BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037057
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXB4|Y5620_ARATH Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana
GN=At5g10620 PE=3 SV=1
Length = 193
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/193 (63%), Positives = 154/193 (79%), Gaps = 3/193 (1%)
Query: 41 MTISLYLHASAGAYAKNSIPSP---GAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDE 97
M+IS+ ++ ++ P+P G + RALPIRVITVGKKRS GV+L+VDE
Sbjct: 1 MSISVMANSHLNQPYASASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDE 60
Query: 98 YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157
Y KLK YC ED +RSNP+N DV+AQ++DE++A+M +I SDDWVV+LDE G DI SE
Sbjct: 61 YKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSE 120
Query: 158 QMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLY 217
QMAEL+GDAG++GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLY
Sbjct: 121 QMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLY 180
Query: 218 RSWTILKGQNYHH 230
RSWTILKGQNYHH
Sbjct: 181 RSWTILKGQNYHH 193
>sp|A0M0D0|RLMH_GRAFK Ribosomal RNA large subunit methyltransferase H OS=Gramella
forsetii (strain KT0803) GN=rlmH PE=3 SV=1
Length = 157
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTG--DVKAQIKDEDMA 133
+ I+++ +GK ++ ++ Y +L++Y K E ++ + K T D Q E
Sbjct: 1 MTIKLVCIGKTDKKELEALIKIYSDRLQHYIKFE-FEIIPDLKKTKNLDENQQKSKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ + + D+VV+LDENG SE +E + +TG R+ F IGGPYG ++ +RA+
Sbjct: 60 ILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRAD 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L EQLYR++TILK + YHH
Sbjct: 120 SKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156
>sp|Q1DCX5|RLMH_MYXXD Ribosomal RNA large subunit methyltransferase H OS=Myxococcus
xanthus (strain DK 1622) GN=rlmH PE=3 SV=1
Length = 154
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 13/160 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL------RSNPKNTGDVKAQIKD 129
+ +R++++GK RS + V EY +L +Y + E +++ R P GD KA
Sbjct: 1 MKVRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKP---GDAKAA--- 54
Query: 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR 189
E A+++ DW+V LDE G + S +++ +G A TGA + F IGG G ++R
Sbjct: 55 EAEAILSKRKPQDWLVALDERGSLLDSVELSRYVGKA-QTGAKDLLFIIGGDEGLDARVR 113
Query: 190 ERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 114 DAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153
>sp|A5FE53|RLMH_FLAJ1 Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=rlmH PE=3 SV=1
Length = 157
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL++ + KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ +S+ D +++LDENG S +E + ++G + F IGGPYG + ++A
Sbjct: 60 ILSKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS M +HQ+ L +EQLYR +TIL+ + YHH
Sbjct: 120 GKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156
>sp|A6H0Q2|RLMH_FLAPJ Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511) GN=rlmH
PE=3 SV=1
Length = 157
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKA--QIKDEDMA 133
+ I++I +GK + +Q ++D+Y +L +Y K DL++ ++ KN ++ Q + E
Sbjct: 1 MNIKLIAIGKTDNKNLQTLIDDYTKRLSFYIKF-DLEIIADIKNVKNLSETQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+ D +++LDENG S ++ + ++G + F IGGPYG + ++
Sbjct: 60 ILSKITPTDQLILLDENGKTFSSVAFSDQLQKKMNSGIKTLVFVIGGPYGFSDDVYKKTF 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L +EQLYR +TILK + YHH
Sbjct: 120 GKISLSQMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156
>sp|A0PXE8|RLMH_CLONN Ribosomal RNA large subunit methyltransferase H OS=Clostridium
novyi (strain NT) GN=rlmH PE=3 SV=1
Length = 159
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++L +DEY +L YCK+ ++L P N + I + E
Sbjct: 1 MNITIICVGKLKEKYLKLAIDEYSKRLSRYCKLNIVELNDEKTPDNASEKDELIIKQKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + + +V+ LD NG SE++AEL+GD G G S I+ IGG G ++ R
