Query 037057
Match_columns 230
No_of_seqs 175 out of 1014
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fak_A Ribosomal RNA large sub 100.0 1E-64 3.5E-69 425.9 18.7 157 74-230 3-163 (163)
2 1to0_A Hypothetical UPF0247 pr 100.0 4.3E-64 1.5E-68 423.4 17.8 155 76-230 1-159 (167)
3 1ns5_A Hypothetical protein YB 100.0 1.4E-63 4.7E-68 415.9 17.7 153 76-230 1-154 (155)
4 1o6d_A Hypothetical UPF0247 pr 100.0 1.4E-63 4.9E-68 418.9 17.5 152 75-230 2-153 (163)
5 2qmm_A UPF0217 protein AF_1056 96.9 0.00032 1.1E-08 60.2 2.4 64 134-208 117-184 (197)
6 3oii_A Essential for mitotic g 96.9 0.0014 4.7E-08 58.3 5.9 70 136-213 170-243 (253)
7 3aia_A UPF0217 protein MJ1640; 96.6 0.00068 2.3E-08 58.7 2.2 59 134-204 128-191 (211)
8 3o7b_A Ribosome biogenesis NEP 96.3 0.0018 6.1E-08 57.3 3.0 64 134-208 160-227 (244)
9 3ief_A TRNA (guanine-N(1)-)-me 96.1 0.011 3.7E-07 52.0 6.8 76 137-218 76-153 (233)
10 3quv_A TRNA (guanine-N(1)-)-me 95.9 0.015 5.1E-07 51.4 6.7 72 141-218 81-158 (246)
11 3knu_A TRNA (guanine-N(1)-)-me 95.8 0.017 5.8E-07 51.2 6.7 144 65-218 11-174 (253)
12 3ky7_A TRNA (guanine-N(1)-)-me 95.5 0.021 7.1E-07 51.1 6.0 72 141-218 103-176 (269)
13 1oy5_A TRNA (guanine-N(1)-)-me 95.4 0.047 1.6E-06 48.5 8.0 71 142-218 84-155 (257)
14 1ual_A TRNA (guanine-N(1)-)-me 94.6 0.071 2.4E-06 47.8 6.9 71 142-218 102-174 (274)
15 2qwv_A UPF0217 protein VC_A105 93.6 0.02 6.7E-07 49.6 1.2 60 133-203 125-188 (208)
16 4h3z_A TRNA (guanine-N(1)-)-me 93.0 0.13 4.5E-06 46.2 5.6 73 140-218 105-179 (276)
17 3kty_A Probable methyltransfer 91.6 1.5 5E-05 35.5 9.9 76 143-220 84-172 (173)
18 3bbd_A Ribosome biogenesis pro 91.4 0.069 2.4E-06 46.0 1.8 61 137-208 129-195 (205)
19 3ic6_A Putative methylase fami 85.7 1.4 4.8E-05 38.0 6.0 56 142-198 107-168 (223)
20 3onp_A TRNA/RRNA methyltransfe 84.3 3.4 0.00012 35.8 8.0 56 142-198 75-136 (249)
21 3dcm_X AdoMet, uncharacterized 83.6 2.8 9.7E-05 35.4 6.9 53 140-196 104-158 (192)
22 3ilk_A Uncharacterized tRNA/RR 80.1 3.8 0.00013 35.5 6.6 75 142-220 76-160 (244)
23 3n4j_A RNA methyltransferase; 72.8 3.5 0.00012 33.2 4.1 70 140-220 79-156 (165)
24 3sho_A Transcriptional regulat 71.7 33 0.0011 26.6 12.5 125 79-225 41-168 (187)
25 2xhz_A KDSD, YRBH, arabinose 5 70.2 26 0.00088 27.2 8.6 82 136-224 92-182 (183)
26 2gkg_A Response regulator homo 68.7 26 0.00088 24.1 9.8 86 75-181 3-89 (127)
27 3fxa_A SIS domain protein; str 66.3 28 0.00096 27.6 8.3 85 136-227 88-181 (201)
28 3u7r_A NADPH-dependent FMN red 64.0 9.4 0.00032 31.4 5.0 90 75-164 1-91 (190)
29 3fvw_A Putative NAD(P)H-depend 57.5 35 0.0012 27.3 7.4 91 76-167 3-94 (192)
30 4e7p_A Response regulator; DNA 57.4 52 0.0018 23.8 10.4 83 78-180 21-103 (150)
31 3syl_A Protein CBBX; photosynt 56.7 83 0.0029 26.0 10.1 126 79-211 69-213 (309)
32 3l8u_A SMU.1707C, putative rRN 56.0 17 0.00057 29.8 5.2 51 141-199 87-139 (182)
33 3kw2_A Probable R-RNA methyltr 51.0 38 0.0013 29.3 6.9 59 172-230 191-256 (257)
34 1v2x_A TRNA (GM18) methyltrans 50.0 10 0.00035 31.2 3.0 27 172-198 115-142 (194)
35 1ipa_A RRMH, RNA 2'-O-ribose m 49.9 24 0.00082 30.7 5.5 48 141-198 187-235 (274)
36 2jtq_A Phage shock protein E; 49.4 39 0.0013 23.0 5.6 40 139-184 39-78 (85)
37 1gmx_A GLPE protein; transfera 47.6 21 0.00073 25.6 4.1 45 135-184 52-96 (108)
38 3rht_A (gatase1)-like protein; 47.6 53 0.0018 28.4 7.3 42 141-185 51-92 (259)
39 1jeo_A MJ1247, hypothetical pr 47.1 95 0.0032 23.8 8.9 83 136-226 78-167 (180)
40 1zjr_A TRNA (guanosine-2'-O-)- 47.0 14 0.00046 30.9 3.3 27 172-198 119-146 (211)
41 1tq1_A AT5G66040, senescence-a 47.0 23 0.00078 26.5 4.3 47 133-184 74-120 (129)
42 3l80_A Putative uncharacterize 46.5 37 0.0013 26.9 5.7 29 155-183 92-120 (292)
43 2fsx_A RV0390, COG0607: rhodan 45.8 27 0.00093 26.6 4.7 43 139-186 78-120 (148)
44 2ha8_A TAR (HIV-1) RNA loop bi 45.1 13 0.00045 30.3 2.8 49 141-198 100-149 (184)
45 3hix_A ALR3790 protein; rhodan 44.8 10 0.00035 27.5 1.9 44 135-183 46-89 (106)
46 3gl9_A Response regulator; bet 44.0 80 0.0027 22.1 11.9 84 76-179 1-84 (122)
47 2i6d_A RNA methyltransferase, 43.3 16 0.00055 31.4 3.3 49 141-198 176-226 (257)
48 3kht_A Response regulator; PSI 43.0 88 0.003 22.2 9.8 73 76-166 4-76 (144)
49 2yva_A DNAA initiator-associat 42.7 1.2E+02 0.004 23.6 8.9 82 134-222 103-188 (196)
50 3svl_A Protein YIEF; E. coli C 42.0 68 0.0023 25.8 6.8 91 75-166 4-98 (193)
51 1dz3_A Stage 0 sporulation pro 41.8 87 0.003 21.8 10.7 86 76-180 1-86 (130)
52 1x7o_A Avirb, rRNA methyltrans 41.8 16 0.00054 32.1 3.0 45 144-198 207-252 (287)
53 3eme_A Rhodanese-like domain p 40.2 24 0.00081 25.1 3.3 42 135-182 50-91 (103)
54 4hs4_A Chromate reductase; tri 40.1 94 0.0032 25.1 7.4 91 75-166 6-99 (199)
55 1sxj_E Activator 1 40 kDa subu 40.1 1.5E+02 0.0052 24.9 9.0 66 141-209 134-200 (354)
56 1mkz_A Molybdenum cofactor bio 39.8 84 0.0029 25.0 6.9 25 157-181 55-79 (172)
57 3hzh_A Chemotaxis response reg 38.8 1.1E+02 0.0038 22.3 11.5 88 72-179 31-119 (157)
58 1x92_A APC5045, phosphoheptose 38.7 1.4E+02 0.0048 23.3 9.2 81 135-222 108-192 (199)
59 1qxn_A SUD, sulfide dehydrogen 38.5 36 0.0012 25.8 4.3 44 136-184 77-120 (137)
60 3e5y_A TRMH family RNA methylt 38.3 19 0.00066 28.6 2.8 55 135-199 71-129 (160)
61 1g5t_A COB(I)alamin adenosyltr 38.0 99 0.0034 25.7 7.2 60 132-196 110-175 (196)
62 1ehy_A Protein (soluble epoxid 35.9 26 0.0009 28.5 3.3 12 129-140 87-98 (294)
63 3etn_A Putative phosphosugar i 35.8 1.7E+02 0.006 23.6 10.7 86 136-226 102-196 (220)
64 3vk5_A MOEO5; TIM barrel, tran 35.5 77 0.0026 28.3 6.5 41 140-185 38-78 (286)
65 1gz0_A Hypothetical tRNA/RRNA 35.4 26 0.0009 30.0 3.3 49 140-198 177-226 (253)
66 3afi_E Haloalkane dehalogenase 34.2 26 0.00089 29.1 3.1 30 154-183 76-105 (316)
67 3trj_A Phosphoheptose isomeras 33.9 1.8E+02 0.0062 23.3 9.3 78 134-218 108-189 (201)
68 3nk6_A 23S rRNA methyltransfer 33.8 27 0.00091 30.5 3.2 49 140-198 191-241 (277)
69 3foj_A Uncharacterized protein 33.5 26 0.0009 24.8 2.6 42 135-182 50-91 (100)
70 1hzm_A Dual specificity protei 33.2 43 0.0015 25.2 4.0 49 136-185 87-140 (154)
71 2hpv_A FMN-dependent NADH-azor 32.7 1.8E+02 0.0061 22.8 9.4 39 75-114 1-45 (208)
72 2q62_A ARSH; alpha/beta, flavo 31.8 2.3E+02 0.0079 23.8 9.8 92 72-166 31-124 (247)
73 3oos_A Alpha/beta hydrolase fa 31.8 25 0.00084 27.1 2.3 8 176-183 94-101 (278)
74 3n53_A Response regulator rece 31.6 1.4E+02 0.0046 21.1 9.7 82 78-180 4-85 (140)
75 3heb_A Response regulator rece 31.6 1.4E+02 0.0049 21.4 11.1 90 76-181 3-99 (152)
76 3hmc_A Putative prophage lambd 31.6 1E+02 0.0034 25.0 6.2 54 127-180 72-127 (192)
77 4i19_A Epoxide hydrolase; stru 31.5 30 0.001 30.6 3.2 43 141-184 128-180 (388)
78 2c9o_A RUVB-like 1; hexameric 30.7 57 0.0019 29.6 4.9 57 144-204 298-369 (456)
79 2eel_A Cell death activator CI 30.2 49 0.0017 24.8 3.7 27 138-164 43-69 (91)
80 3tov_A Glycosyl transferase fa 30.2 1.9E+02 0.0065 25.1 8.1 80 129-210 170-258 (349)
81 3nhv_A BH2092 protein; alpha-b 30.0 63 0.0021 24.7 4.4 44 136-183 67-110 (144)
82 2zay_A Response regulator rece 30.0 1.5E+02 0.005 21.0 11.3 85 75-179 6-90 (147)
83 3r0v_A Alpha/beta hydrolase fo 29.9 62 0.0021 24.7 4.4 7 177-183 91-97 (262)
84 3ibt_A 1H-3-hydroxy-4-oxoquino 29.9 71 0.0024 24.6 4.8 12 130-141 76-87 (264)
85 1nri_A Hypothetical protein HI 29.7 2.7E+02 0.0092 23.9 9.5 87 136-229 136-230 (306)
86 2wj6_A 1H-3-hydroxy-4-oxoquina 29.6 49 0.0017 27.0 4.0 10 130-139 82-91 (276)
87 3flh_A Uncharacterized protein 29.5 57 0.0019 24.0 4.0 45 134-182 64-108 (124)
88 1k3r_A Conserved protein MT000 29.0 47 0.0016 29.3 3.9 74 141-224 183-258 (268)
89 1u02_A Trehalose-6-phosphate p 28.6 43 0.0015 27.3 3.5 36 144-181 3-48 (239)
90 3bf7_A Esterase YBFF; thioeste 28.0 49 0.0017 26.1 3.6 7 133-139 73-79 (255)
91 3vzx_A Heptaprenylglyceryl pho 27.9 74 0.0025 27.2 4.9 38 142-186 8-45 (228)
92 1t5b_A Acyl carrier protein ph 27.8 2.1E+02 0.007 22.0 9.8 40 75-115 1-45 (201)
93 2xua_A PCAD, 3-oxoadipate ENOL 27.6 39 0.0013 26.9 3.0 12 129-140 80-91 (266)
94 2qsj_A DNA-binding response re 27.4 1.7E+02 0.0058 20.9 9.1 72 77-166 3-75 (154)
95 3ial_A Prolyl-tRNA synthetase; 27.1 2E+02 0.0068 27.4 8.2 92 82-180 270-370 (518)
96 3gk5_A Uncharacterized rhodane 26.9 57 0.002 23.4 3.5 45 134-184 48-92 (108)
97 3ilm_A ALR3790 protein; rhodan 26.8 27 0.00093 26.8 1.8 44 135-183 50-93 (141)
98 3uk6_A RUVB-like 2; hexameric 26.4 1.1E+02 0.0039 25.9 5.9 57 143-203 191-261 (368)
99 1sqs_A Conserved hypothetical 26.3 2.6E+02 0.0089 22.6 10.3 39 75-114 1-42 (242)
100 1um8_A ATP-dependent CLP prote 26.0 1.5E+02 0.0053 25.5 6.8 28 183-211 255-282 (376)
101 1iup_A META-cleavage product h 25.8 54 0.0018 26.5 3.5 10 131-140 85-94 (282)
102 1t0i_A YLR011WP; FMN binding p 25.7 1.9E+02 0.0065 22.3 6.7 106 76-183 1-129 (191)
103 2eg4_A Probable thiosulfate su 25.7 83 0.0028 25.5 4.7 44 132-180 52-95 (230)
104 1sxj_D Activator 1 41 kDa subu 25.6 1.6E+02 0.0053 24.6 6.5 61 142-205 134-196 (353)
105 3pdw_A Uncharacterized hydrola 25.6 1.1E+02 0.0036 24.7 5.3 38 143-181 7-48 (266)
106 2yys_A Proline iminopeptidase- 25.5 1.1E+02 0.0037 24.7 5.4 11 130-140 84-94 (286)
107 1s8n_A Putative antiterminator 24.9 2.3E+02 0.0079 21.6 11.2 85 74-181 10-95 (205)
108 3qit_A CURM TE, polyketide syn 24.5 44 0.0015 25.5 2.6 9 175-183 97-105 (286)
109 2vzf_A NADH-dependent FMN redu 24.4 85 0.0029 24.8 4.4 107 75-185 2-117 (197)
110 3nhm_A Response regulator; pro 24.4 1.8E+02 0.0061 20.1 11.8 83 76-179 3-85 (133)
111 2jba_A Phosphate regulon trans 24.3 1.7E+02 0.0059 19.9 9.8 85 76-180 1-85 (127)
112 1srr_A SPO0F, sporulation resp 24.1 1.7E+02 0.006 19.9 12.0 83 75-179 1-83 (124)
113 3kda_A CFTR inhibitory factor 24.0 47 0.0016 26.1 2.7 8 132-139 87-94 (301)
114 2p9j_A Hypothetical protein AQ 23.9 2.2E+02 0.0074 20.9 6.6 52 143-195 10-76 (162)
115 1iqp_A RFCS; clamp loader, ext 23.8 2E+02 0.0068 23.5 6.8 67 140-210 109-177 (327)
116 3kxp_A Alpha-(N-acetylaminomet 23.6 77 0.0026 25.4 4.1 29 155-183 116-144 (314)
117 3cwo_X Beta/alpha-barrel prote 23.6 1E+02 0.0036 23.9 4.8 37 144-182 28-64 (237)
118 1vim_A Hypothetical protein AF 23.6 2.7E+02 0.0093 21.9 9.5 84 136-226 85-183 (200)
119 3r40_A Fluoroacetate dehalogen 23.6 40 0.0014 26.4 2.2 14 154-167 85-98 (306)
120 3fsg_A Alpha/beta superfamily 23.2 91 0.0031 23.7 4.2 9 80-88 25-33 (272)
121 3dtn_A Putative methyltransfer 23.1 2.7E+02 0.0092 21.7 7.9 77 134-220 62-138 (234)
122 3v48_A Aminohydrolase, putativ 22.8 58 0.002 26.0 3.1 12 130-141 71-82 (268)
123 3g9x_A Haloalkane dehalogenase 22.8 50 0.0017 25.8 2.6 12 155-166 80-91 (299)
124 1xpj_A Hypothetical protein; s 22.3 1.5E+02 0.005 21.9 5.1 38 144-182 3-51 (126)
125 1m3s_A Hypothetical protein YC 22.2 2.7E+02 0.0091 21.3 9.7 84 136-226 75-173 (186)
126 3sty_A Methylketone synthase 1 22.1 91 0.0031 23.9 4.0 7 80-86 16-22 (267)
127 3e0x_A Lipase-esterase related 22.0 97 0.0033 23.1 4.1 27 155-183 62-94 (245)
128 2oqr_A Sensory transduction pr 21.9 2.8E+02 0.0095 21.4 11.5 83 75-180 2-84 (230)
129 1rkq_A Hypothetical protein YI 21.9 1.3E+02 0.0044 24.8 5.2 38 144-182 7-49 (282)
130 3f1y_A Mannosyl-3-phosphoglyce 21.9 4.3E+02 0.015 23.6 10.5 103 75-180 93-217 (387)
131 4fcw_A Chaperone protein CLPB; 21.8 1.4E+02 0.0047 24.6 5.4 27 183-210 198-224 (311)
132 2qvb_A Haloalkane dehalogenase 21.8 70 0.0024 24.9 3.3 7 80-86 32-38 (297)
133 3bwx_A Alpha/beta hydrolase; Y 21.5 50 0.0017 26.3 2.5 7 133-139 89-95 (285)
134 2k0z_A Uncharacterized protein 21.5 67 0.0023 23.1 3.0 44 137-186 52-95 (110)
135 1xx6_A Thymidine kinase; NESG, 21.5 1.4E+02 0.0048 24.1 5.3 63 133-199 73-142 (191)
136 1tk9_A Phosphoheptose isomeras 21.4 2.7E+02 0.0094 21.1 7.9 60 134-200 104-163 (188)
137 1rtt_A Conserved hypothetical 21.3 2.9E+02 0.0098 21.4 9.1 39 75-114 6-45 (193)
138 3gt7_A Sensor protein; structu 21.3 2.4E+02 0.0081 20.4 12.1 83 77-179 7-89 (154)
139 3cnb_A DNA-binding response re 21.2 2.1E+02 0.0073 19.8 12.2 72 76-166 7-79 (143)
140 1brt_A Bromoperoxidase A2; hal 21.0 57 0.0019 26.0 2.7 8 176-183 93-100 (277)
141 4dnp_A DAD2; alpha/beta hydrol 20.5 91 0.0031 23.7 3.7 7 177-183 94-100 (269)
142 3cvj_A Putative phosphoheptose 20.5 2.7E+02 0.0091 22.6 6.8 82 137-222 105-209 (243)
143 3fla_A RIFR; alpha-beta hydrol 20.5 1E+02 0.0036 23.6 4.1 13 131-143 76-88 (267)
144 2xbl_A Phosphoheptose isomeras 20.4 3E+02 0.01 21.1 8.5 80 134-220 110-190 (198)
145 1mj5_A 1,3,4,6-tetrachloro-1,4 20.3 69 0.0024 25.1 3.0 30 154-183 80-110 (302)
146 2vat_A Acetyl-COA--deacetylcep 20.2 97 0.0033 27.0 4.3 65 139-203 140-236 (444)
147 4axq_A Archaemetzincin; metall 20.0 84 0.0029 25.4 3.5 35 75-114 3-37 (163)
No 1
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=100.00 E-value=1e-64 Score=425.85 Aligned_cols=157 Identities=26% Similarity=0.480 Sum_probs=148.5
Q ss_pred cCccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCC--CCC--cHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 037057 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK--NTG--DVKAQIKDEDMAVMNIISSDDWVVMLDE 149 (230)
Q Consensus 74 ~~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~--~~~--~~~~~~~~E~e~Il~~i~~~~~vIlLDe 149 (230)
..|+|+|+||||++++|++++++||.|||++||+++++|+++.+. +.+ +.+.++++||++|++++++++++|+||+
