Query 037057
Match_columns 230
No_of_seqs 175 out of 1014
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02590 SPOUT_MTase: Predicte 100.0 1.3E-62 2.8E-67 410.8 16.1 154 76-229 1-155 (155)
2 PRK00103 rRNA large subunit me 100.0 5.8E-62 1.3E-66 407.8 19.9 155 76-230 1-156 (157)
3 COG1576 Uncharacterized conser 100.0 4.7E-62 1E-66 407.0 18.4 154 76-230 1-155 (155)
4 TIGR00246 tRNA_RlmH_YbeA rRNA 100.0 8.5E-61 1.8E-65 399.4 19.9 152 77-230 1-153 (153)
5 PRK04171 ribosome biogenesis p 97.1 0.0028 6.1E-08 56.6 8.4 68 134-209 137-208 (222)
6 PF03587 EMG1: EMG1/NEP1 methy 96.4 0.0033 7.1E-08 55.2 3.5 71 134-207 119-192 (202)
7 COG0336 TrmD tRNA-(guanine-N1) 95.7 0.051 1.1E-06 49.1 8.1 73 141-219 79-153 (240)
8 COG1901 Uncharacterized conser 95.5 0.02 4.3E-07 50.3 4.4 61 132-203 115-179 (197)
9 PRK00026 trmD tRNA (guanine-N( 95.3 0.088 1.9E-06 47.8 8.3 72 141-218 81-154 (244)
10 TIGR00088 trmD tRNA (guanine-N 94.8 0.16 3.4E-06 45.9 8.1 72 141-218 78-151 (233)
11 PRK14599 trmD tRNA (guanine-N( 94.6 0.18 4E-06 45.1 8.1 73 141-218 78-152 (222)
12 PRK01037 trmD tRNA (guanine-N( 94.0 0.25 5.5E-06 47.1 8.1 72 141-218 77-150 (357)
13 PF14419 SPOUT_MTase_2: AF2226 93.9 0.18 3.8E-06 43.5 6.2 72 140-214 92-164 (173)
14 COG1756 Mra1 Uncharacterized c 93.7 0.17 3.8E-06 45.3 6.2 64 135-205 140-205 (223)
15 PRK02135 hypothetical protein; 92.4 0.19 4.2E-06 44.4 4.4 61 132-203 117-181 (201)
16 PF04013 Methyltrn_RNA_2: Puta 92.4 0.1 2.2E-06 46.1 2.7 63 131-203 115-181 (199)
17 PF00588 SpoU_methylase: SpoU 87.9 0.41 8.9E-06 38.4 2.4 47 141-198 75-122 (142)
18 PF04407 DUF531: Protein of un 87.3 1.7 3.7E-05 37.5 5.9 46 149-199 102-148 (173)
19 KOG3073 Protein required for 1 86.7 1.4 2.9E-05 39.6 5.2 71 136-213 154-226 (236)
20 cd05014 SIS_Kpsf KpsF-like pro 85.7 14 0.0003 28.4 9.9 76 136-218 43-127 (128)
21 PF01637 Arch_ATPase: Archaeal 83.3 1.2 2.6E-05 36.7 3.1 85 143-228 120-229 (234)
22 PRK15114 tRNA (cytidine/uridin 78.6 8.5 0.00018 34.5 7.1 77 140-220 72-160 (245)
23 PRK03958 tRNA 2'-O-methylase; 76.9 12 0.00027 32.5 7.3 59 144-209 79-137 (176)
24 cd05013 SIS_RpiR RpiR-like pro 76.9 30 0.00064 26.2 12.2 75 136-217 56-137 (139)
25 CHL00181 cbbX CbbX; Provisiona 76.8 20 0.00043 32.7 9.1 67 143-210 124-204 (287)
26 TIGR00050 rRNA_methyl_1 RNA me 76.2 11 0.00024 33.4 7.1 75 140-220 71-157 (233)
27 PRK10433 putative RNA methyltr 74.5 13 0.00029 33.1 7.2 79 138-219 68-158 (228)
28 PF09936 Methyltrn_RNA_4: SAM- 74.0 8.9 0.00019 33.7 5.7 53 140-196 103-157 (185)
29 PRK11557 putative DNA-binding 71.9 59 0.0013 28.7 10.7 84 135-225 170-260 (278)
30 TIGR03127 RuMP_HxlB 6-phospho 71.6 52 0.0011 27.1 9.7 81 137-224 69-164 (179)
31 TIGR00186 rRNA_methyl_3 rRNA m 70.5 13 0.00029 32.8 6.2 50 140-199 162-212 (237)
32 TIGR01769 GGGP geranylgeranylg 70.1 5.5 0.00012 35.1 3.6 42 154-199 36-77 (205)
33 PLN02726 dolichyl-phosphate be 68.8 73 0.0016 27.1 11.5 37 140-180 93-129 (243)
34 PF01380 SIS: SIS domain SIS d 66.3 39 0.00085 25.6 7.4 104 79-204 7-110 (131)
35 COG1737 RpiR Transcriptional r 66.0 1E+02 0.0022 27.8 11.8 85 134-225 171-262 (281)
36 COG2419 Uncharacterized conser 65.9 7.3 0.00016 36.9 3.7 40 131-181 165-204 (336)
37 cd05005 SIS_PHI Hexulose-6-pho 65.3 77 0.0017 26.1 10.1 82 137-225 72-168 (179)
38 TIGR00393 kpsF KpsF/GutQ famil 63.9 98 0.0021 26.8 11.4 84 136-226 43-135 (268)
39 PRK13936 phosphoheptose isomer 63.5 76 0.0016 27.1 9.3 83 134-220 105-192 (197)
40 TIGR00185 rRNA_methyl_2 rRNA m 63.4 26 0.00057 28.9 6.3 55 134-199 66-122 (153)
41 TIGR02690 resist_ArsH arsenica 62.9 44 0.00095 29.7 7.9 130 72-206 23-164 (219)
42 PRK15482 transcriptional regul 60.9 1.2E+02 0.0026 26.9 11.1 83 135-224 177-266 (285)
43 PF04452 Methyltrans_RNA: RNA 60.4 26 0.00055 30.5 6.0 78 133-215 141-222 (225)
44 COG1646 Predicted phosphate-bi 60.0 17 0.00038 33.1 4.9 39 142-186 17-55 (240)
45 TIGR00274 N-acetylmuramic acid 59.4 91 0.002 28.7 9.6 86 137-229 123-216 (291)
46 COG0566 SpoU rRNA methylases [ 57.9 17 0.00037 32.8 4.6 56 133-198 174-231 (260)
47 cd01532 4RHOD_Repeat_1 Member 55.8 13 0.00028 27.3 2.9 42 140-184 49-90 (92)
48 TIGR01768 GGGP-family geranylg 55.6 15 0.00032 32.9 3.7 45 150-199 34-79 (223)
49 PF07905 PucR: Purine cataboli 55.4 21 0.00046 28.2 4.3 80 136-219 38-121 (123)
50 cd05008 SIS_GlmS_GlmD_1 SIS (S 53.4 97 0.0021 23.5 9.7 57 137-200 43-99 (126)
51 TIGR02880 cbbX_cfxQ probable R 50.3 57 0.0012 29.5 6.7 68 143-211 123-204 (284)
52 cd01523 RHOD_Lact_B Member of 49.7 37 0.00079 25.0 4.5 45 134-184 54-98 (100)
53 PRK13937 phosphoheptose isomer 48.9 1.6E+02 0.0035 24.8 9.5 80 134-220 100-184 (188)
54 COG3618 Predicted metal-depend 48.0 97 0.0021 28.9 7.8 110 94-215 38-157 (279)
55 cd06536 CIDE_N_ICAD CIDE_N dom 47.6 32 0.00069 26.4 3.9 44 122-165 22-65 (80)
56 PRK11543 gutQ D-arabinose 5-ph 47.4 2.1E+02 0.0046 25.6 12.6 84 136-226 85-177 (321)
57 cd01444 GlpE_ST GlpE sulfurtra 46.5 47 0.001 23.9 4.6 45 134-183 49-93 (96)
58 TIGR02201 heptsyl_trn_III lipo 46.3 1.1E+02 0.0023 27.7 7.9 65 144-210 183-257 (344)
59 cd00158 RHOD Rhodanese Homolog 46.1 48 0.001 23.0 4.5 44 136-184 45-88 (89)
60 PF01746 tRNA_m1G_MT: tRNA (Gu 45.9 38 0.00082 28.5 4.6 57 141-203 55-111 (186)
61 TIGR00046 RNA methyltransferas 45.8 68 0.0015 28.3 6.3 44 172-215 185-232 (240)
62 cd06539 CIDE_N_A CIDE_N domain 45.8 60 0.0013 24.8 5.1 42 122-165 22-63 (78)
63 cd02812 PcrB_like PcrB_like pr 44.8 36 0.00077 30.4 4.4 35 144-184 3-37 (219)
64 COG1313 PflX Uncharacterized F 44.4 21 0.00046 33.8 3.0 63 149-211 144-212 (335)
65 PRK11337 DNA-binding transcrip 44.4 1.3E+02 0.0028 26.7 8.0 83 136-225 183-272 (292)
66 cd06537 CIDE_N_B CIDE_N domain 44.2 59 0.0013 25.1 4.9 41 122-165 22-62 (81)
67 PRK04169 geranylgeranylglycery 44.0 37 0.0008 30.5 4.4 44 151-199 40-84 (232)
68 TIGR02427 protocat_pcaD 3-oxoa 43.9 62 0.0014 25.7 5.4 8 176-183 82-89 (251)
69 PRK11181 23S rRNA (guanosine-2 43.8 27 0.00058 31.1 3.5 50 140-199 167-217 (244)
70 PRK11081 tRNA guanosine-2'-O-m 43.1 73 0.0016 28.5 6.1 28 172-199 112-140 (229)
71 PRK05563 DNA polymerase III su 42.9 3.5E+02 0.0075 27.2 11.4 65 141-209 119-185 (559)
72 TIGR02667 moaB_proteo molybden 42.5 52 0.0011 27.5 4.8 57 156-227 48-111 (163)
73 smart00266 CAD Domains present 41.8 49 0.0011 25.0 4.1 42 122-165 20-61 (74)
74 PF00561 Abhydrolase_1: alpha/ 41.8 26 0.00057 28.1 2.9 57 144-201 3-78 (230)
75 cd05710 SIS_1 A subgroup of th 41.6 1.6E+02 0.0036 22.7 10.0 68 137-211 44-111 (120)
76 COG1772 Uncharacterized protei 41.3 61 0.0013 28.0 5.0 46 151-201 104-150 (178)
77 smart00450 RHOD Rhodanese Homo 41.1 1.1E+02 0.0023 21.3 5.7 44 136-184 51-94 (100)
78 PRK13267 archaemetzincin-like 40.7 1.7E+02 0.0037 25.2 7.8 27 75-102 1-27 (179)
79 cd05006 SIS_GmhA Phosphoheptos 40.2 2.1E+02 0.0045 23.5 9.4 65 134-205 95-159 (177)
80 cd01522 RHOD_1 Member of the R 39.6 80 0.0017 24.3 5.2 43 138-185 61-103 (117)
81 PRK10422 lipopolysaccharide co 39.2 1.4E+02 0.003 27.3 7.4 38 143-182 184-225 (352)
82 PRK10673 acyl-CoA esterase; Pr 38.5 62 0.0013 26.9 4.7 12 130-141 70-81 (255)
83 TIGR03611 RutD pyrimidine util 38.3 80 0.0017 25.6 5.2 8 79-86 16-23 (257)
84 PRK05660 HemN family oxidoredu 38.2 3.5E+02 0.0075 25.5 10.7 98 88-193 37-137 (378)
85 PF12697 Abhydrolase_6: Alpha/ 37.7 40 0.00086 26.3 3.2 66 140-205 23-104 (228)
86 PF03266 NTPase_1: NTPase; In 37.6 78 0.0017 26.5 5.2 53 141-194 95-150 (168)
87 COG1303 Uncharacterized protei 37.6 2.1E+02 0.0045 25.1 7.7 114 80-218 35-148 (179)
88 cd00886 MogA_MoaB MogA_MoaB fa 37.5 92 0.002 25.4 5.5 55 157-226 47-107 (152)
89 cd01448 TST_Repeat_1 Thiosulfa 37.4 1.3E+02 0.0029 22.7 6.1 43 138-184 76-118 (122)
90 COG1385 Uncharacterized protei 36.6 71 0.0015 28.8 5.0 76 133-213 157-237 (246)
91 cd05007 SIS_Etherase N-acetylm 36.1 2.1E+02 0.0045 25.7 7.9 86 137-229 115-208 (257)
92 cd01615 CIDE_N CIDE_N domain, 35.4 93 0.002 23.7 4.7 42 122-165 22-63 (78)
93 TIGR03695 menH_SHCHC 2-succiny 34.7 1.1E+02 0.0024 24.1 5.4 22 132-157 61-82 (251)
94 PF00581 Rhodanese: Rhodanese- 34.3 74 0.0016 23.0 4.1 51 131-183 57-109 (113)
95 TIGR02069 cyanophycinase cyano 34.3 3.4E+02 0.0074 24.3 9.4 9 173-181 84-92 (250)
96 cd01528 RHOD_2 Member of the R 34.2 50 0.0011 24.4 3.1 44 139-187 56-99 (101)
97 PRK07428 nicotinate-nucleotide 33.9 2.7E+02 0.0059 25.8 8.5 61 139-203 214-275 (288)
98 KOG2506 SpoU rRNA Methylase fa 33.9 30 0.00064 33.2 2.2 30 157-193 311-341 (371)
99 PF04122 CW_binding_2: Putativ 33.7 1.3E+02 0.0028 22.1 5.3 42 142-190 50-91 (92)
100 PF03358 FMN_red: NADPH-depend 32.5 1.7E+02 0.0037 23.0 6.2 88 76-166 1-96 (152)
101 PF13173 AAA_14: AAA domain 32.3 77 0.0017 24.6 4.1 67 133-204 53-125 (128)
102 COG0528 PyrH Uridylate kinase 32.2 77 0.0017 28.9 4.5 38 143-181 6-54 (238)
103 PRK13660 hypothetical protein; 31.6 36 0.00078 29.6 2.2 73 132-208 33-120 (182)
104 PF01936 NYN: NYN domain; Int 31.4 1.3E+02 0.0027 23.3 5.2 67 123-198 79-145 (146)
105 PRK07896 nicotinate-nucleotide 31.0 3.5E+02 0.0077 25.1 8.8 60 138-203 216-278 (289)
106 PRK02947 hypothetical protein; 30.9 2.7E+02 0.0058 24.7 7.7 80 136-219 102-204 (246)
107 TIGR00288 conserved hypothetic 30.7 1.5E+02 0.0032 25.4 5.7 66 125-199 91-156 (160)
108 PF06908 DUF1273: Protein of u 30.2 35 0.00076 29.3 1.9 13 189-201 99-111 (177)
109 PRK10864 putative methyltransf 30.0 1.2E+02 0.0026 28.9 5.6 28 172-199 291-319 (346)
110 PRK03692 putative UDP-N-acetyl 29.9 4.1E+02 0.0089 23.8 9.3 112 77-220 105-219 (243)
111 PF01729 QRPTase_C: Quinolinat 29.5 3.5E+02 0.0076 22.9 8.5 59 140-202 99-158 (169)
112 cd00860 ThrRS_anticodon ThrRS 29.5 1.6E+02 0.0034 20.8 5.1 47 129-181 15-61 (91)
113 TIGR01485 SPP_plant-cyano sucr 29.5 93 0.002 26.9 4.5 10 145-154 4-13 (249)
114 PF08672 APC2: Anaphase promot 29.4 34 0.00075 24.5 1.5 32 148-182 27-58 (60)
115 cd03227 ABC_Class2 ABC-type Cl 29.4 3E+02 0.0065 22.2 7.3 56 141-202 99-157 (162)
116 PF03129 HGTP_anticodon: Antic 29.3 1.6E+02 0.0034 21.3 5.1 47 128-180 15-61 (94)
117 TIGR03469 HonB hopene-associat 28.6 4.8E+02 0.01 24.2 10.9 91 78-170 71-162 (384)
118 PRK03892 ribonuclease P protei 28.4 3.9E+02 0.0085 24.1 8.2 74 127-211 47-126 (216)
119 cd01521 RHOD_PspE2 Member of t 27.9 1.8E+02 0.0038 21.9 5.3 45 135-183 58-102 (110)
120 TIGR02240 PHA_depoly_arom poly 27.9 1.2E+02 0.0025 26.1 4.8 81 95-180 41-125 (276)
121 PRK05342 clpX ATP-dependent pr 27.9 1.7E+02 0.0038 28.3 6.4 11 172-182 237-247 (412)
122 PF08149 BING4CT: BING4CT (NUC 27.4 68 0.0015 24.7 2.8 25 123-149 56-80 (80)
123 cd00561 CobA_CobO_BtuR ATP:cor 27.4 3.8E+02 0.0082 22.6 9.3 51 141-196 95-150 (159)
124 PRK07940 DNA polymerase III su 27.3 3.9E+02 0.0084 25.7 8.6 68 143-215 119-188 (394)
125 PRK13915 putative glucosyl-3-p 27.3 4.8E+02 0.01 23.8 11.7 103 74-179 29-152 (306)
126 PRK10466 hybD hydrogenase 2 ma 27.0 2.4E+02 0.0052 23.4 6.4 25 76-100 1-27 (164)
127 PRK05441 murQ N-acetylmuramic 27.0 4.6E+02 0.01 24.1 8.8 84 138-228 129-220 (299)
128 PRK07414 cob(I)yrinic acid a,c 27.0 3.5E+02 0.0075 23.5 7.5 55 136-195 109-169 (178)
129 PRK14717 putative glycine/sarc 26.9 64 0.0014 26.0 2.7 40 169-211 16-55 (107)
130 cd01525 RHOD_Kc Member of the 26.9 1.1E+02 0.0024 22.4 4.0 39 141-184 65-103 (105)
131 PF08030 NAD_binding_6: Ferric 26.7 37 0.0008 26.8 1.4 36 157-192 119-155 (156)
132 cd01527 RHOD_YgaP Member of th 26.6 1.7E+02 0.0036 21.3 4.9 41 138-183 51-91 (99)
133 PF12847 Methyltransf_18: Meth 26.4 2.5E+02 0.0053 20.4 5.8 72 140-219 24-100 (112)
134 cd01529 4RHOD_Repeats Member o 26.3 1.6E+02 0.0036 21.3 4.8 43 137-184 52-94 (96)
135 cd00861 ProRS_anticodon_short 26.2 99 0.0021 22.2 3.5 47 129-181 18-64 (94)
136 COG1809 (2R)-phospho-3-sulfola 26.2 83 0.0018 28.9 3.6 76 90-172 87-168 (258)
137 smart00775 LNS2 LNS2 domain. T 26.1 87 0.0019 25.9 3.5 33 153-186 26-58 (157)
138 PRK11713 16S ribosomal RNA met 26.0 1.4E+02 0.0029 26.3 4.9 45 172-216 178-226 (234)
139 PRK03204 haloalkane dehalogena 25.9 2.1E+02 0.0045 25.1 6.1 21 133-157 93-113 (286)
140 PRK13938 phosphoheptose isomer 25.8 4.4E+02 0.0094 22.8 9.1 82 131-219 104-190 (196)
141 cd04795 SIS SIS domain. SIS (S 25.7 2.3E+02 0.0049 19.7 5.3 35 135-172 42-76 (87)
142 cd01518 RHOD_YceA Member of th 25.3 1.3E+02 0.0027 22.2 4.0 40 139-183 59-98 (101)
143 PRK13279 arnT 4-amino-4-deoxy- 25.0 70 0.0015 32.2 3.3 55 148-202 492-546 (552)
144 cd06535 CIDE_N_CAD CIDE_N doma 25.0 1.4E+02 0.003 22.8 4.1 41 122-165 22-62 (77)
145 COG2120 Uncharacterized protei 24.8 2.2E+02 0.0047 25.2 6.0 108 77-188 10-128 (237)
146 PRK12570 N-acetylmuramic acid- 24.5 5.2E+02 0.011 23.8 8.6 85 137-228 124-216 (296)
147 PF02639 DUF188: Uncharacteriz 24.3 1.2E+02 0.0026 24.8 4.0 42 145-191 72-119 (130)
148 TIGR02881 spore_V_K stage V sp 24.1 4.9E+02 0.011 22.8 11.3 66 143-210 107-186 (261)
149 PTZ00233 variable surface prot 24.1 28 0.00062 34.9 0.3 20 23-42 454-473 (509)
150 PRK10358 putative rRNA methyla 24.0 1.8E+02 0.004 24.2 5.1 46 142-198 73-122 (157)
151 PRK00109 Holliday junction res 23.9 3.7E+02 0.0081 21.9 6.9 33 77-109 54-91 (138)
152 PLN03034 phosphoglycerate kina 23.8 2E+02 0.0044 28.8 6.1 44 164-207 259-307 (481)
153 PRK14952 DNA polymerase III su 23.6 7.4E+02 0.016 25.3 10.2 61 140-203 117-179 (584)
154 PF02017 CIDE-N: CIDE-N domain 23.2 46 0.001 25.3 1.2 42 122-165 22-63 (78)
155 PRK02731 histidinol-phosphate 23.2 3.6E+02 0.0078 24.3 7.3 64 139-218 301-365 (367)
156 PF04723 GRDA: Glycine reducta 23.1 1.1E+02 0.0024 26.0 3.6 39 169-210 64-102 (150)
157 PRK04296 thymidine kinase; Pro 22.9 2.8E+02 0.0062 23.2 6.2 56 143-202 80-143 (190)
158 PF01287 eIF-5a: Eukaryotic el 22.8 1.4E+02 0.0029 22.0 3.6 35 140-175 14-53 (69)
159 PF09566 RE_SacI: SacI restric 22.7 4.1E+02 0.0089 25.7 7.7 81 140-220 244-333 (351)
160 PF04252 RNA_Me_trans: Predict 22.2 61 0.0013 28.7 1.9 36 140-186 61-97 (196)
161 cd01491 Ube1_repeat1 Ubiquitin 22.2 1.7E+02 0.0038 26.9 5.0 71 92-188 75-145 (286)
162 PRK00124 hypothetical protein; 22.1 3.1E+02 0.0067 23.2 6.1 42 145-191 88-135 (151)
163 COG1618 Predicted nucleotide k 22.1 2.8E+02 0.006 24.4 5.9 45 133-179 93-138 (179)
164 COG0167 PyrD Dihydroorotate de 21.9 2.4E+02 0.0051 26.6 5.9 143 20-170 35-186 (310)
165 PRK10886 DnaA initiator-associ 21.8 5.3E+02 0.011 22.3 9.6 85 131-219 100-189 (196)
166 PF00994 MoCF_biosynth: Probab 21.7 2.1E+02 0.0047 22.7 5.0 58 155-227 42-103 (144)
167 cd01447 Polysulfide_ST Polysul 21.6 1.5E+02 0.0033 21.4 3.8 42 138-184 58-99 (103)
168 PRK11302 DNA-binding transcrip 21.5 5.5E+02 0.012 22.4 12.1 83 136-226 171-260 (284)
169 PF01402 RHH_1: Ribbon-helix-h 21.4 56 0.0012 20.3 1.2 18 84-101 22-39 (39)
170 PRK07003 DNA polymerase III su 21.4 8.1E+02 0.018 26.4 10.1 67 141-210 119-187 (830)
171 COG1432 Uncharacterized conser 21.0 1.9E+02 0.0042 24.5 4.8 53 141-201 111-163 (181)
172 PF01884 PcrB: PcrB family; I 20.9 1.3E+02 0.0029 27.1 3.9 34 142-182 9-42 (230)
173 COG4240 Predicted kinase [Gene 20.8 2.1E+02 0.0045 26.8 5.1 57 158-216 35-104 (300)
174 TIGR01250 pro_imino_pep_2 prol 20.8 1.8E+02 0.004 23.7 4.5 11 130-140 85-95 (288)
175 cd06167 LabA_like LabA_like pr 20.8 2.4E+02 0.0051 22.1 5.0 47 141-195 100-146 (149)
176 TIGR01459 HAD-SF-IIA-hyp4 HAD- 20.7 3.3E+02 0.0071 23.5 6.3 66 143-209 9-81 (242)
177 PRK14101 bifunctional glucokin 20.7 8.8E+02 0.019 24.5 12.3 84 136-227 511-601 (638)
178 TIGR00740 methyltransferase, p 20.7 5.4E+02 0.012 22.0 7.9 81 132-221 69-152 (239)
179 KOG2440 Pyrophosphate-dependen 20.6 1.9E+02 0.0042 30.1 5.4 59 134-194 196-260 (666)
180 KOG4520 Predicted coiled-coil 20.6 2.8E+02 0.0061 25.0 5.8 82 50-165 26-107 (238)
181 PRK05463 hypothetical protein; 20.6 97 0.0021 28.7 3.0 98 76-192 32-129 (262)
182 PRK14556 pyrH uridylate kinase 20.3 1E+02 0.0023 28.0 3.1 37 144-181 17-64 (249)
183 PRK04195 replication factor C 20.2 8E+02 0.017 23.8 10.0 62 141-204 98-163 (482)
184 TIGR00708 cobA cob(I)alamin ad 20.1 3E+02 0.0065 23.6 5.7 53 141-198 97-154 (173)
185 PRK08775 homoserine O-acetyltr 20.0 1.7E+02 0.0037 26.4 4.5 42 142-183 100-148 (343)
No 1
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=100.00 E-value=1.3e-62 Score=410.81 Aligned_cols=154 Identities=35% Similarity=0.616 Sum_probs=129.4
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCC-CCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~-~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
|||+|++|||++++|++++++||.|||++|+++|++|+++.+. ...+.+..+++|+++|++++++++++|+||++||++
T Consensus 1 Mki~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~ 80 (155)
T PF02590_consen 1 MKIRIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQL 80 (155)
T ss_dssp -EEEEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE-
T ss_pred CEEEEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccC
Confidence 9999999999999999999999999999999999999997653 335677789999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYH 229 (230)
||++||++|++|+++|.++++|+||||+|++++++++||.+||||+||||||||||||+|||||||||++|||||
T Consensus 81 sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~larlvL~EQiYRA~tI~~g~PYH 155 (155)
T PF02590_consen 81 SSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLARLVLLEQIYRAFTILNGHPYH 155 (155)
T ss_dssp -HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHHHHHHHHHHHHHHHHTT-TT-
T ss_pred ChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=100.00 E-value=5.8e-62 Score=407.76 Aligned_cols=155 Identities=31% Similarity=0.566 Sum_probs=147.0
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCC-CcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT-GDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~-~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
|||+|++|||++++|+++++++|.||+++||+++++|+++.+... .+.+..+++|+++|++++++++++|+||++||++
T Consensus 1 Mki~I~~vGk~k~~~~~~~i~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~LDe~Gk~~ 80 (157)
T PRK00103 1 MKITIIAVGKLKPKWLKDGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIALDERGKQL 80 (157)
T ss_pred CeEEEEEEeccCcHHHHHHHHHHHHhcCccCCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCcC
Confidence 899999999999999999999999999999999999998654322 3456678999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYHk 230 (230)
||++||++|++|++.|.++++|+||||+|++++++++||..||||+||||||||||||+||||||+||++||||||
T Consensus 81 sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~EQlYRa~tIl~g~PYHk 156 (157)
T PRK00103 81 SSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVRVLLAEQLYRAWSILAGHPYHR 156 (157)
T ss_pred CHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 9999999999999999889999999999999999999999999999999999999999999999999999999997
No 3
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.7e-62 Score=406.98 Aligned_cols=154 Identities=33% Similarity=0.573 Sum_probs=148.1
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCC-CCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~-~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
|||+|++|||.+++|++++++||.||+++||++|++|+++.+.. ..+.+.++++|+++|++++++++++|+||++||.+
T Consensus 1 Mki~iiaVGk~~~~~~~~g~~eY~KR~~~~~~leliei~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~vi~Ld~~Gk~~ 80 (155)
T COG1576 1 MKINIIAVGKKKPKYVKDGIAEYLKRFPRYLKLELIEIPEEKRGKNASAELIKKKEGEAILAAIPKGSYVVLLDIRGKAL 80 (155)
T ss_pred CeEEEEEeeccchHHHHHHHHHHHHHhccccCceEEecCCccCccccCHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcC
Confidence 99999999999999999999999999999999999999976543 24577899999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYHk 230 (230)
|||+||+.|++|++.| ++|+|+||||+|++++++++||+.||||+|||||||+||||+|||||||||++||||||
T Consensus 81 sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl~~~~~~~a~~~~sls~lT~PHql~rlvL~EQiYRA~sI~~ghpYHk 155 (155)
T COG1576 81 SSEEFADFLERLRDDG-RDISFLIGGADGLSEAVKARADQVLSLSKLTLPHQLVRLVLAEQIYRAFSILNGHPYHK 155 (155)
T ss_pred ChHHHHHHHHHHHhcC-CeEEEEEeCcccCCHHHHHHHhhheecccccchhHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999997
No 4
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=100.00 E-value=8.5e-61 Score=399.41 Aligned_cols=152 Identities=26% Similarity=0.472 Sum_probs=142.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCC-CcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT-GDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 77 kI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~-~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
||+|++|||++++|+++++++|.||+++|++++++|+++.+... .+.+.++++|+++|+++++ ++++|+||++|+++|
T Consensus 1 ki~I~~vGk~k~~~~~~~i~~Y~kRl~~~~~~ei~el~~~~~~~~~~~~~~~~~E~~~il~~~~-~~~~i~LDe~Gk~~s 79 (153)
T TIGR00246 1 KINLVAVGTKKPKWVKTGFEEYTRRFPKDAPFELIEIPAGKRGKNADIKRILDKEGDRILAAIG-KAHVVTLDIPGKPWT 79 (153)
T ss_pred CEEEEEEeccCcHHHHHHHHHHHHhcCCcCCeEEEEeCCccccccccHHHHHHHHHHHHHHhCC-CCeEEEEcCCCCcCC
Confidence 68999999999999999999999999999999999998655322 2455678999999999998 699999999999999
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037057 156 SEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYHk 230 (230)
|++||++|++|++.| ++++|+||||+|++++++++||..||||+||||||||||||+||||||+||++||||||
T Consensus 80 S~~fA~~l~~~~~~g-~~i~FvIGGa~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~EQiYRA~tIl~g~PYHk 153 (153)
T TIGR00246 80 TPQLADTLEKWKTDG-RDVTLLIGGPEGLSPTCKAAAEQSWSLSKLTLPHPLVRVIVAESLYRAWSITTNHPYHR 153 (153)
T ss_pred HHHHHHHHHHHhccC-CeEEEEEcCCCcCCHHHHHhcCceEEeecCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999988 58999999999999999999999999999999999999999999999999999999997
No 5
>PRK04171 ribosome biogenesis protein; Provisional
Probab=97.07 E-value=0.0028 Score=56.57 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=54.9
Q ss_pred HHhhcCCC--CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCC-CCHHHHhcccceEEeecCCCcHHHHH
Q 037057 134 VMNIISSD--DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYG-HGPKMRERANISIKLSSMVLNHQIAL 209 (230)
Q Consensus 134 Il~~i~~~--~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~G-ls~~v~~rAd~~LSLS~mTfpHqLaR 209 (230)
+...++++ +.+|+|++.|+..+-.+|++ ....++|+||| |+| ++.++.+.+|..+|+|.-.++.-.+-
T Consensus 137 l~~~l~~~~~~~~i~lS~~g~~~~~~~~~~--------~~~~~~~vIGaf~hG~f~~~~~~~~~~~iSIs~~pLsa~~v~ 208 (222)
T PRK04171 137 LEELLEEIGPDRIILLSEKGELVKPKELGK--------ENENIAVGIGGFPHGDFSEKVLELAKKKYSIYGEPLTAWTVV 208 (222)
T ss_pred HHHhccccCCCcEEEECCCCcccCHHHHhh--------ccCCcEEEEccccCCCcchhhHhhcCeEEEEeCCChHHHHHH
Confidence 44566766 78999999999999888887 12469999999 888 46777888999999998888766543
No 6
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis. They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.
