIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANVLMSFGLLTLPHQLMRLVLIEQIYRAFMIAQGSPYH 158
>gi|392330304|ref|ZP_10274920.1| rRNA large subunit methyltransferase [Streptococcus canis FSL
Z3-227]
gi|391420176|gb|EIQ82987.1| rRNA large subunit methyltransferase [Streptococcus canis FSL
Z3-227]
Length = 159
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L P + + Q+ E
Sbjct: 1 MKVKLICVGKLKEKYLKDGILEYQKRLSRFCQFEMIELADEKTPDKASEAENQLIMAKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V++L G SE+ ++L+ + + G S I+F IGG G K+++R
Sbjct: 61 QRIEKKIGQRDFVIVLAIEGKQFPSEKFSQLLSETTTKGYSNITFIIGGSLGLDLKIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANVLMSFGLLTLPHQLMRLVLTEQIYRAFMIAQGSPYH 158
>gi|218262205|ref|ZP_03476753.1| hypothetical protein PRABACTJOHN_02427 [Parabacteroides johnsonii
DSM 18315]
gi|423343144|ref|ZP_17320858.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
johnsonii CL02T12C29]
gi|218223536|gb|EEC96186.1| hypothetical protein PRABACTJOHN_02427 [Parabacteroides johnsonii
DSM 18315]
gi|409216820|gb|EKN09803.1| ribosomal RNA large subunit methyltransferase H [Parabacteroides
johnsonii CL02T12C29]
Length = 157
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I +I +GK + ++EY +L +Y E +++ + KN ++ Q + E
Sbjct: 1 MKIALIVIGKTDAGYFVEAINEYKNRLVHYIPFE-MEVIPDIKNVRNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D++V+LDE G + S Q + + T R+ F +GGPYG + + A
Sbjct: 60 ILKTLQPGDYLVLLDEKGKEFTSMQFSAYIERKTHTVPKRLVFVVGGPYGFSDAVYKAAA 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ +EQ+YR+ TIL + YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFIEQIYRAMTILNNEPYHH 156
>gi|16081075|ref|NP_391903.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221311996|ref|ZP_03593843.1| SPOUT methyltransferase superfamily protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221316321|ref|ZP_03598126.1| SPOUT methyltransferase superfamily protein [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221321234|ref|ZP_03602528.1| SPOUT methyltransferase superfamily protein [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221325517|ref|ZP_03606811.1| SPOUT methyltransferase superfamily protein [Bacillus subtilis
subsp. subtilis str. SMY]
gi|402778190|ref|YP_006632134.1| protein YydA [Bacillus subtilis QB928]
gi|452912735|ref|ZP_21961363.1| rRNA large subunit m3Psi methyltransferase RlmH [Bacillus subtilis
MB73/2]
gi|32171785|sp|Q45601.1|RLMH_BACSU RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|1064795|dbj|BAA11281.1| yydA [Bacillus subtilis]
gi|2636570|emb|CAB16060.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|402483369|gb|AFQ59878.1| YydA [Bacillus subtilis QB928]
gi|407962872|dbj|BAM56112.1| rRNA large subunit methyltransferase [Bacillus subtilis BEST7613]
gi|407966884|dbj|BAM60123.1| rRNA large subunit methyltransferase [Bacillus subtilis BEST7003]
gi|452117763|gb|EME08157.1| rRNA large subunit m3Psi methyltransferase RlmH [Bacillus subtilis
MB73/2]
Length = 159
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|302387590|ref|YP_003823412.1| hypothetical protein Closa_3260 [Clostridium saccharolyticum WM1]
gi|302198218|gb|ADL05789.1| protein of unknown function DUF163 [Clostridium saccharolyticum
WM1]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I ++TVGK + + EY +L YCK+E +Q+ P + G+ V+ QI++ E
Sbjct: 1 MKITLVTVGKIKEKFYTDAIGEYSKRLSRYCKLEIIQVPDEKTPDSAGEAVERQIREKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +++ L +G ++ S Q++E + G G S+I F IGG G + +R
Sbjct: 61 ERILSSIKDGAYMIALAIDGENLDSVQLSEKINGLGIGGVSQIVFVIGGSLGLSDAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 ADYRLSFSKMTFPHQLMRVILLEQVYRSYRIINGEPYH 158
>gi|379725033|ref|YP_005317164.1| protein RlmH [Paenibacillus mucilaginosus 3016]
gi|386727782|ref|YP_006194108.1| protein RlmH [Paenibacillus mucilaginosus K02]
gi|378573705|gb|AFC34015.1| RlmH [Paenibacillus mucilaginosus 3016]
gi|384094907|gb|AFH66343.1| protein RlmH [Paenibacillus mucilaginosus K02]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN-TGDVKAQIKD-EDMA 133
I++ITVGK + + + EY +L Y K+ +++ P+ + +AQ+K E
Sbjct: 3 IQMITVGKLKEKYLVEGIAEYTKRLGPYAKISIVEVPDEKTPETLSAAEEAQVKQREGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ +V+ L +G + SE +A + D + G S ++F IGG G P++ RA+
Sbjct: 63 ILAKVNEGAFVIALAIDGKPLSSEDLARQLQDLATYGRSSVAFIIGGSLGLAPEVLARAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + M L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 LKLSFGRMTLPHQLMRLVLVEQVYRAFRIMRGEPYH 158
>gi|321313577|ref|YP_004205864.1| rRNA large subunit methyltransferase [Bacillus subtilis BSn5]
gi|384177682|ref|YP_005559067.1| hypothetical protein I33_4191 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386760727|ref|YP_006233944.1| rRNA large subunit methyltransferase [Bacillus sp. JS]
gi|418030735|ref|ZP_12669220.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|428281695|ref|YP_005563430.1| SPOUT methyltransferase superfamily protein [Bacillus subtilis
subsp. natto BEST195]
gi|443631497|ref|ZP_21115678.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449096477|ref|YP_007428968.1| rRNA large subunit methyltransferase [Bacillus subtilis XF-1]
gi|291486652|dbj|BAI87727.1| SPOUT methyltransferase superfamily protein [Bacillus subtilis
subsp. natto BEST195]
gi|320019851|gb|ADV94837.1| rRNA large subunit methyltransferase [Bacillus subtilis BSn5]
gi|349596906|gb|AEP93093.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|351471794|gb|EHA31907.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|384934010|gb|AFI30688.1| rRNA large subunit methyltransferase [Bacillus sp. JS]
gi|443349302|gb|ELS63358.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449030392|gb|AGE65631.1| rRNA large subunit methyltransferase [Bacillus subtilis XF-1]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|289422560|ref|ZP_06424403.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptostreptococcus
anaerobius 653-L]
gi|429727689|ref|ZP_19262449.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptostreptococcus
anaerobius VPI 4330]
gi|289157132|gb|EFD05754.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptostreptococcus
anaerobius 653-L]
gi|429151822|gb|EKX94673.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptostreptococcus
anaerobius VPI 4330]
Length = 160
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
L I +I+VGK + ++L +DE+ +L Y K+E ++L P+N +I E
Sbjct: 2 LKISIISVGKIKEKYIKLGIDEFSKRLSRYAKLEIIELNDEKAPENLSPRDMEIIKNTEG 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
A+++ I + + + L +G ++ SE +A+ + D +G S I+F IGG G + +
Sbjct: 62 DAILSKIRPNSYTIALAIDGKNLSSESLAKKINDLSVSGNSHINFVIGGSLGLSDSVLKA 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + S+M HQ+ L+L+EQ+YRS+ I + YH
Sbjct: 122 SDFKLSFSAMTFPHQLMRLILLEQIYRSFRINNSEPYH 159
>gi|451822567|ref|YP_007458768.1| ribosomal RNA large subunit methyltransferase H [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788546|gb|AGF59514.1| ribosomal RNA large subunit methyltransferase H [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDED-- 131
+ I +ITVGK + ++ +DEY +L YCK++ ++L P N + + + E
Sbjct: 1 MNITIITVGKIKEKYLRDAIDEYSKRLGRYCKLDIVELADEKTPDNASEKEEEAIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +V+ +D G + SE+ + + + G TG S ++F IGG G + R
Sbjct: 61 QGILSKIKDNMFVIAMDLGGKQLTSEEFSSYIDNLGVTGNSNLAFIIGGSLGISKSVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ANYKLCFSKMTFPHQLFRVMLLEQIYRGFRIMKGEPYH 158
>gi|410463124|ref|ZP_11316660.1| hypothetical protein B193_1167 [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983758|gb|EKO40111.1| hypothetical protein B193_1167 [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 154
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
P+R+I VG+ R+ + Y+ L+ Y E++ R + D + +E V+
Sbjct: 3 PLRLIAVGQIRTPYFREACAHYLTALRRYLPAEEIVARDG--KSADPVRRKAEEAKTVLA 60
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ D+VV+LDE+G + S +A L+ +F IGGP+G + +RA+ +
Sbjct: 61 TLGPRDFVVVLDEHGPSLPSTDLAALLKKLIEDPGRAPAFVIGGPFGLEKAVLDRADRLL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L L H++A +VL EQLYR+ +I G YHH
Sbjct: 121 ALGPGTLPHELARVVLYEQLYRAASINAGAPYHH 154
>gi|296329956|ref|ZP_06872440.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676681|ref|YP_003868353.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296152995|gb|EFG93860.1| rRNA large subunit methyltransferase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414925|gb|ADM40044.1| putative rRNA large subunit methyltransferase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|302877118|ref|YP_003845751.1| hypothetical protein Clocel_4330 [Clostridium cellulovorans 743B]
gi|302579975|gb|ADL53987.1| protein of unknown function DUF163 [Clostridium cellulovorans 743B]
Length = 175
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI---KDE 130
+ I ++TVGK + ++ + EY +L YCK++ +++ P N + K +I E
Sbjct: 17 MKITLVTVGKLKEKYLKEAISEYSKRLSRYCKLDIIEVNDEKTPDNASE-KEEILIKNKE 75
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
A++ I + VV +D G + SE+ + DAG G S I+F IGG G ++
Sbjct: 76 GEAILKHIKDNMLVVAMDLKGKMLSSEEFGTFIKDAGVRGNSDIAFIIGGSLGISDEVLR 135
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ + +S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 136 RADHKLCISKMTFPHQLFRVILLEQIYRGFRIINGEPYH 174
>gi|347751738|ref|YP_004859303.1| ribosomal RNA large subunit methyltransferase H [Bacillus coagulans
36D1]
gi|347584256|gb|AEP00523.1| Ribosomal RNA large subunit methyltransferase H [Bacillus coagulans
36D1]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I ++TVGK + ++ + EY+ +L Y KVE +++ P+ + ++ + E
Sbjct: 3 ISIVTVGKLKEKYLKQGIQEYLKRLSAYAKVEIIEVADEKAPEMLSPAEMELVKQKEGGR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D +V+ L +G SE++A + + G S+I+F IGG G + +R N
Sbjct: 63 ILAKISPDTYVINLAIDGKMKSSEELAGSLDRLATYGKSKIAFVIGGSLGLSQAVLKRGN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M HQ+ L+LVEQ+YR++ I++G+ YH
Sbjct: 123 ESLSFSKMTFPHQLMRLILVEQIYRAFRIIRGEPYH 158
>gi|311070560|ref|YP_003975483.1| rRNA large subunit methyltransferase [Bacillus atrophaeus 1942]
gi|398309006|ref|ZP_10512480.1| rRNA large subunit methyltransferase [Bacillus mojavensis RO-H-1]
gi|419821059|ref|ZP_14344658.1| rRNA large subunit methyltransferase [Bacillus atrophaeus C89]
gi|310871077|gb|ADP34552.1| rRNA large subunit methyltransferase [Bacillus atrophaeus 1942]
gi|388474683|gb|EIM11407.1| rRNA large subunit methyltransferase [Bacillus atrophaeus C89]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|160938308|ref|ZP_02085663.1| hypothetical protein CLOBOL_03204 [Clostridium bolteae ATCC
BAA-613]
gi|158438681|gb|EDP16438.1| hypothetical protein CLOBOL_03204 [Clostridium bolteae ATCC
BAA-613]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I ++TVGK + + + EY +L YCK++ +Q+ P G+ ++ QIK+ E
Sbjct: 1 MKITLVTVGKIKERYFEDAIREYAKRLSRYCKLDIIQVADEKTPDGAGEAIERQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +V+ L G + SE++A + G G I F IGG G + +R
Sbjct: 61 QRILSNIKDGAYVIALAIEGKMLTSEELAGRIQRLGVDGVGHIVFVIGGSLGLSGDVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ ++ S M HQ+ +VL+EQ+YRS+ I+ G+ YH
Sbjct: 121 ADFALSFSKMTFPHQLMRVVLLEQVYRSYRIITGEPYH 158
>gi|154688114|ref|YP_001423275.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
FZB42]
gi|394991554|ref|ZP_10384355.1| rRNA large subunit methyltransferase [Bacillus sp. 916]
gi|189040296|sp|A7ZAL8.1|RLMH_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|154353965|gb|ABS76044.1| YydA [Bacillus amyloliquefaciens FZB42]
gi|393807580|gb|EJD68898.1| rRNA large subunit methyltransferase [Bacillus sp. 916]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGKMKTSEELADTIDKLATYGKSKITFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|403669880|ref|ZP_10935056.1| hypothetical protein KJC8E_13626 [Kurthia sp. JC8E]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I+VGK + +++ ++EY+ +L Y K++ +++ P+ D + +I K E
Sbjct: 1 MSITLISVGKLKEKYLKMGIEEYVKRLNGYTKIDLIEVPDEKAPEQLSDAEMEIVKKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L NG SEQ+++ + + + G S+I F IGG G + +R
Sbjct: 61 ERILAKIPQDAYVMALAINGKMRTSEQLSKDIENCMTYGHSKIVFVIGGSLGLHDDVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + M L HQ+ LVLVEQ+YRS+ I+K + YH
Sbjct: 121 ANDLLSFGKMTLPHQLMKLVLVEQVYRSFRIMKNEPYH 158
>gi|52082602|ref|YP_081393.1| rRNA large subunit methyltransferase [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|404491481|ref|YP_006715587.1| rRNA large subunit methyltransferase [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|81384086|sp|Q65CS8.1|RLMH_BACLD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|52005813|gb|AAU25755.1| conserved hypothetical protein containing DUF163 domain YydA
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52350502|gb|AAU43136.1| rRNA large subunit methyltransferase YydA [Bacillus licheniformis
DSM 13 = ATCC 14580]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++ +GK + ++ +DEYI +L Y KV+ ++L P+N D +I KD E
Sbjct: 3 ISIVAIGKLKEKYLKQGIDEYIKRLSAYAKVDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ M + G S+ +F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKSSEELADNMDRLATYGKSKATFVIGGSLGLSDAVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSRMTFPHQLMRLILLEQVYRAFRINRGEPYH 158
>gi|307687813|ref|ZP_07630259.1| rRNA large subunit methyltransferase [Clostridium cellulovorans
743B]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI---KDE 130
+ I ++TVGK + ++ + EY +L YCK++ +++ P N + K +I E
Sbjct: 1 MKITLVTVGKLKEKYLKEAISEYSKRLSRYCKLDIIEVNDEKTPDNASE-KEEILIKNKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
A++ I + VV +D G + SE+ + DAG G S I+F IGG G ++
Sbjct: 60 GEAILKHIKDNMLVVAMDLKGKMLSSEEFGTFIKDAGVRGNSDIAFIIGGSLGISDEVLR 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ + +S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 120 RADHKLCISKMTFPHQLFRVILLEQIYRGFRIINGEPYH 158
>gi|418964266|ref|ZP_13516083.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383341302|gb|EID19563.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L + K E ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYVKRLGRFTKFEMIELPDEKTPDKASHLENQQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V++L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 NHILSKINDKEFVIVLAIEGQQFPSEEFSKRLSDVTVRGFSDITFVIGGSIGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YRS+ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRSFMIQQGSPYH 158
>gi|452974050|gb|EME73872.1| rRNA large subunit methyltransferase [Bacillus sonorensis L12]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++ +GK + ++ +DEYI +L Y KV+ ++L P+N + +I KD E
Sbjct: 3 ISIVAIGKLKEKYLKQGIDEYIKRLSAYAKVDIIELPDEKAPENLSEQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ M + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKSSEELADNMDRLATYGKSKVTFVIGGSLGLSDAVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSRMTFPHQLMRLILLEQVYRAFRINRGEPYH 158
>gi|421729605|ref|ZP_16168735.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|407076575|gb|EKE49558.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum M27]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSTYAKIDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGKMKTSEELADTIDKLATYGKSKITFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|333397475|ref|ZP_08479288.1| rRNA large subunit methyltransferase [Leuconostoc gelidum KCTC
3527]
gi|406599282|ref|YP_006744628.1| rRNA large subunit methyltransferase [Leuconostoc gelidum JB7]
gi|406370817|gb|AFS39742.1| rRNA large subunit methyltransferase [Leuconostoc gelidum JB7]
Length = 159
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDEDMA 133
I++ITVGK + ++ + EY +L + K+E ++L AQ I E
Sbjct: 3 IKLITVGKLKEKYLKDGIAEYTKRLSRFAKMEIIELIDEKTPEKASMAQNNQIIAKEGGR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I D+V++L G + SE ++ + D +G S I+F IGG G P +++RAN
Sbjct: 63 ISEKIGPRDFVIVLAIEGKQLASEAFSKKLADVTVSGYSDITFVIGGSLGLDPVIKQRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 123 MQMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|332800495|ref|YP_004461994.1| ribosomal RNA large subunit methyltransferase H [Tepidanaerobacter
acetatoxydans Re1]
gi|332698230|gb|AEE92687.1| Ribosomal RNA large subunit methyltransferase H [Tepidanaerobacter
acetatoxydans Re1]
Length = 177
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQI-KDEDMA 133
I +I VGK + + + EY +L YCK+ ++ + P+N + KAQ+ + E +
Sbjct: 21 IDIICVGKIKEKYILDGIKEYKKRLTPYCKLRIIEAIEQKAPENLSEKEKAQVLEREGNS 80
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ +VV L G + SE+MA+ + D G S I+F IGG G P+++ +A+
Sbjct: 81 ILQKLNPSSFVVALCIEGRALFSEEMAKKLSDLMIDGKSHITFIIGGSLGLSPEVKAKAD 140
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+S+ S + HQ+ L+L+EQ+YR + I+ G+ YH
Sbjct: 141 LSLSFSKLTFPHQLMRLILLEQIYRWFKIINGEPYH 176
>gi|419706275|ref|ZP_14233803.1| Ribosomal RNA large subunit methyltransferase H [Streptococcus
salivarius PS4]
gi|383283997|gb|EIC81933.1| Ribosomal RNA large subunit methyltransferase H [Streptococcus
salivarius PS4]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ +++ITVGK + ++ + EY+ +L + K E ++L P N + + ++ + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGISEYVKRLGRFTKFESIELPDEKTPDNASESENKLILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D+V+ L G SEQ A+ + A G S I+F IGG G ++++R
Sbjct: 61 RRILSKVGDRDYVIALAIEGKQFPSEQFAKEIEQATLKGHSEITFIIGGSLGLSLEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|210624117|ref|ZP_03294198.1| hypothetical protein CLOHIR_02154 [Clostridium hiranonis DSM 13275]
gi|210153193|gb|EEA84199.1| hypothetical protein CLOHIR_02154 [Clostridium hiranonis DSM 13275]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I VI VGK + ++L +DE+ +L YCK++ ++L P+ + + + + E
Sbjct: 1 MNINVIGVGKIKEKYLKLGIDEFKKRLSKYCKLDIIELDDEKAPEKLSEKEMIMVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +V+ L +G ++ SE++A+ M D G S I+F IGG G ++ +R
Sbjct: 61 KKILSKIKDTSYVIALAIDGKNLSSEELADKMSDLAVRGNSNITFVIGGSLGLSDEVLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I + YH
Sbjct: 121 ADYKLSFSKMTFPHQLMRLILLEQVYRAYRINNNEPYH 158
>gi|423721686|ref|ZP_17695868.1| rRNA large subunit methyltransferase [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365489|gb|EID42785.1| rRNA large subunit methyltransferase [Geobacillus thermoglucosidans
TNO-09.020]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I +I+VGK + + + EY +L Y KV +++ P++ + +A QIK E
Sbjct: 3 IHIISVGKLKERYLAEGIAEYTKRLSSYAKVGIIEVPDEKAPEHLSEQEAEQIKQKEGKR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D +V+ L G SEQ AE + + G S+I+F IGG G ++ ERA+
Sbjct: 63 ILAKIPDDAYVIALAIEGKMKSSEQFAESLDKLATYGKSKIAFIIGGSLGLSKQVMERAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 EALSFSKMTFPHQLMRLILLEQIYRAFRISRGEPYH 158
>gi|308175726|ref|YP_003922431.1| ribosomal RNA large subunit methyltransferase H [Bacillus
amyloliquefaciens DSM 7]
gi|384161610|ref|YP_005543683.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
TA208]
gi|384166530|ref|YP_005547909.1| ribosomal RNA large subunit methyltransferase H [Bacillus
amyloliquefaciens LL3]
gi|384170723|ref|YP_005552101.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
XH7]
gi|429507291|ref|YP_007188475.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|307608590|emb|CBI44961.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
amyloliquefaciens DSM 7]
gi|328555698|gb|AEB26190.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
TA208]
gi|328914085|gb|AEB65681.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
amyloliquefaciens LL3]
gi|341830002|gb|AEK91253.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
XH7]
gi|429488881|gb|AFZ92805.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGKMKTSEELADTIDKLATYGKSKITFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|150019865|ref|YP_001312119.1| rRNA large subunit methyltransferase [Clostridium beijerinckii
NCIMB 8052]
gi|189040229|sp|A6M3I3.1|RLMH_CLOB8 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|149906330|gb|ABR37163.1| protein of unknown function DUF163 [Clostridium beijerinckii NCIMB
8052]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDE--D 131
+ I +ITVGK + ++ ++EY +L YCK++ ++L P N + + ++ E
Sbjct: 1 MNITIITVGKIKEKYLRDAIEEYSKRLGRYCKLDIVELVDEKTPDNASEKEEEVIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ +D G + SE+ A + + G TG I+F IGG G + R
Sbjct: 61 QGILNKIKDNMFVIAMDLGGKQLTSEEFAGYIDNLGVTGNPNIAFIIGGSLGISKSVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ANYKLCFSKMTFPHQLFRVMLLEQIYRGFRIIKGEPYH 158
>gi|377345220|emb|CCG00900.1| protein containing DUF163 domain [uncultured Flavobacteriia
bacterium]
Length = 97
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
M+ I ++D VV+LDE G +GS Q A+ +G I F IGG +G + ERAN
Sbjct: 1 MSKIDANDLVVLLDERGAQMGSIQFAKWFEKKTISGVRNIVFIIGGAFGFDQAVYERANE 60
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS++ +HQ+ L +EQLYR +ILKG+ YHH
Sbjct: 61 KVSLSNLTFSHQMIRLFFLEQLYRIASILKGEKYHH 96
>gi|301060710|ref|ZP_07201525.1| putative rRNA large subunit m3Psi methyltransferase RlmH [delta
proteobacterium NaphS2]
gi|300445107|gb|EFK09057.1| putative rRNA large subunit m3Psi methyltransferase RlmH [delta
proteobacterium NaphS2]
Length = 156
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAVMN 136
I++I VG +S ++ Y+ +LK+Y VE ++++ G + ++ E ++
Sbjct: 4 IKIIVVGNTKSSFLKTGESLYLKRLKHYTSVEWIEVKPEKATKGTLIERVLTVEGRSIEK 63
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
S D +V+LD +G + SE +++ + G + + F IGGP G ++ +RA+ ++
Sbjct: 64 RFHSRDHIVVLDVSGKEYSSEALSKRIERLSLRGHA-LCFVIGGPLGISKELLDRAHETL 122
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H+++ ++L+EQLYRS+TI++G+ YH
Sbjct: 123 SLSKLTLTHEMSRVLLLEQLYRSFTIIRGEKYH 155
>gi|408790624|ref|ZP_11202241.1| methyltransferase RlmH ybeA [Lactobacillus florum 2F]
gi|408520065|gb|EKK20161.1| methyltransferase RlmH ybeA [Lactobacillus florum 2F]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I++ VGK + Q + EY ++ +C + +Q+ + P+N + Q ++ E +
Sbjct: 3 IKLAVVGKIKEKYFQAAIQEYQKRMGRFCDFQIMQVPDQKAPENLSAAEKQQVMEQEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D+V+ L G SE++A + D + G S ++F IGG G P + +RA+
Sbjct: 63 LLTKIKPRDYVIALAIKGKQYSSEELAATIKDLTTYGHSDLTFVIGGSLGLAPAVLQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ +M L HQ+ +VL EQLYR++ I + + YH
Sbjct: 123 ATLSFGAMTLPHQLMRVVLCEQLYRTFMINQHRPYH 158
>gi|229470420|sp|A1A0L0.2|RLMH_BIFAA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIK-DED 131
+ I +ITVGK + ++ + EY +L YCK+ +++ P++ D ++ QIK E
Sbjct: 1 MKITLITVGKVKEKYLRDAIAEYSKRLGRYCKLGIVEVADEKTPEHASDGLERQIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D +V+ L G + SEQ+A + D G G S I IGG G P + +R
Sbjct: 61 ERIAKHIRDDAFVIALAIEGKQLTSEQLAAKINDLGLHGTSHIQLIIGGSLGLDPAILKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ADYLLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 158
>gi|313145993|ref|ZP_07808186.1| SPOUT methyltransferase superfamily protein [Bacteroides fragilis
3_1_12]
gi|423279486|ref|ZP_17258399.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis HMW 610]
gi|424662506|ref|ZP_18099543.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis HMW 616]
gi|313134760|gb|EFR52120.1| SPOUT methyltransferase superfamily protein [Bacteroides fragilis
3_1_12]
gi|404577784|gb|EKA82521.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis HMW 616]
gi|404585055|gb|EKA89689.1| ribosomal RNA large subunit methyltransferase H [Bacteroides
fragilis HMW 610]
Length = 157
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNI 137
+I VG+ +++YI + K++ D+++ KNT + + Q + E +
Sbjct: 5 LIVVGRTVEQHYITAINDYIERTKHFISF-DMEVIPELKNTKSLTPEQQKEKEGELIGKA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV+LDE+G ++ S + A M R+ F IGGPYG K+ + A+ I
Sbjct: 64 LQPGDVVVLLDEHGKEMRSVEFARWMEKKLVNVNKRLVFIIGGPYGFSQKVYDAAHEKIS 123
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+S M +HQ+ L+ VEQ+YR+ TIL G YHH
Sbjct: 124 MSKMTFSHQMIRLIFVEQMYRAMTILNGGPYHH 156
>gi|227517355|ref|ZP_03947404.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
TX0104]
gi|424677840|ref|ZP_18114690.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV103]
gi|424679409|ref|ZP_18116232.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV116]
gi|424684652|ref|ZP_18121362.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV129]
gi|424688499|ref|ZP_18125104.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV25]
gi|424691254|ref|ZP_18127778.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV31]
gi|424694279|ref|ZP_18130683.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV37]
gi|424696361|ref|ZP_18132714.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV41]
gi|424701583|ref|ZP_18137755.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV62]
gi|424704466|ref|ZP_18140561.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV63]
gi|424711594|ref|ZP_18143806.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV65]
gi|424716374|ref|ZP_18145685.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV68]
gi|424722129|ref|ZP_18151195.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV72]
gi|424724794|ref|ZP_18153732.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV73]
gi|424727502|ref|ZP_18156131.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV81]
gi|424743365|ref|ZP_18171677.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV85]
gi|424755016|ref|ZP_18182905.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV93]
gi|227075225|gb|EEI13188.1| SPOUT methyltransferase superfamily protein [Enterococcus faecalis
TX0104]
gi|402353650|gb|EJU88476.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV103]
gi|402356866|gb|EJU91586.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV116]
gi|402360375|gb|EJU94976.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV25]
gi|402360747|gb|EJU95342.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV129]
gi|402362453|gb|EJU96984.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV31]
gi|402371064|gb|EJV05241.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV37]
gi|402371328|gb|EJV05493.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV62]
gi|402378100|gb|EJV11980.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV41]
gi|402381707|gb|EJV15406.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV63]
gi|402383397|gb|EJV17004.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV65]
gi|402388231|gb|EJV21679.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV68]
gi|402389698|gb|EJV23086.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV72]
gi|402393862|gb|EJV27069.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV73]
gi|402396582|gb|EJV29637.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV81]
gi|402400192|gb|EJV33032.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV85]
gi|402401498|gb|EJV34268.1| rRNA large subunit m3Psi methyltransferase RlmH [Enterococcus
faecalis ERV93]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I+++TVGK + + ++EY+ +L Y K+E +++ P+ D + Q+K+ E
Sbjct: 1 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ +++V +L G + SE+ ++ + G +G S ++F IGG G + +R
Sbjct: 61 QRILGKINDNEYVFVLAIKGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N I + HQ+ LVLVEQ+YR + I+KG+ YH
Sbjct: 121 SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYH 158
>gi|189426673|ref|YP_001953850.1| hypothetical protein Glov_3630 [Geobacter lovleyi SZ]
gi|238692110|sp|B3E3Q8.1|RLMH_GEOLS RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|189422932|gb|ACD97330.1| protein of unknown function DUF163 [Geobacter lovleyi SZ]
Length = 153
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R+I +GK R ++ V EY G+++ Y + +L+ T ++ + E ++
Sbjct: 1 MKLRIIWLGKTRDPWIKQGVTEYSGRIERYLPLAIDELKDEKDAT--LEEGRRREGERLL 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+S + +V LDE G + S + AE +G +G + + F IGG YG ++R RA
Sbjct: 59 KQLSPNAVLVALDERGQQLDSVKFAEFIGKHRDSGTTELVFAIGGSYGFSDEVRSRAGKV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS+M HQ+ L+EQ+YR+ TIL + YHH
Sbjct: 119 LALSAMTFTHQMVRPFLLEQIYRACTILNNEPYHH 153
>gi|452993631|emb|CCQ94847.1| conserved hypothetical protein [Clostridium ultunense Esp]
Length = 159
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTG--DVKAQIKDED 131
+ I++I VGK + ++ + EY +L YC +E +++ P+N D++ E
Sbjct: 1 MNIKIIAVGKIKEKYMREGIKEYSKRLSRYCNLEIIEIGDEKAPENLSKKDIEIIKNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +++ L+ G +I SE++++ + D G + I+F IGG G ++R +
Sbjct: 61 RKLLSKIPQNSFIISLEIEGKEISSEELSKKIEDLMVGGINDITFIIGGSLGLSQEVRNK 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR + I++G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRIILLEQIYRGFRIIRGEPYH 158
>gi|51247684|pdb|1TO0|A Chain A, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247685|pdb|1TO0|B Chain B, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247686|pdb|1TO0|C Chain C, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247687|pdb|1TO0|D Chain D, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247688|pdb|1TO0|E Chain E, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247689|pdb|1TO0|F Chain F, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247690|pdb|1TO0|G Chain G, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
gi|51247691|pdb|1TO0|H Chain H, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
Length = 167
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDXKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKXKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVXKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKXTFPHQLXRLILVEQIYRAFRINRGEPYH 158
>gi|385266924|ref|ZP_10045011.1| ribosomal RNA large subunit methyltransferase H [Bacillus sp. 5B6]
gi|452857603|ref|YP_007499286.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|385151420|gb|EIF15357.1| ribosomal RNA large subunit methyltransferase H [Bacillus sp. 5B6]
gi|452081863|emb|CCP23636.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGKMKTSEELADTIDKLATYGKSKITFIIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|322388477|ref|ZP_08062080.1| alpha/beta knot family protein [Streptococcus infantis ATCC 700779]
gi|419843803|ref|ZP_14367109.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantis ATCC 700779]
gi|321140790|gb|EFX36292.1| alpha/beta knot family protein [Streptococcus infantis ATCC 700779]
gi|385702502|gb|EIG39646.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantis ATCC 700779]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY ++ + VE ++L P D + + + E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFAAVEMIELADEKTPDRASDSENEKILNLEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++VV+L G + SE+ ++ + A G S ++F IGG G ++++R
Sbjct: 61 NRILSKIGDREFVVVLAIEGKILSSEEFSKQLEQASINGYSTLTFVIGGSLGLSNEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVLVEQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLVEQIYRAFTIQQGSPYH 158
>gi|197120664|ref|YP_002132615.1| hypothetical protein AnaeK_0244 [Anaeromyxobacter sp. K]
gi|238689903|sp|B4UM78.1|RLMH_ANASK RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|196170513|gb|ACG71486.1| protein of unknown function DUF163 [Anaeromyxobacter sp. K]
Length = 153
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VG+ RS V+EY +L Y + E +++ K G A+ +E ++
Sbjct: 1 MKVRVVAVGRDRSGLYAPAVEEYAKRLGRYLRFELVEVPEARKLAGTAGAK-GEEGATLL 59
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I + VV+LDE G ++ S AE + G ++ IGG G P++ RA+
Sbjct: 60 AKIGPRERVVVLDERGDELTSVAFAERVRRWMERGQD-VALLIGGSDGLAPEVLARADER 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +S L H++A LVLVEQLYR+ TIL+G+ YH
Sbjct: 119 LAVSRFTLAHRLARLVLVEQLYRAMTILRGEPYH 152
>gi|375364414|ref|YP_005132453.1| hypothetical protein BACAU_3724 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371570408|emb|CCF07258.1| UPF0247 protein [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGEMKTSEELADTIDKLATYGKSKITFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|199597651|ref|ZP_03211079.1| hypothetical protein LRH_11849 [Lactobacillus rhamnosus HN001]
gi|229551267|ref|ZP_04439992.1| SPOUT methyltransferase superfamily protein [Lactobacillus
rhamnosus LMS2-1]
gi|258540976|ref|YP_003175475.1| rRNA large subunit methyltransferase [Lactobacillus rhamnosus Lc
705]
gi|385836696|ref|YP_005874471.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
rhamnosus ATCC 8530]
gi|199591458|gb|EDY99536.1| hypothetical protein LRH_11849 [Lactobacillus rhamnosus HN001]
gi|229315226|gb|EEN81199.1| SPOUT methyltransferase superfamily protein [Lactobacillus
rhamnosus LMS2-1]
gi|257152652|emb|CAR91624.1| Conserved protein [Lactobacillus rhamnosus Lc 705]
gi|355396188|gb|AER65618.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
rhamnosus ATCC 8530]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-----TGDVKAQIKDE 130
I++I VGK + + + EY+ ++ + KV+ +++ P+N DVKA+ D
Sbjct: 3 IKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKAKEGDR 62
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++N I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +
Sbjct: 63 ---ILNKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFVIGGSLGLSPAVMK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 158
>gi|189463601|ref|ZP_03012386.1| hypothetical protein BACCOP_04325 [Bacteroides coprocola DSM 17136]
gi|189429704|gb|EDU98688.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Bacteroides coprocola DSM 17136]
Length = 157
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMAVMNIISSDDWVVMLDENGL 152
+++Y + K+Y D+++ KNT + + Q + E ++ + D V+LDE+G
Sbjct: 20 INDYAERTKHYISF-DIEVIPELKNTKSLSMEQQKEKEGELILKALQPGDVPVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
+ S + A + T + R+ F IGGPYG P + A I LS M +HQ+ L+
Sbjct: 79 EFRSVEFASWVERKMHTVSKRLVFIIGGPYGFSPAVYAVAQEKISLSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQLYRS TIL YHH
Sbjct: 139 VEQLYRSMTILNNGPYHH 156
>gi|300813279|ref|ZP_07093636.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|300512604|gb|EFK39747.1| rRNA large subunit m3Psi methyltransferase RlmH [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR--SNPKNTGDVKAQI--KDED 131
+ I +I+VGK + + ++EY +LK YC+V ++L+ S KN D I E
Sbjct: 1 MEINIISVGKIKEDYFKKAIEEYEKRLKAYCRVNFIELKDESEGKNLSDKDIDIILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I ++++LD G I S + ++ + D G S I F IGG G +++++
Sbjct: 61 KRILEKIKERSFIIVLDILGRSIDSVEFSKKINDIMLDGISSIDFIIGGSLGISQEVKDK 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN S+ S H++ ++L+EQ+YR +TI+ + YH
Sbjct: 121 ANYSLSFSKFTFPHKLMKVILMEQIYRVFTIINNKTYH 158
>gi|288554574|ref|YP_003426509.1| rRNA large subunit methyltransferase [Bacillus pseudofirmus OF4]
gi|288545734|gb|ADC49617.1| rRNA large subunit methyltransferase [Bacillus pseudofirmus OF4]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I+VGK + ++ + EY +L Y K++ +++ P+N + + + E
Sbjct: 3 ISIISVGKLKEKYLKQGIAEYTKRLGAYAKIDLIEVADEKAPENLSEADMVLVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ D V+ L+ G + SEQ+A+ + + G S+I+F IGG G ++ R+N
Sbjct: 63 ILAKIAPDTHVITLEIKGKQLTSEQLAKEIDQLATYGKSKIAFIIGGSLGLSEEVMARSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 YALSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>gi|418070113|ref|ZP_12707390.1| hypothetical protein KIW_09470 [Pediococcus acidilactici MA18/5M]
gi|357536644|gb|EHJ20675.1| hypothetical protein KIW_09470 [Pediococcus acidilactici MA18/5M]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I++I VGK + ++ + EY +L +CK + +++ P++ D + ++ + E
Sbjct: 3 IKIIGVGKLKEKYLKQGIAEYAKRLSKFCKFQIIEVPDEKAPESLSDAQMEMVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L+ G + SE++AE + + G S I+F IGG G P + +RA+
Sbjct: 63 ILAKIKDREYVFTLEIKGKERSSEELAEEIAKLTTYGHSDITFVIGGSLGLSPAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+I L HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 TAISFGRFTLPHQLMRLVLTEQIYRAFMIQSGSPYH 158
>gi|336237191|ref|YP_004589807.1| ribosomal RNA large subunit methyltransferase H [Geobacillus
thermoglucosidasius C56-YS93]
gi|335364046|gb|AEH49726.1| Ribosomal RNA large subunit methyltransferase H [Geobacillus
thermoglucosidasius C56-YS93]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I +I+VGK + + + EY +L Y KV +++ P++ + +A QIK E
Sbjct: 3 IHIISVGKLKERYLAEGIAEYTKRLSSYAKVGIIEVPDEKAPEHLSEQEAEQIKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D +V+ L G SEQ AE + + G S+I+F IGG G ++ ERA+
Sbjct: 63 ILAKIPDDAYVIALAIEGKMKSSEQFAESLDKLATYGKSKIAFIIGGSLGLSKQVMERAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 EALSFSKMTFPHQLMRLILLEQIYRAFRISRGEPYH 158
>gi|450082960|ref|ZP_21852647.1| rRNA large subunit methyltransferase [Streptococcus mutans N66]
gi|449214057|gb|EMC14371.1| rRNA large subunit methyltransferase [Streptococcus mutans N66]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPNEKIPNNASQAQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEKFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+I + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASILMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|389755604|ref|ZP_10191284.1| rRNA large subunit methyltransferase [Rhodanobacter sp. 115]
gi|388432211|gb|EIL89226.1| rRNA large subunit methyltransferase [Rhodanobacter sp. 115]
Length = 157
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMAVMN 136
R+I VG++ V EY +L + +E ++L+ + G DV+A ++DE A++
Sbjct: 5 RIIAVGERMPGWVAEGFAEYRKRLSHELPLELIELKPGVRGKGRDDVRA-MQDEGAAILA 63
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ D VV LD +G SE++AE + G ++F IGGP GH ++ RA+
Sbjct: 64 ALPRDTHVVALDGHGKAWSSEELAEQLAKWRMAGRD-LAFLIGGPDGHAAEVLARADQRW 122
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + LVL EQLYR+ TI+ G YH
Sbjct: 123 SLGPLTLPHMLVRLVLAEQLYRATTIMAGHPYH 155
>gi|346226847|ref|ZP_08847989.1| ribosomal RNA large subunit methyltransferase H [Anaerophaga
thermohalophila DSM 12881]
Length = 157
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ I ++ VGK ++ V Y ++K+Y E ++ + +N G + +I + E
Sbjct: 1 MKILLLKVGKTSDEWLREGVGRYYRRIKHYLPFET-KIIPDIRNAGKITPEILKQMEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +V+LDE G S + A + + G R+ F IGG +G + ERA+
Sbjct: 60 ILKAVEKRDRLVLLDEKGKLFSSREFAGFIENQMIGGVHRLVFVIGGAWGFSDAVYERAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ I LS M +HQ+ L+ EQLYR+ +IL + YHH
Sbjct: 120 LKISLSPMTFSHQLVRLIFAEQLYRALSILNNEPYHH 156
>gi|300172615|ref|YP_003771780.1| hypothetical protein LEGAS_0313 [Leuconostoc gasicomitatum LMG
18811]
gi|299886993|emb|CBL90961.1| UPF0247 protein [Leuconostoc gasicomitatum LMG 18811]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I++ITVGK + ++ + EY +L + K+E ++L P+ + I E
Sbjct: 3 IKLITVGKLKEKYLKDGIAEYTKRLSRFAKMEIIELIDEKTPEKASIAQNNQIIAKEGGR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I D+V++L G + SE ++ + D +G S I+F IGG G P +++RAN
Sbjct: 63 IAEKIGPRDFVIVLAIEGKQLASEAFSKKLADVTVSGYSDITFVIGGSLGIDPLIKQRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 123 MKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|227431455|ref|ZP_03913504.1| SPOUT methyltransferase superfamily protein [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352821|gb|EEJ42998.1| SPOUT methyltransferase superfamily protein [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + + + EY +L +CKV+ ++L P+N + + + E
Sbjct: 1 MNIKLITVGKLKEKYLTEGIAEYTKRLSRFCKVQVVELIDEKTPENASEAQNNQIMAREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I S D+V++L G SE+ ++ + G S I+F +GG G +++R
Sbjct: 61 ERIQAKIGSRDYVIVLAIEGKQFPSEEFSQKLEAIVVNGYSDITFIVGGSLGLSKAIKQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGLLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|430757880|ref|YP_007207484.1| hypothetical protein A7A1_2388 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430022400|gb|AGA23006.1| Hypothetical protein Yyda [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 159
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDAVIKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|270289914|ref|ZP_06196140.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|270281451|gb|EFA27283.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I+++ VGK + ++ + EY +L +CK + +++ P++ D + ++ + E
Sbjct: 3 IKIVGVGKLKEKYLKQGIAEYAKRLSKFCKFQIIEVPDEKAPESLSDAQMEMVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L+ G + SE++AE + + G S I+F IGG G P + +RA+
Sbjct: 63 ILAKIKDREYVFTLEIKGKERSSEELAEEIAKLTTYGHSNITFVIGGSLGLSPAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+I L HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 TAISFGRFTLPHQLMRLVLTEQIYRAFMIQSGSPYH 158
>gi|407980367|ref|ZP_11161157.1| rRNA large subunit methyltransferase [Bacillus sp. HYC-10]
gi|407412902|gb|EKF34654.1| rRNA large subunit methyltransferase [Bacillus sp. HYC-10]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I +ITVGK + ++ + EY +L+ Y K++ ++L P++ + +I KD E
Sbjct: 1 MNISIITVGKLKEKYLKQGIAEYTKRLQAYAKIDIIELADEKAPEHLSEQDMKIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D V+ L G SE++A+ + + G S++ F IGG G + +R
Sbjct: 61 ERILSKINPDAHVIALAIEGKMKSSEELADTIDKLATYGKSKVCFVIGGSLGLSDAVMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 121 ANEKLSFSRMTFPHQLMRLVLVEQIYRAFRIVRGEPYH 158
>gi|291523669|emb|CBK81962.1| conserved hypothetical protein TIGR00246 [Coprococcus catus GD/7]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Query: 78 IRVITVGK-KRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-EDM 132
I ++TVGK K VQ + EY +L YCK+E +++ ++ K + ++ QIK+ E
Sbjct: 3 ITLVTVGKIKEKFFVQAIA-EYSKRLSRYCKLEIIEVADEKTPDKASEALELQIKEKEGE 61
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ I D +V+ L G SE++A + G G S ++F IGG G P + RA
Sbjct: 62 RILKSIKDDSYVIALAIEGKMRSSEELAARIEKLGIGGESHLTFVIGGSLGLAPAVLNRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 122 DEKLSFSPMTFPHQLMRVILLEQIYRSYRIINHEPYH 158
>gi|449908108|ref|ZP_21793496.1| rRNA large subunit methyltransferase [Streptococcus mutans OMZ175]
gi|450036036|ref|ZP_21835309.1| rRNA large subunit methyltransferase [Streptococcus mutans M21]
gi|450112401|ref|ZP_21863200.1| rRNA large subunit methyltransferase [Streptococcus mutans SM6]
gi|449194660|gb|EMB96008.1| rRNA large subunit methyltransferase [Streptococcus mutans M21]
gi|449222163|gb|EMC21898.1| rRNA large subunit methyltransferase [Streptococcus mutans SM6]
gi|449263182|gb|EMC60614.1| rRNA large subunit methyltransferase [Streptococcus mutans OMZ175]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPDEKIPNNASQAQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEEFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+I + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASILMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|313885532|ref|ZP_07819282.1| rRNA large subunit m3Psi methyltransferase RlmH [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619262|gb|EFR30701.1| rRNA large subunit m3Psi methyltransferase RlmH [Eremococcus
coleocola ACS-139-V-Col8]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I +I+VGK + ++ ++EY ++ Y KV L++ + +N + + + + E
Sbjct: 1 MNIDIISVGKLKEKYLKQGIEEYHKRMGPYAKVNLLEVADEATAENMSETEIEQVLAKES 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I++D V++L G I SE +A+ + D + G+S+++F IGG G PK++ R
Sbjct: 61 DRILSHIANDRKVIVLAIEGKLISSEDLAQQLDDYATYGSSKVTFVIGGSLGLHPKVKAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + + L HQ+ +VL+EQ+YR++ I+ G YH
Sbjct: 121 ADWMVSFGRITLPHQLMRMVLMEQIYRAYRIIHGHAYH 158
>gi|210630918|ref|ZP_03296663.1| hypothetical protein COLSTE_00548 [Collinsella stercoris DSM 13279]