T Consensus 3 ~~Mki~ii~VGk~k~~~~~~~i~eY~kRl~~~~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg~~il~~i~~~~~vI~LD~ 82 (163)
T 4fak_A 3 EFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEI 82 (163)
T ss_dssp SCCEEEEEEESCCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTCCTTSEEEEEEE
T ss_pred cccEEEEEEecCcCcHHHHHHHHHHHHHccCcCCeEEEEecccccccccchhhHHHHHHHHHHHHHHhCCCCCEEEEEcC
Confidence 469999999999999999999999999999999999999997543 222 3456789999999999999999999999
Q ss_pred CCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037057 150 NGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229 (230)
Q Consensus 150 ~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYH 229 (230)
+||++||++||++|++|+++|.++++|+||||+|++++++++||.+||||+|||||||+||||+|||||||||++|||||
T Consensus 83 ~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~rA~~~lSlS~mTfpHqL~RliL~EQlYRA~tIl~g~PYH 162 (163)
T 4fak_A 83 QGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYH 162 (163)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHHCSEEEESCSSCCCHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHHhcCceEEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 037057 230 H 230 (230)
Q Consensus 230 k 230 (230)
|
T Consensus 163 k 163 (163)
T 4fak_A 163 K 163 (163)
T ss_dssp C
T ss_pred C
Confidence 7
No 2
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=100.00 E-value=4.3e-64 Score=423.41 Aligned_cols=155 Identities=30% Similarity=0.527 Sum_probs=143.6
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCC--C--cHHHHHHHHHHHHHhhcCCCCeEEEEeCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT--G--DVKAQIKDEDMAVMNIISSDDWVVMLDENG 151 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~--~--~~~~~~~~E~e~Il~~i~~~~~vIlLDe~G 151 (230)
|+|+|+||||++++|++++++||.|||++||+++++|+++.+... . +.+.++++|+++|++++++++++|+||++|
T Consensus 1 Mki~Ii~VGk~k~~~~~~~i~eY~kRl~~~~~lei~ev~~~k~~~~~~~~~~~~~~~~E~~~il~~i~~~~~vI~LD~~G 80 (167)
T 1to0_A 1 MNINIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDAHVIALAIEG 80 (167)
T ss_dssp CEEEEEEESCCCCHHHHHHHHHHHHHHTTTSEEEEEEECCCCC---------CHHHHHHHHHHHTTSCTTSEEEEEEEEE
T ss_pred CeEEEEEEcccCcHHHHHHHHHHHHHcCccCCceEEEecCccCccccccccHHHHHHHHHHHHHhhcCCCCEEEEEcCCC
Confidence 899999999999999999999999999999999999999755422 2 456678999999999999889999999999
Q ss_pred CCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037057 152 LDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 152 k~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYHk 230 (230)
|++||++||++|++|+++|.++++|+||||+|++++++++||.+||||+||||||||||||+|||||||||++||||||
T Consensus 81 k~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA~~~lSlS~mTfpHqL~RliL~EQiYRA~tIl~g~PYHr 159 (167)
T 1to0_A 81 KMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK 159 (167)
T ss_dssp EECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEEEESCSSCCCHHHHHHHHHHHHHHHHHHHTSCCC--
T ss_pred CcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhhCcEEEccCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 9999999999999999999889999999999999999999999999999999999999999999999999999999997
No 3
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=100.00 E-value=1.4e-63 Score=415.86 Aligned_cols=153 Identities=25% Similarity=0.438 Sum_probs=144.8
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCC-CCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~-~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
|+|+|+||||++++|++++++||.|||++||+++++|+++.+.. ..+.+.++++|+++|+++++++ ++|+||++||++
T Consensus 1 Mki~ii~VGk~k~~~~~~~i~eY~kRl~~~~~~e~~ev~~~~~~~~~~~~~~~~~E~~~il~~i~~~-~vi~Ld~~Gk~~ 79 (155)
T 1ns5_A 1 MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKN-RIVTLDIPGKPW 79 (155)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHTTSCTTSCEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHTTS-EEEEEEEEEECC
T ss_pred CeEEEEEEeccCcHHHHHHHHHHHHHcCccCCceEEEecCCcCcccccHHHHHHHHHHHHHHhcCCC-cEEEEcCCCCcC
Confidence 89999999999999999999999999999999999999975542 2456778999999999999875 899999999999
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYHk 230 (230)
||++||++|++|+++| ++++|+||||+|++++++++||.+||||+||||||||||||+|||||||||++||||||
T Consensus 80 sS~~fA~~l~~~~~~g-~~i~FvIGG~~Gl~~~v~~rA~~~lSlS~mT~pHql~RliL~EQiYRA~~Il~g~PYHk 154 (155)
T 1ns5_A 80 DTPQLAAELERWKLDG-RDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHR 154 (155)
T ss_dssp CHHHHHHHHHHHHHHC-SCEEEEECBTTBCCHHHHHHCSEEECCCSSCCCHHHHHHHHHHHHHHHHHHHTTCTTC-
T ss_pred CHHHHHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHhhCceEEccCCCCcHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999997
No 4
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=100.00 E-value=1.4e-63 Score=418.92 Aligned_cols=152 Identities=28% Similarity=0.582 Sum_probs=142.3
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
+|+|+|+||||++ +|++++++||.|||++||+++++|+++.+. .+.+.++++|+++|++++++++++|+||++||++
T Consensus 2 ~Mki~IiaVGk~k-~~~~~~i~eY~kRl~~~~~lei~ev~~~k~--~~~~~~~~~E~~~il~~i~~~~~vI~LD~~Gk~~ 78 (163)
T 1o6d_A 2 SLRVRIAVIGKLD-GFIKEGIKHYEKFLRRFCKPEVLEIKRVHR--GSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEV 78 (163)
T ss_dssp -CEEEEEEESCCC-HHHHHHHHHHHHHHTTTCEEEEEEECCCCC--SCHHHHHHHHHHHHHTTCCTTCEEEEEEEEEEEC
T ss_pred CcEEEEEEecCcc-HHHHHHHHHHHHHcCccCCceEEEecCccc--ccHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCcC
Confidence 5999999999999 999999999999999999999999998665 4567789999999999999888999999999999
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYHk 230 (230)
||++||++|++|+++| ++++|+||||+|++++++++||.+||||+||||||||||||+|||||||||++||||||
T Consensus 79 sS~~fA~~l~~~~~~G-~~i~FvIGGa~Gl~~~v~~rAd~~lSlS~mTfpHqL~RliL~EQiYRA~tIl~g~PYHk 153 (163)
T 1o6d_A 79 SSEEFADFLKDLEMKG-KDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHY 153 (163)
T ss_dssp CHHHHHHHHHHHHHHT-CCEEEEECCTTCCCGGGGGGCSEEEECCSSCCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CHHHHHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHhhCceEEccCCCCcHHHHHHHHHHHHHHHHHHHCCCCCcC
Confidence 9999999999999999 79999999999999999999999999999999999999999999999999999999997
No 5
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=96.93 E-value=0.00032 Score=60.19 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=49.8
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHH----HHhcccceEEeecCCCcHHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK----MRERANISIKLSSMVLNHQIA 208 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~----v~~rAd~~LSLS~mTfpHqLa 208 (230)
+++.+..+..+++|||+|+.+...+| ..+.+|++||..|++++ +.+.|+.++|+++-.+--.-+
T Consensus 117 ll~e~~~~~~v~~L~E~G~~i~~~~~-----------~~~~~fvlGdH~~f~~e~~~~l~~~~~~~iSigp~~L~A~~v 184 (197)
T 2qmm_A 117 LIEELSEKYSIIYLKEDGVDISNAQL-----------PPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQC 184 (197)
T ss_dssp HHHHHHHHSEEEEEEEEEEEGGGSCC-----------CSSEEEEEECTTCCCHHHHHHHHTTCSEEEECCSSCCCHHHH
T ss_pred HHHHhhcCCcEEEEcCCCCCCchhhc-----------CCCCEEEEeCCCCCCHHHHHHHHHhcCeEEEECCchhHHHHH
Confidence 44444323459999999998877765 14799999999999999 899999999999977654333
No 6
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=96.86 E-value=0.0014 Score=58.28 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=55.7
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCC---CCHHHHhcccceEEeecCCCcHHHHHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYG---HGPKMRERANISIKLSSMVLNHQIALLV 211 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~G---ls~~v~~rAd~~LSLS~mTfpHqLaRLI 211 (230)
..+++++..|+|+++|+.++..+|.+.+.+ ...++|+||| |+| +++++ .+..+|+|+..++-..+==.
T Consensus 170 d~Lp~~~~kI~ls~~g~~v~~~~~~~~l~~-----~~~i~vvVGafahG~~~f~~~~---~~e~iSIs~ypLsa~~~c~k 241 (253)
T 3oii_A 170 DHLPTKCRKVTLSFDAPVIRVQDYIEKLDD-----DESICVFVGAMARGKDNFADEY---VDEKVGLSNYPLSASVACSK 241 (253)
T ss_dssp GTSCSSEEEEEECTTSCBCCHHHHHHTSCT-----TCEEEEEEECSSSCCSCTTTTT---CSEEEBSCSSCCCHHHHHHH
T ss_pred HhCCCCCeEEEEccCCCccCHHHHHHhccc-----CCCeEEEEeeeCCCCCcccchh---cceeEEEeCCChhHHHHHHH
Confidence 457778889999999999998999887654 2479999998 999 55554 67899999999998766433
Q ss_pred HH
Q 037057 212 LV 213 (230)
Q Consensus 212 Ll 213 (230)
++
T Consensus 242 ic 243 (253)
T 3oii_A 242 FC 243 (253)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 7
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=96.64 E-value=0.00068 Score=58.72 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHhhcCCCC-eEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHH---H-HhcccceEEeecCCCc
Q 037057 134 VMNIISSDD-WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPK---M-RERANISIKLSSMVLN 204 (230)
Q Consensus 134 Il~~i~~~~-~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~---v-~~rAd~~LSLS~mTfp 204 (230)
+++.+..+. -+++|||+|+.+...+| .+.+|++|+..|++++ + .+.|+.++|+++-.+-
T Consensus 128 ll~e~~~~~~~v~~L~E~G~~i~~~~~------------~~~~fvlGdH~~f~~e~~~~L~~~~~~~iSigp~~L~ 191 (211)
T 3aia_A 128 LVLEKLEEGKNIYYLHMNGEDVENVDI------------ENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELH 191 (211)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEGGGCCC------------CSEEEEEECSSCSCHHHHHHHHHTTCEEEECCSSCCC
T ss_pred HHHHHhhcCCcEEEEcCCCCCCccccc------------CCcEEEEECCCCCCHHHHHHHHhhCCeEEEECCcchH
Confidence 444443233 49999999998877665 3699999999999998 6 6778899999998773
No 8
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0018 Score=57.30 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=52.2
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCC-CCHHHHhcc--cceEEeecCCCcHHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYG-HGPKMRERA--NISIKLSSMVLNHQIA 208 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~G-ls~~v~~rA--d~~LSLS~mTfpHqLa 208 (230)
+...++++ ..|+|+++|+.++..+|++.+. +|+||| |.| +++++.+.+ +..+|+|+..++-..+
T Consensus 160 l~~~lp~~-~~I~lS~~G~~v~~~~~~~~~~----------~~vIGafphGdf~~~~~~~~~~~~~iSIs~~pLsa~~v 227 (244)
T 3o7b_A 160 LRDIVRGR-DVLLFREKGGRFEFSELLDGDV----------AVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYV 227 (244)
T ss_dssp HHHHTTTS-EEEEEEEEEECCCHHHHTSSSE----------EEEEECSSSSCCCHHHHHHHCSEEEECCCSSCCCHHHH
T ss_pred HHHhcCCC-cEEEEccCCCcCCHHHHhhcCC----------EEEECcccCCCccHhhhhhccCccEEEEeCCChHHHHH
Confidence 33467777 8999999999999888865542 999999 889 678888877 8899999998887665
No 9
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=96.12 E-value=0.011 Score=51.97 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=64.5
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCcH-HHHHHHHHH
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLNH-QIALLVLVE 214 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfpH-qLaRLILlE 214 (230)
.+.....+|.|.++|+.++ .+.|+.|.+ ..+++|+-|==.|+++.+++ .+|+.+|+++..++= ||+-+++++
T Consensus 76 ~~~~~~~vI~lsP~G~~f~-Q~~a~eLa~-----~~~lillCGrYEGiDeRv~~~~vdeEiSIGDyVLtGGElaAmv~iD 149 (233)
T 3ief_A 76 SCPNDSPRLLMSPRGRLLN-QAYARSLAR-----SSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLD 149 (233)
T ss_dssp TSCCCSCEEEEEEEEEECC-HHHHHHHTT-----SSEEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHHHHHHHHH
T ss_pred HhhcCCCEEEECCCCCccC-HHHHHHHHC-----CCCEEEEecccccHHHHHHHhhCceEeeeccEEeeCchHHHHHHHH
Confidence 3433467999999999997 566777765 25899999999999999998 799999999999985 999999999
Q ss_pred HHHH
Q 037057 215 QLYR 218 (230)
Q Consensus 215 QIYR 218 (230)
-+-|
T Consensus 150 Av~R 153 (233)
T 3ief_A 150 AIVR 153 (233)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8776
No 10
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus}
Probab=95.90 E-value=0.015 Score=51.42 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=63.3
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-----cccceEEeecCCCcH-HHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-----RANISIKLSSMVLNH-QIALLVLVE 214 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-----rAd~~LSLS~mTfpH-qLaRLILlE 214 (230)
+..+|.|.++|+.++ .+.|+.|.+ ..+++|+-|==.|+++.+++ .+|+.+|+++..++= ||+-+++++
T Consensus 81 ~~~vI~lsP~G~~f~-Q~~a~eLa~-----~~~lillCGrYEGiDeRv~e~~~~~~vdeEiSIGDyVLtGGElaAmvliD 154 (246)
T 3quv_A 81 ETLLVVPTPAGYPFT-QETAWQWST-----EDHLVIACGRYEGIDQRVADDAATRMRVREVSIGDYVLNGGEAAALVIIE 154 (246)
T ss_dssp TCEEEEEEEEEEECC-HHHHHHHTT-----CSEEEEECCBTTCBCHHHHHHHTTTSEEEEEESSSSCCSBSHHHHHHHHH
T ss_pred CCcEEEECCCCCccC-HHHHHHHhC-----CCCEEEEeccccchhHHHHhccccccceEEEeeccEEeeCchHHHHHHHH
Confidence 468999999999997 566777765 25899999999999999998 789999999999986 999999999
Q ss_pred HHHH
Q 037057 215 QLYR 218 (230)
Q Consensus 215 QIYR 218 (230)
-+-|
T Consensus 155 Av~R 158 (246)
T 3quv_A 155 AVLR 158 (246)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8776
No 11
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} PDB: 4ig6_A*
Probab=95.81 E-value=0.017 Score=51.24 Aligned_cols=144 Identities=11% Similarity=0.113 Sum_probs=88.2
Q ss_pred ccccccccCcCccEEEEEEcC-CCChHHHHHHHHHHhhhcCCCCceEEEeecC---CC--------CC--C---cHHHH-
Q 037057 65 GSFISYNCKRALPIRVITVGK-KRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN---PK--------NT--G---DVKAQ- 126 (230)
Q Consensus 65 ~~~~~~~~~~~MkI~IiaVGK-~k~~~~~~~i~eY~KRL~~y~~leiieik~~---~~--------~~--~---~~~~~- 126 (230)
+..+.+....+|+|.|+.+=- .-+.++...+--=+ .=+....++++++++- +. +. + .++..