Sbjct: 61 SKILAHVKENMYVIALDLNGKMASSEELAELIGDLGLKGKSNIALVIGGSLGLSKEVLNR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 158
>sp|A3CRD3|RLMH_STRSV Ribosomal RNA large subunit methyltransferase H OS=Streptococcus
sanguinis (strain SK36) GN=rlmH PE=3 SV=1
Length = 159
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKDED 131
+ I+++TVGK + ++ + EY+ +L +CKVE ++L P D++ Q ++ E
Sbjct: 1 MKIKLVTVGKLKEKYLKDGIAEYMKRLNRFCKVEMIELANEKTPDKASDLENQQILEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ ++V+ L G SE+ ++LM D G S I+F IGG G P +++R
Sbjct: 61 NKILAKINEREFVIALAIEGNQFPSEKFSQLMMDTTVHGFSDITFVIGGSLGLYPAVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN+ + + L HQ+ LVL+EQ+YR++ I +G YH
Sbjct: 121 ANLLMSFGKLTLPHQLMRLVLIEQIYRAFMIQQGSPYH 158
>sp|A5MZP4|RLMH_CLOK5 Ribosomal RNA large subunit methyltransferase H OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=rlmH PE=3 SV=1
Length = 159
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++ V+EY +L YC++ ++Q P N + I + E
Sbjct: 1 MNITIIAVGKLKEKYLKAAVEEYSKRLSRYCRLNIIEVQDEKTPDNASSSEQDIIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ + +VV LD G +GSE+ ++ +G+ G +G S I+F IGG G ++ +R
Sbjct: 61 RRILKYINDNMYVVALDLKGSMMGSEEFSKFVGNLGLSGKSNIAFIIGGSLGISSEILKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRIMLLEQIYRGFRIMKGEPYH 158
>sp|B9E3M4|RLMH_CLOK1 Ribosomal RNA large subunit methyltransferase H OS=Clostridium
kluyveri (strain NBRC 12016) GN=rlmH PE=3 SV=1
Length = 159
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI--KDED 131
+ I +I VGK + ++ V+EY +L YC++ ++Q P N + I + E
Sbjct: 1 MNITIIAVGKLKEKYLKAAVEEYSKRLSRYCRLNIIEVQDEKTPDNASSSEQDIIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I+ + +VV LD G +GSE+ ++ +G+ G +G S I+F IGG G ++ +R
Sbjct: 61 RRILKYINDNMYVVALDLKGSMMGSEEFSKFVGNLGLSGKSNIAFIIGGSLGISSEILKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR + I+KG+ YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRIMLLEQIYRGFRIMKGEPYH 158
>sp|Q11RC7|RLMH_CYTH3 Ribosomal RNA large subunit methyltransferase H OS=Cytophaga
hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rlmH
PE=3 SV=1
Length = 155
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQIKDEDM 132
+ +++ T+GK ++ +Y +L +Y E L++ PKNT DV K+E+
Sbjct: 1 MKLQLWTIGKTNDAYLKEGCAQYTKRLPHYLPFEYLEI-PEPKNTKLSSDVLK--KEEEK 57
Query: 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192
+ + + D +++LDE G + S + + + ++ A + F IGGPYG + +RA
Sbjct: 58 LIFDRLQDSDQLILLDEKGNEFTSTEFGQYIQKKMNSVAGNLIFLIGGPYGFSDAVYKRA 117
Query: 193 NISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
N I LS M +HQ+ L +EQLYR+ TI+KG+ YHH
Sbjct: 118 NGKIALSKMTFSHQMVRLFALEQLYRACTIIKGEKYHH 155
>sp|A7GVM2|RLMH_BACCN Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus
subsp. cytotoxis (strain NVH 391-98) GN=rlmH PE=3 SV=1
Length = 159
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGVR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SEQ AE + + G S+I+F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEQFAESLDCLATYGKSKIAFVIGGSLGLSTEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQIYRAFRINRGEPYH 158
>sp|Q2FTV8|RLMH_METHJ Putative ribosomal RNA large subunit methyltransferase H
OS=Methanospirillum hungatei (strain JF-1 / DSM 864)
GN=rlmH PE=3 SV=1
Length = 159
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---KNTGDVKAQIKDEDMAV 134
IR+ +GK + ++ + +Y ++ +C+VE ++ P + ++ E +
Sbjct: 4 IRIRAIGKIKESFIRDAIADYAKRMCSFCQVECIEYPEAPVPDTHPSTIEMACVSEGEKL 63
Query: 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANI 194
+ I S D+V++LD G + SE +AE++ G ++ F IGGP+G ++ NI
Sbjct: 64 CSGIDSLDYVIILDRTGKQVSSEGLAEVIRRCEIEGPYQLVFIIGGPHGLSKDCLQKGNI 123
Query: 195 SIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ LS+M HQIA L+L EQLYR++TI++G YH
Sbjct: 124 ILSLSAMTFPHQIARLLLYEQLYRAFTIIRGLPYH 158
>sp|B9M0D9|RLMH_GEOSF Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp.