gi|210160233|gb|EEA91204.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Collinsella stercoris DSM 13279]
Length = 156
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAV 134
+ I V+ VGK + EY+ +L Y V+ +++ +P +G +A + E +
Sbjct: 1 MKITVVAVGKLKERFWADACAEYVKRLGAYATVKMVEVADRDPAKSGGEEAGREFEGKGI 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I VV+LD G + SE++A + D G S I+F IGG G P++R RA+
Sbjct: 61 LAAIPERSHVVLLDIGGKERSSEEIAAHLDDLMLRGESSITFVIGGSCGVSPEVRARADE 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + L H +A +VL+EQ+YR++ I++G+ YH
Sbjct: 121 RLSFGRITLPHNLARVVLLEQVYRAFKIMRGEPYH 155
>gi|410452313|ref|ZP_11306305.1| ribosomal RNA large subunit methyltransferase H [Bacillus
bataviensis LMG 21833]
gi|409934632|gb|EKN71514.1| ribosomal RNA large subunit methyltransferase H [Bacillus
bataviensis LMG 21833]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKA-QIKD-ED 131
+ I +ITVGK + ++ ++EY+ +L Y KV+ +++ P+ ++ Q+K E
Sbjct: 1 MNISIITVGKLKEKYLKQGIEEYLKRLTAYAKVDVIEVADEKAPEELSVLEMLQVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D +V+ L G SE++A+ + + G S+I+F IGG G + +R
Sbjct: 61 ERILAKISQDTYVIALAIQGKLASSEELADSLDKLATYGKSKIAFVIGGSLGLSEDVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N + S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 121 SNEELSFSRMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|357061438|ref|ZP_09122190.1| ribosomal RNA large subunit methyltransferase H [Alloprevotella
rava F0323]
gi|355373926|gb|EHG21229.1| ribosomal RNA large subunit methyltransferase H [Alloprevotella
rava F0323]
Length = 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMA 133
+ + I VGK + + +Y ++ +Y E +Q + KN + Q E +
Sbjct: 1 MKVVFIQVGKTVDKHLIALAADYAERITHYLPFE-VQTVPDLKNNKALSFEQQKVAEGVG 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ ++ + D VV+LDE G ++ S + A + + G R+ F IGGPYG + + A
Sbjct: 60 IRQLLKAGDHVVLLDEGGKELSSFEFANHVQRRLNGGGRRLVFIIGGPYGFSQDIYDLAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR+ TIL G+ YHH
Sbjct: 120 EKISLSRMTFSHQMVRLFFIEQLYRAMTILNGEPYHH 156
>gi|406658901|ref|ZP_11067041.1| alpha/beta knot family protein [Streptococcus iniae 9117]
gi|405579116|gb|EKB53230.1| alpha/beta knot family protein [Streptococcus iniae 9117]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQI-KDED 131
+ I++I VGK + ++ + EY +L +CK E ++L ++ K + K +I + E
Sbjct: 1 MRIKIICVGKLKEKYLKDGIAEYQKRLSRFCKFEIVELADEKTPDKASSSEKDRIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I D+V+ L G + SE ++ + + G S I+F IGG G +++ R
Sbjct: 61 QRILNKIGQRDYVIALAIEGKQLASEAFSQQLDNVSINGISDITFIIGGSLGLTKEVKSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANMLMSFGLLTLPHQLMRLVLIEQIYRAFMITEGSPYH 158
>gi|350268313|ref|YP_004879620.1| hypothetical protein GYO_4431 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601200|gb|AEP88988.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 159
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILAKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|323342381|ref|ZP_08082613.1| alpha/beta knot family protein [Erysipelothrix rhusiopathiae ATCC
19414]
gi|336066817|ref|YP_004561675.1| SPOUT methyltransferase superfamily protein [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|322463493|gb|EFY08687.1| alpha/beta knot family protein [Erysipelothrix rhusiopathiae ATCC
19414]
gi|334296763|dbj|BAK32634.1| SPOUT methyltransferase superfamily protein [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 151
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 91 VQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDEN 150
+Q ++ EY +LK VE ++L ++ N DV + I+DE ++ I D+VV++D +
Sbjct: 15 MQALIQEYEKRLKPIHSVEMIELTNS--NKSDVTSIIEDECQRILEKIDDRDYVVLMDLS 72
Query: 151 GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210
G D+ S M+E + D G I+F IGG +G +RER+N K+S++ HQ+ L
Sbjct: 73 GKDLDSVSMSEKIMDLIDMGKP-ITFIIGGSHGVNQSIRERSNYRWKISNLTFPHQLVRL 131
Query: 211 VLVEQLYRSWTILKGQNYH 229
+L EQ+YR + I K YH
Sbjct: 132 MLYEQVYRFFMISKNHPYH 150
>gi|334342373|ref|YP_004547353.1| hypothetical protein [Desulfotomaculum ruminis DSM 2154]
gi|334093727|gb|AEG62067.1| protein of unknown function DUF163 [Desulfotomaculum ruminis DSM
2154]
Length = 159
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA---QIKDEDM-A 133
I +++VGK + + V EY +L Y K+E L++ P +A Q++ ++
Sbjct: 3 ITILSVGKLKEKYLVDGVKEYSKRLGPYAKLEILEVPDEPCPENAPRAVEDQVRQKEADK 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + ++++LD G + SE+MA M + +G S I+F IGG G +RERA+
Sbjct: 63 LAKRLREGTYLIVLDPRGKMLSSEEMAARMEKSALSGHSDITFIIGGSLGLADSLRERAH 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + LS+M HQ+ L+LVEQ+YR + I++ + YH
Sbjct: 123 LLLSLSNMTFPHQLVRLLLVEQIYRWFKIIRNEPYH 158
>gi|218281572|ref|ZP_03488001.1| hypothetical protein EUBIFOR_00566 [Eubacterium biforme DSM 3989]
gi|218217361|gb|EEC90899.1| hypothetical protein EUBIFOR_00566 [Eubacterium biforme DSM 3989]
Length = 157
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI----KDEDMA 133
I++I +GK + +Q + EY+ +L +CK +++++ +A++ + E
Sbjct: 2 IKLIAIGKNKDKALQSLEKEYMKRLSAFCKFSEIEVKDEANEHVSREAEVLLVKEKEGNR 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
V+ +S D+VV+LD +G I SE A+ + D S I F I G G K+ RAN
Sbjct: 62 VLEKLSDQDFVVLLDLHGKMIDSETFAKNL-DTWQMKHSNIVFVIAGSLGPSEKLVSRAN 120
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
KLS + H + ++++EQ+YR + I G+NYH
Sbjct: 121 YRWKLSDLTFTHLMTRVLMLEQIYRGFMINNGRNYH 156
>gi|357057644|ref|ZP_09118502.1| hypothetical protein HMPREF9334_00219 [Selenomonas infelix ATCC
43532]
gi|355374892|gb|EHG22183.1| hypothetical protein HMPREF9334_00219 [Selenomonas infelix ATCC
43532]
Length = 159
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKV---EDLQLRSNPKNTGDVKAQ-IKDED 131
+ I ++ GK + ++ + EY +L+ Y V E + R K + KA+ I+ E
Sbjct: 1 MKITIVCAGKIKEKYLRDGIAEYEKRLRPYADVRTHEIAEERMKEKPSAAEKAETIRREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + +++LD G ++ SE++A + TG S I+F IGGP+G ++R R
Sbjct: 61 ERLLAQVPQGAHLIVLDVGGAELSSEELAAKIDHLVVTGESHIAFLIGGPFGLADELRRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S HQ+ L LVEQ+YR++ I +G+ YH
Sbjct: 121 ADLRLSFSRFTFPHQLIRLFLVEQIYRTFKISRGEPYH 158
>gi|383752954|ref|YP_005431857.1| putative ribosomal RNA large subunit methyltransferase H
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365006|dbj|BAL81834.1| putative ribosomal RNA large subunit methyltransferase H
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 159
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I ++ GK + + + E++ +LK + +VE + ++ NP + IK E
Sbjct: 1 MKITIVCAGKIKEKYLTAGIAEFMKRLKPFAQVEIREIHEEKMPDNPSAAEKEQVLIK-E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ ++ ++ +LD G + SE++A + G +G S I+F IGG +G P +R+
Sbjct: 60 GEKLLKLVPEGSYLFVLDVFGKEKSSEELASSIDKLGLSGRSNITFLIGGAFGLSPAVRK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 120 AADELLSFSRMTFTHQMVRLLLVEQIYRAFKINRGEKYH 158
>gi|171910889|ref|ZP_02926359.1| hypothetical protein VspiD_06935 [Verrucomicrobium spinosum DSM
4136]
Length = 117
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 60/91 (65%)
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ D W ++LDE G + S ++A+ + +G R+SF IGG GH PK++ AN L
Sbjct: 25 AKDSWCIVLDEKGRHLTSMELAKWIEKQELSGRKRVSFLIGGADGHAPKVKAAANELWCL 84
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+M L H++AL++L+EQ+YR ++IL+G YH
Sbjct: 85 SAMTLQHEVALVLLLEQIYRGYSILRGDPYH 115
>gi|24380490|ref|NP_722445.1| rRNA large subunit methyltransferase [Streptococcus mutans UA159]
gi|290581419|ref|YP_003485811.1| hypothetical protein SmuNN2025_1893 [Streptococcus mutans NN2025]
gi|387787100|ref|YP_006252196.1| rRNA large subunit methyltransferase [Streptococcus mutans LJ23]
gi|397650683|ref|YP_006491210.1| rRNA large subunit methyltransferase [Streptococcus mutans GS-5]
gi|449865083|ref|ZP_21778795.1| rRNA large subunit methyltransferase [Streptococcus mutans U2B]
gi|449869060|ref|ZP_21779959.1| rRNA large subunit methyltransferase [Streptococcus mutans 8ID3]
gi|449876351|ref|ZP_21782752.1| rRNA large subunit methyltransferase [Streptococcus mutans S1B]
gi|449884124|ref|ZP_21785513.1| rRNA large subunit methyltransferase [Streptococcus mutans SA38]
gi|449893518|ref|ZP_21788781.1| rRNA large subunit methyltransferase [Streptococcus mutans SF12]
gi|449899275|ref|ZP_21790959.1| rRNA large subunit methyltransferase [Streptococcus mutans R221]
gi|449903578|ref|ZP_21792198.1| rRNA large subunit methyltransferase [Streptococcus mutans M230]
gi|449919581|ref|ZP_21798028.1| rRNA large subunit methyltransferase [Streptococcus mutans 1SM1]
gi|449925995|ref|ZP_21800542.1| rRNA large subunit methyltransferase [Streptococcus mutans 4SM1]
gi|449942132|ref|ZP_21805870.1| rRNA large subunit methyltransferase [Streptococcus mutans 11A1]
gi|449954065|ref|ZP_21809210.1| rRNA large subunit methyltransferase [Streptococcus mutans 4VF1]
gi|449966074|ref|ZP_21812179.1| rRNA large subunit methyltransferase [Streptococcus mutans 15VF2]
gi|449971155|ref|ZP_21814251.1| rRNA large subunit methyltransferase [Streptococcus mutans 2VS1]
gi|449974375|ref|ZP_21815256.1| rRNA large subunit methyltransferase [Streptococcus mutans 11VS1]
gi|449980306|ref|ZP_21817115.1| rRNA large subunit methyltransferase [Streptococcus mutans 5SM3]
gi|449984982|ref|ZP_21819429.1| rRNA large subunit methyltransferase [Streptococcus mutans NFSM2]
gi|449989400|ref|ZP_21821045.1| rRNA large subunit methyltransferase [Streptococcus mutans NVAB]
gi|449995186|ref|ZP_21822876.1| rRNA large subunit methyltransferase [Streptococcus mutans A9]
gi|450002350|ref|ZP_21826025.1| rRNA large subunit methyltransferase [Streptococcus mutans N29]
gi|450007614|ref|ZP_21827866.1| rRNA large subunit methyltransferase [Streptococcus mutans NMT4863]
gi|450011591|ref|ZP_21829232.1| rRNA large subunit methyltransferase [Streptococcus mutans A19]
gi|450024012|ref|ZP_21830984.1| rRNA large subunit methyltransferase [Streptococcus mutans U138]
gi|450029229|ref|ZP_21832657.1| rRNA large subunit methyltransferase [Streptococcus mutans G123]
gi|450048270|ref|ZP_21839682.1| rRNA large subunit methyltransferase [Streptococcus mutans N34]
gi|450051873|ref|ZP_21841065.1| rRNA large subunit methyltransferase [Streptococcus mutans NFSM1]
gi|450057703|ref|ZP_21842695.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML4]
gi|450093113|ref|ZP_21856447.1| rRNA large subunit methyltransferase [Streptococcus mutans W6]
gi|450098029|ref|ZP_21857779.1| rRNA large subunit methyltransferase [Streptococcus mutans SF1]
gi|450107008|ref|ZP_21860805.1| rRNA large subunit methyltransferase [Streptococcus mutans SF14]
gi|450122310|ref|ZP_21866703.1| rRNA large subunit methyltransferase [Streptococcus mutans ST6]
gi|450134685|ref|ZP_21871121.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML8]
gi|450137893|ref|ZP_21871888.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML1]
gi|450145884|ref|ZP_21874795.1| rRNA large subunit methyltransferase [Streptococcus mutans 1ID3]
gi|450150340|ref|ZP_21876543.1| rRNA large subunit methyltransferase [Streptococcus mutans 14D]
gi|450161937|ref|ZP_21880719.1| rRNA large subunit methyltransferase [Streptococcus mutans 66-2A]
gi|450167250|ref|ZP_21882574.1| rRNA large subunit methyltransferase [Streptococcus mutans B]
gi|450171421|ref|ZP_21883992.1| rRNA large subunit methyltransferase [Streptococcus mutans SM4]
gi|450174988|ref|ZP_21884919.1| rRNA large subunit methyltransferase [Streptococcus mutans SM1]
gi|32171827|sp|Q8DRQ7.1|RLMH_STRMU RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|24378522|gb|AAN59751.1|AE015037_2 conserved hypothetical protein [Streptococcus mutans UA159]
gi|254998318|dbj|BAH88919.1| hypothetical protein [Streptococcus mutans NN2025]
gi|379133501|dbj|BAL70253.1| rRNA large subunit methyltransferase [Streptococcus mutans LJ23]
gi|392604252|gb|AFM82416.1| rRNA large subunit methyltransferase [Streptococcus mutans GS-5]
gi|449148762|gb|EMB52603.1| rRNA large subunit methyltransferase [Streptococcus mutans 1ID3]
gi|449149159|gb|EMB52973.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML8]
gi|449151009|gb|EMB54755.1| rRNA large subunit methyltransferase [Streptococcus mutans 11A1]
gi|449158627|gb|EMB62040.1| rRNA large subunit methyltransferase [Streptococcus mutans 8ID3]
gi|449159329|gb|EMB62680.1| rRNA large subunit methyltransferase [Streptococcus mutans 1SM1]
gi|449161034|gb|EMB64254.1| rRNA large subunit methyltransferase [Streptococcus mutans 4SM1]
gi|449170437|gb|EMB73146.1| rRNA large subunit methyltransferase [Streptococcus mutans 15VF2]
gi|449171236|gb|EMB73909.1| rRNA large subunit methyltransferase [Streptococcus mutans 4VF1]
gi|449172427|gb|EMB75054.1| rRNA large subunit methyltransferase [Streptococcus mutans 2VS1]
gi|449177073|gb|EMB79389.1| rRNA large subunit methyltransferase [Streptococcus mutans 5SM3]
gi|449178410|gb|EMB80673.1| rRNA large subunit methyltransferase [Streptococcus mutans 11VS1]
gi|449179680|gb|EMB81877.1| rRNA large subunit methyltransferase [Streptococcus mutans NFSM2]
gi|449182643|gb|EMB84659.1| rRNA large subunit methyltransferase [Streptococcus mutans NVAB]
gi|449183257|gb|EMB85246.1| rRNA large subunit methyltransferase [Streptococcus mutans N29]
gi|449184715|gb|EMB86640.1| rRNA large subunit methyltransferase [Streptococcus mutans A9]
gi|449186149|gb|EMB87993.1| rRNA large subunit methyltransferase [Streptococcus mutans NMT4863]
gi|449189292|gb|EMB90960.1| rRNA large subunit methyltransferase [Streptococcus mutans A19]
gi|449192533|gb|EMB93950.1| rRNA large subunit methyltransferase [Streptococcus mutans U138]
gi|449194650|gb|EMB96000.1| rRNA large subunit methyltransferase [Streptococcus mutans G123]
gi|449197029|gb|EMB98250.1| rRNA large subunit methyltransferase [Streptococcus mutans N34]
gi|449201470|gb|EMC02466.1| rRNA large subunit methyltransferase [Streptococcus mutans NFSM1]
gi|449204879|gb|EMC05657.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML4]
gi|449217474|gb|EMC17524.1| rRNA large subunit methyltransferase [Streptococcus mutans W6]
gi|449221906|gb|EMC21656.1| rRNA large subunit methyltransferase [Streptococcus mutans SF1]
gi|449222579|gb|EMC22302.1| rRNA large subunit methyltransferase [Streptococcus mutans SF14]
gi|449228021|gb|EMC27409.1| rRNA large subunit methyltransferase [Streptococcus mutans ST6]
gi|449233752|gb|EMC32808.1| rRNA large subunit methyltransferase [Streptococcus mutans 14D]
gi|449234674|gb|EMC33670.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML1]
gi|449237989|gb|EMC36780.1| rRNA large subunit methyltransferase [Streptococcus mutans 66-2A]
gi|449238666|gb|EMC37419.1| rRNA large subunit methyltransferase [Streptococcus mutans B]
gi|449244078|gb|EMC42468.1| rRNA large subunit methyltransferase [Streptococcus mutans SM4]
gi|449247597|gb|EMC45872.1| rRNA large subunit methyltransferase [Streptococcus mutans SM1]
gi|449249276|gb|EMC47415.1| rRNA large subunit methyltransferase [Streptococcus mutans SA38]
gi|449252555|gb|EMC50531.1| rRNA large subunit methyltransferase [Streptococcus mutans S1B]
gi|449255800|gb|EMC53641.1| rRNA large subunit methyltransferase [Streptococcus mutans SF12]
gi|449258598|gb|EMC56167.1| rRNA large subunit methyltransferase [Streptococcus mutans R221]
gi|449260830|gb|EMC58322.1| rRNA large subunit methyltransferase [Streptococcus mutans M230]
gi|449264488|gb|EMC61828.1| rRNA large subunit methyltransferase [Streptococcus mutans U2B]
Length = 159
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPDEKIPNNASQAQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEKFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+I + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASILMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|406906976|gb|EKD47960.1| Ribosomal RNA large subunit methyltransferase H [uncultured
bacterium]
Length = 135
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 99 IGKLK-YYCKVE-DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGS 156
+GKLK Y ++E + R P ++K E + I D +V++LD G S
Sbjct: 6 VGKLKSEYIEIESEFVKRLRPFANLEIKTF--KESALLSKSIPKDAFVIVLDTGGKQFSS 63
Query: 157 EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQL 216
E+ ++++ G+ I F IGGPYG + +N+ + S M HQ A ++L+EQ+
Sbjct: 64 EEFSKIISKEKDFGSGHIVFVIGGPYGLNEALP--SNLKLSFSRMTFTHQYAYIILLEQI 121
Query: 217 YRSWTILKGQNYHH 230
YR++TIL G+NYHH
Sbjct: 122 YRAFTILIGKNYHH 135
>gi|335031790|ref|ZP_08525211.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
anginosus SK52 = DSM 20563]
gi|333768730|gb|EGL45899.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
anginosus SK52 = DSM 20563]
Length = 159
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EYI +L + K E ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYIKRLGRFTKFEMIELPDEKTPDKASHLENQQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V++L G SE+ ++ + + G S I+F IGG G +++R
Sbjct: 61 TRILSKINDKEFVIVLAIEGQQFPSEEFSKRLSNVTVRGFSDITFVIGGSLGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLMMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|160916095|ref|ZP_02078302.1| hypothetical protein EUBDOL_02122 [Eubacterium dolichum DSM 3991]
gi|158431819|gb|EDP10108.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Eubacterium dolichum DSM 3991]
Length = 158
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
IR+I VGK + + ++V+EY +L+ + K+E +++ S P + D A +K+ E
Sbjct: 2 IRIIAVGKLKEKALSMLVEEYTKRLRPFTKLEIVEVADESAPMSNSDANNAMVKEKEGER 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +++V++LD G + SE A+ + S ++F I G G G + R N
Sbjct: 62 ILAKIKDNEYVILLDLWGEMMSSEAFAKKLEQLQIYSTSNLTFVIAGSLGPGENVYRRCN 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+KLS M HQ+ ++L+EQ+YR++ I YH
Sbjct: 122 ARLKLSEMTFTHQMTRVILLEQVYRAYMIRNHNPYH 157
>gi|121533966|ref|ZP_01665792.1| protein of unknown function DUF163 [Thermosinus carboxydivorans
Nor1]
gi|121307477|gb|EAX48393.1| protein of unknown function DUF163 [Thermosinus carboxydivorans
Nor1]
Length = 159
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I ++ VGK + + + EY +L YC++E +++ P + + + + E
Sbjct: 1 MKITIVAVGKIKEKYLTAGIAEYTKRLGPYCRLEIVEVDEERMPADPSPAEKEKVLAREG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + ++++LD G + SE++AE + G S ++F IGG +G P +
Sbjct: 61 ERLLKHVRDGSYLIVLDVRGKALSSEELAEKIDALALAGQSDVTFVIGGAFGLAPAVVAA 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ L+LVEQLYR++ I +G+ YH
Sbjct: 121 ANERLSFSRMTFTHQMIRLILVEQLYRAFKISRGEPYH 158
>gi|450088405|ref|ZP_21854782.1| rRNA large subunit methyltransferase [Streptococcus mutans NV1996]
gi|449216592|gb|EMC16697.1| rRNA large subunit methyltransferase [Streptococcus mutans NV1996]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPDEKIPNNASQAQNTYILEKEV 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEEFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+I + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASILMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|335029784|ref|ZP_08523288.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantis SK1076]
gi|334268192|gb|EGL86636.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantis SK1076]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I+++TVGK + ++ + EY ++ + VE ++L P D + +I D E
Sbjct: 1 MKIKIVTVGKLKEKYLKDGIAEYSKRISRFATVEMVELADEKTPDRASDSENEKILDLEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++VV+L G + SE+ ++ + A G S ++F IGG G ++++R
Sbjct: 61 NRILSKIGDREFVVVLAIEGKTLSSEEFSKQLEQASINGFSTLTFVIGGSLGLSNEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+S+ + L HQ+ LVL EQ+YR++TI +G YH
Sbjct: 121 ANLSVSFGRLTLPHQLMRLVLTEQIYRAFTIQQGSPYH 158
>gi|389774430|ref|ZP_10192549.1| rRNA large subunit methyltransferase [Rhodanobacter spathiphylli
B39]
gi|388438029|gb|EIL94784.1| rRNA large subunit methyltransferase [Rhodanobacter spathiphylli
B39]
Length = 156
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ-IKDEDMAVMNI 137
R+I VG++ V EY +L + ++ ++L+ + G A+ I+DE A++
Sbjct: 4 RLIAVGERMPGWVAEGFAEYRKRLSHDLPLDLVELKPGTRGKGRDDARAIQDEGAAILAA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV LD G SE++A + TG ++F IGGP GH P++ +RA+
Sbjct: 64 LPHDIHVVALDGRGKTWSSEELAAQLEKWRMTGRD-LAFLIGGPDGHAPEVLQRADQRWS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + LVL EQLYR+ TI+ G YH
Sbjct: 123 LGPLTLPHMLVRLVLAEQLYRATTIMSGHPYH 154
>gi|171778192|ref|ZP_02919421.1| hypothetical protein STRINF_00260 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283016|gb|EDT48440.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I VGK + ++ + EY ++ + K E ++L P N + + ++ E
Sbjct: 1 MKVKIIAVGKLKEKYLKDGIAEYGKRMIRFAKFEIVELSDEKTPDNASEAQNHQIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D+V++L G SE+ + ++ DA G S I F IGG G K+++R
Sbjct: 61 DRILAKISERDYVIVLAIEGKQFPSEEFSRIIADATLRGYSDIVFVIGGSLGLADKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANLKMSFGLLTLPHQLMRLVLAEQIYRAFMIQQGSPYH 158
>gi|421490276|ref|ZP_15937650.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
anginosus SK1138]
gi|400373681|gb|EJP26609.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
anginosus SK1138]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L + K + ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYVKRLGRFTKFDMIELPDEKTPDKASHLENQQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V+ L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 TRILSKINDKEFVIALAIEGQQFPSEEFSKRLSDVTVRGFSDITFVIGGSLGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YRS+ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRSFMIQQGSPYH 158
>gi|217967688|ref|YP_002353194.1| hypothetical protein Dtur_1306 [Dictyoglomus turgidum DSM 6724]
gi|226734659|sp|B8E0D5.1|RLMH_DICTD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|217336787|gb|ACK42580.1| protein of unknown function DUF163 [Dictyoglomus turgidum DSM 6724]
Length = 152
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+++ VGK R+ ++ V+EY+ +L + ++ ++ + + A +K+E++ + NI
Sbjct: 3 FKILVVGKLRNEFIKAGVNEYLKRLLPFINIK-IEFLPSFSELPEKMALLKEEEIILKNI 61
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+++++++LD+NG + SE+ + + +T +I+F IGG YG +++ + +
Sbjct: 62 -KNNEFIIILDKNGEKLSSEEFSNKLFKL-TTLNPQITFVIGGIYGVSENIKKSSKFLLS 119
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H+ ALL+L+EQ+YR++ I + + YH+
Sbjct: 120 LSPMTFTHEFALLILLEQIYRAFKINRNEPYHY 152
>gi|451344861|ref|YP_007443492.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
IT-45]
gi|449848619|gb|AGF25611.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
IT-45]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKNKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGKMKTSEELADTIDKLATYGKSKITFVIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILVEQVYRAFRINRGEPYH 158
>gi|89096792|ref|ZP_01169684.1| hypothetical protein B14911_14167 [Bacillus sp. NRRL B-14911]
gi|89088807|gb|EAR67916.1| hypothetical protein B14911_14167 [Bacillus sp. NRRL B-14911]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I +ITVGK + ++ +DEY+ +L Y K++ +++ P+ D++ Q+K E
Sbjct: 3 ISIITVGKLKEKYLKQGIDEYLKRLSAYAKMDIIEVPDEKAPEELSDIEMIQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L G SE++A+ + + G S+I+F IGG G ++ +R++
Sbjct: 63 ILAKIHPDAHVIALAIEGKMKSSEELADTIDKLATYGKSKIAFVIGGSLGLSQEVLQRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 123 EKLSFSKMTFPHQLMKLVLLEQVYRSFRINRGEPYH 158
>gi|359407039|ref|ZP_09199675.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella stercorea DSM 18206]
gi|357553787|gb|EHJ35525.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Prevotella stercorea DSM 18206]
Length = 156
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 95 VDEYIGKLKYYC--KVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGL 152
+ +Y ++ +Y + + N KN + Q + E ++ +I D VV+LDE+G
Sbjct: 20 IKDYTERISHYMPFNITTIPALKNTKNLSE-DQQKQAEGEQILRLIQPSDTVVLLDEHGT 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
+ S ++ + T A R+ F IGGPYG + +R++ I LS M +HQ+ L+
Sbjct: 79 ERTSMEIGAWLQKKQQT-ARRLIFVIGGPYGFSDAVYKRSDEMISLSRMTFSHQMVRLIF 137
Query: 213 VEQLYRSWTILKGQNYHH 230
EQLYR+ TI+KG++YHH
Sbjct: 138 TEQLYRACTIIKGESYHH 155
>gi|281411526|ref|YP_003345605.1| hypothetical protein Tnap_0083 [Thermotoga naphthophila RKU-10]
gi|281372629|gb|ADA66191.1| protein of unknown function DUF163 [Thermotoga naphthophila RKU-10]
Length = 151
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R+ +GK ++ + Y LK +CK+E L+++ K + + + + ED+A
Sbjct: 1 MRVRIAVIGKLDGF-IREGIRHYEKFLKRFCKLEVLEIKRVHKGSIEEIVRKETEDLA-- 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
N I +V+++D G ++ SE+ A+ + D G I+ IGGPYG ++ +A+
Sbjct: 58 NRILLGSFVMVMDRRGEEVSSEEFADFLKDLEMKGKD-ITILIGGPYGLNEEIFAKAHRV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H + +L+++EQ++R++ I+ G+NYH+
Sbjct: 117 FSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHY 151
>gi|183602508|ref|ZP_02963873.1| hypothetical protein BIFLAC_04206 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683553|ref|YP_002469936.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis AD011]
gi|241190582|ref|YP_002967976.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241195988|ref|YP_002969543.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|384190829|ref|YP_005576577.1| transposase [Bifidobacterium animalis subsp. lactis BB-12]
gi|384191971|ref|YP_005577718.1| transposase [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|384193581|ref|YP_005579327.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis BLC1]
gi|384195138|ref|YP_005580883.1| hypothetical protein BalV_0516 [Bifidobacterium animalis subsp.
lactis V9]
gi|387820449|ref|YP_006300492.1| 50S m3Psi1915 methyltransferase RlmH [Bifidobacterium animalis
subsp. lactis B420]
gi|387822120|ref|YP_006302069.1| 50S m3Psi1915 methyltransferase RlmH [Bifidobacterium animalis
subsp. lactis Bi-07]
gi|423679107|ref|ZP_17653983.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis BS 01]
gi|254807106|sp|B8DTN1.1|RLMH_BIFA0 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|183218149|gb|EDT88795.1| hypothetical protein BIFLAC_04206 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621203|gb|ACL29360.1| conserved hypothetical protein [Bifidobacterium animalis subsp.
lactis AD011]
gi|240248974|gb|ACS45914.1| hypothetical protein Balac_0539 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250542|gb|ACS47481.1| hypothetical protein Balat_0539 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178321|gb|ADC85567.1| Transposase [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793569|gb|ADG33104.1| hypothetical protein BalV_0516 [Bifidobacterium animalis subsp.
lactis V9]
gi|340364708|gb|AEK29999.1| Transposase [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|345282440|gb|AEN76294.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis BLC1]
gi|366041609|gb|EHN18100.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. lactis BS 01]
gi|386653150|gb|AFJ16280.1| LSU m3Psi1915 methyltransferase RlmH ybeA [Bifidobacterium animalis
subsp. lactis B420]
gi|386654728|gb|AFJ17857.1| LSU m3Psi1915 methyltransferase RlmH ybeA [Bifidobacterium animalis
subsp. lactis Bi-07]
Length = 159
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-EDMA 133
I ++ VGK + ++ +DEY +L + KV+ +++ P++ D + AQIK+ E
Sbjct: 3 IDIVCVGKVKERYLRDAIDEYRKRLSRFAKVDVIEVADEKTPEHASDTLNAQIKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + +VV L G + SEQ+A + G G S + F IGG G P++ RAN
Sbjct: 63 ILKHLRDGAFVVALAIEGDQLTSEQLAARIAQWGLHGVSHLQFVIGGSLGLDPRVLRRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ ++L+EQ+YR++ I + YH
Sbjct: 123 MPLSFSKMTFPHQLMRVILLEQIYRAFKINAHEPYH 158
>gi|225572079|ref|ZP_03780943.1| hypothetical protein RUMHYD_00373 [Blautia hydrogenotrophica DSM
10507]
gi|225040413|gb|EEG50659.1| rRNA large subunit m3Psi methyltransferase RlmH [Blautia
hydrogenotrophica DSM 10507]
Length = 159
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA---QIKD-ED 131
+ I ++TVGK + ++ V EY +L YCK+E +++ G +A QI+ E
Sbjct: 1 MKITLVTVGKIKEKYLKDAVAEYSKRLNRYCKLEIVEVADEKTLDGASEAVENQIRQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ + D +V+ L +G + SE+ +E +G G +G S I F IGG G ++ +R
Sbjct: 61 ERISKYLREDAYVIALAIDGEMLSSEKFSEKIGRLGISGVSHIIFVIGGSIGLDKELLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + IL + YH
Sbjct: 121 ADCRLSFSRMTFPHQLMRVILLEQIYRGYRILSNEPYH 158
>gi|435855214|ref|YP_007316533.1| hypothetical protein Halha_2566 [Halobacteroides halobius DSM 5150]
gi|433671625|gb|AGB42440.1| hypothetical protein Halha_2566 [Halobacteroides halobius DSM 5150]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA----QIKDED 131
+ +RVI VGK + +Q ++E+I +L+ + VE + ++ + G + + Q+K+++
Sbjct: 1 MKLRVIAVGKIKENYIQQGINEFITRLERHTDVEVTEAKAE-RIKGSLSSAEMEQVKEKE 59
Query: 132 M-AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ +++ + + LD +G + S+ +A+ + + G S I F IGG G K+RE
Sbjct: 60 ADRIIKQLNNRAYTIALDPHGKPMTSKGLAKSINNLQVQGYSSIEFIIGGTLGLHSKVRE 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A+ + S M H++ L+L+EQ+YR++ I+KG+ YHH
Sbjct: 120 EADYVLTFSHMTFTHEMIRLILLEQVYRAFKIMKGEPYHH 159
>gi|157694418|ref|YP_001488880.1| rRNA large subunit methyltransferase [Bacillus pumilus SAFR-032]
gi|166990886|sp|A8FJA3.1|RLMH_BACP2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|157683176|gb|ABV64320.1| hypothetical protein BPUM_3676 [Bacillus pumilus SAFR-032]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI-KD-ED 131
+ I +ITVGK + ++ + EY +L+ Y K++ ++L P++ + +I KD E
Sbjct: 1 MNISIITVGKLKEKYLKQGIAEYTKRLQAYAKIDIIELADEKAPEHLSEQDMKIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ D V+ L G SE++A+ + + G S++ F IGG G + +R
Sbjct: 61 ERILSKINPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVCFVIGGSLGLSDAVMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 121 ANEKLSFSRMTFPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|375012036|ref|YP_004989024.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359347960|gb|AEV32379.1| hypothetical protein Oweho_1382 [Owenweeksia hongkongensis DSM
17368]
Length = 157
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ--IKDEDMA 133
+ I + GK + +Q + +EY +L Y + + + + KNT ++ + K E +
Sbjct: 1 MKIVFVQTGKTKGKEIQKLEEEYYKRLGRYVSFQKV-VVPDLKNTKTLREEEVKKQEALL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ D +++LDENG S + A + + G RI F IGGPYG + + A
Sbjct: 60 IQKEFQPGDHIILLDENGKQYPSLKFANHLQQIMNRGVRRIVFVIGGPYGFDQTIYDAAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQI + EQLYR+++IL YHH
Sbjct: 120 EKLSLSLMTFSHQIIRPIFAEQLYRAYSILNNDPYHH 156
>gi|326804024|ref|YP_004321842.1| rRNA large subunit m3Psi methyltransferase RlmH [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650549|gb|AEA00732.1| rRNA large subunit m3Psi methyltransferase RlmH [Aerococcus urinae
ACS-120-V-Col10a]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDVKAQ--IKDEDMA 133
I +++VGK + ++ + EY +++ Y K+E ++++ P N D+ Q I+ E
Sbjct: 3 ITILSVGKLKEKYLKQGIAEYQKRMQRYGKLEVIEVKDEPTPDNASDLDNQQIIEKEGQR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS +V++L G + SE++A+ + + G S I F IGG G P + +RA+
Sbjct: 63 LLAKISPQAYVIVLAIKGQALSSEELAQQIDHCLTYGKSDIVFVIGGSLGTSPAVNQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + M L HQ+ LVL EQ+YR++ I+ + YH
Sbjct: 123 LLLSFGRMTLPHQLMRLVLSEQIYRAFRIIHHEPYH 158
>gi|150402218|ref|YP_001329512.1| rRNA large subunit methyltransferase [Methanococcus maripaludis C7]
gi|166988547|sp|A6VFY5.1|RLMH_METM7 RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|150033248|gb|ABR65361.1| protein of unknown function DUF163 [Methanococcus maripaludis C7]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I +I+VGK + + ++EY ++ Y K++ +++ P+N +V+ ++ E
Sbjct: 3 ITIISVGKIKEKYLSDAINEYSKRISRYSKIDIIEVADEKTPENPSEVEKSKILEKEAER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +++ L+ G ++ SE +A+ + D +G S I+F IGG G + E ++
Sbjct: 63 ILKYLKKDSFLITLEILGKELTSESLAKKINDLSISGKSDITFIIGGSLGLSKNISEISD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 123 FKLSFSKMTFPHQLMRVILLEQVYRSFRIINGEPYH 158
>gi|15896772|ref|NP_350121.1| rRNA large subunit methyltransferase [Clostridium acetobutylicum
ATCC 824]
gi|337738743|ref|YP_004638190.1| rRNA large subunit methyltransferase [Clostridium acetobutylicum
DSM 1731]
gi|384460254|ref|YP_005672674.1| hypothetical protein CEA_G3542 [Clostridium acetobutylicum EA 2018]
gi|32171892|sp|Q97DE2.1|RLMH_CLOAB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|15026630|gb|AAK81461.1|AE007850_2 Uncharacterized conserved protein, YbeA family [Clostridium
acetobutylicum ATCC 824]
gi|325510943|gb|ADZ22579.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291784|gb|AEI32918.1| rRNA large subunit methyltransferase [Clostridium acetobutylicum
DSM 1731]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTG--DVKAQIKDED 131
+ I +ITVGK + ++ V+EY +L+ YCK+ +LQ P+ + K + E
Sbjct: 1 MNITLITVGKLKEKYLKDAVNEYAKRLQKYCKLNIIELQDEKTPEKASLKEEKLIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + +VV +D G SE+ + + D G G S I F IGG G + R
Sbjct: 61 EKILSSIKDNSYVVSMDLKGKMFSSEEFSAFIDDLGVRGNSSIDFVIGGSLGLSDAVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I +G+ YH
Sbjct: 121 ANYKLCFSKMTFPHQLFRVMLLEQVYRAFRISRGEPYH 158
>gi|229099886|ref|ZP_04230809.1| hypothetical protein bcere0020_51040 [Bacillus cereus Rock3-29]
gi|229106046|ref|ZP_04236665.1| hypothetical protein bcere0019_51700 [Bacillus cereus Rock3-28]
gi|229118949|ref|ZP_04248294.1| hypothetical protein bcere0017_52120 [Bacillus cereus Rock1-3]
gi|407707927|ref|YP_006831512.1| 30S ribosomal protein S5 [Bacillus thuringiensis MC28]
gi|228664474|gb|EEL19970.1| hypothetical protein bcere0017_52120 [Bacillus cereus Rock1-3]
gi|228677365|gb|EEL31623.1| hypothetical protein bcere0019_51700 [Bacillus cereus Rock3-28]
gi|228683501|gb|EEL37456.1| hypothetical protein bcere0020_51040 [Bacillus cereus Rock3-29]
gi|407385612|gb|AFU16113.1| putative cytosolic protein [Bacillus thuringiensis MC28]
Length = 167
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMAVMNIISSDDWVVMLDEN 150
+ EY+ +L Y KVE ++L P+N + + I + E + +++ IS D V+ L
Sbjct: 28 IAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIE 87
Query: 151 GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210
G SE+ A + + G S+++F IGG G ++ +R+N S+ S M L HQ+ L
Sbjct: 88 GKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRL 147
Query: 211 VLVEQLYRSWTILKGQNYH 229
VL+EQ+YR++ I +G+ YH
Sbjct: 148 VLLEQVYRAFRINRGEPYH 166
>gi|229176135|ref|ZP_04303628.1| hypothetical protein bcere0006_52020 [Bacillus cereus MM3]
gi|228607370|gb|EEK64699.1| hypothetical protein bcere0006_52020 [Bacillus cereus MM3]
Length = 167
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMAVMNIISSDDWVVMLDEN 150
+ EY+ +L Y KVE ++L P+N + + I + E + +++ IS D V+ L
Sbjct: 28 IAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIE 87
Query: 151 GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210
G SE+ A + + G S+++F IGG G ++ +R+N S+ S M L HQ+ L
Sbjct: 88 GKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRL 147
Query: 211 VLVEQLYRSWTILKGQNYH 229
VL+EQ+YR++ I +G+ YH
Sbjct: 148 VLLEQVYRAFRINRGEPYH 166
>gi|134045599|ref|YP_001097085.1| rRNA large subunit methyltransferase [Methanococcus maripaludis C5]
gi|167013040|sp|A4FXE1.1|RLMH_METM5 RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|132663224|gb|ABO34870.1| protein of unknown function DUF163 [Methanococcus maripaludis C5]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I +I+VGK + + ++EY ++ Y K++ +++ P++ DV+ ++ E
Sbjct: 1 MNITIISVGKIKEKYLSDAINEYSKRISRYSKLDIIEVADEKTPESPSDVEKSKILEKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D +V+ L+ G ++ SE +A+ + D +G S I+F IGG G + E
Sbjct: 61 ERILKHLKKDSFVITLEILGKEVTSESLAKKINDLSISGKSDITFIIGGSLGLSKNISEI 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 SDFKLSFSKMTFPHQLMRVILLEQIYRSFRIINGEPYH 158
>gi|385651776|ref|ZP_10046329.1| hypothetical protein LchrJ3_05336 [Leucobacter chromiiresistens JG
31]
Length = 152
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGKK V + Y +L+ K D + P ++ + +A +E ++
Sbjct: 1 MSVRVLAVGKKHESWVSEGIGRYEKRLR---KPFDTAWQLLPHSSREGEAARAEESDRLL 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ D +VV+LDE G + S ++A + A G S ++ IGG YG ++R RA+
Sbjct: 58 AKLDRDAFVVLLDERGRGVDSPELARTLQRAFDGGRS-VTVIIGGAYGVDDRVRARADFV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS +V HQ+ LVLVEQLYRS I ++YHH
Sbjct: 117 WSLSRLVFPHQLVRLVLVEQLYRSQEISANRSYHH 151
>gi|450061442|ref|ZP_21843818.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML5]
gi|449207217|gb|EMC07896.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML5]
Length = 159
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYRKRLKRFTKFELEELPDEKIPNNASQAQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEKFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+I + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASILMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|449887701|ref|ZP_21786980.1| rRNA large subunit methyltransferase [Streptococcus mutans SA41]
gi|449917230|ref|ZP_21797185.1| rRNA large subunit methyltransferase [Streptococcus mutans 15JP3]
gi|449928547|ref|ZP_21801253.1| rRNA large subunit methyltransferase [Streptococcus mutans 3SN1]
gi|449937259|ref|ZP_21804473.1| rRNA large subunit methyltransferase [Streptococcus mutans 2ST1]
gi|449951661|ref|ZP_21808763.1| rRNA large subunit methyltransferase [Streptococcus mutans 11SSST2]
gi|450042890|ref|ZP_21837671.1| rRNA large subunit methyltransferase [Streptococcus mutans T4]
gi|450068116|ref|ZP_21846992.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML9]
gi|450072972|ref|ZP_21848855.1| rRNA large subunit methyltransferase [Streptococcus mutans M2A]
gi|450076103|ref|ZP_21849684.1| rRNA large subunit methyltransferase [Streptococcus mutans N3209]
gi|450154679|ref|ZP_21877890.1| rRNA large subunit methyltransferase [Streptococcus mutans 21]
gi|449154436|gb|EMB58023.1| rRNA large subunit methyltransferase [Streptococcus mutans 15JP3]
gi|449164520|gb|EMB67573.1| rRNA large subunit methyltransferase [Streptococcus mutans 2ST1]
gi|449165105|gb|EMB68129.1| rRNA large subunit methyltransferase [Streptococcus mutans 3SN1]
gi|449165961|gb|EMB68924.1| rRNA large subunit methyltransferase [Streptococcus mutans 11SSST2]
gi|449197098|gb|EMB98310.1| rRNA large subunit methyltransferase [Streptococcus mutans T4]
gi|449207501|gb|EMC08175.1| rRNA large subunit methyltransferase [Streptococcus mutans NLML9]
gi|449210544|gb|EMC10997.1| rRNA large subunit methyltransferase [Streptococcus mutans M2A]
gi|449213183|gb|EMC13525.1| rRNA large subunit methyltransferase [Streptococcus mutans N3209]
gi|449237652|gb|EMC36472.1| rRNA large subunit methyltransferase [Streptococcus mutans 21]
gi|449252260|gb|EMC50244.1| rRNA large subunit methyltransferase [Streptococcus mutans SA41]
Length = 159
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPDEKIPNNASQSQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEKFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+I + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASILMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|352081045|ref|ZP_08951923.1| protein of unknown function DUF163 [Rhodanobacter sp. 2APBS1]
gi|351683086|gb|EHA66170.1| protein of unknown function DUF163 [Rhodanobacter sp. 2APBS1]
Length = 156
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKDEDMAVMNI 137
R+I VG++ V EY +L + +E ++L+ + G D I+DE A++
Sbjct: 4 RLIAVGERMPGWVAEGFAEYRKRLSHELPLELVELKPGNRGKGRDDARAIQDEGAAILAA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASR-ISFCIGGPYGHGPKMRERANISI 196
+ D VV LD G SE++A + AG A R ++F IGGP GH P++ RA+
Sbjct: 64 LPHDIHVVALDGRGKSWSSEELAAQL--AGWRMAGRDLAFLIGGPDGHAPEVLARADQRW 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + L+L EQLYR+ TI+ G YH
Sbjct: 122 SLGPLTLPHMLVRLLLAEQLYRATTIVAGHPYH 154
>gi|255280954|ref|ZP_05345509.1| alpha/beta knot family protein [Bryantella formatexigens DSM 14469]
gi|255268402|gb|EET61607.1| rRNA large subunit m3Psi methyltransferase RlmH [Marvinbryantia
formatexigens DSM 14469]
Length = 159
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA---QIKD-ED 131
+ I VI VGK + + EY +L YCK+E ++L G A QIK+ E
Sbjct: 1 MRITVIAVGKIKEKYFTGAIAEYAKRLSRYCKLEIIELADEKTPEGASAALELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D +V+ L G + SE +A+ + G G S ++F IGG G ++ R
Sbjct: 61 DRILKALREDAYVIALAIEGKKLTSEGLADFIEKRGIAGDSHLAFIIGGSLGLDARVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 121 ADCLLSFSDMTFPHQLMRVILLEQIYRSFRIIHHEPYH 158
>gi|319935113|ref|ZP_08009553.1| ribosomal RNA large subunit methyltransferase H 1 [Coprobacillus
sp. 29_1]
gi|319809938|gb|EFW06321.1| ribosomal RNA large subunit methyltransferase H 1 [Coprobacillus
sp. 29_1]
Length = 159
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-------RSNPKNTGDVKAQIK 128
+ I+ ITVGK + ++ + EY ++ Y +E +++ +++ VKA+
Sbjct: 1 MRIKFITVGKLKEKYLKDGIKEYAKRISAYADIEMIEVMDERIPDKASLAEEMLVKAK-- 58
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
E +++ + DD++++LD +G ++ S ++ + G S I F IGG GHG ++
Sbjct: 59 -EGRKILDKVKQDDYMILLDVSGKEMDSVAFSKHIEKCMIDGKSTIVFVIGGSLGHGEEI 117
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA + + S M HQ+ L+L+EQ+YR++ I+K + YH
Sbjct: 118 LSRAQLRLSFSPMTFPHQLMRLILIEQVYRAFKIMKNETYH 158
>gi|159906004|ref|YP_001549666.1| rRNA large subunit methyltransferase [Methanococcus maripaludis C6]
gi|238686993|sp|A9AAR1.1|RLMH_METM6 RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|159887497|gb|ABX02434.1| protein of unknown function DUF163 [Methanococcus maripaludis C6]
Length = 159
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
I +I+VGK + + + EY ++ Y K++ +++ P+N DV+ ++ E
Sbjct: 3 ITIISVGKIKEKYLSGAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKLLEKEAER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +V+ L+ G ++ SE +A+ + D +G S I+F IGG G + E ++
Sbjct: 63 ILKYLKKDSFVITLEILGKELTSESLAKKINDLSISGKSDITFIIGGSLGLSRNISEISD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 123 FKLSFSKMTFPHQLMRVILLEQIYRSFRIINGEPYH 158
>gi|255535680|ref|YP_003096051.1| SpoT methyltransferase superfamily protein [Flavobacteriaceae
bacterium 3519-10]
gi|255341876|gb|ACU07989.1| SpoT methyltransferase superfamily protein [Flavobacteriaceae
bacterium 3519-10]
Length = 157
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ I ++ +GK + +V Y +L + E ++ ++ KN ++ ++ K+E
Sbjct: 1 MRINLVCIGKTDDKEISNLVKYYQNRLPKHWNFEITEI-ADVKNAKNLTPELLKKEEAKL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + D+VV+LDENG S A + ++ ++SF IGG YG ++ RAN
Sbjct: 60 FLAQTENSDFVVLLDENGTQFSSRGFATKIEGWMNSSVKKVSFFIGGAYGFSEEIYSRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M HQ+ L VEQLYR+ IL+G+ YH+
Sbjct: 120 TKMSLSKMTFTHQMIRLFFVEQLYRADQILQGKPYHN 156
>gi|375088073|ref|ZP_09734415.1| rRNA large subunit m3Psi methyltransferase RlmH [Dolosigranulum
pigrum ATCC 51524]
gi|374562903|gb|EHR34226.1| rRNA large subunit m3Psi methyltransferase RlmH [Dolosigranulum
pigrum ATCC 51524]
Length = 159
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN---TGDVKAQIKD-ED 131
+ I +I+VGK + + ++EY +L YC +++ P + + ++K+ E
Sbjct: 1 MKITIISVGKLKEKYLIKGINEYAKRLGAYCTFNIIEVDDEPAPEHLSAANEQKVKEIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+S D+V LD G + SE A + D G S I+F IGG G P + +R
Sbjct: 61 ERILERIASRDYVFALDLQGQQLTSEAFAADIEDKMIYGQSHITFIIGGSLGLSPAVIQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + I M HQ+ L+L EQ+YR++ I++G+ YH
Sbjct: 121 SQMQIAFGKMTYPHQLMRLILTEQIYRAFRIIRGEPYH 158
>gi|81427697|ref|YP_394695.1| rRNA large subunit methyltransferase [Lactobacillus sakei subsp.