T Consensus 11 ~~~~~~~~~~~MridvlTLFPemf~~~l~~sI~gRA-~~~gl~~i~~~n~Rdft~dkhr~VDD~PyGGGaGMVm~~ePl~ 89 (253)
T 3knu_A 11 TLEAQTQGPGSMIFNVLTIFPQMFPGPLGVSNLGSA-LKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLG 89 (253)
T ss_dssp ----------CEEEEEEESCGGGCSGGGGSHHHHHH-HHHTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHH
T ss_pred ceeeccCCCCceEEEEEEEChHHhhhHhhhhHHHHH-HHCCCeEEEEEcchhccCCCCCccCCCCCCCCCccEecHHHHH
Confidence 344455566789999998632 22333333321111 1123567777777631 11 00 1 01221
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCcH
Q 037057 127 IKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLNH 205 (230)
Q Consensus 127 ~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfpH 205 (230)
..-++ +.+. .+...+|.|.++|+.++ .+.|+.|.+ ..+++|+-|==.|+++.+++ .+|+.+|+++..++=
T Consensus 90 ~Al~~--~~~~-~~~~~vI~lsP~G~~f~-Q~~a~eLa~-----~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtG 160 (253)
T 3knu_A 90 RCIDE--VLSL-HPNTKLMFTSPRGVSFT-QDIARQTMN-----FDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSG 160 (253)
T ss_dssp HHHHH--HHHH-CTTCEEEEEEEEEEECC-HHHHHHHHT-----CSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSS
T ss_pred HHHHH--HHhc-CCCCcEEEECCCCCccC-HHHHHHHhC-----CCCEEEEecccccHHHHHHHhhCceEeeeccEEeeC
Confidence 11121 1111 34568999999999997 566777765 25899999999999999998 799999999999986
Q ss_pred -HHHHHHHHHHHHH
Q 037057 206 -QIALLVLVEQLYR 218 (230)
Q Consensus 206 -qLaRLILlEQIYR 218 (230)
||+-+++++-+-|
T Consensus 161 GElaAmvliDAv~R 174 (253)
T 3knu_A 161 GELAAMVIIDTCVR 174 (253)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHH
Confidence 9999999998776
No 12
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=95.49 E-value=0.021 Score=51.09 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=63.2
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCcH-HHHHHHHHHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLNH-QIALLVLVEQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfpH-qLaRLILlEQIYR 218 (230)
...+|.|+++|+.++ .+.|+.|.+ ..+++|+-|==.|+++.+++ .+|+.+|+++..++= ||+-+++++-+-|
T Consensus 103 ~~~vI~lsP~G~~f~-Q~~a~eLa~-----~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~R 176 (269)
T 3ky7_A 103 QARVILMCPQGEPFS-HQKAVELSK-----ADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVR 176 (269)
T ss_dssp TSEEEEEEEEEEECC-HHHHHHHTT-----CSEEEEECCCCSCBCHHHHHHTCCEEEESSSSCCSCSHHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCccC-HHHHHHHHC-----CCCEEEEecccccHHHHHHHhhCcEEeeeccEEeeCchHHHHHHHHHHHH
Confidence 468999999999997 566777765 25899999999999999998 799999999999986 9999999998776
No 13
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Probab=95.40 E-value=0.047 Score=48.54 Aligned_cols=71 Identities=17% Similarity=0.379 Sum_probs=62.4
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
..+|.|+++|+.++- +.|+.|.+ ..+++|+-|==.|+++.+++.+|+.+|+++..++ =|++-+++++-+-|
T Consensus 84 ~~vI~lsP~G~~f~Q-~~a~eLa~-----~~~lillCGrYEGiDeRv~e~vdeEiSIGDyVLtGGElaAmvliDAv~R 155 (257)
T 1oy5_A 84 PFVLITEPWGEKLNQ-KLVNELSK-----KERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVIDAVSR 155 (257)
T ss_dssp CEEEEECTTBCCCCH-HHHHHHHT-----CSEEEEEECBTTCBCGGGGGGCCEECCBCSSCCSBSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcCCH-HHHHHHhC-----CCCEEEEeccccchhHHHHhhcceEeecccEEecCccHHHHHHHHHHHH
Confidence 579999999999985 56666654 2689999999999999999999999999999998 59999999998877
No 14
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A*
Probab=94.60 E-value=0.071 Score=47.79 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=61.7
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHHH
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLYR 218 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIYR 218 (230)
..+|.|.++|+.++- +.|+.|.+ ..+++|+-|==.|+++.+++ .+|+.+|+++..++ =||+-+++++-+-|
T Consensus 102 ~~vI~lsP~G~~f~Q-~~a~eLa~-----~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~R 174 (274)
T 1ual_A 102 AKVIYLSPQGRKLDQ-GGVTELAQ-----NQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVAR 174 (274)
T ss_dssp CEEEEEEEEEEECCH-HHHHHHTT-----CSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcCCH-HHHHHHHC-----CCCEEEEeccccchHHHHHhhcCcEEEecccEEecCccHHHHHHHHHHHH
Confidence 479999999999985 56666654 26899999999999999997 79999999999998 58999999998876
No 15
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=93.56 E-value=0.02 Score=49.57 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=39.0
Q ss_pred HHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHH----HhcccceEEeecCCC
Q 037057 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKM----RERANISIKLSSMVL 203 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v----~~rAd~~LSLS~mTf 203 (230)
.+++.+..+..++.|||+|+.+...+|. .+.+||.|-..|++++- .+.++.++||||..+
T Consensus 125 ~ll~e~~~~~~ly~L~e~G~di~~~~~~-----------~~~~FvLgDH~g~~~eee~~L~~~~~~~iSlGP~~l 188 (208)
T 2qwv_A 125 ALLGELAEHHSLYMMDKKGDSIRDIKIG-----------PNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKML 188 (208)
T ss_dssp HHHHHHHTTSEEEEEEEEEEETTTSCCC-----------SSEEEEECC----------CTTTTTCEEEECCSSCC
T ss_pred HHHHHHHhcCcEEEEeCCCcCHhhccCC-----------CCCEEEEcCCCCCCHHHHHHHHhcCCeEEEeCchHH
Confidence 4444554445699999999998776432 47999999999999772 335668999999887
No 16
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=92.98 E-value=0.13 Score=46.15 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHh-cccceEEeecCCCc-HHHHHHHHHHHHH
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRE-RANISIKLSSMVLN-HQIALLVLVEQLY 217 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~-rAd~~LSLS~mTfp-HqLaRLILlEQIY 217 (230)
++..+|.|.++|+.++- +.|+.|.+ ..+++|+-|==.|+++.+++ ..|+.+|+++..++ =|++-++++|-+-
T Consensus 105 ~~~~vI~lsP~G~~f~Q-~~a~~La~-----~~~liliCGrYEGiDeRvie~~vdeEiSIGDyVLsGGElaAmvliDav~ 178 (276)
T 4h3z_A 105 GGARVVMMSPQGATLNH-DKVMRFAA-----EPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVV 178 (276)
T ss_dssp CSCEEEEEEEEEEECCH-HHHHHHHT-----SSEEEEECCCSSEECHHHHHHHCCEEEESSSSCCSCSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCeeeh-HHHHHhhc-----cCCEEEEeccccchhHHHHhccCCeEEEecCEEeeCccHHHHHHHHHHH
Confidence 45789999999999986 55666654 25899999999999999986 58999999999998 5999999999887
Q ss_pred H
Q 037057 218 R 218 (230)
Q Consensus 218 R 218 (230)
|
T Consensus 179 R 179 (276)
T 4h3z_A 179 R 179 (276)
T ss_dssp H
T ss_pred H
Confidence 7
No 17
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=91.57 E-value=1.5 Score=35.53 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=49.1
Q ss_pred eEEEEeCCCCC-----CChHHHHHHHh---hhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEeecC----CCcHHHHH
Q 037057 143 WVVMLDENGLD-----IGSEQMAELMG---DAGSTGASRISFCIGG-PYGHGPKMRERANISIKLSSM----VLNHQIAL 209 (230)
Q Consensus 143 ~vIlLDe~Gk~-----lsS~efA~~L~---~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS~m----TfpHqLaR 209 (230)
+++..+.+++. ++-++.++.+. +.. -..++++++|. ..|+++++++.||..+++--- -+.=-.|-
T Consensus 84 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvs~Aa 161 (173)
T 3kty_A 84 LAFALTTRVRDLGPPPCDIREAAGLARRHLDDT--EAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQAL 161 (173)
T ss_dssp EEEEEECC-----CCCEEHHHHHHHHHHHHHHS--SSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHH
T ss_pred eEEEEccccccCCCCccCHHHHHHHHhhhhccc--cCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCeEeHHHHH
Confidence 78888887653 45667777776 432 23579999999 899999999999988764311 11112344
Q ss_pred HHHHHHHHHHH
Q 037057 210 LVLVEQLYRSW 220 (230)
Q Consensus 210 LILlEQIYRA~ 220 (230)
-|++=+++|++
T Consensus 162 aI~lye~~r~~ 172 (173)
T 3kty_A 162 QLAAWELRYAL 172 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45555577775
No 18
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=91.40 E-value=0.069 Score=45.96 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=47.1
Q ss_pred hcCCC--CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCC-CHHHHhcccce--EEeecCCCcHHHH
Q 037057 137 IISSD--DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGH-GPKMRERANIS--IKLSSMVLNHQIA 208 (230)
Q Consensus 137 ~i~~~--~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gl-s~~v~~rAd~~--LSLS~mTfpHqLa 208 (230)
.++++ +.+|+|+++|+.++..+|+ . + + +|+||| |+|- ++++.+-++.. +|+|+-.++-..+
T Consensus 129 ~lp~~~~~~~i~ls~~g~~v~~~~~~---~---~----~-~~~IGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v 195 (205)
T 3bbd_A 129 LLNEINAKKIAIMTKTGKLTHPKLLK---E---Y----D-TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTV 195 (205)
T ss_dssp HHHHTTCCEEEEEEEEEEECCGGGGG---G---C----S-EEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHH
T ss_pred hcCCCCCceEEEEcCCCcccCHHHHh---C---C----C-EEEEccccCCCcchhhhhhhccccEEEEeCCChhHHHH
Confidence 34444 7899999999999888887 1 1 2 999999 7875 45567788889 9999988876543
No 19
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=85.67 E-value=1.4 Score=38.02 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=41.9
Q ss_pred CeEEEEeCCCCC-----CChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 142 DWVVMLDENGLD-----IGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 142 ~~vIlLDe~Gk~-----lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
.+++..+.+|+. ++-+++++.+.+.... ...+++|+|. ..|+++++++.||..+++
T Consensus 107 ~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~-~~~~~lv~G~E~~Gl~~~~~~~~d~~v~I 168 (223)
T 3ic6_A 107 TIACALTSRRREITAPLQTPRDLVPELLQAANR-GEKVALVFGNETFGLSIEEVRACNRLMTI 168 (223)
T ss_dssp EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHT-TCEEEEEECBTTTBCCHHHHHTCSEEECC
T ss_pred CeEEEEeccCCcccccccCHHHHHHHHHHhhcc-cCCEEEEECCCCCCCCHHHHHhCceEEEe
Confidence 578999998876 4557887766443211 2479999999 899999999999987753
No 20
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=84.26 E-value=3.4 Score=35.78 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.5
Q ss_pred CeEEEEeCCCCCC-----ChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 142 DWVVMLDENGLDI-----GSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 142 ~~vIlLDe~Gk~l-----sS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
.++++.+.+++.+ +.+++++.+......+ ..+++|+|. ..|+++++++.||..+++
T Consensus 75 ~~v~att~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~aLVfG~E~~GLs~e~l~~~d~~v~I 136 (249)
T 3onp_A 75 DYVFATTARGRELTKPVMTPERAMAHGRALTGEG-RRVGILFGPERTGLENEDVALANAIVTV 136 (249)
T ss_dssp SEEEEEESSCCCSSSCEECHHHHHHHHHHHHHTT-CCEEEEECCTTTCCCHHHHTTSSEEEEC
T ss_pred CeEEEEcCCCCCCCcccCCHHHHHHHHHHhhccC-CCEEEEECCCcCCCCHHHHHhCCeEEEE
Confidence 5788888887764 5678888886654433 469999999 899999999999988765
No 21
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=83.63 E-value=2.8 Score=35.43 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=43.5
Q ss_pred CCCeEEEEeCC--CCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceE
Q 037057 140 SDDWVVMLDEN--GLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196 (230)
Q Consensus 140 ~~~~vIlLDe~--Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~L 196 (230)
...++|..+.+ +..++-+++++++.. ..+.+.++.|-..||++|.+++||..+
T Consensus 104 ~~p~vvaTsAr~~~~~i~~~el~~~i~~----~~~pvalvFG~~~GLtneel~~cd~~l 158 (192)
T 3dcm_X 104 ERPLIFFTSAKKRENDISFEEGRRIIIE----TEKPVLILLGTGWGLPDEILEISDYVL 158 (192)
T ss_dssp SCCEEEECCSSCCSSCBCHHHHHHHHHH----CCSCEEEEECCTTCCCHHHHTTCSEEB
T ss_pred CccEEEEeCCCcCCCCCCHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHhcCEEE
Confidence 34578888865 357899999998863 235799999999999999999999988
No 22
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=80.06 E-value=3.8 Score=35.51 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=50.7
Q ss_pred CeEEEEeCCCCCC-----ChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEeecC----CCcHHHHHHH
Q 037057 142 DWVVMLDENGLDI-----GSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKLSSM----VLNHQIALLV 211 (230)
Q Consensus 142 ~~vIlLDe~Gk~l-----sS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSLS~m----TfpHqLaRLI 211 (230)
.++|+.+.+++.+ +..+.++.+.+. ...+++|+|. ..|+++++++.||..+++--- .+.=-.|--|
T Consensus 76 ~~vvatt~~~~~~~~~~~~p~~~~~~~~~~----~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI 151 (244)
T 3ilk_A 76 SLVIGTSARLRHLQNTLIEPRECAEKVVAY----KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQL 151 (244)
T ss_dssp SEEEEECCCCGGGTTTEECHHHHHHHHHHC----SSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHH
T ss_pred CeEEEEccCCCCCCcccCCHHHHHHHHhhc----CCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCeeeHHHHHHH
Confidence 4788888887654 456777777654 2579999999 899999999999987754210 1111234444
Q ss_pred HHHHHHHHH
Q 037057 212 LVEQLYRSW 220 (230)
Q Consensus 212 LlEQIYRA~ 220 (230)
++=+++|+.
T Consensus 152 ~lyE~~rq~ 160 (244)
T 3ilk_A 152 VSYELRMAF 160 (244)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444567764
No 23
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=72.80 E-value=3.5 Score=33.21 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred CCCeEEEEeCCCCC-CChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhc--ccceEEeecC----CCcHHHHHHH
Q 037057 140 SDDWVVMLDENGLD-IGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRER--ANISIKLSSM----VLNHQIALLV 211 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~-lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~r--Ad~~LSLS~m----TfpHqLaRLI 211 (230)
.+..++.++.+|.. +. +.. -...+++++|. ..|+++++++. ||..+++--- -+.=-.|--|
T Consensus 79 ~g~~i~~~~~~~~~~~~---------~~~--~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvavAaaI 147 (165)
T 3n4j_A 79 QPARLFALTTKGTPAHS---------AVS--YQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSV 147 (165)
T ss_dssp SCTTEEEECTTCSSBTT---------TSC--CCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEEEcCCCcchh---------hcc--CCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCCCCCceeeHHHHHHH
Confidence 35678999987743 22 211 12469999999 89999999999 8988776311 1222344445
Q ss_pred HHHHHHHHH
Q 037057 212 LVEQLYRSW 220 (230)
Q Consensus 212 LlEQIYRA~ 220 (230)
++=+++|..
T Consensus 148 ~lye~~rq~ 156 (165)
T 3n4j_A 148 VVYEAWRQL 156 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 554566643
No 24
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=71.73 E-value=33 Score=26.64 Aligned_cols=125 Identities=11% Similarity=0.043 Sum_probs=78.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChHH
Q 037057 79 RVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQ 158 (230)
Q Consensus 79 ~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~e 158 (230)
+|+++|--.......-...++.++.. ...-+.+.. . +-...+..+++++.+|++.-.|+.-...+
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~----~~~~~~~~~------~-----~~~~~~~~~~~~d~~i~iS~sG~t~~~~~ 105 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGI----RTTVLTEGG------S-----TLTITLANLRPTDLMIGVSVWRYLRDTVA 105 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTC----CEEEECCCT------H-----HHHHHHHTCCTTEEEEEECCSSCCHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCC----CEEEecCCc------h-----hHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence 56666665566666666666666543 222222111 1 11123457788999999999998766666
Q ss_pred HHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec---CCCcHHHHHHHHHHHHHHHHHHhcC
Q 037057 159 MAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS---MVLNHQIALLVLVEQLYRSWTILKG 225 (230)
Q Consensus 159 fA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~---mTfpHqLaRLILlEQIYRA~tIl~g 225 (230)
.++...+ .|. .++-|.+-+. ..+.+.||..+.++. -.++-.++-+.++|-||.++.-.++
T Consensus 106 ~~~~ak~---~g~-~vi~IT~~~~---s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~~~~~ 168 (187)
T 3sho_A 106 ALAGAAE---RGV-PTMALTDSSV---SPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIAVREP 168 (187)
T ss_dssp HHHHHHH---TTC-CEEEEESCTT---SHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHH---CCC-CEEEEeCCCC---CcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHHHHhCc
Confidence 6665554 454 4555554332 356778998886643 3356678999999999988765543
No 25
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=70.15 E-value=26 Score=27.21 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=59.0
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec---------CCCcHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS---------MVLNHQ 206 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~---------mTfpHq 206 (230)
..+++++.+|++.-.|+.-...+.++...+ .|. .++.|-+.++ ..+.+.||..+.+.. -.+.-.
T Consensus 92 ~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~---~g~-~vi~IT~~~~---s~la~~ad~~l~~~~~~e~~~~~~~~~~S~ 164 (183)
T 2xhz_A 92 GMVTPQDVVIAISNSGESSEITALIPVLKR---LHV-PLICITGRPE---SSMARAADVHLCVKVAKEACPLGLAPTSST 164 (183)
T ss_dssp TTCCTTCEEEEECSSSCCHHHHHHHHHHHT---TTC-CEEEEESCTT---SHHHHHSSEEEECCCSCCSSTTCSSCCHHH
T ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-CEEEEECCCC---ChhHHhCCEEEEeCCCccccccCCCcchHH
Confidence 457789999999999987766666666654 453 4666655443 357788999887762 235567
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 037057 207 IALLVLVEQLYRSWTILK 224 (230)
Q Consensus 207 LaRLILlEQIYRA~tIl~ 224 (230)
.+-++++|-||.++.-.+
T Consensus 165 ~~~~~~~d~L~~~~~~~~ 182 (183)
T 2xhz_A 165 TATLVMGDALAVALLKAR 182 (183)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 889999999998876443
No 26
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=68.73 E-value=26 Score=24.15 Aligned_cols=86 Identities=7% Similarity=0.021 Sum_probs=50.4
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCC-C
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGL-D 153 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk-~ 153 (230)
+|+.+|++|.. +....+.+..++++. . +++..... ..|+...+..-++ -+|++|..-. .
T Consensus 3 mm~~~ilivdd--~~~~~~~l~~~L~~~-g---~~v~~~~~------------~~~a~~~~~~~~~--dlvi~d~~~~~~ 62 (127)
T 2gkg_A 3 HMSKKILIVES--DTALSATLRSALEGR-G---FTVDETTD------------GKGSVEQIRRDRP--DLVVLAVDLSAG 62 (127)
T ss_dssp ---CEEEEECS--CHHHHHHHHHHHHHH-T---CEEEEECC------------HHHHHHHHHHHCC--SEEEEESBCGGG
T ss_pred CCCCeEEEEeC--CHHHHHHHHHHHHhc-C---ceEEEecC------------HHHHHHHHHhcCC--CEEEEeCCCCCC
Confidence 57788999875 567778888888873 2 34333211 1233333333333 3788898876 7
Q ss_pred CChHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 154 IGSEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 154 lsS~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
.+..++.+.+.+......-.++++ +..
T Consensus 63 ~~g~~~~~~l~~~~~~~~~~ii~~-~~~ 89 (127)
T 2gkg_A 63 QNGYLICGKLKKDDDLKNVPIVII-GNP 89 (127)
T ss_dssp CBHHHHHHHHHHSTTTTTSCEEEE-ECG
T ss_pred CCHHHHHHHHhcCccccCCCEEEE-ecC
Confidence 888999999987532223345555 443
No 27
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=66.32 E-value=28 Score=27.62 Aligned_cols=85 Identities=9% Similarity=0.167 Sum_probs=60.7
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec---------CCCcHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS---------MVLNHQ 206 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~---------mTfpHq 206 (230)
..+++++.+|++.-.|+.-+..+.++...+ .|. .++-|.+-+. ..+.+.||..|.+.. ..+.-+
T Consensus 88 ~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~---~g~-~vi~IT~~~~---s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~ 160 (201)
T 3fxa_A 88 GVLQKEDILILISKGGNTGELLNLIPACKT---KGS-TLIGVTENPD---SVIAKEADIFFPVSVSKEPDPFNMLATAST 160 (201)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHTTHHHHHH---HTC-EEEEEESCTT---SHHHHHCSEEEECCCSCCCSTTSCSCHHHH
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---cCC-eEEEEECCCC---ChhHHhCCEEEEcCCCccccccCCCchHHH
Confidence 457889999999999987655555555554 453 4555554432 356777998887653 235678
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 037057 207 IALLVLVEQLYRSWTILKGQN 227 (230)
Q Consensus 207 LaRLILlEQIYRA~tIl~g~P 227 (230)
++-++++|-||-++.-.+|..
T Consensus 161 ~~~l~~~d~L~~~l~~~~g~~ 181 (201)
T 3fxa_A 161 MAVIASFDAVIVCLMTYMNYT 181 (201)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999988776653
No 28
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=64.00 E-value=9.4 Score=31.41 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=45.6
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhc-CCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCC
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLK-YYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLD 153 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~-~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ 153 (230)
+||--.+.+|..++.-....+.+|..++- .-+.++++++.+-|--..+.+...-.+.+++.+.+..-|-+|+..+.=.-
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~ 80 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNR 80 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTT
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcc
Confidence 35544457899887656555566665554 33456666554433211222111112344555666655666666664443
Q ss_pred CChHHHHHHHh
Q 037057 154 IGSEQMAELMG 164 (230)
Q Consensus 154 lsS~efA~~L~ 164 (230)
-=|-.|=+.|+
T Consensus 81 s~pg~LKn~iD 91 (190)
T 3u7r_A 81 SYPGMIKNAID 91 (190)
T ss_dssp BCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 33445555554
No 29
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=57.53 E-value=35 Score=27.31 Aligned_cols=91 Identities=11% Similarity=-0.016 Sum_probs=44.0
Q ss_pred ccEEEEEEcCCC-ChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 76 LPIRVITVGKKR-SLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 76 MkI~IiaVGK~k-~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
|||-+ ..|..+ .+.-..+.+.+.+.++.-..++++++.+.|-...+.+.....+.+.+.+.+..-|.+|+-.+.=.--
T Consensus 3 ~kili-i~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~ 81 (192)
T 3fvw_A 3 KRILF-IVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYA 81 (192)
T ss_dssp CEEEE-EESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTB
T ss_pred CEEEE-EEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccC
Confidence 35544 447765 4555677777778887545566655543321111110001122233444444446666655543333
Q ss_pred ChHHHHHHHhhhh
Q 037057 155 GSEQMAELMGDAG 167 (230)
Q Consensus 155 sS~efA~~L~~~~ 167 (230)
-+-.|-.+|+...
T Consensus 82 ~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 82 IPGPVKNLLDWLS 94 (192)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhh
Confidence 3445555665543
No 30
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=57.36 E-value=52 Score=23.85 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=50.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChH
Q 037057 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157 (230)
Q Consensus 78 I~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~ 157 (230)
++|+.|.. +....+.+..++++...+. .+.... + ..|+...++..++ -+|++|..-...+-.
T Consensus 21 ~~iLivdd--~~~~~~~l~~~L~~~~~~~--~v~~~~-------~-----~~~al~~l~~~~~--dlii~D~~l~~~~g~ 82 (150)
T 4e7p_A 21 MKVLVAED--QSMLRDAMCQLLTLQPDVE--SVLQAK-------N-----GQEAIQLLEKESV--DIAILDVEMPVKTGL 82 (150)
T ss_dssp EEEEEECS--CHHHHHHHHHHHHTSTTEE--EEEEES-------S-----HHHHHHHHTTSCC--SEEEECSSCSSSCHH
T ss_pred cEEEEEcC--CHHHHHHHHHHHHhCCCcE--EEEEEC-------C-----HHHHHHHhhccCC--CEEEEeCCCCCCcHH
Confidence 77888864 6777888888887654322 222221 1 1344444444333 389999988888999
Q ss_pred HHHHHHhhhhhcCCceEEEEEeC
Q 037057 158 QMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 158 efA~~L~~~~~~G~~~i~FiIGG 180 (230)
++.+.|.+.. ....++++.+.