(strain FRC-32) GN=rlmH PE=3 SV=1
Length = 153
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++V+ VGK + V+ +DEY G++ Y + DL + K V+A + E ++
Sbjct: 1 MRLKVLWVGKTQEEWVRRGIDEYAGRIGRYMSI-DLAEARDEKGAA-VEAMREREGERLL 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ + +V+LDE G + S ++A + G + F IGG YG +R +A +
Sbjct: 59 KLLPKNARLVLLDERGEQMSSPELARFLATNRDGGTQELVFVIGGAYGFSDSLRAKAFKT 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ + L+EQLYR +TI+ G+ YHH
Sbjct: 119 ISLSRMTFTHQMVRIFLLEQLYRGFTIINGEPYHH 153
>sp|B1HPJ4|RLMH_LYSSC Ribosomal RNA large subunit methyltransferase H OS=Lysinibacillus
sphaericus (strain C3-41) GN=rlmH PE=3 SV=1
Length = 159
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDED 131
+ I +++VGK + +++ +DEY+ +L Y K++ +++ P+ D + +I K E
Sbjct: 1 MNITIVSVGKLKEKYLKMGIDEYVKRLGGYAKIDLIEVADEKAPEQLSDAEMEIVKKKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ IS+D +V+ L NG SEQMA + + G S+I+F IGG G + +R
Sbjct: 61 ERILAKISTDTYVIALAINGKMKTSEQMAADLESLMTYGKSKIAFVIGGSLGLHEDVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ M L HQ+ LVLVEQ+YRS+ I+KG+ YH
Sbjct: 121 ADEQQSFGKMTLPHQLMKLVLVEQVYRSFRIMKGEPYH 158
>sp|B2V1Q9|RLMH_CLOBA Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=rlmH PE=3
SV=1
Length = 159
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI-KD-ED 131
+ I +I+VGK + ++ +DEY +L YCK+ +LQ P N + I KD E
Sbjct: 1 MNITIISVGKLKEKYLKHAIDEYSKRLSRYCKLNIVELQDEQTPDNASEKDELIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ LD G I SE++++ + + G G S + F IGG G + +R
Sbjct: 61 NKILNSIKDNMYVITLDLKGKMISSEELSKFIDNCGVRGNSNLCFIIGGSLGLSEAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N S+ S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 SNYSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158
>sp|Q39QQ9|RLMH_GEOMG Ribosomal RNA large subunit methyltransferase H OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=rlmH PE=3 SV=1
Length = 154
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++++ VGK + ++ +DEY G+++ Y +E + R + +A E +
Sbjct: 1 MKLKILWVGKTQEEWLRRGIDEYTGRIRRYTPLEIAEARE--EKGAAAEAMRTRECERLE 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ + +V+LDE G + S ++A MG + + F IGG YG R RA+
Sbjct: 59 KLVPKNARLVLLDERGDQLTSPELAAFMGKCRDSAVPEMVFAIGGAYGFADSFRARADRV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
+ LS + HQ+ ++L+EQ+YR+ TIL G+ YHH
Sbjct: 119 LALSRLTFTHQMVRVILLEQIYRAHTILNGEPYHH 153
>sp|B1KTH1|RLMH_CLOBM Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Loch Maree / Type A3) GN=rlmH PE=3
SV=1
Length = 159
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDED 131
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N + I + E
Sbjct: 1 MNISIISVGKIKEKFLRAAIDEYSKRLSKYCKLNIIEVTDEKTPDNASLKEENIIREKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ I +++V+ +D G I SE+ ++L+ + TG S I+F IGG G ++ R
Sbjct: 61 SLILKHIKDNNFVIAIDLKGKSIASEEFSDLIENCRLTGNSTIAFVIGGSLGLSQQVLSR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 121 ANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>sp|C1FNH5|RLMH_CLOBJ Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=rlmH PE=3 SV=1
Length = 159
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVADEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKSITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSE 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>sp|B1IH25|RLMH_CLOBK Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Okra / Type B1) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQIKDEDM- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDN-----ASLKEENII 55