sakei 23K]
gi|118574452|sp|Q38ZJ4.1|RLMH_LACSS RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|78609337|emb|CAI54383.1| Hypothetical protein LCA_0084 [Lactobacillus sakei subsp. sakei
23K]
Length = 159
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKD-ED 131
+ I++ITVGK + ++ + EY +L +CK E +++ P++ + + +KD E
Sbjct: 1 MNIKIITVGKLKEKYLKAGIAEYAKRLSKFCKFEIIEVSDEKAPESLSEAEMTTVKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + V++L +G SE+ A+ + D + G S I+F IGG G + +R
Sbjct: 61 ERILAKVKDKEHVIVLAIHGKQRASEEFAKEIQDLATYGTSDITFIIGGSLGTSDAVNKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN ++ + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANDALSFGKLTLPHQLMRLVLTEQIYRAFMINQGSPYH 158
>gi|118587245|ref|ZP_01544673.1| hypothetical protein OENOO_62076 [Oenococcus oeni ATCC BAA-1163]
gi|421187073|ref|ZP_15644452.1| hypothetical protein AWRIB418_1685 [Oenococcus oeni AWRIB418]
gi|118432387|gb|EAV39125.1| hypothetical protein OENOO_62076 [Oenococcus oeni ATCC BAA-1163]
gi|399964364|gb|EJN99006.1| hypothetical protein AWRIB418_1685 [Oenococcus oeni AWRIB418]
Length = 160
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDED 131
L IR++ VGK + + +DEY+ +L + K+E ++++ K++ ++ E
Sbjct: 2 LNIRILVVGKIKEKYFRNALDEYLKRLSRFTKIEIIEVKDEATPEKASKSENLEILQTEG 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I++ D+V+ L G I S +A+++ + G S I F IGG G +++ R
Sbjct: 62 GRLLDKINNRDFVIALAIEGKLITSPDLADMIREIPLDGYSTIDFVIGGSLGLSNEIKNR 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN I + L HQ+A ++L EQ+YRS+ I +G YH
Sbjct: 122 ANAKISFGRITLPHQLARVLLTEQIYRSFMINEGSPYH 159
>gi|336426905|ref|ZP_08606913.1| hypothetical protein HMPREF0994_02919 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010545|gb|EGN40528.1| hypothetical protein HMPREF0994_02919 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 192
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDV-KAQIKDEDM 132
+ I VI VGK + + + EY +L YCK+E L++ P DV K QI ++
Sbjct: 34 MKISVICVGKVKENFYREAIAEYAKRLSRYCKLEILEVEDEKTPDRPSDVMKDQILKKEG 93
Query: 133 AVMN-IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
MN I D + + L G + SE+ A +G G G S I F IGG G P + ++
Sbjct: 94 ERMNRYIRDDAYKIALAIEGKKMDSERFASKIGGLGVKGVSHIQFLIGGSLGLHPSVLQK 153
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + S M HQ+ ++L+EQ+YR + I G+ YH
Sbjct: 154 SDEKLSFSDMTFPHQLMRVILLEQVYRGFRINAGEPYH 191
>gi|171741054|ref|ZP_02916861.1| hypothetical protein BIFDEN_00120 [Bifidobacterium dentium ATCC
27678]
gi|306823398|ref|ZP_07456773.1| alpha/beta knot family protein [Bifidobacterium dentium ATCC 27679]
gi|171276668|gb|EDT44329.1| rRNA large subunit m3Psi methyltransferase RlmH [Bifidobacterium
dentium ATCC 27678]
gi|304553105|gb|EFM41017.1| alpha/beta knot family protein [Bifidobacterium dentium ATCC 27679]
Length = 159
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIK-DED 131
+ I +ITVGK + ++ + EY +L YCK++ +++ P++ G+ ++ QIK E
Sbjct: 1 MKITLITVGKVKEKYLRDAIAEYSKRLGRYCKLDIVEVADEKTPEHAGEGLERQIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D +V+ L G + SE++A + G G S I IGG G P + +R
Sbjct: 61 ERIARYIRDDAFVIALAIEGKQLTSEELAAKIDGLGLHGTSHIQLIIGGSLGLDPSILQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ADYLLSFSRMTFPHQLMRVILLEQIYRAYKINAGEPYH 158
>gi|300021745|ref|YP_003754356.1| hypothetical protein Hden_0210 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523566|gb|ADJ22035.1| protein of unknown function DUF163 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 160
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 8/159 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCK------VEDLQLRSNPKNTGDVKAQIKDED 131
I ++ VGK + + + D Y + + ++ +L + + + D + Q DE
Sbjct: 3 ISLLAVGKLKDAEERAISDRYAKRFNGAGRSIGLGPIDIRELNESRQASADERKQ--DEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +++D ++V LD G + SE A +G+ +F IGGP GHG ++ +
Sbjct: 61 ARLLKDLAADTFIVALDPAGKSVSSEAFARTLGEKRDGAVKTCAFLIGGPDGHGAQVLKS 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A +++ L ++ L H +A +VL+EQLYR+ TIL G YH
Sbjct: 121 AGMTLSLGALTLPHGLARVVLLEQLYRAATILSGHPYHR 159
>gi|297171677|gb|ADI22671.1| uncharacterized conserved protein [uncultured Gemmatimonadales
bacterium HF0500_22O06]
Length = 156
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT-GDVKAQIKDEDMAV 134
+ ++++ VGK + Q V EY + Y K+ ++ S + T + + +K E +
Sbjct: 1 MKVQILAVGKVKGPLAQ-SVAEYEKRAARYWKLGIEEVSSGARGTSANPQLVLKTESTRL 59
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ IS + VV L +G + S + A+ + T ++ ++F IGG YG G + RA
Sbjct: 60 LARISKELEVVALTRSGRTMDSREFAKYLEHRALTASAGVAFIIGGAYGLGEGVLARAQK 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M L HQIA LVL EQLYR+ TIL+G+ YH
Sbjct: 120 KLSLSPMTLPHQIARLVLSEQLYRAGTILRGEPYH 154
>gi|427405708|ref|ZP_18895913.1| rRNA large subunit m3Psi methyltransferase RlmH [Selenomonas sp.
F0473]
gi|425708549|gb|EKU71588.1| rRNA large subunit m3Psi methyltransferase RlmH [Selenomonas sp.
F0473]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYC-----KVEDLQLRSNPKNTGDVKAQIKDEDM 132
I V+ GK + ++ + EY +L+ Y ++ + +++ P + + + ++ E M
Sbjct: 3 ITVLCAGKLKEQYLRDGIAEYTKRLRTYADVYMIEIPEERMKDAP-SAAEKRETLRREGM 61
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ I ++++LD G ++ SE++AE +G G S I F IGGP+G ++R+ A
Sbjct: 62 RLRAQIPKGAYLIVLDVIGTELSSEELAERVGRLCLAGKSHIVFLIGGPFGLSDEVRQAA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + S HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 122 DLRLSFSHFTFPHQLVRLMLMEQVYRAFKINRGEPYH 158
>gi|427440106|ref|ZP_18924620.1| alpha/beta knot family protein [Pediococcus lolii NGRI 0510Q]
gi|425787668|dbj|GAC45408.1| alpha/beta knot family protein [Pediococcus lolii NGRI 0510Q]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I++I VGK + ++ + EY +L +CK + +++ P++ D + ++ + E
Sbjct: 1 MNIKIIGVGKLKEKYLKQGIAEYAKRLSKFCKFQIIEVPDEKAPESLSDAQMEMVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I ++V L+ NG + SE++AE + + G S I+F IGG G + +R
Sbjct: 61 ERILAKIKDREYVFTLEINGKERSSEELAEEIAKLTTYGHSDITFVIGGSLGLSSAVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ +I L HQ+ LVL EQ+YR++ I G YH
Sbjct: 121 ADTAISFGRFTLPHQLMRLVLTEQIYRAFMIQSGSPYH 158
>gi|386866737|ref|YP_006279731.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. animalis ATCC 25527]
gi|385700820|gb|AFI62768.1| rRNA large subunit methyltransferase [Bifidobacterium animalis
subsp. animalis ATCC 25527]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I ++ VGK + ++ +DEY +L + KV+ +++ P++ D + AQIK+ E
Sbjct: 1 MNIDIVCVGKVKERYLRDAIDEYRKRLSRFAKVDVIEVADEKTPEHASDTLNAQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + +VV L G + SEQ+A + G G S + F IGG G P++ R
Sbjct: 61 ERILKHLRDGAFVVALAIEGDQLTSEQLAARIAQWGLHGVSHLQFVIGGSLGLDPRVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + S M HQ+ ++L+EQ+YR++ I + YH
Sbjct: 121 ANMLLSFSKMTFPHQLMRVILLEQIYRAFKINAHEPYH 158
>gi|344201370|ref|YP_004786513.1| ribosomal RNA large subunit methyltransferase H [Muricauda
ruestringensis DSM 13258]
gi|343953292|gb|AEM69091.1| Ribosomal RNA large subunit methyltransferase H [Muricauda
ruestringensis DSM 13258]
Length = 157
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 86/160 (53%), Gaps = 9/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDE 130
+ I +I +GK ++ ++ Y +LK+Y K + D++ N KN + + + K+
Sbjct: 1 MQITLIAIGKTDKSELEELIAVYEKRLKHYIKFQIDIIPDIK---NRKNLSEAQQKEKEG 57
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ ++ + D +++LDE G S A+ + ++G + IGGPYG +
Sbjct: 58 EL-ILAQLQPTDTLILLDEKGKQYSSLDFAQFLQKKMNSGIKNLVLAIGGPYGFSNTVYA 116
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+++ I LS M +HQ+ L +VEQ+YR +TIL+ + YHH
Sbjct: 117 KSSGKISLSKMTFSHQMVRLFIVEQIYRGFTILRNEPYHH 156
>gi|450125883|ref|ZP_21867873.1| rRNA large subunit methyltransferase [Streptococcus mutans U2A]
gi|449232008|gb|EMC31151.1| rRNA large subunit methyltransferase [Streptococcus mutans U2A]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPDEKIPNNASQAQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEKFSQLLSATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASMLMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|403236768|ref|ZP_10915354.1| hypothetical protein B1040_13444 [Bacillus sp. 10403023]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKD-ED 131
+ I ++T+GK + + ++EY+ +L Y KVE ++L P+N + + Q+K E
Sbjct: 1 MNITIVTIGKLKEKYLIQGINEYLKRLTAYAKVEIVELADEKAPENLSESEMEQVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +S D V+ L G SEQ+A + + G S+I+F IGG G + +R
Sbjct: 61 ERILAKLSDDTHVIALAIEGKMKSSEQLAADIEKLATYGKSKIAFVIGGSLGLSKDVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN ++ S M HQ+ L+LVEQ+YR++ I + + YH
Sbjct: 121 ANDTLSFSKMTFPHQLMRLILVEQIYRAFRINRNEPYH 158
>gi|392429591|ref|YP_006470605.1| hypothetical protein SCIM_1705 [Streptococcus intermedius JTH08]
gi|419775868|ref|ZP_14301794.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
intermedius SK54]
gi|383846488|gb|EID83884.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
intermedius SK54]
gi|391758740|dbj|BAM24357.1| conserved hypothetical protein [Streptococcus intermedius JTH08]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDM 132
+ I+++TVGK + ++ + EY +L + K + ++L P ++ QI D++
Sbjct: 1 MKIKLVTVGKLKEKYLKDGISEYTKRLNRFTKFDIIELPDEKTPDKASHLENQQILDKEG 60
Query: 133 A-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
A +++ ++ ++V++L G SE+ ++++ D G S I+F IGG G +++R
Sbjct: 61 ARILSKLADKEFVIVLAIEGQQFPSEKFSKILSDITIRGISDITFVIGGSLGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|313889499|ref|ZP_07823145.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852418|ref|ZP_11909563.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudoporcinus LQ 940-04]
gi|313122111|gb|EFR45204.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739907|gb|EHI65139.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
pseudoporcinus LQ 940-04]
Length = 162
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I+VGK + ++ + EY +L +C+ E ++L P N + + E
Sbjct: 4 MKVKIISVGKLKEKYLKDGIIEYQKRLSRFCQFEIIELIDEKTPDNASQAENTKILAKEA 63
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I S D+++ L G SE+ ++ M + G S I+F IGG G +++R
Sbjct: 64 ERIQKKIDSRDFIIALAIEGKQFPSEKFSQQMTNITVQGYSNITFIIGGSLGLDASLKKR 123
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
ANI + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 124 ANILMSFGLLTLPHQLMRLVLIEQIYRAFMIQEGSPYH 161
>gi|153816448|ref|ZP_01969116.1| hypothetical protein RUMTOR_02701 [Ruminococcus torques ATCC 27756]
gi|317500200|ref|ZP_07958432.1| alpha/beta knot family protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087572|ref|ZP_08336502.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336437993|ref|ZP_08617636.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145846236|gb|EDK23154.1| rRNA large subunit m3Psi methyltransferase RlmH [Ruminococcus
torques ATCC 27756]
gi|316898415|gb|EFV20454.1| alpha/beta knot family protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|330400443|gb|EGG80076.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336018368|gb|EGN48116.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK---VEDLQLRSNPKNTGDVKAQIK-DED 131
+ I +ITVGK + ++ + EY +L YCK VE ++ + + V+ I+ E
Sbjct: 1 MKITLITVGKIKEKYLKDAIAEYSKRLSKYCKLTIVEVADEKTPDQASETVEEAIRTKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +I D +V+ L+ G + SE+++ + G G S I+F IGG G G + R
Sbjct: 61 ERILKVIKDDMYVITLEIGGAMLSSEELSAKIEKLGIQGKSSIAFIIGGSIGLGKTVLAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 121 SDYALSFSKMTFPHQLMRVILLEQIYRSYRIINAEPYH 158
>gi|340351145|ref|ZP_08674113.1| alpha/beta knot family protein [Prevotella nigrescens ATCC 33563]
gi|339606763|gb|EGQ11730.1| alpha/beta knot family protein [Prevotella nigrescens ATCC 33563]
Length = 156
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMAVMNI 137
+I VGK + +Y G++ +Y + + N K + + + ++ ++ ++
Sbjct: 5 LILVGKTTEEVFVRAIADYAGRIAHYLPFNIVTIPELKNTKKLSEAQQKAREGEL-ILRE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S A + +T A R+ F IGG YG + RA+ I
Sbjct: 64 IQPSDTVVLLDEHGKEFRSVDYAAWLQKKQNT-ARRLVFVIGGAYGFSEAVYSRADEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ +I++G+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFVEQLYRACSIIRGEPYHH 155
>gi|16802339|ref|NP_463824.1| rRNA large subunit methyltransferase [Listeria monocytogenes EGD-e]
gi|32171879|sp|Q8YA66.1|RLMH_LISMO RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|16409658|emb|CAD00820.1| lmo0293 [Listeria monocytogenes EGD-e]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D +V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|384267524|ref|YP_005423231.1| hypothetical protein BANAU_3895 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387900666|ref|YP_006330962.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
Y2]
gi|380500877|emb|CCG51915.1| UPF0247 protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387174776|gb|AFJ64237.1| rRNA large subunit methyltransferase [Bacillus amyloliquefaciens
Y2]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D V+ L G SE++A+ + + G S+I+F IGG G + +RA+
Sbjct: 63 ILAKISPDTHVIALAIEGKMKTSEELADTIDKLATYGKSKITFIIGGSLGLSDAVMKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMRLILMEQVYRAFRINRGEPYH 158
>gi|320527767|ref|ZP_08028936.1| conserved hypothetical protein TIGR00246 [Solobacterium moorei
F0204]
gi|320131847|gb|EFW24408.1| conserved hypothetical protein TIGR00246 [Solobacterium moorei
F0204]
Length = 158
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPK-NTGDVKAQIKD-EDMA 133
I++I GK + ++ V EY+ +++ Y K+E ++Q P+ N+ Q+K E
Sbjct: 2 IKIIACGKLKEKWMKDGVAEYVKRIRPYDKLEVIEVQDEKAPETNSAAENEQVKVVEGQR 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D++V++LD G+DI S +A + D + S+I+F IGG G ++ +RA+
Sbjct: 62 ILKNIRDDEYVILLDLAGMDIDSIALANKIQDCYNHARSKITFVIGGSLGLSNELIQRAD 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++S HQ+ +++VEQ+YRS+ IL + YH
Sbjct: 122 FRWRISKATFPHQLCRILVVEQIYRSFRILHNEPYH 157
>gi|260558468|ref|ZP_05830664.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|392988525|ref|YP_006487118.1| hypothetical protein EHR_06440 [Enterococcus hirae ATCC 9790]
gi|430821028|ref|ZP_19439643.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E0045]
gi|430826251|ref|ZP_19444439.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E0164]
gi|430828956|ref|ZP_19447065.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E0269]
gi|430893002|ref|ZP_19484623.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1575]
gi|431206907|ref|ZP_19500807.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1620]
gi|431747056|ref|ZP_19535860.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E2134]
gi|431765083|ref|ZP_19553605.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E4215]
gi|260075642|gb|EEW63948.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|392335945|gb|AFM70227.1| hypothetical protein EHR_06440 [Enterococcus hirae ATCC 9790]
gi|430438888|gb|ELA49286.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E0045]
gi|430445244|gb|ELA55011.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E0164]
gi|430482272|gb|ELA59392.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E0269]
gi|430555468|gb|ELA95006.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1575]
gi|430571092|gb|ELB10021.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1620]
gi|430607260|gb|ELB44582.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E2134]
gi|430629290|gb|ELB65695.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E4215]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I++I+VGK + + ++EY+ +L+ Y K+E +++ P+N + + Q+K+ E
Sbjct: 3 IKIISVGKLKEKYLIQGINEYVKRLQAYAKIERIEVPDEKAPENLSEAQMRQVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I ++V L G + SE A+ + G G S+I+F IGG G + +R+N
Sbjct: 63 ILSKIKEQEYVYALAIEGKNPTSEAFAKEIDQLGIQGKSQITFVIGGSLGLSEAVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I M HQ+ L+LVEQ+YR++ I G YH
Sbjct: 123 AQISFGKMTYPHQLMRLILVEQIYRAFRINAGAPYH 158
>gi|258509792|ref|YP_003172543.1| rRNA large subunit methyltransferase [Lactobacillus rhamnosus GG]
gi|385829411|ref|YP_005867183.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|257149719|emb|CAR88692.1| Conserved protein [Lactobacillus rhamnosus GG]
gi|259651056|dbj|BAI43218.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-----TGDVKAQIKDE 130
I++I VGK + + + EY+ ++ + KV+ +++ P+N DVKA+ E
Sbjct: 3 IKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKAK---E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +
Sbjct: 60 GERILHKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFVIGGSLGLAPAVMK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 158
>gi|357051925|ref|ZP_09113043.1| ribosomal RNA large subunit methyltransferase H [Clostridium
clostridioforme 2_1_49FAA]
gi|355387193|gb|EHG34219.1| ribosomal RNA large subunit methyltransferase H [Clostridium
clostridioforme 2_1_49FAA]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKD-ED 131
+ I ++TVGK + + + EY +L YCK++ +Q+ P G+ + QIK+ E
Sbjct: 1 MKITLVTVGKIKEPYFEDAIREYAKRLSRYCKLDIIQVADEKTPDGAGEAIVRQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +V+ L G + SE++A + G G I F IGG G + +R
Sbjct: 61 QRILSNIKDGAYVIALAIEGKMLTSEELAGRIQRLGVDGVGHIVFVIGGSLGLSGDVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ ++ S M HQ+ +VL+EQ+YRS+ I+ G+ YH
Sbjct: 121 ADYALSFSKMTFPHQLMRVVLLEQIYRSYRIISGEPYH 158
>gi|312868813|ref|ZP_07729002.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus oris
PB013-T2-3]
gi|311095656|gb|EFQ53911.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus oris
PB013-T2-3]
Length = 166
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
L I+VI VGK + + + EY +L +CK E +++ +A++ DE MA
Sbjct: 8 LNIKVIGVGKLKEKYFKAGIAEYAKRLGRFCKFEIVEVPDEKAPESLSQAEM-DEVMAKE 66
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +
Sbjct: 67 GERILSKIKDREYVFALAIKGKERTSEEFAKEINQLTTYGHSDITFVIGGSLGLSPAVLK 126
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 127 RADTQISFGRFTLPHQLMRLVLTEQIYRAFTIINGLPYH 165
>gi|39654329|pdb|1O6D|A Chain A, Crystal Structure Of A Hypothetical Protein
Length = 163
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAV 134
+L +R+ +GK ++ + Y L+ +CK E L+++ + G ++ ++ E +
Sbjct: 2 SLRVRIAVIGKLDGF-IKEGIKHYEKFLRRFCKPEVLEIKRVHR--GSIEEIVRKETEDL 58
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
N I +V+++D+ G ++ SE+ A+ + D G I+ IGGPYG ++ +A+
Sbjct: 59 TNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKD-ITILIGGPYGLNEEIFAKAHR 117
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H + +L+++EQ++R++ I+ G+NYH+
Sbjct: 118 VFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHY 153
>gi|417787869|ref|ZP_12435552.1| methyltransferase RlmH [Lactobacillus salivarius NIAS840]
gi|334308046|gb|EGL99032.1| methyltransferase RlmH [Lactobacillus salivarius NIAS840]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-------RSNPKNTGDVKAQIKDE 130
I++I VGK + ++ + EY +L +CK + +++ + +P VK + E
Sbjct: 3 IKIIGVGKLKEKYLKQGIAEYAKRLGTFCKFQIVEVPDEKAPEKLSPAEMEGVKEK---E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I ++V L G + SE+ A+ + D G+ G S I+F IGG G P++ +
Sbjct: 60 GERILAKIKDKEYVYALAIEGKERSSEEFAKELADLGTYGTSDITFVIGGSLGLSPEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN I L HQ+ +VL EQ+YR + I G+ YH
Sbjct: 120 RANTKISFGRFTLPHQLMRMVLTEQIYRGFMINAGRPYH 158
>gi|389806344|ref|ZP_10203475.1| rRNA large subunit methyltransferase [Rhodanobacter thiooxydans
LCS2]
gi|388445564|gb|EIM01628.1| rRNA large subunit methyltransferase [Rhodanobacter thiooxydans
LCS2]
Length = 156
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKDEDMAVMNI 137
R+I VG++ V EY +L + +E ++L+ + G D I+DE A++
Sbjct: 4 RLIAVGERMPGWVAEGFAEYRKRLSHELPLELIELKPGNRGKGRDDARAIQDEGTAILAA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV LD G SE++A + G ++F IGGP GH P++ RA
Sbjct: 64 LPHDIHVVALDGRGKPWSSEELAAQLAKWRMAGRD-LAFLIGGPDGHAPEVLARAEQRWS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + LVL EQLYR+ TI G YH
Sbjct: 123 LGPLTLPHMLVRLVLAEQLYRATTIASGHPYH 154
>gi|32171936|sp|Q9ZH20.1|RLMH_DESTE RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|4028018|gb|AAC96105.1| unknown [Desulfotomaculum thermocisternum]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR--SNPKN--TGDVKAQIKDEDMA 133
I ++ VGK + + L EY+ +L Y ++E +++R S P + G ++A +K E
Sbjct: 3 ITLLCVGKLKEDFLLLAQKEYLKRLSPYARIELVEVREESLPASGRAGALEAVLKKEGTR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + + LD G+ + S++ A + + G G +++ F IGG G + RA+
Sbjct: 63 LLERIPDNCVTIALDRKGMMLSSKEFAGYLAELGLRGQNKLCFIIGGSAGLAGDVLARAS 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 123 LRLSFSKFTFPHQLMRIILLEQIYRAFKIIRGEKYH 158
>gi|212640650|ref|YP_002317170.1| hypothetical protein Aflv_2832 [Anoxybacillus flavithermus WK1]
gi|212562130|gb|ACJ35185.1| Uncharacterized conserved protein [Anoxybacillus flavithermus WK1]
Length = 187
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMA 133
I +I VGK + ++ ++EY +L Y K++ +++ P+ + + ++ K E
Sbjct: 31 IYIIAVGKLKEKYLKQGIEEYTKRLSSYAKIDIIEVADEKAPEQLSEQQMELVKKKEGER 90
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D V+ L +G + SEQ A+ + + G S+I+F IGG G + +RAN
Sbjct: 91 ILAKVTDDMHVIALAIDGKMMSSEQFAQTLDRLATYGKSKIAFIIGGSLGLSDDVMKRAN 150
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M HQ+ L+L EQ+YR++ I +G+ YH
Sbjct: 151 ESLSFSKMTFPHQLMRLILTEQIYRAFRINRGEPYH 186
>gi|95931032|ref|ZP_01313760.1| protein of unknown function DUF163 [Desulfuromonas acetoxidans DSM
684]
gi|95132928|gb|EAT14599.1| protein of unknown function DUF163 [Desulfuromonas acetoxidans DSM
684]
Length = 158
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ + ++ VGK ++ DEY +LK Y V++++L+ + A E A
Sbjct: 1 MKLTILCVGKLSLPFLKEGRDEYRQRLKRYLPVDEIELKEEKRGGKKATADFVRNHEAEA 60
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ I + +V+ LDE G + SE++A + + G + + IGG YG +R+R +
Sbjct: 61 LTARIPAGSYVIGLDEKGRRLSSEKLAANLERHMNQGTANVCLIIGGAYGLTEALRQRCD 120
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M + HQ+A + L EQLYR+ TI++ + YH+
Sbjct: 121 SLLSLSDMTMTHQMARMFLYEQLYRAMTIIRREPYHN 157
>gi|406894515|gb|EKD39309.1| hypothetical protein ACD_75C00442G0002 [uncultured bacterium]
Length = 152
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR----SNPKNTGDVKAQIKDEDMAV 134
++ +GK + + V EY +L++Y ++ L+ S P+N+ E M +
Sbjct: 4 ELLFLGKIKDRFIAEGVQEYASRLQHYTSLKITVLKEKGNSQPQNS-------PAEGMLL 56
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ ++ +V LD G S A+ + D G ++ + IGGP GH K+ E A++
Sbjct: 57 LQAVAPGALLVALDAKGTQFSSAGFAQKIADWEMQGIKQVCYLIGGPEGHSAKVLEAADL 116
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M H +A ++LVEQLYR++TI G+ YH
Sbjct: 117 LLSLSKMTFTHDMARMLLVEQLYRAYTINAGEKYH 151
>gi|332662641|ref|YP_004445429.1| ribosomal RNA large subunit methyltransferase H [Haliscomenobacter
hydrossis DSM 1100]
gi|332331455|gb|AEE48556.1| Ribosomal RNA large subunit methyltransferase H [Haliscomenobacter
hydrossis DSM 1100]
Length = 157
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKA-QIK-DEDMAVMNIISSDDWVVMLDENGLDIG 155
Y +LK+Y E + L + KN G ++A Q+K E ++ + +DD +++LDE G
Sbjct: 23 YERRLKHYLSYETV-LIPDVKNGGKLEAEQLKIKEGEQILQRLKNDDCLILLDERGKLYT 81
Query: 156 SEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQ 215
SEQ A M R+ F +GG +G + +RAN + LS+M +HQ+ L +EQ
Sbjct: 82 SEQFAANMDQWFQAPYKRLVFQVGGAFGFSEAVYQRANYKLSLSAMTFSHQMIRLFFLEQ 141
Query: 216 LYRSWTILKGQNYHH 230
LYR+ TIL+ + YH+
Sbjct: 142 LYRAMTILRNEPYHN 156
>gi|195979047|ref|YP_002124291.1| rRNA large subunit methyltransferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|238689795|sp|B4U126.1|RLMH_STREM RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|195975752|gb|ACG63278.1| hypothetical protein Sez_1959 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++I VGK + ++ + EY +L +C+ + ++L P D + Q + E
Sbjct: 1 MKIKLICVGKLKEAYLRDGIAEYQKRLSRFCQCDIIELADEKTPDKASDAEKQQIMAKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ + D+V+ L G + SEQ + L+ + G S I+F IGG G ++ R
Sbjct: 61 DRIKKKLGQRDFVIALAIEGKQLASEQFSHLLSEVTVKGYSDIAFVIGGSLGLDQSIKNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGLLTLPHQLMRLVLIEQVYRAFMIQQGSPYH 158
>gi|406910487|gb|EKD50498.1| hypothetical protein ACD_62C00525G0002 [uncultured bacterium]
Length = 153
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 97 EYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD--EDMAVMNIISSDDWVVMLDENGLDI 154
EY ++ +Y + + L K++GD +K+ E +++ ++ D++V+ DE G
Sbjct: 23 EYHKRIAHYTATQLITL----KDSGDKNILLKNKKETQTIVSKLTPSDFLVVCDERGQAP 78
Query: 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVE 214
GS A+ + ++ R+ F +GG YG G ++ +AN+ +KLS L H++A +VL+E
Sbjct: 79 GSVAFAKNIAQWRNS-HQRVVFVVGGAYGLGEEVLHKANVKLKLSEFTLPHELARIVLLE 137
Query: 215 QLYRSWTILKGQNYHH 230
Q YR++TIL G+ YHH
Sbjct: 138 QTYRAFTILGGEKYHH 153
>gi|319940204|ref|ZP_08014557.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
anginosus 1_2_62CV]
gi|319810675|gb|EFW07005.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
anginosus 1_2_62CV]
Length = 159
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L + K E ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYVKRLGRFTKFEMIELPDEKTPDKASHLENQQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++V++L G SE+ ++ + + G S I+F IGG G +++R
Sbjct: 61 NHILSKINDKEFVIVLAIEGQQFPSEEFSKRLSNVTVRGFSDITFVIGGSLGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLMMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|288574940|ref|ZP_06393297.1| protein of unknown function DUF163 [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570681|gb|EFC92238.1| protein of unknown function DUF163 [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 154
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGK--------LKYYCKVEDLQLRSNPKNTGDVKAQI 127
+ + V+ VGK + + +D YI + L Y ++D + S K+T
Sbjct: 1 MKLSVLAVGKPKDKSILKGIDSYIKRTTPNLPISLDY---IQDSKGLSPEKST------- 50
Query: 128 KDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK 187
+ E A++ ++S D VV+LDE G + S + + + R+ F IGGP+G G
Sbjct: 51 ERESKAILRYLTSRDHVVLLDERGSTMTSRTFSSYLFSRLKSAQGRLVFIIGGPFGFGED 110
Query: 188 MRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+R+R++ + LS M L H++ LL EQ+YR+ I + +YHH
Sbjct: 111 VRKRSDEMLSLSPMTLTHEMCLLFFSEQIYRALMISRNTSYHH 153
>gi|339006761|ref|ZP_08639336.1| ribosomal RNA large subunit methyltransferase H [Brevibacillus
laterosporus LMG 15441]
gi|338775970|gb|EGP35498.1| ribosomal RNA large subunit methyltransferase H [Brevibacillus
laterosporus LMG 15441]
Length = 159
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA----QIK-DE 130
+ I +ITVGK + ++ + EY+ +L YCK+ +++ ++ K ++ A Q+K E
Sbjct: 1 MQITIITVGKLKEKYLKEGIAEYVKRLSAYCKLNVVEV-NDEKAPEELSATEMEQVKRKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D +V+ L G SE+++ M G S+++F IGG G ++ +
Sbjct: 60 GERILAHIKQDHYVIALAIEGQMWSSEKLSSEMDKLALHGRSQVAFVIGGSLGLADEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ + S M L HQ+ LVLVEQ+YR++ I +G+ YH
Sbjct: 120 RADAKLSFSKMTLPHQLMRLVLVEQIYRAFRISRGEPYH 158
>gi|309802741|ref|ZP_07696845.1| rRNA large subunit m3Psi methyltransferase RlmH [Bifidobacterium
dentium JCVIHMP022]
gi|308220805|gb|EFO77113.1| rRNA large subunit m3Psi methyltransferase RlmH [Bifidobacterium
dentium JCVIHMP022]
Length = 159
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIK-DED 131
+ I +ITVGK + ++ + +Y +L YCK++ +++ P++ G+ ++ QIK E
Sbjct: 1 MKITLITVGKVKEKYLRDAIADYTKRLGRYCKLDIVEVADEKTPEHAGEGLERQIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D +V+ L G + SE++A + G G S I IGG G P + +R
Sbjct: 61 ERIARYIRDDAFVIALAIEGKQLTSEELAAKIDGLGLHGTSHIQLIIGGSLGLDPSILQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ADYLLSFSRMTFPHQLMRVILLEQIYRAYKINAGEPYH 158
>gi|357633004|ref|ZP_09130882.1| SPOUT methyltransferase [Desulfovibrio sp. FW1012B]
gi|357581558|gb|EHJ46891.1| SPOUT methyltransferase [Desulfovibrio sp. FW1012B]
Length = 154
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
P+R++ VG ++ + Y+ L+ Y E++ +R + + +E A++
Sbjct: 3 PVRLLVVGAAKAPWFRDAAAHYLMALRRYLPAEEVVVRDG--KASEAARRKTEEGKALLG 60
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I + D++V+LDE G + S +A + SF +GG +G P++ RA++++
Sbjct: 61 KIGARDFLVVLDEGGTSLTSRALAGRLRTMVEDPGRSPSFVVGGAFGLSPEVLARADMTL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L L H++A +VL EQLYR+ I G YHH
Sbjct: 121 ALGPGTLPHELARVVLYEQLYRAAAINAGAPYHH 154
>gi|258645557|ref|ZP_05733026.1| alpha/beta knot family protein [Dialister invisus DSM 15470]
gi|260402913|gb|EEW96460.1| alpha/beta knot family protein [Dialister invisus DSM 15470]
Length = 159
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 82 TVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-TGDVKAQI-KDEDMAVMNI 137
+GK + ++ ++EY +LK K++ L+ P+N + VK ++ + E ++
Sbjct: 7 AIGKIKEKWMREGIEEYSKRLKPVAKMDVLESDEEKMPENPSAAVKGKVLEKEGEKLLRS 66
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I VV+LD NG + SE++A + G S F IGGPYG+G ++ RA++ +
Sbjct: 67 IQDSGCVVLLDMNGKKVSSEELAAWIAQKTIMGTSHFYFIIGGPYGNGKNIQARADLKLS 126
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ M HQ+A L+L EQLYR+ I + YH
Sbjct: 127 MGPMTFTHQMARLILFEQLYRAVKINHHEPYH 158
>gi|225350866|ref|ZP_03741889.1| hypothetical protein BIFPSEUDO_02440 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158322|gb|EEG71564.1| hypothetical protein BIFPSEUDO_02440 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 159
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIK-DED 131
+ I +ITVGK + ++ + EY +L YCK++ +++ P++ + V+ QIK E
Sbjct: 1 MKISLITVGKVKEQYLRDAIAEYSKRLSRYCKLDIVEVADEKTPEHASEGVERQIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D +V+ L G + SE++A+ + G G S I IGG G P + +R
Sbjct: 61 ERIAKHIRDDAFVIALAIEGQQLTSEELAQKIDGLGVHGTSHIQLIIGGSLGLDPTIVKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQLYR+ I G+ YH
Sbjct: 121 ADYLLSFSKMTFPHQLMRVILLEQLYRACKINAGEPYH 158
>gi|160946269|ref|ZP_02093480.1| hypothetical protein PEPMIC_00231 [Parvimonas micra ATCC 33270]
gi|158447792|gb|EDP24787.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Parvimonas micra ATCC 33270]
Length = 160
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 88/160 (55%), Gaps = 7/160 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQ------LRSNPKNTGDVKAQIKD 129
+ I+++ VGK + DEY ++ + K+E ++ L P +++ +K
Sbjct: 1 MNIKILCVGKLSEKFFKDACDEYKKRISAFSKIEIIEIPEEKILTQTPSKL-EIENVLKK 59
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E+ ++N IS D+V+ L+ G I SE ++ + + + G S+ F IGG +G G +++
Sbjct: 60 EEGRILNKISDSDFVITLEILGKSIDSENFSKFLEEKMNDGNSKFIFVIGGSFGLGDEIK 119
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+N + S L HQ+ +VL+EQ+YR++ I+ Q YH
Sbjct: 120 KRSNFKLSFSKFTLPHQLFRVVLLEQIYRAFKIMNNQIYH 159
>gi|309776753|ref|ZP_07671727.1| alpha/beta knot family protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308915501|gb|EFP61267.1| alpha/beta knot family protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 158
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PK-NTGDVKAQIKD-EDMA 133
I++I VGK + ++ ++EY +L+ + K+E +++ P+ N+ +Q+K+ E
Sbjct: 2 IKIIAVGKIKEKALRAQIEEYTKRLRPFTKLEIIEVNDEVAPQSNSVAQNSQVKEKEGEK 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I D+V++LD G + SEQ A+ + + S ++F I G G G + ER N
Sbjct: 62 ILSKIKDQDYVILLDLWGEMVDSEQFAQKLDQLQTYQTSNLTFVIAGSLGPGSNIYERCN 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
KLS + HQ+ ++++EQ+YR++ I YH
Sbjct: 122 WKWKLSDLTFTHQMTRVLVLEQIYRAYMIKNNNPYH 157
>gi|306834597|ref|ZP_07467709.1| alpha/beta knot family protein [Streptococcus bovis ATCC 700338]
gi|336065239|ref|YP_004560098.1| putative SPOUT methyltransferase [Streptococcus pasteurianus ATCC
43144]
gi|304423233|gb|EFM26387.1| alpha/beta knot family protein [Streptococcus bovis ATCC 700338]
gi|334283439|dbj|BAK31012.1| predicted SPOUT methyltransferase [Streptococcus pasteurianus ATCC
43144]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ +++I +GK + ++ + EY ++ + K E ++L P N + Q ++ E
Sbjct: 1 MKVKIIAIGKLKEKYLKDGIAEYGKRMSRFAKFEIVELADEKTPDNASAAQNQQIMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D+V++L G + S ++++ DA G S I F IGG G K+++R
Sbjct: 61 ERILAKISERDYVIVLAIEGKQLSSAAFSKVIADATLRGYSDIVFVIGGSLGLADKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANLRLSFGLLTLPHQLMRLVLSEQIYRAFMIQQGSPYH 158
>gi|229014625|ref|ZP_04171739.1| hypothetical protein bmyco0001_50250 [Bacillus mycoides DSM 2048]
gi|228746636|gb|EEL96525.1| hypothetical protein bmyco0001_50250 [Bacillus mycoides DSM 2048]
Length = 167
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMAVMNIISSDDWVVMLDEN 150
+ EY+ +L Y KVE ++L P+N + I + E + +++ IS D V+ L
Sbjct: 28 IAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIRILDKISDDTHVIALAIE 87
Query: 151 GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210
G SE+ A + + G S+I+F IGG G ++ +R+N S+ S M L HQ+ L
Sbjct: 88 GKQKSSEEFAVSIDRLATYGKSKITFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRL 147
Query: 211 VLVEQLYRSWTILKGQNYH 229
VL+EQ+YR++ I +G+ YH
Sbjct: 148 VLLEQVYRAFRINRGEPYH 166
>gi|386578977|ref|YP_006075383.1| hypothetical protein [Streptococcus suis GZ1]
gi|145690651|gb|ABP91157.1| Uncharacterized conserved protein [Streptococcus suis 05ZYH33]
gi|292559440|gb|ADE32441.1| hypothetical protein SSGZ1_1985 [Streptococcus suis GZ1]
Length = 167
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA 125
I YN + I++ITVGK + ++ + EY +L + K++ ++L P +
Sbjct: 3 ICYNY--FMKIKLITVGKLKEKYLKEGIAEYSKRLGRFTKLDMIELPDEKTPDKASQAEN 60
Query: 126 Q--IKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183
+ +K E +M+ I D+V+ L G SE+ ++ + D G S I+F IGG G
Sbjct: 61 EQILKKEADRIMSKIGERDFVIALAIEGKQFPSEEFSQRISDIAVNGYSDITFIIGGSLG 120
Query: 184 HGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++RAN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 LDSCIKKRANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYH 166
>gi|326797777|ref|YP_004315596.1| ribosomal RNA large subunit methyltransferase H [Sphingobacterium
sp. 21]
gi|326548541|gb|ADZ76926.1| Ribosomal RNA large subunit methyltransferase H [Sphingobacterium
sp. 21]
Length = 158
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVK--AQIKDEDMA 133
+ I ++ +GK + +D+Y+ +LK+Y + + + KNT + Q E
Sbjct: 1 MKITLLCIGKTDESYLNTGIDKYLQRLKHYINFS-MTIIPDIKNTKHLSPDQQKAKEAEQ 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ +++ D +V+LDE G+ S A+ + G + F IGGPYG + RA
Sbjct: 60 ISKQLNATDTIVLLDEKGMAPRSIDFAKYLERHMLNGTQHLVFIIGGPYGFDNSLYVRAQ 119
Query: 194 IS-IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ + LS+M +HQ+ L VEQLYR+++IL+G+ YHH
Sbjct: 120 KNKLSLSNMTFSHQMIRLFFVEQLYRAFSILRGEPYHH 157
>gi|227891720|ref|ZP_04009525.1| SPOUT methyltransferase superfamily protein [Lactobacillus
salivarius ATCC 11741]
gi|227866523|gb|EEJ73944.1| SPOUT methyltransferase superfamily protein [Lactobacillus
salivarius ATCC 11741]
Length = 166
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-------RSNPKNTGDVKAQIKDE 130
I++I VGK + ++ + EY +L +CK + +++ + +P VK + E
Sbjct: 10 IKIIGVGKLKEKYLKQGIAEYAKRLGTFCKFQIVEVPDEKAPEKLSPAEMEGVKEK---E 66
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I ++V L G + SE+ A+ + D G+ G S I+F IGG G P++ +
Sbjct: 67 GERILAKIKDKEYVYALAIEGKERSSEEFAKELADLGTYGTSDITFVIGGSLGLSPEVLK 126
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN I L HQ+ +VL EQ+YR + I G+ YH
Sbjct: 127 RANTKISFGRFTLPHQLMRMVLTEQIYRGFMINAGRPYH 165
>gi|373252109|ref|ZP_09540227.1| hypothetical protein NestF_04266 [Nesterenkonia sp. F]
Length = 152
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I V+ VG+K ++ + +L+ K DL P ++ D A +E +++
Sbjct: 3 ITVVAVGRKHESWAVEGIERWTKRLR---KPYDLSWTLLPHSSRDGDAARAEESARLLDA 59
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D V++LDE G ++ S Q+A+ + TG S I+ +GG YG ++ RAN+
Sbjct: 60 VKPADHVILLDERGKNLSSPQLADHLQSRFDTGHS-IALLVGGAYGVSEEVHTRANMVWS 118
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS +V HQ+ L+L EQ+YR+ I G+ YHH
Sbjct: 119 LSQLVFPHQLVRLILAEQVYRAQEISAGRPYHH 151
>gi|338812630|ref|ZP_08624800.1| hypothetical protein ALO_10944 [Acetonema longum DSM 6540]
gi|337275414|gb|EGO63881.1| hypothetical protein ALO_10944 [Acetonema longum DSM 6540]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDEDMA 133
I ++ VGK + + + EY +L YC+++ +++ P N D + Q + E
Sbjct: 3 ISIVCVGKIKEKYLTAGIAEYTKRLTPYCRLDIIEVDEERMPDNPSDAEKQQVLSREGDK 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I + ++V LD G + SE+++ + D G S I+F IGG +G P++ A
Sbjct: 63 LLKNIRAASYLVALDVYGKQLSSEELSAKLDDLALKGQSDITFAIGGAFGIAPQVLAAAK 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L EQ+YR+ I +G+ YH
Sbjct: 123 ERLSFSKMTFTHQMVRLLLAEQIYRAVKIGRGEPYH 158
>gi|223933955|ref|ZP_03625914.1| protein of unknown function DUF163 [Streptococcus suis 89/1591]
gi|302024666|ref|ZP_07249877.1| rRNA large subunit methyltransferase [Streptococcus suis 05HAS68]
gi|330833799|ref|YP_004402624.1| hypothetical protein SSUST3_2029 [Streptococcus suis ST3]
gi|386585199|ref|YP_006081602.1| hypothetical protein SSUD9_2200 [Streptococcus suis D9]
gi|223897374|gb|EEF63776.1| protein of unknown function DUF163 [Streptococcus suis 89/1591]
gi|329308022|gb|AEB82438.1| protein of unknown function DUF163 [Streptococcus suis ST3]
gi|353737345|gb|AER18354.1| protein of unknown function DUF163 [Streptococcus suis D9]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EY +L + K++ ++L P + + +K E
Sbjct: 1 MKIKLITVGKLKEKYLKEGIAEYSKRLGRFTKLDMIELPDEKTPDKASQAENEQILKKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M+ I D+V+ L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 DRIMSKIGERDFVIALAIEGKQFPSEEFSQKLSDIAVNGYSDITFIIGGSLGLDSCIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYH 158
>gi|424788779|ref|ZP_18215529.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
intermedius BA1]
gi|422112559|gb|EKU16346.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
intermedius BA1]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY +L + K + ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGISEYTKRLNRFTKFDIIELPDEKTPDKASHLENQQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ ++ ++V+ L G SE+ ++++ D G S I+F IGG G +++R
Sbjct: 61 TRILSKLADKEFVIALAIEGQQFPSEKFSKILSDITIRGISDITFVIGGSLGLSTDVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|226315490|ref|YP_002775386.1| hypothetical protein BBR47_59050 [Brevibacillus brevis NBRC 100599]
gi|254807108|sp|C0ZA28.1|RLMH_BREBN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|226098440|dbj|BAH46882.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PK--NTGDVKAQIKDED 131
+ I +ITVGK + ++ +DEY +L YCK++ +++ P+ + +++ + E
Sbjct: 1 MQISIITVGKLKEKYLREGIDEYSKRLSAYCKLQVIEVNDEKAPEEMSAAEMEQVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L +G SE+++ M G S+++F IGG G ++ +R
Sbjct: 61 ERILAQIKQDQYVIALAIDGQMWSSEKLSAEMDKLALHGRSQVAFVIGGSLGLADQVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 121 ADALLSFSKMTFPHQLVRLVLLEQVYRAFRISRGEPYH 158
>gi|194467429|ref|ZP_03073416.1| protein of unknown function DUF163 [Lactobacillus reuteri 100-23]
gi|194454465|gb|EDX43362.1| protein of unknown function DUF163 [Lactobacillus reuteri 100-23]
Length = 169
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
L I++I VGK + + + EY +L YCK E +++ +A++ DE MA
Sbjct: 11 LNIKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEM-DEVMAKE 69
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +
Sbjct: 70 GERILDKIKDREYVYALAIKGKERSSEEFAKEINKLTTYGHSDITFVIGGSLGLSPAVLK 129
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 130 RADAQISFGRFTLPHQLMRLVLSEQIYRAFTIINGLPYH 168
>gi|297172569|gb|ADI23539.1| uncharacterized conserved protein [uncultured Gemmatimonadales
bacterium HF0770_41L09]
Length = 156
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT-GDVKAQIKDEDMAV 134
+ ++++ VGK + Q V EY + Y K+ ++ S + T + +K E +
Sbjct: 1 MKVQILAVGKVKGPFAQSVA-EYEKRAARYWKLGVEEVSSGARGTSANPDLVLKTEATRL 59
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ IS + VV L +G+ + S ++A+ + T ++ + F IGG YG G + RA
Sbjct: 60 LARISKELEVVALTRSGMTMDSRELAKYLEHRALTASAGVVFIIGGAYGLGEGVLARAQQ 119
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M L HQ+A LVL EQLYR+ TIL+G+ YH
Sbjct: 120 ELSLSPMTLPHQVARLVLSEQLYRAGTILRGEPYH 154
>gi|406969299|gb|EKD93976.1| hypothetical protein ACD_28C00011G0007 [uncultured bacterium]
Length = 153
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ + + VGK + + + DE++ +L +C VE+L + + + + Q+K E A
Sbjct: 1 MKLLFLQVGKTKEASYRAIEDEFLKRLGAFCSVEELTVEVSTPERENKELQMKLEKWAQK 60
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ V+MLD G + SE A+ + A ++ IGGP+G + A+
Sbjct: 61 G--QGEYRVLMLDRGGRSMRSEAFADWIRVARDYEGGKVMVVIGGPHGFTEETLAYADER 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M HQ+ L ++EQLYR + IL G++YHH
Sbjct: 119 LSLSEMTFTHQMVRLFILEQLYRGFMILAGKSYHH 153
>gi|94265234|ref|ZP_01288994.1| Protein of unknown function DUF163 [delta proteobacterium MLMS-1]
gi|93454268|gb|EAT04581.1| Protein of unknown function DUF163 [delta proteobacterium MLMS-1]
Length = 162
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--------KAQIKD 129
+ ++ +GK R + +D++ +L+ Y ++E +++ PK G + I++
Sbjct: 3 LELLLLGKTRQDYLARGIDDFSRRLRRYVELE-IKVIKPPKPPGAAGRQGGGAERELIRE 61
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +++ ++ +V LD G ++ S +A+L+ G SR+SF +GG G +
Sbjct: 62 EGRLLLSRLTPGSCLVALDAGGRELDSPGLADLLERWQQQGKSRLSFVLGGHLGLDSAVL 121
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
ERA + + LS + H++A L+L+EQLYR+WTI +G NYH
Sbjct: 122 ERAELVLALSRLTFTHEMARLLLLEQLYRAWTIQQGGNYH 161
>gi|354558842|ref|ZP_08978095.1| Ribosomal RNA large subunit methyltransferase H [Desulfitobacterium