Probab=96.36 E-value=0.0033 Score=55.22 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=47.0
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCC-HH-HHhcccceEEeecCCCcHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHG-PK-MRERANISIKLSSMVLNHQI 207 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls-~~-v~~rAd~~LSLS~mTfpHqL 207 (230)
+-..+++++.+|+|+++|+.++-.+|++ .....+..+++|+||| |+|-. ++ -...|++.+|+|+-.++-..
T Consensus 119 l~~~l~~~~~~i~ls~~g~~~~~~~~~~---~~~~~~~~~~~~~IGaf~~Gdf~~~~~~~~~~~~~sIs~~~Lsa~~ 192 (202)
T PF03587_consen 119 LTDLLPPGSRKILLSEKGEKVDPKELVK---EALLAGDEPVVFVIGAFPHGDFSEEVDYVEADEEISISDYPLSAWT 192 (202)
T ss_dssp HHHHCCCTCEEEEEETTSCEE-HHHHCC-----TS-TTCCEEEEEE-SSSS-SCCCCCCHSCEEEEESSSS---HHH
T ss_pred HHHhcCCCCeEEEEcCCCCcCCHHHHHh---hhhccCCCCeEEEEeeecCCCCcccccccccceEEEEeCCChHHHH
Confidence 4567888899999999999998888887 1112234679999999 88882 22 34445588999988776544
No 7
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.051 Score=49.08 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=63.1
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
+..+|+|+++|+.+|- +.|+.|.+ ..+++|+-|==.|+++.+.+ ..|+.+|+++..++ =|++-+++++-+.|
T Consensus 79 ~~~vi~lsP~G~~f~Q-~~a~eLa~-----~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGDyVLtGGEl~AmvliDav~R 152 (240)
T COG0336 79 KAKVILLSPQGKPFTQ-ARARELAK-----EEHLVLICGRYEGIDERVIELYVDEEISIGDYVLTGGELAAMVLIDAVVR 152 (240)
T ss_pred CCeEEEECCCCCccCH-HHHHHHhc-----CCCEEEEeccccchhHHHHhhccceEEeeccEEecCccHHHHHHHHHHHH
Confidence 5789999999999875 55666654 25899999999999999996 89999999999998 48999999999888
Q ss_pred H
Q 037057 219 S 219 (230)
Q Consensus 219 A 219 (230)
-
T Consensus 153 l 153 (240)
T COG0336 153 L 153 (240)
T ss_pred h
Confidence 4
No 8
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.02 Score=50.26 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=47.5
Q ss_pred HHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHH----HhcccceEEeecCCC
Q 037057 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM----RERANISIKLSSMVL 203 (230)
Q Consensus 132 e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v----~~rAd~~LSLS~mTf 203 (230)
|.++..+....-++.|+|+|+.+++.++ ..+.+||+|-..|++++- .+.++.++|+||..+
T Consensus 115 e~ll~~l~~~~~ly~L~E~G~DI~~v~~-----------~~np~FIlGDH~g~t~e~~k~L~r~~~~~ISlGP~~l 179 (197)
T COG1901 115 EALLAELAEGRSLYYLHEDGRDISEVDL-----------IPNPVFILGDHIGLTEEDEKLLERHAAKKISLGPLSL 179 (197)
T ss_pred HHHHHHHhccCcEEEEccCCccHhhccc-----------CCCceEEeeCCCCCCHHHHHHHHHhhCceeEeCchHH
Confidence 3455666555669999999999888766 257999999999999764 345777899999754
No 9
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=95.35 E-value=0.088 Score=47.77 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=62.3
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
+..+|.|.++|+.++-. .|+.|.+ ..+++|+-|==.|+++.+.+ .+|+.+|+++..++ =|++-+++++-+-|
T Consensus 81 ~~~vi~lsP~G~~f~Q~-~a~~ls~-----~~~lillCGrYEGiDeRv~~~~vdeeiSiGDyVLtGGElaAmv~iDav~R 154 (244)
T PRK00026 81 KAKVILLSPQGKPFTQA-DARELAK-----EEHLILLCGRYEGIDERVIEHYVDEEISIGDYVLTGGELAAMVLIDAVVR 154 (244)
T ss_pred CCeEEEECCCCCcCCHH-HHHHHhC-----CCCEEEEeccccChHHHHHhhhCcEEEeeccEEecCchHHHHHHHHHHHH
Confidence 46899999999999864 4666654 24799999999999999998 68999999999998 58999999998877
No 10
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=94.76 E-value=0.16 Score=45.91 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=61.9
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
+..+|.|.++|+.++-. .|+.|.+ ..+++|+-|==.|+++.+.+ -+|+.+|+++..++ =|++-+++++-+-|
T Consensus 78 ~~~vi~lsP~G~~f~Q~-~a~ela~-----~~~lillCGrYEGiDeRi~~~~vdeeiSIGDyVLtGGElaAmviiDav~R 151 (233)
T TIGR00088 78 AGTVILLSPQGRKFDQA-GARELAQ-----NEHLILICGRYEGFDERIIQLEVDEEISIGDFVLTGGELPALTLIDSVVR 151 (233)
T ss_pred CCcEEEECCCCCcCCHH-HHHHHhC-----CCCEEEEeccccCcHHHHHhccCcEEEeeccEEecCchHHHHHHHHHHHH
Confidence 35799999999999864 4666653 25799999999999999998 69999999999987 58999999998877
No 11
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=94.58 E-value=0.18 Score=45.14 Aligned_cols=73 Identities=15% Similarity=0.345 Sum_probs=61.8
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
+..+|.|.++|+.++- +.|+.|.+. ..+++|+-|==.|+++.+.+ .+|+.+|+++..++ =|+|-+++++-+-|
T Consensus 78 ~~~vi~lsP~G~~f~Q-~~a~eLa~~----~~~liliCGrYEGiDeRv~~~~vdeEiSIGDyVLtGGElaAmv~iDav~R 152 (222)
T PRK14599 78 KGIVILTSPSGIPFNQ-TIARELKES----GKPLTFISGYYEGVDHRVTEHLVDMEMSLGNYVISAGDLASICIADAVSR 152 (222)
T ss_pred CCcEEEECCCCCccCH-HHHHHHHhC----CCCEEEEeccccCcHHHHHhhhCcEEEeeccEEecCchHHHHHHHHHHHH
Confidence 4579999999999875 556666531 24799999999999999998 79999999999987 58999999998877
No 12
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=93.96 E-value=0.25 Score=47.05 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=62.0
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
+..+|.|.++|+.++-. .|+.|.+ ..+|+|+-|==.|+++.+++ .+|+.+|+++..++ =|++-+++++-+-|
T Consensus 77 ~~~vi~lsP~G~~f~Q~-~a~ela~-----~~~liliCGrYEGiDeRv~~~~vdeeiSIGDyVLtGGElaAmv~iDav~R 150 (357)
T PRK01037 77 KSKVIYLSPQGQLLTAK-KSRELAS-----CSHLILLCGHYEGIDERALESEVDEEISIGDYVLTNGGIAALVLIDALSR 150 (357)
T ss_pred CCcEEEECCCCCcCCHH-HHHHHhC-----CCCEEEEeccccCchHHHHhccCceEEeeccEEecCchHHHHHHHHHHHH
Confidence 45799999999999864 4666654 25799999999999999998 79999999999987 48999999998877
No 13
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=93.86 E-value=0.18 Score=43.49 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=55.1
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec-CCCcHHHHHHHHHH
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS-MVLNHQIALLVLVE 214 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~-mTfpHqLaRLILlE 214 (230)
.+..+|+.|+.|+.+|- .++.|.+.... .++++.+||.-.|+..-+..-||+.+-|-| |||.-+-+---.+.
T Consensus 92 ~~~~lIvtdPkG~~is~--vk~~L~~~~r~-~~eV~v~iGSReGiP~GlfRfAd~VvDlaP~~t~aTe~~ipsali 164 (173)
T PF14419_consen 92 KGEPLIVTDPKGDPISE--VKDKLAEDLRY-AKEVVVFIGSREGIPRGLFRFADYVVDLAPGVTFATEHAIPSALI 164 (173)
T ss_pred CCCeEEEECCCCCcHHH--HHHHHHHHHhh-CcEEEEEEEcccCCChhHHHHhhhhhhcCCceEEeehhhhHHHHH
Confidence 57889999999999874 34444443323 358999999999999999999999999987 88876655443333
No 14
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.17 Score=45.29 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=46.8
Q ss_pred HhhcCCC-CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEeecCCCcH
Q 037057 135 MNIISSD-DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLSSMVLNH 205 (230)
Q Consensus 135 l~~i~~~-~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS~mTfpH 205 (230)
-..+++. +..|+|++.|+.+.+.+|.+.+.++ ++++||| |+|=..+=-..-+.+.|+|.--+.-
T Consensus 140 ~d~l~~~~~~~ill~e~G~~~~p~~~~~~l~~~-------i~v~iG~fp~Gdf~~~~~~~~~~~si~~~pL~a 205 (223)
T COG1756 140 TDLLPENNKVTILLHEKGELIPPKELISLLLKG-------IAVIIGGFPHGDFREETEFVAEKYSIYDEPLSA 205 (223)
T ss_pred HHhccccCceEEEEcCCCCccCHHHHHhhhccC-------ceEEEeccCCCcchhhhhhhcceeeecCCCccH
Confidence 3445555 4899999999999999999988764 8888888 7875543333333788888766543
No 15
>PRK02135 hypothetical protein; Provisional
Probab=92.41 E-value=0.19 Score=44.41 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=44.6
Q ss_pred HHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHH---H-hcccceEEeecCCC
Q 037057 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM---R-ERANISIKLSSMVL 203 (230)
Q Consensus 132 e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v---~-~rAd~~LSLS~mTf 203 (230)
+.+++.+..+.-++.|||+|+.+...+| ..+.+||.|-..|++++- + +.++.++|||+..+
T Consensus 117 e~ll~~~~e~~~l~~L~e~G~~i~~~~~-----------~~~~~FvLgDH~~~~~ee~~~L~~~ga~~iSlGP~~l 181 (201)
T PRK02135 117 EDLLEELAEGKTLYYLHEDGEDIRDVEF-----------PENPVFVLGDHIGFTEEEENLLKRLGAEKISLGPKML 181 (201)
T ss_pred HHHHHHHhcCCcEEEEeCCCCchhhccC-----------CCCCEEEEeCCCCCCHHHHHHHHHhCCeEEEeCcHHH
Confidence 4555556566779999999999773222 246789999999998654 3 34578999998653
No 16
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=92.37 E-value=0.1 Score=46.06 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=42.2
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHH---HHhc-ccceEEeecCCC
Q 037057 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK---MRER-ANISIKLSSMVL 203 (230)
Q Consensus 131 ~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~---v~~r-Ad~~LSLS~mTf 203 (230)
=+.+++.+..+.-++.|||+|+.+...+|... +.+||.|-..|++++ ++++ ++.++||||..+
T Consensus 115 fe~ll~~~~~~~~l~~L~e~G~di~~~~~~~~----------d~~FVLgDH~g~~~eee~~L~~~~a~kiSlGP~~l 181 (199)
T PF04013_consen 115 FEDLLEELAEEYPLYYLHEDGEDIRDVEFPGN----------DPVFVLGDHIGFTEEEEELLERLGAEKISLGPKSL 181 (199)
T ss_dssp HHHHHHHHHCTSEEEEESTTSEEGGGS---S-----------SEEEEEE-TT-SHHHHHHHHHCTTSEEEES-SS--
T ss_pred HHHHHHHHhcCCcEEEEcCCCCcHhhcccCCC----------CCeEEEeCCCCCCHHHHHHHHHccCceEEeCCHHH
Confidence 34556666555779999999999887776531 699999999999955 3444 489999999875
No 17
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=87.89 E-value=0.41 Score=38.37 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
+..++..+.+|+.+... ++ .++++|++|+ ..|+++++++.||..+++
T Consensus 75 g~~i~~~~~~~~~~~~~-------~~----~~~~~lv~G~E~~Gls~~~~~~~d~~v~I 122 (142)
T PF00588_consen 75 GYTIVATSPGATPLYEL-------DF----PKKVALVFGNESRGLSEEVLELCDHRVSI 122 (142)
T ss_dssp TEEEEEESTTSCEGGGS-------HT----TSSEEEEEEBTTTBS-HHHHHTSSEEEE-
T ss_pred ccccceeeecccccccc-------cc----ccceEEEEcCcCCCCCcccccccceEEEE
Confidence 34578888877766622 22 1579999999 699999999999988876
No 18
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins.
Probab=87.29 E-value=1.7 Score=37.53 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=37.6
Q ss_pred CCCCCCChHHHHHHHhhhhhcCCceEEEEEe-CCCCCCHHHHhcccceEEee
Q 037057 149 ENGLDIGSEQMAELMGDAGSTGASRISFCIG-GPYGHGPKMRERANISIKLS 199 (230)
Q Consensus 149 e~Gk~lsS~efA~~L~~~~~~G~~~i~FiIG-Ga~Gls~~v~~rAd~~LSLS 199 (230)
.+.|.++++|.|+.+-+ + +.+.|+|| |-.||..++.+.|.+-|-+.
T Consensus 102 d~~K~i~p~e~a~~~l~----~-~s~~~liGLGR~GLPkei~k~a~yHLDIT 148 (173)
T PF04407_consen 102 DEKKAISPEEVAEMALR----G-KSFLLLIGLGRHGLPKEIFKMAKYHLDIT 148 (173)
T ss_pred CCCCCCCHHHHHHHHhc----C-CceEEEEecCCCCCcHHHHHhchhceeec
Confidence 45788999999987643 2 46999999 89999999999998877544
No 19
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=86.73 E-value=1.4 Score=39.61 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=52.1
Q ss_pred hhcCCCCeEEEEeCCCCCCC-hHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEeecCCCcHHHHHHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIG-SEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLSSMVLNHQIALLVLV 213 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~ls-S~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILl 213 (230)
..+|.++.-|.|.-+|..++ +.++-.-+.+ + ..+||+||+ ++| .-..+-+|+.+|+|+.-++-.++=-=++
T Consensus 154 dHlPv~~~Ki~lSf~~p~l~~~~~lv~~~~~----~-~~~v~~Iga~ahg--~~~~ey~de~vsiSnYpLSaa~~CsKi~ 226 (236)
T KOG3073|consen 154 DHLPVNSRKIGLSFSGPKLSNVRDLVASLDD----D-DSVVFVIGAMAHG--KISVEYVDEKVSISNYPLSAALCCSKIT 226 (236)
T ss_pred ccCCCCccEEeecCCCcccccHHhhccccCC----C-CCEEEEEeccccc--ccchhhhhhhcccccCcCcHHHHHHHHH
Confidence 45678999999999999998 7776555543 2 359999986 888 2223457889999999888777644333
No 20
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=85.71 E-value=14 Score=28.39 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=52.9
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee---c------CCCcHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS---S------MVLNHQ 206 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS---~------mTfpHq 206 (230)
..+++++.+|++...|+.-+..+.++...+ .|. .++-+.+.++ ..+.+.||..+..+ . -.+.=.
T Consensus 43 ~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~---~g~-~vi~iT~~~~---s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ 115 (128)
T cd05014 43 GMVTPGDVVIAISNSGETDELLNLLPHLKR---RGA-PIIAITGNPN---STLAKLSDVVLDLPVEEEACPLGLAPTTST 115 (128)
T ss_pred CcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-eEEEEeCCCC---CchhhhCCEEEECCCCcccccCCCCchHHH
Confidence 346788999999999987777777766654 453 4666665443 44666788877653 1 135566
Q ss_pred HHHHHHHHHHHH
Q 037057 207 IALLVLVEQLYR 218 (230)
Q Consensus 207 LaRLILlEQIYR 218 (230)
++-++++|.||=
T Consensus 116 ~~~~~~~d~l~~ 127 (128)
T cd05014 116 TAMLALGDALAV 127 (128)
T ss_pred HHHHHHHHHHhh
Confidence 888999999984
No 21
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=83.27 E-value=1.2 Score=36.70 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=48.1
Q ss_pred eEEEEeCCCCCC-C---hHHHHHHHhhhhhc--CCceEEEEE-eCCCCCCHH-------HHhcccceEEeecCCCcHHHH
Q 037057 143 WVVMLDENGLDI-G---SEQMAELMGDAGST--GASRISFCI-GGPYGHGPK-------MRERANISIKLSSMVLNHQIA 208 (230)
Q Consensus 143 ~vIlLDe~Gk~l-s---S~efA~~L~~~~~~--G~~~i~FiI-GGa~Gls~~-------v~~rAd~~LSLS~mTfpHqLa 208 (230)
.+|++|+=-... . -.+|...|.+..+. ...++++|+ |++.++..+ ...++.. +-+.+|+..+-..
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~ 198 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEARE 198 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHH
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHH
Confidence 899999988877 3 35666666655554 223455544 555555544 5566766 9999998665433
Q ss_pred HHHH-----------HHHHHHHHHHhcCCCC
Q 037057 209 LLVL-----------VEQLYRSWTILKGQNY 228 (230)
Q Consensus 209 RLIL-----------lEQIYRA~tIl~g~PY 228 (230)
-+-- -|.+-+.+.+..|+||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 199 FLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 2222 4667788888899986
No 22
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=78.60 E-value=8.5 Score=34.55 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCCeEEEEeCCCCCC-----ChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEee------cCCCcHHH
Q 037057 140 SDDWVVMLDENGLDI-----GSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLS------SMVLNHQI 207 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~l-----sS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS------~mTfpHqL 207 (230)
...++|..+.++... +..+++........ ...+++|.|. ..|++++.++.||..+++- .|-..| =
T Consensus 72 ~~~~vvatt~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~alVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNla~-A 148 (245)
T PRK15114 72 GCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA--NAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAM-A 148 (245)
T ss_pred cCCEEEEEcCCccCCcccccCHHHHHHHHHhhcc--CCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCcccHHH-H
Confidence 345799999887643 45566655443322 2469999999 6899999999999988753 233333 3
Q ss_pred HHHHHHHHHHHHH
Q 037057 208 ALLVLVEQLYRSW 220 (230)
Q Consensus 208 aRLILlEQIYRA~ 220 (230)
+-|++.| ++++.