T Consensus 83 ~~~~~l~~~~--~~~~ii~ls~~ 103 (150)
T 4e7p_A 83 EVLEWIRSEK--LETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHTT--CSCEEEEEESC
T ss_pred HHHHHHHHhC--CCCeEEEEeCC
Confidence 9999998742 22345444443
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.74 E-value=83 Score=26.00 Aligned_cols=126 Identities=13% Similarity=0.174 Sum_probs=65.6
Q ss_pred EEEEEcCCC--ChHHHHHHHHHHhhhcCCCCceEEEeecCCC---CCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCC
Q 037057 79 RVITVGKKR--SLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK---NTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLD 153 (230)
Q Consensus 79 ~IiaVGK~k--~~~~~~~i~eY~KRL~~y~~leiieik~~~~---~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ 153 (230)
.++..|..- ...+...+..+..+........++++....- ..+..+. .-..++.... .-++++||=...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~----~~~~~~~~~~--~~vl~iDEid~l 142 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAP----KTKEVLKRAM--GGVLFIDEAYYL 142 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHH----HHHHHHHHHT--TSEEEEETGGGS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHH----HHHHHHHhcC--CCEEEEEChhhh
Confidence 456666532 3455556666666554444445555542110 0011111 1122222222 248889987654
Q ss_pred C-------ChHHHHHHHhhhhhcCCceEEEEEeC-CCC------CCHHHHhcccceEEeecCCCcHHHHHHH
Q 037057 154 I-------GSEQMAELMGDAGSTGASRISFCIGG-PYG------HGPKMRERANISIKLSSMVLNHQIALLV 211 (230)
Q Consensus 154 l-------sS~efA~~L~~~~~~G~~~i~FiIGG-a~G------ls~~v~~rAd~~LSLS~mTfpHqLaRLI 211 (230)
. .+.+....|-+..+.+..++.||.-| +.. +++.++.|.+..+.|.+.+ +.++..++
T Consensus 143 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il 213 (309)
T 3syl_A 143 YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYS-DEELFEIA 213 (309)
T ss_dssp CCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCC-HHHHHHHH
T ss_pred ccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcC-HHHHHHHH
Confidence 2 13444445555555555555554444 322 3588999999999999998 45554443
No 32
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=56.00 E-value=17 Score=29.82 Aligned_cols=51 Identities=8% Similarity=0.148 Sum_probs=34.7
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHh-cccceEEee
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRE-RANISIKLS 199 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~-rAd~~LSLS 199 (230)
+..+++.+..|.. -+.+..-.+..++++|+|. ..|+++++++ .||..+++-
T Consensus 87 g~~i~~~~~~~~~--------~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IP 139 (182)
T 3l8u_A 87 SGKLHLITKFANK--------TYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIP 139 (182)
T ss_dssp CSEEEEECSSCSS--------BGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCC
T ss_pred CCEEEEEEcCCCc--------cccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEEC
Confidence 4567888877642 1222111112379999999 8999999996 999888763
No 33
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=51.02 E-value=38 Score=29.26 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=39.6
Q ss_pred ceEEEEEeCCCCCCHHHHhccc----ceEEeecCCCcHHHHHHH---HHHHHHHHHHHhcCCCCCC
Q 037057 172 SRISFCIGGPYGHGPKMRERAN----ISIKLSSMVLNHQIALLV---LVEQLYRSWTILKGQNYHH 230 (230)
Q Consensus 172 ~~i~FiIGGa~Gls~~v~~rAd----~~LSLS~mTfpHqLaRLI---LlEQIYRA~tIl~g~PYHk 230 (230)
.++.++||.--||+++=.+.+. ..+||++-.+==|-|-+. ++--+++.++|=.||--||
T Consensus 191 ~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als~~~~~~~~~~~~~~~~~~~ 256 (257)
T 3kw2_A 191 QDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIHTLQACYRIGEGHHHHH 256 (257)
T ss_dssp SCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSSCCCHHHHHHHHHHHHHHHHHHTCCC-------
T ss_pred CcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCCcchHHHHHHHHHHHHHHHhhccccccCccccC
Confidence 5799999999999977655432 368999998877665554 4456788888888887665
No 34
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=50.05 E-value=10 Score=31.17 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=24.4
Q ss_pred ceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 172 SRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 172 ~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
..+++|+|. ..|+++++++.||..+++
T Consensus 115 ~~~alv~G~E~~Gls~~~l~~~d~~v~I 142 (194)
T 1v2x_A 115 KPTAVLFGAEKWGVSEEALALADGAIKI 142 (194)
T ss_dssp SSEEEEECBTTTBSCHHHHHHSSEEEEC
T ss_pred CCeEEEECCCCCCCCHHHHHhCCeEEEE
Confidence 469999999 889999999999988875
No 35
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=49.91 E-value=24 Score=30.70 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=35.5
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
+..++.+|.+|.. + +.+. .-...+++|+|. ..|+++++++.||..+++
T Consensus 187 g~~i~~~~~~~~~-~-------~~~~--~~~~~~alv~G~E~~Gls~~~~~~~d~~v~I 235 (274)
T 1ipa_A 187 NLPLVATTPHAEA-L-------YWEA--NLRPPVAIAVGPEHEGLRAAWLEAAQTQVRI 235 (274)
T ss_dssp TCCEEEECTTCSS-B-------GGGS--CCCSSEEEEECCTTSCCCHHHHHHCSEEEBC
T ss_pred CCEEEEEeCCCCc-c-------hhhc--CCCCCEEEEECCCCcCCCHHHHHhCCeEEEE
Confidence 4568899988853 1 1111 113569999999 899999999999988765
No 36
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=49.43 E-value=39 Score=22.98 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=30.7
Q ss_pred CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
+++..+|+.|..|. .|...|..|.+ .|..++..+ ||-.++
T Consensus 39 ~~~~~ivv~C~~g~--rs~~aa~~L~~---~G~~~v~~l-GG~~~w 78 (85)
T 2jtq_A 39 DKNDTVKVYCNAGR--QSGQAKEILSE---MGYTHVENA-GGLKDI 78 (85)
T ss_dssp CTTSEEEEEESSSH--HHHHHHHHHHH---TTCSSEEEE-EETTTC
T ss_pred CCCCcEEEEcCCCc--hHHHHHHHHHH---cCCCCEEec-cCHHHH
Confidence 66778899998884 68888888876 477777776 986554
No 37
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=47.63 E-value=21 Score=25.58 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=34.5
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
+..++++..+|+.|..|. .|...+..|.+. |..++..+-||-.++
T Consensus 52 ~~~l~~~~~ivvyc~~g~--rs~~a~~~L~~~---G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 52 MRDNDFDTPVMVMCYHGN--SSKGAAQYLLQQ---GYDVVYSIDGGFEAW 96 (108)
T ss_dssp HHHSCTTSCEEEECSSSS--HHHHHHHHHHHH---TCSSEEEETTHHHHH
T ss_pred HHhcCCCCCEEEEcCCCc--hHHHHHHHHHHc---CCceEEEecCCHHHH
Confidence 344777888999999886 688888888764 777888888886444
No 38
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=47.63 E-value=53 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=28.1
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCC
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG 185 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls 185 (230)
-+.+|+.|.....++. +..+.|.+|-.+|. =..++||+..++
T Consensus 51 yDvIIl~d~~~~~l~~-~~~~~L~~yV~~GG--gLi~~gG~~s~~ 92 (259)
T 3rht_A 51 QDLVILSDYPAERMTA-QAIDQLVTMVKAGC--GLVMLGGWESYH 92 (259)
T ss_dssp CSEEEEESCCGGGBCH-HHHHHHHHHHHTTC--EEEEECSTTSSS
T ss_pred CCEEEEcCCccccCCH-HHHHHHHHHHHhCC--eEEEecCccccc
Confidence 3566666766666765 44556888877774 366778887664
No 39
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=47.14 E-value=95 Score=23.83 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=54.9
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecC----C-CcHH--HH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSM----V-LNHQ--IA 208 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~m----T-fpHq--La 208 (230)
..+++++.+|++.-.|+.-...+.++...+ .|. .++-+.+.+. . +.+.||..+-+..- . +.-. .+
T Consensus 78 ~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~---~g~-~vi~IT~~~~---s-l~~~ad~~l~~~~~~~~~~~~~s~~~~~ 149 (180)
T 1jeo_A 78 PSYEKDDLLILISGSGRTESVLTVAKKAKN---INN-NIIAIVCECG---N-VVEFADLTIPLEVKKSKYLPMGTTFEET 149 (180)
T ss_dssp CCCCTTCEEEEEESSSCCHHHHHHHHHHHT---TCS-CEEEEESSCC---G-GGGGCSEEEECCCCCBTTBCTTHHHHHH
T ss_pred ccCCCCCEEEEEeCCCCcHHHHHHHHHHHH---CCC-cEEEEeCCCC---h-HHHhCCEEEEeCCcccccccchhHHHHH
Confidence 456789999999999998666666665554 453 4555555443 2 67778888866531 1 1111 25
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 037057 209 LLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 209 RLILlEQIYRA~tIl~g~ 226 (230)
-++++|-||..+....|.
T Consensus 150 ~~~~ld~L~~~~~~~~~~ 167 (180)
T 1jeo_A 150 ALIFLDLVIAEIMKRLNL 167 (180)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 578999999888776654
No 40
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=47.02 E-value=14 Score=30.94 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.4
Q ss_pred ceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 172 SRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 172 ~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
..+++|+|. ..|+++++++.||..+++
T Consensus 119 ~~~alV~G~E~~GLs~~~l~~~d~~v~I 146 (211)
T 1zjr_A 119 KPTVLVVGNELQGVSPEIVEIADKKIVI 146 (211)
T ss_dssp SSEEEEEECBTTBSCHHHHTTCSEEEEC
T ss_pred CCEEEEECCcccCCCHHHHHhCCcEEEe
Confidence 469999999 899999999999988865
No 41
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.97 E-value=23 Score=26.47 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.2
Q ss_pred HHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
.+.+.++++..+|+.|..|. .|...+..|.+. |..++..+-||-.++
T Consensus 74 ~~~~~l~~~~~ivvyC~~G~--rs~~aa~~L~~~---G~~~v~~l~GG~~~W 120 (129)
T 1tq1_A 74 QVSSHFGQSDNIIVGCQSGG--RSIKATTDLLHA---GFTGVKDIVGGYSAW 120 (129)
T ss_dssp HHTTTCCTTSSEEEEESSCS--HHHHHHHHHHHH---HCCSEEEEECCHHHH
T ss_pred HHHhhCCCCCeEEEECCCCc--HHHHHHHHHHHc---CCCCeEEeCCcHHHH
Confidence 34456777788899998884 688888888764 677888888986443
No 42
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans}
Probab=46.49 E-value=37 Score=26.87 Aligned_cols=29 Identities=7% Similarity=-0.181 Sum_probs=14.2
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
+-+++++.+....+.-..+=++++|-|.|
T Consensus 92 ~~~~~~~~l~~~l~~~~~~~~~lvGhS~G 120 (292)
T 3l80_A 92 GLRDWVNAILMIFEHFKFQSYLLCVHSIG 120 (292)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEEEETTH
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEEEchh
Confidence 34555555555544322223455665555
No 43
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=45.81 E-value=27 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCH
Q 037057 139 SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~ 186 (230)
+++..+|+.|..|. .|...|..|.+ .|..++..+-||-.|..+
T Consensus 78 ~~~~~ivvyC~~G~--rS~~aa~~L~~---~G~~~v~~l~GG~~~w~~ 120 (148)
T 2fsx_A 78 QHERPVIFLCRSGN--RSIGAAEVATE---AGITPAYNVLDGFEGHLD 120 (148)
T ss_dssp ---CCEEEECSSSS--THHHHHHHHHH---TTCCSEEEETTTTTCCCC
T ss_pred CCCCEEEEEcCCCh--hHHHHHHHHHH---cCCcceEEEcCChhhhhh
Confidence 56677899998884 58888888875 477789888899866644
No 44
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=45.08 E-value=13 Score=30.27 Aligned_cols=49 Identities=4% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
+..++.++.++...+ +.+. .-..++++|+|. ..|+++++++.||..+++
T Consensus 100 g~~i~~~~~~~~~~~-------~~~~--~~~~~~alV~G~E~~Gls~~~l~~~d~~v~I 149 (184)
T 2ha8_A 100 GYTIIGVEQTAKSLD-------LTQY--CFPEKSLLLLGNEREGIPANLIQQLDVCVEI 149 (184)
T ss_dssp TCEEEEECCCTTCEE-------GGGC--CCCSSEEEEECBTTTBSCHHHHTTCSEEEEC
T ss_pred CCEEEEEECCCCCcc-------hhhc--cCCCCEEEEECCcccCCCHHHHHhCCcEEEE
Confidence 456888887643211 1111 112579999999 679999999999998876
No 45
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=44.79 E-value=10 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=33.4
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
...++++..+|+.|..|.. |...+..|.. .|..++..+-||-.+
T Consensus 46 ~~~l~~~~~ivvyc~~g~r--s~~a~~~L~~---~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 46 SSSLEKSRDIYVYGAGDEQ--TSQAVNLLRS---AGFEHVSELKGGLAA 89 (106)
T ss_dssp HHHSCTTSCEEEECSSHHH--HHHHHHHHHH---TTCSCEEECTTHHHH
T ss_pred HhcCCCCCeEEEEECCCCh--HHHHHHHHHH---cCCcCEEEecCCHHH
Confidence 3457777889999998864 8888888865 477788888888543
No 46
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=44.02 E-value=80 Score=22.05 Aligned_cols=84 Identities=8% Similarity=0.028 Sum_probs=52.3
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
|+.+|+.|.- ++...+.+..++++.. +++..... ..|+-..++.-++ -+|++|..=-.++
T Consensus 1 m~~~ILivdd--~~~~~~~l~~~l~~~g----~~v~~~~~------------~~~al~~l~~~~~--dlvllD~~~p~~~ 60 (122)
T 3gl9_A 1 MSKKVLLVDD--SAVLRKIVSFNLKKEG----YEVIEAEN------------GQIALEKLSEFTP--DLIVLXIMMPVMD 60 (122)
T ss_dssp -CCEEEEECS--CHHHHHHHHHHHHHTT----CEEEEESS------------HHHHHHHHTTBCC--SEEEECSCCSSSC
T ss_pred CCceEEEEeC--CHHHHHHHHHHHHHCC----cEEEEeCC------------HHHHHHHHHhcCC--CEEEEeccCCCCc
Confidence 5567888864 5677888888887642 34443321 1344444544433 3889999888889
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEe
Q 037057 156 SEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIG 179 (230)
..++.+.|.+......-.++++.|
T Consensus 61 g~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 61 GFTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHHHhcccccCCCEEEEec
Confidence 999999998653322234555544
No 47
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=43.29 E-value=16 Score=31.41 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=35.2
Q ss_pred CCeEEEEeCCCCC-CChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 141 DDWVVMLDENGLD-IGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 141 ~~~vIlLDe~Gk~-lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
+-.++..|.+|.. +.. ....-...+++|+|. ..|+++++++.||..+++
T Consensus 176 g~~i~~~~~~~~~~~~~---------~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~I 226 (257)
T 2i6d_A 176 GIPVYGAFLDGQSLYEA---------PLPNFTEPAILVLGSEGRGISPEVAAEITDRLTI 226 (257)
T ss_dssp TCCEEEEEEEEEETTTS---------CCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEEC
T ss_pred CCEEEEEECCCCccHHH---------hhhCcCCCEEEEECCCCCCCCHHHHHhCCeEEEE
Confidence 4568888888753 211 100112469999999 899999999999988876
No 48
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.99 E-value=88 Score=22.25 Aligned_cols=73 Identities=7% Similarity=-0.015 Sum_probs=47.2
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
++.+|+.|.. +....+++.+++++.... ..+..... ..|+...+..-++ -+|++|..-...+
T Consensus 4 ~~~~ILivdd--~~~~~~~l~~~L~~~~~~--~~v~~~~~------------~~~a~~~l~~~~~--dlii~D~~l~~~~ 65 (144)
T 3kht_A 4 RSKRVLVVED--NPDDIALIRRVLDRKDIH--CQLEFVDN------------GAKALYQVQQAKY--DLIILDIGLPIAN 65 (144)
T ss_dssp -CEEEEEECC--CHHHHHHHHHHHHHTTCC--EEEEEESS------------HHHHHHHHTTCCC--SEEEECTTCGGGC
T ss_pred CCCEEEEEeC--CHHHHHHHHHHHHhcCCC--eeEEEECC------------HHHHHHHhhcCCC--CEEEEeCCCCCCC
Confidence 4578888864 677788888888876432 22222211 1344444444333 3888999888889
Q ss_pred hHHHHHHHhhh
Q 037057 156 SEQMAELMGDA 166 (230)
Q Consensus 156 S~efA~~L~~~ 166 (230)
..++.+.|.+.
T Consensus 66 g~~~~~~lr~~ 76 (144)
T 3kht_A 66 GFEVMSAVRKP 76 (144)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 99999999873
No 49
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=42.70 E-value=1.2e+02 Score=23.63 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=53.2
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhc---ccceEEeecCCCcH-HHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER---ANISIKLSSMVLNH-QIAL 209 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~r---Ad~~LSLS~mTfpH-qLaR 209 (230)
+...+++++.+|++.-.|+.-.-.+.++...+ .|. .++-+.+-+ ...+.+. ||..|.+..-+.+. +.+-
T Consensus 103 ~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~---~g~-~vI~IT~~~---~s~la~~~~~ad~~l~~~~~~~~~~~~~~ 175 (196)
T 2yva_A 103 VRALGHAGDVLLAISTRGNSRDIVKAVEAAVT---RDM-TIVALTGYD---GGELAGLLGPQDVEIRIPSHRSARIQEMH 175 (196)
T ss_dssp HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHH---TTC-EEEEEECTT---CHHHHTTCCTTSEEEECSCSCHHHHHHHH
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-EEEEEeCCC---CchhhhcccCCCEEEEeCCCChhHHHHHH
Confidence 34567899999999999987666666665544 554 455555433 2345666 88888775433221 2367
Q ss_pred HHHHHHHHHHHHH
Q 037057 210 LVLVEQLYRSWTI 222 (230)
Q Consensus 210 LILlEQIYRA~tI 222 (230)
+++++-||-++..
T Consensus 176 l~~~~~L~~~~~~ 188 (196)
T 2yva_A 176 MLTVNCLCDLIDN 188 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888876654
No 50
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=42.04 E-value=68 Score=25.82 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=43.0
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcC-CCCce-EEEeecCCCCCCcHHHH--HHHHHHHHHhhcCCCCeEEEEeCC
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKY-YCKVE-DLQLRSNPKNTGDVKAQ--IKDEDMAVMNIISSDDWVVMLDEN 150 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~-y~~le-iieik~~~~~~~~~~~~--~~~E~e~Il~~i~~~~~vIlLDe~ 150 (230)
+|||-+|. |..++.-....+.++..++.+ -+.++ ++++.+-|--..+.+.. ...+.+.+.+.+..-+-+|+-.+.
T Consensus 4 ~mkil~I~-GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~ 82 (193)
T 3svl_A 4 KLQVVTLL-GSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPE 82 (193)
T ss_dssp CEEEEEEE-CCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECC
T ss_pred CCEEEEEE-ccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEecc
Confidence 57776554 777655555555566555432 23344 33443322111111100 023445566666555566665554
Q ss_pred CCCCChHHHHHHHhhh
Q 037057 151 GLDIGSEQMAELMGDA 166 (230)
Q Consensus 151 Gk~lsS~efA~~L~~~ 166 (230)
=.--=+-.|-.+|+..
T Consensus 83 y~~~~~~~lK~~iD~~ 98 (193)
T 3svl_A 83 YNYSVPGGLKNAIDWL 98 (193)
T ss_dssp BTTBCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3333344555555544
No 51
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=41.80 E-value=87 Score=21.84 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
|+++|+.|.. +....+.+..++.+.. .++.+..-.. ..|+...+..-++ -+|++|..=..++
T Consensus 1 m~~~ilivdd--~~~~~~~l~~~l~~~~---~~~~~~~~~~-----------~~~a~~~~~~~~~--dlvllD~~l~~~~ 62 (130)
T 1dz3_A 1 MSIKVCIADD--NRELVSLLDEYISSQP---DMEVIGTAYN-----------GQDCLQMLEEKRP--DILLLDIIMPHLD 62 (130)
T ss_dssp -CEEEEEECS--CHHHHHHHHHHHHTST---TEEEEEEESS-----------HHHHHHHHHHHCC--SEEEEESCCSSSC
T ss_pred CceEEEEEcC--CHHHHHHHHHHHHhCC---CceEEEEeCC-----------HHHHHHHHhcCCC--CEEEEecCCCCCC
Confidence 6788888864 5677788888876642 3343322111 1233333333333 3788898877789
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 156 SEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
..++.+.|.+.. .....++++.+.
T Consensus 63 g~~~~~~l~~~~-~~~~~ii~ls~~ 86 (130)
T 1dz3_A 63 GLAVLERIRAGF-EHQPNVIMLTAF 86 (130)
T ss_dssp HHHHHHHHHHHC-SSCCEEEEEEET
T ss_pred HHHHHHHHHhcC-CCCCcEEEEecC
Confidence 999999998731 122335555443
No 52
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=41.79 E-value=16 Score=32.08 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=33.6
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 144 vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
++..|.+|... +.+. .-...+++|+|. ..|+++++++.||..+++
T Consensus 207 i~~~~~~~~~~--------~~~~--~~~~~~alV~GnE~~Gls~~~~~~~d~~v~I 252 (287)
T 1x7o_A 207 LVGTDEHGDCD--------VFDF--DFTQPTLLLIGNETAGLSNAWRTLCDYTVSI 252 (287)
T ss_dssp EEEECTTCSEE--------GGGS--CTTSCEEEEECBTTTBSCHHHHHHCSEEEEC
T ss_pred EEEEECCCCcc--------Hhhc--CCCCCEEEEECCCCCCCCHHHHHhCCeEEEE
Confidence 88999887530 1111 112469999999 899999999999988865
No 53
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.15 E-value=24 Score=25.09 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=32.3
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
+..++++..+|+.|..| ..|...+..|.+ .|. ++..+-||-.
T Consensus 50 ~~~l~~~~~iv~yC~~g--~rs~~a~~~L~~---~G~-~v~~l~GG~~ 91 (103)
T 3eme_A 50 LNSFNKNEIYYIVCAGG--VRSAKVVEYLEA---NGI-DAVNVEGGMH 91 (103)
T ss_dssp GGGCCTTSEEEEECSSS--SHHHHHHHHHHT---TTC-EEEEETTHHH
T ss_pred HHhCCCCCeEEEECCCC--hHHHHHHHHHHH---CCC-CeEEeCCCHH
Confidence 34567788899999888 468888888875 477 8888888754
No 54
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=40.07 E-value=94 Score=25.14 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=44.2
Q ss_pred CccEEEEEEcCCC-ChHHHHHHHHHHhhhcCCCCce-EEEeecCCCCCCcHHH-HHHHHHHHHHhhcCCCCeEEEEeCCC
Q 037057 75 ALPIRVITVGKKR-SLGVQLVVDEYIGKLKYYCKVE-DLQLRSNPKNTGDVKA-QIKDEDMAVMNIISSDDWVVMLDENG 151 (230)
Q Consensus 75 ~MkI~IiaVGK~k-~~~~~~~i~eY~KRL~~y~~le-iieik~~~~~~~~~~~-~~~~E~e~Il~~i~~~~~vIlLDe~G 151 (230)
.|||-+|. |.++ +++-..+.+.+.+.+..-+.++ ++++.+-|--..+.+. ....+.+.+.+.+..-|.+|+-.+.=
T Consensus 6 ~mkIl~I~-GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y 84 (199)
T 4hs4_A 6 PLHFVTLL-GSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY 84 (199)
T ss_dssp CEEEEEEE-CCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB
T ss_pred CCEEEEEE-cCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc
Confidence 36765544 7765 4555566666677775434455 4445432221111110 00123445555555445666655543
Q ss_pred CCCChHHHHHHHhhh
Q 037057 152 LDIGSEQMAELMGDA 166 (230)
Q Consensus 152 k~lsS~efA~~L~~~ 166 (230)
.--=|-.|-.+|+..
