BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037057
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TO0|A Chain A, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|B Chain B, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|C Chain C, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|D Chain D, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|E Chain E, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|F Chain F, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|G Chain G, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
pdb|1TO0|H Chain H, X-Ray Structure Of Northeast Structural Genomics Target
Protein Sr145 From Bacillus Subtilis
Length = 167
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
I ++T+GK + ++ ++EY +L Y K++ ++L P+N D +I KD E
Sbjct: 3 INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDXKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE++A+ + + G S+++F IGG G + +RA+
Sbjct: 63 ILSKISPDAHVIALAIEGKXKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVXKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S HQ+ L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKXTFPHQLXRLILVEQIYRAFRINRGEPYH 158
>pdb|1O6D|A Chain A, Crystal Structure Of A Hypothetical Protein
Length = 163
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAV 134
+L +R+ +GK ++ + Y L+ +CK E L+++ + G ++ ++ E +
Sbjct: 2 SLRVRIAVIGKLDGF-IKEGIKHYEKFLRRFCKPEVLEIKRVHR--GSIEEIVRKETEDL 58
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
N I +V+++D+ G ++ SE+ A+ + D G I+ IGGPYG ++ +A+
Sbjct: 59 TNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKD-ITILIGGPYGLNEEIFAKAHR 117
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS M H + +L+++EQ++R++ I+ G+NYH+
Sbjct: 118 VFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHY 153
>pdb|1VH0|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|B Chain B, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|C Chain C, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|D Chain D, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|E Chain E, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|F Chain F, Crystal Structure Of A Hypothetical Protein
Length = 161
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-E 130
+L I ++ VGK + + + EY +L Y K++ +++ P+N D + Q+K+ E
Sbjct: 2 SLKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKE 61
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I V+ L+ G + SE +A+ + + G S F IGG G + +
Sbjct: 62 GQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ 121
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R+N ++ S M HQ+ +VL+EQ+YR++ I++G+ YH
Sbjct: 122 RSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYH 160
>pdb|4FAK|A Chain A, Crystal Structure Of Orfx In Complex With
S-adenosylmethionine
Length = 163
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVK-AQIKD-ED 131
+ I ++ VGK + + + EY +L Y K++ +++ P+N D + Q+K+ E
Sbjct: 5 MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEG 64
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I V+ L+ G + SE +A+ + + G S F IGG G + +R
Sbjct: 65 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 124
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ +VL+EQ+YR++ I++G+ YH
Sbjct: 125 SNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYH 162
>pdb|1NS5|A Chain A, X-Ray Structure Of Ybea From E.Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er45
pdb|1NS5|B Chain B, X-Ray Structure Of Ybea From E.Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er45
Length = 155
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMN 136
++++ VG K VQ EY+ + E +++ + + D+K +I D++
Sbjct: 3 LQLVAVGTKXPDWVQTGFTEYLRRFPKDXPFELIEIPAGKRGKNADIK-RILDKEGEQXL 61
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
+ + +V LD G + Q+A + G +S IGGP G P + A S
Sbjct: 62 AAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRD-VSLLIGGPEGLSPACKAAAEQSW 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LS++ L H + +++ E LYR+W+I YH
Sbjct: 121 SLSALTLPHPLVRVLVAESLYRAWSITTNHPYHR 154
>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
Length = 217
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 5 ISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAG 52
+S I LV ++IW+ ++ P Q++ SL +HA+AG
Sbjct: 121 MSMIFVLLVTGVIIWRPYFA---------QYFPMQVVRYSLLIHAAAG 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,947,313
Number of Sequences: 62578
Number of extensions: 271562
Number of successful extensions: 513
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 7
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)