Query: 133 ------AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G
Sbjct: 56 KEKEGNLILKHIKDNSFVIALDLKGKAITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSE 115
Query: 187 KMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
++ RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 116 QVLSRANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>sp|B9E922|RLMH_MACCJ Ribosomal RNA large subunit methyltransferase H OS=Macrococcus
caseolyticus (strain JCSC5402) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL----RSNPKNTGDVKAQIKDED 131
+ I +ITVGK + ++ VDEY+ +L Y K+E +++ S+ + D++ + E
Sbjct: 1 MKITIITVGKLKEKYWKMAVDEYVKRLGAYSKIELVEVADEKDSDNMSEKDIEIAKRKEA 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ + D +V L+ G + S Q+A+ M +TG S ++F IGG G + +R
Sbjct: 61 ERILSKVKDDSFVYTLEILGKQLDSVQLAKEMEQKMNTGKSHLTFIIGGSNGLHQNVMDR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N ++ S M HQ+ ++L+EQ+YR + I+KGQ YH
Sbjct: 121 SNYALSFSKMTFPHQMMKVILLEQIYRGFRIMKGQAYH 158
>sp|Q5M229|RLMH_STRT2 Ribosomal RNA large subunit methyltransferase H OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rlmH
PE=3 SV=2
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ L+LVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLILVEQIYRAFMIQQGSPYH 158
>sp|Q5LXI0|RLMH_STRT1 Ribosomal RNA large subunit methyltransferase H OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=rlmH PE=3 SV=2
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASEAENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ L+LVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLILVEQIYRAFMIQQGSPYH 158
>sp|Q8EL52|RLMH_OCEIH Ribosomal RNA large subunit methyltransferase H OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD----EDMA 133
I +++VGK + ++ +DEY +L Y KV +++ +A++K+ E
Sbjct: 3 ITIVSVGKLKEKYLKQGIDEYKKRLNAYAKVSIIEVADEKAPETMSEAEMKEVKRKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ I+ D +V+ L+ G +GSEQ+A+ + + + G S++ F IGG G ++ R++
Sbjct: 63 ILSSIAPDAFVITLEIEGKMLGSEQLAKKLDELATYGKSKVVFVIGGSLGISQDVQRRSD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+++ S M HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 123 LALSFSKMTFPHQLMRLVLIEQVYRSFRINRGEPYH 158
>sp|Q8XH85|RLMH_CLOPE Ribosomal RNA large subunit methyltransferase H OS=Clostridium
perfringens (strain 13 / Type A) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I VI+VGK + ++ +DEY +L YCK+E ++L P N + + QIK+ E
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRYCKLEIIELPDEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + V+ +D G +I SE+ ++ + + G G S I+F IGG G ++ +R
Sbjct: 61 KLILSKIKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSQEVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYH 158
>sp|Q0TM49|RLMH_CLOP1 Ribosomal RNA large subunit methyltransferase H OS=Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
GN=rlmH PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I VI+VGK + ++ +DEY +L YCK+E ++L P N + + QIK+ E
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRYCKLEIIELPDEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + V+ +D G +I SE+ ++ + + G G S I+F IGG G ++ +R
Sbjct: 61 KLILSKIKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSQEVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYH 158