T Consensus 85 ~~s~p~~LK~~iD~~ 99 (199)
T 4hs4_A 85 NYSVPGVLKNAIDWL 99 (199)
T ss_dssp TTBCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHh
Confidence 333344555555554
No 55
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.05 E-value=1.5e+02 Score=24.88 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCC-ceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGA-SRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIAL 209 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~-~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaR 209 (230)
+..++++||=-. ++.......++-..+... ..++|+---+..+.+.++.|+ ..+.|.+++- .++..
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~-~~~~~ 200 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSD-SEIST 200 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCH-HHHHH
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCH-HHHHH
Confidence 456899999776 887665554444333222 223333344677889999999 7899999884 34333
No 56
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=39.81 E-value=84 Score=25.03 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 157 EQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 157 ~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
+++++.|+++.+.+..++++..||.
T Consensus 55 ~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 55 YAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 5677777777665335899999985
No 57
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=38.85 E-value=1.1e+02 Score=22.29 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=54.6
Q ss_pred cCcCccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEE-EeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCC
Q 037057 72 CKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL-QLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDEN 150 (230)
Q Consensus 72 ~~~~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leii-eik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~ 150 (230)
.-..|+++|+.|.. +....+.+..++++. .++++ .... ..|+...+....+.--+|++|..
T Consensus 31 ~~~~~~~~Ilivdd--~~~~~~~l~~~L~~~----g~~v~~~~~~------------~~~al~~l~~~~~~~dliilD~~ 92 (157)
T 3hzh_A 31 YDTGIPFNVLIVDD--SVFTVKQLTQIFTSE----GFNIIDTAAD------------GEEAVIKYKNHYPNIDIVTLXIT 92 (157)
T ss_dssp TTTTEECEEEEECS--CHHHHHHHHHHHHHT----TCEEEEEESS------------HHHHHHHHHHHGGGCCEEEECSS
T ss_pred CCCCCceEEEEEeC--CHHHHHHHHHHHHhC----CCeEEEEECC------------HHHHHHHHHhcCCCCCEEEEecc
Confidence 33457889999865 577788888888765 34544 2211 12333344333112248999998
Q ss_pred CCCCChHHHHHHHhhhhhcCCceEEEEEe
Q 037057 151 GLDIGSEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 151 Gk~lsS~efA~~L~~~~~~G~~~i~FiIG 179 (230)
-..++..++.+.|.+.. ....++++.+
T Consensus 93 l~~~~g~~~~~~lr~~~--~~~~ii~ls~ 119 (157)
T 3hzh_A 93 MPKMDGITCLSNIMEFD--KNARVIMISA 119 (157)
T ss_dssp CSSSCHHHHHHHHHHHC--TTCCEEEEES
T ss_pred CCCccHHHHHHHHHhhC--CCCcEEEEec
Confidence 88899999999998753 2234554443
No 58
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=38.69 E-value=1.4e+02 Score=23.32 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=53.8
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhc---ccceEEeecCCCc-HHHHHH
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRER---ANISIKLSSMVLN-HQIALL 210 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~r---Ad~~LSLS~mTfp-HqLaRL 210 (230)
...+++++.+|++.-.|+.-...+.++...+ .|. .++-+.+.+ +..+.+. ||..|.+..-..+ .+.+-+
T Consensus 108 ~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~---~g~-~vI~IT~~~---~s~La~~~~~ad~~l~~~~~~~~~~~~~~l 180 (199)
T 1x92_A 108 RALGQPGDVLLAISTSGNSANVIQAIQAAHD---REM-LVVALTGRD---GGGMASLLLPEDVEIRVPSKITARIQEVHL 180 (199)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHH---TTC-EEEEEECTT---CHHHHHHCCTTCEEEECSCSCHHHHHHHHH
T ss_pred HhCCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-EEEEEECCC---CCcHHhccccCCEEEEeCCCchHHHHHHHH
Confidence 3567899999999999987666666655544 554 455554433 3567778 9988876532211 256778
Q ss_pred HHHHHHHHHHHH
Q 037057 211 VLVEQLYRSWTI 222 (230)
Q Consensus 211 ILlEQIYRA~tI 222 (230)
++++-|+.++..
T Consensus 181 ~i~~~L~~~~~~ 192 (199)
T 1x92_A 181 LAIHCLCDLIDR 192 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
No 59
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=38.48 E-value=36 Score=25.82 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=34.3
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
..++++..+|+.|..|. .|...|..|.+ .|..++..+-||-.++
T Consensus 77 ~~l~~~~~ivvyC~~G~--rS~~aa~~L~~---~G~~~v~~l~GG~~~W 120 (137)
T 1qxn_A 77 SGLDPEKPVVVFCKTAA--RAALAGKTLRE---YGFKTIYNSEGGMDKW 120 (137)
T ss_dssp HCCCTTSCEEEECCSSS--CHHHHHHHHHH---HTCSCEEEESSCHHHH
T ss_pred ccCCCCCeEEEEcCCCc--HHHHHHHHHHH---cCCcceEEEcCcHHHH
Confidence 35777888999999996 68888888875 4777888888986443
No 60
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=38.29 E-value=19 Score=28.57 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=38.0
Q ss_pred HhhcC-CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhc--ccceEEee
Q 037057 135 MNIIS-SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRER--ANISIKLS 199 (230)
Q Consensus 135 l~~i~-~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~r--Ad~~LSLS 199 (230)
++.++ .+..++.++.+|... +.+.. -..++++|+|. ..|+++++++. ||..+++-
T Consensus 71 l~~l~~~g~~i~~~~~~~~~~--------~~~~~--~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IP 129 (160)
T 3e5y_A 71 VAAEAPDPARMFAFTTRGSGR--------FHDRA--FEPGDWFVFGAETRGLAPALVDRFAPEQRVRLP 129 (160)
T ss_dssp HHHHCCCGGGEEEECSTTCEE--------GGGSC--CCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECC
T ss_pred HHHHHhCCCEEEEEecCCCcc--------ccccC--CCCCEEEEECCCcCCCCHHHHhhccCCeEEEEc
Confidence 33444 345688888877431 22221 12468999999 89999999999 99988763
No 61
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=37.96 E-value=99 Score=25.70 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=43.2
Q ss_pred HHHHhhcCCCC-eEEEEeCCC-----CCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceE
Q 037057 132 MAVMNIISSDD-WVVMLDENG-----LDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196 (230)
Q Consensus 132 e~Il~~i~~~~-~vIlLDe~G-----k~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~L 196 (230)
+.+.+.+.++. -+|+|||=+ ..++-+++-++|.+. ..+...||=|-. -++++.+.||..=
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R----p~~~~vIlTGr~-ap~~l~e~AD~VT 175 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR----PGHQTVIITGRG-CHRDILDLADTVS 175 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS----CTTCEEEEECSS-CCHHHHHHCSEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC----cCCCEEEEECCC-CcHHHHHhCccee
Confidence 44556665444 489999986 468888888888754 345677777766 5889999999653
No 62
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11
Probab=35.90 E-value=26 Score=28.55 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=6.1
Q ss_pred HHHHHHHhhcCC
Q 037057 129 DEDMAVMNIISS 140 (230)
Q Consensus 129 ~E~e~Il~~i~~ 140 (230)
+.-..+++.+.-
T Consensus 87 ~dl~~ll~~l~~ 98 (294)
T 1ehy_A 87 DDQAALLDALGI 98 (294)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344455566553
No 63
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=35.85 E-value=1.7e+02 Score=23.63 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=57.6
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecC---------CCcHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSM---------VLNHQ 206 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~m---------TfpHq 206 (230)
..+++++.+|++.-.|+.-+..+.++...+. ..|. .++-|.+-+. ..+.+.||..|.+..- .+.-.
T Consensus 102 ~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~-~~Ga-~vI~IT~~~~---s~La~~aD~~l~~~~~~e~~~~~~~~~~S~ 176 (220)
T 3etn_A 102 GILQENDLLLLISNSGKTREIVELTQLAHNL-NPGL-KFIVITGNPD---SPLASESDVCLSTGHPAEVCTLGMTPTTST 176 (220)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHHHHHHHHHH-CTTC-EEEEEESCTT---SHHHHHSSEEEECCCCCCCSTTSCSSSHHH
T ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHHHhc-CCCC-eEEEEECCCC---ChhHHhCCEEEEcCCCcccccccccchHHH
Confidence 4678899999999999865555555554431 0553 4555554332 3577789988876431 13456
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 037057 207 IALLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 207 LaRLILlEQIYRA~tIl~g~ 226 (230)
++-+++++-||-++.-.+|.
T Consensus 177 ~~~l~lld~L~~~l~~~~g~ 196 (220)
T 3etn_A 177 TVMTVIGDILVVQTMKRTEF 196 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 78899999999988776664
No 64
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=35.48 E-value=77 Score=28.30 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=27.7
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCC
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHG 185 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls 185 (230)
+..+.++||++- ..+++..+.++.....|. =.|+|| ++|++
T Consensus 38 ~~~~~~liDPdK--~~~~~~~~~~~~~~~sGt--Dai~VG-S~~vt 78 (286)
T 3vk5_A 38 QPGPVHIIDPFK--VPVTEAVEKAAELTRLGF--AAVLLA-STDYE 78 (286)
T ss_dssp CCEEEEEECTTT--SCHHHHHHHHHHHHHTTC--SCEEEE-CSCCS
T ss_pred cCCceEEECCCC--CCcHHHHHHHHHHHhcCC--CEEEEc-cCCCC
Confidence 345778888864 356676666666666664 356788 88887
No 65
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=35.39 E-value=26 Score=29.97 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
.+..++.+|.+|.. -+.+. .-...+++|+|. ..|+++++++.||..+++
T Consensus 177 ~g~~i~~~~~~~~~--------~~~~~--~~~~~~alv~G~E~~Gls~~~~~~~d~~v~I 226 (253)
T 1gz0_A 177 ENIWIVGTAGEADH--------TLYQS--KMTGRLALVMGAEGEGMRRLTREHCDELISI 226 (253)
T ss_dssp TTCEEEEECTTCSE--------EGGGS--CCCSSEEEEEEBTTTBSCHHHHHTCSEEEEC
T ss_pred CCCEEEEEECCCCc--------chhhc--cCCCCEEEEECCCCcCcCHHHHHhCCEEEEE
Confidence 35678888877652 01111 112469999999 789999999999988876
No 66
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Probab=34.15 E-value=26 Score=29.12 Aligned_cols=30 Identities=3% Similarity=0.019 Sum_probs=12.6
Q ss_pred CChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 154 IGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 154 lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
++-+++|+.+....+.=.-+=+.++|-|.|
T Consensus 76 ~~~~~~a~dl~~ll~~l~~~~~~lvGhS~G 105 (316)
T 3afi_E 76 YRFFDHVRYLDAFIEQRGVTSAYLVAQDWG 105 (316)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSEEEEEEEHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence 344555555544443211122344554444
No 67
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=33.87 E-value=1.8e+02 Score=23.26 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcc---cceEEeecCCCcH-HHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERA---NISIKLSSMVLNH-QIAL 209 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rA---d~~LSLS~mTfpH-qLaR 209 (230)
+...+.+++.+|++.-.|+.-...+.++... ..|. .++-+.|.+.+ .+.+.| |..|.+..-..|. +.+-
T Consensus 108 l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak---~~g~-~vi~iT~~~~s---~la~~a~~~d~~l~~~~~~~~~~~~~~ 180 (201)
T 3trj_A 108 VAALGNEDDILLVITTSGDSENILSAVEEAH---DLEM-KVIALTGGSGG---ALQNMYNTDDIELRVPSDNIANIQENH 180 (201)
T ss_dssp HHHHCCTTCEEEEECSSSCCHHHHHHHHHHH---HTTC-EEEEEEETTCC---GGGGTCCTTCEEEEESCCCHHHHHHHH
T ss_pred HHhhCCCCCEEEEEeCCCCCHHHHHHHHHHH---HCCC-cEEEEECCCCC---HHHHhhccCCEEEEeCCCCchHHHHHH
Confidence 3345789999999999998655555555544 4554 56666665544 466678 9888876655443 4444
Q ss_pred HHHHHHHHH
Q 037057 210 LVLVEQLYR 218 (230)
Q Consensus 210 LILlEQIYR 218 (230)
++++--||-
T Consensus 181 l~i~~~l~~ 189 (201)
T 3trj_A 181 FLIVHCLCD 189 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 68
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=33.83 E-value=27 Score=30.48 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhh-hhhcCCceEEEEEeC-CCCCCHHHHhcccceEEe
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGD-AGSTGASRISFCIGG-PYGHGPKMRERANISIKL 198 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~-~~~~G~~~i~FiIGG-a~Gls~~v~~rAd~~LSL 198 (230)
.+-.++.+|.+|.. + +.+ .. -...+++|+|. ..|+++++++.||..+++
T Consensus 191 ~g~~v~~~~~~~~~-~-------~~~~~~--~~~~~alv~GnE~~Gls~~~~~~~d~~v~I 241 (277)
T 3nk6_A 191 NDIALMVLDTDGDL-G-------VKDLGD--RADRMALVFGSEKGGPSGLFQEASAGTVSI 241 (277)
T ss_dssp TTCCEEEECTTCSE-E-------GGGGGG--CCSCCEEEEEBTTTBSCHHHHHHCSCEEEC
T ss_pred cCCeEEEEecCCCc-c-------hhhhhc--cCCCEEEEECCCCCCCCHHHHHhCCeEEEE
Confidence 34568899988842 1 122 11 13579999999 889999999999998876
No 69
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=33.55 E-value=26 Score=24.75 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=32.1
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
+..++++..+|+.|..| ..|...+..|.+ .|. ++..+-||-.
T Consensus 50 ~~~l~~~~~ivvyC~~g--~rs~~a~~~L~~---~G~-~v~~l~GG~~ 91 (100)
T 3foj_A 50 LNYFNDNETYYIICKAG--GRSAQVVQYLEQ---NGV-NAVNVEGGMD 91 (100)
T ss_dssp GGGSCTTSEEEEECSSS--HHHHHHHHHHHT---TTC-EEEEETTHHH
T ss_pred HHhCCCCCcEEEEcCCC--chHHHHHHHHHH---CCC-CEEEecccHH
Confidence 34567788899999888 458888888875 577 8888888754
No 70
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=33.18 E-value=43 Score=25.23 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=31.4
Q ss_pred hhcCCCCeEEEEeCCCCCC-----ChHHHHHHHhhhhhcCCceEEEEEeCCCCCC
Q 037057 136 NIISSDDWVVMLDENGLDI-----GSEQMAELMGDAGSTGASRISFCIGGPYGHG 185 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~l-----sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls 185 (230)
..++++..+|+.|..|... .+..++..+......|.. +..+-||-.++.
T Consensus 87 ~~~~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~ 140 (154)
T 1hzm_A 87 TRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQ 140 (154)
T ss_dssp HHSTTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHH
T ss_pred hccCCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHH
Confidence 3456677899999988765 223444455554456776 777778865543
No 71
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=32.70 E-value=1.8e+02 Score=22.78 Aligned_cols=39 Identities=5% Similarity=0.089 Sum_probs=25.9
Q ss_pred CccEEEEEEcCCC---ChHHHHHHHHHHhhhcCC---CCceEEEee
Q 037057 75 ALPIRVITVGKKR---SLGVQLVVDEYIGKLKYY---CKVEDLQLR 114 (230)
Q Consensus 75 ~MkI~IiaVGK~k---~~~~~~~i~eY~KRL~~y---~~leiieik 114 (230)
+||| ++..|..+ ++.-..+.+.+.+.++.- ..++++.+.
T Consensus 1 M~ki-lii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 1 MSKL-LVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp -CEE-EEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCeE-EEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 3566 45557777 477777777788877653 567777765
No 72
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=31.80 E-value=2.3e+02 Score=23.81 Aligned_cols=92 Identities=11% Similarity=0.007 Sum_probs=46.2
Q ss_pred cCcCccEEEEEEcCCC-ChHHHHHHHHHHhhhcC-CCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 037057 72 CKRALPIRVITVGKKR-SLGVQLVVDEYIGKLKY-YCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDE 149 (230)
Q Consensus 72 ~~~~MkI~IiaVGK~k-~~~~~~~i~eY~KRL~~-y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe 149 (230)
.-.+|||-+ ..|..+ ++.-..+.+...+.+.. -+.++++++.+.+-...+.+ ...+.+.+.+.+..-+-+|+-.+
T Consensus 31 ~~~~mkIli-I~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~--~~d~~~~l~~~i~~AD~iI~~sP 107 (247)
T 2q62_A 31 STHRPRILI-LYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPV--SHPKVQELRELSIWSEGQVWVSP 107 (247)
T ss_dssp CCSCCEEEE-EECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCT--TSHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCeEEE-EEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCC--CCHHHHHHHHHHHHCCEEEEEeC
Confidence 334577744 457766 45556666667777764 34566666543221111100 11223344444443455555554
Q ss_pred CCCCCChHHHHHHHhhh
Q 037057 150 NGLDIGSEQMAELMGDA 166 (230)
Q Consensus 150 ~Gk~lsS~efA~~L~~~ 166 (230)
.=.--=|-.|-.+|+..
T Consensus 108 ~Yn~sipa~LKn~iD~l 124 (247)
T 2q62_A 108 ERHGAMTGIMKAQIDWI 124 (247)
T ss_dssp CSSSSCCHHHHHHHHTS
T ss_pred CCCCCccHHHHHHHHHh
Confidence 43333345677777665
No 73
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis}
Probab=31.79 E-value=25 Score=27.07 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=3.3
Q ss_pred EEEeCCCC
Q 037057 176 FCIGGPYG 183 (230)
Q Consensus 176 FiIGGa~G 183 (230)
+++|-|.|
T Consensus 94 ~lvG~S~G 101 (278)
T 3oos_A 94 GFAGHSAG 101 (278)
T ss_dssp EEEEETHH
T ss_pred EEEeeccc
Confidence 34444443
No 74
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.64 E-value=1.4e+02 Score=21.08 Aligned_cols=82 Identities=6% Similarity=0.109 Sum_probs=44.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCChH
Q 037057 78 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157 (230)
Q Consensus 78 I~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS~ 157 (230)
.+|+.|.. +....+.+.+++++. .++..... ..|+...+...++ -+|++|..-...+-.
T Consensus 4 ~~iLivdd--~~~~~~~l~~~l~~~-----~~v~~~~~------------~~~a~~~~~~~~~--dlvi~D~~l~~~~g~ 62 (140)
T 3n53_A 4 KKILIIDQ--QDFSRIELKNFLDSE-----YLVIESKN------------EKEALEQIDHHHP--DLVILDMDIIGENSP 62 (140)
T ss_dssp CEEEEECS--CHHHHHHHHHHHTTT-----SEEEEESS------------HHHHHHHHHHHCC--SEEEEETTC------
T ss_pred CEEEEEeC--CHHHHHHHHHHHHhc-----ceEEEeCC------------HHHHHHHHhcCCC--CEEEEeCCCCCCcHH
Confidence 57777754 567778888887665 34333321 1334444444333 388899887777888
Q ss_pred HHHHHHhhhhhcCCceEEEEEeC
Q 037057 158 QMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 158 efA~~L~~~~~~G~~~i~FiIGG 180 (230)
++.+.|.+......-.++++.+.
T Consensus 63 ~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 63 NLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHcCcccCCCCEEEEecC
Confidence 89999987542223345555443
No 75
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.63 E-value=1.4e+02 Score=21.35 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=53.1
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhh-------cCCCCeEEEEe
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI-------ISSDDWVVMLD 148 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~-------i~~~~~vIlLD 148 (230)
|+++|+.|.. +....+.+...+++..... ++..... ..|+...++. -...--+|++|
T Consensus 3 ~~~~ILivdd--d~~~~~~l~~~L~~~g~~~--~v~~~~~------------~~~al~~l~~~~~~~~~~~~~~dliilD 66 (152)
T 3heb_A 3 LSVTIVMIED--DLGHARLIEKNIRRAGVNN--EIIAFTD------------GTSALNYLFGDDKSGRVSAGRAQLVLLD 66 (152)
T ss_dssp --CEEEEECC--CHHHHHHHHHHHHHTTCCC--CEEEESS------------HHHHHHHHHCTTSSSGGGTTCBEEEEEC
T ss_pred CCceEEEEeC--CHHHHHHHHHHHHhCCCcc--eEEEeCC------------HHHHHHHHhccccccccccCCCCEEEEe
Confidence 4678888864 6777888888888764322 3333211 1344444431 01223489999
Q ss_pred CCCCCCChHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 149 ENGLDIGSEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 149 e~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
..-..++..++.+.|.+......-.++++.+..