T Consensus 149 vaI~lYE-~~~~~ 160 (245)
T PRK15114 149 VQVIAYE-VRMAW 160 (245)
T ss_pred HHHHHHH-HHHHh
Confidence 4566677 87764
No 23
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=76.90 E-value=12 Score=32.51 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHH
Q 037057 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIAL 209 (230)
Q Consensus 144 vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaR 209 (230)
++-|.-.|..... .+.+ |.+.... ...+..++| +.|+++++.+.||+.+ +.=..|| =.|
T Consensus 79 vvhLtmyga~~~~-~~~~-ir~~~~~-~~p~LIvvG-g~gvp~evye~aDynl--gvg~qpH-Svr 137 (176)
T PRK03958 79 VVHLTMYGENIQD-VEPE-IREAHRK-GEPLLIVVG-AEKVPREVYELADWNV--AVGNQPH-SEV 137 (176)
T ss_pred EEEEEEecCCccc-hHHH-HHHhhcc-CCcEEEEEc-CCCCCHHHHhhCCEEe--ccCCCCh-HHH
Confidence 4444455555433 3333 2222222 346888888 9999999999999888 5556999 443
No 24
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=76.86 E-value=30 Score=26.15 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=50.5
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee-------cCCCcHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS-------SMVLNHQIA 208 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS-------~mTfpHqLa 208 (230)
..+++++.+|+++.+|...+..+.++...+ .|. +++.+.+-.. ..+.+-+|..+-+. ...|+=++.
T Consensus 56 ~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~---~g~-~iv~iT~~~~---~~l~~~~d~~i~~~~~~~~~~~~~~~~~~~ 128 (139)
T cd05013 56 ANLTPGDVVIAISFSGETKETVEAAEIAKE---RGA-KVIAITDSAN---SPLAKLADIVLLVSSEEGDFRSSAFSSRIA 128 (139)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---cCC-eEEEEcCCCC---ChhHHhcCEEEEcCCCccccccchHHHHHH
Confidence 456789999999999997666666665554 453 5666655443 34556688776542 355677777
Q ss_pred HHHHHHHHH
Q 037057 209 LLVLVEQLY 217 (230)
Q Consensus 209 RLILlEQIY 217 (230)
-+.++|-||
T Consensus 129 ~~~~~d~l~ 137 (139)
T cd05013 129 QLALIDALF 137 (139)
T ss_pred HHHHHHHHH
Confidence 777777765
No 25
>CHL00181 cbbX CbbX; Provisional
Probab=76.84 E-value=20 Score=32.69 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=46.6
Q ss_pred eEEEEeCCCCCC-------ChHHHHHHHhhhhhcCCceEEEEEeCCC-------CCCHHHHhcccceEEeecCCCcHHHH
Q 037057 143 WVVMLDENGLDI-------GSEQMAELMGDAGSTGASRISFCIGGPY-------GHGPKMRERANISIKLSSMVLNHQIA 208 (230)
Q Consensus 143 ~vIlLDe~Gk~l-------sS~efA~~L~~~~~~G~~~i~FiIGGa~-------Gls~~v~~rAd~~LSLS~mTfpHqLa 208 (230)
-++.+||=+... .+.+..+.|-+.++.+..++++|..|.. -++++++.|.+..+.|.++| +.|+.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t-~~el~ 202 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYT-PEELL 202 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcC-HHHHH
Confidence 388899876531 1344555666666666667877777752 33588999999999999998 66665
Q ss_pred HH
Q 037057 209 LL 210 (230)
Q Consensus 209 RL 210 (230)
.+
T Consensus 203 ~I 204 (287)
T CHL00181 203 QI 204 (287)
T ss_pred HH
Confidence 54
No 26
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=76.24 E-value=11 Score=33.39 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCCCC-----CChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEee------cCCCcHHH
Q 037057 140 SDDWVVMLDENGLD-----IGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLS------SMVLNHQI 207 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~-----lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS------~mTfpHqL 207 (230)
..+++|..+.+++. ++..++++.+... . .+++++.|. ..|++++.++.||..+++- .|-.. +=
T Consensus 71 ~~~~vv~tt~~~~~~~~~~~~~~~~~~~~~~~--~--~~~aLvFG~E~~GL~~~~l~~cd~~v~IP~~~~~~SLNla-~A 145 (233)
T TIGR00050 71 DCDLVVGTSARSRNLQRPLLTPRELAPKLVAY--K--GKIAIVFGREDSGLTNEELLKCHVLVSIPTSEEYPSLNLS-HA 145 (233)
T ss_pred cCCEEEEECCCcCCCCCCcCCHHHHHHHHHhh--c--CCEEEEECCCCCCCCHHHHHhCCEEEEecCCCCCCeeeHH-HH
Confidence 34578888876544 3556777776543 2 369999999 9999999999999888653 22233 33
Q ss_pred HHHHHHHHHHHHH
Q 037057 208 ALLVLVEQLYRSW 220 (230)
Q Consensus 208 aRLILlEQIYRA~ 220 (230)
+-++|.| ++|+.
T Consensus 146 v~I~lye-~~~~~ 157 (233)
T TIGR00050 146 VAVILYE-LRMAF 157 (233)
T ss_pred HHHHHHH-HHHhh
Confidence 4566666 77764
No 27
>PRK10433 putative RNA methyltransferase; Provisional
Probab=74.49 E-value=13 Score=33.15 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=54.5
Q ss_pred cCCCCeEEEEeCCCCC-----CChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEee------cCCCcH
Q 037057 138 ISSDDWVVMLDENGLD-----IGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLS------SMVLNH 205 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~-----lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS------~mTfpH 205 (230)
+.+-+++|..+.+... ++.+++++.+.+....+ .++++|+|. ..|++++.++.||..+++- .|-..|
T Consensus 68 l~d~~~vigttar~~~~~~~~~~p~~~~~~l~~~~~~~-~~~alvfG~E~~Gl~~~~l~~c~~~~~IP~~~~~~SLNla~ 146 (228)
T PRK10433 68 LHDVDFTVATTARSRAKFHYYATPAELVPLLEEKSSWM-SHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQ 146 (228)
T ss_pred HHhCCeEEEEccCCCCCCCcccCHHHHHHHHHhhhccc-CCEEEEECCCCCCCCHHHHHhCCcEEEecCCCCCcceeHHH
Confidence 3344578887764332 47788999888754322 469999999 8999999999999988653 333444
Q ss_pred HHHHHHHHHHHHHH
Q 037057 206 QIALLVLVEQLYRS 219 (230)
Q Consensus 206 qLaRLILlEQIYRA 219 (230)
- +-+++.| ++++
T Consensus 147 A-~~i~~ye-~~~~ 158 (228)
T PRK10433 147 A-VMVYCYQ-LAGL 158 (228)
T ss_pred H-HHHHHHH-HHHh
Confidence 3 4456666 7665
No 28
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=73.97 E-value=8.9 Score=33.67 Aligned_cols=53 Identities=11% Similarity=0.273 Sum_probs=29.7
Q ss_pred CCCeEEEEeCC--CCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceE
Q 037057 140 SDDWVVMLDEN--GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196 (230)
Q Consensus 140 ~~~~vIlLDe~--Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~L 196 (230)
..-.+|+-|.+ -..+|=.++.++|.+. .+.+.++.|-.+|+.+|+.++||..|
T Consensus 103 ~~P~~v~TsAr~~~~~is~~~lr~~l~~~----~~P~LllFGTGwGL~~ev~~~~D~iL 157 (185)
T PF09936_consen 103 KRPLLVATSARKYPNTISYAELRRMLEEE----DRPVLLLFGTGWGLAPEVMEQCDYIL 157 (185)
T ss_dssp S--EEEE--SS--SS-B-HHHHHHHHHH------S-EEEEE--TT---HHHHTT-SEEB
T ss_pred CCCEEEEecCcCCCCCcCHHHHHHHHhcc----CCeEEEEecCCCCCCHHHHHhcCeeE
Confidence 44578888887 4457777777777432 25688999999999999999999665
No 29
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=71.89 E-value=59 Score=28.66 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=56.6
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec-------CCCcHHH
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS-------MVLNHQI 207 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~-------mTfpHqL 207 (230)
+..+++++.+|+++-.|..-...+.++... ..|. .++-|.+.+ +..+-+.||..+..+. ..|+-.+
T Consensus 170 ~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak---~~ga-~iI~IT~~~---~s~la~~ad~~l~~~~~~~~~~~~~~~s~~ 242 (278)
T PRK11557 170 VQALSPDDLLLAISYSGERRELNLAADEAL---RVGA-KVLAITGFT---PNALQQRASHCLYTIAEEQATRSAAISSTH 242 (278)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHH---HcCC-CEEEEcCCC---CCchHHhCCEEEEeCCCCcccchHHHHHHH
Confidence 446788999999999998655555555444 4554 455555544 3445667888885432 2456778
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 037057 208 ALLVLVEQLYRSWTILKG 225 (230)
Q Consensus 208 aRLILlEQIYRA~tIl~g 225 (230)
+-++++|=||-++.-.++
T Consensus 243 ~~~~l~d~L~~~~~~~~~ 260 (278)
T PRK11557 243 AQGMLTDLLFMALIQQDL 260 (278)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 899999999987765443
No 30
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=71.58 E-value=52 Score=27.07 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=54.7
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec---------------C
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS---------------M 201 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~---------------m 201 (230)
.+++++.+|+++-.|..-+..+.++...+ .|. .++-+.+-+. ..+.+.||..+.++. |
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~---~g~-~ii~IT~~~~---s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~ 141 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKE---IGA-TVAAITTNPE---STLGKLADVVVEIPAATKKDSEGNYKSIQPL 141 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHH---CCC-eEEEEECCCC---CchHHhCCEEEEeCCccccCCCCCccccCcC
Confidence 56788999999999988777777777654 453 4666665443 345666777775433 2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhc
Q 037057 202 VLNHQIALLVLVEQLYRSWTILK 224 (230)
Q Consensus 202 TfpHqLaRLILlEQIYRA~tIl~ 224 (230)
+.....+-++++|-||..+.-.+
T Consensus 142 ~s~~~~~~l~ild~l~~~~~~~~ 164 (179)
T TIGR03127 142 GSLFEQSLLLFLDAVILKLMKKK 164 (179)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 22223466899999998876543
No 31
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=70.47 E-value=13 Score=32.81 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEee
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLS 199 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS 199 (230)
.+-.++..|..|... +.+. .-.+++++++|. ..|+++++++.||..+++-
T Consensus 162 ~g~~i~~~~~~~~~~--------~~~~--~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP 212 (237)
T TIGR00186 162 SGFWTVGTDLDAQDT--------LYQV--KLTKPLALVVGNEGEGVSRLIKENCDFLIKIP 212 (237)
T ss_pred CCCEEEEEecCCCcc--------cccc--ccCCCEEEEECCCCCCcCHHHHHhCCEEEEEC
Confidence 345688899887653 1111 123579999999 8999999999999988875
No 32
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=70.08 E-value=5.5 Score=35.10 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=28.3
Q ss_pred CChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee
Q 037057 154 IGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199 (230)
Q Consensus 154 lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS 199 (230)
++.+++.+.+........--++...|.+.++++. ||..+=+|
T Consensus 36 vt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~----aD~~~~~s 77 (205)
T TIGR01769 36 IVESNLDQTVKKIKKITNLPVILFPGNVNGLSRY----ADAVFFMS 77 (205)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEECCCccccCcC----CCEEEEEE
Confidence 6777887777776654333466678888877755 67776665
No 33
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=68.83 E-value=73 Score=27.11 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
.+++++.+|.++. ++...+.+.++...+.+ ..+++|.
T Consensus 93 ~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~~---~~~v~g~ 129 (243)
T PLN02726 93 SGDFVVIMDADLS-HHPKYLPSFIKKQRETG---ADIVTGT 129 (243)
T ss_pred CCCEEEEEcCCCC-CCHHHHHHHHHHHHhcC---CcEEEEc
Confidence 5789999999996 68888888887664432 4445553
No 34
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=66.27 E-value=39 Score=25.55 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=62.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHH
Q 037057 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQ 158 (230)
Q Consensus 79 ~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~e 158 (230)
+|+.+|.-.......-...+.+++.+.+-.. .+-. ..-...+..+++++.+|++.-.|+.-...+
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~d~vi~is~sg~~~~~~~ 71 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVIS-YEAG--------------EFFHGPLENLDPDDLVIIISYSGETRELIE 71 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEE-EEHH--------------HHHTTGGGGCSTTEEEEEEESSSTTHHHHH
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceec-cchH--------------HHhhhhcccccccceeEeeeccccchhhhh
Confidence 5666776556666666666777776543222 1100 011222456788999999999997755555
Q ss_pred HHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc
Q 037057 159 MAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN 204 (230)
Q Consensus 159 fA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp 204 (230)
..+.+ .+.| ..++.+-+.+ +..+-+.||..+.+..=...
T Consensus 72 ~~~~a---k~~g-~~vi~iT~~~---~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 72 LLRFA---KERG-APVILITSNS---ESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp HHHHH---HHTT-SEEEEEESST---TSHHHHHSSEEEEEESSCGS
T ss_pred hhHHH---HhcC-CeEEEEeCCC---CCchhhhCCEEEEecCCCcc
Confidence 55544 4455 3566665443 35677888888877654433
No 35
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=65.96 E-value=1e+02 Score=27.77 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=61.1
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee--cCC-----CcHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS--SMV-----LNHQ 206 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS--~mT-----fpHq 206 (230)
.+..++++|.+|+++-.|..-+-.+.++...+ .|. .++-+-. -....+-+.||..|... .-+ ...+
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~---~ga-~vIaiT~---~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~ 243 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKE---RGA-KVIAITD---SADSPLAKLADIVLLVPVAEESFFRSPISSR 243 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHH---CCC-cEEEEcC---CCCCchhhhhceEEeccCccccchhhhHHHH
Confidence 45678899999999999998777777776664 554 4554443 23455778899888662 112 2357
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 037057 207 IALLVLVEQLYRSWTILKG 225 (230)
Q Consensus 207 LaRLILlEQIYRA~tIl~g 225 (230)
++-+.++|-||.++.-..+
T Consensus 244 ~a~l~l~d~L~~~~~~~~~ 262 (281)
T COG1737 244 IAQLALIDALITAVAQRRG 262 (281)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 8999999999999876554
No 36
>COG2419 Uncharacterized conserved protein [Function unknown]
Probab=65.94 E-value=7.3 Score=36.88 Aligned_cols=40 Identities=33% Similarity=0.382 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 131 ~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
.+.+++.++ -+.+|+||++|.+.=|++-. . ..=+|||||-
T Consensus 165 ~~e~l~~~~-idrvVlLdPnade~lse~~~--------r--~~~~FIIGGI 204 (336)
T COG2419 165 TEEFLKEIG-IDRVVLLDPNADELLSEEEI--------R--GAKAFIIGGI 204 (336)
T ss_pred HHHHHhhcC-cCceEEeCCCCccccchhhh--------c--cCceEEEeee
Confidence 456777765 36799999999997666422 1 2458999994
No 37
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=65.34 E-value=77 Score=26.14 Aligned_cols=82 Identities=16% Similarity=0.273 Sum_probs=54.5
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCC-------------C
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV-------------L 203 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mT-------------f 203 (230)
.+++++.+|++...|..-+..+.++...+ .|. .++-+.+-+. ..+.+.||..+.+..=+ +
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~---~g~-~iI~IT~~~~---s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~ 144 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKK---AGA-KVVLITSNPD---SPLAKLADVVVVIPAATKDDHGGEHKSIQPL 144 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHH---CCC-eEEEEECCCC---CchHHhCCEEEEeCCcccccCCCCccccccC
Confidence 46788999999999987666666666554 453 4655555433 24556688777543322 2
Q ss_pred c--HHHHHHHHHHHHHHHHHHhcC
Q 037057 204 N--HQIALLVLVEQLYRSWTILKG 225 (230)
Q Consensus 204 p--HqLaRLILlEQIYRA~tIl~g 225 (230)
+ ..++-++++|-||-.+.-.++
T Consensus 145 ~~~~~~~~l~~ld~l~~~~~~~~~ 168 (179)
T cd05005 145 GTLFEQSALVFLDAVIAKLMEELG 168 (179)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhC
Confidence 2 236778999999988876554
No 38
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=63.86 E-value=98 Score=26.84 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec---------CCCcHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS---------MVLNHQ 206 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~---------mTfpHq 206 (230)
..+++++.+|++.-.|+.-+..+.++...+ .|. .++-+.+.+ ...+.+.||..|..+. --|+..
T Consensus 43 ~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~---~g~-~ii~iT~~~---~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~ 115 (268)
T TIGR00393 43 GMVEPNDVVLMISYSGESLELLNLIPHLKR---LSH-KIIAFTGSP---NSSLARAADYVLDIKVEKEACPINLAPTTST 115 (268)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHH---cCC-cEEEEECCC---CCcccccCCEEEEcCCCcccCCCCCccHHHH
Confidence 456788999999999977666666655554 554 455555543 2345566888776631 235678
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 037057 207 IALLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 207 LaRLILlEQIYRA~tIl~g~ 226 (230)
++-++++|-||..+.-.+|-
T Consensus 116 ~~~~~l~d~l~~~~~~~~~~ 135 (268)
T TIGR00393 116 TLTLALGDALAVALMRARNF 135 (268)
T ss_pred HHHHHHHHHHHHHHHHHHCc
Confidence 99999999999987755553
No 39
>PRK13936 phosphoheptose isomerase; Provisional
Probab=63.52 E-value=76 Score=27.11 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc-----HHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN-----HQIA 208 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp-----HqLa 208 (230)
+....+++|.+|++.-.|..-+..+.++...+ .| -.++-+-|.+.+-=..+-..||..+....-..+ |.++
T Consensus 105 ~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~---~g-~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~~~~~~e~~~~~ 180 (197)
T PRK13936 105 VRALGQPGDVLLAISTSGNSANVIQAIQAAHE---RE-MHVVALTGRDGGKMASLLLPEDVEIRVPAERTARIQEVHLLA 180 (197)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHH---CC-CeEEEEECCCCChhhhhhccCCEEEEeCCCcHHHHHHHHHHH
Confidence 34556789999999999987777777766665 45 356666665544333333359999999998877 6677
Q ss_pred HHHHHHHHHHHH
Q 037057 209 LLVLVEQLYRSW 220 (230)
Q Consensus 209 RLILlEQIYRA~ 220 (230)
-=.|+|++-+-+
T Consensus 181 ~h~l~~~v~~~~ 192 (197)
T PRK13936 181 IHCLCDLIDSQL 192 (197)
T ss_pred HHHHHHHHHHHh
Confidence 777888776543
No 40
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=63.39 E-value=26 Score=28.89 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcc-cceEEee
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERA-NISIKLS 199 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rA-d~~LSLS 199 (230)
.++.+++.. ++.++.+|.. .+ .+.. .. ...++++|. ..|+++++++.| |..+++-
T Consensus 66 ~l~~l~~~g-v~~~~~~~~~----~~----~~~~-~~-~~~alv~GnE~~Gls~~~l~~~~d~~v~IP 122 (153)
T TIGR00185 66 FLEAEKPQK-LFALTKKGTP----AH----SQVT-YK-LGDYLMFGPETRGLPQSILDNMMEQKIRIP 122 (153)
T ss_pred HHHhCcCCC-EEEEeCCCCC----cc----eeec-cC-CCCEEEECCCCCCCCHHHHhhCCCCEEEEc
Confidence 344555444 6777777632 11 1111 11 245999999 669999999999 9988764
No 41
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=62.86 E-value=44 Score=29.73 Aligned_cols=130 Identities=7% Similarity=-0.050 Sum_probs=62.7
Q ss_pred cCcCccEEEEEEcCCCChHHHHHHHHHHhh-hcC-CCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 037057 72 CKRALPIRVITVGKKRSLGVQLVVDEYIGK-LKY-YCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDE 149 (230)
Q Consensus 72 ~~~~MkI~IiaVGK~k~~~~~~~i~eY~KR-L~~-y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe 149 (230)
.-..|||-+|+ |.++..-....+.+|..+ +.. -+.++++++.+-|-...+.+. -.+..++.+.+..-+-+|+..+
T Consensus 23 ~~~~~kI~~I~-GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~--~p~v~~l~~~v~~ADgvii~TP 99 (219)
T TIGR02690 23 KPHIPRILLLY-GSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHAD--HPKVRELRQLSEWSEGQVWCSP 99 (219)
T ss_pred CCCCCEEEEEE-CCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCccc--CHHHHHHHHHHHhCCEEEEeCC
Confidence 34457776655 887766555555555544 442 466777766532211111111 1255566666665566666666
Q ss_pred CCCCCChHHHHHHHhhhhhcC-------CceEEEEEeCCCCCCHHHHhcccceE---EeecCCCcHH
Q 037057 150 NGLDIGSEQMAELMGDAGSTG-------ASRISFCIGGPYGHGPKMRERANISI---KLSSMVLNHQ 206 (230)
Q Consensus 150 ~Gk~lsS~efA~~L~~~~~~G-------~~~i~FiIGGa~Gls~~v~~rAd~~L---SLS~mTfpHq 206 (230)
.=..-=+-.|=+.|+ |.... ..+.+-++|++-|.. .++.....+. .+.-.++|-+
T Consensus 100 EYn~sipg~LKNaiD-wls~~~~~~~~~~~KpvaivgaSgg~~-g~ra~~~LR~vl~~l~a~v~p~~ 164 (219)
T TIGR02690 100 ERHGAITGSQKDQID-WIPLSVGPVRPTQGKTLAVMQVSGGSQ-SFNAVNILRRLGRWMRMPTIPNQ 164 (219)
T ss_pred ccccCcCHHHHHHHH-hcccCcccccccCCCcEEEEEeCCcHh-HHHHHHHHHHHHHHCCCccccch
Confidence 433322333333332 22211 124455567775554 4444433322 3444455543
No 42
>PRK15482 transcriptional regulator MurR; Provisional
Probab=60.88 E-value=1.2e+02 Score=26.92 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=57.8
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec--C-----CCcHHH
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS--M-----VLNHQI 207 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~--m-----TfpHqL 207 (230)
...+++++.+|++.-.|..-+..+.++...+ .|. .++-|.+.+ ...+.+.||..|..+. . .++-.+
T Consensus 177 ~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~---~g~-~iI~IT~~~---~s~la~~ad~~l~~~~~~~~~~~~~~ss~~ 249 (285)
T PRK15482 177 SQALKKGDVQIAISYSGSKKEIVLCAEAARK---QGA-TVIAITSLA---DSPLRRLAHFTLDTVSGETEWRSSSMSTRT 249 (285)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-EEEEEeCCC---CCchHHhCCEEEEcCCCccchhHHHHHHHH
Confidence 3467889999999999998888888877765 453 455554433 3456778888875432 2 233568
Q ss_pred HHHHHHHHHHHHHHHhc
Q 037057 208 ALLVLVEQLYRSWTILK 224 (230)
Q Consensus 208 aRLILlEQIYRA~tIl~ 224 (230)
+-+.++|=||.++--.+
T Consensus 250 ~~~~~id~L~~~~~~~~ 266 (285)
T PRK15482 250 AQNSVTDLLFVGLVQLN 266 (285)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88999999998865433
No 43
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=60.37 E-value=26 Score=30.55 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=42.2
Q ss_pred HHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhccc----ceEEeecCCCcHHHH
Q 037057 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN----ISIKLSSMVLNHQIA 208 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd----~~LSLS~mTfpHqLa 208 (230)
.+++..++.+. +++|++++.. ...+........ ..+++++||.--||+++=.+.+. ..+||++-++-=|-|
T Consensus 141 ~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~---~~~i~i~IGPEGGfs~~E~~~~~~~g~~~vsLG~~ILR~ETA 215 (225)
T PF04452_consen 141 ELLEDIPDEDL-LILDEDEEPS-LSSLSEILNSEK---SFSIAIIIGPEGGFSEEEIEFLKEAGFQPVSLGPRILRTETA 215 (225)
T ss_dssp HHHHHSSECSE-EEE-TTTTCB-GGGCSHTTSCHH---C-EEEEEE--TT---HHHHHHHHHCTEEEEB-SSS---HHHH
T ss_pred HHhhccccCCE-EEEccccccc-ccchhhhhhccc---CCcEEEEECCCCCCCHHHHHHHHHCCCEEEEcCCCEEehHHH
Confidence 45555554444 8889998764 223333332211 11899999999999977555433 389999999999988
Q ss_pred HHHHHHH
Q 037057 209 LLVLVEQ 215 (230)
Q Consensus 209 RLILlEQ 215 (230)
-++.+=+
T Consensus 216 ai~als~ 222 (225)
T PF04452_consen 216 AIAALSI 222 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877643
No 44
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=60.04 E-value=17 Score=33.08 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=18.4
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCH
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~ 186 (230)
.++.++|+.-+ -.+.+. ++...+.|. =.+.|||++|++.