>sp|Q0SPV0|RLMH1_CLOPS Ribosomal RNA large subunit methyltransferase H 1 OS=Clostridium
perfringens (strain SM101 / Type A) GN=rlmH1 PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKA-QIKD-ED 131
+ I VI+VGK + ++ +DEY +L YCK+E ++L P N + + QIK+ E
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRYCKLEIIELPDEKTPDNASEKEELQIKEKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I + V+ +D G +I SE+ ++ + + G G S I+F IGG G ++ +R
Sbjct: 61 KLILSKIKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSQEVIKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYH 158
>sp|Q03I69|RLMH_STRTD Ribosomal RNA large subunit methyltransferase H OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=rlmH PE=3
SV=2
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV--KAQIKDED 131
+ +++ITVGK + ++ + EYI +L + K E ++L P N + KA + E
Sbjct: 1 MKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASESENKAILDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++ + D+V+ L G SEQ A+ + A G S I+F IGG G PK+++R
Sbjct: 61 QRILAKVGDRDYVIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
AN + + HQ+ LVLVEQ+YR++ I +G YH
Sbjct: 121 ANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQQGSPYH 158
>sp|Q899K8|RLMH_CLOTE Ribosomal RNA large subunit methyltransferase H OS=Clostridium
tetani (strain Massachusetts / E88) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK-----VEDLQLRSNPKNTGDVKAQIKDE 130
+ I +I+VGK + ++L V+EY +L YCK V D + N +++ + K+
Sbjct: 1 MNITIISVGKLKEKYLKLAVEEYSKRLSRYCKLNIIEVTDEKTPDNASEKEELQIKEKEG 60
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
D+ + NI + +V+ LD NG ++ S + + D G G S ++F IGG G K+
Sbjct: 61 DLILKNI-KDNMFVIALDLNGNELTSIDFSNFINDLGIKGESNLTFVIGGSLGLSSKVLS 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
R+N + S M HQ+ ++L+EQ+YR + I+ G+ YH
Sbjct: 120 RSNYKLCFSKMTFPHQLFRVMLLEQIYRGYRIMNGEPYH 158
>sp|C6E7L6|RLMH_GEOSM Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp.
(strain M21) GN=rlmH PE=3 SV=1
Length = 154
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ ++++ VGK + V+ ++EY G+++ Y +E L+ R + + E +A
Sbjct: 1 MRLKLLWVGKTQESWVRTGIEEYAGRIRRYAPLEILEAREEKGAQAAAMRERECERLA-- 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
+I +V+LDE G + S ++A + G + F IGG YG R +A S
Sbjct: 59 KLIPKGGRLVLLDERGEAMTSPELASFLSKNRDQGTQDLVFAIGGAYGFTDAFRSQAFKS 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M L HQ+ + L+EQ+YR +TI+ G+ YHH
Sbjct: 119 ISLSRMTLTHQMVRVFLLEQIYRGFTIINGEPYHH 153
>sp|Q5WAI7|RLMH_BACSK Ribosomal RNA large subunit methyltransferase H OS=Bacillus clausii
(strain KSM-K16) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKN--TGDVKAQIKDEDMA 133
I +++VGK + ++ +DEY +L Y K++++++ P++ T D++ K E
Sbjct: 3 ITILSVGKLKEKYIKQGIDEYKKRLSAYAKIQEIEVPDEKAPEHLSTEDMRLVKKKEGER 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ IS+D +V+ L G SEQ+A+ + G+ G S+I+F IGG G + RA+
Sbjct: 63 LLAKISADSYVIALAIEGNMKTSEQLAKNIEQLGTYGKSKIAFIIGGSLGLSNDVYARAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ LVL EQLYRS+ I++G+ YH
Sbjct: 123 ELLSFSKMTFPHQLMKLVLFEQLYRSFRIMRGEPYH 158
>sp|B2TRC7|RLMH_CLOBB Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNTGDVKAQI-KD-ED 131
+ I +I+VGK + ++ +DEY +L YCK+ +LQ P N + I KD E
Sbjct: 1 MNITIISVGKLKEKYLKHAIDEYSKRLSRYCKLNILELQDEQTPDNASEKDELIIKDKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
++N I + +V+ LD G + SE++++ + + G G S + F IGG G + +R