T Consensus 67 ~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 67 LNLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp SBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred CCCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 887788999999999874222223455555433
No 76
>3hmc_A Putative prophage lambdaba04, glycosyl hydrolase, 25; endolysin; HET: MES; 1.44A {Bacillus anthracis} SCOP: c.1.8.0 PDB: 2nw0_A
Probab=31.62 E-value=1e+02 Score=24.98 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCCCCCh--HHHHHHHhhhhhcCCceEEEEEeC
Q 037057 127 IKDEDMAVMNIISSDDWVVMLDENGLDIGS--EQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 127 ~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS--~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
-++|++..++.+++++..++||.+....+. ..+..+++.....|..++.+..+-
T Consensus 72 a~~qA~~f~~~~~~~~~p~~lD~E~~s~~~~~~~~~~f~~~v~~~g~~~~~iYt~~ 127 (192)
T 3hmc_A 72 AKKEAQDFWNRGDKSATVWVADVEVKTMNDMRAGTQAFIDELYRLGAKKVGLYVGH 127 (192)
T ss_dssp HHHHHHHHHHHSCTTCSCEEEEECSCSSSCHHHHHHHHHHHHHHHTCSCEEEEECT
T ss_pred HHHHHHHHHHhcCcccCceEEEecCCCHHHHHHHHHHHHHHHHHhcCcceEEEcCH
Confidence 357888999999888888999998764432 334455555555565567666653
No 77
>4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp}
Probab=31.54 E-value=30 Score=30.60 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCC---------CCChHHHHHHHhhhhhc-CCceEEEEEeCCCCC
Q 037057 141 DDWVVMLDENGL---------DIGSEQMAELMGDAGST-GASRISFCIGGPYGH 184 (230)
Q Consensus 141 ~~~vIlLDe~Gk---------~lsS~efA~~L~~~~~~-G~~~i~FiIGGa~Gl 184 (230)
+-.+|+.|-.|- .++.+++|+.+.+.++. |.. =++++|++.|=
T Consensus 128 ~~~vi~~dl~G~G~S~~~~~~~~~~~~~a~~~~~l~~~lg~~-~~~l~G~S~Gg 180 (388)
T 4i19_A 128 AFHLVIPSLPGFGLSGPLKSAGWELGRIAMAWSKLMASLGYE-RYIAQGGDIGA 180 (388)
T ss_dssp CEEEEEECCTTSGGGCCCSSCCCCHHHHHHHHHHHHHHTTCS-SEEEEESTHHH
T ss_pred CeEEEEEcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC-cEEEEeccHHH
Confidence 345788888772 56778888888777654 333 36788988873
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=30.71 E-value=57 Score=29.63 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=39.8
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC---------------CCCCCHHHHhcccceEEeecCCCc
Q 037057 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG---------------PYGHGPKMRERANISIKLSSMVLN 204 (230)
Q Consensus 144 vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG---------------a~Gls~~v~~rAd~~LSLS~mTfp 204 (230)
++++||-= .++.+.+... -+.++..... +|++|. ++++.+.+++|+.. +.|.+++-.
T Consensus 298 VliIDEa~-~l~~~a~~aL-lk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~ 369 (456)
T 2c9o_A 298 VLFVDEVH-MLDIECFTYL-HRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI-IRTMLYTPQ 369 (456)
T ss_dssp EEEEESGG-GCBHHHHHHH-HHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-EECCCCCHH
T ss_pred EEEEechh-hcCHHHHHHH-HHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcce-eeCCCCCHH
Confidence 78888754 5565555554 4555565556 577676 77999999999976 688887643
No 79
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.20 E-value=49 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.3
Q ss_pred cCCCCeEEEEeCCCCCCChHHHHHHHh
Q 037057 138 ISSDDWVVMLDENGLDIGSEQMAELMG 164 (230)
Q Consensus 138 i~~~~~vIlLDe~Gk~lsS~efA~~L~ 164 (230)
++.....++|+++|-.+++|++=+-|.
T Consensus 43 l~~~~~~lvLeeDGT~VddEeyF~tLp 69 (91)
T 2eel_A 43 IATGLVTLVLEEDGTVVDTEEFFQTLG 69 (91)
T ss_dssp CSSSCEEEEETTTCCBCCCHHHHTTSC
T ss_pred CCCCCcEEEEeeCCcEEechhhhhhCC
Confidence 344578999999999999999954443
No 80
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=30.16 E-value=1.9e+02 Score=25.06 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=45.5
Q ss_pred HHHHHHHhh--cCCCCeEEEEeCCC----CCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC--CHHHHhccc-ceEEee
Q 037057 129 DEDMAVMNI--ISSDDWVVMLDENG----LDIGSEQMAELMGDAGSTGASRISFCIGGPYGH--GPKMRERAN-ISIKLS 199 (230)
Q Consensus 129 ~E~e~Il~~--i~~~~~vIlLDe~G----k~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl--s~~v~~rAd-~~LSLS 199 (230)
++++.+++. ++++..+|++.+.+ |.+..+.|++.++.....|. +++| +||+.-- .+++.+... ..+.+.
T Consensus 170 ~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~-~vvl-~g~~~e~~~~~~i~~~~~~~~~~l~ 247 (349)
T 3tov_A 170 CQAQEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGY-KTVF-FGGPMDLEMVQPVVEQMETKPIVAT 247 (349)
T ss_dssp HHHHHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTC-EEEE-CCCTTTHHHHHHHHHTCSSCCEECT
T ss_pred HHHHHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCC-eEEE-EeCcchHHHHHHHHHhcccccEEee
Confidence 345555554 34455677777665 67889999998888876654 4655 6776421 123333332 245664
Q ss_pred cCCCcHHHHHH
Q 037057 200 SMVLNHQIALL 210 (230)
Q Consensus 200 ~mTfpHqLaRL 210 (230)
.-|=..|++.+
T Consensus 248 g~~sl~e~~al 258 (349)
T 3tov_A 248 GKFQLGPLAAA 258 (349)
T ss_dssp TCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 33333345444
No 81
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=29.98 E-value=63 Score=24.66 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=34.1
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
..++++..+|+.|..|....|...+..|.. .|. ++..+-||-.+
T Consensus 67 ~~l~~~~~ivvyC~~g~~~rs~~aa~~L~~---~G~-~v~~l~GG~~~ 110 (144)
T 3nhv_A 67 KRLSKEKVIITYCWGPACNGATKAAAKFAQ---LGF-RVKELIGGIEY 110 (144)
T ss_dssp TTCCTTSEEEEECSCTTCCHHHHHHHHHHH---TTC-EEEEEESHHHH
T ss_pred hhCCCCCeEEEEECCCCccHHHHHHHHHHH---CCC-eEEEeCCcHHH
Confidence 456778889999999976778888888875 577 67777788644
No 82
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=29.97 E-value=1.5e+02 Score=21.00 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=49.1
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
.++.+|+.|.. +....+.+..++++. .+++..... ..|+...+...++ -+|++|..-...
T Consensus 6 ~~~~~iLivd~--~~~~~~~l~~~L~~~----g~~v~~~~~------------~~~a~~~l~~~~~--dlii~d~~l~~~ 65 (147)
T 2zay_A 6 GKWWRIMLVDT--QLPALAASISALSQE----GFDIIQCGN------------AIEAVPVAVKTHP--HLIITEANMPKI 65 (147)
T ss_dssp --CEEEEEECT--TGGGGHHHHHHHHHH----TEEEEEESS------------HHHHHHHHHHHCC--SEEEEESCCSSS
T ss_pred CCCceEEEEeC--CHHHHHHHHHHHHHc----CCeEEEeCC------------HHHHHHHHHcCCC--CEEEEcCCCCCC
Confidence 45678888875 455667777777764 234443311 1233333433333 388889887788
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEe
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIG 179 (230)
+..++.+.|.+......-.++++.+
T Consensus 66 ~g~~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 66 SGMDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp CHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred CHHHHHHHHHcCcccCCCCEEEEeC
Confidence 9999999998732222233544444
No 83
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Probab=29.91 E-value=62 Score=24.69 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.8
Q ss_pred EEeCCCC
Q 037057 177 CIGGPYG 183 (230)
Q Consensus 177 iIGGa~G 183 (230)
++|-+.|
T Consensus 91 l~G~S~G 97 (262)
T 3r0v_A 91 VFGMSSG 97 (262)
T ss_dssp EEEETHH
T ss_pred EEEEcHH
Confidence 3344433
No 84
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}
Probab=29.89 E-value=71 Score=24.56 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=5.5
Q ss_pred HHHHHHhhcCCC
Q 037057 130 EDMAVMNIISSD 141 (230)
Q Consensus 130 E~e~Il~~i~~~ 141 (230)
.-..+++.+..+
T Consensus 76 ~~~~~l~~l~~~ 87 (264)
T 3ibt_A 76 DLLAFIDAKGIR 87 (264)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHhcCCC
Confidence 334455555433
No 85
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=29.65 E-value=2.7e+02 Score=23.90 Aligned_cols=87 Identities=22% Similarity=0.181 Sum_probs=61.4
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec--CC------CcHHH
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS--MV------LNHQI 207 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~--mT------fpHqL 207 (230)
..+.++|.+|++.-.|+.-...+.++...+ .|. .++-|.+-++ ..+-+.||..|.... -. +.-..
T Consensus 136 ~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~---~Ga-~~IaIT~~~~---S~La~~AD~~I~~~~g~E~~~~st~~~s~t 208 (306)
T 1nri_A 136 IHFSKNDVLVGIAASGRTPYVIAGLQYAKS---LGA-LTISIASNPK---SEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306)
T ss_dssp TTCCTTSEEEEECTTSCCHHHHHHHHHHHH---HTC-EEEEEESSTT---CHHHHHSSEEEECCCCSCSSTTCTTTHHHH
T ss_pred cCCCCCCEEEEEECCCCCHHHHHHHHHHHH---CCC-EEEEEECCCC---ChHHHhCCEEEEcCCCCccccCcccchhHH
Confidence 357899999999999988766666666654 453 3554444343 367788998887642 11 33456
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q 037057 208 ALLVLVEQLYRSWTILKGQNYH 229 (230)
Q Consensus 208 aRLILlEQIYRA~tIl~g~PYH 229 (230)
+-+++++-||-++.+..|.-|.
T Consensus 209 a~~~vl~~L~~~~~~~~g~~~~ 230 (306)
T 1nri_A 209 AQKMVLNMLTTASMILLGKCYE 230 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCBT
T ss_pred HHHHHHHHHHHHHHHHccHHHH
Confidence 7779999999999998887663
No 86
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Probab=29.55 E-value=49 Score=26.95 Aligned_cols=10 Identities=0% Similarity=0.488 Sum_probs=4.7
Q ss_pred HHHHHHhhcC
Q 037057 130 EDMAVMNIIS 139 (230)
Q Consensus 130 E~e~Il~~i~ 139 (230)
.-..+++.+.
T Consensus 82 dl~~ll~~l~ 91 (276)
T 2wj6_A 82 DALEILDQLG 91 (276)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 3344555554
No 87
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=29.47 E-value=57 Score=24.02 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=33.1
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
-+..++++..+|+.|..|..-.|...|..|.+. |. ++..+-||-.
T Consensus 64 ~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~---G~-~v~~l~GG~~ 108 (124)
T 3flh_A 64 RIGELDPAKTYVVYDWTGGTTLGKTALLVLLSA---GF-EAYELAGALE 108 (124)
T ss_dssp HGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHH---TC-EEEEETTHHH
T ss_pred HHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHc---CC-eEEEeCCcHH
Confidence 345678888899999999764478888888764 66 4666667753
No 88
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=29.01 E-value=47 Score=29.31 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=46.1
Q ss_pred CCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCC-CCCCHHHHhcccceEEeecCCCcHHHHHHHHH-HHHHH
Q 037057 141 DDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGP-YGHGPKMRERANISIKLSSMVLNHQIALLVLV-EQLYR 218 (230)
Q Consensus 141 ~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa-~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILl-EQIYR 218 (230)
.++.|.-.++|+..+ .+|.+. .+.. .+.+++.++.||+ -|+.+. .-| +--=|.|+|=.|-|=. |-++=
T Consensus 183 yd~~I~TS~~G~~~~-~~l~~~-~~~~-~~~~~~liVFG~~~~Gl~~~---~fd----~~~Nt~P~QGsrtIRtEEAv~i 252 (268)
T 1k3r_A 183 ADVVVATSRNASPIT-SILDEV-KTRM-RGAREAAILFGGPYKGLPEI---DAD----IWVNTLPGQCTETVRTEEAVLA 252 (268)
T ss_dssp CSEEEEECTTSCBTT-TSHHHH-HHHH-TTCSEEEEECCCSSSCCCSC---CCS----EEEBSSTTCSSSCCCHHHHHHH
T ss_pred CCeEEEECCCCCCch-hccchh-hhcc-cCCCeEEEEECCccccchhh---hcC----eeEeccCCCCCccccHHHHHHH
Confidence 467899999999988 555543 2211 2346899999999 999854 122 2224778887443322 34455
Q ss_pred HHHHhc
Q 037057 219 SWTILK 224 (230)
Q Consensus 219 A~tIl~ 224 (230)
++++++
T Consensus 253 tLa~L~ 258 (268)
T 1k3r_A 253 TLSVFN 258 (268)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555443
No 89
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=28.61 E-value=43 Score=27.26 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCC----------hHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 144 VVMLDENGLDIG----------SEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 144 vIlLDe~Gk~ls----------S~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
+|++|.+|-.++ |++..+.|+++...| .++++-|=+
T Consensus 3 li~~DlDGTLl~~~~~~~~~~i~~~~~~al~~l~~~g--~v~iaTGR~ 48 (239)
T 1u02_A 3 LIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERF--DTYIVTGRS 48 (239)
T ss_dssp EEEEECBTTTBCCCSCGGGCCCCHHHHHHHHHHHHHS--EEEEECSSC
T ss_pred EEEEecCCCCcCCCCCcccCCCCHHHHHHHHHHhcCC--CEEEEeCCC
Confidence 455566665554 345555555555554 455555544
No 90
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A
Probab=28.01 E-value=49 Score=26.08 Aligned_cols=7 Identities=0% Similarity=0.330 Sum_probs=2.9
Q ss_pred HHHhhcC
Q 037057 133 AVMNIIS 139 (230)
Q Consensus 133 ~Il~~i~ 139 (230)
.+++.+.
T Consensus 73 ~~l~~l~ 79 (255)
T 3bf7_A 73 DTLDALQ 79 (255)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 3444443
No 91
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=27.94 E-value=74 Score=27.20 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=18.9
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCH
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~ 186 (230)
.++.++|++-. .+. +..+.+ ...|. =.++|||+.|++.
T Consensus 8 ~h~~~iDPdk~-~~~-~~~~~~---~~~Gt--D~i~vGGs~gvt~ 45 (228)
T 3vzx_A 8 KHVFKLDPNKD-LPD-EQLEIL---CESGT--DAVIIGGSDGVTE 45 (228)
T ss_dssp CEEEEECTTSC-CCT-THHHHH---HTSSC--SEEEECCCSCCCH
T ss_pred eEEEeECCCCC-CCH-HHHHHH---HHcCC--CEEEECCcCCCCH
Confidence 45667777542 232 233333 23332 2456677777764
No 92
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=27.83 E-value=2.1e+02 Score=21.97 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=26.0
Q ss_pred CccEEEEEEcCCC--ChHHHHHHHHHHhhhcCC---CCceEEEeec
Q 037057 75 ALPIRVITVGKKR--SLGVQLVVDEYIGKLKYY---CKVEDLQLRS 115 (230)
Q Consensus 75 ~MkI~IiaVGK~k--~~~~~~~i~eY~KRL~~y---~~leiieik~ 115 (230)
+||| ++..|..+ .+.-..+.+.+.+.++.- ..++++++.+
T Consensus 1 Mmki-lii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~ 45 (201)
T 1t5b_A 1 MSKV-LVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAA 45 (201)
T ss_dssp CCEE-EEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTT
T ss_pred CCeE-EEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 3666 44557776 367777777777777653 5677777653
No 93
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans}
Probab=27.57 E-value=39 Score=26.94 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=5.9
Q ss_pred HHHHHHHhhcCC
Q 037057 129 DEDMAVMNIISS 140 (230)
Q Consensus 129 ~E~e~Il~~i~~ 140 (230)
+.-..+++.+.-
T Consensus 80 ~dl~~~l~~l~~ 91 (266)
T 2xua_A 80 GDVLGLMDTLKI 91 (266)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 344455555553
No 94
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=27.35 E-value=1.7e+02 Score=20.89 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=40.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhh-cCCCCeEEEEeCCCCCCC
Q 037057 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI-ISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 77 kI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~-i~~~~~vIlLDe~Gk~ls 155 (230)
+++|+.|.. +....+.+...+++...|..+ .... + ..|+...+.. .++ -+|++|..-...+
T Consensus 3 ~~~iLivdd--~~~~~~~l~~~L~~~~g~~~v--~~~~-------~-----~~~a~~~l~~~~~~--dlvi~d~~l~~~~ 64 (154)
T 2qsj_A 3 LTVVLIVDD--HHLIRAGAKNLLEGAFSGMRV--EGAE-------T-----VSDALAFLEADNTV--DLILLDVNLPDAE 64 (154)
T ss_dssp CEEEEEECS--CHHHHHHHHHHHHHHCTTEEE--EEES-------S-----HHHHHHHHHTTCCC--SEEEECC------
T ss_pred ccEEEEEcC--CHHHHHHHHHHHHhCCCceEE--EEec-------C-----HHHHHHHHhccCCC--CEEEEeCCCCCCc
Confidence 367888864 677788888888877444222 2221 1 1344444444 332 3788888776778
Q ss_pred hHHHHHHHhhh
Q 037057 156 SEQMAELMGDA 166 (230)
Q Consensus 156 S~efA~~L~~~ 166 (230)
..++.+.|.+.
T Consensus 65 g~~~~~~l~~~ 75 (154)
T 2qsj_A 65 AIDGLVRLKRF 75 (154)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 88999999875
No 95
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=27.07 E-value=2e+02 Score=27.38 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=59.1
Q ss_pred EEcCCCChHHHHHHHHHHh----hhcCC-CCceEEEeecCCCC--CCcHHHHHHHHHHHHHhhcCCC-CeEEEEeCC-CC
Q 037057 82 TVGKKRSLGVQLVVDEYIG----KLKYY-CKVEDLQLRSNPKN--TGDVKAQIKDEDMAVMNIISSD-DWVVMLDEN-GL 152 (230)
Q Consensus 82 aVGK~k~~~~~~~i~eY~K----RL~~y-~~leiieik~~~~~--~~~~~~~~~~E~e~Il~~i~~~-~~vIlLDe~-Gk 152 (230)
+.|-. +..+..+++.|.. ++.+. +++.++-++-..+. ..+.+......++.|.+.|.+. .+-|.+|.+ +.
T Consensus 270 ~~G~~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~ 348 (518)
T 3ial_A 270 CAGIS-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSK 348 (518)
T ss_dssp EEEEE-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTS
T ss_pred ccchH-HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCC
Confidence 34443 7899999999976 44432 45565555422211 1111123445677777777655 577888987 43
Q ss_pred CCChHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 153 DIGSEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 153 ~lsS~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
.+..++.+|...|.. +.++||.
T Consensus 349 -----s~G~K~~~ael~GvP-~~i~vG~ 370 (518)
T 3ial_A 349 -----SMGDKLYYYELKGVP-LRIEVGQ 370 (518)
T ss_dssp -----CHHHHHHHHHHTTCS-EEEEEEH
T ss_pred -----CHHHHHHHHHHcCCC-EEEEECc
Confidence 477899999999874 9999994
No 96
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=26.91 E-value=57 Score=23.43 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=33.6
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCC
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGH 184 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gl 184 (230)
-+..++++.-+|+.|..|. .|...|..|.+ .|. ++..+-||-.++
T Consensus 48 ~~~~l~~~~~ivvyC~~G~--rs~~aa~~L~~---~G~-~v~~l~GG~~~W 92 (108)
T 3gk5_A 48 KWKILERDKKYAVICAHGN--RSAAAVEFLSQ---LGL-NIVDVEGGIQSW 92 (108)
T ss_dssp HGGGSCTTSCEEEECSSSH--HHHHHHHHHHT---TTC-CEEEETTHHHHH
T ss_pred HHHhCCCCCeEEEEcCCCc--HHHHHHHHHHH---cCC-CEEEEcCcHHHH
Confidence 3456777888999998884 47888888865 577 888888886443
No 97
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.77 E-value=27 Score=26.75 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=33.2
Q ss_pred HhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 135 MNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 135 l~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
...++++..+|+.|..|. .|...|..|.. .|..++..+-||-.+
T Consensus 50 ~~~l~~~~~ivvyC~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 50 SSSLEKSRDIYVYGAGDE--QTSQAVNLLRS---AGFEHVSELKGGLAA 93 (141)
T ss_dssp HTTSCTTSEEEEECSSHH--HHHHHHHHHHH---TTCCSEEECTTHHHH
T ss_pred HhcCCCCCeEEEEECCCh--HHHHHHHHHHH---cCCCCEEEecCHHHH
Confidence 356778888999999884 57788888765 477788888887643
No 98
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=26.40 E-value=1.1e+02 Score=25.89 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=38.0
Q ss_pred eEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC--------------CCCCCHHHHhcccceEEeecCCC
Q 037057 143 WVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG--------------PYGHGPKMRERANISIKLSSMVL 203 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG--------------a~Gls~~v~~rAd~~LSLS~mTf 203 (230)
.++++||=.. ++.+.+. .|.+..+.....+ +++|. ++.+++.++.|+.. +.|.+++.