metallireducens DSM 15288]
gi|353545166|gb|EHC14618.1| Ribosomal RNA large subunit methyltransferase H [Desulfitobacterium
metallireducens DSM 15288]
Length = 160
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKD-ED 131
L + I VGK + +Q + EY +L Y +++ +++ P K + + ++++ E
Sbjct: 2 LQAKAIAVGKVKEKYLQDGIKEYTKRLSSYLRLDIIEVADEPCPEKLSAAEEDRVREKEG 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +++ D+VV+LD G ++ S ++A + + G S I++ IGG G ++RER
Sbjct: 62 ERILKVLNPQDYVVLLDLKGKELTSPELANFIDELALHGRSNIAWVIGGSLGVADEVRER 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S + HQ+ ++L+EQ+YR+ I KG+ YH
Sbjct: 122 ADFRWSFSKLTFPHQLMRMMLLEQVYRAMKISKGEPYH 159
>gi|317130975|ref|YP_004097257.1| hypothetical protein Bcell_4299 [Bacillus cellulosilyticus DSM
2522]
gi|315475923|gb|ADU32526.1| protein of unknown function DUF163 [Bacillus cellulosilyticus DSM
2522]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +I+VGK + ++ +DEY +L Y ++ +++ P+N + + QIK E
Sbjct: 1 MNISIISVGKLKEKYLKQGIDEYKKRLSAYANIQIVEVADEKAPENLSNTEMEQIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ +S D +V+ L G SE++A+ + G S+++F IGG G ++ +R
Sbjct: 61 ERILSKLSPDTYVIALAIEGEKWSSEKLAKQLDQLALHGKSKVAFIIGGSLGLSKEIMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S+M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 121 SQAQLSFSNMTFPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|45358600|ref|NP_988157.1| rRNA large subunit methyltransferase [Methanococcus maripaludis S2]
gi|74554435|sp|Q6LYF4.1|RLMH_METMP RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|44921358|emb|CAF30593.1| Protein of unknown function DUF163 [Methanococcus maripaludis S2]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
+ +I+VGK + + + EY ++ Y K++ +++ P+N DV+ ++ E
Sbjct: 3 VTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEAER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +++ L+ G ++ SE +A+ + D +G S I+F IGG G + E ++
Sbjct: 63 ILKYLKKDSFLITLEILGKELTSEDLAKKINDLSISGKSDITFVIGGSLGLSKNISEISD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 123 FKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYH 158
>gi|239828681|ref|YP_002951305.1| hypothetical protein GWCH70_3402 [Geobacillus sp. WCH70]
gi|259491713|sp|C5D9W1.1|RLMH_GEOSW RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|239808974|gb|ACS26039.1| protein of unknown function DUF163 [Geobacillus sp. WCH70]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I +I+VGK + + +DEY +L Y KV+ +++ P++ + + QIK E
Sbjct: 3 IHIISVGKLKEKYLMQGIDEYKKRLSSYAKVDIIEVPDEKAPEHLSEQEMEQIKQREGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +D +V+ L G SEQ A + + G S+I+F IGG G ++ +RA+
Sbjct: 63 ILAKIPNDAYVIALAIEGKMKSSEQFAASLDKLATYGKSKIAFIIGGSLGLSKQVMQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 EALSFSKMTFPHQLMRLILLEQIYRAFRINRGEPYH 158
>gi|427393030|ref|ZP_18886933.1| rRNA large subunit m3Psi methyltransferase RlmH [Alloiococcus
otitis ATCC 51267]
gi|425730961|gb|EKU93791.1| rRNA large subunit m3Psi methyltransferase RlmH [Alloiococcus
otitis ATCC 51267]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ ++VI VGK + ++ ++EY +L Y K E +++ P+N + Q+K E
Sbjct: 1 MQVKVIAVGKLKEKYLKKGIEEYAKRLGAYTKFEIVEVADEEAPENLSQAEMNQVKALEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ +SS + V LD NG + SE A+ + D + G S+++F IGG G ++ +R
Sbjct: 61 DRILQKLSSQEVVFALDLNGKQMTSEDFAQTLEDKMTYGQSKLTFIIGGSLGLSQEVLDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A + M HQ+ L++ EQ+YR++ I++ + YH
Sbjct: 121 AQHRLSFGPMTFPHQVMRLIIAEQVYRAFRIIRNEPYH 158
>gi|205375556|ref|ZP_03228344.1| SPOUT methyltransferase superfamily protein [Bacillus coahuilensis
m4-4]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +ITVGK + ++ +DEY+ +L Y KV+ +++ P+ + I E
Sbjct: 1 MNISIITVGKLKEKYLKQGIDEYLKRLSAYAKVDIIEVPDEKAPEQLSETDMLIVKNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I D V+ L G SE++A + + G S+++F IGG G + +R
Sbjct: 61 ERILNKIGQDVHVIALAIEGNMQTSEELAANLDRLATYGKSKVAFVIGGSLGLSDDVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ LVLVEQ+YR++ I +G+ YH
Sbjct: 121 ANEKLSFSKMTFPHQLMRLVLVEQVYRAFRINRGEPYH 158
>gi|423071805|ref|ZP_17060578.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
intermedius F0413]
gi|355363579|gb|EHG11316.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
intermedius F0413]
Length = 159
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKDEDM 132
+ I+++TVGK + ++ + EY +L + K + ++L ++ K + QI D++
Sbjct: 1 MKIKLVTVGKLKEKYLKDGISEYTKRLNRFTKFDIIELPDEKTPDKASYLENQQILDKEG 60
Query: 133 A-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
A +++ ++ ++V++L G SE+ ++++ D G S I+F IGG G +++R
Sbjct: 61 ARILSKLADKEFVIVLAIEGQQFPSEKFSKILSDITIRGISDITFVIGGSLGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|229065118|ref|ZP_04200411.1| hypothetical protein bcere0026_51710 [Bacillus cereus AH603]
gi|229136284|ref|ZP_04265031.1| hypothetical protein bcere0014_51530 [Bacillus cereus BDRD-ST196]
gi|229170161|ref|ZP_04297848.1| hypothetical protein bcere0007_50950 [Bacillus cereus AH621]
gi|228613306|gb|EEK70444.1| hypothetical protein bcere0007_50950 [Bacillus cereus AH621]
gi|228647156|gb|EEL03244.1| hypothetical protein bcere0014_51530 [Bacillus cereus BDRD-ST196]
gi|228716147|gb|EEL67866.1| hypothetical protein bcere0026_51710 [Bacillus cereus AH603]
Length = 170
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMAVMNIISSDDWVVMLDEN 150
+ EY+ +L Y KVE ++L P+N + I + E + +++ IS D V+ L
Sbjct: 31 IAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIRILDKISDDTHVIALAIE 90
Query: 151 GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210
G SE+ A + + G S+I+F IGG G ++ +R+N S+ S M L HQ+ L
Sbjct: 91 GKQKSSEEFAVSIDRLATYGKSKITFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRL 150
Query: 211 VLVEQLYRSWTILKGQNYH 229
VL+EQ+YR++ I +G+ YH
Sbjct: 151 VLLEQVYRAFRINRGEPYH 169
>gi|227364333|ref|ZP_03848426.1| SPOUT methyltransferase superfamily protein [Lactobacillus reuteri
MM2-3]
gi|227543747|ref|ZP_03973796.1| SPOUT methyltransferase superfamily protein [Lactobacillus reuteri
CF48-3A]
gi|325683532|ref|ZP_08163048.1| alpha/beta knot family protein [Lactobacillus reuteri MM4-1A]
gi|338203536|ref|YP_004649681.1| alpha/beta knot family protein [Lactobacillus reuteri SD2112]
gi|227070646|gb|EEI08976.1| SPOUT methyltransferase superfamily protein [Lactobacillus reuteri
MM2-3]
gi|227186272|gb|EEI66343.1| SPOUT methyltransferase superfamily protein [Lactobacillus reuteri
CF48-3A]
gi|324977882|gb|EGC14833.1| alpha/beta knot family protein [Lactobacillus reuteri MM4-1A]
gi|336448776|gb|AEI57391.1| alpha/beta knot family protein [Lactobacillus reuteri SD2112]
Length = 173
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
L I++I VGK + + + EY +L YCK E +++ +A++ DE MA
Sbjct: 15 LNIKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEM-DEVMAKE 73
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +
Sbjct: 74 GERILDKIKDREYVYALAIKGKERSSEEFAKEINKLTTYGHSDITFVIGGSLGLSPAVLK 133
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 134 RADAQISFGRFTLPHQLMRLVLSEQIYRAFTIINGLPYH 172
>gi|418071304|ref|ZP_12708578.1| rRNA large subunit methyltransferase [Lactobacillus rhamnosus
R0011]
gi|421769134|ref|ZP_16205842.1| LSU m3Psi1915 methyltransferase RlmH [Lactobacillus rhamnosus
LRHMDP2]
gi|421772035|ref|ZP_16208692.1| LSU m3Psi1915 methyltransferase RlmH [Lactobacillus rhamnosus
LRHMDP3]
gi|423079194|ref|ZP_17067868.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
rhamnosus ATCC 21052]
gi|357538798|gb|EHJ22818.1| rRNA large subunit methyltransferase [Lactobacillus rhamnosus
R0011]
gi|357547541|gb|EHJ29422.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
rhamnosus ATCC 21052]
gi|411184264|gb|EKS51397.1| LSU m3Psi1915 methyltransferase RlmH [Lactobacillus rhamnosus
LRHMDP3]
gi|411184883|gb|EKS52013.1| LSU m3Psi1915 methyltransferase RlmH [Lactobacillus rhamnosus
LRHMDP2]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-----TGDVKAQIKDE 130
I++I VGK + + + EY+ ++ + KV +++ P+N DVKA+ E
Sbjct: 3 IKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVTIIEVADEKAPENLSEAEMADVKAK---E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +
Sbjct: 60 GERILHKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFVIGGSLGLSPAVMK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 158
>gi|229577505|ref|YP_001199557.2| rRNA large subunit methyltransferase [Streptococcus suis 05ZYH33]
gi|253754644|ref|YP_003027785.1| rRNA large subunit methyltransferase [Streptococcus suis P1/7]
gi|253756577|ref|YP_003029717.1| rRNA large subunit methyltransferase [Streptococcus suis BM407]
gi|386581044|ref|YP_006077449.1| rRNA large subunit methyltransferase [Streptococcus suis JS14]
gi|386583124|ref|YP_006079528.1| rRNA large subunit methyltransferase [Streptococcus suis SS12]
gi|386589253|ref|YP_006085654.1| rRNA large subunit methyltransferase [Streptococcus suis A7]
gi|403062583|ref|YP_006650799.1| rRNA large subunit methyltransferase [Streptococcus suis S735]
gi|229576684|sp|A4VYG8.2|RLMH_STRSY RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|251819041|emb|CAZ56888.1| conserved hypothetical protein [Streptococcus suis BM407]
gi|251820890|emb|CAR47656.1| conserved hypothetical protein [Streptococcus suis P1/7]
gi|319759236|gb|ADV71178.1| rRNA large subunit methyltransferase [Streptococcus suis JS14]
gi|353735270|gb|AER16280.1| rRNA large subunit methyltransferase [Streptococcus suis SS12]
gi|354986414|gb|AER45312.1| rRNA large subunit methyltransferase [Streptococcus suis A7]
gi|402809909|gb|AFR01401.1| rRNA large subunit methyltransferase [Streptococcus suis S735]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EY +L + K++ ++L P + + +K E
Sbjct: 1 MKIKLITVGKLKEKYLKEGIAEYSKRLGRFTKLDMIELPDEKTPDKASQAENEQILKKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M+ I D+V+ L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 DRIMSKIGERDFVIALAIEGKQFPSEEFSQRISDIAVNGYSDITFIIGGSLGLDSCIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYH 158
>gi|450181538|ref|ZP_21887884.1| rRNA large subunit methyltransferase [Streptococcus mutans 24]
gi|449246274|gb|EMC44584.1| rRNA large subunit methyltransferase [Streptococcus mutans 24]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK--VEDLQLRSNPKNTGDVKAQ--IKDED 131
+ +++ITVGK + ++ + EY +LK + K +E+L P N + ++ E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYCKRLKRFTKFELEELPDEKIPNNASQAQNTYILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N IS+ ++V++L G SE+ ++L+ G S ++F IGG G ++++R
Sbjct: 61 QRILNKISNREFVIVLAIEGKQFSSEKFSQLLFATMLKGYSDLTFVIGGSLGLSQEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + + L HQ+ LV VEQ+YR++ I +G YH
Sbjct: 121 ASMLMSFGLLTLPHQLMRLVFVEQIYRAFMIQEGSPYH 158
>gi|116496215|ref|YP_807949.1| rRNA large subunit methyltransferase [Lactobacillus casei ATCC 334]
gi|239630663|ref|ZP_04673694.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067816|ref|YP_003789839.1| hypothetical protein LCAZH_2804 [Lactobacillus casei str. Zhang]
gi|417981987|ref|ZP_12622651.1| rRNA large subunit methyltransferase [Lactobacillus casei 12A]
gi|417984872|ref|ZP_12625486.1| rRNA large subunit methyltransferase [Lactobacillus casei 21/1]
gi|417988139|ref|ZP_12628690.1| rRNA large subunit methyltransferase [Lactobacillus casei 32G]
gi|417991070|ref|ZP_12631517.1| rRNA large subunit methyltransferase [Lactobacillus casei A2-362]
gi|417994452|ref|ZP_12634783.1| rRNA large subunit methyltransferase [Lactobacillus casei CRF28]
gi|417997562|ref|ZP_12637815.1| rRNA large subunit methyltransferase [Lactobacillus casei M36]
gi|418000430|ref|ZP_12640622.1| rRNA large subunit methyltransferase [Lactobacillus casei T71499]
gi|418003533|ref|ZP_12643613.1| rRNA large subunit methyltransferase [Lactobacillus casei UCD174]
gi|418006402|ref|ZP_12646356.1| rRNA large subunit methyltransferase [Lactobacillus casei UW1]
gi|418009243|ref|ZP_12649075.1| rRNA large subunit methyltransferase [Lactobacillus casei UW4]
gi|418012099|ref|ZP_12651839.1| rRNA large subunit methyltransferase [Lactobacillus casei Lc-10]
gi|418014217|ref|ZP_12653827.1| rRNA large subunit methyltransferase [Lactobacillus casei Lpc-37]
gi|122262387|sp|Q033W5.1|RLMH_LACC3 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|116106365|gb|ABJ71507.1| hypothetical protein LSEI_2793 [Lactobacillus casei ATCC 334]
gi|239526946|gb|EEQ65947.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300440223|gb|ADK19989.1| conserved hypothetical protein [Lactobacillus casei str. Zhang]
gi|410521390|gb|EKP96355.1| rRNA large subunit methyltransferase [Lactobacillus casei 12A]
gi|410521608|gb|EKP96568.1| rRNA large subunit methyltransferase [Lactobacillus casei 32G]
gi|410523796|gb|EKP98716.1| rRNA large subunit methyltransferase [Lactobacillus casei 21/1]
gi|410530078|gb|EKQ04861.1| rRNA large subunit methyltransferase [Lactobacillus casei CRF28]
gi|410532198|gb|EKQ06908.1| rRNA large subunit methyltransferase [Lactobacillus casei M36]
gi|410532234|gb|EKQ06943.1| rRNA large subunit methyltransferase [Lactobacillus casei A2-362]
gi|410536695|gb|EKQ11287.1| rRNA large subunit methyltransferase [Lactobacillus casei T71499]
gi|410542032|gb|EKQ16494.1| rRNA large subunit methyltransferase [Lactobacillus casei UCD174]
gi|410543694|gb|EKQ18046.1| rRNA large subunit methyltransferase [Lactobacillus casei UW1]
gi|410543961|gb|EKQ18303.1| rRNA large subunit methyltransferase [Lactobacillus casei UW4]
gi|410550900|gb|EKQ24981.1| rRNA large subunit methyltransferase [Lactobacillus casei Lc-10]
gi|410554253|gb|EKQ28232.1| rRNA large subunit methyltransferase [Lactobacillus casei Lpc-37]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-----TGDVKAQIKDE 130
I++I VGK + + + EY+ ++ + KV+ +++ P+N DVKA+ D
Sbjct: 3 IKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKAKEGDR 62
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +
Sbjct: 63 ---ILGKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFVIGGSLGLSPAVMK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 158
>gi|163865336|gb|ABY46395.1| protein of unknown function DUF163 [Bacillus weihenstephanensis
KBAB4]
Length = 177
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMAVMNIISSDDWVVMLDEN 150
+ EY+ +L Y KVE ++L P+N + I + E + +++ IS D V+ L
Sbjct: 38 IAEYLKRLSSYAKVEVIELPDEKAPENLSAAEMLIVKEKEGIRILDKISDDTHVIALAIE 97
Query: 151 GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210
G SE+ A + + G S+I+F IGG G ++ +R+N S+ S M L HQ+ L
Sbjct: 98 GKQKSSEEFAVSIDRLATYGKSKITFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRL 157
Query: 211 VLVEQLYRSWTILKGQNYH 229
VL+EQ+YR++ I +G+ YH
Sbjct: 158 VLLEQVYRAFRINRGEPYH 176
>gi|392956520|ref|ZP_10322047.1| rRNA large subunit methyltransferase [Bacillus macauensis ZFHKF-1]
gi|391877502|gb|EIT86095.1| rRNA large subunit methyltransferase [Bacillus macauensis ZFHKF-1]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +ITVGK + ++L +DEY +L+ Y K++ +++ P+ + I K E
Sbjct: 3 ILIITVGKLKEKYLKLGIDEYTKRLRPYAKIDIIEVPDEKAPETLSSQEMHIVKKAEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ + G I SE +A + + G S+++F IGG G + +RAN
Sbjct: 63 LLAKIPPDAHVIAMAIEGKLISSEDLAANLDQLATYGKSKVAFVIGGSLGLSDDVMKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EKISFGRITYPHQLMKLVLVEQVYRAFRIVRGEPYH 158
>gi|310826259|ref|YP_003958616.1| alpha/beta knot family protein [Eubacterium limosum KIST612]
gi|308737993|gb|ADO35653.1| alpha/beta knot family protein [Eubacterium limosum KIST612]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN---PKNTGDVKAQ-IKDED 131
+ I++ITVGK + +++ +DEY +L YC++E ++++ + + KA+ + E
Sbjct: 1 MNIKIITVGKIKEKYLRMAIDEYSKRLGAYCRLEIIEVKDEKIEERFSDAEKARAVALEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ + ++ + L G + S A+ + G G S ++F IGG G P++ R
Sbjct: 61 ERIARYLKDNEIIAALKITGRQLTSPDFAKKIEHYGLQGKSSLTFVIGGSLGLAPEIEAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 AHWDLSFSKMTFPHQLFRVMLLEQVYRAFKIIKNETYH 158
>gi|417912729|ref|ZP_12556415.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU109]
gi|418325228|ref|ZP_12936435.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU071]
gi|341657221|gb|EGS80914.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU109]
gi|365228477|gb|EHM69658.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU071]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L+ Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLRPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRSFKIMRGEAYH 158
>gi|42525168|ref|NP_970548.1| hypothetical protein Bd3845 [Bdellovibrio bacteriovorus HD100]
gi|61217576|sp|Q6MGS7.1|RLMH_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|39577379|emb|CAE81202.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 156
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 76/133 (57%)
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157
Y K+ ++ + L++ D + +E ++ I+SDD+VV+ DE G + S
Sbjct: 23 YKKKISFFIPFDIQSLKAKKSAREDADFKRNEESELILKNINSDDYVVLFDERGSVLDSI 82
Query: 158 QMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLY 217
Q ++ + + + R F IGG +G ++R+RA++ + LS MV+NH +A + +EQ+Y
Sbjct: 83 QFSKKVENILGSSKKRAIFIIGGAFGVNEEVRKRADLKVALSPMVMNHLMAQAMSLEQIY 142
Query: 218 RSWTILKGQNYHH 230
R++TI+K YH+
Sbjct: 143 RAFTIIKKIPYHN 155
>gi|383316828|ref|YP_005377670.1| rRNA large subunit m3Psi methyltransferase RlmH [Frateuria aurantia
DSM 6220]
gi|379043932|gb|AFC85988.1| rRNA large subunit m3Psi methyltransferase RlmH [Frateuria aurantia
DSM 6220]
Length = 156
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMAVMN 136
R+I +G++ V ++Y +L +E ++L+ + G D +A+ +DE V+
Sbjct: 4 RLIAIGERMPAWVAEGYEDYRKRLGRELALELVELKPGMRGKGRDDARAR-QDEGTTVLA 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ D V+ LD G SEQ+A + G ++F IGGP GH P++ RAN
Sbjct: 63 ALGRDTHVIALDGTGKTWSSEQLAGELAGWRMLGRD-LAFLIGGPDGHAPEVLARANQRW 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + LVLVEQLYR+ TI+ G YH
Sbjct: 122 SLGPLTLPHMLVRLVLVEQLYRAGTIMTGHPYH 154
>gi|433447825|ref|ZP_20411201.1| ribosomal RNA large subunit methyltransferase H [Anoxybacillus
flavithermus TNO-09.006]
gi|431999666|gb|ELK20582.1| ribosomal RNA large subunit methyltransferase H [Anoxybacillus
flavithermus TNO-09.006]
Length = 182
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMA 133
I +I VGK + ++ ++EY+ +L Y K++ +++ P+ + + ++ K E
Sbjct: 26 IYIIAVGKLKEKYLKQGIEEYMKRLSTYAKMDIVEVADEKAPEQLSEQQMELVKKKEGER 85
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ ++ D V+ L G + SEQ A+ + + G S+I+F IGG G + +RAN
Sbjct: 86 ILAKVTDDMHVIALAIEGKMMSSEQFAQTLDRLATYGKSKIAFVIGGSLGLSDDVMKRAN 145
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M HQ+ L+L EQ+YR++ I +G+ YH
Sbjct: 146 ESLSFSKMTFPHQLMRLILTEQIYRAFRINRGEPYH 181
>gi|191639741|ref|YP_001988907.1| rRNA large subunit methyltransferase [Lactobacillus casei BL23]
gi|385821526|ref|YP_005857913.1| Alpha/beta knot family protein [Lactobacillus casei LC2W]
gi|385824705|ref|YP_005861047.1| Alpha/beta knot family protein [Lactobacillus casei BD-II]
gi|238693016|sp|B3WBI0.1|RLMH_LACCB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|190714043|emb|CAQ68049.1| UPF0247 protein LSEI_2793 [Lactobacillus casei BL23]
gi|327383853|gb|AEA55329.1| Alpha/beta knot family protein [Lactobacillus casei LC2W]
gi|327387032|gb|AEA58506.1| Alpha/beta knot family protein [Lactobacillus casei BD-II]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-----TGDVKAQIKDE 130
I++I VGK + + + EY+ ++ + KV+ +++ P+N DVKA+ D
Sbjct: 3 IKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKAKEGDR 62
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +
Sbjct: 63 ---ILGKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGYSDITFVIGGSLGLSPAVMK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 158
>gi|386587278|ref|YP_006083680.1| rRNA large subunit methyltransferase [Streptococcus suis D12]
gi|389857694|ref|YP_006359937.1| rRNA large subunit methyltransferase [Streptococcus suis ST1]
gi|417091636|ref|ZP_11956442.1| rRNA large subunit methyltransferase [Streptococcus suis R61]
gi|353532942|gb|EHC02610.1| rRNA large subunit methyltransferase [Streptococcus suis R61]
gi|353739424|gb|AER20432.1| rRNA large subunit methyltransferase [Streptococcus suis D12]
gi|353741412|gb|AER22419.1| rRNA large subunit methyltransferase [Streptococcus suis ST1]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EY +L + K++ ++L P + + +K E
Sbjct: 1 MKIKLITVGKLKEKYLKEGIAEYSKRLGRFTKLDMIELPDEKTPDKASQAENEQILKKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M+ I D+V+ L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 DRIMSKIGERDFVIALAIEGKQFPSEEFSQKISDIAVNGYSDITFIIGGSLGLDSCIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYH 158
>gi|315222847|ref|ZP_07864732.1| conserved hypothetical protein TIGR00246 [Streptococcus anginosus
F0211]
gi|315188083|gb|EFU21813.1| conserved hypothetical protein TIGR00246 [Streptococcus anginosus
F0211]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L + K + ++L P ++ Q + E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYVKRLGRFTKFDMIELPDEKTPDKASHLENQQILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I+ ++++ L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 TRILSKITDKEFMIALAIEGQQFPSEEFSKRLSDVTVCGFSDITFVIGGSLGLSTAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>gi|78357334|ref|YP_388783.1| SPOUT methyltransferase [Desulfovibrio alaskensis G20]
gi|118574546|sp|Q30Z08.1|RLMH_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|78219739|gb|ABB39088.1| SPOUT methyltransferase [Desulfovibrio alaskensis G20]
Length = 155
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
IR+I VG+ ++ + + Y+ +L KVE+ ++ ++ + E ++
Sbjct: 4 IRIIAVGRLKTAHWKTAAEHYLTRLTRAFKVEETIIKDGNAALPPLERNAQ-EGARIVAA 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
++ D V +DE G S+Q + + R F IGG YG ++R +A ++
Sbjct: 63 LTPADLAVCMDETGRQFTSQQFSAFLTPMWENANLRPCFIIGGAYGLSDEVRGKARHTMA 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS+M H++A +VL EQLYR+ IL+G YHH
Sbjct: 123 LSAMTFPHEMARVVLYEQLYRADAILRGTPYHH 155
>gi|417886107|ref|ZP_12530255.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus oris
F0423]
gi|341593974|gb|EGS36785.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus oris
F0423]
Length = 173
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
L I+VI VGK + + + EY +L +CK E +++ +A++ DE MA
Sbjct: 15 LNIKVIGVGKLKEKYFKAGIAEYAKRLGRFCKFEIVEVPDEKAPESLSQAEM-DEVMAKE 73
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +
Sbjct: 74 GERILGKIKDREYVFALAIKGKERTSEEFAKEINQLTTYGHSDITFVIGGSLGLSPAVLK 133
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 134 RADTQISFGRFTLPHQLMRLVLTEQIYRAFTIINGLPYH 172
>gi|417809369|ref|ZP_12456050.1| SPOUT methyltransferase superfamily protein [Lactobacillus
salivarius GJ-24]
gi|335350293|gb|EGM51789.1| SPOUT methyltransferase superfamily protein [Lactobacillus
salivarius GJ-24]
Length = 166
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPK--NTGDVKAQIKDEDMA 133
I++I VGK + ++ + EY +L +CK + +++ P+ + +++ + E
Sbjct: 10 IKIIGVGKLKEKYLKQGIAEYAKRLGTFCKFQIVEVPDEKAPEKLSLAEMEGVKEKEGER 69
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE+ A+ + D G+ G S I+F IGG G P++ +RAN
Sbjct: 70 ILAKIKDKEYVYALAIEGKERSSEEFAKELADLGTYGTSDITFVIGGSLGLSPEVLKRAN 129
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ +VL EQ+YR + I G+ YH
Sbjct: 130 TKISFGRFTLPHQLMRMVLTEQIYRGFMINAGRPYH 165
>gi|303256637|ref|ZP_07342651.1| putative SPOUT methyltransferase [Burkholderiales bacterium 1_1_47]
gi|330999274|ref|ZP_08322991.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Parasutterella excrementihominis YIT 11859]
gi|302860128|gb|EFL83205.1| putative SPOUT methyltransferase [Burkholderiales bacterium 1_1_47]
gi|329575132|gb|EGG56683.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Parasutterella excrementihominis YIT 11859]
Length = 155
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I V+ VG K ++Y+ + K+E +++ +NT + ++ E +
Sbjct: 3 ISVVAVGLKMPKWADEACEDYLHRFPSDWKLELKTVKAEDRNTRTIPKVMQAEAERIRAA 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D V++DE G D S ++A+ + G G I+F IGG G P ++ A+ +++
Sbjct: 63 LPKDAIKVIMDERGADPTSTKLAQQINRWGDQGRP-IAFIIGGADGIDPGLKAEADFTLR 121
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LSS+ L H +A ++L+EQ+YRSW++L YH
Sbjct: 122 LSSLTLPHAMARVLLLEQIYRSWSLLHNHPYH 153
>gi|148543270|ref|YP_001270640.1| rRNA large subunit methyltransferase [Lactobacillus reuteri DSM
20016]
gi|184152681|ref|YP_001841022.1| rRNA large subunit methyltransferase [Lactobacillus reuteri JCM
1112]
gi|166919097|sp|A5VHH9.1|RLMH_LACRD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|229564363|sp|B2G510.1|RLMH_LACRJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|148530304|gb|ABQ82303.1| protein of unknown function DUF163 [Lactobacillus reuteri DSM
20016]
gi|183224025|dbj|BAG24542.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA---- 133
I++I VGK + + + EY +L YCK E +++ +A++ DE MA
Sbjct: 3 IKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEM-DEVMAKEGE 61
Query: 134 -VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +RA
Sbjct: 62 RILDKIKDREYVYALAIKGKERSSEEFAKEINKLTTYGHSDITFVIGGSLGLSPAVLKRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 122 DAQISFGRFTLPHQLMRLVLSEQIYRAFTIINGLPYH 158
>gi|259047878|ref|ZP_05738279.1| alpha/beta knot family protein [Granulicatella adiacens ATCC 49175]
gi|259035555|gb|EEW36810.1| alpha/beta knot family protein [Granulicatella adiacens ATCC 49175]
Length = 159
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I +++VGK + ++ +DEY +L YCK + +++ P+N D + + ++ E
Sbjct: 1 MNITIVSVGKLKEKYLKQGIDEYAKRLGSYCKFQVVEVPDEKAPENLSDKEMEQVLEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D VV + G + S+Q+A+ M G S + F IGG G P +++R
Sbjct: 61 ERILAKIKDGDVVVAMAIEGDLVSSKQLAKEMDTFALHGKSSMVFVIGGSLGLSPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ I + L HQ+ LVL EQ+YR++ I G YH
Sbjct: 121 ADRKISFGRITLPHQLMRLVLTEQIYRAFRINSGHAYH 158
>gi|410595420|ref|YP_006952147.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
agalactiae SA20-06]
gi|421532771|ref|ZP_15979119.1| rRNA large subunit methyltransferase [Streptococcus agalactiae
STIR-CD-17]
gi|403641948|gb|EJZ02851.1| rRNA large subunit methyltransferase [Streptococcus agalactiae
STIR-CD-17]
gi|410519059|gb|AFV73203.1| Ribosomal RNA large subunit methyltransferase H [Streptococcus
agalactiae SA20-06]
Length = 159
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ +++ITVGK + ++ V EY +L + K+E ++L ++ K + +I D E
Sbjct: 1 MKLKIITVGKLKEKYLKEGVAEYQKRLNRFSKIETIELADEKTPDKASVSENQRILDIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D+V+ L G + SE + L+ +G S I+F IGG G PK+++R
Sbjct: 61 ERILSKIGERDYVIGLAIEGKQLPSESFSHLIDQKMISGYSTITFVIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ADYLMSFGLLTLPHQLMKLVLMEQIYRAFMIRQGTPYH 158
>gi|303327759|ref|ZP_07358199.1| putative SPOUT methyltransferase superfamily [Desulfovibrio sp.
3_1_syn3]
gi|302862120|gb|EFL85054.1| putative SPOUT methyltransferase superfamily [Desulfovibrio sp.
3_1_syn3]
Length = 157
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAVM 135
P+R+I+VG+ ++ + Y+ ++ + ++E ++R + D + + E ++
Sbjct: 5 PLRLISVGRLKTPFWKDAAAHYLARITRWRRLECTEVRDGDAALPPDRRNSL--EGRRIL 62
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ D ++LDE GL + S Q+A L+ R F +GG +G +R RA
Sbjct: 63 EALAPQDVPLVLDERGLSLTSPQLAALLRQLDQEARGRACFIVGGAWGLDEAVRGRAYRL 122
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS+M L H++A +VL+EQLYR+ IL+ YHH
Sbjct: 123 ISLSAMTLPHELARVVLLEQLYRAECILRKVPYHH 157
>gi|116490224|ref|YP_809768.1| hypothetical protein OEOE_0108 [Oenococcus oeni PSU-1]
gi|290889606|ref|ZP_06552696.1| hypothetical protein AWRIB429_0086 [Oenococcus oeni AWRIB429]
gi|419759229|ref|ZP_14285535.1| hypothetical protein AWRIB304_1814 [Oenococcus oeni AWRIB304]
gi|419857212|ref|ZP_14379922.1| hypothetical protein AWRIB202_1042 [Oenococcus oeni AWRIB202]
gi|419858156|ref|ZP_14380834.1| hypothetical protein AWRIB129_146 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421183874|ref|ZP_15641303.1| hypothetical protein AWRIB318_119 [Oenococcus oeni AWRIB318]
gi|421187532|ref|ZP_15644891.1| hypothetical protein AWRIB419_281 [Oenococcus oeni AWRIB419]
gi|421193338|ref|ZP_15650587.1| hypothetical protein AWRIB553_949 [Oenococcus oeni AWRIB553]
gi|421195853|ref|ZP_15653056.1| hypothetical protein AWRIB568_1857 [Oenococcus oeni AWRIB568]
gi|421196330|ref|ZP_15653519.1| hypothetical protein AWRIB576_407 [Oenococcus oeni AWRIB576]
gi|122277585|sp|Q04HG9.1|RLMH_OENOB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|116090949|gb|ABJ56103.1| hypothetical protein OEOE_0108 [Oenococcus oeni PSU-1]
gi|290480804|gb|EFD89438.1| hypothetical protein AWRIB429_0086 [Oenococcus oeni AWRIB429]
gi|399904151|gb|EJN91613.1| hypothetical protein AWRIB304_1814 [Oenococcus oeni AWRIB304]
gi|399968511|gb|EJO02944.1| hypothetical protein AWRIB318_119 [Oenococcus oeni AWRIB318]
gi|399968740|gb|EJO03172.1| hypothetical protein AWRIB419_281 [Oenococcus oeni AWRIB419]
gi|399972542|gb|EJO06742.1| hypothetical protein AWRIB553_949 [Oenococcus oeni AWRIB553]
gi|399974979|gb|EJO09048.1| hypothetical protein AWRIB568_1857 [Oenococcus oeni AWRIB568]
gi|399977530|gb|EJO11510.1| hypothetical protein AWRIB576_407 [Oenococcus oeni AWRIB576]
gi|410498277|gb|EKP89733.1| hypothetical protein AWRIB202_1042 [Oenococcus oeni AWRIB202]
gi|410499080|gb|EKP90517.1| hypothetical protein AWRIB129_146 [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 160
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDED 131
L IR++ VGK + + +D+Y+ +L + K+E ++++ K++ ++ E
Sbjct: 2 LNIRILVVGKIKEKYFRNALDQYLKRLSRFTKIEIIEVKDEATPEKASKSENLEILQTEG 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I++ D+V+ L G I S +A+++ + G S I F IGG G +++ R
Sbjct: 62 GRLLDKINNRDFVIALAIEGKLITSPDLADMIREIPLDGYSTIDFVIGGSLGLSNEIKNR 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN I + L HQ+A ++L EQ+YRS+ I +G YH
Sbjct: 122 ANAKISFGRITLPHQLARVLLTEQIYRSFMINEGSPYH 159
>gi|395785755|ref|ZP_10465483.1| rRNA large subunit m3Psi methyltransferase RlmH [Bartonella tamiae
Th239]
gi|423717350|ref|ZP_17691540.1| rRNA large subunit m3Psi methyltransferase RlmH [Bartonella tamiae
Th307]
gi|395424213|gb|EJF90400.1| rRNA large subunit m3Psi methyltransferase RlmH [Bartonella tamiae
Th239]
gi|395427565|gb|EJF93656.1| rRNA large subunit m3Psi methyltransferase RlmH [Bartonella tamiae
Th307]
Length = 160
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ-----IKDE 130
+ IRV VG+ + Q + Y + + L L S G+ +AQ +++E
Sbjct: 1 MQIRVFAVGRMKKGAEQELAQRYFDRFSKIAPLSGLTL-SKIVEIGESRAQTHLQRMEEE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+ ++ + + +++LDE G+ S ++ + + +G ++ +GGP GH +R+
Sbjct: 60 GIKLLETLPVNGQLIVLDERGIHYSSSNFSKKIENYRDSGHRHLTIALGGPDGHSDDIRK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA++ + +M HQIA ++L EQLYR+ TIL G YH
Sbjct: 120 RADLILSFGAMTWPHQIARILLAEQLYRAATILNGHPYH 158
>gi|295697805|ref|YP_003591043.1| hypothetical protein [Kyrpidia tusciae DSM 2912]
gi|295413407|gb|ADG07899.1| protein of unknown function DUF163 [Kyrpidia tusciae DSM 2912]
Length = 162
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKV--EDLQLRSNPK--NTGDVKAQIKDE 130
++ + ++ VGK + Y+ +L +Y V +++ + PK N G+ + E
Sbjct: 3 SIQVHILAVGKLKERYWAEAAQAYLKRLSFYADVYLDEVPDQPVPKTPNPGERDGVLAAE 62
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
A++ I DWV L +G SEQ AE S GA+R F +GG G ++
Sbjct: 63 GEALLGRIKDRDWVTALTLDGRRWTSEQFAEQWQGWMSRGAARYVFVVGGTLGLHYRVTR 122
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ LS + HQ+A ++++EQLYR++ IL+G YH
Sbjct: 123 RADALWSLSPLTFPHQMARVIVLEQLYRAFQILRGGTYH 161
>gi|365091973|ref|ZP_09329224.1| rRNA large subunit methyltransferase [Acidovorax sp. NO-1]
gi|363415710|gb|EHL22836.1| rRNA large subunit methyltransferase [Acidovorax sp. NO-1]
Length = 155
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIESAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV LDE G ++ ++ +AE + G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVALDERGTNLTTKALAERL-KGWQLGGDDVALVIGGPDGLDPAFRQAAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|386392624|ref|ZP_10077405.1| hypothetical protein DesU5LDRAFT_2027 [Desulfovibrio sp. U5L]
gi|385733502|gb|EIG53700.1| hypothetical protein DesU5LDRAFT_2027 [Desulfovibrio sp. U5L]
Length = 154
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
P+R++ VG ++ + Y+ L+ Y E++ +R K + +I +E ++
Sbjct: 3 PVRLLVVGAAKAPWFRAAAAHYLTALRRYLPAEEVVVRDG-KAAEAARRKI-EEGKTLLG 60
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I + D++V+LDE G + S +A + SF +GG +G P++ RA++++
Sbjct: 61 KIGARDFLVVLDEAGTSLTSRALAGRLRTMVEDPGRAPSFVVGGAFGLSPEVLARADMTL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L L H++A +VL EQLYR+ I G YHH
Sbjct: 121 ALGPGTLPHELARVVLYEQLYRAAAINAGAPYHH 154
>gi|409998601|ref|YP_006753002.1| ribosomal RNA large subunit methyltransferase H [Lactobacillus
casei W56]
gi|406359613|emb|CCK23883.1| Ribosomal RNA large subunit methyltransferase H [Lactobacillus
casei W56]
Length = 165
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKN-----TGDVKAQIK 128
+ I++I VGK + + + EY+ ++ + KV+ +++ P+N DVKA+
Sbjct: 7 MNIKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKAKEG 66
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
D ++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P +
Sbjct: 67 DR---ILGKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGYSDITFVIGGSLGLSPAV 123
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+RAN ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 124 MKRANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 164
>gi|254468207|ref|ZP_05081613.1| alpha/beta knot family protein [beta proteobacterium KB13]
gi|207087017|gb|EDZ64300.1| alpha/beta knot family protein [beta proteobacterium KB13]
Length = 154
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
I++I++G + + + ++D Y K+ Y K+E +LQL+S N +K + + E ++
Sbjct: 3 IKIISIGSQPNKEINHLIDSYSHKVSAYSKIEWINLQLKSKDNN---IKFKKELESRNIL 59
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ I S+ +V+ LDE G S +M++ + + S+I+F IGG G + +++N+
Sbjct: 60 SKIDSNAFVISLDEKGQTFSSVEMSQKL-EKIMLNHSKINFIIGGADGLDQAVLDKSNLV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS++ L HQ+ + L+EQ+YRS++I+ YH
Sbjct: 119 MSLSNLTLPHQLVKVFLIEQIYRSYSIINNLPYH 152
>gi|426405682|ref|YP_007024653.1| hypothetical protein Bdt_3713 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425862350|gb|AFY03386.1| hypothetical protein Bdt_3713 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 152
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 76/133 (57%)
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157
Y K+ ++ + L++ D + +E ++ I+SDD+VV+ DE G + S
Sbjct: 19 YKKKISFFIPFDIQSLKAKKSAREDADFKRNEESELILKNINSDDYVVLFDERGSVLDSI 78
Query: 158 QMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLY 217
Q ++ + + + R F IGG +G ++R+RA++ + LS MV+NH +A + +EQ+Y
Sbjct: 79 QFSKKVENILGSSKKRAIFIIGGAFGVNEEVRKRADLKVALSPMVMNHLMAQAMSLEQIY 138
Query: 218 RSWTILKGQNYHH 230
R++TI+K YH+
Sbjct: 139 RAFTIIKKIPYHN 151
>gi|427412672|ref|ZP_18902864.1| rRNA large subunit m3Psi methyltransferase RlmH [Veillonella ratti
ACS-216-V-Col6b]
gi|425716479|gb|EKU79463.1| rRNA large subunit m3Psi methyltransferase RlmH [Veillonella ratti
ACS-216-V-Col6b]
Length = 158
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-RSNPKNTGDVKAQ--IKDEDM 132
+ ++ VGK ++ ++ V E++ +L Y V +L S + D K Q + +E
Sbjct: 1 MKFTILAVGKLKTAYLRDGVAEFVKRLTVYGGVTITELNESKLPSADDSKRQAIVAEEGE 60
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ ++ +VV+LD G + SE +AE + D G S ++F IGG +G +R RA
Sbjct: 61 RLLKQVNPKSYVVLLDVKGKTMSSEALAEKIADLEVQGISEMTFIIGGAFGVSEALRIRA 120
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ L+LVEQ+YR+ I + + YH
Sbjct: 121 DFRLSFSPMTFTHQMVRLLLVEQIYRACKINRHEPYH 157
>gi|294101974|ref|YP_003553832.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293616954|gb|ADE57108.1| protein of unknown function DUF163 [Aminobacterium colombiense DSM
12261]
Length = 154
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ I +ITVG+ R+ + +++EY + + + +E + + KA I+ E ++
Sbjct: 1 MKIVIITVGQPRNQNIAELINEYSKRCRPFMPLEFEHVPEARGASAPEKA-IEQESDGLL 59
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I + D++V+LDE G S ++ + + R+ F IGG +G ++++R+ +
Sbjct: 60 KRIKNRDYLVLLDEKGEQFTSVAFSQWVYRSIGEVRGRLVFVIGGSHGVAERVKKRSQVK 119
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS + H++ LL L EQLYR+ I +G +YHH
Sbjct: 120 IALSMLTFPHELCLLFLTEQLYRAIAIHEGMSYHH 154
>gi|289704719|ref|ZP_06501142.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Micrococcus luteus SK58]
gi|289558529|gb|EFD51797.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Micrococcus luteus SK58]
Length = 152
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ +GKK V +D Y +LK K DL R P + +A +E ++
Sbjct: 1 MSVRVLAIGKKHEAWVVDGIDRYERRLK---KPHDLSWRLLPHSARQEEAARTEESDRIL 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ +D+ +++LDE G S +A + GA ++ IGG YG ++ RA+
Sbjct: 58 GAVGADEHLILLDERGTAFDSPGLARHLQSRFDVGAP-VTMVIGGAYGVDARVHARADRV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS +V HQ+ L+L EQ+YR+ I G+ YHH
Sbjct: 117 WSLSPLVFPHQLVRLILAEQVYRAQEISAGRPYHH 151
>gi|210612658|ref|ZP_03289406.1| hypothetical protein CLONEX_01608 [Clostridium nexile DSM 1787]
gi|210151460|gb|EEA82468.1| hypothetical protein CLONEX_01608 [Clostridium nexile DSM 1787]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ I +ITVGK + ++ + EY +L YCK+E +++ ++ + + +V+ QI+ E
Sbjct: 1 MKITLITVGKIKEKYLKDAIAEYSKRLSKYCKLEIVEVADEKTPDQASENVERQIRQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D +V L+ G + S A+ M G G S + F IGG G G ++ R
Sbjct: 61 ERILRYVKDDAYVFTLEIGGTMLDSVAFAKKMETLGIQGKSHLIFIIGGSIGLGEEVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YR + I++G YH
Sbjct: 121 SDYALSFSKMTFPHQLMRVILLEQVYRGYRIIEGAPYH 158
>gi|444910545|ref|ZP_21230729.1| methyltransferase RlmH [Cystobacter fuscus DSM 2262]
gi|444719164|gb|ELW59963.1| methyltransferase RlmH [Cystobacter fuscus DSM 2262]
Length = 147
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 83 VGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDD 142
+G+ RS + V EY +L +Y + E ++L G E A++ D
Sbjct: 1 MGRDRSGLYEPAVQEYASRLAHYTRFELVELPEAGGKKGKATDARALEADALLARRKPQD 60
Query: 143 WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV 202
+V LDE G + S + + +G A GA + IGG G ++R+ A++ + LS M
Sbjct: 61 LLVALDERGKLLDSVEFSRYVGRA-RDGAKDLLLVIGGDEGLDERVRQSADLILSLSKMT 119
Query: 203 LNHQIALLVLVEQLYRSWTILKGQNYH 229
L H++A +VLVEQLYR++T+LKG+ YH
Sbjct: 120 LPHRLARVVLVEQLYRAFTLLKGEPYH 146
>gi|77411770|ref|ZP_00788106.1| conserved hypothetical protein TIGR00246 [Streptococcus agalactiae
CJB111]
gi|77162161|gb|EAO73136.1| conserved hypothetical protein TIGR00246 [Streptococcus agalactiae
CJB111]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ +++ITVGK + ++ V EY +L + K+E ++L ++ K + +I D E
Sbjct: 1 MKLKIITVGKLKEKYLKEGVAEYQKRLNRFSKIETIELADEKTPDKASISENQRILDIEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D+V+ L G + SE + L+ +G S I+F IGG G PK+++R
Sbjct: 61 ERILSKIGERDYVIGLAIEGKQLPSESFSHLIDQKMISGYSTITFVIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ADYLMSFGLLTLPHQLMKLVLMEQIYRAFMIRQGTPYH 158
>gi|90961031|ref|YP_534947.1| rRNA large subunit methyltransferase [Lactobacillus salivarius
UCC118]
gi|301299926|ref|ZP_07206157.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|385839853|ref|YP_005863177.1| Ribosomal RNA large subunit methyltransferase H (rRNA
(pseudouridine-N3-)-methyltransferase rlmH) (23S
ribosomal RNA m3Psi1915 methyltransferase)
[Lactobacillus salivarius CECT 5713]
gi|118574445|sp|Q1WVS1.1|RLMH_LACS1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|90820225|gb|ABD98864.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
gi|300213974|gb|ADJ78390.1| Ribosomal RNA large subunit methyltransferase H (rRNA
(pseudouridine-N3-)-methyltransferase rlmH) (23S
ribosomal RNA m3Psi1915 methyltransferase)
[Lactobacillus salivarius CECT 5713]
gi|300852471|gb|EFK80124.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-------RSNPKNTGDVKAQIKDE 130
I++I VGK + ++ + EY +L +CK + +++ + +P VK + E
Sbjct: 3 IKIIGVGKLKEKYLKQGIAEYAKRLGTFCKFQIVEVPDEKAPEKLSPAEMEGVKEK---E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I ++V L G + SE+ A+ + D G+ G S I+F IGG G P++ +
Sbjct: 60 GERILAKIKDKEYVYALAIEGKERSSEEFAKELEDLGTYGTSDITFVIGGSLGLSPEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN I L HQ+ +VL EQ+YR + I G+ YH
Sbjct: 120 RANTKISFGRFTLPHQLMRMVLAEQIYRGFMINAGRPYH 158
>gi|119477458|ref|ZP_01617649.1| hypothetical protein GP2143_00752 [marine gamma proteobacterium
HTCC2143]
gi|119449384|gb|EAW30623.1| hypothetical protein GP2143_00752 [marine gamma proteobacterium
HTCC2143]
Length = 155
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKDEDMAVMN 136
IR++ VG K V+ VDEY +L K+E ++ + G D++ I +E +
Sbjct: 3 IRLLAVGTKMPKWVEQGVDEYCKRLPPELKLEVKEIALGKRGKGADIRRAIANEGQQMQA 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I D VV LD G +EQ+A + D GA+ IS +GGP G + +RA+
Sbjct: 63 AIGDRDRVVALDVKGKPWSTEQLAGNLRDWQLDGAN-ISLLVGGPDGLAQECLDRADQHW 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS++ L H + +VL EQLYR+WTI YH
Sbjct: 122 SLSALTLPHPLVRIVLAEQLYRAWTINNNHPYH 154
>gi|15643607|ref|NP_228653.1| hypothetical protein TM0844 [Thermotoga maritima MSB8]
gi|403252585|ref|ZP_10918894.1| ribosomal RNA large subunit methyltransferase H [Thermotoga sp.