Sbjct: 61 NKILNSIKDNMYVITLDLKGKMMSSEELSKFIDNCGVRGNSNLCFVIGGSLGLSEAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+N S+ S M HQ+ ++L+EQ+YR++ I G+ YH
Sbjct: 121 SNHSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158
>sp|B5YER1|RLMH_DICT6 Ribosomal RNA large subunit methyltransferase H OS=Dictyoglomus
thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
GN=rlmH PE=3 SV=1
Length = 153
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
I++I +GK R+ ++ V+EY+ +L + ++ ++ + + A +K+E++ + N+
Sbjct: 3 IKIIVIGKIRNEFIKAGVNEYLKRLLPFINIK-IEFLPSFSELSEKIALLKEEEIILKNL 61
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ ++++ LD++G I SE+ ++ + + S+I+F IGG YG K+++ +N +
Sbjct: 62 -RNGEFIITLDKDGEKISSEEFSKKLFKLPISQNSQITFIIGGIYGVSEKIKQSSNFILS 120
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
LSSM H+ ALL+L+EQ+YR+ I + + YH+
Sbjct: 121 LSSMTFTHEFALLILLEQIYRALKIQRNEPYHY 153
>sp|A7GJG3|RLMH_CLOBL Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=rlmH PE=3 SV=1
Length = 159
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQ--IKD-E 130
+ I +I+VGK + ++ +DEY +L YCK+ +++ P N +K + IKD E
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEVTDEKTPDN-ASLKEENIIKDKE 59
Query: 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190
++ I + +V+ LD G I SE+ + L+ + TG S I+F IGG G ++
Sbjct: 60 GNLILKHIKDNSFVIALDLKGKSITSEEFSGLIENCRLTGNSTIAFVIGGSLGLSEQVLS 119
Query: 191 RANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + S M HQ+ ++L+EQ+YR++ IL G+ YH
Sbjct: 120 RANYKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158
>sp|C3KWC5|RLMH_CLOB6 Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain 657 / Type Ba4) GN=rlmH PE=3 SV=1
Length = 159
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDM--- 132
+ I +I+VGK + ++ +DEY +L YCK+ +++ P A +K+E++
Sbjct: 1 MNISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEV---PDEKTPDNASLKEENIIKE 57
Query: 133 ----AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM 188
++ I + +V+ LD G I SE+ ++L+ + TG S I+F IGG G ++
Sbjct: 58 KEGTLILKHIKDNSFVIALDLKGKSIASEEFSDLIENCRLTGNSTIAFVIGGSLGLSEQV 117
Query: 189 RERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
RAN + S M HQ+ ++L+EQ+YR++ IL + YH
Sbjct: 118 LSRANYRLSFSKMTFPHQLFRVMLLEQVYRAFRILCREPYH 158
>sp|Q6HAH7|RLMH_BACHK Ribosomal RNA large subunit methyltransferase H OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=rlmH
PE=3 SV=2
Length = 159
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YRS+ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRSFRINRGEPYH 158
>sp|A5G903|RLMH_GEOUR Ribosomal RNA large subunit methyltransferase H OS=Geobacter
uraniireducens (strain Rf4) GN=rlmH PE=3 SV=1
Length = 153
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGK + V+ +DEY G+++ Y +E + + + +A + E ++
Sbjct: 1 MKMRVLWVGKTQEEWVRRGIDEYAGRIRRYTPLELAE--AKEEKGAAAEAMREREGERLV 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ + +++LDE G + S +A + G ++F IGG YG R A +
Sbjct: 59 KLLPRNARLILLDERGEQLSSPDLAGFIAANRDGGVQELAFAIGGAYGFSDSFRSMAYKT 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ + L+EQ+YR +TI+ G+ YHH
Sbjct: 119 IALSRMTFTHQMVRIFLLEQIYRGFTIINGEPYHH 153
>sp|Q6AL30|RLMH_DESPS Ribosomal RNA large subunit methyltransferase H OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=rlmH PE=3
SV=1
Length = 153
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNII 138
++ +GK + + V+EY+ +L++Y KVE L+ K G + + ++ ++ + N+