T Consensus 191 ~vl~IDEi~~-l~~~~~~-~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~ 261 (368)
T 3uk6_A 191 GVLFIDEVHM-LDIESFS-FLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSE 261 (368)
T ss_dssp CEEEEESGGG-SBHHHHH-HHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCH
T ss_pred ceEEEhhccc-cChHHHH-HHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCH
Confidence 4889998764 4555555 4555555554444 44444 56788999999976 78888854
No 99
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=26.25 E-value=2.6e+02 Score=22.64 Aligned_cols=39 Identities=5% Similarity=-0.102 Sum_probs=23.3
Q ss_pred CccEEEEEEcCCC-ChHHHHHHHHHHhhhcC--CCCceEEEee
Q 037057 75 ALPIRVITVGKKR-SLGVQLVVDEYIGKLKY--YCKVEDLQLR 114 (230)
Q Consensus 75 ~MkI~IiaVGK~k-~~~~~~~i~eY~KRL~~--y~~leiieik 114 (230)
+|||-|| .|..+ ++.-..+.+...+.+.. -++++++.+.
T Consensus 1 MmkIliI-~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 1 MNKIFIY-AGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CCEEEEE-ECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CCeEEEE-ECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4676554 57665 35666666777777754 2456665554
No 100
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=26.00 E-value=1.5e+02 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCCHHHHhcccceEEeecCCCcHHHHHHH
Q 037057 183 GHGPKMRERANISIKLSSMVLNHQIALLV 211 (230)
Q Consensus 183 Gls~~v~~rAd~~LSLS~mTfpHqLaRLI 211 (230)
++.+++..|.+..+.|.+++- -++..++
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~-~~l~~i~ 282 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISL-EAMVDIL 282 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCH-HHHHHHH
T ss_pred CCChHHhcCCCceeeccCCCH-HHHHHHH
Confidence 578899999988999999986 4565555
No 101
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A
Probab=25.82 E-value=54 Score=26.50 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.6
Q ss_pred HHHHHhhcCC
Q 037057 131 DMAVMNIISS 140 (230)
Q Consensus 131 ~e~Il~~i~~ 140 (230)
-..+++.+.-
T Consensus 85 l~~~l~~l~~ 94 (282)
T 1iup_A 85 IIGIMDALEI 94 (282)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 3444555543
No 102
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=25.73 E-value=1.9e+02 Score=22.26 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=49.5
Q ss_pred ccEEEEEEcCCC-ChHHHHHHHHHHhhhcCC-------CCceEEEeec--CCCCCCc----------HHHHHHHHHHHHH
Q 037057 76 LPIRVITVGKKR-SLGVQLVVDEYIGKLKYY-------CKVEDLQLRS--NPKNTGD----------VKAQIKDEDMAVM 135 (230)
Q Consensus 76 MkI~IiaVGK~k-~~~~~~~i~eY~KRL~~y-------~~leiieik~--~~~~~~~----------~~~~~~~E~e~Il 135 (230)
|||-||. |..+ ++.-..+.+.+.+.+..- ..++++++.+ .+.-... .......+.+.+.
T Consensus 1 Mkilii~-gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (191)
T 1t0i_A 1 MKVGIIM-GSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWS 79 (191)
T ss_dssp CEEEEEE-CCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHH
T ss_pred CeEEEEe-CCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHH
Confidence 6665544 6654 455556666666666643 4566666542 1110000 0000011223344
Q ss_pred hhcCCCCeEEEEe-CCCCCCChHHHHHHHhhhh--hcCCceEEEEEeCCCC
Q 037057 136 NIISSDDWVVMLD-ENGLDIGSEQMAELMGDAG--STGASRISFCIGGPYG 183 (230)
Q Consensus 136 ~~i~~~~~vIlLD-e~Gk~lsS~efA~~L~~~~--~~G~~~i~FiIGGa~G 183 (230)
+.+..-+.+|+-. .-.-.+ +..+-.+|++.. -.|+.-.+|..||..|
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~-p~~lK~~iD~~~~~l~gK~~~~~~~G~~~~ 129 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGY-PAALKNAIDRLYHEWHGKPALVVSYGGHGG 129 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBC-CHHHHHHHHTCSTTTTTCEEEEEEEETTTT
T ss_pred HHHHhCCEEEEEeceECCCC-CHHHHHHHHHHHhhcCCCEEEEEEeCCcch
Confidence 4444334444444 444444 446777787653 2354434444466544
No 103
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=25.66 E-value=83 Score=25.46 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 132 MAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 132 e~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
+..+..++.+..+|+.|..|. ..|...+..|. . |..++..+-||
T Consensus 52 ~~~~~~l~~~~~ivvyc~~g~-~~s~~a~~~L~-~---G~~~v~~l~GG 95 (230)
T 2eg4_A 52 TELFQTLGLRSPVVLYDEGLT-SRLCRTAFFLG-L---GGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHTTCCSSEEEECSSSC-HHHHHHHHHHH-H---TTCCEEEECSS
T ss_pred HHHHHhcCCCCEEEEEcCCCC-ccHHHHHHHHH-c---CCceEEEeCCC
Confidence 445555665778899998886 56777777776 3 67789888898
No 104
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.65 E-value=1.6e+02 Score=24.63 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=37.6
Q ss_pred CeEEEEeCCCCCCChHHHHHHHhhhhhcCCc--eEEEEEeCCCCCCHHHHhcccceEEeecCCCcH
Q 037057 142 DWVVMLDENGLDIGSEQMAELMGDAGSTGAS--RISFCIGGPYGHGPKMRERANISIKLSSMVLNH 205 (230)
Q Consensus 142 ~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~--~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpH 205 (230)
..+|++|| -..++.......+. ..+.... .++++.+-+..+.+.++.|+. .+.|.+++-..
T Consensus 134 ~~vliiDE-~~~l~~~~~~~Ll~-~le~~~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~ 196 (353)
T 1sxj_D 134 YKIIILDE-ADSMTADAQSALRR-TMETYSGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASN 196 (353)
T ss_dssp CEEEEETT-GGGSCHHHHHHHHH-HHHHTTTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHH
T ss_pred ceEEEEEC-CCccCHHHHHHHHH-HHHhcCCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHH
Confidence 45889998 44556554444333 3333322 344444446678899999986 78888877543
No 105
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=25.60 E-value=1.1e+02 Score=24.66 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCCChHHH----HHHHhhhhhcCCceEEEEEeCC
Q 037057 143 WVVMLDENGLDIGSEQM----AELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS~ef----A~~L~~~~~~G~~~i~FiIGGa 181 (230)
.+|++|.+|-.++|.+. .+.|+++...|. .++|+-|.+
T Consensus 7 kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi-~v~laTgrs 48 (266)
T 3pdw_A 7 KGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGV-PYLFVTNNS 48 (266)
T ss_dssp SEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTC-CEEEEESCC
T ss_pred CEEEEeCcCceEeCCEeCccHHHHHHHHHHCCC-eEEEEeCCC
Confidence 47999999999997554 356777777885 588888744
No 106
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus}
Probab=25.55 E-value=1.1e+02 Score=24.68 Aligned_cols=11 Identities=0% Similarity=0.235 Sum_probs=5.3
Q ss_pred HHHHHHhhcCC
Q 037057 130 EDMAVMNIISS 140 (230)
Q Consensus 130 E~e~Il~~i~~ 140 (230)
.-..+++.+.-
T Consensus 84 dl~~ll~~l~~ 94 (286)
T 2yys_A 84 DTLLLAEALGV 94 (286)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhCC
Confidence 33445555543
No 107
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=24.89 E-value=2.3e+02 Score=21.55 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=54.0
Q ss_pred cCccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEE-EeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCC
Q 037057 74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDL-QLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGL 152 (230)
Q Consensus 74 ~~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leii-eik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk 152 (230)
..|+.+|+.|.- ++...+.+..++.+. .++++ .... ..|+...+...++ -+|++|..--
T Consensus 10 ~~m~~~iLivdd--~~~~~~~l~~~L~~~----g~~v~~~~~~------------~~~al~~~~~~~~--dlvi~D~~~p 69 (205)
T 1s8n_A 10 AAVPRRVLIAED--EALIRMDLAEMLREE----GYEIVGEAGD------------GQEAVELAELHKP--DLVIMDVKMP 69 (205)
T ss_dssp -CCCCEEEEECS--SHHHHHHHHHHHHHT----TCEEEEEESS------------HHHHHHHHHHHCC--SEEEEESSCS
T ss_pred cCCCccEEEEEC--CHHHHHHHHHHHHHC----CCEEEEEeCC------------HHHHHHHHhhcCC--CEEEEeCCCC
Confidence 457788999864 677788888888763 34444 2211 1233333433333 3788998877
Q ss_pred CCChHHHHHHHhhhhhcCCceEEEEEeCC
Q 037057 153 DIGSEQMAELMGDAGSTGASRISFCIGGP 181 (230)
Q Consensus 153 ~lsS~efA~~L~~~~~~G~~~i~FiIGGa 181 (230)
.++..++.+.|.+.. . ..++++.|..
T Consensus 70 ~~~g~~~~~~l~~~~--~-~pii~lt~~~ 95 (205)
T 1s8n_A 70 RRDGIDAASEIASKR--I-APIVVLTAFS 95 (205)
T ss_dssp SSCHHHHHHHHHHTT--C-SCEEEEEEGG
T ss_pred CCChHHHHHHHHhcC--C-CCEEEEecCC
Confidence 889999999998642 2 2566666644
No 108
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=24.50 E-value=44 Score=25.51 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=3.9
Q ss_pred EEEEeCCCC
Q 037057 175 SFCIGGPYG 183 (230)
Q Consensus 175 ~FiIGGa~G 183 (230)
+.++|-+.|
T Consensus 97 ~~l~G~S~G 105 (286)
T 3qit_A 97 LLLVGHSMG 105 (286)
T ss_dssp EEEEEETHH
T ss_pred EEEEEeCHH
Confidence 344444444
No 109
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=24.40 E-value=85 Score=24.82 Aligned_cols=107 Identities=7% Similarity=0.066 Sum_probs=50.4
Q ss_pred CccEEEEEEcCCC-ChHHHHHHHHHHhh-hcC-CCCceEEEeecCCCCCCcHHH--HHHHHHHHHHhhcCCCCeEEE-Ee
Q 037057 75 ALPIRVITVGKKR-SLGVQLVVDEYIGK-LKY-YCKVEDLQLRSNPKNTGDVKA--QIKDEDMAVMNIISSDDWVVM-LD 148 (230)
Q Consensus 75 ~MkI~IiaVGK~k-~~~~~~~i~eY~KR-L~~-y~~leiieik~~~~~~~~~~~--~~~~E~e~Il~~i~~~~~vIl-LD 148 (230)
+|||-| ..|..+ .+.-+.+.+...+. +.. -..++++++.+.+. .+... ....+.+.+.+.+..-+.+|+ -=
T Consensus 2 Mmkili-i~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~--~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP 78 (197)
T 2vzf_A 2 TYSIVA-ISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDP--KALLRGDLSNAKLKEAVDATCNADGLIVATP 78 (197)
T ss_dssp CEEEEE-EECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCH--HHHHHTCTTSHHHHHHHHHHHHCSEEEEEEE
T ss_pred CceEEE-EECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCc--hhhcccccCcHHHHHHHHHHHHCCEEEEEeC
Confidence 356644 457765 44444445545555 543 24566666643220 00000 000122333333433344444 44
Q ss_pred CCCCCCChHHHHHHHhhhh---hcCCceEEEEEeCCCCCC
Q 037057 149 ENGLDIGSEQMAELMGDAG---STGASRISFCIGGPYGHG 185 (230)
Q Consensus 149 e~Gk~lsS~efA~~L~~~~---~~G~~~i~FiIGGa~Gls 185 (230)
+-.-.+ +..+-.+|+... ..|+.-.+|..||..|..
T Consensus 79 ~y~~~~-p~~lK~~ld~l~~~~~~gK~~~~~~tgg~~~~~ 117 (197)
T 2vzf_A 79 IYKASY-TGLLKAFLDILPQFALAGKAALPLATGGSPAHV 117 (197)
T ss_dssp CBTTBC-CHHHHHHHTTSCTTTTTTCEEEEEEEESSGGGG
T ss_pred ccCCCC-CHHHHHHHHhccccccCCCEEEEEEECCCcchh
Confidence 444444 445777776542 235555667778877754
No 110
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.38 E-value=1.8e+02 Score=20.07 Aligned_cols=83 Identities=11% Similarity=0.062 Sum_probs=49.3
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
|+.+|+.|.. +....+.+..+++ . ..++..... ..|+...+...++ -+|++|..-...+
T Consensus 3 ~~~~ilivdd--~~~~~~~l~~~l~--~---~~~v~~~~~------------~~~a~~~l~~~~~--dlvi~d~~l~~~~ 61 (133)
T 3nhm_A 3 LKPKVLIVEN--SWTMRETLRLLLS--G---EFDCTTAAD------------GASGLQQALAHPP--DVLISDVNMDGMD 61 (133)
T ss_dssp --CEEEEECS--CHHHHHHHHHHHT--T---TSEEEEESS------------HHHHHHHHHHSCC--SEEEECSSCSSSC
T ss_pred CCCEEEEEcC--CHHHHHHHHHHHh--C---CcEEEEECC------------HHHHHHHHhcCCC--CEEEEeCCCCCCC
Confidence 4568888864 5667777777765 2 234433321 1344444444443 3889999888899
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEe
Q 037057 156 SEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIG 179 (230)
..++.+.|.+......-.++++.+
T Consensus 62 g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 62 GYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHHHhCCccCCCCEEEEeC
Confidence 999999998753222233555544
No 111
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.27 E-value=1.7e+02 Score=19.88 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=47.9
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIG 155 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~ls 155 (230)
|..+|+.|.. +....+.+..++.+. .+++..... ..|+...+...+ --+|++|..-...+
T Consensus 1 m~~~ilivdd--~~~~~~~l~~~l~~~----g~~v~~~~~------------~~~a~~~~~~~~--~dlvi~D~~l~~~~ 60 (127)
T 2jba_A 1 MARRILVVED--EAPIREMVCFVLEQN----GFQPVEAED------------YDSAVNQLNEPW--PDLILLAWMLPGGS 60 (127)
T ss_dssp -CCEEEEECS--CHHHHHHHHHHHHHT----TCEEEEECS------------HHHHHTTCSSSC--CSEEEEESEETTEE
T ss_pred CCcEEEEEcC--CHHHHHHHHHHHHHC----CceEEEeCC------------HHHHHHHHhccC--CCEEEEecCCCCCC
Confidence 5567888864 566778888887763 234433321 122322222222 23788898766678
Q ss_pred hHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 156 SEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 156 S~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
..++.+.|.+......-.++++.+.
T Consensus 61 g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (127)
T 2jba_A 61 GIQFIKHLRRESMTRDIPVVMLTAR 85 (127)
T ss_dssp HHHHHHHHHTSTTTTTSCEEEEEET
T ss_pred HHHHHHHHHhCcccCCCCEEEEeCC
Confidence 8899999986532223345555543
No 112
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.12 E-value=1.7e+02 Score=19.89 Aligned_cols=83 Identities=12% Similarity=0.170 Sum_probs=48.9
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
+|+.+|+.|.. +....+.+...+++. .+++..... . .|+...+...++ -+|++|..=..+
T Consensus 1 mm~~~ilivdd--~~~~~~~l~~~l~~~----~~~v~~~~~-------~-----~~a~~~~~~~~~--dlvl~D~~l~~~ 60 (124)
T 1srr_A 1 MMNEKILIVDD--QSGIRILLNEVFNKE----GYQTFQAAN-------G-----LQALDIVTKERP--DLVLLDMKIPGM 60 (124)
T ss_dssp --CCEEEEECS--CHHHHHHHHHHHHTT----TCEEEEESS-------H-----HHHHHHHHHHCC--SEEEEESCCTTC
T ss_pred CCCceEEEEeC--CHHHHHHHHHHHHHC----CcEEEEeCC-------H-----HHHHHHHhccCC--CEEEEecCCCCC
Confidence 36678888874 667778888887753 234333211 1 233333333333 388889887778
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEe
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIG 179 (230)
+..++.+.|.+.. ....++++.|
T Consensus 61 ~g~~~~~~l~~~~--~~~~ii~~s~ 83 (124)
T 1srr_A 61 DGIEILKRMKVID--ENIRVIIMTA 83 (124)
T ss_dssp CHHHHHHHHHHHC--TTCEEEEEES
T ss_pred CHHHHHHHHHHhC--CCCCEEEEEc
Confidence 8999999998652 2234555444
No 113
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A
Probab=23.95 E-value=47 Score=26.13 Aligned_cols=8 Identities=13% Similarity=0.044 Sum_probs=3.4
Q ss_pred HHHHhhcC
Q 037057 132 MAVMNIIS 139 (230)
Q Consensus 132 e~Il~~i~ 139 (230)
..+++.+.
T Consensus 87 ~~~l~~l~ 94 (301)
T 3kda_A 87 HKLARQFS 94 (301)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHcC
Confidence 34444443
No 114
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=23.94 E-value=2.2e+02 Score=20.91 Aligned_cols=52 Identities=8% Similarity=-0.011 Sum_probs=36.1
Q ss_pred eEEEEeCCCCCCCh---------------HHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccce
Q 037057 143 WVVMLDENGLDIGS---------------EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANIS 195 (230)
Q Consensus 143 ~vIlLDe~Gk~lsS---------------~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~ 195 (230)
.+|++|.+|-.+++ ++-.+.|+.+...|. .++++-|++...-..+.++....
T Consensus 10 k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~-~~~i~T~~~~~~~~~~l~~~gl~ 76 (162)
T 2p9j_A 10 KLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGI-TLAVISGRDSAPLITRLKELGVE 76 (162)
T ss_dssp CEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTC-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred eEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCC-EEEEEeCCCcHHHHHHHHHcCCH
Confidence 37899999988863 233466777766775 68888888876666666655443
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=23.80 E-value=2e+02 Score=23.51 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=40.3
Q ss_pred CCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEE--eCCCCCCHHHHhcccceEEeecCCCcHHHHHH
Q 037057 140 SDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCI--GGPYGHGPKMRERANISIKLSSMVLNHQIALL 210 (230)
Q Consensus 140 ~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiI--GGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRL 210 (230)
.+..+|++|+-. .++.......+ +..+....++.|++ ..+..+.+.++.|+. .+.|.+++ +.++..+
T Consensus 109 ~~~~vliiDe~~-~l~~~~~~~L~-~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~-~~~~~~~ 177 (327)
T 1iqp_A 109 ASFKIIFLDEAD-ALTQDAQQALR-RTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLR-DEDIAKR 177 (327)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHH-HHHHHTTTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCC-HHHHHHH
T ss_pred CCCeEEEEeCCC-cCCHHHHHHHH-HHHHhcCCCCeEEEEeCCccccCHHHHhhCc-EEEecCCC-HHHHHHH
Confidence 345688999854 44554444333 33333333344433 345668889999987 78898887 5555543
No 116
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti}
Probab=23.64 E-value=77 Score=25.39 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=11.9
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeCCCC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGGPYG 183 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGGa~G 183 (230)
+-+++++.+....+.-..+=++++|-|.|
T Consensus 116 ~~~~~~~dl~~~l~~l~~~~v~lvG~S~G 144 (314)
T 3kxp_A 116 EANDYADDIAGLIRTLARGHAILVGHSLG 144 (314)
T ss_dssp SHHHHHHHHHHHHHHHTSSCEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 33444444444332211123445555555
No 117
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=23.64 E-value=1e+02 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=28.5
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 144 VVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 144 vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
+|++|...-.++..++.+.|.+... ...+.++++++.
T Consensus 28 lvl~D~~~p~~~g~~~~~~l~~~~~--~~~i~vi~~~~~ 64 (237)
T 3cwo_X 28 IVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQ 64 (237)
T ss_dssp CEEEECCSTTSSHHHHHHHHHHHSS--SCCEEEECCSST
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCC--CCCEEEEECCCC
Confidence 8899999888899999999887532 245777777665
No 118
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=23.58 E-value=2.7e+02 Score=21.91 Aligned_cols=84 Identities=12% Similarity=0.229 Sum_probs=57.0
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCC-cH---------
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL-NH--------- 205 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTf-pH--------- 205 (230)
..+++++.+|++.-.|+.-+..+.++...+ .|. .++.|.+-+. ..+.+.||..|.+..-.- +.