EMP]
gi|418044986|ref|ZP_12683082.1| SPOUT methyltransferase [Thermotoga maritima MSB8]
gi|32171929|sp|Q9WZU8.1|RLMH_THEMA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|4981377|gb|AAD35926.1|AE001751_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678068|gb|EHA61215.1| SPOUT methyltransferase [Thermotoga maritima MSB8]
gi|402812075|gb|EJX26555.1| ribosomal RNA large subunit methyltransferase H [Thermotoga sp.
EMP]
Length = 151
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R+ +GK ++ + Y L+ +CK E L+++ + G ++ ++ E +
Sbjct: 1 MRVRIAVIGKLDGF-IKEGIKHYEKFLRRFCKPEVLEIKRVHR--GSIEEIVRKETEDLT 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
N I +V+++D+ G ++ SE+ A+ + D G I+ IGGPYG ++ +A+
Sbjct: 58 NRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKD-ITILIGGPYGLNEEIFAKAHRV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H + +L+++EQ++R++ I+ G+NYH+
Sbjct: 117 FSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHY 151
>gi|420172877|ref|ZP_14679374.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM067]
gi|394241143|gb|EJD86561.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM067]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I+S V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKINSQSTVITLEIKGKMVSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|222110900|ref|YP_002553164.1| rRNA large subunit methyltransferase [Acidovorax ebreus TPSY]
gi|254807116|sp|B9MJ26.1|RLMH_ACIET RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|221730344|gb|ACM33164.1| protein of unknown function DUF163 [Acidovorax ebreus TPSY]
Length = 155
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV+LDE G + ++ +A+ + D G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVVLDERGTSLTTKALAQRLKD-WQLGGDDVALVIGGPDGLEPAFRQAAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|445114321|ref|ZP_21377880.1| rRNA large subunit m3Psi methyltransferase RlmH [Prevotella
nigrescens F0103]
gi|444840739|gb|ELX67764.1| rRNA large subunit m3Psi methyltransferase RlmH [Prevotella
nigrescens F0103]
Length = 156
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS--NPKNTGDVKAQIKDEDMAVMNI 137
+I VGK + +Y G++ +Y + + N K + + + ++ ++ ++
Sbjct: 5 LILVGKTTEEVFVRAIADYAGRIAHYLPFNIVTIPELKNTKKLSEAQQKAREGEL-ILRE 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D VV+LDE+G + S A + +T A R+ F IGG YG + R++ I
Sbjct: 64 IQPSDTVVLLDEHGKEFRSVDYAAWLQKKQNT-ARRLVFVIGGAYGFSEAVYSRSDEKIS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M +HQ+ L+ VEQLYR+ +I++G+ YHH
Sbjct: 123 LSKMTFSHQMVRLIFVEQLYRACSIIRGEPYHH 155
>gi|299821109|ref|ZP_07052997.1| alpha/beta knot family protein [Listeria grayi DSM 20601]
gi|299816774|gb|EFI84010.1| alpha/beta knot family protein [Listeria grayi DSM 20601]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIK-DEDMA 133
I++ITVGK + + ++EY+ +L+ Y KV+ ++L P+ + Q+K E
Sbjct: 3 IQIITVGKLKEKYLTQGINEYLKRLQAYAKVQIIELPDEKAPEVLSQAEMEQVKLKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS D VV L G SEQ A + + G S+I F IGG G G + +RA+
Sbjct: 63 ILGKISDDAHVVALAILGKQKTSEQFAAGIEKLMTYGKSKIVFVIGGSLGLGDNVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EEMSFGKLTLPHQLMRLVLVEQVYRAFRIMRGEPYH 158
>gi|421874879|ref|ZP_16306478.1| ribosomal RNA large subunit methyltransferase H [Brevibacillus
laterosporus GI-9]
gi|372456076|emb|CCF16027.1| ribosomal RNA large subunit methyltransferase H [Brevibacillus
laterosporus GI-9]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA----QIK-DE 130
+ I +ITVGK + ++ + EY+ +L YCK+ +++ ++ K ++ A Q+K E
Sbjct: 1 MQITIITVGKLKEKYLKEGIAEYVKRLSAYCKLNVVEV-NDEKAPEELSATEMEQVKRKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I D +V+ L G SE+++ M G S+++F IGG G ++ +
Sbjct: 60 GERILAHIKQDHYVIALAIEGQMWSSEKLSSEMDKLALHGRSQVAFVIGGSLGLADEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ + S M HQ+ LVLVEQ+YR++ I +G+ YH
Sbjct: 120 RADAKLSFSKMTFPHQLMRLVLVEQIYRAFRISRGEPYH 158
>gi|47779368|gb|AAT38597.1| uncharacterized ACR [uncultured gamma proteobacterium eBACHOT4E07]
Length = 154
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I++I++G K + Q ++ Y+ +L K+E + L+S+ +K E +M+
Sbjct: 3 IKIISIGNKLNTWEQDSINFYLKQLPKNLKIEFVNLKSHQNPNYSESEVVKKESQLIMSK 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+S DD+++ D NG I S++ ++L+ + + + I+F IGG +G ++++ +N +
Sbjct: 63 LSKDDFIIAFDMNGDQICSKKFSDLIFNNQESDKT-ITFVIGGSFGLSSEIKDNSNKVLS 121
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S H++ L+LVEQ+YR+ TI+ YH
Sbjct: 122 ASLFTFPHRLFRLILVEQIYRAHTIVNNMPYH 153
>gi|393198868|ref|YP_006460710.1| hypothetical protein SSIL_0141 [Solibacillus silvestris StLB046]
gi|327438199|dbj|BAK14564.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
Length = 159
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I+VGK + +++ ++EY+ +L Y K++ +++ P+ D +I + E
Sbjct: 3 ITIISVGKLKEKYLKMGIEEYVKRLGGYAKIDLVEVPDEKAPEQLSDADMEIVKRKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ +V+ L +G SE+MA + + G S+++F IGG G + +RA+
Sbjct: 63 ILAKINDGTYVIALALDGKMKTSEEMAADLETLMTYGKSKVAFVIGGSLGLHTDVLQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ M L HQ+ LVLVEQ+YRS+ I+KG+ YH
Sbjct: 123 EKLCFGKMTLPHQLMKLVLVEQIYRSFRIIKGEPYH 158
>gi|94267718|ref|ZP_01290968.1| Protein of unknown function DUF163 [delta proteobacterium MLMS-1]
gi|93451880|gb|EAT02613.1| Protein of unknown function DUF163 [delta proteobacterium MLMS-1]
Length = 162
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--------KAQIKD 129
+ ++ +GK R + +D++ +L+ Y ++E +++ PK G + I++
Sbjct: 3 LELLLLGKTRQDYLARGIDDFSRRLRRYVELE-IKVIKPPKPPGAAGRQGGGAERELIRE 61
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E +++ ++ +V LD G + S +A+L+ G SR+SF +GG G +
Sbjct: 62 EGRLLLSRLTPGSCLVALDAGGRQLDSPGLADLLERWQQQGKSRLSFVLGGHLGLDSAVL 121
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
ERA + + LS + H++A L+L+EQLYR+WTI +G NYH
Sbjct: 122 ERAELVLALSRLTFTHEMARLLLLEQLYRAWTIQQGGNYH 161
>gi|259502094|ref|ZP_05744996.1| alpha/beta knot family protein [Lactobacillus antri DSM 16041]
gi|259169907|gb|EEW54402.1| alpha/beta knot family protein [Lactobacillus antri DSM 16041]
Length = 159
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA---- 133
I++I VGK + + + EY +L +CK E +++ +A++ DE MA
Sbjct: 3 IKIIGVGKLKEKYFKAGIAEYAKRLGRFCKFEIVEVPDEKAPESLSQAEM-DEVMAKEGE 61
Query: 134 -VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +RA
Sbjct: 62 RILSKIKDREYVFALAIKGKERTSEEFAKEINQLTTYGHSDITFVIGGSLGLSPAVLKRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 122 DTQISFGRFTLPHQLMRLVLTEQVYRAFTIINGLPYH 158
>gi|291538988|emb|CBL12099.1| conserved hypothetical protein TIGR00246 [Roseburia intestinalis
XB6B4]
Length = 163
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKDED- 131
+ I ++ VGK + + + EY +L YCK++ +++ P+N D V+ QI++++
Sbjct: 1 MKITILCVGKIKEKFYRDAIAEYSKRLSRYCKLDIIEVADEKTPENASDTVENQIREKEA 60
Query: 132 ----MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK 187
M + +V L +G + S ++++ + + G++G S+I F IGG G
Sbjct: 61 ERILMRLDKEAKEGAYVFALAIDGREFDSVELSKKIENLGTSGISQIMFLIGGSLGMSEN 120
Query: 188 MRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +RA+ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 LLKRADCKLSFSKMTFPHQLMRVILLEQVYRSYRIMNGEPYH 162
>gi|261367344|ref|ZP_05980227.1| alpha/beta knot family protein [Subdoligranulum variabile DSM
15176]
gi|282570104|gb|EFB75639.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Subdoligranulum variabile DSM 15176]
Length = 161
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS---NPKNTGD--VKAQIKDEDM 132
+ +I VGK + V EY +L +C L+L KN D + ++ E
Sbjct: 4 VDLICVGKLNASYFAAGVAEYQKRLGGFCNFRILELPEVTIADKNASDKQIAKALEKEGE 63
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
A+++ + ++V L G I SE++A+L+ +GA ++F IG +G +++ A
Sbjct: 64 AILHAVRKGAYLVALCVEGKQISSEELADLLAQRAGSGAGDVAFAIGSSHGLDERVKRAA 123
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L + L HQ+A LVL EQLYR+ TI G YH
Sbjct: 124 QARISLGRITLPHQLARLVLTEQLYRACTINAGMKYH 160
>gi|335424276|ref|ZP_08553287.1| hypothetical protein SSPSH_16334 [Salinisphaera shabanensis E1L3A]
gi|334889927|gb|EGM28211.1| hypothetical protein SSPSH_16334 [Salinisphaera shabanensis E1L3A]
Length = 157
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ--IKDEDMAVM 135
IR++ VG++ V D+Y +L + C++E ++ + K + I DED +
Sbjct: 3 IRLLAVGRRMPAWVTSAYDDYAKRLPHECRLELTEIAPGNRKGQSHKPERAIADEDRRIC 62
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ +S D V+ L +G +EQ+A M + + G R + +GGP G GP RA+
Sbjct: 63 DALSGDQDVIALAIDGKPWTTEQLAAQMREWLADGRDR-ALLVGGPDGLGPNSLARAHRR 121
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + ++L EQL+R+ +IL G YH
Sbjct: 122 WSLSPLTLPHPLVRVILAEQLFRAHSILTGHPYH 155
>gi|253577942|ref|ZP_04855214.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850260|gb|EES78218.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ IR++TVGK + + + EY +L YC++ Q+ ++ K + + QIK+ E
Sbjct: 1 MEIRIVTVGKIKEKYLCDGIAEYAKRLSRYCRLTFCQVADEKTPDKASEALNTQIKNTEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M I D+V+ L +G S ++++ + G +G S I+F IGG G + +R
Sbjct: 61 ERLMKHIREQDYVIALAIDGKTPDSVELSQKIEKLGVSGISSIAFVIGGSLGLSESVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YRS+ I+ + YH
Sbjct: 121 ADYKLSFSRMTFPHQLMQMILLEQIYRSYRIMNHEPYH 158
>gi|240146271|ref|ZP_04744872.1| alpha/beta knot family protein [Roseburia intestinalis L1-82]
gi|257201573|gb|EEU99857.1| alpha/beta knot family protein [Roseburia intestinalis L1-82]
Length = 163
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKDED- 131
+ I ++ VGK + + + EY +L YCK++ +++ P+N D V+ QI++++
Sbjct: 1 MKITILCVGKIKEKFYRDAIAEYSKRLSRYCKLDIIEVADEKTPENASDTVENQIREKEA 60
Query: 132 ----MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK 187
M + +V L +G + S ++++ + + G++G S+I F IGG G
Sbjct: 61 ERILMRLDKEAKEGAYVFALAIDGREFDSVELSKKIENLGTSGISQIVFLIGGSLGMSEN 120
Query: 188 MRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +RA+ + S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 121 LLKRADCKLSFSKMTFPHQLMRVILLEQVYRSYRIMNGEPYH 162
>gi|124485500|ref|YP_001030116.1| hypothetical protein Mlab_0677 [Methanocorpusculum labreanum Z]
gi|167016754|sp|A2SR93.1|RLMH_METLZ RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|124363041|gb|ABN06849.1| protein of unknown function DUF163 [Methanocorpusculum labreanum Z]
Length = 158
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 88/157 (56%), Gaps = 7/157 (4%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKV-----EDLQLRSNPKNTGDVKAQIKDEDM 132
I+++ VGK + + V E+ +L+ Y K+ ++++ N + +++ + ++ ++
Sbjct: 3 IQIVCVGKIKDAYISSGVVEFEKRLRPYGKIFITELAEVKIPDNASASDELRVKEREGEL 62
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ N+ + + LD NG+ + SE+ +++ DA +G + + F IGGP G PK+ +
Sbjct: 63 ILANV-KEGFFKIALDPNGMSLSSEEFSDVFRDAKLSGKN-LCFIIGGPLGLSPKLLQSV 120
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS M H + L+L+EQ+YR++ IL G+ YH
Sbjct: 121 EKKLSLSRMTFTHPMTRLILLEQVYRAFRILNGEPYH 157
>gi|291536150|emb|CBL09262.1| conserved hypothetical protein TIGR00246 [Roseburia intestinalis
M50/1]
Length = 163
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 92/164 (56%), Gaps = 12/164 (7%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIKDEDM 132
+ I ++ VGK + + + EY +L YCK++ +++ P+N D V+ QI++++
Sbjct: 1 MKITILCVGKIKEKFYRDAIAEYSKRLSRYCKLDIIEVADEKTPENASDTVENQIREKEA 60
Query: 133 AVMNIISSDD-------WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG 185
I++ D ++ L +G ++ S ++++ + + G++G S+I F IGG G
Sbjct: 61 E--RILTRLDKEAKEGAYIFALAIDGKELDSVELSKKIENLGTSGISQIVFLIGGSLGMS 118
Query: 186 PKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +RA+ + S M HQ+ +VL+EQ+YRS+ I+ G+ YH
Sbjct: 119 ENLLKRADCKLSFSKMTFPHQLMRVVLLEQIYRSYRIMNGEPYH 162
>gi|212716459|ref|ZP_03324587.1| hypothetical protein BIFCAT_01383 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660712|gb|EEB21287.1| hypothetical protein BIFCAT_01383 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGD-VKAQIK-DED 131
+ I +ITVGK + ++ + EY +L YC+++ +++ P++ + V+ QIK E
Sbjct: 1 MKISLITVGKVKEKYLRDAIAEYSKRLSRYCRLDIVEVADEKTPEHASEGVERQIKAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D +V+ L G + SE++A + G G S I IGG G P + +R
Sbjct: 61 ERIAKHIRDDAFVIALAIEGQQLTSEELARKIDGLGLHGTSHIQLIIGGSLGLDPTIVKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ADYLLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 158
>gi|420181824|ref|ZP_14687983.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM049]
gi|394250931|gb|EJD96062.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM049]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGLYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 SNYALSFSTMTFPHQMMRVILIEQIYRSFKIMRGEAYH 158
>gi|386052574|ref|YP_005970132.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|346645225|gb|AEO37850.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EQISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|229816701|ref|ZP_04446989.1| hypothetical protein COLINT_03749 [Collinsella intestinalis DSM
13280]
gi|229807753|gb|EEP43567.1| hypothetical protein COLINT_03749 [Collinsella intestinalis DSM
13280]
Length = 156
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAV 134
+ I V+ VGK + EY +L Y V+ +++ +P +G + E +
Sbjct: 1 MKITVVAVGKLKERFWADACAEYAKRLSAYATVKMVEIADRDPAKSGGEETGRALEGKGI 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I VV+LD G + SE++A + D G S I+F IGG G P++R RA+
Sbjct: 61 LAAIPERSHVVLLDIGGKERSSEEIASHLDDLMLRGESSITFVIGGSCGVSPEVRSRADE 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + L H +A +VL+EQ+YR++ I++G+ YH
Sbjct: 121 RLSFGRITLPHNLARVVLLEQVYRAFKIMRGEPYH 155
>gi|433656260|ref|YP_007299968.1| rRNA large subunit m3Psi methyltransferase RlmH
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433294449|gb|AGB20271.1| rRNA large subunit m3Psi methyltransferase RlmH
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK--AQIKDED 131
+ I +I VGK + ++ + EY+ +LK YC + +++ P++ D + + ++ E
Sbjct: 1 MNIDIIAVGKIKEKFIEDGIREYVKRLKPYCNINIIEVNDEKAPESLSDREKISVMQRES 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ +++ I +++ L G + S + A + D + G S I+F IGG G ++
Sbjct: 61 VKIVDKIRKGSFIISLCIEGRQMDSVEFARYIEDVMTAGNSNITFVIGGSLGLHNDIKSM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ + S M HQ+ L+L+EQ+YR++ I+KG+ YH
Sbjct: 121 SDLKLSFSKMTFPHQLMRLILIEQIYRAFKIMKGEPYH 158
>gi|121594262|ref|YP_986158.1| rRNA large subunit methyltransferase [Acidovorax sp. JS42]
gi|166980503|sp|A1W757.1|RLMH_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|120606342|gb|ABM42082.1| protein of unknown function DUF163 [Acidovorax sp. JS42]
Length = 155
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV+LDE G + ++ +A+ + D G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVVLDERGTGLTTKALAQRLKD-WQLGGDDVALVIGGPDGLDPAFRQAAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|406667857|ref|ZP_11075608.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
isronensis B3W22]
gi|405384264|gb|EKB43712.1| Ribosomal RNA large subunit methyltransferase H [Bacillus
isronensis B3W22]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I+VGK + +++ ++EY+ +L Y K++ +++ P+ D +I + E
Sbjct: 3 ITIISVGKLKEKYLKMGIEEYVKRLGGYAKIDLVEVPDEKAPEQLSDADMEIVKRKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I+ +V+ L +G SE+MA + + G S+++F IGG G + +RA+
Sbjct: 63 ILAKINDGTYVIALALDGKMKTSEEMAADLEALMTYGKSKVAFIIGGSLGLHTDVLQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ M L HQ+ LVLVEQ+YRS+ I+KG+ YH
Sbjct: 123 EKLCFGKMTLPHQLMKLVLVEQIYRSFRIIKGEPYH 158
>gi|339634620|ref|YP_004726261.1| rRNA large subunit methyltransferase [Weissella koreensis KACC
15510]
gi|420162255|ref|ZP_14669015.1| SPOUT methyltransferase superfamily protein [Weissella koreensis
KCTC 3621]
gi|338854416|gb|AEJ23582.1| rRNA large subunit methyltransferase [Weissella koreensis KACC
15510]
gi|394744689|gb|EJF33631.1| SPOUT methyltransferase superfamily protein [Weissella koreensis
KCTC 3621]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EY +L + K ++Q P+ + + Q + E
Sbjct: 1 MNIKIITVGKLKEQFLKDGIAEYAKRLSKFAKFNIIEVQDEKAPEQLSETQMQQVMAKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++V +L G + SE +A + TG S I+F IGG G P + +R
Sbjct: 61 ERILSKIKDKEYVFVLAIKGKERTSEALAHEIDQLAVTGHSDITFVIGGSLGTDPSVNQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN I L HQ+ LVL EQ+YRS+ I G YH
Sbjct: 121 ANTLISFGKFTLPHQLMRLVLTEQIYRSFMINIGSPYH 158
>gi|357639253|ref|ZP_09137126.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
urinalis 2285-97]
gi|418416933|ref|ZP_12990131.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
urinalis FB127-CNA-2]
gi|357587707|gb|EHJ57115.1| rRNA large subunit m3Psi methyltransferase RlmH [Streptococcus
urinalis 2285-97]
gi|410872989|gb|EKS20925.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
urinalis FB127-CNA-2]
Length = 159
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ I++I VGK + ++ + EY +L + K E ++L P N KA + E
Sbjct: 1 MKIKLIAVGKLKEKYLKEGIAEYQKRLSRFTKTEIIELPDEKTPDNASQAENKAILNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ IS ++V+ L G SE ++ + G S I+F IGG G P++++R
Sbjct: 61 NRILSKISEREFVIALAIEGTQFPSEVFSQKIETITLNGYSDITFIIGGSLGLSPEVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 AQFLMSFGQLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>gi|253752819|ref|YP_003025960.1| rRNA large subunit methyltransferase [Streptococcus suis SC84]
gi|251817108|emb|CAZ52760.1| conserved hypothetical protein [Streptococcus suis SC84]
Length = 159
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I++ITVGK + ++ + EY +L + K++ ++L P + + +K E
Sbjct: 1 MKIKLITVGKLKEKYLKEGIAEYSKRLGRFTKLDMIELPDEKTPDKASQAENEQILKKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M+ I D+V+ L G SE+ ++ + D G S I+F IGG G +++R
Sbjct: 61 DRIMSKIGERDFVIALAIEGKQFPSEEFSQRISDIAVNGYSDITFIIGGSLGLDSCIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LV +EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGQLTLPHQLMKLVFIEQIYRAFMIQQGSPYH 158
>gi|46906535|ref|YP_012924.1| rRNA large subunit methyltransferase [Listeria monocytogenes
serotype 4b str. F2365]
gi|47096382|ref|ZP_00233977.1| conserved hypothetical protein TIGR00246 [Listeria monocytogenes
str. 1/2a F6854]
gi|226222929|ref|YP_002757036.1| hypothetical protein Lm4b_00321 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825654|ref|ZP_05230655.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL J1-194]
gi|254828753|ref|ZP_05233440.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL N3-165]
gi|254853433|ref|ZP_05242781.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL R2-503]
gi|254913531|ref|ZP_05263543.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254932521|ref|ZP_05265880.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
HPB2262]
gi|254937888|ref|ZP_05269585.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
F6900]
gi|255027224|ref|ZP_05299210.1| rRNA large subunit methyltransferase [Listeria monocytogenes FSL
J2-003]
gi|255520933|ref|ZP_05388170.1| rRNA large subunit methyltransferase [Listeria monocytogenes FSL
J1-175]
gi|290892555|ref|ZP_06555548.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL J2-071]
gi|300764574|ref|ZP_07074566.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|386045939|ref|YP_005964271.1| hypothetical protein [Listeria monocytogenes J0161]
gi|386049222|ref|YP_005967213.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386731065|ref|YP_006204561.1| rRNA large subunit methyltransferase [Listeria monocytogenes
07PF0776]
gi|404279852|ref|YP_006680750.1| hypothetical protein LMOSLCC2755_0300 [Listeria monocytogenes
SLCC2755]
gi|404282725|ref|YP_006683622.1| hypothetical protein LMOSLCC2372_0295 [Listeria monocytogenes
SLCC2372]
gi|404285668|ref|YP_006692254.1| hypothetical protein LMOSLCC2482_0301 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|404406754|ref|YP_006689469.1| hypothetical protein LMOSLCC2376_0271 [Listeria monocytogenes
SLCC2376]
gi|404412392|ref|YP_006697979.1| hypothetical protein LMOSLCC7179_0286 [Listeria monocytogenes
SLCC7179]
gi|405748646|ref|YP_006672112.1| hypothetical protein LMOATCC19117_0311 [Listeria monocytogenes ATCC
19117]
gi|405751519|ref|YP_006674984.1| hypothetical protein LMOSLCC2378_0315 [Listeria monocytogenes
SLCC2378]
gi|405754387|ref|YP_006677851.1| hypothetical protein LMOSLCC2540_0308 [Listeria monocytogenes
SLCC2540]
gi|405757281|ref|YP_006686557.1| hypothetical protein LMOSLCC2479_0294 [Listeria monocytogenes
SLCC2479]
gi|406703075|ref|YP_006753429.1| hypothetical protein LMOL312_0300 [Listeria monocytogenes L312]
gi|417316596|ref|ZP_12103240.1| rRNA large subunit methyltransferase [Listeria monocytogenes
J1-220]
gi|424713167|ref|YP_007013882.1| Ribosomal RNA large subunit methyltransferase H [Listeria
monocytogenes serotype 4b str. LL195]
gi|424822032|ref|ZP_18247045.1| Ribosomal RNA large subunit methyltransferase H [Listeria
monocytogenes str. Scott A]
gi|60390837|sp|Q724B0.1|RLMH_LISMF RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|259491716|sp|C1KZ18.1|RLMH_LISMC RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|46879800|gb|AAT03101.1| conserved hypothetical protein TIGR00246 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47015256|gb|EAL06194.1| conserved hypothetical protein TIGR00246 [Listeria monocytogenes
str. 1/2a F6854]
gi|225875391|emb|CAS04088.1| Unknown [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258601161|gb|EEW14486.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL N3-165]
gi|258606803|gb|EEW19411.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL R2-503]
gi|258610495|gb|EEW23103.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
F6900]
gi|290557864|gb|EFD91385.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL J2-071]
gi|293584076|gb|EFF96108.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
HPB2262]
gi|293591542|gb|EFF99876.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293594899|gb|EFG02660.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL J1-194]
gi|300514681|gb|EFK41736.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328476131|gb|EGF46840.1| rRNA large subunit methyltransferase [Listeria monocytogenes
J1-220]
gi|332310712|gb|EGJ23807.1| Ribosomal RNA large subunit methyltransferase H [Listeria
monocytogenes str. Scott A]
gi|345532930|gb|AEO02371.1| hypothetical protein LMOG_02531 [Listeria monocytogenes J0161]
gi|346423068|gb|AEO24593.1| UPF0247 protein [Listeria monocytogenes FSL R2-561]
gi|384389823|gb|AFH78893.1| rRNA large subunit methyltransferase [Listeria monocytogenes
07PF0776]
gi|404217846|emb|CBY69210.1| hypothetical protein LMOATCC19117_0311 [Listeria monocytogenes ATCC
19117]
gi|404220719|emb|CBY72082.1| hypothetical protein LMOSLCC2378_0315 [Listeria monocytogenes
SLCC2378]
gi|404223587|emb|CBY74949.1| hypothetical protein LMOSLCC2540_0308 [Listeria monocytogenes
SLCC2540]
gi|404226487|emb|CBY47892.1| hypothetical protein LMOSLCC2755_0300 [Listeria monocytogenes
SLCC2755]
gi|404232227|emb|CBY53630.1| hypothetical protein LMOSLCC2372_0295 [Listeria monocytogenes
SLCC2372]
gi|404235163|emb|CBY56565.1| hypothetical protein LMOSLCC2479_0294 [Listeria monocytogenes
SLCC2479]
gi|404238091|emb|CBY59492.1| hypothetical protein LMOSLCC7179_0286 [Listeria monocytogenes
SLCC7179]
gi|404240903|emb|CBY62303.1| hypothetical protein LMOSLCC2376_0271 [Listeria monocytogenes
SLCC2376]
gi|404244597|emb|CBY02822.1| hypothetical protein LMOSLCC2482_0301 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406360105|emb|CBY66378.1| hypothetical protein LMOL312_0300 [Listeria monocytogenes L312]
gi|424012351|emb|CCO62891.1| Ribosomal RNA large subunit methyltransferase H [Listeria
monocytogenes serotype 4b str. LL195]
Length = 159
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|386363652|ref|YP_006072983.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
pyogenes Alab49]
gi|350278061|gb|AEQ25429.1| ribosomal RNA large subunit methyltransferase H [Streptococcus
pyogenes Alab49]
Length = 159
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNT-GDVKAQIKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L R+ K + D + + E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERTPDKASFADNQLIMSKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE +EL+ G S I+F IGG G +++R
Sbjct: 61 QRIHKKIGERDFVIALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I KG YH
Sbjct: 121 ANMLMSFGLLTLPHQLMRLVLIEQIYRAFMITKGSPYH 158
>gi|420178286|ref|ZP_14684618.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM057]
gi|420180907|ref|ZP_14687116.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM053]
gi|394246476|gb|EJD91732.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM057]
gi|394248386|gb|EJD93624.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM053]
Length = 159
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L+ Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLRPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|395009139|ref|ZP_10392706.1| hypothetical protein PMI14_05504 [Acidovorax sp. CF316]
gi|407939257|ref|YP_006854898.1| rRNA large subunit methyltransferase [Acidovorax sp. KKS102]
gi|394312824|gb|EJE49934.1| hypothetical protein PMI14_05504 [Acidovorax sp. CF316]
gi|407897051|gb|AFU46260.1| rRNA large subunit methyltransferase [Acidovorax sp. KKS102]
Length = 155
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV LDE G ++ ++ +AE + G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVALDERGTNLTTKALAERL-KGWQLGGDDVALVIGGPDGLDPAFRQAAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|418960449|ref|ZP_13512337.1| rRNA large subunit methyltransferase [Lactobacillus salivarius
SMXD51]
gi|380345125|gb|EIA33470.1| rRNA large subunit methyltransferase [Lactobacillus salivarius
SMXD51]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-------RSNPKNTGDVKAQIKDE 130
I++I VGK + ++ + EY +L +CK + +++ + +P VK + E
Sbjct: 3 IKIIGVGKLKEKYLKQGIAEYAKRLGTFCKFQIVEVPDEKAPEKLSPAEMEGVKEK---E 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I ++V L G + SE+ A+ + D G G S I+F IGG G P++ +
Sbjct: 60 GERILAKIKDKEYVYALAIEGKERSSEEFAKELADLGIYGTSDITFVIGGSLGLSPEVLK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN I L HQ+ +VL EQ+YR + I G+ YH
Sbjct: 120 RANTKISFGRFTLPHQLMRMVLTEQIYRGFMINAGRPYH 158
>gi|257868738|ref|ZP_05648391.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|357049635|ref|ZP_09110854.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
saccharolyticus 30_1]
gi|257802902|gb|EEV31724.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|355383100|gb|EHG30187.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
saccharolyticus 30_1]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I+++TVGK + + ++EY+ +L YCK++ +++ P++ + + Q+K+ E
Sbjct: 3 IKIVTVGKLKEKYLIQGINEYVKRLGAYCKIQFVEVPDEKAPESMSEAEMLQVKEKEGKK 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE A+ + G G S++ F IGG G ++ +R+N
Sbjct: 63 ILAKIKDQEYVFALAIEGKNPTSEAFAQQIEQLGIQGKSQLVFVIGGSLGLSQEVMQRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I M HQ+ L+LVEQ+YR++ I G YH
Sbjct: 123 TQISFGKMTYPHQLMKLILVEQIYRAFRINTGAPYH 158
>gi|297585562|ref|YP_003701342.1| hypothetical protein [Bacillus selenitireducens MLS10]
gi|297144019|gb|ADI00777.1| protein of unknown function DUF163 [Bacillus selenitireducens
MLS10]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK----NTGDVKAQIKDED 131
+ I VI+VGK + ++L + E+ +L YCK++ +++ + D++ + E
Sbjct: 1 MQITVISVGKIKDKYLKLGIAEFEKRLGRYCKLQQIEINDEQAPDHLSEKDIELIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I +D V +LD G SE A + G S+I+F IGG G + +R
Sbjct: 61 NKILQKIKTDQTVFVLDIQGKQRTSEAFAAELDHLVLHGKSQIAFVIGGSNGLSQDVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ I S M HQ+ L+L+EQ+YR++ I KG+ YH
Sbjct: 121 ADEKISFSKMTFPHQLMKLILLEQIYRAFKIQKGEPYH 158
>gi|148269228|ref|YP_001243688.1| hypothetical protein Tpet_0083 [Thermotoga petrophila RKU-1]
gi|170287890|ref|YP_001738128.1| hypothetical protein TRQ2_0083 [Thermotoga sp. RQ2]
gi|166919110|sp|A5IIT9.1|RLMH_THEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|238688865|sp|B1LCI7.1|RLMH_THESQ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|147734772|gb|ABQ46112.1| protein of unknown function DUF163 [Thermotoga petrophila RKU-1]
gi|170175393|gb|ACB08445.1| protein of unknown function DUF163 [Thermotoga sp. RQ2]
Length = 151
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R+ VGK ++ + Y L+ +CK+E L+++ + + + + + ED+A
Sbjct: 1 MKVRIAVVGKLDGF-IKEGIKHYEKFLRRFCKLEVLEIKRVHRGSIEEIVRKETEDLA-- 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
N I +V+++D G ++ SE+ A+ + D G I+ IGGP+G ++ +A+
Sbjct: 58 NRILLGSFVMVMDRRGEEVSSEEFADFLKDLEMKGKD-ITILIGGPHGLNEEIFAKAHRV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H + +L+++EQ++R++ I+ G+NYH+
Sbjct: 117 FSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHY 151
>gi|16799398|ref|NP_469666.1| rRNA large subunit methyltransferase [Listeria innocua Clip11262]
gi|423099360|ref|ZP_17087067.1| rRNA large subunit m3Psi methyltransferase RlmH [Listeria innocua
ATCC 33091]
gi|32171886|sp|Q92EY7.1|RLMH_LISIN RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|16412750|emb|CAC95554.1| lin0321 [Listeria innocua Clip11262]
gi|370794258|gb|EHN62040.1| rRNA large subunit m3Psi methyltransferase RlmH [Listeria innocua
ATCC 33091]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD E +
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVSIVEVPDEKAPEVLSDAEMKQVKDKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVAFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EQISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|284800592|ref|YP_003412457.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
08-5578]
gi|284993778|ref|YP_003415546.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
08-5923]
gi|284056154|gb|ADB67095.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
08-5578]
gi|284059245|gb|ADB70184.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
08-5923]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGEMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|406900434|gb|EKD43393.1| Ribosomal RNA large subunit methyltransferase H [uncultured
bacterium]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ-IKDEDMAV 134
+ +++I +GK + + EY+ +L+ + KVE ++L+ + G + A+ IK ++
Sbjct: 2 IRVKIICLGKLKEKYWREAEQEYLKRLQAFAKVEMIELKEESFD-GKIPAEVIKQKEADK 60
Query: 135 MNIIS---SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+N + D +V++LDE+G S +E + + + G F IGGP G G + ++
Sbjct: 61 INSVLGKIKDAYVIVLDEHGKQFSSVIFSEHLFELANRGNGEFVFVIGGPLGLGELILKK 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
AN+ + SS HQ+ + L+EQ+YRS I G+ YH+
Sbjct: 121 ANLKLSFSSFTFTHQMIRVFLLEQIYRSAMIEGGRQYHY 159
>gi|418055112|ref|ZP_12693167.1| Ribosomal RNA large subunit methyltransferase H [Hyphomicrobium
denitrificans 1NES1]
gi|353210694|gb|EHB76095.1| Ribosomal RNA large subunit methyltransferase H [Hyphomicrobium
denitrificans 1NES1]
Length = 160
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL---QLRS-NPKNTGDVKAQIKDEDMA 133
I ++ VGK + + + D Y+ + + L ++R N + DE
Sbjct: 3 ISLLAVGKLKDAEERAISDRYVKRFNGAGRAIGLGPIEVRELNESRAASADERKCDEAAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+M +++D ++V LD G I SE A L+ + +F IGGP GHG +
Sbjct: 63 LMKDLAADTFIVALDPAGRSISSESFARLLSEKRDGAVKACAFLIGGPDGHGAQALRPPA 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ + L ++ L H +A +VL+EQLYR+ TIL G YH
Sbjct: 123 MKLSLGALTLPHGLARVVLLEQLYRAATILSGHPYHR 159
>gi|422408347|ref|ZP_16485308.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL F2-208]
gi|313611019|gb|EFR85918.1| SPOUT methyltransferase superfamily protein [Listeria monocytogenes
FSL F2-208]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD E +
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVAFVIGGSLGLSEAVLQRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|288959176|ref|YP_003449517.1| hypothetical protein AZL_023350 [Azospirillum sp. B510]
gi|288911484|dbj|BAI72973.1| hypothetical protein AZL_023350 [Azospirillum sp. B510]
Length = 152
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
+ VG+ R + + DEY+G+L + +++++++ ++ ++K Q E ++ +
Sbjct: 5 LAAVGRSRGGPTRDLFDEYVGRLVWPFALKEVEVKKR-LSSDELKRQ---EAELLLAAVP 60
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
S +V LDE G + SE A +GD GA ++F IGG GHG +R RA+ +
Sbjct: 61 SGAVIVALDERGKALPSESFAAKIGDWRDRGAGDLAFLIGGADGHGDAVRARADFLLAFG 120
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
M H + +L EQLYR+ IL G YH
Sbjct: 121 PMTWPHMLVRGMLAEQLYRAQQILAGHPYHR 151
>gi|398814775|ref|ZP_10573453.1| rRNA large subunit m3Psi methyltransferase RlmH [Brevibacillus sp.
BC25]
gi|398035863|gb|EJL29089.1| rRNA large subunit m3Psi methyltransferase RlmH [Brevibacillus sp.