T Consensus 17 ~H~tliDP~k~-~~~~ei---~~~~~~~GT--DaImIGGS~gvt~ 55 (240)
T COG1646 17 RHLTLIDPDKT-EEADEI---AEAAAEAGT--DAIMIGGSDGVTE 55 (240)
T ss_pred eEEEEeCcccc-cccHHH---HHHHHHcCC--CEEEECCcccccH
Confidence 45666666554 122222 222223332 2456666666664
No 45
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=59.40 E-value=91 Score=28.68 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=61.7
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee--c-----CC-CcHHHH
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS--S-----MV-LNHQIA 208 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS--~-----mT-fpHqLa 208 (230)
.+.++|.+|.+.-.|+ +++.-+.++.....|. .++.+-+.+. ..+.+.||..|.+. + -| +...++
T Consensus 123 ~l~~~DvvI~IS~SG~---T~~vi~al~~Ak~~Ga-~tIaIT~~~~---s~La~~aD~~I~~~~g~E~~~~st~~~s~~a 195 (291)
T TIGR00274 123 HLTKNDVVVGIAASGR---TPYVIAGLQYARSLGA-LTISIACNPK---SAASEIADIAIETIVGPEILTGSSRLKAGTA 195 (291)
T ss_pred CCCCCCEEEEEeCCCC---cHHHHHHHHHHHHCCC-eEEEEECCCC---ChhHHhCCEEEecCCCCccccccchhhHHHH
Confidence 4678999999999998 4555555555555664 3555554444 34566688877663 1 12 567899
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 037057 209 LLVLVEQLYRSWTILKGQNYH 229 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g~PYH 229 (230)
-++++.-||-+..+..|.-|-
T Consensus 196 qk~iLd~L~t~~~~~~gk~~~ 216 (291)
T TIGR00274 196 QKMVLNMLSTASMIKLGKVYE 216 (291)
T ss_pred HHHHHHHHHHHHHHhcchhhc
Confidence 999999999999999998773
No 46
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=57.87 E-value=17 Score=32.77 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=39.2
Q ss_pred HHHhhcC-CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 133 AVMNIIS-SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 133 ~Il~~i~-~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
.+++... .+-.+|..|.+|.. . +.+... ...+++++|. -.|+++++++.||..+++
T Consensus 174 ~~~~~~~~~G~~v~~t~~~~~~----~----~~~~~~--~~~~aLvlG~Eg~Gls~~~~~~~D~~v~I 231 (260)
T COG0566 174 TLLELLKEAGFWVVATSLDGEV----D----LYETDL--PKKTALVLGNEGEGLSRLLLEHADQLVRI 231 (260)
T ss_pred HHHHHHHHcCeEEEEECCCCCc----c----hhhccc--cCCEEEEECCCCCCcCHHHHhhCCEEEEe
Confidence 3444444 46679999999932 1 111111 1469999998 789999999999997765
No 47
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=55.76 E-value=13 Score=27.35 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
++.-+|+.+..|....|...+..|.+ .|..++.++-||-.++
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~---~G~~~v~~l~GG~~~W 90 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSE---LGYTDVALLEGGLQGW 90 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHH---cCccCEEEccCCHHHH
Confidence 36678889999977667888888865 4777899999997554
No 48
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=55.61 E-value=15 Score=32.92 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCCC-CChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee
Q 037057 150 NGLD-IGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199 (230)
Q Consensus 150 ~Gk~-lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS 199 (230)
.|-. ++.+.+.+.+....... -.++...|++.++++. ||..+=+|
T Consensus 34 GGS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i~~~----aDa~l~~s 79 (223)
T TIGR01768 34 GGSQGVTYEKTDTLIEALRRYG-LPIILFPSNPTNVSRD----ADALFFPS 79 (223)
T ss_pred cCCCcccHHHHHHHHHHHhccC-CCEEEeCCCccccCcC----CCEEEEEE
Confidence 3555 66666666666655444 3355556666666654 56666555
No 49
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=55.44 E-value=21 Score=28.18 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=53.5
Q ss_pred hhcCCCCeEEEEeCCCCCCCh---HHHHHHHhhhhhcCCceEEEEEe-CCCCCCHHHHhcccceEEeecCCCcHHHHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGS---EQMAELMGDAGSTGASRISFCIG-GPYGHGPKMRERANISIKLSSMVLNHQIALLV 211 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS---~efA~~L~~~~~~G~~~i~FiIG-Ga~Gls~~v~~rAd~~LSLS~mTfpHqLaRLI 211 (230)
..+.++.+++. .|-.+.. .++.+++++....|.+-+++-+| .-..+++++.+.|| ...|-=+.+|-+..-.=
T Consensus 38 ~~l~~gElvlt---tg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~-~~~lPli~ip~~~~f~~ 113 (123)
T PF07905_consen 38 DWLRGGELVLT---TGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELAD-ELGLPLIEIPWEVPFSD 113 (123)
T ss_pred HhCCCCeEEEE---CCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHH-HcCCCEEEeCCCCCHHH
Confidence 34666665543 2433333 45999999999999999999888 67789999999997 45555555555554444
Q ss_pred HHHHHHHH
Q 037057 212 LVEQLYRS 219 (230)
Q Consensus 212 LlEQIYRA 219 (230)
+.++++++
T Consensus 114 I~~~v~~~ 121 (123)
T PF07905_consen 114 ITREVMRA 121 (123)
T ss_pred HHHHHHHH
Confidence 55555543
No 50
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=53.41 E-value=97 Score=23.50 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=40.2
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS 200 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~ 200 (230)
.+++++.+|++...|+.-+..+.++...+ .| -.++-+.+.++ ..+.+.||..+....
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~---~g-~~vi~iT~~~~---s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKE---KG-AKTVAITNVVG---STLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHH---cC-CeEEEEECCCC---ChHHHhCCEEEEecC
Confidence 46789999999999988777777776665 44 34555655543 457777888776553
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=50.32 E-value=57 Score=29.52 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=45.6
Q ss_pred eEEEEeCCCCCC-------ChHHHHHHHhhhhhcCCceEEEEEeCCC-------CCCHHHHhcccceEEeecCCCcHHHH
Q 037057 143 WVVMLDENGLDI-------GSEQMAELMGDAGSTGASRISFCIGGPY-------GHGPKMRERANISIKLSSMVLNHQIA 208 (230)
Q Consensus 143 ~vIlLDe~Gk~l-------sS~efA~~L~~~~~~G~~~i~FiIGGa~-------Gls~~v~~rAd~~LSLS~mTfpHqLa 208 (230)
-++++||=+... -+.+..+.|-+.++.+..++++|..|.. -++++++.|.+..+.|-+++ +.++.
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~-~edl~ 201 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYS-EAELL 201 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcC-HHHHH
Confidence 477889866331 1334444555556566566776666542 23688889999999999999 88877
Q ss_pred HHH
Q 037057 209 LLV 211 (230)
Q Consensus 209 RLI 211 (230)
.++
T Consensus 202 ~I~ 204 (284)
T TIGR02880 202 VIA 204 (284)
T ss_pred HHH
Confidence 764
No 52
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=49.73 E-value=37 Score=24.99 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
.+..++++..+|+.+..|. .|...|..|.+ .|.. +..+-||-.++
T Consensus 54 ~~~~~~~~~~ivv~C~~G~--rs~~aa~~L~~---~G~~-~~~l~GG~~~W 98 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEG--SSQFVAELLAE---RGYD-VDYLAGGMKAW 98 (100)
T ss_pred HHhhCCCCCeEEEEcCCCC--cHHHHHHHHHH---cCce-eEEeCCcHHhh
Confidence 3456777778888899884 68889988875 4665 77888886553
No 53
>PRK13937 phosphoheptose isomerase; Provisional
Probab=48.86 E-value=1.6e+02 Score=24.76 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=56.8
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc-----HHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN-----HQIA 208 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp-----HqLa 208 (230)
+...+++++.+|++.-.|+.-+..+.++...+ .|. .++-+.|.+. ..+.+.||..|..+.-.-+ |.+.
T Consensus 100 ~~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~---~g~-~~I~iT~~~~---s~L~~~ad~~l~~~~~e~~~~~~~~~~~ 172 (188)
T PRK13937 100 VEALGRPGDVLIGISTSGNSPNVLAALEKARE---LGM-KTIGLTGRDG---GKMKELCDHLLIVPSDDTPRIQEMHITI 172 (188)
T ss_pred HHhhCCCCCEEEEEeCCCCcHHHHHHHHHHHH---CCC-eEEEEeCCCC---ChhHHhCCEEEEeCCCCcHHHHHHHHHH
Confidence 33456889999999999988777777777765 453 4666665443 3466789988877654333 6677
Q ss_pred HHHHHHHHHHHH
Q 037057 209 LLVLVEQLYRSW 220 (230)
Q Consensus 209 RLILlEQIYRA~ 220 (230)
--+|+|.+++..
T Consensus 173 ~~~l~~~~~~~~ 184 (188)
T PRK13937 173 GHILCDLVERAL 184 (188)
T ss_pred HHHHHHHHHHHh
Confidence 778899988865
No 54
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=47.98 E-value=97 Score=28.89 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=66.8
Q ss_pred HHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcC-CCCeEEEEeCCCCCCChHHHHHHHhhhh---hc
Q 037057 94 VVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS-SDDWVVMLDENGLDIGSEQMAELMGDAG---ST 169 (230)
Q Consensus 94 ~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~-~~~~vIlLDe~Gk~lsS~efA~~L~~~~---~~ 169 (230)
..++|..-++.+.=..-+-+..+-.. ++. +.|.+.+.+.-. .+..+...|+ +..||+++|++.+ -.
T Consensus 38 ~~~dY~~~~~~~gv~~~V~vq~~~~~-~D~----~~e~~~v~~~~~~~g~~vg~id~-----~~~e~~a~L~~~~~~~~~ 107 (279)
T COG3618 38 LFEDYLALLKAHGVSGGVLVQVNVDP-RDN----EKELAFVAELAERHGGIVGVIDE-----CRPEFAAKLERARYPFFR 107 (279)
T ss_pred CHHHHHHHHHhcCcceeEEEecccCc-cch----HHHHHHHHhhHHhhCceEEEEec-----CCchHHHHHHHhcccccc
Confidence 56788888887643333333221111 121 233333322211 1223555554 4445999999988 77
Q ss_pred CCceEEEEEeCCCCCCHH------HHhcccceEEeecCCCcHHHHHHHHHHH
Q 037057 170 GASRISFCIGGPYGHGPK------MRERANISIKLSSMVLNHQIALLVLVEQ 215 (230)
Q Consensus 170 G~~~i~FiIGGa~Gls~~------v~~rAd~~LSLS~mTfpHqLaRLILlEQ 215 (230)
|.+..- +|++++..+. +.+-+...|+|--.+.||||.-++-+=+
T Consensus 108 GvR~~l--~~~p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~~ql~~~i~l~~ 157 (279)
T COG3618 108 GVRRNL--HVVPDGLFEAPAWRANVERLAKLGLHFDLQVDPHQLPDLIPLAL 157 (279)
T ss_pred eeeehh--hcCCccchhhHHHHHHHHHHHhcCCeEEEEeChhhhHHHHHHHh
Confidence 765443 9999998866 4455778899999999999987765433
No 55
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=47.57 E-value=32 Score=26.39 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+.+.-..+.....|+|+++|-.+++|+|=+-|..
T Consensus 22 sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~ 65 (80)
T cd06536 22 SLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPP 65 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCC
Confidence 44554444444432222234578999999999999999877764
No 56
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=47.37 E-value=2.1e+02 Score=25.63 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=61.1
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee---------cCCCcHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS---------SMVLNHQ 206 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS---------~mTfpHq 206 (230)
..+++++.+|+++-.|+.-+-.+.++...+ .|. .++-+.|.+. ..+.+.||..|-.+ .-.+...
T Consensus 85 ~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~---~g~-~vI~iT~~~~---s~la~~ad~~l~~~~~~~~~~~~~~~~ss~ 157 (321)
T PRK11543 85 GMIESRDVMLFISYSGGAKELDLIIPRLED---KSI-ALLAMTGKPT---SPLGLAAKAVLDISVEREACPMHLAPTSST 157 (321)
T ss_pred CccCCCCEEEEEeCCCCcHHHHHHHHHHHH---cCC-eEEEEECCCC---ChhHHhCCEEEEcCCccccCCCCCCcHHHH
Confidence 345788999999999998888888777765 453 4555555443 35778899888333 1225778
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 037057 207 IALLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 207 LaRLILlEQIYRA~tIl~g~ 226 (230)
++.+++.|-||....-.+|.
T Consensus 158 ~~~~~~~dsL~~~~l~~~g~ 177 (321)
T PRK11543 158 VNTLMMGDALAMAVMQARGF 177 (321)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999988766664
No 57
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=46.53 E-value=47 Score=23.86 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
.+..++++..+|+.|..| ..|...+..|.. .|..++..+-||-.+
T Consensus 49 ~~~~~~~~~~ivv~c~~g--~~s~~a~~~l~~---~G~~~v~~l~gG~~~ 93 (96)
T cd01444 49 WLGDLDRDRPVVVYCYHG--NSSAQLAQALRE---AGFTDVRSLAGGFEA 93 (96)
T ss_pred HHhhcCCCCCEEEEeCCC--ChHHHHHHHHHH---cCCceEEEcCCCHHH
Confidence 345677888888888876 457777887775 477788888887644
No 58
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=46.34 E-value=1.1e+02 Score=27.74 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEEEeCCC----CCCChHHHHHHHhhhhhcCCceEEEEEeCCC----CCCHHHHhccc--ceEEeecCCCcHHHHHH
Q 037057 144 VVMLDENG----LDIGSEQMAELMGDAGSTGASRISFCIGGPY----GHGPKMRERAN--ISIKLSSMVLNHQIALL 210 (230)
Q Consensus 144 vIlLDe~G----k~lsS~efA~~L~~~~~~G~~~i~FiIGGa~----Gls~~v~~rAd--~~LSLS~mTfpHqLaRL 210 (230)
.|++.+.+ |.+..+.|++.++.....|. + ++++||+. ...+++.+.+. ..++|..-|=-.|++-|
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~-~-ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~al 257 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGY-E-VVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAAL 257 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCC-e-EEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHH
Confidence 45555554 67889999999988876553 3 45668864 23345554432 23554333223444444
No 59
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=46.08 E-value=48 Score=22.97 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=32.9
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
..++++..+|+.|..| ..|...+..|.+ .|..++.++-||-.++
T Consensus 45 ~~~~~~~~vv~~c~~~--~~a~~~~~~l~~---~G~~~v~~l~gG~~~w 88 (89)
T cd00158 45 LELDKDKPIVVYCRSG--NRSARAAKLLRK---AGGTNVYNLEGGMLAW 88 (89)
T ss_pred hccCCCCeEEEEeCCC--chHHHHHHHHHH---hCcccEEEecCChhhc
Confidence 3456778888888886 467778888875 4667899998987654
No 60
>PF01746 tRNA_m1G_MT: tRNA (Guanine-1)-methyltransferase; InterPro: IPR016009 In transfer RNA many different modified nucleosides are found, especially in the anticodon region. tRNA (guanine-N1-)-methyltransferase 2.1.1.31 from EC is one of several nucleases operating together with the tRNA-modifying enzymes before the formation of the mature tRNA. It catalyses the reaction: S-adenosyl-L-methionine + tRNA -> S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine methylating guanosine(G) to N1-methylguanine (1-methylguanosine (m1G)) at position 37 of tRNAs that read CUN (leucine), CCN(proline), and CGG (arginine) codons. The presence of m1G improves the cellular growth rate and the polypeptide steptime and also prevents the tRNA from shifting the reading frame []. The mechanism of the trmD3-induced frameshift involving mutant tRNA(Pro) and tRNA(Leu) species has been investigated []. It has been suggested that the conformation of the anticodon loop may be a major determining element for the formation of m1G37 in vivo []. ; PDB: 3IEF_A 3KY7_A 1UAL_A 3AXZ_A 1UAM_A 1UAK_A 1UAJ_A 1OY5_B 3KNU_B 3QUV_A ....
Probab=45.85 E-value=38 Score=28.47 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=39.0
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCC
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL 203 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTf 203 (230)
+...+.+++.|+.+++....+... ..+|+++-|-+.|..+++....+...+++.+.-
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~~l~~------~~~lVyLs~d~e~~le~~~~~~~~vyiIGgiVD 111 (186)
T PF01746_consen 55 GWRVILLSPQGKPFTQKSAEELFP------KENLVYLSPDSEGVLERVDPDKDDVYIIGGIVD 111 (186)
T ss_dssp TSEEEEE-TTSEE--HHHHHHHTT------SSEEEEEE-BTT-BBHHHHHHHTSEEESSSS--
T ss_pred hhccccccccCcchhhHHHHhhcc------CCCEEEEECCccccccccccccceEEEEccEEc
Confidence 567888899999988888776543 257999999999999888877655788877653
No 61
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=45.78 E-value=68 Score=28.33 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.3
Q ss_pred ceEEEEEeCCCCCCHHHHhc----ccceEEeecCCCcHHHHHHHHHHH
Q 037057 172 SRISFCIGGPYGHGPKMRER----ANISIKLSSMVLNHQIALLVLVEQ 215 (230)
Q Consensus 172 ~~i~FiIGGa~Gls~~v~~r----Ad~~LSLS~mTfpHqLaRLILlEQ 215 (230)
+++.++||.--||+++=.+. .=..+||++-.+-=|-|-+..+=+
T Consensus 185 ~~v~~~IGPEGGfs~~Ei~~~~~~gf~~vsLG~rILR~ETA~i~als~ 232 (240)
T TIGR00046 185 GNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYALSI 232 (240)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHCCCEEEccCCcchhhccHHHHHHHH
Confidence 36999999999999854432 235799999999988888876644
No 62
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.76 E-value=60 Score=24.80 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+.+. +++....++|+|+|-.+++|+|=+-|..
T Consensus 22 sL~EL~~K~~~~l~--~~~~~~~lvL~eDGT~Vd~EeyF~~Lpd 63 (78)
T cd06539 22 SLQELISKTLDALV--ITSGLVTLVLEEDGTVVDTEEFFQTLGD 63 (78)
T ss_pred CHHHHHHHHHHHhC--CCCCCcEEEEeCCCCEEccHHHHhhCCC
Confidence 44554444444432 2345678999999999999999887764
No 63
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=44.81 E-value=36 Score=30.39 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=15.8
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 144 vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
+.+||++-. .+.+++++...+ .|. =.|+|||++|+
T Consensus 3 ~~~iDP~K~-~~~~~~~~~~~~---~gt--dai~vGGS~~v 37 (219)
T cd02812 3 VTKLDPDKE-LVDEEIAKLAEE---SGT--DAIMVGGSDGV 37 (219)
T ss_pred ceeeCCCCC-CCHHHHHHHHHh---cCC--CEEEECCccch
Confidence 344555433 444444444332 221 24455666555
No 64
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=44.36 E-value=21 Score=33.82 Aligned_cols=63 Identities=27% Similarity=0.367 Sum_probs=47.6
Q ss_pred CCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhc---ccceE---EeecCCCcHHHHHHH
Q 037057 149 ENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER---ANISI---KLSSMVLNHQIALLV 211 (230)
Q Consensus 149 e~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~r---Ad~~L---SLS~mTfpHqLaRLI 211 (230)
..|+.++-+++|+.+...++.|.++++||-|-|.-.-+.+++. |+..+ ==|.|-.+-+.++|+
T Consensus 144 ~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~Ile~l~~~~~~iPvvwNSnmY~s~E~l~lL 212 (335)
T COG1313 144 GIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHLPFILEALRYASENIPVVWNSNMYMSEETLKLL 212 (335)
T ss_pred CCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCchHHHHHHHHHHhcCCCEEEecCCccCHHHHHHh
Confidence 3799999999999999999999999999998887666655443 33222 236777777776654
No 65
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=44.36 E-value=1.3e+02 Score=26.70 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=57.7
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec-------CCCcHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS-------MVLNHQIA 208 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~-------mTfpHqLa 208 (230)
..+++++.+|++.-.|..-...+.++...+ .|. .++-|.+.+. ..+.+.||..|-.+. ..+.-+++
T Consensus 183 ~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~---~g~-~ii~IT~~~~---s~la~~ad~~l~~~~~~~~~~~~~~~s~~~ 255 (292)
T PRK11337 183 ALLQEGDVVLVVSHSGRTSDVIEAVELAKK---NGA-KIICITNSYH---SPIAKLADYVICSTAQGSPLLGENAAARIA 255 (292)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-eEEEEeCCCC---ChhHHhCCEEEEcCCCCcccccchHHHHHH
Confidence 356789999999999988776666666554 553 5666665443 356777998885432 22235678
Q ss_pred HHHHHHHHHHHHHHhcC
Q 037057 209 LLVLVEQLYRSWTILKG 225 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g 225 (230)
-++++|-||.++.-.+.
T Consensus 256 ~~~i~d~L~~~l~~~~~ 272 (292)
T PRK11337 256 QLNILDAFFVSVAQLNI 272 (292)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999988765543
No 66
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=44.22 E-value=59 Score=25.06 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+.+. ++ ....++|+|+|-.+++|+|=+-|.+
T Consensus 22 sL~EL~~K~~~~L~--~~-~~~~lvLeeDGT~Vd~EeyF~tLpd 62 (81)
T cd06537 22 SLQELLAKALETLL--LS-GVLTLVLEEDGTAVDSEDFFELLED 62 (81)
T ss_pred CHHHHHHHHHHHhC--CC-CceEEEEecCCCEEccHHHHhhCCC
Confidence 45555555444433 33 4588999999999999999888864
No 67
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=44.01 E-value=37 Score=30.52 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCC-CChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee
Q 037057 151 GLD-IGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199 (230)
Q Consensus 151 Gk~-lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS 199 (230)
|-. ++.+.+-+.+....... -.++...|.+.++++. ||..+=+|
T Consensus 40 GS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i~~~----aDa~l~~s 84 (232)
T PRK04169 40 GSDGVTEENVDELVKAIKEYD-LPVILFPGNIEGISPG----ADAYLFPS 84 (232)
T ss_pred CCCccchHHHHHHHHHHhcCC-CCEEEeCCCccccCcC----CCEEEEEE
Confidence 444 55555555555544322 2344455555555544 45544444
No 68
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=43.92 E-value=62 Score=25.75 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.6
Q ss_pred EEEeCCCC
Q 037057 176 FCIGGPYG 183 (230)
Q Consensus 176 FiIGGa~G 183 (230)
+++|-|.|
T Consensus 82 ~liG~S~G 89 (251)
T TIGR02427 82 VFCGLSLG 89 (251)
T ss_pred EEEEeCch
Confidence 34444444
No 69
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=43.83 E-value=27 Score=31.12 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEee
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLS 199 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS 199 (230)
.+-.++..+.+|.. .+. +.. -.+.+++++|. ..|+++++++.||..+++-
T Consensus 167 ~g~~i~~t~~~~~~----~~~----~~~--~~~~~alv~G~E~~Gls~~~~~~~d~~v~IP 217 (244)
T PRK11181 167 KNIWIVGTAGEADH----TLY----QSK--LTGPLALVMGAEGEGMRRLTREHCDELISIP 217 (244)
T ss_pred CCCEEEEEeCCCCc----chh----hcC--CCCCEEEEECCCCCCcCHHHHHhCCEEEEEc
Confidence 34567777766542 111 111 12469999999 8999999999999999883
No 70
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=43.15 E-value=73 Score=28.48 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=24.4
Q ss_pred ceEEEEEeC-CCCCCHHHHhcccceEEee
Q 037057 172 SRISFCIGG-PYGHGPKMRERANISIKLS 199 (230)
Q Consensus 172 ~~i~FiIGG-a~Gls~~v~~rAd~~LSLS 199 (230)
...+||.|. ..|+++++++.||..+.+-
T Consensus 112 ~p~alV~GnE~~GlS~e~l~~~D~~v~IP 140 (229)
T PRK11081 112 RPTCILMGQEKTGISQEALALADQDIIIP 140 (229)
T ss_pred CCeEEEECCCCCCCCHHHHhcCCCEEEEe
Confidence 468999999 8999999999999887654
No 71
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=42.94 E-value=3.5e+02 Score=27.17 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEe--CCCCCCHHHHhcccceEEeecCCCcHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIG--GPYGHGPKMRERANISIKLSSMVLNHQIAL 209 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIG--Ga~Gls~~v~~rAd~~LSLS~mTfpHqLaR 209 (230)
+..+|++|| -..+++..+...|.... .....++||+- -++.+.+.+++||. .+.|.+++- .++..
T Consensus 119 ~~kViIIDE-~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~-~ei~~ 185 (559)
T PRK05563 119 KYKVYIIDE-VHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISV-EDIVE 185 (559)
T ss_pred CeEEEEEEC-cccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCH-HHHHH
Confidence 356888898 45788888887777654 44456777764 47888999999995 789999984 44443
No 72
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=42.53 E-value=52 Score=27.53 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHH------HHHHHHHHHHHhc-CCC
Q 037057 156 SEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLV------LVEQLYRSWTILK-GQN 227 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLI------LlEQIYRA~tIl~-g~P 227 (230)
-+++++.|+++.+....++++..||. |.++--+..+..+=+ =.|++||..++-. |.|
T Consensus 48 ~~~i~~~l~~~~~~~~~DlVIttGGt---------------g~g~~D~t~eal~~l~~~~l~G~~~~~~~i~~~p~G~~ 111 (163)
T TIGR02667 48 IYQIRAQVSAWIADPDVQVILITGGT---------------GFTGRDVTPEALEPLFDKTVEGFGELFRQLSYEEIGTS 111 (163)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc---------------CCCCCCCcHHHHHHHHCCcCCcHHHHHHHHhhcccCHH
Confidence 45678888887532335899999985 233344455555444 4578888888764 544
No 73
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=41.83 E-value=49 Score=24.98 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+.+ .++.....|+|+++|-.+++|+|=+-|..