Sbjct: 4 EILLLGKIKDSFIAEGVEEYLKRLQHYTKVELRYLKGKGKK-GALLSTEQEGELLLANV- 61
Query: 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198
++ +VV LD G ++ SE +AE + + +TG + + IGGP G P + RA++ +
Sbjct: 62 PANAFVVALDVQGKNLSSEGLAEQVINWENTGTRSVCYLIGGPLGLSPSLLARADLRLSF 121
Query: 199 SSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S M H + L+LVEQLYR++TI G+ YH
Sbjct: 122 SKMTFTHDMVRLLLVEQLYRAYTIKAGEKYH 152
>sp|Q8A7G2|RLMH_BACTN Ribosomal RNA large subunit methyltransferase H OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=rlmH PE=3 SV=1
Length = 157
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 95 VDEYIGKLKYYCKVEDLQLRSNPKNTGDVK--AQIKDEDMAVMNIISSDDWVVMLDENGL 152
+++YI + K + D+++ KNT + Q + E ++ + D +V+LDE+G
Sbjct: 20 INDYIQRTKRFITF-DMEVIPELKNTKSLSMDQQKEKEGELILKALQPGDVIVLLDEHGK 78
Query: 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVL 212
++ S + A+ M +T R+ F IGGPYG K+ + AN I +S M +HQ+ L+
Sbjct: 79 EMRSLEFADYMKRKMNTVNKRLVFVIGGPYGFSEKVYQVANEKISMSKMTFSHQMIRLIF 138
Query: 213 VEQLYRSWTILKGQNYHH 230
VEQ+YR+ TIL G YHH
Sbjct: 139 VEQIYRAMTILNGGPYHH 156
>sp|A8MKH4|RLMH_ALKOO Ribosomal RNA large subunit methyltransferase H OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rlmH PE=3 SV=1
Length = 159
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I+VGK + ++L +DEYI +L Y K+ +++ P+N + QI E
Sbjct: 3 ITIISVGKLKEKYLKLGIDEYIKRLTRYAKLNIIEIPDEKAPENLSSAEEQIVKNKEGEG 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ I +V+ LD G + SE++A+ + G G S I+F IGG G + +RA+
Sbjct: 63 ILKNIKDGMYVIALDLKGKMLSSEELADKLQSLGVAGNSNIAFIIGGSLGLSEDVLKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
+ S M HQ+ L+L+EQ+YR I+KG+ YH
Sbjct: 123 YKLCFSPMTFPHQLMKLILLEQIYRGLRIIKGEPYH 158
>sp|C1A8S7|RLMH_GEMAT Ribosomal RNA large subunit methyltransferase H OS=Gemmatimonas
aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC
100505) GN=rlmH PE=3 SV=1
Length = 154
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
+ ++ +G+ R G+ + +Y G+ +Y ++ ++++ P + E ++
Sbjct: 3 VALLVIGRPRHAGLADAIRDYEGRAAHYWPLDVIEVKEEPGRNLSADVVREREAERLVAR 62
Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
+ +D VV D G+ + S Q A + + + A ++F IGG +G GP +RERAN +
Sbjct: 63 LPADAVVVACDPGGVTMDSAQFARWLQEQRES-ARNVAFVIGGAHGLGPAVRERANRRLS 121
Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
L+ L H++A +V+ EQLYR+ TI++G+ YH
Sbjct: 122 LAPWTLPHEVARMVMAEQLYRAGTIIRGEPYH 153
>sp|A6L2W9|RLMH_BACV8 Ribosomal RNA large subunit methyltransferase H OS=Bacteroides
vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
GN=rlmH PE=3 SV=1
Length = 157
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDV--KAQIKDEDMA 133
+ ++ VG+ +++Y+ + K++ D+++ KNT ++ + Q + E
Sbjct: 1 MKFTLLVVGRTVEKHYITAINDYVERTKHFISF-DMEVIPELKNTKNLSMEQQKEKEGEL 59
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
++ + D VV+LDE+G + S + A + T R+ F IGGPYG PK+ + A
Sbjct: 60 ILKALLPGDVVVLLDEHGKEFRSVEFANWIERKMHTVNKRLVFIIGGPYGFAPKIYDAAQ 119
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M +HQ+ L+ VEQLYR+ TIL YHH
Sbjct: 120 EKISLSKMTFSHQMIRLIFVEQLYRAMTILNNGPYHH 156
>sp|C4Z0V6|RLMH_EUBE2 Ribosomal RNA large subunit methyltransferase H OS=Eubacterium
eligens (strain ATCC 27750 / VPI C15-48) GN=rlmH PE=3
SV=1
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDV-KAQIKD-ED 131
+ I V+ VGK + VDEY +L YCK++ ++L P N DV QIK+ E
Sbjct: 1 MRITVVCVGKIKEKFYTQAVDEYSKRLSRYCKLDIVELPDEKTPDNASDVVNEQIKNKEG 60