BC25]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PK--NTGDVKAQIKDED 131
+ I +ITVGK + ++ +DEY +L YCK++ +++ P+ + +++ + E
Sbjct: 1 MQISIITVGKLKEKYLREGIDEYSKRLSAYCKLQVIEVNDEKAPEEMSAAEMEQVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L G SE+++ M G S+++F IGG G ++ +R
Sbjct: 61 ERILAQIKQDQYVIALAIGGQMWSSEKLSAEMDKLALHGRSQVAFVIGGSLGLADQVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 121 ADALLSFSKMTFPHQLVRLILLEQVYRAFRISRGEPYH 158
>gi|423335198|ref|ZP_17312976.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|337728719|emb|CCC03834.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 173
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
L I++I VGK + + + EY +L YCK E +++ +A++ DE M+
Sbjct: 15 LNIKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEM-DEVMSKE 73
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +
Sbjct: 74 GERILDKIKDREYVYALAIKGKERSSEEFAKEINKLTTYGHSDITFVIGGSLGLSPAVLK 133
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 134 RADAQISFGRFTLPHQLMRLVLSEQIYRAFTIINGLPYH 172
>gi|242243233|ref|ZP_04797678.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
gi|242233182|gb|EES35494.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
Length = 176
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 18 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 77
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I S V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 78 QRLLNKIKSQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 137
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 138 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 175
>gi|374292806|ref|YP_005039841.1| ribosomal RNA large subunit methyltransferase H [Azospirillum
lipoferum 4B]
gi|357424745|emb|CBS87624.1| Ribosomal RNA large subunit methyltransferase H [Azospirillum
lipoferum 4B]
Length = 152
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
+ VG+ R + + DEY+G+L + +++++++ ++ ++K Q E ++ +
Sbjct: 5 LAAVGRSRGGPTRDLFDEYVGRLGWPFTLKEVEVKKR-LSSDELKRQ---EAELLLAAVP 60
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
+ VV LDE G + SE A +GD GA ++F IGG GHG +R RA+ +
Sbjct: 61 AGAIVVALDERGKALPSESFAAKIGDWRDRGAGDLAFLIGGADGHGDAVRARADFLLAFG 120
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
M H + +L EQLYR+ IL G YH
Sbjct: 121 PMTWPHMLVRGMLAEQLYRAQQILAGHPYHR 151
>gi|417646264|ref|ZP_12296128.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU144]
gi|329728494|gb|EGG64930.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU144]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRTTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRSFKIMRGEAYH 158
>gi|329767456|ref|ZP_08258980.1| ribosomal RNA large subunit methyltransferase H [Gemella
haemolysans M341]
gi|328835904|gb|EGF85620.1| ribosomal RNA large subunit methyltransferase H [Gemella
haemolysans M341]
Length = 158
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKDEDM 132
+ + +I VGK + + + EY +L Y K+ +++ +N ++ ++ E
Sbjct: 1 MKVTLICVGKVKEKFYRDAIKEYEKRLGAYIKLYTIEISDEKVKVENDSEIALAMEKEGN 60
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ I + +V+ L+ G ++ SE+ A + + TG S ++ IGG YG +++R+
Sbjct: 61 NILSKIKDNQYVITLEILGKNLSSEEFASKIDNLMLTGKSDVALVIGGSYGLSDSVKKRS 120
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N ++ S M HQ+ +VL+EQ+YR++ I+ G +YH
Sbjct: 121 NFALSFSKMTFPHQMMRVVLLEQVYRAYRIITGASYH 157
>gi|347731577|ref|ZP_08864670.1| hypothetical protein DA2_0941 [Desulfovibrio sp. A2]
gi|347519625|gb|EGY26777.1| hypothetical protein DA2_0941 [Desulfovibrio sp. A2]
Length = 155
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+R++ VGK ++ Q Y+ +L++ +V + +R K + DE ++
Sbjct: 4 LRLLAVGKLKTPFWQQAAAHYLERLRHTWRVTETLVRDGDAALPPAK-RNADEGARLLAA 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D VV +DE G S + A L+ + F IGG YG ++ +RA + +
Sbjct: 63 LGPSDIVVCMDERGKAHTSPEFAALLARLTENATAAPCFVIGGAYGLDGEVLKRAALRVS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L M H++A +VL+EQLYR+ IL+G YHH
Sbjct: 123 LGPMTFPHEMARVVLLEQLYRADCILRGSPYHH 155
>gi|338730766|ref|YP_004660158.1| hypothetical protein Theth_0979 [Thermotoga thermarum DSM 5069]
gi|335365117|gb|AEH51062.1| protein of unknown function DUF163 [Thermotoga thermarum DSM 5069]
Length = 153
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ I++I VGK + + V EY+ L+ Y +++ +Q++ + + +++ +
Sbjct: 1 MKIKIIVVGKLKGFAT-VAVQEYLKMLQGYSRIQIVQVKGSTYLDSSCDEHLLNQEAEQV 59
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
DD+V++LDE G + S A+ + S + F IGGP+G +R+RA+
Sbjct: 60 MKHLKDDYVILLDERGKEYDSIGFAKHFEGLLALPKSLV-FVIGGPFGVSETLRKRADEM 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS + HQ+A++VL+EQL R++ I+ + YH+
Sbjct: 119 ISLSKLTFTHQLAVVVLLEQLLRAFKIINNEKYHY 153
>gi|417656817|ref|ZP_12306496.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU028]
gi|418664966|ref|ZP_13226426.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU081]
gi|329735745|gb|EGG72026.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU028]
gi|374409747|gb|EHQ80522.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU081]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIEIIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE++A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSERLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|239832927|ref|ZP_04681256.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|444309739|ref|ZP_21145370.1| rRNA large subunit methyltransferase [Ochrobactrum intermedium M86]
gi|239825194|gb|EEQ96762.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|443486821|gb|ELT49592.1| rRNA large subunit methyltransferase [Ochrobactrum intermedium M86]
Length = 164
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKDEDM-- 132
+ V VG+ ++ + +V+ Y + L+ P++ G K E+
Sbjct: 3 VSVFAVGRMKTGPERELVERYFDRFSKAGPPLGLEFAGVSEIPESRGQTAELRKAEEAQR 62
Query: 133 ---AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
A+ N S +++LDE G +GSE A +G G ++ IGGP GH P +R
Sbjct: 63 IHDALDNASSGGAALILLDERGKALGSEAFAAAVGRMRDDGKRQLIVAIGGPDGHDPALR 122
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA++ + L + HQIA +++ EQLYR+ TIL G YH
Sbjct: 123 SRADLVLALGELTWPHQIARILIAEQLYRAATILAGHPYH 162
>gi|242281172|ref|YP_002993301.1| hypothetical protein Desal_3717 [Desulfovibrio salexigens DSM 2638]
gi|259491704|sp|C6BU53.1|RLMH_DESAD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|242124066|gb|ACS81762.1| protein of unknown function DUF163 [Desulfovibrio salexigens DSM
2638]
Length = 156
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
++ + VGK + + Y KL + K+++ L+ P + +++ E A+M
Sbjct: 4 LQFVWVGKLKEPFFRDACAHYTKKLGRFHKLDETILKDAPGKLPPMD-KVQHEGKAIMAR 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I D ++ LDE G ++ S ++++ + +F IGGP+G +++ A + +
Sbjct: 63 IKPSDMLICLDEKGKEMTSVELSKHLQRWTEDPNLTPTFVIGGPFGLADEVKNAARVKLS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M L H++A +L+EQLYR+ +IL+G YHH
Sbjct: 123 LSKMTLPHELARTMLLEQLYRAASILRGSPYHH 155
>gi|418604500|ref|ZP_13167847.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU041]
gi|418617351|ref|ZP_13180249.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU120]
gi|420193932|ref|ZP_14699762.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM021]
gi|420197613|ref|ZP_14703336.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM020]
gi|420207767|ref|ZP_14713253.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM008]
gi|420215391|ref|ZP_14720660.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH05005]
gi|420216509|ref|ZP_14721716.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH05001]
gi|420218929|ref|ZP_14723973.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH04008]
gi|420227752|ref|ZP_14732516.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH05003]
gi|420233050|ref|ZP_14737672.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH051668]
gi|420235708|ref|ZP_14740244.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH051475]
gi|374404723|gb|EHQ75691.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU041]
gi|374818644|gb|EHR82794.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU120]
gi|394265714|gb|EJE10365.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM020]
gi|394266815|gb|EJE11437.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM021]
gi|394275000|gb|EJE19392.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM008]
gi|394282367|gb|EJE26568.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH05005]
gi|394291333|gb|EJE35149.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH04008]
gi|394291770|gb|EJE35556.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH05001]
gi|394296603|gb|EJE40228.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH05003]
gi|394300610|gb|EJE44104.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH051668]
gi|394302377|gb|EJE45822.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH051475]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 SNYALSFSTMTFPHQMMRVILIEQIYRSFKIMRGEAYH 158
>gi|340624359|ref|YP_004742812.1| rRNA large subunit methyltransferase [Methanococcus maripaludis X1]
gi|339904627|gb|AEK20069.1| rRNA large subunit methyltransferase [Methanococcus maripaludis X1]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDEDMA 133
+ +I+VGK + + + EY ++ Y K++ +++ P+N DV+ ++ E
Sbjct: 3 VTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEAER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D +++ L+ G ++ SE +A+ + D +G I+F IGG G + E ++
Sbjct: 63 ILKYLKKDSFLITLEILGKELTSEDLAKKIKDLSISGKQNITFVIGGSLGLSKNISEISD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ ++L+EQ+YRS+ I+ G+ YH
Sbjct: 123 FKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYH 158
>gi|315280754|ref|ZP_07869563.1| SPOUT methyltransferase superfamily protein [Listeria marthii FSL
S4-120]
gi|386042632|ref|YP_005961437.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|404409530|ref|YP_006695118.1| hypothetical protein LMOSLCC5850_0291 [Listeria monocytogenes
SLCC5850]
gi|313615591|gb|EFR88927.1| SPOUT methyltransferase superfamily protein [Listeria marthii FSL
S4-120]
gi|345535866|gb|AEO05306.1| hypothetical protein LMRG_02578 [Listeria monocytogenes 10403S]
gi|404229356|emb|CBY50760.1| hypothetical protein LMOSLCC5850_0291 [Listeria monocytogenes
SLCC5850]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD E +
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|365155958|ref|ZP_09352299.1| ribosomal RNA large subunit methyltransferase H [Bacillus smithii
7_3_47FAA]
gi|363627814|gb|EHL78661.1| ribosomal RNA large subunit methyltransferase H [Bacillus smithii
7_3_47FAA]
Length = 159
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I ++TVGK + ++ ++EY+ +L Y KVE +++ P+ + + Q+K E
Sbjct: 3 ISIVTVGKLKEKYLKQGIEEYLKRLSAYAKVEIIEVADEKAPETLSESEMEQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D V+ L G SEQ + + + G S+I+F IGG G ++ +RA+
Sbjct: 63 ILAKLHPDTHVIALAIEGKMYTSEQFSAHIDQLTTYGKSKIAFIIGGSLGLSDQVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ S M HQ+ L+L+EQ+YR++ I++G+ YH
Sbjct: 123 ETLSFSKMTFPHQLMRLILLEQVYRAFRIMRGEPYH 158
>gi|253999881|ref|YP_003051944.1| rRNA large subunit methyltransferase [Methylovorus glucosetrophus
SIP3-4]
gi|253986560|gb|ACT51417.1| protein of unknown function DUF163 [Methylovorus glucosetrophus
SIP3-4]
Length = 155
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R+++VG K V+ EY+ ++ VE ++++ + + +G +++ + +
Sbjct: 1 MKLRILSVGHKMPDWVETACSEYLKRMPREASVEIVEIKPDKRASGKNAEVVQEAEAKRI 60
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ D+++ LDE G ++ + Q+A M + TG I+ IGG G P ++ RA+
Sbjct: 61 LEAAGKDYLIALDERGQEVTTVQLAARM-ETWLTGGRDIALVIGGADGLHPSVKSRADWM 119
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + ++L EQLYR+WT+++ YH
Sbjct: 120 WGLSKLTLPHGMVRVLLAEQLYRAWTVIQHHPYH 153
>gi|319779284|ref|YP_004130197.1| SPOUT methyltransferase superfamily protein [Taylorella
equigenitalis MCE9]
gi|397661523|ref|YP_006502223.1| ribosomal RNA large subunit methyltransferase H [Taylorella
equigenitalis ATCC 35865]
gi|317109308|gb|ADU92054.1| SPOUT methyltransferase superfamily protein [Taylorella
equigenitalis MCE9]
gi|394349702|gb|AFN35616.1| ribosomal RNA large subunit methyltransferase H [Taylorella
equigenitalis ATCC 35865]
gi|399114550|emb|CCG17344.1| ribosomal RNA large subunit methyltransferase H [Taylorella
equigenitalis 14/56]
Length = 156
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAVMN 136
+++I VG+K V EY +L ++ +++ P+ G AQ+ E + +
Sbjct: 3 LKIIAVGQKMPSWVDDAYSEYAKRLPPEIQITLHEVKPEPRTLGKTPAQMMSAEAKRIES 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I+S+ VV LDE+G ++ + ++E++ +S IGGP G + ++ +N I
Sbjct: 63 AIASNSHVVSLDEHGKNVTTVDLSEMLRK-WMIEKPEVSIIIGGPDGLDSEFKKSSNEQI 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+LSS+ L H + ++L+EQ+YR+W+IL YH
Sbjct: 122 RLSSLTLPHPMVRVLLIEQIYRAWSILNNHPYH 154
>gi|374340047|ref|YP_005096783.1| hypothetical protein Marpi_1073 [Marinitoga piezophila KA3]
gi|372101581|gb|AEX85485.1| hypothetical protein Marpi_1073 [Marinitoga piezophila KA3]
Length = 154
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-VMN 136
I+V +GK ++ ++ +++Y+ Y +VE + L + + K +DM ++
Sbjct: 2 IKVYVIGKPKTKFIKTGLEQYLKWTSKYDRVELITLPLSDDLNKISAEEYKKKDMERILK 61
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ D + V+LDE G ++ S A+ + D G ISF IGGP GH +R A+ +
Sbjct: 62 YFTGDVFKVVLDERGKELSSIDFAKKI-DTWRIGKKNISFFIGGPLGHHEYIRNNADFLL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+S M H++ LL L+EQ+YR++ I + YH+
Sbjct: 121 SMSKMTFTHEMILLFLLEQIYRAFKINNNEKYHY 154
>gi|351728673|ref|ZP_08946364.1| rRNA large subunit methyltransferase [Acidovorax radicis N35]
Length = 155
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV LDE G ++ ++ +AE + G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVALDERGTNLTTKALAERL-KGWQLGGDDVALVIGGPDGLDPAFRQGAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|374298331|ref|YP_005048522.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
clariflavum DSM 19732]
gi|359827825|gb|AEV70598.1| rRNA large subunit m3Psi methyltransferase RlmH [Clostridium
clariflavum DSM 19732]
Length = 159
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTG-DVKAQIKD-ED 131
+ I ++ VGK + ++ + EY +L +C+++ +++ P+N + Q+K E
Sbjct: 1 MKITIVAVGKLKGKYLKEGISEYSKRLSRFCELQIIEVEDEQAPENLSVSQEEQVKRREA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + +++LD G + SE+ ++ + +G S I+F IGG G ++ +
Sbjct: 61 ERIIKRVKEGSVLIVLDLKGKKLSSEEFSDKLNSFFISGKSHITFVIGGSLGLDEELVRK 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S+ LS M HQ+A L+LVEQ++R++ IL + YH
Sbjct: 121 ADFSLSLSDMTFPHQLARLILVEQIFRAFKILNNETYH 158
>gi|299143358|ref|ZP_07036438.1| alpha/beta knot family protein [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298517843|gb|EFI41582.1| alpha/beta knot family protein [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 159
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDLQLRSNPKNTGDVK-AQIKDEDM 132
+ I +I VG+ R ++ +DE+ +L + K+ ++ S P+ D + QIK+++
Sbjct: 1 MNINIIAVGRVREKYIRDGIDEFKKRLSAHAVVKIVEVSDESAPEKLSDNEIKQIKEKEA 60
Query: 133 A-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D+V+ L+ G + SE+ A+ + +G S I F IGG G + +R
Sbjct: 61 ERILKNIRETDYVITLEIKGEKVSSEKFADKLQKIQLSGNSTIDFIIGGSLGLAENISKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ L+L+EQ+YR++ I G YH
Sbjct: 121 ANYKLSFSDMTFPHQLMRLILLEQIYRAFRIANGFPYH 158
>gi|422414752|ref|ZP_16491709.1| SPOUT methyltransferase superfamily protein [Listeria innocua FSL
J1-023]
gi|313625259|gb|EFR95092.1| SPOUT methyltransferase superfamily protein [Listeria innocua FSL
J1-023]
Length = 159
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD E +
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVSIVEVPDEKAPEVLSDAEMKQVKDKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVAFVIGGSLGLSDAVLRRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EQISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|422411678|ref|ZP_16488637.1| SPOUT methyltransferase superfamily protein [Listeria innocua FSL
S4-378]
gi|313620796|gb|EFR92033.1| SPOUT methyltransferase superfamily protein [Listeria innocua FSL
S4-378]
Length = 159
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVSIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVAFVIGGSLGLSDAVLKRGN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EQISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|83591232|ref|YP_431241.1| hypothetical protein Moth_2416 [Moorella thermoacetica ATCC 39073]
gi|118574550|sp|Q2RFU1.1|RLMH_MOOTA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|83574146|gb|ABC20698.1| Protein of unknown function DUF163 [Moorella thermoacetica ATCC
39073]
Length = 160
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQ-----LRSNPKNTGDVKAQIKDE 130
L + ++ VG+ R + ++EY+ +L+ Y +V L+ + P G V+ + E
Sbjct: 2 LHLTIVAVGRVREKYLVAGIEEYLKRLRPYARVRILEAPEEKVPDKPSPAG-VEQILASE 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+ +I + V LD G+ + SE++A + D G + ++ IGG G + +
Sbjct: 61 GRGIGRLIPPSSFTVALDREGVMLSSEELAGRLADLALAGKNEVALIIGGTLGLATFILQ 120
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+A++ + S HQ+ L+L+EQLYR++ I +G+ YH
Sbjct: 121 QADLRLSFSRFTFPHQLMRLILLEQLYRAFKIQRGETYHR 160
>gi|217965608|ref|YP_002351286.1| rRNA large subunit methyltransferase [Listeria monocytogenes HCC23]
gi|386007031|ref|YP_005925309.1| hypothetical protein lmo4a_0318 [Listeria monocytogenes L99]
gi|386025616|ref|YP_005946392.1| hypothetical protein LMM7_0328 [Listeria monocytogenes M7]
gi|254807121|sp|B8DEV0.1|RLMH_LISMH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|217334878|gb|ACK40672.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|307569841|emb|CAR83020.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|336022197|gb|AEH91334.1| hypothetical protein LMM7_0328 [Listeria monocytogenes M7]
Length = 159
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLGAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|206895382|ref|YP_002247574.1| hypothetical protein COPRO5265_1272 [Coprothermobacter
proteolyticus DSM 5265]
gi|238056568|sp|B5Y9X7.1|RLMH_COPPD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|206737999|gb|ACI17077.1| conserved hypothetical protein TIGR00246 [Coprothermobacter
proteolyticus DSM 5265]
Length = 139
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR-SNPKNTGDVKAQIKDEDMAV 134
+ + ++ VGK ++ V V +Y ++K+Y + ++ + NP
Sbjct: 1 MKVHIVAVGKLKNGYVAEGVKDYYERIKHYIPITMVETKQENP----------------- 43
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
N+ + + + ++LD G + SE+ A + D +T ++ + F IGGP G + A +
Sbjct: 44 FNMTTKEGFHIVLDAQGKLMTSEEFASFIEDLLTTQSNDVYFYIGGPEGFSEAFKNNAQM 103
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I LS M H++A L +EQLYR+ TI+KG+ YH
Sbjct: 104 RISLSLMTFPHELARLFFLEQLYRALTIIKGEKYH 138
>gi|424776318|ref|ZP_18203300.1| rRNA large subunit methyltransferase [Alcaligenes sp. HPC1271]
gi|422888416|gb|EKU30804.1| rRNA large subunit methyltransferase [Alcaligenes sp. HPC1271]
Length = 156
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
VI VG++ V+ EY ++ C +E ++++ P+ +G AQ+ + E + I
Sbjct: 5 VIAVGQRMPDWVEQGWQEYARRMPQDCAIELREIKAEPRTSGKTPAQMMQAEAKRIEAAI 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ + LDE G D+ + ++A+ + S+G I+ +GGP G +++ + ++L
Sbjct: 65 PAQAMRIALDERGKDLTTVKLAQELERWRSSGQD-IAILVGGPDGLDAALKQSCHGMLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SS+ L H + + L EQLYR+W+++ G YH
Sbjct: 124 SSLTLPHPLVRIFLAEQLYRAWSVMTGHPYHR 155
>gi|374711192|ref|ZP_09715626.1| RlmH, partial [Sporolactobacillus inulinus CASD]
Length = 158
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I ++TVGK + +L ++EY +L Y KV +++ P+N + + Q+K E
Sbjct: 3 ISLLTVGKLKEKYFKLGIEEYAKRLGAYAKVRIIEVPDEKAPENLSEAEVTQVKQAEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + + + + L G + SE A + D + G S I+F IGG G + +RA+
Sbjct: 63 LLKKLPENAYAIALAIKGKQMPSEDFASKIQDLATYGHSDIAFIIGGSNGLSNDVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S HQ+ L+L+EQ+YR++ I++G+ YH
Sbjct: 123 FQLSFSQFTFPHQLMRLILIEQIYRAFKIMRGEPYH 158
>gi|150392425|ref|YP_001322474.1| rRNA large subunit methyltransferase [Alkaliphilus metalliredigens
QYMF]
gi|167012974|sp|A6TX97.1|RLMH_ALKMQ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|149952287|gb|ABR50815.1| protein of unknown function DUF163 [Alkaliphilus metalliredigens
QYMF]
Length = 159
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKA-QIKD-EDMA 133
I VI+VGK + ++ + EY +L YCK+ +++ P+N + + IKD E A
Sbjct: 3 ITVISVGKLKEKYLKQGIAEYDKRLSRYCKLNFIEVADEKAPENLSEAEEIMIKDKEGEA 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +V+ LD G + SE ++E + G S I+F IGG G + +RA+
Sbjct: 63 ILKSIKDGMFVIALDLAGKMLSSEALSEKIDKLALQGNSHITFVIGGSLGLSQGVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR++ I K + YH
Sbjct: 123 FKLCFSPMTFPHQLMKLILLEQVYRAFRISKNEPYH 158
>gi|372271511|ref|ZP_09507559.1| ribosomal RNA large subunit methyltransferase H [Marinobacterium
stanieri S30]
Length = 155
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMN 136
IR++ VG + V DEY +L ++E ++L + D+ I+ E A++
Sbjct: 3 IRLLAVGNRMPDWVTAGYDEYARRLPADFQLELIELAPGHRGKNADLARAIRSEGDAMLA 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ D VV LD G +EQ+AE + G + IS +GGP G P+ A+
Sbjct: 63 AVGKGDRVVALDVKGRPWSTEQLAEQAENWRMDGRN-ISLLVGGPDGLDPRCLALADQKW 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS++ L H + +VL EQLYR+W+IL+G YH
Sbjct: 122 SLSALTLPHPLVRVVLAEQLYRAWSILQGHPYH 154
>gi|37520906|ref|NP_924283.1| hypothetical protein gll1337 [Gloeobacter violaceus PCC 7421]
gi|61217598|sp|Q7NKY9.1|RLMH_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|35211901|dbj|BAC89278.1| gll1337 [Gloeobacter violaceus PCC 7421]
Length = 151
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I+++ VG+ R + EY +L Y ++E +++R D +A + E A+++
Sbjct: 3 IKLVAVGRLREEAYERACAEYARRLAAYARLELVEVRD--ARIADSRAGLLKEGQALLDQ 60
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ + V+LD G S ++A+ + + F +G +G P +RERA +
Sbjct: 61 LHPGEHAVLLDSGGKQFTSVELADWLEN---HTVQEPVFIVGSSHGVAPMVRERAQMVWS 117
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + H++A ++++EQLYR+ TIL G YHH
Sbjct: 118 LSKLTFPHELARVIVLEQLYRAVTILAGHPYHH 150
>gi|417909235|ref|ZP_12552974.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU037]
gi|341653826|gb|EGS77592.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU037]
Length = 159
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITIVSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G++YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGESYH 158
>gi|332284813|ref|YP_004416724.1| hypothetical protein PT7_1560 [Pusillimonas sp. T7-7]
gi|330428766|gb|AEC20100.1| hypothetical protein PT7_1560 [Pusillimonas sp. T7-7]
Length = 156
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
V+ VG + V+ +Y +L C +E +++ P+ +G AQ+ + E + I
Sbjct: 5 VVAVGLRMPEWVETAWYDYAKRLPSDCSLELKEIKPEPRTSGKTPAQMMQAEARRIEAAI 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ ++ LDE G DI + ++ + G + F +GGP G P +++ + ++L
Sbjct: 65 PAHALLIALDERGKDISTMGLSAELEKWRGEGHD-VVFLVGGPDGLDPALKQSCHGKLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
SS+ L H + +VL EQLYR+W I+ G YH
Sbjct: 124 SSLTLPHPMVRVVLAEQLYRAWAIMTGHPYH 154
>gi|378549513|ref|ZP_09824729.1| hypothetical protein CCH26_05480 [Citricoccus sp. CH26A]
Length = 152
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R++TVGKK V +D Y +LK K DL + P ++ + A +E ++
Sbjct: 1 MSVRILTVGKKHESWVSEGIDRYSKRLK---KPFDLSWQLLPHSSREGDAARAEESARIL 57
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ D +++LDE G S +A + G +++ IGG YG + ERA+
Sbjct: 58 AKVDGRDHLMLLDERGRGFDSPGLARHLQGRFDLG-QQVTLVIGGAYGVDASVHERADTV 116
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS +V HQ+ L+L EQLYR+ I G+ YHH
Sbjct: 117 WSLSKLVFPHQLVRLILAEQLYRAQEITGGRPYHH 151
>gi|319893716|ref|YP_004150591.1| 50S m3Psi1915 methyltransferase RlmH [Staphylococcus
pseudintermedius HKU10-03]
gi|317163412|gb|ADV06955.1| LSU m3Psi1915 methyltransferase RlmH [Staphylococcus
pseudintermedius HKU10-03]
Length = 159
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ I ++ VGK + +L + EY +L Y K+E +++ ++ + Q+K+ E
Sbjct: 1 MKITILAVGKLKEKYWKLAIAEYTKRLGAYTKIEVVEVPDEKAPETMSAKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I V+ L+ G + SE +A+ + + GAS +F IGG +G + R
Sbjct: 61 QRILSKIKPQSTVITLEIAGKMLSSEDLAKTLDQRMTQGASDFTFVIGGSHGLHEAVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNFALSFSKMTFPHQMMRVILLEQVYRAFKIMRGEAYH 158
>gi|398827748|ref|ZP_10585951.1| hypothetical protein PMI41_00748 [Phyllobacterium sp. YR531]
gi|398219046|gb|EJN05543.1| hypothetical protein PMI41_00748 [Phyllobacterium sp. YR531]
Length = 160
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS------NPKNTGDVKAQIKDED 131
I V VG+ +S + + D Y +LK L+ S + D++ Q +E
Sbjct: 3 ISVFAVGRMKSGPERELADRYFDRLKKTGVPLGLEFSSVTEIVESRAQQPDLRKQ--EES 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
V+ + S +V+LDE G + SE A + G ++ IGGP GH +RER
Sbjct: 61 AQVLKALDSGGVLVLLDERGKTMPSEAFASSIERFRDDGKRQLLLAIGGPDGHDAALRER 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A++ + L +M HQI +++ EQLYR+ TIL G YH
Sbjct: 121 ADLVLALGAMTWPHQIVRILVAEQLYRATTILSGHPYHR 159
>gi|293400285|ref|ZP_06644431.1| alpha/beta knot family protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373453345|ref|ZP_09545240.1| rRNA large subunit m3Psi methyltransferase RlmH [Eubacterium sp.
3_1_31]
gi|291306685|gb|EFE47928.1| alpha/beta knot family protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371963888|gb|EHO81429.1| rRNA large subunit m3Psi methyltransferase RlmH [Eubacterium sp.
3_1_31]
Length = 158
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ---IKD-EDMA 133
I++I VGK + V+ + EY +L+ + K+E +++ + +AQ +K+ E
Sbjct: 2 IKIIAVGKIKEKFVKAQIAEYEKRLRPFTKLEIIEVNDEIAPQANSEAQNALVKEKEGER 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V++LD G I SE +A+ + + +S I+F I G G G K+ +RAN
Sbjct: 62 LLAKIKDQEYVILLDLWGEMINSETLADKIEKLQTYQSSNITFVIAGSLGPGKKVIDRAN 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
KLS + HQ+ ++++EQLYR++ IL YH
Sbjct: 122 WRWKLSDLTFTHQMTRVLVLEQLYRAYMILHHNPYH 157
>gi|319651056|ref|ZP_08005190.1| hypothetical protein HMPREF1013_01800 [Bacillus sp. 2_A_57_CT2]
gi|317397226|gb|EFV77930.1| hypothetical protein HMPREF1013_01800 [Bacillus sp. 2_A_57_CT2]
Length = 159
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I +ITVGK + ++ +DEY+ +L Y K++ +++ P+ + + Q+K E
Sbjct: 3 ISIITVGKLKEKYLKQGIDEYLKRLSAYAKMDIIEVPDEKAPEELSETEMIQVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L G SE++A+ + + G S+I+F IGG G ++ +RA+
Sbjct: 63 ILAKIHPDAHVIALAIEGKMKSSEELADNLDKLATYGKSKIAFVIGGSLGLSQEVLQRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR++ I +G+ YH
Sbjct: 123 DKLSFSKMTFPHQLMKLILLEQVYRAFRINRGEPYH 158
>gi|357235961|ref|ZP_09123304.1| putative ribosomal RNA large subunit methyltransferase H
[Streptococcus criceti HS-6]
gi|343485996|dbj|BAK61755.1| putative rRNA large subunit methyltransferase [Streptococcus
criceti]
gi|356883943|gb|EHI74143.1| putative ribosomal RNA large subunit methyltransferase H
[Streptococcus criceti HS-6]
Length = 104
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 64/103 (62%)
Query: 127 IKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ E +M+ I+ D+V++L G + SE+ A+ + DA G S I+F IGG G P
Sbjct: 1 MEKEAGRIMSKIADRDFVIVLAIEGQEWSSEEFAKKLADATLRGFSNITFIIGGSLGLAP 60
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++++RAN+ + + L HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 61 QVKKRANLLMSFGRLTLPHQLMRLVLVEQIYRAFMIQEGSPYH 103
>gi|225869484|ref|YP_002745432.1| hypothetical protein SZO_19390 [Streptococcus equi subsp.
zooepidemicus]
gi|225871486|ref|YP_002747433.1| rRNA large subunit methyltransferase [Streptococcus equi subsp.
equi 4047]
gi|254807130|sp|C0MBH4.1|RLMH_STRE4 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|259491720|sp|C0MGS7.1|RLMH_STRS7 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|225700890|emb|CAW95662.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
gi|225702760|emb|CAX00924.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 159
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQI--KDE 130
+ I++I VGK + ++ + EY +L +C+ + ++L ++ K + K QI K+
Sbjct: 1 MKIKLICVGKLKEAYLRDGIAEYQKRLSRFCQCDIIELADEKTPDKASHAEKQQIMAKEA 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
D + + D+V+ L G + SEQ + L+ + G S I+F IGG G ++
Sbjct: 61 D-RIKKKLGQRDFVIALAIEGKQLASEQFSHLLSEVTVKGYSDIAFVIGGSLGLDQSIKN 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 120 RANLLMSFGLLTLPHQLMRLVLIEQVYRAFMIQQGSPYH 158
>gi|377557298|ref|ZP_09786949.1| Ribosomal RNA large subunit methyltransferase H [Lactobacillus
gastricus PS3]
gi|376165846|gb|EHS84782.1| Ribosomal RNA large subunit methyltransferase H [Lactobacillus
gastricus PS3]
Length = 159
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN--TGDVKAQIKDED 131
+ I++I VGK + + + EY + Y K E +++ P++ + ++++ ++ E
Sbjct: 1 MTIKIIGVGKLKEKYFKAGIAEYAKRFNRYTKFEIIEVPDEKAPESLSSAEMQSVMEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++V L G + SE+ A+ + + G S ++F IGG G + +R
Sbjct: 61 ARILDKIKDREYVFALAIQGQERSSEEFAKEINQLTTYGHSDLTFVIGGSLGLSQAVMQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN +I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 121 ANTTISFGRFTLPHQLMRLVLTEQVYRAYTIINGLPYH 158
>gi|365901984|ref|ZP_09439807.1| rRNA large subunit methyltransferase [Lactobacillus malefermentans
KCTC 3548]
Length = 159
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----EDMA 133
I++I VGK + + + EY +L +CK E +++ +AQ+ D E
Sbjct: 3 IKIIGVGKLKEKYFKQGIAEYAKRLSRFCKFEIVEVPDEKAPESLSQAQMDDVMAKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE+ A + + G S I+F IGG G P++ +RAN
Sbjct: 63 ILGKIKDREYVYALAILGKERSSEEFAAEIAQLTTYGHSDITFVIGGSLGLTPEVLKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 123 TQISFGRFTLPHQLMRLVLTEQVYRAFMINEGSPYH 158
>gi|422808425|ref|ZP_16856836.1| rRNA large subunit methyltransferase [Listeria monocytogenes FSL
J1-208]
gi|378753459|gb|EHY64043.1| rRNA large subunit methyltransferase [Listeria monocytogenes FSL
J1-208]
Length = 159
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I+++TVGK + + + EY+ +L Y KV +++ P+ D + Q+KD E +
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDVHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|227529838|ref|ZP_03959887.1| SPOUT methyltransferase superfamily protein [Lactobacillus
vaginalis ATCC 49540]
gi|227350322|gb|EEJ40613.1| SPOUT methyltransferase superfamily protein [Lactobacillus
vaginalis ATCC 49540]
Length = 173
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-- 133
L I++I VGK + + + EY +L +CK + +++ +A++ DE MA
Sbjct: 15 LNIKIIGVGKLKEKYFKAGIAEYSKRLGRFCKFQIVEVPDEKAPESLSQAEM-DEVMAKE 73
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I ++V L G + SE+ A+ + + G S I+F IGG G P++ +
Sbjct: 74 GERILEKIKDKEYVYALAIKGKERTSEEFAKEINQLTTYGHSDITFVIGGSLGLSPEVLK 133
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA+ I L HQ+ LVL EQ+YR++TI+ G YH
Sbjct: 134 RADTQISFGRFTLPHQLMRLVLTEQIYRAFTIINGLPYH 172
>gi|153008393|ref|YP_001369608.1| rRNA large subunit methyltransferase [Ochrobactrum anthropi ATCC
49188]
gi|166977873|sp|A6WXS5.1|RLMH_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|151560281|gb|ABS13779.1| protein of unknown function DUF163 [Ochrobactrum anthropi ATCC
49188]
Length = 160
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKDED-MA 133
+ V VG+ ++ + +V+ Y + L+ P++ G K E+
Sbjct: 3 VSVFAVGRMKAGPERELVERYFDRFSKAGPPLGLEFAGVSEIPESRGQTAELRKAEEAQR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+ + + +++LDE G +GSE A+ +G G ++ IGGP GH P +R RA+
Sbjct: 63 IHEALDNGAALILLDERGKALGSEAFADRIGRMRDDGKRQLIVAIGGPDGHDPALRTRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + L + HQIA +++ EQLYR+ TIL G YH
Sbjct: 123 LVLALGELTWPHQIARILIAEQLYRAATILAGHPYH 158
>gi|404320627|ref|ZP_10968560.1| rRNA large subunit methyltransferase [Ochrobactrum anthropi
CTS-325]
Length = 160
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIK--DEDM 132
+ V VG+ ++ + +V+ Y + L+ P++ G A+++ +E
Sbjct: 3 VSVFAVGRMKAGPERELVERYFDRFSKAGPPLGLEFAGVSEIPESRGQT-AELRKAEEAQ 61
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + + +++LDE G +GSE A+ +G G ++ IGGP GH P +R RA
Sbjct: 62 RIHEALDNGAALILLDERGKALGSEAFADRIGRMRDDGKRQLIVAIGGPDGHDPALRSRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + L + HQIA +++ EQLYR+ TIL G YH
Sbjct: 122 DLVLALGELTWPHQIARILIAEQLYRAATILAGHPYH 158
>gi|313673997|ref|YP_004052108.1| hypothetical protein Calni_2051 [Calditerrivibrio nitroreducens DSM
19672]
gi|312940753|gb|ADR19945.1| protein of unknown function DUF163 [Calditerrivibrio nitroreducens
DSM 19672]
Length = 171
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 68 ISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI 127
I Y + + V+ GK R Q ++++Y +L + E +L+ + +
Sbjct: 16 IIYKLSIFMKLTVVLAGKVRDTDYQRILNDYAMRLNSFVNFEFKELKVAEDHP------L 69
Query: 128 KDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK 187
KD+++A + + D + + +D NG SE A + + + + + F IGG +G G +
Sbjct: 70 KDKEIAKLLELGKDGYTIAMDVNGESHTSESFANFLNETLNIKKNLV-FYIGGAFGLGKE 128
Query: 188 MRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R + I LS M + H++ALLVL+EQ+YR++TI+ G YH
Sbjct: 129 FVCRCDKLISLSRMTMAHKVALLVLMEQIYRAFTIISGHPYH 170
>gi|238855839|ref|ZP_04646128.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260664975|ref|ZP_05865825.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
gi|313472814|ref|ZP_07813302.1| putative SPOUT methyltransferase superfamily [Lactobacillus
jensenii 1153]
gi|238831502|gb|EEQ23850.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239529007|gb|EEQ68008.1| putative SPOUT methyltransferase superfamily [Lactobacillus
jensenii 1153]
gi|260561029|gb|EEX27003.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
Length = 159
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-EDMA 133
I+++ VGK + + + EY +L + K + +++ P+N + + + +K+ E
Sbjct: 3 IKIVCVGKLKEKYFKDGIAEYAKRLSRFVKFKIVEVPDEKAPENMSEAEQEHVKEVEGEK 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I ++V++ G + SE++A+ + D G+ G S I+F IGG G P + +RAN
Sbjct: 63 ILSKIKDKEYVIVTAIKGRERASEELAKEIADLGTYGHSDITFVIGGSLGTSPAVNKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 DLLSFGKLTMPHQLMRLVLTEQIYRAFMINSGSPYH 158
>gi|304439495|ref|ZP_07399404.1| alpha/beta knot family protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372091|gb|EFM25688.1| alpha/beta knot family protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 159
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I++I VGK + +++ DEY+ +L Y KVE ++++ +N + + ++ + E
Sbjct: 1 MNIKIICVGKLKEKYLKMAQDEYLKRLGPYAKVEVIEIKDEDIKENFSESEVELAKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D V L+ G SE+ A + D G S ++F IGG G ++ R
Sbjct: 61 AGILSKIKDRDLVFTLEIEGKQRSSEEFASEIEDMMVHGNSDVAFVIGGSCGISKEVMAR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ I S M HQI + L+EQ+YR++ I+K + YH
Sbjct: 121 SDRKISFSKMTFPHQIIRINLLEQIYRAFKIIKNEPYH 158
>gi|418412776|ref|ZP_12986027.1| ribosomal RNA large subunit methyltransferase H [Staphylococcus
epidermidis BVS058A4]
gi|410883837|gb|EKS31669.1| ribosomal RNA large subunit methyltransferase H [Staphylococcus
epidermidis BVS058A4]
Length = 159
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN-TGDVKAQIKD-ED 131
+ I +++VGK + + + EY +L+ Y K+E +++ P+N +G Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLRPYTKIELIEVPDEKAPENKSGKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHKDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|341820432|emb|CCC56705.1| ribosomal RNA large subunit methyltransferase H [Weissella
thailandensis fsh4-2]
Length = 159
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----EDMA 133
I++I VGK + ++ + EY +L + KVE +++ +AQ+ E
Sbjct: 3 IKIIGVGKLKEKYLKDGIAEYTKRLHKFAKVEIIEVPDEKAPEQLSQAQMDQVMSKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++N I ++V L G + SE+MA + +TG S ++F IGG G P++ +RAN
Sbjct: 63 ILNKIKDKEYVFALAIKGTERSSEEMAVEIDHLTTTGKSDLTFVIGGSLGLSPEVLKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ LVL EQ+YRS+ I YH
Sbjct: 123 TQISFGRFTLPHQLMRLVLTEQIYRSFMINAHTPYH 158
>gi|21911399|ref|NP_665667.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS315]
gi|28896771|ref|NP_803121.1| rRNA large subunit methyltransferase [Streptococcus pyogenes SSI-1]
gi|421893202|ref|ZP_16323754.1| LSU m3Psi1915 methyltransferase RlmH [Streptococcus pyogenes
NS88.2]
gi|342179214|sp|P0DF08.1|RLMH_STRP3 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|342179215|sp|P0DF09.1|RLMH_STRPQ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|21905615|gb|AAM80470.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28812025|dbj|BAC64954.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|379981044|emb|CCG27476.1| LSU m3Psi1915 methyltransferase RlmH [Streptococcus pyogenes
NS88.2]
Length = 159
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNT-GDVKAQIKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L R+ K + D + + E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERTPDKASFADNQLIMSKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE +EL+ G S I+F IGG G +++R
Sbjct: 61 QRIHKKIGERDFVIALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I KG YH
Sbjct: 121 ANMLMSFGLLTLPHQLMRLVLTEQIYRAFMITKGSPYH 158
>gi|47091430|ref|ZP_00229227.1| conserved hypothetical protein TIGR00246 [Listeria monocytogenes
str. 4b H7858]
gi|417314342|ref|ZP_12101043.1| rRNA large subunit methyltransferase [Listeria monocytogenes J1816]
gi|47020107|gb|EAL10843.1| conserved hypothetical protein TIGR00246 [Listeria monocytogenes
str. 4b H7858]
gi|328467903|gb|EGF38943.1| rRNA large subunit methyltransferase [Listeria monocytogenes J1816]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L + KV +++ P+ D + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAFAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R+N
Sbjct: 63 ILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|19747044|ref|NP_608180.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS8232]
gi|32171852|sp|Q8NYY7.1|RLMH_STRP8 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|19749305|gb|AAL98679.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS----NPKNTGDVKAQIKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L + N D + + E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERTPDKANFADNQLIMSKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE +EL+ G S I+F IGG G +++R
Sbjct: 61 QRIHKKIGERDFVIALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + + L HQ+ LVL EQ+YR++ I KG YH
Sbjct: 121 ADMLMSFGLLTLPHQLMRLVLTEQIYRAFMITKGSPYH 158
>gi|418938867|ref|ZP_13492318.1| Ribosomal RNA large subunit methyltransferase H [Rhizobium sp.
PDO1-076]
gi|375054351|gb|EHS50708.1| Ribosomal RNA large subunit methyltransferase H [Rhizobium sp.