T Consensus 20 sL~eL~~K~~~~l--~l~~~~~~l~L~eDGT~VddEeyF~tLp~ 61 (74)
T smart00266 20 SLEELLSKVCDKL--ALPDSPVTLVLEEDGTIVDDEEYFQTLPD 61 (74)
T ss_pred CHHHHHHHHHHHh--CCCCCCcEEEEecCCcEEccHHHHhcCCC
Confidence 4444444433332 23344678999999999999999877764
No 74
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=41.79 E-value=26 Score=28.05 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=35.2
Q ss_pred EEEEeCCCCCCCh------------HHHHHHHhhhhhc-CCceEEEEEeCCCCCCHHH------HhcccceEEeecC
Q 037057 144 VVMLDENGLDIGS------------EQMAELMGDAGST-GASRISFCIGGPYGHGPKM------RERANISIKLSSM 201 (230)
Q Consensus 144 vIlLDe~Gk~lsS------------~efA~~L~~~~~~-G~~~i~FiIGGa~Gls~~v------~~rAd~~LSLS~m 201 (230)
+|+.|.+|--.|+ .++++.++..++. |..+ ..+||++.|=.-.+ -++.+..+.++.+
T Consensus 3 vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 3 VILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKK-INLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSS-EEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred EEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCC-eEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 5677777766655 4777777776654 4455 88899998833222 1234445566665
No 75
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.55 E-value=1.6e+02 Score=22.71 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=46.9
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHH
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLV 211 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLI 211 (230)
.+++++.+|++...|+.-+..+.++..++ .|. .++-+.+.+. ..+.+.||..+-...=+=+|+..-+.
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~---~g~-~vi~iT~~~~---s~la~~ad~~l~~~~~~~~~~~~~~~ 111 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKE---KGA-TVIGLTDDED---SPLAKLADYVIVYGFEIDAVEEKYLL 111 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHH---cCC-eEEEEECCCC---CcHHHhCCEEEEccCCcCccchHHHH
Confidence 56788999999999987776666666655 453 5666666554 34677899988876664455544333
No 76
>COG1772 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.35 E-value=61 Score=28.03 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=35.3
Q ss_pred CCCCChHHHHHHHhhhhhcCCceEEEEEe-CCCCCCHHHHhcccceEEeecC
Q 037057 151 GLDIGSEQMAELMGDAGSTGASRISFCIG-GPYGHGPKMRERANISIKLSSM 201 (230)
Q Consensus 151 Gk~lsS~efA~~L~~~~~~G~~~i~FiIG-Ga~Gls~~v~~rAd~~LSLS~m 201 (230)
-|.+..++.|+.+-+ + +.+.|+|| |-.|+..|+.++|.+-|-...+
T Consensus 104 ~k~i~p~dva~~~lr----~-ks~~~~iGLGr~GLPke~~~~~~YHLDiT~k 150 (178)
T COG1772 104 KKAIKPIDVAEEALR----G-KSFTFLIGLGRHGLPKEMFKSAKYHLDITDK 150 (178)
T ss_pred ccccChhhHHHHHhc----C-CceEEEEecCCCCCcHHHHhhceeeeeeccC
Confidence 356788888877654 3 46999999 8999999999999776655443
No 77
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=41.10 E-value=1.1e+02 Score=21.30 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=31.8
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
...+++..+|+.|..|. .+...+..|.+ .|..++.++-||-.++
T Consensus 51 ~~~~~~~~iv~~c~~g~--~a~~~~~~l~~---~G~~~v~~l~GG~~~w 94 (100)
T smart00450 51 LGLDKDKPVVVYCRSGN--RSAKAAWLLRE---LGFKNVYLLDGGYKEW 94 (100)
T ss_pred cCCCCCCeEEEEeCCCc--HHHHHHHHHHH---cCCCceEEecCCHHHH
Confidence 34567788999995553 56777877765 5777788888886544
No 78
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=40.66 E-value=1.7e+02 Score=25.18 Aligned_cols=27 Identities=7% Similarity=0.196 Sum_probs=17.8
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhh
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKL 102 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL 102 (230)
.|+|.|+.+|...+..+.++.+ .++++
T Consensus 1 ~m~i~ivp~g~v~~~~l~~~~~-~l~~~ 27 (179)
T PRK13267 1 MMKILIVPIGYVPASVIREASN-NLRSV 27 (179)
T ss_pred CcEEEEEeCCCCCHHHHHHHHH-HHHHH
Confidence 4889999999986655544433 34443
No 79
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.17 E-value=2.1e+02 Score=23.49 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=48.9
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNH 205 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpH 205 (230)
+...+++++.+|++...|..-+..+.++...+ .| -.++-+.+.+.+ .+.+.||..+.++.=--||
T Consensus 95 ~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~---~G-a~vI~IT~~~~s---~La~~aD~~l~~~~~~~~~ 159 (177)
T cd05006 95 VEALGQPGDVLIGISTSGNSPNVLKALEAAKE---RG-MKTIALTGRDGG---KLLELADIEIHVPSDDTPR 159 (177)
T ss_pred HHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CC-CEEEEEeCCCCC---chhhhCCEEEEeCCCChHH
Confidence 33467899999999999998888888887765 44 357777766543 3778899999887655554
No 80
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=39.57 E-value=80 Score=24.32 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=33.3
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCC
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG 185 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls 185 (230)
++++..+|++|..| ..|...|..|.. .|..++.-+-||-.|.-
T Consensus 61 ~~~~~~ivv~C~~G--~rs~~aa~~L~~---~G~~~v~~l~gG~~~~~ 103 (117)
T cd01522 61 VGKDRPVLLLCRSG--NRSIAAAEAAAQ---AGFTNVYNVLEGFEGDL 103 (117)
T ss_pred CCCCCeEEEEcCCC--ccHHHHHHHHHH---CCCCeEEECcCceecCC
Confidence 45677789999887 578888888865 57788888889887653
No 81
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=39.25 E-value=1.4e+02 Score=27.32 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=27.4
Q ss_pred eEEEEeCCC----CCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 143 WVVMLDENG----LDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 143 ~vIlLDe~G----k~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
-.|++.+.+ |.+..+.|++.++.....|. + ++++||+.
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~-~-vvl~ggp~ 225 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQARGY-E-VVLTSGPD 225 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHCCC-e-EEEEcCCC
Confidence 456667655 88999999999988866553 3 45668763
No 82
>PRK10673 acyl-CoA esterase; Provisional
Probab=38.50 E-value=62 Score=26.89 Aligned_cols=12 Identities=0% Similarity=0.260 Sum_probs=5.5
Q ss_pred HHHHHHhhcCCC
Q 037057 130 EDMAVMNIISSD 141 (230)
Q Consensus 130 E~e~Il~~i~~~ 141 (230)
....++..+..+
T Consensus 70 d~~~~l~~l~~~ 81 (255)
T PRK10673 70 DLLDTLDALQIE 81 (255)
T ss_pred HHHHHHHHcCCC
Confidence 344455555433
No 83
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=38.29 E-value=80 Score=25.56 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.8
Q ss_pred EEEEEcCC
Q 037057 79 RVITVGKK 86 (230)
Q Consensus 79 ~IiaVGK~ 86 (230)
-|++-|-.
T Consensus 16 iv~lhG~~ 23 (257)
T TIGR03611 16 VVLSSGLG 23 (257)
T ss_pred EEEEcCCC
Confidence 34455543
No 84
>PRK05660 HemN family oxidoreductase; Provisional
Probab=38.16 E-value=3.5e+02 Score=25.46 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHhhhcCC--CCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCC-CCeEEEEeCCCCCCChHHHHHHHh
Q 037057 88 SLGVQLVVDEYIGKLKYY--CKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISS-DDWVVMLDENGLDIGSEQMAELMG 164 (230)
Q Consensus 88 ~~~~~~~i~eY~KRL~~y--~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~-~~~vIlLDe~Gk~lsS~efA~~L~ 164 (230)
++|+..+++|-...+... .+++-+.+-...+..-+ ....++=.+.+.+.++- .+.-|.+.-++..++.+.+..
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~-~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~--- 112 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS-AEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVG--- 112 (378)
T ss_pred HHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC-HHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHH---
Confidence 457888877765443321 34554544322111111 11122222233333331 235688888999998855443
Q ss_pred hhhhcCCceEEEEEeCCCCCCHHHHhccc
Q 037057 165 DAGSTGASRISFCIGGPYGHGPKMRERAN 193 (230)
Q Consensus 165 ~~~~~G~~~i~FiIGGa~Gls~~v~~rAd 193 (230)
+...|..+|.+ |..++++++++.-+
T Consensus 113 -Lk~~Gv~risi---GvqS~~~~~L~~l~ 137 (378)
T PRK05660 113 -YQRAGVNRISI---GVQSFSEEKLKRLG 137 (378)
T ss_pred -HHHcCCCEEEe---ccCcCCHHHHHHhC
Confidence 33456655554 67888888876554
No 85
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=37.66 E-value=40 Score=26.27 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=34.4
Q ss_pred CCCeEEEEeCCCC----------CCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHH------hcccceEEeecCCC
Q 037057 140 SDDWVVMLDENGL----------DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMR------ERANISIKLSSMVL 203 (230)
Q Consensus 140 ~~~~vIlLDe~Gk----------~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~------~rAd~~LSLS~mTf 203 (230)
.+-.++++|-.|- ..+-+++++.+.+..+.-..+=++++|-+.|=.-... ++.+..+-+++...
T Consensus 23 ~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 23 RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSS
T ss_pred CCCEEEEEecCCccccccccccCCcchhhhhhhhhhcccccccccccccccccccccccccccccccccccceeeccccc
Confidence 4556777777763 2344555555555544432233567777766432221 12333456666665
Q ss_pred cH
Q 037057 204 NH 205 (230)
Q Consensus 204 pH 205 (230)
..
T Consensus 103 ~~ 104 (228)
T PF12697_consen 103 LP 104 (228)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 86
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=37.61 E-value=78 Score=26.53 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=35.6
Q ss_pred CCeEEEEeCCCCC-CChHHHHHHHhhhhhcCCceEEEEEeCC--CCCCHHHHhcccc
Q 037057 141 DDWVVMLDENGLD-IGSEQMAELMGDAGSTGASRISFCIGGP--YGHGPKMRERANI 194 (230)
Q Consensus 141 ~~~vIlLDe~Gk~-lsS~efA~~L~~~~~~G~~~i~FiIGGa--~Gls~~v~~rAd~ 194 (230)
++-+|++||=|+. +.|.+|.+.+.+..+. ...+.-+|--. ..+=++++++.|.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~~~vi~vv~~~~~~~~l~~i~~~~~~ 150 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-NKPVIGVVHKRSDNPFLEEIKRRPDV 150 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-TSEEEEE--SS--SCCHHHHHTTTTS
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-CCcEEEEEecCCCcHHHHHHHhCCCc
Confidence 4559999999996 9999999999999884 45677777655 3456778777664
No 87
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.57 E-value=2.1e+02 Score=25.05 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHH
Q 037057 80 VITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQM 159 (230)
Q Consensus 80 IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~ef 159 (230)
|+.-|.- +.-+.+.+++-..|... ++.+... ...++..+..+.+..+|=|.--|..+++ +
T Consensus 35 il~~~e~-De~v~esv~dVv~rwGG--~F~v~~~---------------~nw~~~i~~wk~gG~vvHLTMYG~~i~d--v 94 (179)
T COG1303 35 ILLDGEE-DEKVVESVEDVVERWGG--PFFVKFG---------------VNWRKVIREWKEGGIVVHLTMYGLNIDD--V 94 (179)
T ss_pred EEEcCcc-cHHHHHHHHHHHHhcCC--CEEEEEc---------------ccHHHHHHHhhcCCEEEEEEecCCcchh--h
Confidence 3444443 45566777777777665 3443332 1234455556667789999999988764 4
Q ss_pred HHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHH
Q 037057 160 AELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYR 218 (230)
Q Consensus 160 A~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYR 218 (230)
...|.+ .+ ++ ..+|=|+.-+..++.+-||+.+|.+.-.-+---|-.+++.-||.
T Consensus 95 ~~ei~~---~~-k~-~lvvVGaeKVp~evYelADyNV~VgnQPHSEVaaLAvFLDRl~~ 148 (179)
T COG1303 95 IDEIRE---SK-KD-VLVVVGAEKVPGEVYELADYNVSVGNQPHSEVAALAVFLDRLFE 148 (179)
T ss_pred hHHHHh---cC-Cc-EEEEEccccCCHHHhhhcccceecCCCccHHHHHHHHHHHHHhC
Confidence 445543 33 23 67777889999999999999999997644444555667766665
No 88
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=37.51 E-value=92 Score=25.42 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHH------HHHHHHHHHHHhcCC
Q 037057 157 EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLV------LVEQLYRSWTILKGQ 226 (230)
Q Consensus 157 ~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLI------LlEQIYRA~tIl~g~ 226 (230)
+++++.|+++..+...++++..||+- .++--+.++..+=+ =.|++|+...+-.|.
T Consensus 47 ~~i~~~l~~~~~~~~~DlVittGG~s---------------~g~~D~t~~al~~~~~~~l~g~~~~~~~~~~~pg~ 107 (152)
T cd00886 47 DEIREALIEWADEDGVDLILTTGGTG---------------LAPRDVTPEATRPLLDKELPGFGEAFRALSLEETG 107 (152)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcC---------------CCCCcCcHHHHHHHhCCcCccHHHHHHHhhcccCC
Confidence 46666777665422358999999852 22334444444433 236777777765553
No 89
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=37.36 E-value=1.3e+02 Score=22.75 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=30.9
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
++++.-+|+.|..| ...|...+..|.. .|..++..+-||-.++
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~~---~G~~~v~~l~GG~~~W 118 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLRY---FGHENVRVLDGGLQAW 118 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHHH---cCCCCEEEecCCHHHH
Confidence 55677889999887 4567666766654 4777898888876443
No 90
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.61 E-value=71 Score=28.82 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHhhcCCCC-eEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhc---ccc-eEEeecCCCcHHH
Q 037057 133 AVMNIISSDD-WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER---ANI-SIKLSSMVLNHQI 207 (230)
Q Consensus 133 ~Il~~i~~~~-~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~r---Ad~-~LSLS~mTfpHqL 207 (230)
.+++..++.+ ..+.+.++++.-....+.. + ....+.+.++||.--||+++=++. +.. .++|++-++==|=
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~i~iiIGPEGGfs~~Ei~~l~~~g~~~v~LGprILRtET 231 (246)
T COG1385 157 ELLKEIDDEDALKLIYEEKAKEGLLALPLL--E---ALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTET 231 (246)
T ss_pred HHHHhcccchhhhheeccccccccccchhh--h---cccCCcEEEEECCCCCCCHHHHHHHHHCCCeEeccCCceehhhH
Confidence 4556666433 4555666665544444443 1 122357999999999999765443 333 7899999887777
Q ss_pred HHHHHH
Q 037057 208 ALLVLV 213 (230)
Q Consensus 208 aRLILl 213 (230)
|-+..+
T Consensus 232 Aal~al 237 (246)
T COG1385 232 AALAAL 237 (246)
T ss_pred HHHHHH
Confidence 766654
No 91
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=36.13 E-value=2.1e+02 Score=25.67 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=60.7
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec--C------CCcHHHH
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS--M------VLNHQIA 208 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~--m------TfpHqLa 208 (230)
.+.++|.+|.+...|+.-...+.++... ..|. .++.+.+.++ ..+.+.||..|.+.. = -+...++
T Consensus 115 ~l~~~DvvI~IS~SG~T~~vi~al~~Ak---~~Ga-~~I~It~~~~---s~L~~~aD~~I~~~~g~E~~~~st~~~s~~a 187 (257)
T cd05007 115 NLTERDVVIGIAASGRTPYVLGALRYAR---ARGA-LTIGIACNPG---SPLLQLADIAIALITGPEVVAGSTRLKAGTA 187 (257)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHH---HCCC-eEEEEECCCC---ChhHHhCCEEEEcCCCCccccCccccccHHH
Confidence 3578999999999998766666655554 4553 4555555553 456777898887642 1 1234688
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 037057 209 LLVLVEQLYRSWTILKGQNYH 229 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g~PYH 229 (230)
-.+++..||=+..+..|+-|.
T Consensus 188 qk~vLn~L~t~~~~~~g~v~~ 208 (257)
T cd05007 188 QKLALNMLSTAVMIRLGKVYG 208 (257)
T ss_pred HHHHHHHHHHHHHHHcchHHH
Confidence 899999999999998887663
No 92
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=35.44 E-value=93 Score=23.69 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+.+. +++....|+|+++|-.+++|++=+-|..
T Consensus 22 sL~eL~~K~~~~l~--l~~~~~~lvL~eDGTeVddEeYF~tLp~ 63 (78)
T cd01615 22 SLEELLSKACEKLK--LPSAPVTLVLEEDGTEVDDEEYFQTLPD 63 (78)
T ss_pred CHHHHHHHHHHHcC--CCCCCeEEEEeCCCcEEccHHHHhcCCC
Confidence 44554444443332 3356778999999999999999887764
No 93
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=34.70 E-value=1.1e+02 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.490 Sum_probs=10.0
Q ss_pred HHHHhhcCCCCeEEEEeCCCCCCChH
Q 037057 132 MAVMNIISSDDWVVMLDENGLDIGSE 157 (230)
Q Consensus 132 e~Il~~i~~~~~vIlLDe~Gk~lsS~ 157 (230)
..+++.++.+.+.++ |-.+.+.
T Consensus 61 ~~~~~~~~~~~~~l~----G~S~Gg~ 82 (251)
T TIGR03695 61 ATLLDQLGIEPFFLV----GYSMGGR 82 (251)
T ss_pred HHHHHHcCCCeEEEE----EeccHHH
Confidence 344455543333333 5555544
No 94
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=34.34 E-value=74 Score=23.04 Aligned_cols=51 Identities=18% Similarity=0.047 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhh--hhcCCceEEEEEeCCCC
Q 037057 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDA--GSTGASRISFCIGGPYG 183 (230)
Q Consensus 131 ~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~--~~~G~~~i~FiIGGa~G 183 (230)
-......++.+..+|+.|..|. .+...+..+..+ ...|..++.++-||-.+
T Consensus 57 ~~~~~~~~~~~~~iv~yc~~~~--~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 57 LKELGKKIDKDKDIVFYCSSGW--RSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp HHHHTHGSTTTSEEEEEESSSC--HHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred cccccccccccccceeeeeccc--ccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 4445556677788999995554 455555542222 22477789999888543
No 95
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=34.33 E-value=3.4e+02 Score=24.27 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=4.2
Q ss_pred eEEEEEeCC
Q 037057 173 RISFCIGGP 181 (230)
Q Consensus 173 ~i~FiIGGa 181 (230)
+.+|+.||-
T Consensus 84 d~I~~~GGn 92 (250)
T TIGR02069 84 TGIFFTGGD 92 (250)
T ss_pred CEEEEeCCC
Confidence 345555543
No 96
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=34.19 E-value=50 Score=24.37 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=32.5
Q ss_pred CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHH
Q 037057 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK 187 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~ 187 (230)
+++..+|+.|..| ..|...+.+|.+ .|..++..+-||-.++...
T Consensus 56 ~~~~~vv~~c~~g--~rs~~~~~~l~~---~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 56 NPDKDIVVLCHHG--GRSMQVAQWLLR---QGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred CCCCeEEEEeCCC--chHHHHHHHHHH---cCCccEEEecCCHHHHhhh
Confidence 3466788888887 457777888875 4777899999997766443
No 97
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.94 E-value=2.7e+02 Score=25.79 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=40.5
Q ss_pred CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCC-HHHHhcccceEEeecCCC
Q 037057 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG-PKMRERANISIKLSSMVL 203 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls-~~v~~rAd~~LSLS~mTf 203 (230)
..+.-.|.|| .++.+++.+.++.......+-...++||-.=-. +++.+..-..+|.|.+|.
T Consensus 214 ~~GaD~I~LD----n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 214 EYGADIIMLD----NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HcCCCEEEEC----CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 3456689999 889999999887554323345788888864111 233334345889998886
No 98
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis]
Probab=33.90 E-value=30 Score=33.23 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhccc
Q 037057 157 EQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERAN 193 (230)
Q Consensus 157 ~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd 193 (230)
+|||+-+. ...+.|||| .+|+|++-++-|.
T Consensus 311 ~e~ad~~~-------ap~~liigge~~gvseea~~~~~ 341 (371)
T KOG2506|consen 311 VEFADSLA-------APLCLIIGGEGNGVSEEARKVCV 341 (371)
T ss_pred hHHHhhcc-------CceEEEEccCcCCcCHHHHHHHH
Confidence 56665544 469999999 8999999887664
No 99
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=33.65 E-value=1.3e+02 Score=22.15 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=29.5
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE 190 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~ 190 (230)
...|+|.. ..++ .+..+.|.++ + ..=+++|||..-+++++.+
T Consensus 50 ~~PIll~~--~~l~-~~~~~~l~~~---~-~~~v~iiGg~~~is~~v~~ 91 (92)
T PF04122_consen 50 NAPILLVN--NSLP-SSVKAFLKSL---N-IKKVYIIGGEGAISDSVEN 91 (92)
T ss_pred CCeEEEEC--CCCC-HHHHHHHHHc---C-CCEEEEECCCCccCHHHhc
Confidence 34566666 5566 6777788876 2 3456778999999998865
No 100
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.46 E-value=1.7e+02 Score=22.99 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=46.7
Q ss_pred ccEEEEEEcCC-CChHHHHHHHHHHhhhcCC-CCceEEEeecCCCCCCcHHH-H-----HHHHHHHHHhhcCCCCeEEEE
Q 037057 76 LPIRVITVGKK-RSLGVQLVVDEYIGKLKYY-CKVEDLQLRSNPKNTGDVKA-Q-----IKDEDMAVMNIISSDDWVVML 147 (230)
Q Consensus 76 MkI~IiaVGK~-k~~~~~~~i~eY~KRL~~y-~~leiieik~~~~~~~~~~~-~-----~~~E~e~Il~~i~~~~~vIlL 147 (230)
|||-+| +|.. +++.-..+.+...+.++.. +.++++++.+.+.. -... . ..+.-+.+.+.+..-|-+|+.
T Consensus 1 Mkilii-~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p--~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 1 MKILII-NGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLP--CCDGDFECPCYIPDDVQELYDKLKEADGIIFA 77 (152)
T ss_dssp -EEEEE-ESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCH--HHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred CEEEEE-ECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchh--hcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence 788777 5776 4566666666666666553 56666666542110 0000 0 123345556666544555555
Q ss_pred eCCCCCCChHHHHHHHhhh
Q 037057 148 DENGLDIGSEQMAELMGDA 166 (230)
Q Consensus 148 De~Gk~lsS~efA~~L~~~ 166 (230)
.+.=.--=|-.|-..|+.+
T Consensus 78 sP~y~~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 78 SPVYNGSVSGQLKNFLDRL 96 (152)
T ss_dssp EEEBTTBE-HHHHHHHHTH
T ss_pred ecEEcCcCChhhhHHHHHh
Confidence 5544444455677777766
No 101
>PF13173 AAA_14: AAA domain
Probab=32.26 E-value=77 Score=24.59 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC-CCC-----HHHHhcccceEEeecCCCc
Q 037057 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY-GHG-----PKMRERANISIKLSSMVLN 204 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~-Gls-----~~v~~rAd~~LSLS~mTfp 204 (230)
.+++...++..+|++||=-.. +++.+.+....+.+ .++.|++-|+. +.. +.+..|. ..+.+.||+|.