Query: 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER 191
+++ I D +V L G + S +++E + G G S I+F IGG G + +R
Sbjct: 61 ERILSAIKDDAYVCALAIEGKMLDSVELSEKIDRLGIDGTSNITFVIGGSLGLADAVLKR 120
Query: 192 ANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
A+ + S M HQ+ ++L+EQ+YR++ I+K + YH
Sbjct: 121 ADYKLSFSKMTFPHQLMRVILLEQIYRAYRIMKNEPYH 158
>sp|Q630E3|RLMH_BACCZ Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus
(strain ZK / E33L) GN=rlmH PE=3 SV=2
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>sp|B7HGB9|RLMH_BACC4 Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus
(strain B4264) GN=rlmH PE=3 SV=1
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>sp|B7IS03|RLMH_BACC2 Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus
(strain G9842) GN=rlmH PE=3 SV=1
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>sp|P59730|RLMH_BACAN Ribosomal RNA large subunit methyltransferase H OS=Bacillus
anthracis GN=rlmH PE=3 SV=1
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>sp|A0RLN8|RLMH_BACAH Ribosomal RNA large subunit methyltransferase H OS=Bacillus
thuringiensis (strain Al Hakam) GN=rlmH PE=3 SV=2
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>sp|C3LGR6|RLMH_BACAC Ribosomal RNA large subunit methyltransferase H OS=Bacillus
anthracis (strain CDC 684 / NRRL 3495) GN=rlmH PE=3 SV=1
Length = 159
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI--KDEDMA 133
I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E +
Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
+++ IS D V+ L G SE+ A + + G S+++F IGG G ++ +R+N
Sbjct: 63 ILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSN 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH
Sbjct: 123 ESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
>sp|C4XSX5|RLMH_DESMR Ribosomal RNA large subunit methyltransferase H OS=Desulfovibrio
magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
GN=rlmH PE=3 SV=1
Length = 154
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN 136
P+R+I VG+ R+ + Y+ ++ Y E++ R + D + +E AV+
Sbjct: 3 PLRLIAVGQVRTPYFREACAHYLTAVRRYLPAEEILARDG--KSADPARRKAEEAKAVLA 60
Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
++ D+VV+LDE+G + S ++A L+ +F IGGP+G + +RA+ +
Sbjct: 61 ALAPRDFVVVLDEHGPSLPSTELAALLKKRIEDPGRAPAFVIGGPFGLDKAVLDRADRLL 120
Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
L L H++A +VL EQLYR+ +I G YHH
Sbjct: 121 ALGPGTLPHELARVVLYEQLYRAASINAGAPYHH 154
>sp|Q747Q7|RLMH_GEOSL Ribosomal RNA large subunit methyltransferase H OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=rlmH PE=3 SV=1
Length = 153
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVM 135
+ +RV+ VGK + V+ +DEY G+++ Y +E + R + + E +
Sbjct: 1 MKLRVLWVGKTQEEWVRRGIDEYAGRVRRYAPLEIGEARDEKGAAAEAMRARECERLD-- 58
Query: 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195
++ +++LDE G + S + A + T ++F IGG YG + R RA+
Sbjct: 59 KLVPRTSRLILLDERGDQLTSPEFAAYISRCRDTAVPELAFAIGGAYGFADEFRRRADRV 118
Query: 196 IKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
I LS M HQ+ +VL+EQ+YR++TI+ + YHH
Sbjct: 119 IALSRMTFTHQMVRVVLLEQIYRAFTIIGNEPYHH 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,376,407
Number of Sequences: 539616
Number of extensions: 3417194
Number of successful extensions: 9902
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8974
Number of HSP's gapped (non-prelim): 631
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)