PDO1-076]
Length = 160
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%)
Query: 116 NPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
N G+ + ++E + + +V+LDE G S + A+ +GDA G ++
Sbjct: 45 NESRAGNADTRKREEGAELSRNVPDGALIVVLDERGKAFDSPEFAKFIGDAADNGQRDMA 104
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F IGG G P++R+RA + + L + HQ+ ++L EQLYR+ TIL G YH
Sbjct: 105 FIIGGADGVDPELRDRARLVLNLGRLTWPHQLVRILLAEQLYRAVTILTGHPYHR 159
>gi|392381415|ref|YP_005030612.1| ribosomal RNA large subunit methyltransferase H [Azospirillum
brasilense Sp245]
gi|356876380|emb|CCC97147.1| ribosomal RNA large subunit methyltransferase H [Azospirillum
brasilense Sp245]
Length = 152
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
+ VG+ R+ + + DEY G+L + + +++++ + ++K Q E ++ I
Sbjct: 5 LAAVGRSRTGPARDLYDEYAGRLSWPLTLREVEVKKRLASD-ELKRQ---EAELLLAAIP 60
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
+ VV LDE G I SE A +G GA I+F IGG GHG +R RA+ + L
Sbjct: 61 AGAIVVALDERGKTITSEAFAAKIGGWRDQGAGDIAFLIGGADGHGDAVRARADFLLALG 120
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+M H + +L EQ+YR+ IL G YH
Sbjct: 121 AMTWPHMLVRGMLAEQIYRAQQILAGHPYHR 151
>gi|241766067|ref|ZP_04763982.1| protein of unknown function DUF163 [Acidovorax delafieldii 2AN]
gi|241363923|gb|EER59217.1| protein of unknown function DUF163 [Acidovorax delafieldii 2AN]
Length = 155
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV LDE G + ++ +AE + G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVALDERGTSLTTKALAERL-KGWQLGGDDVALVIGGPDGLDPAFRQGAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|366088910|ref|ZP_09455383.1| rRNA large subunit methyltransferase [Lactobacillus acidipiscis
KCTC 13900]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-EDMA 133
I++I VGK + ++ ++EY +L +CK + +++ P+ + + + +K+ E
Sbjct: 3 IKIIGVGKLKEKYLKQGIEEYAKRLSKFCKFQVVEVPDEKAPEKLSEAEMEGVKEREGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+M I ++V L G + SEQ A+ + + G S I+F IGG G P + +R+N
Sbjct: 63 IMAKIKEREYVFALAIEGKERTSEQFAQEIDSLATYGHSDITFVIGGSLGLSPAVLKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 AQIAFGGFTLPHQLMRLVLSEQIYRAYMINSGSPYH 158
>gi|326316867|ref|YP_004234539.1| hypothetical protein Acav_2059 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373703|gb|ADX45972.1| Conserved hypothetical protein CHP00246 [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 155
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q D+Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
+V LDE G + ++ +A + D G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRIVALDERGTSLTTKALAARLKD-WQLGGDDVALVIGGPDGLDPAFRQAAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|254490440|ref|ZP_05103626.1| conserved hypothetical protein TIGR00246 [Methylophaga thiooxidans
DMS010]
gi|224464184|gb|EEF80447.1| conserved hypothetical protein TIGR00246 [Methylophaga thiooxydans
DMS010]
Length = 156
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMN 136
I ++ VG K V DEY +L C+++ +++ + + T + KDE ++
Sbjct: 3 INLVAVGTKMPAWVTQGFDEYSKRLPRECQLQLVEIPAAKRGKTAQPEQWKKDEASRILM 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I + VV L+ +G + +EQ++E M + S G +S +GGP G +RA+
Sbjct: 63 AIPDNHHVVALEVDGKNWSTEQLSEQMQNWLSDGRD-VSLMVGGPDGLDNSCLQRASQKW 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS++ L H + +VL EQLYR+WTIL+ YH
Sbjct: 122 SLSALTLPHPLVRIVLAEQLYRAWTILQNHPYH 154
>gi|325661488|ref|ZP_08150113.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 4_1_37FAA]
gi|331084949|ref|ZP_08334036.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|325472204|gb|EGC75417.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 4_1_37FAA]
gi|330408649|gb|EGG88114.1| ribosomal RNA large subunit methyltransferase H [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-----E 130
+ I +ITVGK + ++ + EY +L CK+E +++ ++ K +++ E
Sbjct: 1 MKITIITVGKLKEKYLKDAIAEYTKRLSKSCKLEIIEV-ADEKTPDQASVLVENGIRRKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I +V+ L+ NG + SE+ +E + G G S I F IGG G ++ E
Sbjct: 60 GERILKHIKEGAYVITLEINGKLLSSEEFSEKIEQLGIQGKSHIIFVIGGSIGLSEEVLE 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ ++ S M HQ+ ++L+EQ+YR++ I++G YH
Sbjct: 120 KSDYALSFSKMTFPHQLMRVILLEQIYRAYRIIEGAPYH 158
>gi|283768420|ref|ZP_06341332.1| rRNA large subunit m3Psi methyltransferase RlmH [Bulleidia extructa
W1219]
gi|283104812|gb|EFC06184.1| rRNA large subunit m3Psi methyltransferase RlmH [Bulleidia extructa
W1219]
Length = 158
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQ----IKDEDMA 133
IR+I VGK + ++ + EY+ +L Y KVE +++ + +AQ K E
Sbjct: 2 IRLIVVGKVKESWMRSGIQEYLKRLSIYEKVEVVEVNDEKAPESNSEAQNEEVKKKEGNR 61
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I S ++V++LD G SE++A + + G S+I F +GG G ++ RAN
Sbjct: 62 LLKNIKSQEYVILLDLAGTQRTSEELANQLDHLYTQGKSQICFVVGGSLGLSKEIMTRAN 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS HQ+ ++L+EQ+YRS+ IL + YH
Sbjct: 122 DRWCLSLSTFPHQLVRILLLEQIYRSFRILNHEPYH 157
>gi|116871690|ref|YP_848471.1| rRNA large subunit methyltransferase [Listeria welshimeri serovar
6b str. SLCC5334]
gi|123463421|sp|A0AFA6.1|RLMH_LISW6 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|116740568|emb|CAK19688.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I++ITVGK + + + EY+ +L Y KV +++ P+ D + Q+KD E +
Sbjct: 3 IQIITVGKLKEKYLVQGIAEYLKRLTAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D V+ L +G SE+ A + + G S+++F IGG G + +R++
Sbjct: 63 ILAKIPDDTHVIALAIDGKMKSSEEFAADLDKLATYGKSKVAFVIGGSLGLSESVLKRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 EQISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|94967055|ref|YP_589103.1| hypothetical protein Acid345_0024 [Candidatus Koribacter versatilis
Ellin345]
gi|118574440|sp|Q1IVS1.1|RLMH_KORVE RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|94549105|gb|ABF39029.1| protein of unknown function DUF163 [Candidatus Koribacter
versatilis Ellin345]
Length = 146
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ +GK + +Q + EY+ +L Y E L++ S + ++KD
Sbjct: 1 MKLRVVWIGKTKESAIQTLTGEYLKRLSRYVATEGLEIGSE-----EALLKLKDRPGRTA 55
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ V++DE G +GSE++A +G G + F IG G + + A
Sbjct: 56 PVL------VLMDERGKQVGSEELANFLGYHRDQGVQDLIFAIGPSDGWQKETLKSATQV 109
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + M L H++A +VL+EQLYR +TIL G YH
Sbjct: 110 LSMGKMTLPHELARVVLLEQLYRGYTILTGHPYH 143
>gi|333898126|ref|YP_004472000.1| ribosomal RNA large subunit methyltransferase H
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333113391|gb|AEF18328.1| Ribosomal RNA large subunit methyltransferase H
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQ--IKDED 131
+ I VI VGK + ++ + EY +LK YC + ++ P++ D + + + E
Sbjct: 1 MNIDVIAVGKIKERFIEDGIQEYAKRLKPYCNINITEVNDEKAPESLSDKEKEAIMLKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I +++ L G + S + A + D + G S I+F IGG G ++
Sbjct: 61 SKIIDKIRKGSFIISLCIEGRQMDSVEFARYIEDVMTAGNSNITFVIGGSLGLHDDIKSM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ + S M HQ+ L+LVEQ+YR++ I+KG+ YH
Sbjct: 121 SDLKLSFSKMTFPHQLMRLILVEQIYRAFKIMKGETYH 158
>gi|383480867|ref|YP_005389761.1| 50S methyltransferase RlmH [Streptococcus pyogenes MGAS15252]
gi|383494821|ref|YP_005412497.1| 50S methyltransferase RlmH [Streptococcus pyogenes MGAS1882]
gi|378928857|gb|AFC67063.1| LSU methyltransferase RlmH [Streptococcus pyogenes MGAS15252]
gi|378930548|gb|AFC68965.1| LSU methyltransferase RlmH [Streptococcus pyogenes MGAS1882]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS----NPKNTGDVKAQIKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L + + D + + E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERIPDKASFADNQLIMSKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE +EL+ + G S I+F IGG G +++R
Sbjct: 61 QRIHKKIGERDFVIALAIEGKQFPSETFSELISEVTVKGYSTITFIIGGSLGLDSIIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANMLMSFGLLTLPHQLMRLVLTEQIYRAFMITQGSPYH 158
>gi|350565317|ref|ZP_08934095.1| alpha/beta knot family protein [Peptoniphilus indolicus ATCC 29427]
gi|348663913|gb|EGY80448.1| alpha/beta knot family protein [Peptoniphilus indolicus ATCC 29427]
Length = 158
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKD-EDMA 133
I ++ VGK + + + ++E+ +L +C ++ +++ P K + + ++K E
Sbjct: 3 INILAVGKVKEKYILMGIEEFAKRLTPHCNIKIIEVPDEPAPEKLSESEEQRVKQKEGEK 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ +S+ D+ + LD G + SE+ AE + D + AS I+F IGG G P++
Sbjct: 63 LLKYVSNSDYTIALDLKGKTLTSEEFAEKISDI-TMEASTINFIIGGSLGLAPEVLNACK 121
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR + I+ G YH
Sbjct: 122 YKLSFSKMTFPHQLMRLILIEQIYRGFRIINGYPYH 157
>gi|116493557|ref|YP_805292.1| hypothetical protein PEPE_1831 [Pediococcus pentosaceus ATCC 25745]
gi|122264979|sp|Q03D72.1|RLMH_PEDPA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|116103707|gb|ABJ68850.1| hypothetical protein PEPE_1831 [Pediococcus pentosaceus ATCC 25745]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKD---- 129
+ I++I VGK + ++ + EY +L +CK + +++ P++ D AQ+ +
Sbjct: 1 MNIKIIVVGKLKEKYLKQGIAEYSKRLSKFCKFQIIEVPDEKAPESLSD--AQMNEVKVK 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E ++ I D+V L+ G + SE+++ M + G S I+F IGG G +
Sbjct: 59 EGERILGKIKDRDYVFTLEIKGKERSSEELSAEMAKLATYGNSDITFVIGGSLGLSDAVM 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+N +I L HQ+ LVL EQ+YRS+ I G YH
Sbjct: 119 KRSNSAISFGRFTLPHQLMRLVLTEQIYRSFMIQAGSPYH 158
>gi|417925220|ref|ZP_12568647.1| rRNA large subunit m3Psi methyltransferase RlmH [Finegoldia magna
SY403409CC001050417]
gi|341592517|gb|EGS35403.1| rRNA large subunit m3Psi methyltransferase RlmH [Finegoldia magna
SY403409CC001050417]
Length = 171
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQI-KD 129
L I +I+VGK + ++L + E+ +L +CK V+DL S +N D + +I KD
Sbjct: 13 LNIDIISVGKVKEKYIKLGIAEFSKRLSVHCKLNIIEVDDL---SAAENLSDSEKEIVKD 69
Query: 130 EDMA-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ +M+ I + +V+ L+ G + SE++A + + G S I F IGG G G +
Sbjct: 70 KEAEKIMSKIKDNHYVITLEILGNQLTSEKLAAKIENLTIQGHSNICFVIGGSLGLGKSV 129
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R++ ++ S HQ+ L+L+EQ+YRS+ I+ YH
Sbjct: 130 LDRSDYALSFSKFTFPHQLMRLILLEQIYRSFRIINNLPYH 170
>gi|206890855|ref|YP_002249790.1| hypothetical protein THEYE_A2001 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|238056564|sp|B5YIF9.1|RLMH_THEYD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|206742793|gb|ACI21850.1| conserved protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 146
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 84 GKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW 143
GK ++ ++ +D YI L + KVE ++L+ GD + ++E ++N + D
Sbjct: 10 GKTKAKFIKEGIDHYIKLLSPFAKVELIELKEGH---GDKEKVTEEESKTILNSLKGD-- 64
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
++L +G + S + A+ + D T F IGG YG + + A+ + LSS+
Sbjct: 65 FILLHRDGKSLSSTEFADFIKDKSLT-----QFVIGGVYGVNEAVFKAASFRLSLSSLTF 119
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYHH 230
H+I+ L+L+EQLYR+ TI+ G++YH+
Sbjct: 120 THEISRLLLLEQLYRAITIIHGKSYHY 146
>gi|420209641|ref|ZP_14715077.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM003]
gi|394278538|gb|EJE22853.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM003]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQATVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YRS+ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRSFKIMRGEAYH 158
>gi|229917484|ref|YP_002886130.1| rRNA large subunit methyltransferase [Exiguobacterium sp. AT1b]
gi|259491709|sp|C4L022.1|RLMH_EXISA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|229468913|gb|ACQ70685.1| protein of unknown function DUF163 [Exiguobacterium sp. AT1b]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I +ITVGK + ++ + EY +L Y KV+++++ P++ + + + E
Sbjct: 1 MNISIITVGKLKEKYLKQGIAEYTKRLSAYAKVQEIEVSDEKAPEHLSEADMLLVKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS D V+ L G SE+ A + + G S+I+F IGG G + +R
Sbjct: 61 ERILAKISPDTHVIALAIKGKQRTSEEFARELDQLATYGKSKIAFVIGGSLGLSDDVMKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ +I S M HQ+ LVL EQ+YR++ I + + YH
Sbjct: 121 ADDTISFSKMTFPHQLMKLVLCEQIYRAYRINRNEPYH 158
>gi|420186276|ref|ZP_14692348.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM040]
gi|394252641|gb|EJD97670.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM040]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSTMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|241895456|ref|ZP_04782752.1| SPOUT methyltransferase superfamily protein [Weissella
paramesenteroides ATCC 33313]
gi|241871430|gb|EER75181.1| SPOUT methyltransferase superfamily protein [Weissella
paramesenteroides ATCC 33313]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA---- 133
I++I VGK + ++ + EY +L + KVE +++ +AQ+ D+ MA
Sbjct: 3 IKIIGVGKLKEKYLKDGIAEYAKRLHKFAKVEIIEVPDEKAPEQLSQAQM-DQVMAKEGD 61
Query: 134 -VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++N I ++V L G + SE++A + +TG S ++F IGG G P + +RA
Sbjct: 62 RILNKIKDKEYVFALAIKGTERSSEELAAEIDHLTTTGKSDLTFVIGGSLGLAPDVLKRA 121
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N I L HQ+ LVL EQ+YRS+ I YH
Sbjct: 122 NTQISFGRFTLPHQLMRLVLTEQIYRSFMINAHTPYH 158
>gi|241889820|ref|ZP_04777118.1| putative SPOUT methyltransferase [Gemella haemolysans ATCC 10379]
gi|241863442|gb|EER67826.1| putative SPOUT methyltransferase [Gemella haemolysans ATCC 10379]
Length = 158
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKDEDM 132
+ + +I VGK + + + EY +L Y K+ +++ +N ++ ++ E
Sbjct: 1 MKVTLICVGKVKEKFYRDAIKEYEKRLGAYIKLNTIEISDEKVKVENDSEIALAMEKEGN 60
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ I + +V+ L+ G ++ SE+ A + + TG S ++ IGG YG +++R+
Sbjct: 61 NILLKIKDNQYVITLEILGKNLSSEEFASKIDNLMLTGKSDVALVIGGSYGLSDSVKKRS 120
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ ++ SSM HQ+ +VL+EQ+YR++ I+ G +YH
Sbjct: 121 DFALSFSSMTFPHQMMRVVLLEQVYRAYRIITGASYH 157
>gi|422417800|ref|ZP_16494755.1| SPOUT methyltransferase superfamily protein [Listeria seeligeri FSL
N1-067]
gi|313634974|gb|EFS01360.1| SPOUT methyltransferase superfamily protein [Listeria seeligeri FSL
N1-067]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ + + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVNIVEVADEKAPEVLSEAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D +V+ L +G SE+ A + + G S+++F IGG G + +R++
Sbjct: 63 ILAKIPEDAYVIALAIDGKMKSSEEFAADLDKLATYGRSKVTFVIGGSLGLSEAVLKRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|315301288|ref|ZP_07872506.1| SPOUT methyltransferase superfamily protein [Listeria ivanovii FSL
F6-596]
gi|313630348|gb|EFR98263.1| SPOUT methyltransferase superfamily protein [Listeria ivanovii FSL
F6-596]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKDEDMA- 133
I+++TVGK + + + EY+ +L Y KV +++ P+ + + Q+KD++ A
Sbjct: 3 IQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVSIVEVADEKAPEVLSEAEMKQVKDKEGAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I D +V+ L +G SE+ A + + G S+++F IGG G + +R++
Sbjct: 63 ILAKIPEDAYVIALAIDGKMKSSEEFAADLDKLATYGRSKVTFVIGGSLGLSEAVLKRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I + L HQ+ LVLVEQ+YR++ I++G+ YH
Sbjct: 123 ERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYH 158
>gi|296131680|ref|YP_003638927.1| hypothetical protein TherJR_0133 [Thermincola potens JR]
gi|296030258|gb|ADG81026.1| protein of unknown function DUF163 [Thermincola potens JR]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I VGK + + ++EY+ +LK Y KVE ++ P+N + ++ + E
Sbjct: 3 INIIAVGKIKEKYLIAGINEYLKRLKPYAKVEVTEVPDEREPENASAAEQELVREREGEN 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I VV L +G + SE +A+ + + G S + F IGG G K+ ERA+
Sbjct: 63 ILRHIKQGATVVALAIDGKMLSSEGLADQLRNWALQGKSELCFVIGGSLGLHKKVLERAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + M H++ LVLVEQ+YR++ I +G+ YH
Sbjct: 123 LQLSFGKMTFPHRLVRLVLVEQIYRAFKINRGEKYH 158
>gi|184154497|ref|YP_001842837.1| rRNA large subunit methyltransferase [Lactobacillus fermentum IFO
3956]
gi|227514140|ref|ZP_03944189.1| SPOUT methyltransferase superfamily protein [Lactobacillus
fermentum ATCC 14931]
gi|260662558|ref|ZP_05863453.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|238689195|sp|B2GEW8.1|RLMH_LACF3 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|183225841|dbj|BAG26357.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|227087511|gb|EEI22823.1| SPOUT methyltransferase superfamily protein [Lactobacillus
fermentum ATCC 14931]
gi|260553249|gb|EEX26192.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPK--NTGDVKAQIKDEDMA 133
I++I VGK + + + EY +++ Y K E +++ P+ + ++ A + E
Sbjct: 3 IKIIGVGKVKEKYFKAGIAEYAKRMERYAKFEIVEVPDEKAPETLSQAEMDAVMAKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE+ A+ + + G S I+F IGG G P + +RAN
Sbjct: 63 ILAKIKDREYVYALAIKGKERSSEEFAKEINQLATYGHSDITFVIGGSLGLSPAVLKRAN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L H++ LVL EQ+YR++TI+ G YH
Sbjct: 123 TQISFGRFTLPHKLMRLVLAEQIYRAFTIINGLPYH 158
>gi|433459615|ref|ZP_20417385.1| hypothetical protein D477_21059, partial [Arthrobacter
crystallopoietes BAB-32]
gi|432189361|gb|ELK46474.1| hypothetical protein D477_21059, partial [Arthrobacter
crystallopoietes BAB-32]
Length = 169
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +R++T+G+K V + Y +LK V L + P + + A K+E ++
Sbjct: 15 MSLRILTIGRKHESWVAEGIGRYEKRLKKPFDVTWLPI---PHSARENDAARKEESAQLL 71
Query: 136 NIIS---SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+S ++D+V++LDE G +I S +A + A + ++ IGG YG + +R+
Sbjct: 72 GKLSGKNANDFVILLDERGRNIDSPTLARTL-QAPLDSSRNVTLIIGGAYGVDETIHQRS 130
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS +V HQ+ L+L+EQLYR+ I+ G+ YHH
Sbjct: 131 DFVWSLSKLVFPHQLVRLILIEQLYRAQEIISGRPYHH 168
>gi|335047877|ref|ZP_08540897.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Parvimonas sp. oral taxon 110 str. F0139]
gi|333757677|gb|EGL35235.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Parvimonas sp. oral taxon 110 str. F0139]
Length = 160
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQ------LRSNPKNTGDVKAQIKD 129
+ I+++ VGK + DEY ++ + K+E ++ L P +++ +K
Sbjct: 1 MNIKILCVGKLSEKFFKDACDEYKKRISAFSKIEIIEIPEEKILTQTPSKL-EIENVLKK 59
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E+ ++N IS D+V+ L+ G I SE ++ + + + G S+ IGG +G G +++
Sbjct: 60 EEGRILNKISDSDFVITLEILGKSIDSEDFSKFLEEKMNDGNSKFILVIGGSFGLGDEIK 119
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+N + S L HQ+ +VL+EQ+YR++ I+ Q YH
Sbjct: 120 KRSNFKLSFSKFTLPHQLFRVVLLEQIYRAFKIMNNQIYH 159
>gi|225011725|ref|ZP_03702163.1| protein of unknown function DUF163 [Flavobacteria bacterium
MS024-2A]
gi|225004228|gb|EEG42200.1| protein of unknown function DUF163 [Flavobacteria bacterium
MS024-2A]
Length = 157
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA-V 134
+ I ++ VGK +EY +LK+Y K L + +IK+E+ +
Sbjct: 1 MEIVLLCVGKTDRTFWADATEEYAKRLKHYTKFSIHYLSDVKAHKKTAPTEIKNEEAKNI 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I + D V +LDE G S ++ + +G RI F IGG YG + ++ +
Sbjct: 61 LQKIKTGDVVYLLDEKGKSFTSITFSKKIEQHMVSGTHRIVFIIGGAYGFSDSLYQQFPL 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I LS M +HQ+ L EQLYR++TI+ YH
Sbjct: 121 QICLSQMTFSHQMVRLFFCEQLYRAFTIINNHPYH 155
>gi|337287996|ref|YP_004627468.1| Ribosomal RNA large subunit methyltransferase H
[Thermodesulfobacterium sp. OPB45]
gi|334901734|gb|AEH22540.1| Ribosomal RNA large subunit methyltransferase H
[Thermodesulfobacterium geofontis OPF15]
Length = 156
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 10/136 (7%)
Query: 98 YIGKLKYYCKVEDL----QLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLD 153
Y+ KL+ + ++ L +++ + KN +IK E + IS +++++LDE G
Sbjct: 25 YLNKLEKFVEISALFPKVKIKESEKNI-----RIKKEGEVLKRYISDKEYLIVLDEKGKA 79
Query: 154 IGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLV 213
S ++A+ + + + I+F IGGP G ++++ A +SS+ LNH+I LLVLV
Sbjct: 80 FKSFELAKKLENL-MQNQTFITFVIGGPEGLSEELKKDAKEIWSISSLTLNHEITLLVLV 138
Query: 214 EQLYRSWTILKGQNYH 229
E LYRS+TI+KG YH
Sbjct: 139 EALYRSFTIIKGIPYH 154
>gi|417659200|ref|ZP_12308810.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU045]
gi|420222794|ref|ZP_14727709.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH08001]
gi|420224617|ref|ZP_14729457.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH06004]
gi|420230678|ref|ZP_14735357.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH04003]
gi|329736128|gb|EGG72401.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU045]
gi|394288748|gb|EJE32652.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH08001]
gi|394294467|gb|EJE38146.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH06004]
gi|394296100|gb|EJE39730.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIH04003]
Length = 159
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITIVSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|238692750|sp|B3PKN1.2|RLMH_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
Length = 155
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
IR+I VG K V+ EY ++ VE +L L KN+ DV ++ E A++
Sbjct: 3 IRIIAVGTKMPEWVEQGYAEYAKRMPRDLAVEMVELPLAQRSKNS-DVAKAMEKEGEAML 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFC--IGGPYGHGPKMRERAN 193
I + V+ LD G +EQ+AE + +G++ FC IGGP G P +A
Sbjct: 62 AAIGKGEQVIALDVKGKPWSTEQLAEQLASWKMSGSN---FCLLIGGPDGLAPAALAQAT 118
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I LS + L H + ++L+EQLYR+ TIL+ YH
Sbjct: 119 IKWSLSPLTLPHPLVRILLIEQLYRACTILQNHPYH 154
>gi|338736962|ref|YP_004673924.1| methyltransferase, ybeA [Hyphomicrobium sp. MC1]
gi|337757525|emb|CCB63345.1| putative methyltransferase, ybeA [Hyphomicrobium sp. MC1]
Length = 160
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCK---VEDLQLRSNPKN-TGDVKAQIKDEDMA 133
I + VGK + + +V+ Y +L K + + +R P++ DV + +DE
Sbjct: 3 IAISAVGKLKDAEERAIVERYAKRLNGAGKPLGLGPIDIREYPESRAADVAERKRDEAAR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D V L+ G + SE A + + GA + IGGP GHG + A
Sbjct: 63 LLRDVGPGDIAVALEPIGKSLTSEAFAAFLRETRDGGAKSCVYLIGGPDGHGEAVLSAAT 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ + L ++ L H +A +VL EQLYR+ TIL G YH
Sbjct: 123 LKLSLGALTLPHGLARVVLAEQLYRAATILAGHPYHR 159
>gi|192360291|ref|YP_001981296.1| hypothetical protein CJA_0788 [Cellvibrio japonicus Ueda107]
gi|190686456|gb|ACE84134.1| conserved hypothetical protein TIGR00246 [Cellvibrio japonicus
Ueda107]
Length = 172
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
IR+I VG K V+ EY ++ VE +L L KN+ DV ++ E A++
Sbjct: 20 IRIIAVGTKMPEWVEQGYAEYAKRMPRDLAVEMVELPLAQRSKNS-DVAKAMEKEGEAML 78
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFC--IGGPYGHGPKMRERAN 193
I + V+ LD G +EQ+AE + +G++ FC IGGP G P +A
Sbjct: 79 AAIGKGEQVIALDVKGKPWSTEQLAEQLASWKMSGSN---FCLLIGGPDGLAPAALAQAT 135
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I LS + L H + ++L+EQLYR+ TIL+ YH
Sbjct: 136 IKWSLSPLTLPHPLVRILLIEQLYRACTILQNHPYH 171
>gi|386318055|ref|YP_006014218.1| hypothetical protein SPSE_0029 [Staphylococcus pseudintermedius
ED99]
gi|323463226|gb|ADX75379.1| hypothetical protein SPSE_0029 [Staphylococcus pseudintermedius
ED99]
Length = 159
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL-RSNPKNTGDVKA--QIKD-ED 131
+ I ++ VGK + +L + EY +L Y K+E +++ T VK Q+K+ E
Sbjct: 1 MKITILAVGKLKEKYWKLAIAEYTKRLGAYSKIEVVEVPDEKAPETMSVKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I V+ L+ G + SE +A+ + + GAS +F IGG +G + R
Sbjct: 61 QRILSKIKPQSTVITLEIAGKMLSSEDLAQTLDQRMTQGASDFTFVIGGSHGLHDDVLRR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ ++ S M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SDFALSFSKMTFPHQMMRVILLEQVYRAFKIMRGEAYH 158
>gi|335427816|ref|ZP_08554736.1| rRNA large subunit methyltransferase [Haloplasma contractile
SSD-17B]
gi|335429255|ref|ZP_08556157.1| rRNA large subunit methyltransferase [Haloplasma contractile
SSD-17B]
gi|334890335|gb|EGM28607.1| rRNA large subunit methyltransferase [Haloplasma contractile
SSD-17B]
gi|334893742|gb|EGM31951.1| rRNA large subunit methyltransferase [Haloplasma contractile
SSD-17B]
Length = 159
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI-KD-ED 131
+ +++ITVGK + ++ ++EY+ +L Y K +LQ P+ D + I KD E
Sbjct: 1 MKVKLITVGKLKEKYLKQGINEYLKRLTPYGKFNIIELQDEKAPEKLSDKEMGIVKDAEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I D++V+ L G SE++A + + + G S+I+F IGG G K+ +R
Sbjct: 61 EKILNHIKRDEYVISLAIEGKQKSSERLAMDLNNLLTYGKSKITFIIGGSLGLSEKVYKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ + S M HQ+ L+L+EQ+YR+ I + YH
Sbjct: 121 SDELLSFSKMTFPHQVMRLILLEQIYRAIKINNNEPYH 158
>gi|167957150|ref|ZP_02544224.1| hypothetical protein cdiviTM7_00652 [candidate division TM7
single-cell isolate TM7c]
Length = 149
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+++I VGKK + + Y +L+ K+ D Q +GD +A+ +DE ++
Sbjct: 1 MKIICVGKKHDRWIIDGISRYERRLRAPFKL-DWQFVPYSSFSGD-RAR-RDESTELLKR 57
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
I+ D+V++LDE G +I S ++ + T ++I F IGG YG ++++RAN
Sbjct: 58 IAPQDYVILLDETGKNIDSLSLSHKLEQL--TIQNQIVFIIGGAYGVDERVKQRANFIWS 115
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS +V H + L+L+EQ+YR+ I KG YHH
Sbjct: 116 LSGLVFPHMLVRLILIEQIYRAQEISKGGPYHH 148
>gi|149919304|ref|ZP_01907786.1| hypothetical protein PPSIR1_03788 [Plesiocystis pacifica SIR-1]
gi|149819804|gb|EDM79228.1| hypothetical protein PPSIR1_03788 [Plesiocystis pacifica SIR-1]
Length = 147
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+R++ VGK + G++ +VD+Y + + +E LR A +
Sbjct: 3 LRLLAVGKLKQAGLEALVDDYRKRSRALLPIELQWLRDMDGLRAKSPAGSRG-------- 54
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
S V+LDE G I SE +A +G G + F IG +G P RE A+ +
Sbjct: 55 -SGPRRRVVLDERGQQIDSEALAGWLGSWRDQGVREVDFLIGDAHGFTPADREGADRVLA 113
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS + L H++A ++LVEQLYR+ TIL G YHH
Sbjct: 114 LSKLTLPHRLAQVLLVEQLYRAGTILAGHPYHH 146
>gi|302670668|ref|YP_003830628.1| hypothetical protein bpr_I1308 [Butyrivibrio proteoclasticus B316]
gi|302395141|gb|ADL34046.1| hypothetical protein bpr_I1308 [Butyrivibrio proteoclasticus B316]
Length = 160
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGD-VKAQIKD-EDMA 133
I +I VGK + + EY +L YCK+ ++Q P N ++ QIK E
Sbjct: 4 ISIICVGKIKEKYWNDAIAEYSKRLSRYCKINIIEVQDEKTPDNAPPAIEDQIKKKEGER 63
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +V L G SE AE + D G +G S I F IGG G + +A+
Sbjct: 64 ILQNIDPGAYVCALAIGGKKYSSEGFAEFIADKGVSGVSHIQFIIGGSLGIHESVLSKAH 123
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I S M HQ+ ++L+EQ+YR + I +G+ YH
Sbjct: 124 SQISFSDMTFPHQMMRVILLEQIYRGYRINRGEPYH 159
>gi|410663977|ref|YP_006916348.1| ribosomal RNA large subunit methyltransferase H [Simiduia
agarivorans SA1 = DSM 21679]
gi|409026334|gb|AFU98618.1| ribosomal RNA large subunit methyltransferase H [Simiduia
agarivorans SA1 = DSM 21679]
Length = 155
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
IR+I VG K V+ EY+ +L +E ++ L + K++ A K+ D A++
Sbjct: 3 IRLIAVGTKMPAWVEQGWQEYVKRLPREISLELVEIPLGTRTKSSSTAAAIAKESD-AIL 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
I ++D V+ L+ G D +EQ++ + G +S +GGP G R RA +
Sbjct: 62 QAIGANDKVIALEVKGKDWSTEQLSGQLAQWQMDG-DNVSLLVGGPDGLSDACRARAQVH 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + ++L EQ+YR+WTIL YH
Sbjct: 121 WSLSRLTLPHPLVRVLLAEQVYRAWTILANHPYH 154
>gi|366164175|ref|ZP_09463930.1| rRNA large subunit methyltransferase [Acetivibrio cellulolyticus
CD2]
Length = 159
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I ++ VGK + ++ + EY +L +C+ V+D Q N +V+ + K+
Sbjct: 1 MKITLVVVGKLKEKYLKEGISEYSKRLSRFCELQIVEVDDEQAPENLSEAQEVQVKRKEA 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+ ++ + +++LD G + SE AE + +G S ++F IGG G ++ +
Sbjct: 61 E-RILKKVKDGSALIVLDLKGKKLDSEGFAEKLNSFFISGKSHLTFVIGGSLGLDDEIIQ 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+A+ + LS M HQ+A L+L+EQ++R + IL G+ YH
Sbjct: 120 KADFRLCLSDMTFPHQLARLILLEQIFRGFKILNGETYH 158
>gi|384212195|ref|YP_005601278.1| hypothetical protein [Brucella melitensis M5-90]
gi|384409298|ref|YP_005597919.1| rRNA large subunit methyltransferase [Brucella melitensis M28]
gi|326409845|gb|ADZ66910.1| rRNA large subunit methyltransferase [Brucella melitensis M28]
gi|326539559|gb|ADZ87774.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 169
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A ++G G ++ IGGP GH P +R RA++ + L +
Sbjct: 82 LILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTW 141
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 142 PHQIARILIAEQLYRAATILAGHPYH 167
>gi|293367558|ref|ZP_06614211.1| alpha/beta knot family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291318271|gb|EFE58664.1| alpha/beta knot family protein [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 176
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 18 MKITIVSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 77
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 78 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 137
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 138 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 175
>gi|306841619|ref|ZP_07474314.1| SPOUT methyltransferase superfamily protein [Brucella sp. BO2]
gi|306288310|gb|EFM59678.1| SPOUT methyltransferase superfamily protein [Brucella sp. BO2]
Length = 179
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A ++G G ++ IGGP GH P +R RA++ + L +
Sbjct: 92 LILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTW 151
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 152 PHQIARILIAEQLYRAATILAGHPYH 177
>gi|212703473|ref|ZP_03311601.1| hypothetical protein DESPIG_01517 [Desulfovibrio piger ATCC 29098]
gi|212673087|gb|EEB33570.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Desulfovibrio piger ATCC 29098]
Length = 157
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-EDMAVM 135
P+R+++VGK + + Y ++ + ++E +++R + +AQ + E ++
Sbjct: 5 PLRLLSVGKLKVPFWKDAAAHYSQRINRWRRLECVEVRDG--DPALPQAQRNELEGRRLL 62
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ D ++LDE G+ + S Q+A+L+ + R F IGG YG +R+RA
Sbjct: 63 EALGPQDVPLVLDERGITMTSPQLAQLLQKIDNNAMGRACFIIGGAYGLDEAVRQRAWKL 122
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LSSM H++A ++L+EQLYR+ I++ YHH
Sbjct: 123 VSLSSMTFPHELARVLLLEQLYRAECIIRKVPYHH 157
>gi|420200850|ref|ZP_14706489.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM031]
gi|394267446|gb|EJE12036.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM031]
Length = 159
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L+ Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLRPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMIQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|420192437|ref|ZP_14698296.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM023]
gi|394261167|gb|EJE05967.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM023]
Length = 159
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKETEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|108804498|ref|YP_644435.1| hypothetical protein Rxyl_1662 [Rubrobacter xylanophilus DSM 9941]
gi|118574500|sp|Q1AVF5.1|RLMH_RUBXD RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|108765741|gb|ABG04623.1| protein of unknown function DUF163 [Rubrobacter xylanophilus DSM
9941]
Length = 158
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG+ R + D Y+ +L+ Y VE +++ N +++E ++ +
Sbjct: 7 IVAVGRLRGWAAEGCED-YLRRLRRYFPVEVIEVAEADMNRLGRGEALREEAGRLLRRLP 65
Query: 140 SDDWVVMLD-ENGLDIGSEQMAEL-MGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+D VV LD + G GSE++A + +G ++F IGGP G P++ ERA+
Sbjct: 66 ADAHVVALDRKTGRRYGSEELARRRLEPLAVSGRGHVAFVIGGPLGLAPEVLERADERWS 125
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ L H +A +VL+EQLYR+ IL+G+ YH
Sbjct: 126 FGEITLPHALARVVLLEQLYRAVKILRGERYH 157
>gi|422321640|ref|ZP_16402685.1| hypothetical protein HMPREF0005_01913 [Achromobacter xylosoxidans
C54]
gi|423016685|ref|ZP_17007406.1| rRNA large subunit methyltransferase [Achromobacter xylosoxidans
AXX-A]
gi|317403471|gb|EFV83979.1| hypothetical protein HMPREF0005_01913 [Achromobacter xylosoxidans
C54]
gi|338780267|gb|EGP44680.1| rRNA large subunit methyltransferase [Achromobacter xylosoxidans
AXX-A]
Length = 156
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
V VG + VQ D+Y +L C +E +++ P+ TG AQ+ E + +
Sbjct: 5 VAAVGTRMPDWVQTAWDDYAKRLPPDCALELREIKPEPRTTGKTPAQMMAAEAKRIEAAL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ + LDE G D+ + +++ + + G ++F +GGP G ++ + ++L
Sbjct: 65 PAGALRLALDERGRDLTTMALSQKL-EQWRAGGQDVAFLVGGPDGLDADLKASCSGQLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SS+ L H + +VL EQLYR+W I+ YH
Sbjct: 124 SSLTLPHPMVRVVLAEQLYRAWAIMTNHPYHR 155
>gi|418625481|ref|ZP_13188131.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU125]
gi|419769976|ref|ZP_14296064.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
aureus subsp. aureus IS-250]
gi|419770763|ref|ZP_14296829.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
aureus subsp. aureus IS-K]
gi|420164527|ref|ZP_14671255.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM095]
gi|420169325|ref|ZP_14675927.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM087]
gi|374825073|gb|EHR89022.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU125]
gi|383357658|gb|EID35125.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
aureus subsp. aureus IS-250]
gi|383362590|gb|EID39937.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
aureus subsp. aureus IS-K]
gi|394231421|gb|EJD77050.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM095]
gi|394231533|gb|EJD77160.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM087]
Length = 159
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIEIIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|163790946|ref|ZP_02185369.1| hypothetical protein CAT7_04182 [Carnobacterium sp. AT7]
gi|159873788|gb|EDP67869.1| hypothetical protein CAT7_04182 [Carnobacterium sp. AT7]
Length = 159
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-EDMA 133
I++ITVGK + +++ + EY +L YCK+E +++ P+ + + Q+K+ E
Sbjct: 3 IKIITVGKLKEKYLKMGIAEYAKRLSAYCKMELIEVPDEKAPEKLSEAEMIQVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I V L G SE A+ + G G S + F IGG G + +R+N
Sbjct: 63 ILAKIPDQAHVFALAIEGKQRTSEAFAKEIEQLGVQGKSTLVFVIGGSLGLSDAVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I M L HQ+ LVL+EQ+YR + I++ + YH
Sbjct: 123 TPISFGKMTLPHQLMRLVLIEQIYRGFKIVRNEPYH 158
>gi|373464783|ref|ZP_09556299.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
kisonensis F0435]
gi|371761902|gb|EHO50481.1| rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus
kisonensis F0435]
Length = 241
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 6/216 (2%)
Query: 20 KHFYQVLWRS-ITPKALLPTQIMTISLYLHASAGAYAKNSIPSPG-AGSFISYNCKRALP 77
+ F VLW++ +T I+ Y+H + N + S I+ K L
Sbjct: 25 RTFSTVLWKTNLTLDNFQKNAGPKINSYVHKPVDNFVDNLLISHLLCTDKITLEGKSELN 84
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----EDMA 133
I+++ VGK + + + EY +L +CK + +++ +A++ D E
Sbjct: 85 IKLVVVGKLKEKYFKQGIAEYAKRLSRFCKFQIIEVPDEKAPESLSQAEMDDVMAKEGSR 144
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE A+ + D + G S I+F IGG G ++ +RA+
Sbjct: 145 ILAKIKDREYVYALAILGKERSSEAFAKEIADLTTYGHSDITFVIGGSLGLSKEVLDRAD 204
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 205 TQISFGKFTLPHQLMRLVLTEQIYRAFMINEGSPYH 240
>gi|188587484|ref|YP_001919029.1| hypothetical protein Nther_2894 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229564365|sp|B2A3L2.1|RLMH_NATTJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|179352171|gb|ACB86441.1| protein of unknown function DUF163 [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS----NPKNTGDVKAQIKDED 131
+ RV+ VGK + + ++EY +L+ Y +E +++ N +++ + +E+
Sbjct: 1 MKFRVVAVGKIKEKYLIRGIEEYQKRLRPYTGLEITEVKDSVLPNKLYQAEIEKVLIEEE 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ + +SS D+++ LD G SE A+ + + G ++ +F IGG G +++
Sbjct: 61 NRIKSKLSSRDYIIALDSEGSQFTSENFAQQIENLTLEGINQFTFIIGGTLGLSNSLKKE 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
AN+ + S HQ+ L+L EQLYR+ I+ + YH+
Sbjct: 121 ANMLLSFSKFTFPHQLMRLILTEQLYRAIKIIHNEPYHY 159
>gi|89897761|ref|YP_521248.1| rRNA large subunit methyltransferase [Desulfitobacterium hafniense
Y51]
gi|423075943|ref|ZP_17064657.1| rRNA large subunit m3Psi methyltransferase RlmH [Desulfitobacterium
hafniense DP7]
gi|118574686|sp|Q24MD8.1|RLMH_DESHY RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|89337209|dbj|BAE86804.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361852978|gb|EHL05169.1| rRNA large subunit m3Psi methyltransferase RlmH [Desulfitobacterium
hafniense DP7]
Length = 160
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKD-ED 131
L I+++ VGK R + + EY +L Y ++E ++ P + + + ++KD E
Sbjct: 2 LQIKIVAVGKIRERFLMEGIKEYAKRLSAYIRLEMTEIADEPCPERLSAADEERVKDREG 61
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I + V++LD G + S +E M D G S ++F IGG G ++R+R
Sbjct: 62 ERLLKGIGPQEHVILLDLQGKEFTSPDFSEYMDDLALMGKSSVTFIIGGSLGVSGEVRKR 121
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ S + H + L+L+EQ+YR+ I KG+ YH
Sbjct: 122 ADYRWSFSRLTFPHPLMRLMLLEQIYRAMRISKGEPYH 159
>gi|27466941|ref|NP_763578.1| rRNA large subunit methyltransferase [Staphylococcus epidermidis
ATCC 12228]
gi|57865891|ref|YP_190070.1| rRNA large subunit methyltransferase [Staphylococcus epidermidis
RP62A]
gi|416127518|ref|ZP_11596926.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|417911899|ref|ZP_12555596.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU105]
gi|418608556|ref|ZP_13171749.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU057]
gi|418608784|ref|ZP_13171964.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU065]
gi|418612253|ref|ZP_13175297.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU117]
gi|418621997|ref|ZP_13184759.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU123]
gi|418626605|ref|ZP_13189203.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU126]
gi|418628623|ref|ZP_13191160.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU127]
gi|418631776|ref|ZP_13194224.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU128]
gi|420188853|ref|ZP_14694854.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM039]
gi|420202647|ref|ZP_14708237.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM018]
gi|420205696|ref|ZP_14711219.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM015]
gi|420211465|ref|ZP_14716824.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM001]
gi|32171817|sp|Q8CU83.1|RLMH_STAES RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|81672858|sp|Q5HK23.1|RLMH_STAEQ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|27314483|gb|AAO03620.1|AE016744_23 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57636549|gb|AAW53337.1| conserved hypothetical protein TIGR00246 [Staphylococcus
epidermidis RP62A]
gi|319399895|gb|EFV88141.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|341651656|gb|EGS75453.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU105]
gi|374401243|gb|EHQ72322.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU057]
gi|374409789|gb|EHQ80563.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU065]
gi|374819555|gb|EHR83675.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU117]
gi|374828067|gb|EHR91914.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU123]
gi|374831675|gb|EHR95412.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU126]
gi|374834205|gb|EHR97864.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU128]
gi|374836495|gb|EHS00081.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU127]
gi|394253812|gb|EJD98802.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM039]
gi|394269188|gb|EJE13726.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM018]
gi|394269381|gb|EJE13915.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM015]
gi|394280800|gb|EJE25071.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM001]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|345893337|ref|ZP_08844136.1| ribosomal RNA large subunit methyltransferase H [Desulfovibrio sp.
6_1_46AFAA]
gi|345046254|gb|EGW50145.1| ribosomal RNA large subunit methyltransferase H [Desulfovibrio sp.
6_1_46AFAA]
Length = 152
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAVMN 136
+R+I+VG+ ++ + Y+ ++ + ++E ++R + D + + E ++
Sbjct: 1 MRLISVGRLKTPFWKDAAAHYLARITRWRRLECTEVRDGDAALPPDRRNSL--ESRRILE 58
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
++ D ++LDE GL + S Q+A L+ R F +GG +G +R RA I
Sbjct: 59 ALAPQDVPLVLDERGLSLTSPQLAALLRQLDQEARGRACFIVGGAWGLDEAVRGRAYRLI 118
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS+M L H++A +VL+EQLYR+ IL+ YHH
Sbjct: 119 SLSAMTLPHELARVVLLEQLYRAECILRKVPYHH 152
>gi|335358034|ref|ZP_08549904.1| rRNA large subunit methyltransferase [Lactobacillus animalis KCTC
3501]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPK--NTGDVKAQIKDEDMA 133
I+VI VGK + ++ + EY +L +CK E +++ P+ + +++A + E
Sbjct: 3 IKVICVGKLKEKYLKQGIAEYSKRLSKFCKFEIIEVPDEKAPEKLSPAEMEAVKQKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I ++V L G + SE+ A + G+ G S ++F IGG G P + +RA
Sbjct: 63 ILHKIKDKEYVYALAIEGKERTSEEFAAEIEKLGTYGHSDVTFVIGGSLGLSPAVLKRAQ 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I L HQ+ LVL EQ+YR + I G YH
Sbjct: 123 TKISFGRFTLPHQLMRLVLTEQIYRGFMINNGSPYH 158
>gi|421894654|ref|ZP_16325140.1| ribosomal RNA large subunit methyltransferase H [Pediococcus
pentosaceus IE-3]
gi|385272413|emb|CCG90512.1| ribosomal RNA large subunit methyltransferase H [Pediococcus
pentosaceus IE-3]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKD---- 129
+ I++I VGK + ++ + EY +L +CK + +++ P++ D AQ+ +
Sbjct: 1 MNIKIIVVGKLKEKYLKQGIAEYSKRLSKFCKFQIIEVPDEKAPESLSD--AQMNEVKVK 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E ++ I D+V L+ G + SE+++ M + G S I+F IGG G +
Sbjct: 59 EGERILGKIKDRDYVFTLEIKGKERSSEELSAEMAKLTTYGNSDITFVIGGSLGLSDAVM 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+N +I L HQ+ LVL EQ+YRS+ I G YH
Sbjct: 119 KRSNSAISFGRFTLPHQLMRLVLTEQIYRSFMIQAGSPYH 158
>gi|70725024|ref|YP_251938.1| rRNA large subunit methyltransferase [Staphylococcus haemolyticus
JCSC1435]
gi|82583726|sp|Q4LAJ3.1|RLMH_STAHJ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|68445748|dbj|BAE03332.1| orfX [Staphylococcus haemolyticus JCSC1435]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I ++ VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILAVGKLKEKYWKQAISEYEKRLSAYSKIEIIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I V+ L+ G + SE +AE M + G S F IGG G + +R
Sbjct: 61 QRLLAKIKPQATVITLEIQGKMLSSEGLAEEMQRRMTQGQSDFVFVIGGSNGLHENVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ +VL+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYH 158
>gi|390570365|ref|ZP_10250632.1| rRNA large subunit methyltransferase [Burkholderia terrae BS001]
gi|420254140|ref|ZP_14757159.1| rRNA large subunit m3Psi methyltransferase RlmH [Burkholderia sp.
BT03]
gi|389937697|gb|EIM99558.1| rRNA large subunit methyltransferase [Burkholderia terrae BS001]
gi|398049901|gb|EJL42294.1| rRNA large subunit m3Psi methyltransferase RlmH [Burkholderia sp.
BT03]
Length = 156
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKDEDMAVMN 136
+ ++ VG K + DEY ++ ++E +L+ +++G ++ + E +
Sbjct: 3 LHIVAVGHKMPDWIATGFDEYAKRMPPELRIELRELKPEQRSSGRSAESVMAAERQKIEA 62
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ + +V LDE G D + Q+A + G ++F IGG G P+++ RA++ +
Sbjct: 63 ALPKNARIVALDERGKDWTTMQLANALPSWQQDGRD-VAFLIGGADGLDPELKARADMLL 121
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+LSS+ L H + ++L EQLYR+WTI + YH
Sbjct: 122 RLSSLTLPHAMVRVLLAEQLYRAWTITQNHPYH 154
>gi|257064635|ref|YP_003144307.1| hypothetical protein Shel_19420 [Slackia heliotrinireducens DSM
20476]
gi|256792288|gb|ACV22958.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM
20476]
Length = 156
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAV 134
+ I +I VGK + + DEY+ +LK Y KV ++ +PK G + +K E ++
Sbjct: 1 MKIEIIAVGKLKEKYWRDACDEYLKRLKGYAKVTVHEVPDLDPKKCGGDENALKQEGKSI 60
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + V++LD +G + S+ +A + G S I+F +GG G ++ AN
Sbjct: 61 LEALPERSHVILLDIDGKEFSSDGIAARIDAIKLGGVSDITFVVGGSNGVSDSVKSAANE 120
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + L H +A +VL+EQ+YR++ I +G+ YH
Sbjct: 121 RLSFGRITLPHNLARVVLLEQIYRAFKISRGEPYH 155
>gi|227532794|ref|ZP_03962843.1| SPOUT methyltransferase superfamily protein [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227189628|gb|EEI69695.1| SPOUT methyltransferase superfamily protein [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 165
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK---AQIKDE 130
+ I++I VGK + + + EY+ ++ + KV+ +++ P+N + + ++K+
Sbjct: 7 MNIKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKVKEG 66
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
D ++ I +WV+ L G SE A+ + D G+ G S I+F IGG G P + +
Sbjct: 67 D-RILGKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFVIGGSLGLSPAVMK 125
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R+N ++ + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 126 RSNDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYH 164
>gi|251811387|ref|ZP_04825860.1| conserved hypothetical protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|251805136|gb|EES57793.1| conserved hypothetical protein [Staphylococcus epidermidis
BCM-HMP0060]
Length = 176
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 18 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 77
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 78 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 137
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 138 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 175
>gi|94501225|ref|ZP_01307747.1| hypothetical protein RED65_08114 [Bermanella marisrubri]
gi|94426652|gb|EAT11638.1| hypothetical protein RED65_08114 [Oceanobacter sp. RED65]
Length = 155
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP--KNTGDVKAQIKDEDMAVM 135
IR+I VG K VQ EY +L C++E ++L P KN G KA I+ E +++
Sbjct: 3 IRLIAVGGKMPAWVQEGYQEYAKRLPNDCRLELVELPLGPRGKNQGVAKA-IEKEGQSML 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ S + V L+ G +EQ+AE + + G + +GGP G P+ +A
Sbjct: 62 AAMDSRNHCVALEVKGKPWSTEQLAEQLENWRMQGQD-VDLIVGGPDGLSPECVAQAKQK 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + ++L EQ+YR+WT++ YH
Sbjct: 121 WSLSPLTLPHPLVRILLAEQIYRAWTVMNNHPYH 154
>gi|317495678|ref|ZP_07954043.1| hypothetical protein HMPREF0432_00645 [Gemella morbillorum M424]
gi|316914131|gb|EFV35612.1| hypothetical protein HMPREF0432_00645 [Gemella morbillorum M424]
Length = 158
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKDEDM 132
+ + +I VGK + + + EY +L Y K+ +++ +N ++ + E
Sbjct: 1 MKVTLICVGKVKEKFYRDAIKEYEKRLGAYIKLNTIEINDEKVKVENPSEIAIAMDKEGK 60
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+++ I + +V+ L+ G ++ SE AE + + +G S + IGG YG ++++R+
Sbjct: 61 NILSKIKDNQYVITLEILGKNLSSEDFAEKINNLMLSGNSDVVLVIGGSYGLSDEVKKRS 120
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
N ++ S M HQ+ ++L+EQ+YR++ I+ G +YH
Sbjct: 121 NYALSFSKMTFPHQMMRVILLEQVYRAYRIITGASYH 157
>gi|359780683|ref|ZP_09283909.1| rRNA large subunit methyltransferase [Pseudomonas psychrotolerans
L19]
gi|359371995|gb|EHK72560.1| rRNA large subunit methyltransferase [Pseudomonas psychrotolerans
L19]
Length = 155
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQIKDEDMAVM 135
+R+I VG + V+ EY+ +L +E ++ L++ KN DV I+ E A++
Sbjct: 3 LRLIAVGSRMPRWVEEGWHEYVKRLPPELPLELVEIPLQTRGKN-ADVARLIRQEGEAML 61
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+ + VV L+ G +EQ+AE + A ++ +GGP G P+++ R+
Sbjct: 62 AKVQPGERVVTLEVTGKPWSTEQLAETL-QQWRLEARTVNLMVGGPEGLAPEVQARSEQR 120
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + L H + +++ EQLYR+WT+L G YH
Sbjct: 121 WSLSPLTLPHPLVRILVGEQLYRAWTVLAGHPYH 154
>gi|295107238|emb|CBL04781.1| Uncharacterized conserved protein [Gordonibacter pamelaeae
7-10-1-b]
Length = 156
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAVMNII 138
V+ VGK + EY+ +L+ Y K E ++ +P G V A E A++ +
Sbjct: 5 VVAVGKLKERFWTDACAEYLKRLQPYAKTEVREIADVDPGRAGGVDAARDREGAAIVGAL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
S VV+L +G SE ++ + GAS I+F IGG G +R+RA+ ++
Sbjct: 65 SPSSHVVLLAIDGKQRSSEGFSQRIDALKLNGASDIAFVIGGSDGVSAAVRQRADETLSF 124
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ L H +A +VL+EQLYR+ I +G+ YH
Sbjct: 125 GPVTLPHNLARVVLLEQLYRAQKISRGEPYH 155
>gi|56477684|ref|YP_159273.1| rRNA large subunit methyltransferase [Aromatoleum aromaticum EbN1]
gi|81357287|sp|Q5P2U2.1|RLMH_AROAE RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|56313727|emb|CAI08372.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 156
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGD-VKAQIKDEDMAVMNII 138
++ VG + V+ E+ ++ ++ +++++ P+ TG V+A + E + +
Sbjct: 5 IVAVGTRMPAWVEAGFGEFARRMPRELPLQLVEVKAEPRTTGKTVEAMMAAEATRIEAAL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ V+LDE+G D+ + +A + +A G ++ +GGP G P ++ A+ ++L
Sbjct: 65 PARCRRVILDEHGADLTTMALARRL-EAWQAGGEDVTLIVGGPDGLSPALKATAHERLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
SS+ L H + +L E LYR+W++LK YH
Sbjct: 124 SSLTLPHALVRPLLAEALYRAWSVLKNHPYH 154
>gi|220904021|ref|YP_002479333.1| hypothetical protein Ddes_0747 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254807114|sp|B8IYS8.1|RLMH_DESDA RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|219868320|gb|ACL48655.1| protein of unknown function DUF163 [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 157
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQIKDEDMAVM 135
P+R I+VGK ++ + Y+ ++K + +E ++R + D + + E ++
Sbjct: 5 PLRCISVGKLKTPFWKDAAAHYLTRIKRWRHLEYTEVRDGDAALPPDQRNAL--EGRRIV 62
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ D ++LDE+G + S Q+A L+ R F +GG +G +R+RA
Sbjct: 63 EALAPQDVALVLDEHGQKLSSPQLAALLRRLDQEARGRACFVVGGAWGLDDSVRQRAFKV 122
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M L H++A +VL+EQ+YR+ IL+ YHH
Sbjct: 123 LSLSDMTLPHELARVVLLEQIYRAECILRKVPYHH 157
>gi|408376267|ref|ZP_11173872.1| rRNA large subunit methyltransferase [Agrobacterium albertimagni
AOL15]
gi|407749734|gb|EKF61245.1| rRNA large subunit methyltransferase [Agrobacterium albertimagni
AOL15]
Length = 160
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 116 NPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRIS 175
N G+ + ++E + I +V+LDE G S + A+ +GDA G ++
Sbjct: 45 NESRAGNADTRKREEAQELSRQIPDGALIVVLDERGKAFDSAEFAKFVGDAADNGQRDMA 104
Query: 176 FCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
F IGG G P +R+RA + + L + HQ+ +++ EQLYR+ TIL G YH
Sbjct: 105 FVIGGADGIDPDLRDRARLVLNLGKLTWPHQLVRILIAEQLYRAVTILTGHPYHR 159
>gi|62290702|ref|YP_222495.1| rRNA large subunit methyltransferase [Brucella abortus bv. 1 str.