T Consensus 53 ~~~~~~~~~~~~i~iDEiq~~---~~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~ 125 (128)
T PF13173_consen 53 YFLELIKPGKKYIFIDEIQYL---PDWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFR 125 (128)
T ss_pred HHHHhhccCCcEEEEehhhhh---ccHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHH
Confidence 344444446778999998766 35667777766665 56777776653 211 2222233 36788888875
No 102
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=32.25 E-value=77 Score=28.92 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCCCh-----------HHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 143 WVVMLDENGLDIGS-----------EQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS-----------~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
..|+|...|+.+.. ..+|+.|.++.+.|. ++..||||=
T Consensus 6 ~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~-eV~iVvGGG 54 (238)
T COG0528 6 MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGV-EVAVVVGGG 54 (238)
T ss_pred EEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCc-EEEEEECCC
Confidence 45778888877766 358999999998886 799999984
No 103
>PRK13660 hypothetical protein; Provisional
Probab=31.58 E-value=36 Score=29.57 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHhhcCCC-CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEE-----eCCCCCCH-------HHHhcccceEEe
Q 037057 132 MAVMNIISSD-DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCI-----GGPYGHGP-------KMRERANISIKL 198 (230)
Q Consensus 132 e~Il~~i~~~-~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiI-----GGa~Gls~-------~v~~rAd~~LSL 198 (230)
+.|...+..+ .++|. |=++.=+.+|..+---...-..+|-.++ |=..-+++ .++++||+..++
T Consensus 33 ~~l~~~~e~G~~wfi~----ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~v 108 (182)
T PRK13660 33 RKLIALLEEGLEWVII----SGQLGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSI 108 (182)
T ss_pred HHHHHHHHCCCCEEEE----CCcchHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEe
Confidence 3444444443 33333 5577888877654322222234444443 22233344 567789999999
Q ss_pred ecCCC--cHHHH
Q 037057 199 SSMVL--NHQIA 208 (230)
Q Consensus 199 S~mTf--pHqLa 208 (230)
|+-.. |-||-
T Consensus 109 s~~~y~~p~q~~ 120 (182)
T PRK13660 109 SKRPYESPAQFR 120 (182)
T ss_pred cCCCCCChHHHH
Confidence 99888 76663
No 104
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=31.36 E-value=1.3e+02 Score=23.25 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEe
Q 037057 123 VKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198 (230)
Q Consensus 123 ~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSL 198 (230)
.+..+..+...+...-+. +.+|+..-+| +|+..++..+..|. =+.++|-..+.++++++.||.-+++
T Consensus 79 ~D~~l~~d~~~~~~~~~~-d~ivLvSgD~------Df~~~v~~l~~~g~--~V~v~~~~~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 79 VDVALAVDILELAYENPP-DTIVLVSGDS------DFAPLVRKLRERGK--RVIVVGAEDSASEALRSAADEFISI 145 (146)
T ss_dssp -HHHHHHHHHHHG--GG--SEEEEE---G------GGHHHHHHHHHH----EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred cHHHHHHHHHHHhhccCC-CEEEEEECcH------HHHHHHHHHHHcCC--EEEEEEeCCCCCHHHHHhcCEEEeC
Confidence 344555566555532223 5666665553 58888888887774 3445554679999999999988775
No 105
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.03 E-value=3.5e+02 Score=25.13 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=38.8
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh--cc-cceEEeecCCC
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE--RA-NISIKLSSMVL 203 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~--rA-d~~LSLS~mTf 203 (230)
+..+.-.|.|| .|+-+++.+.+......+.+-+..+-||-.- +.+.+ .+ -..+|.|.+|.
T Consensus 216 l~~gaDiI~LD----nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~--~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 216 LAEGAELVLLD----NFPVWQTQEAVQRRDARAPTVLLESSGGLTL--DTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred HHcCCCEEEeC----CCCHHHHHHHHHHHhccCCCEEEEEECCCCH--HHHHHHHhcCCCEEEeChhhc
Confidence 34567799999 8899999999876433333345566665432 22322 22 34899999987
No 106
>PRK02947 hypothetical protein; Provisional
Probab=30.87 E-value=2.7e+02 Score=24.67 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=54.9
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC--------CCHHHHhcccceEEe---------
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG--------HGPKMRERANISIKL--------- 198 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G--------ls~~v~~rAd~~LSL--------- 198 (230)
..+.++|.+|+++-.|..-+..+.++...+ .|. .++-+.+.++- =...+-+.||..|..
T Consensus 102 ~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~---~g~-~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~~~~~~~~v 177 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRNPVPIEMALEAKE---RGA-KVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNGAPKGDAVL 177 (246)
T ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-EEEEEcCCcccccccccCCCcCchhHhCCEEEEcCCCCCCeEE
Confidence 356789999999999988777777777665 453 34444443320 013566778888843
Q ss_pred ------ecCCCcHHHHHHHHHHHHHHH
Q 037057 199 ------SSMVLNHQIALLVLVEQLYRS 219 (230)
Q Consensus 199 ------S~mTfpHqLaRLILlEQIYRA 219 (230)
.+..++-.++-+++++.||-.
T Consensus 178 ~~e~~~~~~~~~s~~~~~~i~~~l~~~ 204 (246)
T PRK02947 178 EIPGLEAPVGPVSTVVGAAILNAIFAE 204 (246)
T ss_pred EeCCCCCCcCcHhHHHHHHHHHHHHHH
Confidence 345677899999999998643
No 107
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=30.66 E-value=1.5e+02 Score=25.39 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee
Q 037057 125 AQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS 199 (230)
Q Consensus 125 ~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS 199 (230)
..+.-++-.++- -+.=+.+|++.-+| +|+..+++.++.|. -+.++|...+.++++++.||.=+-|.
T Consensus 91 v~laIDame~~~-~~~iD~~vLvSgD~------DF~~Lv~~lre~G~--~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 91 VRMAVEAMELIY-NPNIDAVALVTRDA------DFLPVINKAKENGK--ETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEeccH------hHHHHHHHHHHCCC--EEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 334445555541 12225667766555 78888888887764 68899988899999999999766553
No 108
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=30.19 E-value=35 Score=29.30 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=6.0
Q ss_pred HhcccceEEeecC
Q 037057 189 RERANISIKLSSM 201 (230)
Q Consensus 189 ~~rAd~~LSLS~m 201 (230)
+++||+..++|+-
T Consensus 99 l~~aD~v~~vs~~ 111 (177)
T PF06908_consen 99 LEQADFVVVVSER 111 (177)
T ss_dssp HHH-SEEEESSSS
T ss_pred HHhCCEEEEccCC
Confidence 3445555555543
No 109
>PRK10864 putative methyltransferase; Provisional
Probab=30.04 E-value=1.2e+02 Score=28.91 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=25.1
Q ss_pred ceEEEEEeC-CCCCCHHHHhcccceEEee
Q 037057 172 SRISFCIGG-PYGHGPKMRERANISIKLS 199 (230)
Q Consensus 172 ~~i~FiIGG-a~Gls~~v~~rAd~~LSLS 199 (230)
..++||+|. ..|+++++++.||..+++-
T Consensus 291 ~k~aLV~GnE~~GLs~~vl~~~D~~V~IP 319 (346)
T PRK10864 291 AKMVLVLGQEYDGLSDAARQQGDLSVSID 319 (346)
T ss_pred CCeEEEECCCCCCCCHHHHHhCCEEEEEC
Confidence 469999999 7899999999999998884
No 110
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=29.89 E-value=4.1e+02 Score=23.84 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcC---CCCeEEEEeCCCCC
Q 037057 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIIS---SDDWVVMLDENGLD 153 (230)
Q Consensus 77 kI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~---~~~~vIlLDe~Gk~ 153 (230)
+.+|+.+|-. +.-.++ ..+.+++ +| ++++.-.....-. . +|.+.+.+.|. ++-.+|.| |-.
T Consensus 105 ~~~v~llG~~-~~v~~~-a~~~l~~--~y-~l~i~g~~~Gyf~---~-----~e~~~i~~~I~~s~~dil~Vgl---G~P 168 (243)
T PRK03692 105 GTPVFLVGGK-PEVLAQ-TEAKLRT--QW-NVNIVGSQDGYFT---P-----EQRQALFERIHASGAKIVTVAM---GSP 168 (243)
T ss_pred CCeEEEECCC-HHHHHH-HHHHHHH--Hh-CCEEEEEeCCCCC---H-----HHHHHHHHHHHhcCCCEEEEEC---CCc
Confidence 4789999984 333333 3333332 36 7887655433221 1 12233444443 33233333 432
Q ss_pred CChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHH
Q 037057 154 IGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSW 220 (230)
Q Consensus 154 lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~ 220 (230)
-.|.|+..+.+.. ...+.|-+||++-+-....+|| -..++=+=+|=+||.+
T Consensus 169 -kQE~~~~~~~~~~---~~~v~~gvGg~fD~~aG~~~RA------------P~w~~~~gLEWlyRl~ 219 (243)
T PRK03692 169 -KQEIFMRDCRLVY---PDALYMGVGGTYDVFTGHVKRA------------PKIWQNLGLEWLYRLL 219 (243)
T ss_pred -HHHHHHHHHHHhC---CCCEEEEeCeEEEEecCCcCcC------------cHHHHHhChHHHHHhH
Confidence 3677877665543 2458899999976655444444 3445555566666654
No 111
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=29.52 E-value=3.5e+02 Score=22.91 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCC-HHHHhcccceEEeecCC
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG-PKMRERANISIKLSSMV 202 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls-~~v~~rAd~~LSLS~mT 202 (230)
.+...|.|| .++.+++.+.++.....+.+-.+++-||-.==. ++..+..-..+|.|.+|
T Consensus 99 ~g~d~I~lD----~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 99 AGADIIMLD----NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp TT-SEEEEE----S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHH
T ss_pred hCCCEEEec----CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhh
Confidence 455689998 468899999998776666555666667643222 22322232577887765
No 112
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.50 E-value=1.6e+02 Score=20.78 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 129 ~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
.++..+.+.+....+.+.+|.+++ .+.+++..+...|. ..+++||..
T Consensus 15 ~~a~~~~~~Lr~~g~~v~~d~~~~-----~~~~~~~~a~~~g~-~~~iiig~~ 61 (91)
T cd00860 15 DYAKEVAKKLSDAGIRVEVDLRNE-----KLGKKIREAQLQKI-PYILVVGDK 61 (91)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC-----CHHHHHHHHHHcCC-CEEEEECcc
Confidence 456666666665667788887654 46667777766675 588999864
No 113
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=29.49 E-value=93 Score=26.91 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.1
Q ss_pred EEEeCCCCCC
Q 037057 145 VMLDENGLDI 154 (230)
Q Consensus 145 IlLDe~Gk~l 154 (230)
|+.|-+|..+
T Consensus 4 i~tDlDGTLl 13 (249)
T TIGR01485 4 LVSDLDNTLV 13 (249)
T ss_pred EEEcCCCcCc
Confidence 3444444444
No 114
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=29.45 E-value=34 Score=24.49 Aligned_cols=32 Identities=31% Similarity=0.656 Sum_probs=21.6
Q ss_pred eCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 148 DENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 148 De~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
++.|-..|.+++.++|++.-.+| .+.+. ||.|
T Consensus 27 ~~~~~~~s~~eL~~fL~~lv~e~--~L~~~-~G~Y 58 (60)
T PF08672_consen 27 DPGGYDISLEELQEFLDRLVEEG--KLECS-GGSY 58 (60)
T ss_dssp GG--TT--HHHHHHHHHHHHHTT--SEE---TTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC--cEEec-CCEE
Confidence 56788999999999999998776 47777 8864
No 115
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=29.40 E-value=3e+02 Score=22.23 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCeEEEEeCCCCCCChHH---HHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCC
Q 037057 141 DDWVVMLDENGLDIGSEQ---MAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV 202 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~e---fA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mT 202 (230)
+.-++++||=+.-+|..+ +++.|.+....| ..++++ -+..++.+.+|..+.+.+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~--~~vii~----TH~~~~~~~~d~~~~l~~~~ 157 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKG--AQVIVI----THLPELAELADKLIHIKKVI 157 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC--CEEEEE----cCCHHHHHhhhhEEEEEEEe
Confidence 456899999999999965 666666664442 233443 35567778889888887643
No 116
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=29.27 E-value=1.6e+02 Score=21.30 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 128 KDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 128 ~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
...+..+...+....+-+.+|..++ .+.+++..+...|. ..+.+||.
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~~~-----~~~k~~~~a~~~g~-p~~iiiG~ 61 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDSDK-----SLGKQIKYADKLGI-PFIIIIGE 61 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSSS-----THHHHHHHHHHTTE-SEEEEEEH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCC-----chhHHHHHHhhcCC-eEEEEECc
Confidence 4556666666666667788887554 46788988887875 58889983
No 117
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=28.57 E-value=4.8e+02 Score=24.22 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=46.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHh-hcCCCCeEEEEeCCCCCCCh
Q 037057 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMN-IISSDDWVVMLDENGLDIGS 156 (230)
Q Consensus 78 I~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~-~i~~~~~vIlLDe~Gk~lsS 156 (230)
..|++|-.-..+--.+.++++.++......+.+++.++.+.+........ ..|-+..+ ..+++++++.+|.+-. ++.
T Consensus 71 ~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~-n~g~~~A~~~~~~gd~llflDaD~~-~~p 148 (384)
T TIGR03469 71 LHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAV-SQGIAAARTLAPPADYLLLTDADIA-HGP 148 (384)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHH-HHHHHHHhccCCCCCEEEEECCCCC-CCh
Confidence 56666654444444566777765544333556554332221111110011 11111111 1223689999999975 688
Q ss_pred HHHHHHHhhhhhcC
Q 037057 157 EQMAELMGDAGSTG 170 (230)
Q Consensus 157 ~efA~~L~~~~~~G 170 (230)
..+.+.++...+.+
T Consensus 149 ~~l~~lv~~~~~~~ 162 (384)
T TIGR03469 149 DNLARLVARARAEG 162 (384)
T ss_pred hHHHHHHHHHHhCC
Confidence 88888887776544
No 118
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=28.43 E-value=3.9e+02 Score=24.14 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCC----
Q 037057 127 IKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV---- 202 (230)
Q Consensus 127 ~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mT---- 202 (230)
.+++.+.|-+.-.... |.+.. =+..++.+.+++. ...+++|.||..++.....++ .--+=.+|++
T Consensus 47 ~~~d~~~l~~~yg~~g--v~i~~----~np~~l~~~V~k~----~~~vv~V~GGd~~vNR~AvE~-~VDVL~~P~~~Rkd 115 (216)
T PRK03892 47 LKEELKELKKEYGKVA--ILLVT----PKPSLIREVKQRF----LNYLIYVQGGDLRVNRYAIER-GVDAIISPWVGRKD 115 (216)
T ss_pred hHHHHHHHHHhcCcce--EEEec----CCHHHHHHHHHhc----cceEEEEECCcHHHHHHHHhc-ccceeecccccCcC
Confidence 3445555555554332 22221 2455777888776 368999999999999888776 3323335554
Q ss_pred --CcHHHHHHH
Q 037057 203 --LNHQIALLV 211 (230)
Q Consensus 203 --fpHqLaRLI 211 (230)
|.|-+||+.
T Consensus 116 ~g~dHVLAKlA 126 (216)
T PRK03892 116 PGIDHVLARMA 126 (216)
T ss_pred CCccHHHHHHH
Confidence 999999975
No 119
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=27.93 E-value=1.8e+02 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=33.7
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
...++++.-+|+.|..|....|...+..|.+ .|. ++..+-||-.+
T Consensus 58 ~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~---~G~-~v~~l~GG~~~ 102 (110)
T cd01521 58 TAKLDKEKLFVVYCDGPGCNGATKAALKLAE---LGF-PVKEMIGGLDW 102 (110)
T ss_pred hhcCCCCCeEEEEECCCCCchHHHHHHHHHH---cCC-eEEEecCCHHH
Confidence 3457788889999998877788999988875 466 46667777543
No 120
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=27.89 E-value=1.2e+02 Score=26.14 Aligned_cols=81 Identities=9% Similarity=0.099 Sum_probs=37.7
Q ss_pred HHHHHhhhcCCCCceEEEeecCCCCC---Cc-HHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcC
Q 037057 95 VDEYIGKLKYYCKVEDLQLRSNPKNT---GD-VKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTG 170 (230)
Q Consensus 95 i~eY~KRL~~y~~leiieik~~~~~~---~~-~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G 170 (230)
.....++|.+...+-..+++...+.. .+ .-....+..+.+++.+.-+.+.++ |-.+...=-.....+. ...
T Consensus 41 w~~~~~~L~~~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~l~~~~~~Lv----G~S~GG~va~~~a~~~-p~~ 115 (276)
T TIGR02240 41 VFPFIEALDPDLEVIAFDVPGVGGSSTPRHPYRFPGLAKLAARMLDYLDYGQVNAI----GVSWGGALAQQFAHDY-PER 115 (276)
T ss_pred HHHHHHHhccCceEEEECCCCCCCCCCCCCcCcHHHHHHHHHHHHHHhCcCceEEE----EECHHHHHHHHHHHHC-HHH
Confidence 45566667665455444444221110 00 112345666777887764444444 6665544222222222 223
Q ss_pred CceEEEEEeC
Q 037057 171 ASRISFCIGG 180 (230)
Q Consensus 171 ~~~i~FiIGG 180 (230)
.+.++++-..
T Consensus 116 v~~lvl~~~~ 125 (276)
T TIGR02240 116 CKKLILAATA 125 (276)
T ss_pred hhheEEeccC
Confidence 4556666443
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=27.88 E-value=1.7e+02 Score=28.26 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=9.0
Q ss_pred ceEEEEEeCCC
Q 037057 172 SRISFCIGGPY 182 (230)
Q Consensus 172 ~~i~FiIGGa~ 182 (230)
+++.|+.||++
T Consensus 237 ~nilfi~~Gaf 247 (412)
T PRK05342 237 TNILFICGGAF 247 (412)
T ss_pred CCceeeecccc
Confidence 67889989985
No 122
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=27.41 E-value=68 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 037057 123 VKAQIKDEDMAVMNIISSDDWVVMLDE 149 (230)
Q Consensus 123 ~~~~~~~E~e~Il~~i~~~~~vIlLDe 149 (230)
.+.+++.|-.+||.+|+++ .|.||+
T Consensus 56 ~kqRrE~EV~~LLeKippd--~I~LdP 80 (80)
T PF08149_consen 56 KKQRREREVRSLLEKIPPD--MITLDP 80 (80)
T ss_pred hhHHhHHHHHHHHHhCCcc--ceecCc
Confidence 3456789999999999976 577774
No 123
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=27.37 E-value=3.8e+02 Score=22.59 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCC-----CCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceE
Q 037057 141 DDWVVMLDENGL-----DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196 (230)
Q Consensus 141 ~~~vIlLDe~Gk-----~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~L 196 (230)
+.-+++|||=+- .++-+++-+.|++. ..++..|+=|-+ .++++.+.||..-
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~-~p~~l~e~AD~VT 150 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRN-APKELIEAADLVT 150 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCC-CCHHHHHhCceee
Confidence 344889998553 47888888888754 346788888876 8999999999653
No 124
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=27.35 E-value=3.9e+02 Score=25.68 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=42.9
Q ss_pred eEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC--CCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHH
Q 037057 143 WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG--PYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQ 215 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG--a~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQ 215 (230)
.++++|+ ...|+.......|. ..+....+.+||++- +..+.+.++.|| ..+.|.+++ .+-+.-+|.|+
T Consensus 119 kViiIDe-ad~m~~~aanaLLk-~LEep~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~--~~~i~~~L~~~ 188 (394)
T PRK07940 119 RIVVIED-ADRLTERAANALLK-AVEEPPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPS--VEAVAEVLVRR 188 (394)
T ss_pred EEEEEec-hhhcCHHHHHHHHH-HhhcCCCCCeEEEEECChHHChHHHHhhC-eEEECCCCC--HHHHHHHHHHh
Confidence 4566655 55666655443444 445555567777766 568889999999 589998886 34444344443
No 125
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=27.29 E-value=4.8e+02 Score=23.77 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=57.8
Q ss_pred cCccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHH-------------------HHHHH
Q 037057 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD-------------------EDMAV 134 (230)
Q Consensus 74 ~~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~-------------------E~e~I 134 (230)
..+++.|+......+..+.+.++.-.+.+......|++-+-+.... ...+..++. -+..+
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD-~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~ 107 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTD-ATAERAAAAGARVVSREEILPELPPRPGKGEAL 107 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCcc-HHHHHHHHhcchhhcchhhhhccccCCCHHHHH
Confidence 3456788887777777776666665554432234566665432211 111111110 01111
Q ss_pred Hhh--cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEe
Q 037057 135 MNI--ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 135 l~~--i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIG 179 (230)
... ...+++++.+|.++..++...+.+.++..... .++.+++|
T Consensus 108 ~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~--~~~~~V~g 152 (306)
T PRK13915 108 WRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTD--PGVHLVKA 152 (306)
T ss_pred HHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhC--CCceEEEE
Confidence 111 13578999999999988998888888766433 24566665
No 126
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=27.01 E-value=2.4e+02 Score=23.40 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=15.2
Q ss_pred ccEEEEEEcCCC--ChHHHHHHHHHHh
Q 037057 76 LPIRVITVGKKR--SLGVQLVVDEYIG 100 (230)
Q Consensus 76 MkI~IiaVGK~k--~~~~~~~i~eY~K 100 (230)
||+.|+.+|..- +.-+=-.+.++++
T Consensus 1 m~ilVlGiGN~l~gDDGvG~~va~~L~ 27 (164)
T PRK10466 1 MRILVLGVGNILLTDEAIGVRIVEALE 27 (164)
T ss_pred CceEEEEECchhhccCcHHHHHHHHHH
Confidence 889999999843 3333333444443
No 127
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.00 E-value=4.6e+02 Score=24.06 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=57.3
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec--------CCCcHHHHH
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS--------MVLNHQIAL 209 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~--------mTfpHqLaR 209 (230)
+.++|.+|.+...|+.-.-.+.++... ..|. .++.+.+.++ ..+.+.||..+.... --+....+-
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak---~~Ga-~tI~IT~~~~---s~La~~aD~~I~~~~g~E~~~~st~~~s~taq 201 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYAR---ERGA-LTIGISCNPG---SPLSKEADIAIEVVVGPEVLTGSTRMKAGTAQ 201 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHH---HCCC-eEEEEECCCC---ChhhHhCCEEEEcCCCCccccccccccchhHH
Confidence 678999999999998655555554444 4553 4556655544 356667887765531 112346778
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 037057 210 LVLVEQLYRSWTILKGQNY 228 (230)
Q Consensus 210 LILlEQIYRA~tIl~g~PY 228 (230)
.+++.-||-+..+..|+-|
T Consensus 202 k~iLn~lst~~~~~~gkv~ 220 (299)
T PRK05441 202 KLVLNMISTGVMIRLGKVY 220 (299)
T ss_pred HHHHHHHHHHHHHHccHHH
Confidence 8888999999999888765
No 128
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=27.00 E-value=3.5e+02 Score=23.47 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=41.4
Q ss_pred hhcCCC-CeEEEEeC-----CCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccce
Q 037057 136 NIISSD-DWVVMLDE-----NGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195 (230)
Q Consensus 136 ~~i~~~-~~vIlLDe-----~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~ 195 (230)
+.+.++ .-+|+||| +-..++-+++-+.|++. ...+-.|+=|. +.++++.+.||..
T Consensus 109 ~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~r----p~~~evILTGR-~~p~~Lie~AD~V 169 (178)
T PRK07414 109 AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKR----PSHVDVILTGP-EMPESLLAIADQI 169 (178)
T ss_pred HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhC----CCCCEEEEECC-CCCHHHHHhCCee
Confidence 344333 44899998 45678999999999864 24577888887 5999999999964
No 129
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=26.88 E-value=64 Score=26.01 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred cCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHH
Q 037057 169 TGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLV 211 (230)
Q Consensus 169 ~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLI 211 (230)
.|..+++.++|+|++=+..+ |-+..+.++=||.-+||-+=
T Consensus 16 ~g~eNvvV~lG~aeaEaagl---aAETVt~GDPTfAGPLaGV~ 55 (107)
T PRK14717 16 YGAENIVVILGAAEAEAAGL---AAETVTNGDPTFAGPLAGVQ 55 (107)
T ss_pred cCCccEEEEecCcchhhccc---eeeeeccCCCccccccccCc
Confidence 35679999999998766665 66889999999998887653
No 130
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=26.88 E-value=1.1e+02 Score=22.37 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
+..+|+.|..|. .|..+|..|.. .|..++..+-||-.++
T Consensus 65 ~~~vv~~c~~g~--~s~~~a~~L~~---~G~~~v~~l~GG~~a~ 103 (105)
T cd01525 65 GKIIVIVSHSHK--HAALFAAFLVK---CGVPRVCILDGGINAL 103 (105)
T ss_pred CCeEEEEeCCCc--cHHHHHHHHHH---cCCCCEEEEeCcHHHh
Confidence 456888888886 58888888875 4777888888886543
No 131
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=26.72 E-value=37 Score=26.85 Aligned_cols=36 Identities=14% Similarity=0.376 Sum_probs=25.2
Q ss_pred HHHHHHHhhh-hhcCCceEEEEEeCCCCCCHHHHhcc
Q 037057 157 EQMAELMGDA-GSTGASRISFCIGGPYGHGPKMRERA 192 (230)
Q Consensus 157 ~efA~~L~~~-~~~G~~~i~FiIGGa~Gls~~v~~rA 192 (230)
.++.+.+.+. ...+..++.+++-||.++.+++++.+
T Consensus 119 P~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 119 PDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp --HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 3667777666 44556789999999999999998765
No 132
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=26.64 E-value=1.7e+02 Score=21.29 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=29.2
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
++++..+|+.+..|.. |...|..|.+. |..++..+-||-.+
T Consensus 51 ~~~~~~iv~~c~~g~~--s~~~~~~L~~~---g~~~v~~l~gG~~~ 91 (99)
T cd01527 51 LVGANAIIFHCRSGMR--TQQNAERLAAI---SAGEAYVLEGGLDA 91 (99)
T ss_pred CCCCCcEEEEeCCCch--HHHHHHHHHHc---CCccEEEeeCCHHH
Confidence 5667778888988854 67778888763 55577768887543
No 133
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=26.39 E-value=2.5e+02 Score=20.43 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhh--hcCCceEEEEEeCCCCCCHHHHhcccceEEeecCC---CcHHHHHHHHHH
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAG--STGASRISFCIGGPYGHGPKMRERANISIKLSSMV---LNHQIALLVLVE 214 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~--~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mT---fpHqLaRLILlE 214 (230)
++..++.+|. |+++.+..++.. .....++.|+-|.. -...+...+.|..++.. ++ ++|.=.+--+++
T Consensus 24 ~~~~v~gvD~------s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~-~~~~~~~~~~~~~~~l~ 95 (112)
T PF12847_consen 24 PGARVVGVDI------SPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG-FTLHFLLPLDERRRVLE 95 (112)
T ss_dssp TTSEEEEEES------SHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-GSGGGCCHHHHHHHHHH
T ss_pred CCCEEEEEeC------CHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-CccccccchhHHHHHHH
Confidence 4667899988 444444444433 23346899999877 34444555677777776 43 233233344466
Q ss_pred HHHHH
Q 037057 215 QLYRS 219 (230)
Q Consensus 215 QIYRA 219 (230)
++++.
T Consensus 96 ~~~~~ 100 (112)
T PF12847_consen 96 RIRRL 100 (112)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66664
No 134
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.32 E-value=1.6e+02 Score=21.30 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=31.1
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
.++++..+|+.|..|. .|...+.+|.. .|..++..+-||-.|+
T Consensus 52 ~~~~~~~ivv~c~~g~--~s~~~~~~l~~---~G~~~v~~l~GG~~~W 94 (96)
T cd01529 52 APGRATRYVLTCDGSL--LARFAAQELLA---LGGKPVALLDGGTSAW 94 (96)
T ss_pred cCCCCCCEEEEeCChH--HHHHHHHHHHH---cCCCCEEEeCCCHHHh
Confidence 3566777888887763 57777877754 5777898888886543
No 135
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.22 E-value=99 Score=22.22 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 129 DEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 129 ~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
.++..+...+....+.+.+|.+++ .+.+++..+...|. ..+++||..
T Consensus 18 ~~a~~la~~Lr~~g~~v~~d~~~~-----~l~k~i~~a~~~g~-~~~iiiG~~ 64 (94)
T cd00861 18 ELAEKLYAELQAAGVDVLLDDRNE-----RPGVKFADADLIGI-PYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC-----CcccchhHHHhcCC-CEEEEECCc
Confidence 455666666655567788887765 45667777776775 588899843
No 136
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=26.20 E-value=83 Score=28.92 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEE------EeCCCCCCChHHHHHHH
Q 037057 90 GVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVM------LDENGLDIGSEQMAELM 163 (230)
Q Consensus 90 ~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIl------LDe~Gk~lsS~efA~~L 163 (230)
+-++.+++|++.++. ..+|.+|+...--... -+|-.++.++..+..+.|+ .+++++.+++.+.-+.+
T Consensus 87 ~~~~kvdeyl~e~~~-lGfe~iEIS~G~i~m~------~eek~~lIe~a~d~Gf~vlsEvGkk~~e~~~~l~~~d~~k~i 159 (258)
T COG1809 87 YSQDKVDEYLNEAKE-LGFEAIEISNGTIPMS------TEEKCRLIERAVDEGFMVLSEVGKKDPESDSALSPDDRVKLI 159 (258)
T ss_pred hhcccHHHHHHHHHH-cCccEEEecCCeeecc------hHHHHHHHHHHHhcccEEehhhcccCcchhhhcChHHHHHHH
Confidence 445678999998864 6788899874321111 1122233333323334333 34677778889999999
Q ss_pred hhhhhcCCc
Q 037057 164 GDAGSTGAS 172 (230)
Q Consensus 164 ~~~~~~G~~ 172 (230)
.+..+.|..
T Consensus 160 ~~dvdaGa~ 168 (258)
T COG1809 160 NDDVDAGAE 168 (258)
T ss_pred HHHHHcchH
Confidence 988888754
No 137
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=26.06 E-value=87 Score=25.85 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=19.9
Q ss_pred CCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCH
Q 037057 153 DIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186 (230)
Q Consensus 153 ~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~ 186 (230)
...++.-++.+.++.++|. .++++-|=|++..+
T Consensus 26 ~~~~~~~~~a~~~l~~~G~-~ivy~TGRp~~~~~ 58 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNGY-KILYLTARPIGQAD 58 (157)
T ss_pred CcCCHHHHHHHHHHHHcCC-eEEEEcCCcHHHHH
Confidence 3444555666666666664 46666666666654
No 138
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=25.97 E-value=1.4e+02 Score=26.27 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=36.0
Q ss_pred ceEEEEEeCCCCCCHHHH---hccc-ceEEeecCCCcHHHHHHHHHHHH
Q 037057 172 SRISFCIGGPYGHGPKMR---ERAN-ISIKLSSMVLNHQIALLVLVEQL 216 (230)
Q Consensus 172 ~~i~FiIGGa~Gls~~v~---~rAd-~~LSLS~mTfpHqLaRLILlEQI 216 (230)
.++.++||.--|++++=+ +.+. ..+||++-.+-=|-|-++++=++
T Consensus 178 ~~i~viIGPEGGfs~~Ei~~l~~~g~~~vsLG~~ILR~ETA~i~als~~ 226 (234)
T PRK11713 178 GKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAAL 226 (234)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHCCCEEeccCCCchhhhhHHHHHHHHH
Confidence 469999999999998632 2233 48999999999999999877654
No 139
>PRK03204 haloalkane dehalogenase; Provisional
Probab=25.89 E-value=2.1e+02 Score=25.13 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=10.3
Q ss_pred HHHhhcCCCCeEEEEeCCCCCCChH
Q 037057 133 AVMNIISSDDWVVMLDENGLDIGSE 157 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~lsS~ 157 (230)
.+++.++.+.+.++ |-.+..-
T Consensus 93 ~~~~~~~~~~~~lv----G~S~Gg~ 113 (286)
T PRK03204 93 EFVDHLGLDRYLSM----GQDWGGP 113 (286)
T ss_pred HHHHHhCCCCEEEE----EECccHH
Confidence 44445543333333 6666664
No 140
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.83 E-value=4.4e+02 Score=22.78 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=53.7
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc-----H
Q 037057 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN-----H 205 (230)
Q Consensus 131 ~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp-----H 205 (230)
++.+...++++|.+|++.-.|+.-+..+.++...+ .|. .++.+.|.+. ..+.+.||..+..+.-..+ |
T Consensus 104 ~~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~---~G~-~vI~iT~~~~---s~La~~aD~~l~v~~~e~~~v~e~h 176 (196)
T PRK13938 104 ARALEGSARPGDTLFAISTSGNSMSVLRAAKTARE---LGV-TVVAMTGESG---GQLAEFADFLINVPSRDTGRIQESH 176 (196)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHH---CCC-EEEEEeCCCC---ChhhhhCCEEEEeCCCchhhHHHHH
Confidence 35556778899999999999987666666665554 554 5667766554 3466679988877653332 4
Q ss_pred HHHHHHHHHHHHHH
Q 037057 206 QIALLVLVEQLYRS 219 (230)
Q Consensus 206 qLaRLILlEQIYRA 219 (230)
..+-=+|+|.+.+.
T Consensus 177 ~~~~h~l~~~v~~~ 190 (196)
T PRK13938 177 IVFIHAISEHVEHA 190 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444556655543
No 141
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.68 E-value=2.3e+02 Score=19.68 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=25.7
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCc
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGAS 172 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~ 172 (230)
...+++++.+|+++..|..-...+.++.+.+ .|.+
T Consensus 42 ~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~---~g~~ 76 (87)
T cd04795 42 LSLLRKGDVVIALSYSGRTEELLAALEIAKE---LGIP 76 (87)
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHH---cCCe
Confidence 4567889999999999997666666666654 5543
No 142
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.33 E-value=1.3e+02 Score=22.17 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
+++..+|+.|..| ..|...+.+|.. .|..++..+-||-.+
T Consensus 59 ~~~~~ivvyC~~G--~rs~~a~~~L~~---~G~~~v~~l~GG~~~ 98 (101)
T cd01518 59 LKGKKVLMYCTGG--IRCEKASAYLKE---RGFKNVYQLKGGILK 98 (101)
T ss_pred cCCCEEEEECCCc--hhHHHHHHHHHH---hCCcceeeechhHHH
Confidence 5677789999888 456677777754 577788888888543
No 143
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=25.04 E-value=70 Score=32.25 Aligned_cols=55 Identities=9% Similarity=0.104 Sum_probs=39.3
Q ss_pred eCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCC
Q 037057 148 DENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMV 202 (230)
Q Consensus 148 De~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mT 202 (230)
|..++-++-++|.++|++.+.+|.-.+++..-..+++.+.-+..+|....=++|+
T Consensus 492 d~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 546 (552)
T PRK13279 492 DAKGRFVSLDDFPAWLAQHRQEGIVSLVLRLDRDEDLPELALPPADKVYRQGRLV 546 (552)
T ss_pred ccccCccCHHHHHHHHHHhccCCcEEEEEEeccccccccccCCCCcceeecCcEE
Confidence 6778889999999999999988876666666655556653355666655544443
No 144
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=25.03 E-value=1.4e+02 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+.+ . ++.....|+|+++|-.+| |||=+-|.+
T Consensus 22 sL~eL~~K~~~~l-~-l~~~~~~l~L~eDGTeVt-EeyF~tLp~ 62 (77)
T cd06535 22 NLKELLRKGCRLL-Q-LPCAGSRLCLYEDGTEVT-EEYFPTLPD 62 (77)
T ss_pred CHHHHHHHHHHHh-C-CCCCCcEEEEecCCcEeh-HHHHhcCCC
Confidence 3455444434333 2 333356799999999994 877666653
No 145
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=24.81 E-value=2.2e+02 Score=25.15 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=70.2
Q ss_pred cEEEEEEcCCCChH---HHHHHHHHHhhhcCCCCceEEEeecCCCCC--C--cHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 037057 77 PIRVITVGKKRSLG---VQLVVDEYIGKLKYYCKVEDLQLRSNPKNT--G--DVKAQIKDEDMAVMNIISSDDWVVMLDE 149 (230)
Q Consensus 77 kI~IiaVGK~k~~~---~~~~i~eY~KRL~~y~~leiieik~~~~~~--~--~~~~~~~~E~e~Il~~i~~~~~vIlLDe 149 (230)
.-++++|+-=-++. +-.-+..|..+ -.++.++.+....... . +....+++|.+.-++.+.-.+ ++.||-
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~---G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~-~~~l~~ 85 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAAR---GVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRE-TIFLGF 85 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHC---CCeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCCCc-ceecCC
Confidence 45777887633322 34567777554 3556666665322211 1 234567888888888887655 455554
Q ss_pred --CCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC--CCCHHH
Q 037057 150 --NGLDIGSEQMAELMGDAGSTGASRISFCIGGPY--GHGPKM 188 (230)
Q Consensus 150 --~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~--Gls~~v 188 (230)
.|...+++++.+.|.+....-..+++|+.=..+ |+.+-.
T Consensus 86 ~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~d~~~HpDH~ 128 (237)
T COG2120 86 PDTGADADPEEITGALVAIIRRLRPDVVFTPYPDDGYGHPDHR 128 (237)
T ss_pred CccccccChHHHHHHHHHHHHHhCCCEEEecCCCCCCCCCChH
Confidence 478899999999999988887788888875555 776643
No 146
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=24.48 E-value=5.2e+02 Score=23.75 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=58.1
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEee--c------CCCcHHHH
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLS--S------MVLNHQIA 208 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS--~------mTfpHqLa 208 (230)
.++++|.+|.+.-.|+.-.-.+.++.. ...|. .++-+.+.+.+ .+.+.||..|.+. + --|...++
T Consensus 124 ~l~~~DvvI~IS~SG~T~~vi~al~~A---k~~Ga-~~IaIT~~~~s---~La~~aD~~I~~~~g~E~~~~st~~~s~ta 196 (296)
T PRK12570 124 GLTADDVVVGIAASGRTPYVIGALEYA---KQIGA-TTIALSCNPDS---PIAKIADIAISPVVGPEVLTGSTRLKSGTA 196 (296)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHH---HHCCC-eEEEEECCCCC---hhHHhCCEEEeeCcCCccccccchHHHHHH
Confidence 356899999999999765544444444 44553 34444444443 3566788777642 1 11346789
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 037057 209 LLVLVEQLYRSWTILKGQNY 228 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g~PY 228 (230)
-.+++.=||-+..+..|+.|
T Consensus 197 qk~vLd~L~t~~~~r~Gk~~ 216 (296)
T PRK12570 197 QKMVLNMLSTASMIRLGKSY 216 (296)
T ss_pred HHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999877
No 147
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=24.29 E-value=1.2e+02 Score=24.83 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=30.0
Q ss_pred EEEeCCCCCCChHHHHHHHhh------hhhcCCceEEEEEeCCCCCCHHHHhc
Q 037057 145 VMLDENGLDIGSEQMAELMGD------AGSTGASRISFCIGGPYGHGPKMRER 191 (230)
Q Consensus 145 IlLDe~Gk~lsS~efA~~L~~------~~~~G~~~i~FiIGGa~Gls~~v~~r 191 (230)
.+|+++|+.+|.+.....|.. .+..|. ..|||-.++++-+++
T Consensus 72 ~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~-----~~~gpk~~~~~d~~~ 119 (130)
T PF02639_consen 72 YVLNPRGKEYTKENIDELLAMRHLMAKLRRAGK-----RTKGPKKFTKKDRQR 119 (130)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCCCCCCCHHHHHH
Confidence 579999999999998887753 233343 278888888765443
No 148
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=24.10 E-value=4.9e+02 Score=22.77 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=39.9
Q ss_pred eEEEEeCCCCC-------CChHHHHHHHhhhhhcCCceEEEEEeC-CCC------CCHHHHhcccceEEeecCCCcHHHH
Q 037057 143 WVVMLDENGLD-------IGSEQMAELMGDAGSTGASRISFCIGG-PYG------HGPKMRERANISIKLSSMVLNHQIA 208 (230)
Q Consensus 143 ~vIlLDe~Gk~-------lsS~efA~~L~~~~~~G~~~i~FiIGG-a~G------ls~~v~~rAd~~LSLS~mTfpHqLa 208 (230)
-++++||=-.. ++.+.+...+. .++.+..++++++-| +.. +++.++.|.+..+.|.++| +-|+.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~-~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~-~~el~ 184 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVK-GMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT-VEELM 184 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHH-HHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC-HHHHH
Confidence 37888875432 22344444443 344445566665544 333 4678999998899999998 44444
Q ss_pred HH
Q 037057 209 LL 210 (230)
Q Consensus 209 RL 210 (230)
.+
T Consensus 185 ~I 186 (261)
T TIGR02881 185 EI 186 (261)
T ss_pred HH
Confidence 33
No 149
>PTZ00233 variable surface protein Vir18; Provisional
Probab=24.09 E-value=28 Score=34.90 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.9
Q ss_pred HHHHHhccCcCccCCcccce
Q 037057 23 YQVLWRSITPKALLPTQIMT 42 (230)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (230)
||-|||-||-+++-+-++|.
T Consensus 454 yTPLWRvLTKknRKk~a~in 473 (509)
T PTZ00233 454 YTPLWRVLTKKNRKKGAGIN 473 (509)
T ss_pred cchhHHhhhhcccccccccc
Confidence 89999999999998888774
No 150
>PRK10358 putative rRNA methylase; Provisional
Probab=23.99 E-value=1.8e+02 Score=24.19 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=32.9
Q ss_pred CeEEEEeCCCCCC-ChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhc--ccceEEe
Q 037057 142 DWVVMLDENGLDI-GSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRER--ANISIKL 198 (230)
Q Consensus 142 ~~vIlLDe~Gk~l-sS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~r--Ad~~LSL 198 (230)
..+++.+..|+.. +..+| ....++++|. ..|+++++++. ||..+++
T Consensus 73 ~~v~~~~~~~~~~~~~~~~-----------~~~~~lvfGnE~~GLs~~~~~~~~~d~~v~I 122 (157)
T PRK10358 73 QRLFALTTKGTPAHSAVSY-----------QDGDYLMFGPETRGLPASILDALPAEQKIRI 122 (157)
T ss_pred ceEEEEeCCCCCCcccccc-----------CCCcEEEECCCCCCCCHHHHhcCCCCeEEEE
Confidence 5688889988653 22222 1236899999 88999999998 7877654
No 151
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=23.92 E-value=3.7e+02 Score=21.85 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=15.0
Q ss_pred cEEEEEEc-----CCCChHHHHHHHHHHhhhcCCCCce
Q 037057 77 PIRVITVG-----KKRSLGVQLVVDEYIGKLKYYCKVE 109 (230)
Q Consensus 77 kI~IiaVG-----K~k~~~~~~~i~eY~KRL~~y~~le 109 (230)
++..++|| .-....-...+.+|.++|....++.
T Consensus 54 ~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~ 91 (138)
T PRK00109 54 QPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLP 91 (138)
T ss_pred CCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCC
Confidence 34555555 2223344445555555554433333
No 152
>PLN03034 phosphoglycerate kinase; Provisional
Probab=23.76 E-value=2e+02 Score=28.84 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred hhhhhcCCceEEEEEeCCC-----CCCHHHHhcccceEEeecCCCcHHH
Q 037057 164 GDAGSTGASRISFCIGGPY-----GHGPKMRERANISIKLSSMVLNHQI 207 (230)
Q Consensus 164 ~~~~~~G~~~i~FiIGGa~-----Gls~~v~~rAd~~LSLS~mTfpHqL 207 (230)
.+...+..+..++|+||+= ++=+.+++++|..+-=+-|-|+--.
T Consensus 259 ~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~ 307 (481)
T PLN03034 259 VGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYK 307 (481)
T ss_pred HHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHH
Confidence 3445566678899999973 4445667889988877776655433
No 153
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.61 E-value=7.4e+02 Score=25.27 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=44.4
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEE--eCCCCCCHHHHhcccceEEeecCCC
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCI--GGPYGHGPKMRERANISIKLSSMVL 203 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiI--GGa~Gls~~v~~rAd~~LSLS~mTf 203 (230)
.+..+|++|+- ..+++..+-..|....+- ...++||. +-+..+.+.+++|| ..+.|.+++-
T Consensus 117 ~~~KVvIIDEa-h~Lt~~A~NALLK~LEEp-p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~ 179 (584)
T PRK14952 117 SRYRIFIVDEA-HMVTTAGFNALLKIVEEP-PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPP 179 (584)
T ss_pred CCceEEEEECC-CcCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCH
Confidence 34568888884 467888888777766543 34566554 45678888999998 5899999884
No 154
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=23.25 E-value=46 Score=25.29 Aligned_cols=42 Identities=12% Similarity=0.325 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 122 DVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 122 ~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
+.++.+.+=.+. +. ++.....++|+++|-.++++||=.-|..
T Consensus 22 sL~eL~~K~~~~-l~-~~~~~~~lvL~eDGT~VddEeyF~tLp~ 63 (78)
T PF02017_consen 22 SLEELLEKACDK-LQ-LPEEPVRLVLEEDGTEVDDEEYFQTLPD 63 (78)
T ss_dssp SHHHHHHHHHHH-HT--SSSTCEEEETTTTCBESSCHHHCCSSS
T ss_pred CHHHHHHHHHHH-hC-CCCcCcEEEEeCCCcEEccHHHHhhCCC
Confidence 444444443333 32 3445677899999999999998766653
No 155
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=23.23 E-value=3.6e+02 Score=24.27 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=39.1
Q ss_pred CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHH-HHHHHH
Q 037057 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLV-LVEQLY 217 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLI-LlEQIY 217 (230)
+++...+.++. +...++.+|++.|.+ . .|...-|+++|.. .-.++|++ -+.++-+++ .++++.
T Consensus 301 ~~~g~~~~i~~-~~~~~~~~~~~~L~~---~---gI~v~~~~~~~~~------~~iRis~~---~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 301 PSVGNFILVDF-DDGKDAAEAYQALLK---R---GVIVRPVAGYGLP------NALRITIG---TEEENRRFLAALKEFL 364 (367)
T ss_pred CCCceEEEEEC-CCCCCHHHHHHHHHH---C---CEEEEeCCCCCCC------CeEEEecC---CHHHHHHHHHHHHHHH
Confidence 34556666766 445789999999874 2 4666667666632 23567775 366776655 344444
Q ss_pred H
Q 037057 218 R 218 (230)
Q Consensus 218 R 218 (230)
+
T Consensus 365 ~ 365 (367)
T PRK02731 365 A 365 (367)
T ss_pred h
Confidence 3
No 156
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.12 E-value=1.1e+02 Score=26.04 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=30.0
Q ss_pred cCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHH
Q 037057 169 TGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALL 210 (230)
Q Consensus 169 ~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRL 210 (230)
.|..+++.++|+|++=+..+ |-+..+.++-||.-+||-+
T Consensus 64 ~g~enlvVvlG~aeaE~a~l---aAETVt~GDPTfaGPLAgv 102 (150)
T PF04723_consen 64 YGAENLVVVLGAAEAEAAGL---AAETVTNGDPTFAGPLAGV 102 (150)
T ss_pred cCCccEEEEecCCChhhhhh---hhhhhccCCCccccccccc
Confidence 45678999999998655554 6678899999998877754
No 157
>PRK04296 thymidine kinase; Provisional
Probab=22.87 E-value=2.8e+02 Score=23.23 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=37.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC--------CCCHHHHhcccceEEeecCC
Q 037057 143 WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY--------GHGPKMRERANISIKLSSMV 202 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~--------Gls~~v~~rAd~~LSLS~mT 202 (230)
-+|++||-+ -++.+++-+.++.....| +..++-|-+ +-++++...||...-|...-
T Consensus 80 dvviIDEaq-~l~~~~v~~l~~~l~~~g---~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC 143 (190)
T PRK04296 80 DCVLIDEAQ-FLDKEQVVQLAEVLDDLG---IPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAIC 143 (190)
T ss_pred CEEEEEccc-cCCHHHHHHHHHHHHHcC---CeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEc
Confidence 489999984 466666777666655554 444443433 56789999999887766543
No 158
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []. Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
Probab=22.85 E-value=1.4e+02 Score=22.03 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCCCCCC-----hHHHHHHHhhhhhcCCceEE
Q 037057 140 SDDWVVMLDENGLDIG-----SEQMAELMGDAGSTGASRIS 175 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~ls-----S~efA~~L~~~~~~G~~~i~ 175 (230)
.+.++-+||++|...+ ..++++.|....+.|. ++.
T Consensus 14 ~Dg~lsLMde~get~eDl~lP~~el~~ei~~~~~~g~-~~~ 53 (69)
T PF01287_consen 14 GDGFLSLMDEDGETREDLKLPDGELGEEIKAKFEEGK-EVL 53 (69)
T ss_dssp TTTEEEEEETTS-EEEEEECCSHHHHHHHHHHHHTTC-EEE
T ss_pred cCcEEEEEcCCCCeeccEEecccchhHHHHhhccCCC-eEE
Confidence 3559999999998765 6789999988888884 433
No 159
>PF09566 RE_SacI: SacI restriction endonuclease; InterPro: IPR019066 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes the SacI restriction endonuclease, which recognises and cleaves GAGCT^C.
Probab=22.69 E-value=4.1e+02 Score=25.67 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-C--CCCC-HHHHhccc---ceEEeecCCCcHHHHHHH-
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-P--YGHG-PKMRERAN---ISIKLSSMVLNHQIALLV- 211 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a--~Gls-~~v~~rAd---~~LSLS~mTfpHqLaRLI- 211 (230)
+++++.....++|.++.+++=..+.+....|..++.|+.|. + .-++ ..+.++|. ..++++.++|.-.+.-++
T Consensus 244 ~~~~l~siEvKDK~~t~~Dv~hav~Kaa~aG~~k~lfi~gpra~~~~~~~t~~~~~a~~~~v~l~f~~~~f~~~~~~~s~ 323 (351)
T PF09566_consen 244 DDSILYSIEVKDKNFTQEDVEHAVDKAAEAGINKVLFIFGPRATPVDLDRTQVIERAKECGVYLFFCVSEFTKIIFALSP 323 (351)
T ss_pred cCcEEEEEEecCCcCCHHHHHHHHHHHHhcccceeEEEecCccCcccchHHHHHHhhhcCeEEEEEEHHHHHHHHHhcCC
Confidence 35677788899999999999999999999999999999965 1 2222 23344433 356777777666555443
Q ss_pred -HHHHHHHHH
Q 037057 212 -LVEQLYRSW 220 (230)
Q Consensus 212 -LlEQIYRA~ 220 (230)
..||.+=+|
T Consensus 324 ~~~~~~f~~~ 333 (351)
T PF09566_consen 324 FKTESIFFDF 333 (351)
T ss_pred cchHHHHHHH
Confidence 246666554
No 160
>PF04252 RNA_Me_trans: Predicted SAM-dependent RNA methyltransferase; InterPro: IPR007364 This family of proteins are predicted to be alpha/beta-knot SAM-dependent RNA methyltransferases [].
Probab=22.17 E-value=61 Score=28.75 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCCCC-CChHHHHHHHhhhhhcCCceEEEEEeCCCCCCH
Q 037057 140 SDDWVVMLDENGLD-IGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~-lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~ 186 (230)
+.+.+++||+..+. ++-++ +..-=.|++||-.|=++
T Consensus 61 ~~~~VcLLDP~A~~~L~PeD-----------~~~fd~fvfGGILGD~P 97 (196)
T PF04252_consen 61 DKSRVCLLDPAAEKELSPED-----------GEKFDYFVFGGILGDHP 97 (196)
T ss_pred CcCCEEEeCCCCCCCCCccc-----------cCcccEEEECcccCCCC
Confidence 34679999999987 33222 22345899999997654
No 161
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=22.16 E-value=1.7e+02 Score=26.94 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCC
Q 037057 92 QLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGA 171 (230)
Q Consensus 92 ~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~ 171 (230)
.+.+.+.+++++++++++...-.. + +..++.. + +|++... +.+-..+++++-..