9-941]
gi|82700618|ref|YP_415192.1| rRNA large subunit methyltransferase [Brucella melitensis biovar
Abortus 2308]
gi|189024916|ref|YP_001935684.1| rRNA large subunit methyltransferase [Brucella abortus S19]
gi|237816204|ref|ZP_04595199.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260547058|ref|ZP_05822796.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260755529|ref|ZP_05867877.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 6
str. 870]
gi|260758752|ref|ZP_05871100.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 4
str. 292]
gi|260762586|ref|ZP_05874923.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260884551|ref|ZP_05896165.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261214800|ref|ZP_05929081.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 3
str. Tulya]
gi|376272437|ref|YP_005151015.1| SPOUT methyltransferase superfamily protein [Brucella abortus
A13334]
gi|423169425|ref|ZP_17156126.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI435a]
gi|423172425|ref|ZP_17159098.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI474]
gi|423175559|ref|ZP_17162227.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI486]
gi|423178882|ref|ZP_17165525.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI488]
gi|423182012|ref|ZP_17168651.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI010]
gi|423184986|ref|ZP_17171621.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI016]
gi|423188139|ref|ZP_17174751.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI021]
gi|423191280|ref|ZP_17177887.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI259]
gi|75496250|sp|Q57B50.1|RLMH_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|118574518|sp|Q2YLJ0.1|RLMH_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|238689403|sp|B2S801.1|RLMH_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|62196834|gb|AAX75134.1| conserved hypothetical protein TIGR00246 [Brucella abortus bv. 1
str. 9-941]
gi|82616719|emb|CAJ11804.1| Protein of unknown function DUF163 [Brucella melitensis biovar
Abortus 2308]
gi|189020488|gb|ACD73210.1| Protein of unknown function DUF163 [Brucella abortus S19]
gi|237788666|gb|EEP62879.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260095423|gb|EEW79301.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260669070|gb|EEX56010.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 4
str. 292]
gi|260673012|gb|EEX59833.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260675637|gb|EEX62458.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 6
str. 870]
gi|260874079|gb|EEX81148.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260916407|gb|EEX83268.1| SPOUT methyltransferase superfamily protein [Brucella abortus bv. 3
str. Tulya]
gi|363400042|gb|AEW17012.1| SPOUT methyltransferase superfamily protein [Brucella abortus
A13334]
gi|374535188|gb|EHR06714.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI474]
gi|374535382|gb|EHR06906.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI486]
gi|374535611|gb|EHR07133.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI435a]
gi|374544544|gb|EHR16017.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI488]
gi|374544934|gb|EHR16399.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI010]
gi|374544963|gb|EHR16427.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI016]
gi|374552985|gb|EHR24406.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI259]
gi|374553435|gb|EHR24853.1| ribosomal RNA large subunit methyltransferase H [Brucella abortus
bv. 1 str. NI021]
Length = 169
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A ++G G ++ IGGP GH P +R RA++ + L +
Sbjct: 82 LILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTW 141
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 142 PHQIARILIAEQLYRAATILAGHPYH 167
>gi|227508149|ref|ZP_03938198.1| SPOUT methyltransferase superfamily protein [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227511173|ref|ZP_03941222.1| SPOUT methyltransferase superfamily protein [Lactobacillus buchneri
ATCC 11577]
gi|227523379|ref|ZP_03953428.1| SPOUT methyltransferase superfamily protein [Lactobacillus
hilgardii ATCC 8290]
gi|227085655|gb|EEI20967.1| SPOUT methyltransferase superfamily protein [Lactobacillus buchneri
ATCC 11577]
gi|227089485|gb|EEI24797.1| SPOUT methyltransferase superfamily protein [Lactobacillus
hilgardii ATCC 8290]
gi|227192378|gb|EEI72445.1| SPOUT methyltransferase superfamily protein [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 161
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----ED 131
L I+++ VGK + + + EY +L +CK + +++ +A++ + E
Sbjct: 3 LNIKLVVVGKLKEKYFKQGIAEYAKRLSRFCKFQIIEVSDEKAPESLSQAEMNEVMNKEG 62
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I ++V L G + SEQ A+ + D + G S I+F IGG G + +R
Sbjct: 63 SRILDKIKDREYVYALAILGKERSSEQFAKEIADLTTYGHSDITFVIGGSLGLSKHVLDR 122
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN I L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 123 ANTQISFGKFTLPHQLMRLVLTEQIYRAFMINEGSPYH 160
>gi|422844607|ref|ZP_16891317.1| alpha/beta knot family protein [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685233|gb|EGD27351.1| alpha/beta knot family protein [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-------NPKNTGDVKAQIKDE 130
I+++ VGK + + + EY +L + KVE +Q+ +P +VK K E
Sbjct: 3 IKIVCVGKLKEKYFKDGIAEYQKRLSRFAKVEIVQVPDEKAPESLSPAQMEEVK---KRE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I ++V +L G + SE+ A+ + D G+ G S I+F IGG G + +
Sbjct: 60 GEQILSKIKDKEYVYVLAIKGKERASEEFAKELKDLGTYGHSDITFVIGGSLGTSDAVNK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDLFSFGKLTMPHQLMRLVLIEQIYRAFMINSGSPYH 158
>gi|297171223|gb|ADI22231.1| uncharacterized conserved protein [uncultured Gemmatimonadales
bacterium HF0200_34B24]
gi|297171311|gb|ADI22316.1| uncharacterized conserved protein [uncultured actinobacterium
HF0500_01C15]
Length = 152
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 94 VVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKD-EDMAVMNIISSDDWVVMLDENG 151
V +Y + Y K++ +++ + G D ++++ E ++ + ++ ++ L G
Sbjct: 13 TVSDYEDRASRYWKMDVIEVSGGTRGAGKDQAGRVREAEADRLLGKLPAELEIIALTRTG 72
Query: 152 LDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLV 211
+D+ S Q+A + ++ +SF IGG +G P++ +RA+ +++SSM L H++A LV
Sbjct: 73 VDMSSRQLAGYLEGHAVRSSAGVSFVIGGAFGLAPRVLKRAHKKLRISSMTLPHEMARLV 132
Query: 212 LVEQLYRSWTILKGQNYH 229
L EQLYR+ +I++G+ YH
Sbjct: 133 LSEQLYRAGSIIRGEPYH 150
>gi|421486662|ref|ZP_15934199.1| rRNA large subunit methyltransferase [Achromobacter piechaudii HLE]
gi|400195122|gb|EJO28121.1| rRNA large subunit methyltransferase [Achromobacter piechaudii HLE]
Length = 156
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
V VG + V+ +Y +L C +E +++ P+ TG AQ+ E + +
Sbjct: 5 VAAVGTRMPDWVETAWADYAKRLPADCALELREIKPEPRTTGKTPAQMMAAEAKRIEAAL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ + LDE G D+ + +++ + + G ++F +GGP G P ++ + ++L
Sbjct: 65 PAGALRLALDERGRDLTTMALSQKL-EQWRAGGQDVAFLVGGPDGLDPDLKASCSGQLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SS+ L H + +VL EQLYR+W I+ YH
Sbjct: 124 SSLTLPHPMVRVVLAEQLYRAWAIMTNHPYHR 155
>gi|297587850|ref|ZP_06946494.1| alpha/beta knot family protein [Finegoldia magna ATCC 53516]
gi|297574539|gb|EFH93259.1| alpha/beta knot family protein [Finegoldia magna ATCC 53516]
Length = 159
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQI-KD 129
+ I +I+VGK + ++L + E+ +L +CK V+DL S +N D + +I KD
Sbjct: 1 MNIDIISVGKVKEKYIKLGIAEFSKRLSAHCKLNIIEVDDL---SAAENLSDSEKEIVKD 57
Query: 130 EDMA-VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ +M+ I + +V+ L+ G + SE++A + + G S I F IGG G G +
Sbjct: 58 KEAEKIMSKIKDNHYVITLEILGNQLTSEKLAAKIENLTVQGHSNICFVIGGSLGLGKSV 117
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R++ ++ S HQ+ L+L+EQ+YRS+ I+ YH
Sbjct: 118 LDRSDYALSFSKFTFPHQLMRLILLEQIYRSFRIINNLPYH 158
>gi|15828725|ref|NP_326085.1| hypothetical protein MYPU_2540 [Mycoplasma pulmonis UAB CTIP]
gi|14089667|emb|CAC13427.1| conserved hypothetical protein [Mycoplasma pulmonis]
Length = 152
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 73 KRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM 132
K + I +I+VG S Q++ D+YI K+ +Y V ++++ N D+ IK+E M
Sbjct: 5 KANMKINIISVGT-LSKEFQVIFDDYIKKINFYSNVNLIKIKEFKSNNKDL--IIKNETM 61
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
A++ I + V + N SE+ A + + ISF IGG +G KM + A
Sbjct: 62 AILEKIPKNSKVFLCSLNAEQYSSEKFALFLQE------DNISFVIGGSHGVDEKMFKGA 115
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I S M HQ+ L+L+EQ+YR ++IL + YH
Sbjct: 116 -WKINFSKMTFPHQLFHLMLIEQIYRGFSILNNKIYH 151
>gi|393759435|ref|ZP_10348250.1| rRNA large subunit methyltransferase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162324|gb|EJC62383.1| rRNA large subunit methyltransferase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 156
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
VI VG++ V+ EY ++ C +E ++++ P+ +G AQ+ + E + I
Sbjct: 5 VIAVGQRMPDWVEQGWQEYARRMPQDCAIELREIKAEPRTSGKTPAQMMQAEAKRIEAAI 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ + LDE G D+ + ++A+ + ++G I+ +GGP G +++ + ++L
Sbjct: 65 PAQAMRIALDERGKDLTTVKLAQELERWRNSGQD-IAILVGGPDGLDSTLKQSCHGMLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SS+ L H + + L EQLYR+W+++ G YH
Sbjct: 124 SSLTLPHPLVRIFLAEQLYRAWSVMTGHPYHR 155
>gi|146296542|ref|YP_001180313.1| hypothetical protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|238685557|sp|A4XJN7.1|RLMH_CALS8 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|145410118|gb|ABP67122.1| protein of unknown function DUF163 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 154
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT-GDVKAQIKDEDMAVMN 136
I+VI VG + + +EY +L + K+E+++++ +N +V+ +K E ++
Sbjct: 2 IKVICVGTIKERYFKEAAEEYKKRLSRWTKIEEIEIKEEDENKYRNVEMLLKKEAEKILK 61
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
I +VV+ D NG + SE+ AEL+ S G I F IGG G +++RAN+ I
Sbjct: 62 HIKEGQYVVVFDINGTQLSSEEFAELLDRKVSKGEE-IVFVIGGSNGLADAIKKRANLLI 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S + HQ+ +++ EQ+YR +TI+KG YH
Sbjct: 121 SFSKLTFPHQLFRILVYEQIYRGFTIIKGIKYH 153
>gi|94993393|ref|YP_601492.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS2096]
gi|417857733|ref|ZP_12502792.1| rRNA large subunit methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|118574522|sp|Q1J963.1|RLMH_STRPB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|94546901|gb|ABF36948.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096]
gi|387934688|gb|EIK42801.1| rRNA large subunit methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 159
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNT-GDVKAQIKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L R+ K + D + + E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERTPDKASFADNQLIMSKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE +EL+ G S I+F IGG G +++R
Sbjct: 61 QRIHKKIEERDFVIALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANMLMSFGLLTLPHQLMRLVLTEQIYRAFMITQGSPYH 158
>gi|304318066|ref|YP_003853211.1| hypothetical protein Tthe_2678 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779568|gb|ADL70127.1| protein of unknown function DUF163 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 159
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK--AQIKDED 131
+ I +I VGK + ++ + EY+ +LK YC + +++ P++ D + + ++ E
Sbjct: 1 MNIDIIAVGKIKEKFIEDGIQEYVKRLKPYCNINIIEVNDEKAPESLSDKEKISVMQRES 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ +++ I +++ L G + S + + D + G S I+F IGG G ++
Sbjct: 61 VKIVDKIRKGSFIISLCIEGRQMDSVEFGRYIEDVMTAGNSNITFVIGGSLGLHNDIKSM 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + S M HQ+ L+L+EQ+YR++ I+KG+ YH
Sbjct: 121 SGLKLSFSKMTFPHQLMRLILIEQIYRAFKIMKGEPYH 158
>gi|148559770|ref|YP_001259677.1| rRNA large subunit methyltransferase [Brucella ovis ATCC 25840]
gi|166980227|sp|A5VSI0.1|RLMH_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|148371027|gb|ABQ61006.1| conserved hypothetical protein TIGR00246 [Brucella ovis ATCC 25840]
Length = 169
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A ++G G ++ IGGP GH P +R RA++ + L +
Sbjct: 82 LILLDERGKALGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTW 141
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 142 PHQIARILIAEQLYRAATILAGHPYH 167
>gi|311105291|ref|YP_003978144.1| hypothetical protein AXYL_02105 [Achromobacter xylosoxidans A8]
gi|310759980|gb|ADP15429.1| hypothetical protein AXYL_02105 [Achromobacter xylosoxidans A8]
Length = 156
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI-KDEDMAVMNII 138
V VG + VQ D+Y +L C +E +++ P+ TG AQ+ E + +
Sbjct: 5 VAAVGTRMPDWVQTAWDDYAKRLPADCALELREIKPEPRTTGKTPAQMMAAEAKRIEAAL 64
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
+ + LDE G D+ + +++ + + G ++F +GGP G ++ ++L
Sbjct: 65 PASALRLALDERGRDLTTMALSQKL-EQWRAGGQDVAFLVGGPDGLDAGLKASCAGQLRL 123
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
SS+ L H + +VL EQLYR+W I+ YH
Sbjct: 124 SSLTLPHPMVRVVLAEQLYRAWAIMTNHPYHR 155
>gi|17986495|ref|NP_539129.1| rRNA large subunit methyltransferase [Brucella melitensis bv. 1
str. 16M]
gi|23502693|ref|NP_698820.1| rRNA large subunit methyltransferase [Brucella suis 1330]
gi|225628391|ref|ZP_03786425.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|225853282|ref|YP_002733515.1| rRNA large subunit methyltransferase [Brucella melitensis ATCC
23457]
gi|256263229|ref|ZP_05465761.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|256370244|ref|YP_003107755.1| rRNA large subunit methyltransferase [Brucella microti CCM 4915]
gi|260565671|ref|ZP_05836154.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|261219411|ref|ZP_05933692.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261222956|ref|ZP_05937237.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261315808|ref|ZP_05955005.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261316332|ref|ZP_05955529.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261322473|ref|ZP_05961670.1| hypothetical protein BAIG_03047 [Brucella ceti M644/93/1]
gi|261325868|ref|ZP_05965065.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750986|ref|ZP_05994695.1| SPOUT methyltransferase superfamily protein [Brucella suis bv. 5
str. 513]
gi|261757486|ref|ZP_06001195.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|265987402|ref|ZP_06099959.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265991868|ref|ZP_06104425.1| hypothetical protein BAMG_03167 [Brucella melitensis bv. 1 str.
Rev.1]
gi|265995707|ref|ZP_06108264.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265998915|ref|ZP_06111472.1| hypothetical protein BAPG_03170 [Brucella ceti M490/95/1]
gi|294851081|ref|ZP_06791757.1| ribosomal RNA large subunit methyltransferase H [Brucella sp. NVSL
07-0026]
gi|340791434|ref|YP_004756899.1| hypothetical protein BPI_I1896 [Brucella pinnipedialis B2/94]
gi|376281488|ref|YP_005155494.1| rRNA large subunit methyltransferase [Brucella suis VBI22]
gi|384225480|ref|YP_005616644.1| rRNA large subunit methyltransferase [Brucella suis 1330]
gi|384445847|ref|YP_005604566.1| rRNA large subunit methyltransferase [Brucella melitensis NI]
gi|54040383|sp|P67517.1|RLMH_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|54042762|sp|P67516.1|RLMH_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|254807109|sp|C0RF89.1|RLMH_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|17982096|gb|AAL51393.1| hypothetical cytosolic protein [Brucella melitensis bv. 1 str. 16M]
gi|23348705|gb|AAN30735.1| conserved hypothetical protein TIGR00246 [Brucella suis 1330]
gi|225616237|gb|EEH13285.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|225641647|gb|ACO01561.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|256000407|gb|ACU48806.1| hypothetical protein BMI_I1856 [Brucella microti CCM 4915]
gi|260151044|gb|EEW86139.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260921540|gb|EEX88193.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260924500|gb|EEX91068.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295163|gb|EEX98659.1| hypothetical protein BAIG_03047 [Brucella ceti M644/93/1]
gi|261295555|gb|EEX99051.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261301848|gb|EEY05345.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261304834|gb|EEY08331.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261737470|gb|EEY25466.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|261740739|gb|EEY28665.1| SPOUT methyltransferase superfamily protein [Brucella suis bv. 5
str. 513]
gi|262553604|gb|EEZ09373.1| hypothetical protein BAPG_03170 [Brucella ceti M490/95/1]
gi|262766991|gb|EEZ12609.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263002824|gb|EEZ15227.1| hypothetical protein BAMG_03167 [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093190|gb|EEZ17287.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659599|gb|EEZ29860.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294821724|gb|EFG38720.1| ribosomal RNA large subunit methyltransferase H [Brucella sp. NVSL
07-0026]
gi|340559893|gb|AEK55131.1| hypothetical protein BPI_I1896 [Brucella pinnipedialis B2/94]
gi|343383660|gb|AEM19152.1| rRNA large subunit methyltransferase [Brucella suis 1330]
gi|349743836|gb|AEQ09379.1| rRNA large subunit methyltransferase [Brucella melitensis NI]
gi|358259087|gb|AEU06822.1| rRNA large subunit methyltransferase [Brucella suis VBI22]
Length = 174
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A ++G G ++ IGGP GH P +R RA++ + L +
Sbjct: 87 LILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTW 146
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 147 PHQIARILIAEQLYRAATILAGHPYH 172
>gi|120611857|ref|YP_971535.1| rRNA large subunit methyltransferase [Acidovorax citrulli AAC00-1]
gi|166988632|sp|A1TS23.1|RLMH_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|120590321|gb|ABM33761.1| protein of unknown function DUF163 [Acidovorax citrulli AAC00-1]
Length = 155
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS 139
++ VG++ Q ++Y + KVE +++ P+ + ++ E + I
Sbjct: 5 IVAVGQRVPDWAQTAYEDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIP 64
Query: 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199
VV LDE G + ++ +A + D G ++ IGGP G P R+ A+ I+LS
Sbjct: 65 RGTRVVALDERGTSLTTKALAARLKD-WQLGGDDVALVIGGPDGLDPAFRQAAHERIRLS 123
Query: 200 SMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L H + ++L+EQLYR+W++ G YH
Sbjct: 124 DLTLPHAMVRVLLIEQLYRAWSVNAGHPYHR 154
>gi|418634925|ref|ZP_13197316.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU129]
gi|420190667|ref|ZP_14696608.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM037]
gi|374836467|gb|EHS00055.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis VCU129]
gi|394258600|gb|EJE03480.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM037]
Length = 159
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQATVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYH 158
>gi|433544760|ref|ZP_20501135.1| hypothetical protein D478_13728 [Brevibacillus agri BAB-2500]
gi|432183949|gb|ELK41475.1| hypothetical protein D478_13728 [Brevibacillus agri BAB-2500]
Length = 159
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PK--NTGDVKAQIKDED 131
+ I +ITVGK + ++ +DEY +L YCK++ +++ P+ + +++ + E
Sbjct: 1 MQISIITVGKLKEKYLREGIDEYSKRLSAYCKLQVIEVNDEKAPEEMSAAEMEQVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L G SE+++ + G S+++F IGG G + +R
Sbjct: 61 ERILAQIKQDQYVIALAIEGQMWSSEKLSAELDRLALHGRSQVAFVIGGSLGLADTVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A+ + S M HQ+ LVL+EQ+YR + I +G+ YH
Sbjct: 121 ADALLSFSKMTFPHQLVRLVLLEQVYRGFRISRGEPYHR 159
>gi|313122888|ref|YP_004033147.1| ribosomal RNA large subunit methyltransferase h [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|418029874|ref|ZP_12668393.1| hypothetical protein LDBUL1632_01187 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|312279451|gb|ADQ60170.1| Ribosomal RNA large subunit methyltransferase H [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|354688677|gb|EHE88708.1| hypothetical protein LDBUL1632_01187 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 159
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-------NPKNTGDVKAQIKDE 130
I+++ VGK + + + EY +L + KVE +Q+ +P +VK K E
Sbjct: 3 IKIVCVGKLKEKYFKDGIAEYQKRLSRFAKVEIVQVPDEKAPESLSPAQMEEVK---KRE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
+++ I ++V +L G + SE+ A+ + D G+ G S I+F IGG G + +
Sbjct: 60 GERILSKIKDKEYVYVLAIKGKERASEEFAKELKDLGTYGHSDITFVIGGSLGTSDAVNK 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + + HQ+ LVL+EQ+YR++ I G YH
Sbjct: 120 RANDLFSFGKLTMPHQLMRLVLIEQIYRAFMINSGSPYH 158
>gi|90418829|ref|ZP_01226740.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336909|gb|EAS50614.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 160
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQ---LRSNPKNTGDVKAQIK-DEDMAVM 135
++ +G+ ++ + + D Y+ +LK L L P++ A+ K DE ++
Sbjct: 5 IVAIGRMKAGPERELADRYLDRLKKTGGALGLDYAGLSEFPESRLSTTAERKRDEAARLI 64
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ ++LDE G + SE+ A + D G + IGGP GH +R A+++
Sbjct: 65 APLAEASVRIVLDERGRTLSSEEFAAALADFRDAGRRDAAVLIGGPDGHDEALRSSADLA 124
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ L + HQIA +++ EQLYR+ TIL G YH
Sbjct: 125 LSLGRLTYPHQIARILIAEQLYRAATILAGHPYHR 159
>gi|399049007|ref|ZP_10740251.1| rRNA large subunit m3Psi methyltransferase RlmH [Brevibacillus sp.
CF112]
gi|398053205|gb|EJL45408.1| rRNA large subunit m3Psi methyltransferase RlmH [Brevibacillus sp.
CF112]
Length = 159
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PK--NTGDVKAQIKDED 131
+ I +ITVGK + ++ +DEY +L YCK++ +++ P+ + +++ + E
Sbjct: 1 MQISIITVGKLKEKYLREGIDEYSKRLSAYCKLQVIEVNDEKAPEEMSAAEMEQVKRKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I D +V+ L G SE+++ + G S+++F IGG G + +R
Sbjct: 61 ERILAQIKQDQYVIALAIEGQMWSSEKLSAELDRLALHGRSQVAFVIGGSLGLADTVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ LVL+EQ+YR + I +G+ YH
Sbjct: 121 ADALLSFSKMTFPHQLVRLVLLEQVYRGFRISRGEPYH 158
>gi|24986567|gb|AAN70377.1|AE016679_9 conserved hypothetical protein TIGR00246 [Pseudomonas putida
KT2440]
Length = 172
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 4/173 (2%)
Query: 59 IPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSN 116
+P+ S + N + A+ +R+I VG + V+ EY +L +E ++ L +
Sbjct: 1 MPTSTPTSSKTANKESAVRLRLIAVGSRMPKWVEEGWHEYAKRLPAELSLELVEIPLNTR 60
Query: 117 PKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISF 176
KN DV I+ E A+++ + + +V L+ +G +EQ+A + D A ++
Sbjct: 61 GKN-ADVARLIRQEGEAMLSKVQPGERIVTLEVHGKPWSTEQLATEL-DRWRLDARTVNL 118
Query: 177 CIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+GGP G P++ RA LS + L H + +++ EQ+YR+WT+L G YH
Sbjct: 119 MVGGPEGLAPEVCARAEQRWSLSPLTLPHPLVRILIGEQIYRAWTVLSGHPYH 171
>gi|342214268|ref|ZP_08706969.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Veillonella sp. oral taxon 780 str. F0422]
gi|341594499|gb|EGS37188.1| putative rRNA large subunit m3Psi methyltransferase RlmH
[Veillonella sp. oral taxon 780 str. F0422]
Length = 159
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYY-----CKVEDLQLRSNPKNTGDVKAQIKDEDMAV 134
+ +GK + ++ V E++ +L+ Y ++ + +L P + KA + DE +
Sbjct: 5 IYCIGKLKEPYLREGVAEFVKRLQPYGGVTITELPESKLGDKPSPSDKQKA-LYDEGQRL 63
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ + +VV+LD G + SE++A+ + + G S + F IGG +G ++R+RA
Sbjct: 64 LKYCNPQAFVVLLDVYGKQMSSEELAKRISELEVQGHSEMIFFIGGAFGVSEELRQRAQW 123
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ +S M HQ+ LVLVEQLYR+ I + + YH
Sbjct: 124 KLSISPMTFTHQMVRLVLVEQLYRACKINRNEPYH 158
>gi|15675944|ref|NP_270118.1| rRNA large subunit methyltransferase [Streptococcus pyogenes SF370]
gi|50915230|ref|YP_061202.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|56808869|ref|ZP_00366580.1| COG1576: Uncharacterized conserved protein [Streptococcus pyogenes
M49 591]
gi|71904559|ref|YP_281362.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS6180]
gi|71911677|ref|YP_283227.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|94989506|ref|YP_597607.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94995373|ref|YP_603471.1| rRNA large subunit methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|209560285|ref|YP_002286757.1| rRNA large subunit methyltransferase [Streptococcus pyogenes NZ131]
gi|306826413|ref|ZP_07459727.1| alpha/beta knot family protein [Streptococcus pyogenes ATCC 10782]
gi|410681520|ref|YP_006933922.1| SPOUT methyltransferase family protein [Streptococcus pyogenes A20]
gi|32171899|sp|Q99XH0.1|RLMH_STRP1 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|60390873|sp|Q5X994.1|RLMH_STRP6 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|118574520|sp|Q1JJB0.1|RLMH_STRPC RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|118574523|sp|Q48QK3.1|RLMH_STRPM RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|118574531|sp|Q1J434.1|RLMH_STRPF RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|238056563|sp|B5XJC8.1|RLMH_STRPZ RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|13623185|gb|AAK34839.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|50904304|gb|AAT88019.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394]
gi|71803654|gb|AAX73007.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180]
gi|71854459|gb|AAZ52482.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005]
gi|94543014|gb|ABF33063.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429]
gi|94548881|gb|ABF38927.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750]
gi|209541486|gb|ACI62062.1| hypothetical protein Spy49_1820c [Streptococcus pyogenes NZ131]
gi|304431408|gb|EFM34403.1| alpha/beta knot family protein [Streptococcus pyogenes ATCC 10782]
gi|395454886|dbj|BAM31225.1| rRNA large subunit methyltransferase [Streptococcus pyogenes M1
476]
gi|409694109|gb|AFV38969.1| SPOUT methyltransferase family protein [Streptococcus pyogenes A20]
Length = 159
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNT-GDVKAQIKDED 131
+ +++I VGK + ++ + EY +L +C+ E ++L R+ K + D + + E
Sbjct: 1 MKVKLICVGKLKERYLKDGISEYQKRLSRFCQFEMIELTDERTPDKASFADNQLIMSKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+ I D+V+ L G SE +EL+ G S I+F IGG G +++R
Sbjct: 61 QRIHKKIGERDFVIALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL EQ+YR++ I +G YH
Sbjct: 121 ANMLMSFGLLTLPHQLMRLVLTEQIYRAFMITQGSPYH 158
>gi|389795805|ref|ZP_10198914.1| rRNA large subunit methyltransferase [Rhodanobacter fulvus Jip2]
gi|388430136|gb|EIL87330.1| rRNA large subunit methyltransferase [Rhodanobacter fulvus Jip2]
Length = 156
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG-DVKAQIKDEDMAVMNI 137
R+I VG++ V EY +L + +E L+L+ + G D ++DE A++
Sbjct: 4 RIIAVGERMPGWVAEGFAEYRKRLSHELPLELLELKPGTRGKGRDDARAMQDEGAAILAA 63
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ D V+ LD G SE +A + G ++F IGGP GH P++ RA+ +
Sbjct: 64 LPRDTHVIALDGGGKSWSSEALAAQLAQWRMAGRD-LAFLIGGPDGHAPEVLARADQTWS 122
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L + L H + LVL EQLYR+ TI+ G YH
Sbjct: 123 LGPLTLPHMLVRLVLAEQLYRATTIMAGHPYH 154
>gi|363898979|ref|ZP_09325490.1| hypothetical protein HMPREF9625_00150 [Oribacterium sp. ACB1]
gi|395209277|ref|ZP_10398371.1| rRNA large subunit m3Psi methyltransferase RlmH [Oribacterium sp.
ACB8]
gi|361959309|gb|EHL12596.1| hypothetical protein HMPREF9625_00150 [Oribacterium sp. ACB1]
gi|394704908|gb|EJF12437.1| rRNA large subunit m3Psi methyltransferase RlmH [Oribacterium sp.
ACB8]
Length = 159
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG----DVKAQIKDED 131
+ +RV VGK + + + EY +L YCK+E +++ G + + + E
Sbjct: 1 MTLRVCAVGKIKEKFFKEALSEYGKRLFKYCKLEMIEVADEKTREGASSLEEQMVLDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+M I +V+ L G ++ S ++A+ M G S I+F IGG G ++ +R
Sbjct: 61 KRLMEKIPERSFVIALAIKGKEMDSPELAKNMEKLFLEGKSDITFVIGGSLGLSEELYQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A++ + S M HQ+ ++L+EQ+YRS+ I G+ YH
Sbjct: 121 ADLLLSFSRMTFPHQLMRVILLEQIYRSFRINSGEPYH 158
>gi|306844822|ref|ZP_07477407.1| SPOUT methyltransferase superfamily protein [Brucella inopinata
BO1]
gi|306274994|gb|EFM56764.1| SPOUT methyltransferase superfamily protein [Brucella inopinata
BO1]
Length = 179
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A +G G ++ IGGP GH P +R RA++ + L +
Sbjct: 92 LILLDERGKTLGSEAFAATVGRMRDDGKRQLIVAIGGPDGHNPALRSRADLVLALGELTW 151
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 152 PHQIARILIAEQLYRAATILAGHPYH 177
>gi|162451947|ref|YP_001614314.1| hypothetical protein sce3674 [Sorangium cellulosum So ce56]
gi|189040290|sp|A9GVS4.1|RLMH_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|161162529|emb|CAN93834.1| conserved hypothetical protein TIGR00246 [Sorangium cellulosum So
ce56]
Length = 145
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 12/152 (7%)
Query: 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMNII 138
V VG+ + ++ +DEY+G+++ Y ++++++ P G + A+
Sbjct: 5 VAAVGRVKDKPLRAAMDEYLGRIRRYVACDEIEIQDGPPAKVGPLLARA----------- 53
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
S+ V+ ++ G +GSE A + GS G ++F IGG G P + A+ L
Sbjct: 54 SAGASVIAMEVGGKALGSEAFAAGVERWGSRGKGVVAFLIGGADGLPPDVSAAADDRWSL 113
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
S + H++A LVL+EQLYR+ T+L+G+ Y H
Sbjct: 114 SPLTFPHRLARLVLIEQLYRAMTLLRGEPYAH 145
>gi|220932856|ref|YP_002509764.1| hypothetical protein Hore_20240 [Halothermothrix orenii H 168]
gi|254807120|sp|B8CZR7.1|RLMH_HALOH RecName: Full=Ribosomal RNA large subunit methyltransferase H;
AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=23S rRNA m3Psi1915 methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|219994166|gb|ACL70769.1| conserved hypothetical protein TIGR00246 [Halothermothrix orenii H
168]
Length = 159
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL---RSNPKNTGDVKAQIKD-ED 131
+ I ++ VGK + + + E++ +LK Y +V +++ R P +G ++K+ E
Sbjct: 1 MKINIMAVGKIKEDYINAGIKEFLKRLKPYTEVNVIEVDDERIPPNASGAQIEKVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + +V++LD G + SE +A+ + + G S I+F IGG G K+ +
Sbjct: 61 ERLLKNVPKNSYVIVLDVKGKPMTSEGLAKSIQNLQLQGYSNITFIIGGALGLSQKVLDT 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + S M HQ+ L+L+EQLYR++ I+KG+ YH
Sbjct: 121 GDYILSFSHMTFTHQMIRLILLEQLYRAFKIIKGEPYH 158
>gi|406980666|gb|EKE02238.1| Ribosomal RNA large subunit methyltransferase H [uncultured
bacterium]
Length = 154
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 11/157 (7%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYC--KVEDL---QLRSNPKNTGDVKAQIKDEDM 132
I VI VGK R ++ ++E+ +++ Y KV ++ L+ +P+ + +++ +
Sbjct: 3 IHVIAVGKIREKYIKSGIEEFSKRIQPYSSLKVTEISAEDLKYDPQKSVEIEGE------ 56
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
++ I +V++LD G + SE+ A + + G +++ F IGG G ++ RA
Sbjct: 57 KILKQIPDTAYVIVLDIPGKQLDSEEFAAKVKEINIKGINQLVFVIGGATGLSDSVKRRA 116
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ ++ LS M HQ+A L LVEQ+YR++ I+ + YH
Sbjct: 117 DFALSLSKMTFPHQLARLFLVEQIYRAFKIINNEPYH 153
>gi|256851725|ref|ZP_05557113.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661557|ref|ZP_05862469.1| UPF0247 protein [Lactobacillus jensenii 115-3-CHN]
gi|256615683|gb|EEU20872.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547614|gb|EEX23592.1| UPF0247 protein [Lactobacillus jensenii 115-3-CHN]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ-IKD-EDMA 133
I+++ VGK + + + EY +L + K + +++ P+N + + + +K+ E
Sbjct: 3 IKIVCVGKLKEKYFKDGIAEYAKRLSRFAKFKIVEVPDEKAPENMSEAEQEHVKEVEGEK 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I ++V++ G + SE++A+ + D G+ G S I+F IGG G P + +RA+
Sbjct: 63 ILSKIKDKEYVIVTAIKGRERASEELAKEIADLGTYGHSDITFVIGGSLGTSPAVNKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ + + HQ+ LVL EQ+YR++ I G YH
Sbjct: 123 DLLSFGKLTMPHQLMRLVLTEQIYRAFMINSGSPYH 158
>gi|224535436|ref|ZP_03675975.1| hypothetical protein BACCELL_00298, partial [Bacteroides
cellulosilyticus DSM 14838]
gi|224522958|gb|EEF92063.1| hypothetical protein BACCELL_00298 [Bacteroides cellulosilyticus
DSM 14838]
Length = 146
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA--VMNIISSDDWVVMLDENGL 152
+++Y+ + K Y E +++ KNT + +++ E + D +V+LDE G
Sbjct: 20 INDYVQRTKRYLSFE-MEVIPELKNTKSLSMEVQKEKEGELICKAFQPGDVIVLLDEGGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + A+ M +T R+ F IGGPYG PK+ + A+ + LS M +HQ+ L+
Sbjct: 79 EMRSIEFADYMKRKMNTVNKRLVFVIGGPYGFSPKVYQAAHEKMSLSKMTFSHQMVRLIF 138
Query: 213 VEQLYRS 219
VEQLYR+
Sbjct: 139 VEQLYRA 145
>gi|452852489|ref|YP_007494173.1| Ribosomal RNA large subunit methyltransferase H [Desulfovibrio
piezophilus]
gi|451896143|emb|CCH49022.1| Ribosomal RNA large subunit methyltransferase H [Desulfovibrio
piezophilus]
Length = 156
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157
Y KL + K+E+ ++ P K E ++ +S D +++LDE G ++ S
Sbjct: 24 YWKKLSRFFKLEESIVKDAPGKLPPPDKSRK-EGEGILAKVSKGDIIIILDEFGENMTSR 82
Query: 158 QMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLY 217
+A+ + R F IGGP+G +++ A SI+LS M L H++A LVL+EQLY
Sbjct: 83 TLAKRLRTWTDAPNQRPVFVIGGPFGLSDEVKSAARHSIRLSDMTLPHELARLVLLEQLY 142
Query: 218 RSWTILKGQNYHH 230
R+ TI K YHH
Sbjct: 143 RAGTIHKNMPYHH 155
>gi|154151879|ref|YP_001405497.1| hypothetical protein Mboo_2340 [Methanoregula boonei 6A8]
gi|166987440|sp|A7IAU3.1|RLMH_METB6 RecName: Full=Putative ribosomal RNA large subunit
methyltransferase H; AltName: Full=23S rRNA
(pseudouridine1915-N3)-methyltransferase; AltName:
Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH
gi|154000431|gb|ABS56854.1| protein of unknown function DUF163 [Methanoregula boonei 6A8]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMA---- 133
+R+I VGK + + + EY +L Y K+ +++ P+ +A E++A
Sbjct: 3 VRIIAVGKIKERFLSEGIAEYTKRLSPYLKLSIVEI---PEEHRGTRAPAGQEELAKEKE 59
Query: 134 ---VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I +VV LD G +I S ++A M D G + I+F IGG G +
Sbjct: 60 GGRILAAIPERAYVVALDLRGTEISSIELAARMHDWQLAGTNTIAFVIGGDLGLSDAVIN 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RA + LS + H +A L+LVEQLYR+ I G+ YH
Sbjct: 120 RAAFRLSLSPLTFTHPMARLILVEQLYRACRINSGEPYH 158
>gi|399025668|ref|ZP_10727658.1| hypothetical protein PMI13_03632 [Chryseobacterium sp. CF314]
gi|398077641|gb|EJL68609.1| hypothetical protein PMI13_03632 [Chryseobacterium sp. CF314]
Length = 157
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQI--KDEDMA 133
+ I ++ +GK + ++ Y+ +L + E +++ + KN ++ + K+E
Sbjct: 1 MRISLLCIGKTDDKEITSLIHYYLNRLPKHWNFEIIEI-PDIKNAKNLSPDLLKKEEARL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+N I +D VV+LDE G S + ++ + ++ +I IGG YG ++ RAN
Sbjct: 60 FINHIDKNDLVVILDEKGKQFTSREFSQKIDTWMNSSVKKIHLLIGGAYGFSEEIYGRAN 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M HQ+ L +VEQLYR+ IL+G+ YH+
Sbjct: 120 EKMSLSKMTFTHQMIRLFIVEQLYRADQILQGKPYHN 156
>gi|420166054|ref|ZP_14672742.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM088]
gi|394234109|gb|EJD79694.1| rRNA large subunit m3Psi methyltransferase RlmH [Staphylococcus
epidermidis NIHLM088]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I +++VGK + + + EY +L Y K+E +++ P+N D + Q+K+ E
Sbjct: 1 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I V+ L+ G + SE +A+ + + G S +F IGG G + +R
Sbjct: 61 QRLLNKIKPQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S+M HQ+ ++L+EQ+YR++ I++G+ YH
Sbjct: 121 SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEVYH 158
>gi|307942945|ref|ZP_07658290.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
gi|307773741|gb|EFO32957.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
Length = 160
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYY---CKVEDLQLRSNPKNTGD-VKAQIKDED 131
+ +++ +GK ++ + + D YI + + C V D+ L P++ + + ++E
Sbjct: 1 MRLKIGCIGKMKAGAEKDLFDRYIDRARKSGRPCGVTDVTLVEYPESRAQRAEDRKREEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + +V LDE G + SE + + G G S I F IGG GH ++ +R
Sbjct: 61 QQLLGQLDAKARLVALDEQGKSVTSEAFSSKLFAWGDDGVSEIMFAIGGADGHREELLQR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
A + I L +M HQI ++L EQ+YR+ TI G YH
Sbjct: 121 AELKIALGAMTWPHQIVRILLAEQIYRAITIRSGHPYHR 159
>gi|332654568|ref|ZP_08420311.1| putative SPOUT methyltransferase superfamily [Ruminococcaceae
bacterium D16]
gi|332516532|gb|EGJ46138.1| putative SPOUT methyltransferase superfamily [Ruminococcaceae
bacterium D16]
Length = 160
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKV-----EDLQLRSNPKNTGDVKAQIKDE 130
L + +I VGK + EY +L YCK+ + +L NP +A K+
Sbjct: 2 LSVHLICVGKLKEKFYLEACKEYEKRLGGYCKLTLTELPEEKLPQNPTQGQIDQALAKEA 61
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
D + S V + E L SE++A++M D + A + F IGG YG P +++
Sbjct: 62 DAIRAKLPPSASLVALCVEGKLR-SSEELAKIMADWQQSSAKHLVFLIGGSYGLHPSIKQ 120
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+A + + +S M H +A ++L+EQ+YR++ I +G +YH
Sbjct: 121 QAWLKLSMSPMTFPHHLARVMLLEQVYRAFKINEGSSYH 159
>gi|261754257|ref|ZP_05997966.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261744010|gb|EEY31936.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
Length = 138
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203
+++LDE G +GSE A ++G G ++ IGGP GH P +R RA++ + L +
Sbjct: 51 LILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTW 110
Query: 204 NHQIALLVLVEQLYRSWTILKGQNYH 229
HQIA +++ EQLYR+ TIL G YH
Sbjct: 111 PHQIARILIAEQLYRAATILAGHPYH 136
>gi|352516428|ref|YP_004885745.1| hypothetical protein TEH_02540 [Tetragenococcus halophilus NBRC
12172]
gi|348600535|dbj|BAK93581.1| hypothetical protein TEH_02540 [Tetragenococcus halophilus NBRC
12172]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVK-AQIKD-ED 131
+ I++I+VGK + + + EY +L+ Y K+E +++ P+N + + ++KD E
Sbjct: 1 MNIKIISVGKLKEKYLVQGIQEYTKRLQAYTKIELIEVTDEKAPENLSEAEMKKVKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + +++ L +G + SE A+ + + G S ++F IGG G ++ +R
Sbjct: 61 ERILAKVRDTEFLFALAIDGKNPSSEAFAKQIDQLTTGGTSHLTFVIGGSLGLSEEVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N I M HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 121 SNAQISFGKMTYPHQLMRLILVEQIYRAFRINRGEPYH 158
>gi|257789895|ref|YP_003180501.1| hypothetical protein Elen_0118 [Eggerthella lenta DSM 2243]
gi|257473792|gb|ACV54112.1| protein of unknown function DUF163 [Eggerthella lenta DSM 2243]
Length = 165
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
Query: 67 FISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS-NPKNTGDVKA 125
I+ + R + ++ VGK + EY+ +++ Y K E ++ +P G V A
Sbjct: 1 MIAVSKGRRMKFTIVAVGKLKEKFWTAACAEYLKRMQPYGKTEVREIADVDPARAGGVDA 60
Query: 126 QIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG 185
E A++ + VV+L +G SE ++ + GAS I+F IGG G
Sbjct: 61 ARDREGAAILAALGPSAHVVLLAIDGKQRSSESFSQRIDALKLNGASDIAFVIGGSDGVS 120
Query: 186 PKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+R+RA+ ++ + L H +A +VL+EQLYR+ I +G+ YH
Sbjct: 121 AAVRQRADETLSFGPITLPHNLARVVLLEQLYRAQKISRGEPYH 164
>gi|320333068|ref|YP_004169779.1| ribosomal RNA large subunit methyltransferase H [Deinococcus
maricopensis DSM 21211]
gi|319754357|gb|ADV66114.1| Ribosomal RNA large subunit methyltransferase H [Deinococcus
maricopensis DSM 21211]
Length = 145
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+ +ITVG+ + + DEY G+L Y KV ++ P T + + Q A++
Sbjct: 3 LHLITVGEPKLPYARAGWDEYAGRLSRYHKVRVTRV---PNTTPEREGQ------AIVRA 53
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ + ++ +D G SE ++ + + G G ++FCIGGP G ++R A+ +
Sbjct: 54 VG-NATLIAVDPRGAQRTSEALSAFIDELGVRGHGELAFCIGGPDGLTDEVRAHAHTLLG 112
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
LS + H +A++VL+E LYR+ TI KG+ YH
Sbjct: 113 LSKLTFPHDLAMVVLLEALYRAATISKGEPYH 144
>gi|312897896|ref|ZP_07757310.1| conserved hypothetical protein TIGR00246 [Megasphaera
micronuciformis F0359]
gi|310620991|gb|EFQ04537.1| conserved hypothetical protein TIGR00246 [Megasphaera
micronuciformis F0359]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKD- 129
+ +I GK + + +DE++ +LK Y +V+ + ++ NP + K QI D
Sbjct: 1 MKFHIIGSGKIKEKYLTAGIDEFLKRLKPYGQVQITEIGEERMTDNP--SAAEKKQILDK 58
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E ++ + ++ +LD G I SE++A+ D G S +F IGGP+G ++R
Sbjct: 59 EGERLLKNVRPGSYLFVLDVQGDLISSEELAQAFEDLSLHGCSEFTFLIGGPFGLSDEVR 118
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+A+ I + L HQ+ ++L EQ+YR+ I++ + YH
Sbjct: 119 RKADRCISFGRITLTHQMIRMILTEQIYRAVKIMRHEPYH 158
>gi|431081524|ref|ZP_19495614.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1604]
gi|431118285|ref|ZP_19498239.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1613]
gi|431740836|ref|ZP_19529747.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E2039]
gi|430565456|gb|ELB04602.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1604]
gi|430568242|gb|ELB07299.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E1613]
gi|430602919|gb|ELB40469.1| ribosomal RNA large subunit methyltransferase H [Enterococcus
faecium E2039]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-EDMA 133
I++I+VGK + + ++EY+ +L Y K+E +++ P+N + + Q+K+ E
Sbjct: 3 IKIISVGKLKEKYLFQGINEYVKRLNAYAKIELIEVPDEKAPENLSEAQMRQVKEKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I ++V L G + SE A+ + G G S + F IGG G + +R+N
Sbjct: 63 ILAKIKEQEYVYALAIEGKNPTSESFAKQIDQLGIQGKSHLVFVIGGSLGLSEAVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
I M HQ+ L+LVEQ+YR++ I G YH
Sbjct: 123 AQISFGKMTYPHQLMRLILVEQIYRAFRINAGAPYH 158
>gi|304436423|ref|ZP_07396398.1| alpha/beta knot family protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370587|gb|EFM24237.1| alpha/beta knot family protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 159
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKV-------EDLQLRSNPKNTGDVKAQIK 128
+ I ++ GK + ++ + EY +L++Y + E ++ R +P +V ++
Sbjct: 1 MKITIVCAGKLKEKYLRDGIAEYKKRLRHYTDLRTIEIIEERMKDRPSPAEKEEV---LR 57
Query: 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
E + + I ++++LD G ++ SE+ + + G S I+F IGGP+G ++
Sbjct: 58 REGERLSSQIPQGAYLIVLDVGGEEMSSEKFSARIDRLMLMGESHIAFLIGGPFGLSDEL 117
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R+RA++ + S L HQ+ L L+EQ+YRS+ I + + YH
Sbjct: 118 RQRADLRLSFSQFTLPHQLIRLFLMEQIYRSFKISRHEPYH 158
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,612,687,882
Number of Sequences: 23463169
Number of extensions: 144356946
Number of successful extensions: 335612
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 331556
Number of HSP's gapped (non-prelim): 2764
length of query: 230
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 92
effective length of database: 9,121,278,045
effective search space: 839157580140
effective search space used: 839157580140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)