T Consensus 75 aea~~~~L~eLNp~V~V~~~~~~~------~---------~~~l~~f---d-vVV~~~~-----~~~~~~~in~~c~~-- 128 (286)
T cd01491 75 AEASQARLAELNPYVPVTVSTGPL------T---------TDELLKF---Q-VVVLTDA-----SLEDQLKINEFCHS-- 128 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC------C---------HHHHhcC---C-EEEEecC-----CHHHHHHHHHHHHH--
Confidence 467788999999999887654210 0 1123222 3 4444322 45555667766543
Q ss_pred ceEEEEEeCCCCCCHHH
Q 037057 172 SRISFCIGGPYGHGPKM 188 (230)
Q Consensus 172 ~~i~FiIGGa~Gls~~v 188 (230)
.++-|+.+++.|+--.+
T Consensus 129 ~~ipfI~a~~~G~~G~v 145 (286)
T cd01491 129 PGIKFISADTRGLFGSI 145 (286)
T ss_pred cCCEEEEEeccccEEEE
Confidence 46899999999986443
No 162
>PRK00124 hypothetical protein; Validated
Probab=22.15 E-value=3.1e+02 Score=23.23 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=30.1
Q ss_pred EEEeCCCCCCChHHHHHHHh------hhhhcCCceEEEEEeCCCCCCHHHHhc
Q 037057 145 VMLDENGLDIGSEQMAELMG------DAGSTGASRISFCIGGPYGHGPKMRER 191 (230)
Q Consensus 145 IlLDe~Gk~lsS~efA~~L~------~~~~~G~~~i~FiIGGa~Gls~~v~~r 191 (230)
.+|+++|+.+|.+.....|. +.+.+|.. -|||--++++=+++
T Consensus 88 ~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~-----t~Gp~~~~~~Dr~~ 135 (151)
T PRK00124 88 IVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIR-----TGGPKPFTQEDRSR 135 (151)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCCCCHHHHHH
Confidence 57999999999998877664 33334432 38998888876554
No 163
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.07 E-value=2.8e+02 Score=24.42 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=34.5
Q ss_pred HHHhhcCCCCeEEEEeCCCCC-CChHHHHHHHhhhhhcCCceEEEEEe
Q 037057 133 AVMNIISSDDWVVMLDENGLD-IGSEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~-lsS~efA~~L~~~~~~G~~~i~FiIG 179 (230)
.|.+++. .+-+|+.||=|+. +.|.+|-+.+++...++.. +.+.+=
T Consensus 93 al~rA~~-~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlH 138 (179)
T COG1618 93 ALRRALE-EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLH 138 (179)
T ss_pred HHHHHhh-cCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEe
Confidence 3334433 3568899999996 9999999999999988764 777763
No 164
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=21.92 E-value=2.4e+02 Score=26.60 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=75.0
Q ss_pred HHHHHHHHhccCcCccCCcccceeeeeeccccCccccCCC--CCCCCccccccccCcCcc--EEEEEEcCCCChHHHHHH
Q 037057 20 KHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSI--PSPGAGSFISYNCKRALP--IRVITVGKKRSLGVQLVV 95 (230)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Mk--I~IiaVGK~k~~~~~~~i 95 (230)
.-|--|.|+|+||....-+..+.+ ..-+.+..+=|.+ +.||.......-.....+ +--+-+|+.+.....+.+
T Consensus 35 ~g~G~i~~ktvt~~pq~Gnp~PR~---~~l~~~~~~iN~mG~~N~G~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (310)
T COG0167 35 LGFGAIVTKTVTPEPQEGNPKPRL---FRLPEDEGLINRMGFNNPGADAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAW 111 (310)
T ss_pred cCCceEEecCCCCcCCCCCCCCeE---EEecCcccHHHhcCCCchhHHHHHHHHHhhhhccCCcCcceEEecCCCcHHHH
Confidence 347788999999997777766663 2222233333332 223333222210111111 122335667778888999
Q ss_pred HHHHhhhcCCCCceEEEeec-CCCCCCcHHHH-HHHHHHHHHhhcCCC---CeEEEEeCCCCCCChHHHHHHHhhhhhcC
Q 037057 96 DEYIGKLKYYCKVEDLQLRS-NPKNTGDVKAQ-IKDEDMAVMNIISSD---DWVVMLDENGLDIGSEQMAELMGDAGSTG 170 (230)
Q Consensus 96 ~eY~KRL~~y~~leiieik~-~~~~~~~~~~~-~~~E~e~Il~~i~~~---~~vIlLDe~Gk~lsS~efA~~L~~~~~~G 170 (230)
++|...++++.+.+.+|+-- +|....-.+-+ -.+..+.+++.+... -..|=|.+ +..++.+.-+...+.|
T Consensus 112 ~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-----~~~di~~iA~~~~~~g 186 (310)
T COG0167 112 ADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP-----NITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC-----CHHHHHHHHHHHHHcC
Confidence 99999999987777777762 22211111112 223455666555422 23344555 4555555444444444
No 165
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.81 E-value=5.3e+02 Score=22.30 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc-----H
Q 037057 131 DMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN-----H 205 (230)
Q Consensus 131 ~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp-----H 205 (230)
++.+....+++|.+|++.-.|+. +++-+.++.....|. .++-+.|.+.|-=.++...+|..+.+-....+ |
T Consensus 100 ~~ql~~~~~~gDvli~iS~SG~s---~~v~~a~~~Ak~~G~-~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~~~v~e~h 175 (196)
T PRK10886 100 AKQVRALGHAGDVLLAISTRGNS---RDIVKAVEAAVTRDM-TIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMH 175 (196)
T ss_pred HHHHHHcCCCCCEEEEEeCCCCC---HHHHHHHHHHHHCCC-EEEEEeCCCCChhhhccccCCEEEEcCCCchHHHHHHH
Confidence 45556677899999999999975 555555555555664 46666665554333333347888887765543 4
Q ss_pred HHHHHHHHHHHHHH
Q 037057 206 QIALLVLVEQLYRS 219 (230)
Q Consensus 206 qLaRLILlEQIYRA 219 (230)
.+.-=+|+|-+...
T Consensus 176 ~~i~H~l~~~v~~~ 189 (196)
T PRK10886 176 MLTVNCLCDLIDNT 189 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445566665543
No 166
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.74 E-value=2.1e+02 Score=22.69 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=36.7
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCC-CCCHH---HHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPY-GHGPK---MRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQN 227 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~-Gls~~---v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~P 227 (230)
+-+++++.|.++.+.+ ++++.+||.- |-++- +.+++-.+ ++...|.++|...+..|.|
T Consensus 42 d~~~i~~~l~~~~~~~--D~VittGG~g~~~~D~t~~a~~~~~~~-------------~l~~~~~~~~~~~~~pg~p 103 (144)
T PF00994_consen 42 DPDAIKEALRRALDRA--DLVITTGGTGPGPDDVTPEALAEAGGR-------------ELPGFEELFRGVSMRPGKP 103 (144)
T ss_dssp SHHHHHHHHHHHHHTT--SEEEEESSSSSSTTCHHHHHHHHHSSE-------------E-HHHHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHhhhccC--CEEEEcCCcCcccCCcccHHHHHhcCc-------------ccccChHHHHHHHHHhhcc
Confidence 4557788887776654 8999999853 33322 22222111 2566778899998888776
No 167
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=21.62 E-value=1.5e+02 Score=21.36 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=30.1
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
++++..+|+.|..|. .|...+..|.. .|..++.++-||-.++
T Consensus 58 ~~~~~~ivv~c~~g~--~s~~~~~~l~~---~G~~~v~~l~Gg~~~w 99 (103)
T cd01447 58 FAEDKPFVFYCASGW--RSALAGKTLQD---MGLKPVYNIEGGFKDW 99 (103)
T ss_pred CCCCCeEEEEcCCCC--cHHHHHHHHHH---cChHHhEeecCcHHHH
Confidence 566778888887774 46777777765 4767788888876443
No 168
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.52 E-value=5.5e+02 Score=22.40 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=56.0
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec--CC-----CcHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS--MV-----LNHQIA 208 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~--mT-----fpHqLa 208 (230)
..+++++.+|++.-.|..-...+.++... ..|. .++.|- ++ ...+.+-||..|.++. -+ +.=.++
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak---~~g~-~vI~IT-~~---~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~ 242 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLAR---ENGA-TVIAIT-SA---GSPLAREATLALTLDVPEDTDIYMPMVSRIA 242 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHH---HcCC-eEEEEC-CC---CChhHHhCCEEEecCCCccchhcchHHHHHH
Confidence 45678999999999999766666666554 4554 455555 44 2357888999887642 11 223466
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 037057 209 LLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g~ 226 (230)
-++++|-||-+..-.+|+
T Consensus 243 ~~~l~d~L~~~l~~~~~~ 260 (284)
T PRK11302 243 QLTVIDVLATGFTLRRGA 260 (284)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 778999999877766554
No 169
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=21.45 E-value=56 Score=20.33 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.2
Q ss_pred cCCCChHHHHHHHHHHhh
Q 037057 84 GKKRSLGVQLVVDEYIGK 101 (230)
Q Consensus 84 GK~k~~~~~~~i~eY~KR 101 (230)
|..+..+++.++++|++|
T Consensus 22 g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 22 GRSRSELIREAIREYLER 39 (39)
T ss_dssp TSSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhC
Confidence 556678889999999875
No 170
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=21.39 E-value=8.1e+02 Score=26.42 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC--CCCCCHHHHhcccceEEeecCCCcHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG--PYGHGPKMRERANISIKLSSMVLNHQIALL 210 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG--a~Gls~~v~~rAd~~LSLS~mTfpHqLaRL 210 (230)
+..++++||= ..|+...|...|+..++ ...++.||.-. +..+.+.++.|| ..+.|.+++...-.-+|
T Consensus 119 r~KVIIIDEa-h~LT~~A~NALLKtLEE-PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L 187 (830)
T PRK07003 119 RFKVYMIDEV-HMLTNHAFNAMLKTLEE-PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHL 187 (830)
T ss_pred CceEEEEeCh-hhCCHHHHHHHHHHHHh-cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHH
Confidence 3457888885 47788888777776554 33466666655 567888999999 69999999876544343
No 171
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=1.9e+02 Score=24.52 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecC
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSM 201 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~m 201 (230)
-+.++++.-+| +|.-.++...+.|. -+.++|.--|.+.+++..||.-+-|++.
T Consensus 111 ~D~ivl~SgD~------DF~p~v~~~~~~G~--rv~v~~~~~~~s~~L~~~aD~~i~L~~~ 163 (181)
T COG1432 111 VDTIVLFSGDG------DFIPLVEAARDKGK--RVEVAGIEPMTSSDLRNAADYYIDLKSL 163 (181)
T ss_pred CCEEEEEcCCc------cHHHHHHHHHHcCC--EEEEEecCCcCHHHHHHhhcceEEchhh
Confidence 35678887777 56666888777775 4556666559999999999988877764
No 172
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=20.93 E-value=1.3e+02 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=15.5
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
.+++++|++- ..+++..+.+ ...|. =.|+|||++
T Consensus 9 ~h~~liDPdK--~~~~~~~~~~---~~~gt--Dai~VGGS~ 42 (230)
T PF01884_consen 9 LHATLIDPDK--PNPEEALEAA---CESGT--DAIIVGGSD 42 (230)
T ss_dssp -EEEEE-TTS--S-HHHHHHHH---HCTT---SEEEEE-ST
T ss_pred ceEEEECCCC--CCcHHHHHHH---HhcCC--CEEEECCCC
Confidence 3566777753 2445555555 22332 345667776
No 173
>COG4240 Predicted kinase [General function prediction only]
Probab=20.82 E-value=2.1e+02 Score=26.78 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=37.7
Q ss_pred HHHHHHh-hhhhcCCceEEEEEeCCCCCCHHHHhc------------ccceEEeecCCCcHHHHHHHHHHHH
Q 037057 158 QMAELMG-DAGSTGASRISFCIGGPYGHGPKMRER------------ANISIKLSSMVLNHQIALLVLVEQL 216 (230)
Q Consensus 158 efA~~L~-~~~~~G~~~i~FiIGGa~Gls~~v~~r------------Ad~~LSLS~mTfpHqLaRLILlEQI 216 (230)
.|..++. .|...|. -++.-|-||-|-.++..+. .-..+||.++-+||. .|+.|++|.
T Consensus 35 pll~Kiap~~qe~gr-Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYltha-drl~La~q~ 104 (300)
T COG4240 35 PLLAKIAPWAQERGR-PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHA-DRLRLARQV 104 (300)
T ss_pred HHHHhhhhhhhhcCC-ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchH-HHHHHHHhc
Confidence 4555543 3444453 4555566777777654332 234689999999997 799999994
No 174
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=20.81 E-value=1.8e+02 Score=23.70 Aligned_cols=11 Identities=18% Similarity=-0.021 Sum_probs=5.2
Q ss_pred HHHHHHhhcCC
Q 037057 130 EDMAVMNIISS 140 (230)
Q Consensus 130 E~e~Il~~i~~ 140 (230)
+-..+++.+..
T Consensus 85 ~~~~~~~~~~~ 95 (288)
T TIGR01250 85 ELEEVREKLGL 95 (288)
T ss_pred HHHHHHHHcCC
Confidence 33445555543
No 175
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.76 E-value=2.4e+02 Score=22.12 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=36.0
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccce
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~ 195 (230)
-+.+|+..-+| +|+..++..+..|. -+.++|-..+.+.++++.||.-
T Consensus 100 ~d~ivLvSgD~------Df~~~i~~lr~~G~--~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 100 IDTIVLVSGDS------DFVPLVERLRELGK--RVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CCEEEEEECCc------cHHHHHHHHHHcCC--EEEEEccCccChHHHHHhCCcc
Confidence 35677777666 78888888887774 4667777779999999999843
No 176
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=20.73 E-value=3.3e+02 Score=23.47 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=40.6
Q ss_pred eEEEEeCCCCCCCh----HHHHHHHhhhhhcCCceEEEEEeCCCCCCH--HHHhcccceE-EeecCCCcHHHHH
Q 037057 143 WVVMLDENGLDIGS----EQMAELMGDAGSTGASRISFCIGGPYGHGP--KMRERANISI-KLSSMVLNHQIAL 209 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS----~efA~~L~~~~~~G~~~i~FiIGGa~Gls~--~v~~rAd~~L-SLS~mTfpHqLaR 209 (230)
..+++|.+|..++. +.-.+.|+.+...|. .+.|+-..+.-..+ +.+++..... .+..+.-+-+.++
T Consensus 9 ~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~-~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~ 81 (242)
T TIGR01459 9 DVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGK-PVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV 81 (242)
T ss_pred CEEEEecccccccCCccCccHHHHHHHHHHCCC-EEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH
Confidence 36888888877654 344666777766664 58888776654444 4455555544 4555555555554
No 177
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=20.71 E-value=8.8e+02 Score=24.46 Aligned_cols=84 Identities=14% Similarity=0.258 Sum_probs=58.5
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCC-------cHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL-------NHQIA 208 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTf-------pHqLa 208 (230)
..+++++.+|++.-.|..-+..+.++...+ .|. .++-|.+ + ...+.+.||..|..+.-.+ .=+++
T Consensus 511 ~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~---~Ga-~vIaIT~-~---~spLa~~aD~~L~~~~~~~~~s~~~~~s~~~ 582 (638)
T PRK14101 511 ALLGKGDVIVAVSKSGRAPELLRVLDVAMQ---AGA-KVIAITS-S---NTPLAKRATVALETDHIEMRESQLSMISRIL 582 (638)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-eEEEEcC-C---CChhHhhCCEEEEcCCccchhccccHHHHHH
Confidence 457889999999999998777777776654 453 4555554 3 2457888998886543222 23566
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 037057 209 LLVLVEQLYRSWTILKGQN 227 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g~P 227 (230)
-++|+|-||=++.-.+|-+
T Consensus 583 ~l~lid~L~~~l~~~~~~~ 601 (638)
T PRK14101 583 HLVMIDILAVGVAIRRAAP 601 (638)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 7789999998887776333
No 178
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=20.70 E-value=5.4e+02 Score=21.98 Aligned_cols=81 Identities=10% Similarity=0.069 Sum_probs=46.0
Q ss_pred HHHHhhcC-CCCeEEEEeCCCCCCChHHHHHHHhhhh-hcC-CceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHH
Q 037057 132 MAVMNIIS-SDDWVVMLDENGLDIGSEQMAELMGDAG-STG-ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIA 208 (230)
Q Consensus 132 e~Il~~i~-~~~~vIlLDe~Gk~lsS~efA~~L~~~~-~~G-~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLa 208 (230)
..+.+.++ ++..++.+|..- ++.+..++.. ..+ ..++.|+.|....++. ..+|..++...+.+-+.--
T Consensus 69 ~~l~~~~~~p~~~v~gvD~s~------~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~d~v~~~~~l~~~~~~~ 139 (239)
T TIGR00740 69 LSARRNINQPNVKIIGIDNSQ------PMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVILNFTLQFLPPED 139 (239)
T ss_pred HHHHHhcCCCCCeEEEEeCCH------HHHHHHHHHHHhcCCCCCeEEEECChhhCCC---CCCCEEeeecchhhCCHHH
Confidence 34455543 567789998643 3333332221 112 2368899888766542 2356555544444433345
Q ss_pred HHHHHHHHHHHHH
Q 037057 209 LLVLVEQLYRSWT 221 (230)
Q Consensus 209 RLILlEQIYRA~t 221 (230)
+.-+++++||+.+
T Consensus 140 ~~~~l~~i~~~Lk 152 (239)
T TIGR00740 140 RIALLTKIYEGLN 152 (239)
T ss_pred HHHHHHHHHHhcC
Confidence 6788999999764
No 179
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=20.62 E-value=1.9e+02 Score=30.12 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC------CCHHHHhcccc
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG------HGPKMRERANI 194 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G------ls~~v~~rAd~ 194 (230)
+...+..+.=.|+.-++|-.- -+++.+.++..++.| -++++||||+.- ..++++++-..
T Consensus 196 lv~~ia~~aD~i~~pe~~~~~-~~q~~~~l~~~r~~G-ln~viVigG~~~~~ga~i~ae~vk~~~~k 260 (666)
T KOG2440|consen 196 LVAAIAGGADTIFIPERPGED-PEQLCEILDSIRKRG-LNIVIVIGGAIDNTGAPIIAEEVKERKLK 260 (666)
T ss_pred HHHHhhcCCCEEEecCCCCCC-HHHHHHHHHHHHhCC-CCEEEEEecccCCCCCcccHHHHHHhhhh
Confidence 344454444456666776554 899999999999998 689999999642 34566655444
No 180
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.62 E-value=2.8e+02 Score=24.96 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=47.3
Q ss_pred ccCccccCCCCCCCCccccccccCcCccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHH
Q 037057 50 SAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKD 129 (230)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~ 129 (230)
-.+||+.|+|-+|--|-- +.-.+.-++-|+....-+.+ .|.+ ++.++++.
T Consensus 26 qrenYLG~Si~ApvGRWq------kGkDL~Wyakgr~~~~~~~~---~~ke---------------------Ei~~vkE~ 75 (238)
T KOG4520|consen 26 QRENYLGQSIYAPVGRWQ------KGKDLEWYAKGRTTQSAIKE---KYKE---------------------EILEVKER 75 (238)
T ss_pred hhhhhccccccccccccc------cCCcceeeecCccccccchH---HHHH---------------------HHHHHHHH
Confidence 368999999999944321 12235556666543332211 1211 23346778
Q ss_pred HHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhh
Q 037057 130 EDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGD 165 (230)
Q Consensus 130 E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~ 165 (230)
|-+.++.+|.-. .+---+.| ++-++|++...+
T Consensus 76 E~~al~eALGl~--k~stqP~g--L~k~~fse~~kR 107 (238)
T KOG4520|consen 76 EQRALAEALGLP--KSSTQPSG--LLKLTFSEAAKR 107 (238)
T ss_pred HHHHHHHHhCCC--ccccCCcc--hhHHHHHHHHhh
Confidence 888888887511 23334556 778888887765
No 181
>PRK05463 hypothetical protein; Provisional
Probab=20.59 E-value=97 Score=28.69 Aligned_cols=98 Identities=10% Similarity=0.163 Sum_probs=55.7
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
++-+++++ ++-+.+-+..|-+|=.+-|++=-+--+..+. .. .-.++..|...++ .|.|- ++|+...
T Consensus 32 ~QANLviL----P~~~A~DF~~FC~rNpkpCPLL~v~~~G~~~-~~-----~la~~~DIRTD~P--~Y~vy--~~G~l~~ 97 (262)
T PRK05463 32 AQANLVIL----PKDWAYDFLLFCQRNPKPCPLLDVTEPGSPE-LP-----LLGPDADIRTDVP--RYRVY--RDGELVE 97 (262)
T ss_pred ceeeEEEe----cHHHHHHHHHHHhhCCCCCCceeecCCCCCc-cc-----ccCCCcccccCCC--ceEEE--ECCEEee
Confidence 34555554 3445666777777777777764221111111 00 0012223333333 35554 6687654
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcc
Q 037057 156 SEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA 192 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rA 192 (230)
+..+..+-|.++ -+.|+||=|+-|..++.+..
T Consensus 98 --e~~di~~~w~dD---~V~FliGCSFSFE~AL~~aG 129 (262)
T PRK05463 98 --EVTDITDLWRDD---LVTFLIGCSFSFEHALLEAG 129 (262)
T ss_pred --ecCchHHhCccC---eEEEEeecCCcHHHHHHHCC
Confidence 456777778543 58999999999999987753
No 182
>PRK14556 pyrH uridylate kinase; Provisional
Probab=20.33 E-value=1e+02 Score=28.00 Aligned_cols=37 Identities=14% Similarity=0.390 Sum_probs=27.0
Q ss_pred EEEEeCCCCCCCh-----------HHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 144 VVMLDENGLDIGS-----------EQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 144 vIlLDe~Gk~lsS-----------~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
.|+|-..|+.+.. .++|+.|.+..+.|. ++..||||=
T Consensus 17 rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~-~i~iVvGGG 64 (249)
T PRK14556 17 RILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGV-ELALVVGGG 64 (249)
T ss_pred EEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCc-EEEEEECCC
Confidence 4666666665543 357888888877775 799999994
No 183
>PRK04195 replication factor C large subunit; Provisional
Probab=20.23 E-value=8e+02 Score=23.78 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=38.9
Q ss_pred CCeEEEEeCCCCCCC---hHHHHHHHhhhhhcCCceEEEEEeCCCCCCH-HHHhcccceEEeecCCCc
Q 037057 141 DDWVVMLDENGLDIG---SEQMAELMGDAGSTGASRISFCIGGPYGHGP-KMRERANISIKLSSMVLN 204 (230)
Q Consensus 141 ~~~vIlLDe~Gk~ls---S~efA~~L~~~~~~G~~~i~FiIGGa~Gls~-~v~~rAd~~LSLS~mTfp 204 (230)
+..+|++|+-...-. ...+ +.|.+........++++...+++... .++.++ ..+.|.+++-.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~-~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~ 163 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGA-RAILELIKKAKQPIILTANDPYDPSLRELRNAC-LMIEFKRLSTR 163 (482)
T ss_pred CCeEEEEecCcccccccchhHH-HHHHHHHHcCCCCEEEeccCccccchhhHhccc-eEEEecCCCHH
Confidence 456889998654322 1223 33333334444557777777888887 777777 57899888765
No 184
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=20.07 E-value=3e+02 Score=23.63 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCeEEEEeCCC-----CCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEe
Q 037057 141 DDWVVMLDENG-----LDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKL 198 (230)
Q Consensus 141 ~~~vIlLDe~G-----k~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSL 198 (230)
+.-+|+|||=+ ..++-+++-+.|++. ..++-.|+=|. ..++++.+.||..--+
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r----p~~~evVlTGR-~~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDVEEVVEALQER----PGHQHVIITGR-GCPQDLLELADLVTEM 154 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCHHHHHHHHHhC----CCCCEEEEECC-CCCHHHHHhCceeeee
Confidence 34489999976 567888888888753 34677888887 5699999999975443
No 185
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=20.04 E-value=1.7e+02 Score=26.39 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=19.0
Q ss_pred CeEEEEeCCCCC------CChHHHHHHHhhhhhc-CCceEEEEEeCCCC
Q 037057 142 DWVVMLDENGLD------IGSEQMAELMGDAGST-GASRISFCIGGPYG 183 (230)
Q Consensus 142 ~~vIlLDe~Gk~------lsS~efA~~L~~~~~~-G~~~i~FiIGGa~G 183 (230)
-.+|++|-.|-- ++.+++|+.+....+. |..+.+.+||-|.|
T Consensus 100 ~~Vi~~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmG 148 (343)
T PRK08775 100 FRLLAFDFIGADGSLDVPIDTADQADAIALLLDALGIARLHAFVGYSYG 148 (343)
T ss_pred cEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEEEEECHH
Confidence 345555555542 2334455555444432 11223345555555
Done!