T Consensus 85 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~---~g~-~vI~IT~~~~---s~La~~ad~~l~~~~~~~~~~~~~~~~~~~ 157 (200)
T 1vim_A 85 PRITDQDVLVGISGSGETTSVVNISKKAKD---IGS-KLVAVTGKRD---SSLAKMADVVMVVKGKMKQERDEILSQLAP 157 (200)
T ss_dssp CCCCTTCEEEEECSSSCCHHHHHHHHHHHH---HTC-EEEEEESCTT---SHHHHHCSEEEECCSSCTTCCHHHHHHHSG
T ss_pred cCCCCCCEEEEEeCCCCcHHHHHHHHHHHH---CCC-eEEEEECCCC---ChHHHhCCEEEEECCcccccCCcccccccc
Confidence 346789999999999998777777777665 443 4555554432 357788998887653221 11
Q ss_pred -----HHHHHHHHHHHHHHHHHhcCC
Q 037057 206 -----QIALLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 206 -----qLaRLILlEQIYRA~tIl~g~ 226 (230)
+.+-++++|-||-++.-..|.
T Consensus 158 ~~s~~~~~~~~lld~L~~~~~~~~~~ 183 (200)
T 1vim_A 158 LGTMFELTAMIFLDALVAEIMMQKHL 183 (200)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 124478999999888766553
No 119
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Probab=23.57 E-value=40 Score=26.35 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=6.0
Q ss_pred CChHHHHHHHhhhh
Q 037057 154 IGSEQMAELMGDAG 167 (230)
Q Consensus 154 lsS~efA~~L~~~~ 167 (230)
++-+++++.+....
T Consensus 85 ~~~~~~~~~~~~~l 98 (306)
T 3r40_A 85 YTKRAMAKQLIEAM 98 (306)
T ss_dssp GSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444444433
No 120
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}
Probab=23.24 E-value=91 Score=23.72 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=3.5
Q ss_pred EEEEcCCCC
Q 037057 80 VITVGKKRS 88 (230)
Q Consensus 80 IiaVGK~k~ 88 (230)
|++-|-.-.
T Consensus 25 v~lhG~~~~ 33 (272)
T 3fsg_A 25 IFLHGLSLD 33 (272)
T ss_dssp EEECCTTCC
T ss_pred EEEeCCCCc
Confidence 333444333
No 121
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=23.09 E-value=2.7e+02 Score=21.67 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLV 213 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILl 213 (230)
+.+.. ++..++.+|.. ++..+...+..... .++.|+.|...-+... ...|..++...+..-..-.+.-++
T Consensus 62 l~~~~-~~~~v~~vD~s------~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l 131 (234)
T 3dtn_A 62 LMEKY-PEATFTLVDMS------EKMLEIAKNRFRGN-LKVKYIEADYSKYDFE--EKYDMVVSALSIHHLEDEDKKELY 131 (234)
T ss_dssp HHHHC-TTCEEEEEESC------HHHHHHHHHHTCSC-TTEEEEESCTTTCCCC--SCEEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHhC-CCCeEEEEECC------HHHHHHHHHhhccC-CCEEEEeCchhccCCC--CCceEEEEeCccccCCHHHHHHHH
Confidence 34444 35678888863 34444444432222 2799999987766644 566766665444333333444577
Q ss_pred HHHHHHH
Q 037057 214 EQLYRSW 220 (230)
Q Consensus 214 EQIYRA~ 220 (230)
++++|..
T Consensus 132 ~~~~~~L 138 (234)
T 3dtn_A 132 KRSYSIL 138 (234)
T ss_dssp HHHHHHE
T ss_pred HHHHHhc
Confidence 8888764
No 122
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11}
Probab=22.81 E-value=58 Score=26.02 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=5.4
Q ss_pred HHHHHHhhcCCC
Q 037057 130 EDMAVMNIISSD 141 (230)
Q Consensus 130 E~e~Il~~i~~~ 141 (230)
.-..+++.+.-+
T Consensus 71 dl~~~l~~l~~~ 82 (268)
T 3v48_A 71 ELHQALVAAGIE 82 (268)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 334455555433
No 123
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A
Probab=22.77 E-value=50 Score=25.78 Aligned_cols=12 Identities=0% Similarity=-0.133 Sum_probs=5.0
Q ss_pred ChHHHHHHHhhh
Q 037057 155 GSEQMAELMGDA 166 (230)
Q Consensus 155 sS~efA~~L~~~ 166 (230)
+-+++++.+...
T Consensus 80 ~~~~~~~~~~~~ 91 (299)
T 3g9x_A 80 FFDDHVRYLDAF 91 (299)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 334444444433
No 124
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=22.33 E-value=1.5e+02 Score=21.86 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=28.8
Q ss_pred EEEEeCCCCCCCh-----------HHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 144 VVMLDENGLDIGS-----------EQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 144 vIlLDe~Gk~lsS-----------~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
+|++|.+|-.+++ +...+.|.++...|. .++++-|-+.
T Consensus 3 ~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~l~~l~~~Gi-~~~iaTGR~~ 51 (126)
T 1xpj_A 3 KLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGF-EIVISTARNM 51 (126)
T ss_dssp EEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTC-EEEEEECTTT
T ss_pred EEEEecCCCCCCCCCCccccCCCCHHHHHHHHHHHhCCC-eEEEEeCCCh
Confidence 5888999988854 457788888887775 5888887764
No 125
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.17 E-value=2.7e+02 Score=21.29 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=55.2
Q ss_pred hhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCC-----------c
Q 037057 136 NIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVL-----------N 204 (230)
Q Consensus 136 ~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTf-----------p 204 (230)
..+++++.+|++.-.|+.-...+.++... ..|. .++.|.+.+. ..+.+.||..|-+..-.- |
T Consensus 75 ~~~~~~d~vI~iS~sG~t~~~~~~~~~ak---~~g~-~vi~IT~~~~---s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~ 147 (186)
T 1m3s_A 75 PPLAEGDLVIIGSGSGETKSLIHTAAKAK---SLHG-IVAALTINPE---SSIGKQADLIIRMPGSPKDQSNGSYKTIQP 147 (186)
T ss_dssp CCCCTTCEEEEECSSSCCHHHHHHHHHHH---HTTC-EEEEEESCTT---SHHHHHCSEEEECSCCSCC-----CCCCSS
T ss_pred cCCCCCCEEEEEcCCCCcHHHHHHHHHHH---HCCC-EEEEEECCCC---CchHHhCCEEEEeCCccccCCCCccccccc
Confidence 45678999999999999765555555554 4553 4555544332 357778898886643221 1
Q ss_pred --H--HHHHHHHHHHHHHHHHHhcCC
Q 037057 205 --H--QIALLVLVEQLYRSWTILKGQ 226 (230)
Q Consensus 205 --H--qLaRLILlEQIYRA~tIl~g~ 226 (230)
- +.+-+++++=||-++....|.
T Consensus 148 ~~s~~~~~~~~~~d~L~~~~~~~~~~ 173 (186)
T 1m3s_A 148 MGSLFEQTLLLFYDAVILKLMEKKGL 173 (186)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 125678999999888877664
No 126
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=22.13 E-value=91 Score=23.89 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=3.1
Q ss_pred EEEEcCC
Q 037057 80 VITVGKK 86 (230)
Q Consensus 80 IiaVGK~ 86 (230)
|++-|-.
T Consensus 16 vllHG~~ 22 (267)
T 3sty_A 16 VLVHAAF 22 (267)
T ss_dssp EEECCTT
T ss_pred EEECCCC
Confidence 4444543
No 127
>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum}
Probab=22.04 E-value=97 Score=23.11 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=13.7
Q ss_pred ChHHHHHHHhhhh------hcCCceEEEEEeCCCC
Q 037057 155 GSEQMAELMGDAG------STGASRISFCIGGPYG 183 (230)
Q Consensus 155 sS~efA~~L~~~~------~~G~~~i~FiIGGa~G 183 (230)
+-+++++.+.... +.-. -++++|-|.|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~--~~~l~G~S~G 94 (245)
T 3e0x_A 62 TVYGYIDNVANFITNSEVTKHQK--NITLIGYSMG 94 (245)
T ss_dssp SHHHHHHHHHHHHHHCTTTTTCS--CEEEEEETHH
T ss_pred CHHHHHHHHHHHHHhhhhHhhcC--ceEEEEeChh
Confidence 4455555555554 3322 3455565555
No 128
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=21.89 E-value=2.8e+02 Score=21.39 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=51.5
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
.|.++|+.|.. ++...+++..++++. .+++.... +. .|+...+...++ -+|++|..-..+
T Consensus 2 ~M~~~ilivdd--~~~~~~~l~~~L~~~----g~~v~~~~-------~~-----~~al~~~~~~~~--dlvllD~~l~~~ 61 (230)
T 2oqr_A 2 AMATSVLIVED--EESLADPLAFLLRKE----GFEATVVT-------DG-----PAALAEFDRAGA--DIVLLDLMLPGM 61 (230)
T ss_dssp --CCEEEEECS--CHHHHHHHHHHHHHT----TCEEEEEC-------SH-----HHHHHHHHHHCC--SEEEEESSCSSS
T ss_pred CCCCeEEEEeC--CHHHHHHHHHHHHHC----CCEEEEEC-------CH-----HHHHHHHhccCC--CEEEEECCCCCC
Confidence 37788988864 677888888888763 23443331 11 233333333333 378899887778
Q ss_pred ChHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 155 GSEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 155 sS~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
+..++.+.|.+. ....++++.+.
T Consensus 62 ~g~~~~~~l~~~---~~~~ii~lt~~ 84 (230)
T 2oqr_A 62 SGTDVCKQLRAR---SSVPVIMVTAR 84 (230)
T ss_dssp CHHHHHHHHHHH---CSCSEEEEECC
T ss_pred CHHHHHHHHHcC---CCCCEEEEeCC
Confidence 999999999874 22346666543
No 129
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=21.88 E-value=1.3e+02 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=21.9
Q ss_pred EEEEeCCCCCCCh-----HHHHHHHhhhhhcCCceEEEEEeCCC
Q 037057 144 VVMLDENGLDIGS-----EQMAELMGDAGSTGASRISFCIGGPY 182 (230)
Q Consensus 144 vIlLDe~Gk~lsS-----~efA~~L~~~~~~G~~~i~FiIGGa~ 182 (230)
+|++|.+|-.+++ ++..+.|.++...|. .++++-|=+.
T Consensus 7 li~~DlDGTLl~~~~~i~~~~~~aL~~l~~~Gi-~vviaTGR~~ 49 (282)
T 1rkq_A 7 LIAIDMDGTLLLPDHTISPAVKNAIAAARARGV-NVVLTTGRPY 49 (282)
T ss_dssp EEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTC-EEEEECSSCG
T ss_pred EEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCC-EEEEEcCCCH
Confidence 5666666666654 455566666665553 3555555554
No 130
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=21.86 E-value=4.3e+02 Score=23.56 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=65.4
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCC-CCceEEEeecCCCCCCcHHHHHHH-------------------HHHHH
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYY-CKVEDLQLRSNPKNTGDVKAQIKD-------------------EDMAV 134 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y-~~leiieik~~~~~~~~~~~~~~~-------------------E~e~I 134 (230)
.|++.|++.-...+..+.+.++.-.+-+..+ ...|++-+-+.... ...+..++. -+..+
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD-~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~ 171 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSED-GTAGVAASHGAEVYSENELMSGYGDAHGKGDAM 171 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSS-SHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCc-cHHHHHHHhCchhcccceeEecCCccCCHHHHH
Confidence 5788888888877888888888776655555 46788877643211 111111100 11122
Q ss_pred Hhhc--CCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeC
Q 037057 135 MNII--SSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGG 180 (230)
Q Consensus 135 l~~i--~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGG 180 (230)
...+ ..+++++.||.++..++...+.+.++..... .++.+++|.
T Consensus 172 n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~--p~~d~v~G~ 217 (387)
T 3f1y_A 172 WRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEV--PGVRFVKAA 217 (387)
T ss_dssp HHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHS--TTCCEEEEE
T ss_pred HHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHC--CCceEEEEe
Confidence 2222 2578999999999878999999988877543 246677773
No 131
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=21.81 E-value=1.4e+02 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=20.8
Q ss_pred CCCHHHHhcccceEEeecCCCcHHHHHH
Q 037057 183 GHGPKMRERANISIKLSSMVLNHQIALL 210 (230)
Q Consensus 183 Gls~~v~~rAd~~LSLS~mTfpHqLaRL 210 (230)
.++++++.|.+..+.+.+++ +.++..+
T Consensus 198 ~~~~~l~~R~~~~~~~~p~~-~~~~~~i 224 (311)
T 4fcw_A 198 HFRPEFLNRLDEIVVFRPLT-KEQIRQI 224 (311)
T ss_dssp HSCHHHHTTCSEEEECCCCC-HHHHHHH
T ss_pred hCCHHHHhcCCeEEEeCCCC-HHHHHHH
Confidence 47889999999999999988 4444443
No 132
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Probab=21.78 E-value=70 Score=24.85 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.1
Q ss_pred EEEEcCC
Q 037057 80 VITVGKK 86 (230)
Q Consensus 80 IiaVGK~ 86 (230)
|++-|-.
T Consensus 32 v~lHG~~ 38 (297)
T 2qvb_A 32 VFQHGNP 38 (297)
T ss_dssp EEECCTT
T ss_pred EEECCCC
Confidence 4444443
No 133
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans}
Probab=21.54 E-value=50 Score=26.27 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.9
Q ss_pred HHHhhcC
Q 037057 133 AVMNIIS 139 (230)
Q Consensus 133 ~Il~~i~ 139 (230)
.+++.+.
T Consensus 89 ~~l~~l~ 95 (285)
T 3bwx_A 89 ALLAQEG 95 (285)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 3444443
No 134
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=21.54 E-value=67 Score=23.07 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=33.3
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCH
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGP 186 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~ 186 (230)
.++++..+|+.|..|. .|...|..|.+ .|..+ ..+-||-.++..
T Consensus 52 ~~~~~~~ivvyC~~G~--rs~~aa~~L~~---~G~~~-~~l~GG~~~W~~ 95 (110)
T 2k0z_A 52 SQHKDKKVLLHCRAGR--RALDAAKSMHE---LGYTP-YYLEGNVYDFEK 95 (110)
T ss_dssp HSCSSSCEEEECSSSH--HHHHHHHHHHH---TTCCC-EEEESCGGGTTT
T ss_pred ccCCCCEEEEEeCCCc--hHHHHHHHHHH---CCCCE-EEecCCHHHHHH
Confidence 3677788999998884 57788888875 47777 788899776643
No 135
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.51 E-value=1.4e+02 Score=24.09 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=38.4
Q ss_pred HHHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEe-------CCCCCCHHHHhcccceEEee
Q 037057 133 AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIG-------GPYGHGPKMRERANISIKLS 199 (230)
Q Consensus 133 ~Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIG-------Ga~Gls~~v~~rAd~~LSLS 199 (230)
.+++.+..+.-+|++||-. -++.+. -+.++...+.|. -+++.| -+++-++++.+.||..--+.
T Consensus 73 ~i~~~~~~~~dvViIDEaq-fl~~~~-v~~l~~l~~~~~--~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 73 EILKYFEEDTEVIAIDEVQ-FFDDEI-VEIVNKIAESGR--RVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp HHHHHCCTTCSEEEECSGG-GSCTHH-HHHHHHHHHTTC--EEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHHHHHhccCCEEEEECCC-CCCHHH-HHHHHHHHhCCC--EEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3444444333489999843 466554 566777655543 233334 25577899999999765443
No 136
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.35 E-value=2.7e+02 Score=21.14 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=41.9
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeec
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSS 200 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~ 200 (230)
+...+++++.+|++.-.|+.-...+.++...+ .|. .++-+.+.+. ..+.+.||..+....
T Consensus 104 ~~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~---~g~-~vi~iT~~~~---s~L~~~ad~~l~~~~ 163 (188)
T 1tk9_A 104 VEALGNEKDVLIGISTSGKSPNVLEALKKAKE---LNM-LCLGLSGKGG---GMMNKLCDHNLVVPS 163 (188)
T ss_dssp HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHH---TTC-EEEEEEEGGG---TTHHHHCSEEEEESC
T ss_pred HHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-EEEEEeCCCC---cchHHcCCEEEEeCC
Confidence 34557899999999999988666666666554 454 4666666443 346777998886653
No 137
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=21.33 E-value=2.9e+02 Score=21.36 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=22.1
Q ss_pred CccEEEEEEcCCC-ChHHHHHHHHHHhhhcCCCCceEEEee
Q 037057 75 ALPIRVITVGKKR-SLGVQLVVDEYIGKLKYYCKVEDLQLR 114 (230)
Q Consensus 75 ~MkI~IiaVGK~k-~~~~~~~i~eY~KRL~~y~~leiieik 114 (230)
+|||-+ ..|..+ .+.-..+.+...+.+..-..++++++.
T Consensus 6 ~Mkili-i~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~ 45 (193)
T 1rtt_A 6 DIKVLG-ISGSLRSGSYNSAALQEAIGLVPPGMSIELADIS 45 (193)
T ss_dssp -CEEEE-EESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCT
T ss_pred CceEEE-EECCCCCCChHHHHHHHHHHhccCCCeEEEEeHH
Confidence 477744 457765 455566666667777633444544443
No 138
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.28 E-value=2.4e+02 Score=20.36 Aligned_cols=83 Identities=6% Similarity=0.034 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCh
Q 037057 77 PIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGS 156 (230)
Q Consensus 77 kI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~lsS 156 (230)
+.+|+.|.. +....+.+.+++++.. +++..... ..|+...++..++ -+|++|..-...+.
T Consensus 7 ~~~ILivdd--~~~~~~~l~~~L~~~g----~~v~~~~~------------~~~al~~l~~~~~--dlii~D~~l~~~~g 66 (154)
T 3gt7_A 7 AGEILIVED--SPTQAEHLKHILEETG----YQTEHVRN------------GREAVRFLSLTRP--DLIISDVLMPEMDG 66 (154)
T ss_dssp CCEEEEECS--CHHHHHHHHHHHHTTT----CEEEEESS------------HHHHHHHHTTCCC--SEEEEESCCSSSCH
T ss_pred CCcEEEEeC--CHHHHHHHHHHHHHCC----CEEEEeCC------------HHHHHHHHHhCCC--CEEEEeCCCCCCCH
Confidence 356777754 6777888888887652 34433311 1344445544433 38899998778899
Q ss_pred HHHHHHHhhhhhcCCceEEEEEe
Q 037057 157 EQMAELMGDAGSTGASRISFCIG 179 (230)
Q Consensus 157 ~efA~~L~~~~~~G~~~i~FiIG 179 (230)
.++.+.|.+......-.++++.+
T Consensus 67 ~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 67 YALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEEC
T ss_pred HHHHHHHHhCCCcCCCCEEEEEC
Confidence 99999998753222233555544
No 139
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.20 E-value=2.1e+02 Score=19.79 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=45.0
Q ss_pred ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCce-EEEeecCCCCCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057 76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI 154 (230)
Q Consensus 76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~le-iieik~~~~~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l 154 (230)
++.+|+.|.. +....+.+..++.+... ++ +..... ..|+...+...++ -+|++|..-...
T Consensus 7 ~~~~iLivdd--~~~~~~~l~~~L~~~~~---~~~v~~~~~------------~~~a~~~l~~~~~--dlii~d~~l~~~ 67 (143)
T 3cnb_A 7 NDFSILIIED--DKEFADMLTQFLENLFP---YAKIKIAYN------------PFDAGDLLHTVKP--DVVMLDLMMVGM 67 (143)
T ss_dssp --CEEEEECS--CHHHHHHHHHHHHHHCT---TCEEEEECS------------HHHHHHHHHHTCC--SEEEEETTCTTS
T ss_pred CCceEEEEEC--CHHHHHHHHHHHHhccC---ccEEEEECC------------HHHHHHHHHhcCC--CEEEEecccCCC
Confidence 3467888864 67777888888877423 34 222211 1234444444333 388899887778
Q ss_pred ChHHHHHHHhhh
Q 037057 155 GSEQMAELMGDA 166 (230)
Q Consensus 155 sS~efA~~L~~~ 166 (230)
+..++.+.|.+.
T Consensus 68 ~g~~~~~~l~~~ 79 (143)
T 3cnb_A 68 DGFSICHRIKST 79 (143)
T ss_dssp CHHHHHHHHHTS
T ss_pred cHHHHHHHHHhC
Confidence 999999999873
No 140
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Probab=20.98 E-value=57 Score=25.98 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=3.2
Q ss_pred EEEeCCCC
Q 037057 176 FCIGGPYG 183 (230)
Q Consensus 176 FiIGGa~G 183 (230)
+++|=|.|
T Consensus 93 ~lvGhS~G 100 (277)
T 1brt_A 93 VLVGFSTG 100 (277)
T ss_dssp EEEEEGGG
T ss_pred EEEEECcc
Confidence 33444433
No 141
>4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A
Probab=20.51 E-value=91 Score=23.67 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=2.7
Q ss_pred EEeCCCC
Q 037057 177 CIGGPYG 183 (230)
Q Consensus 177 iIGGa~G 183 (230)
++|-|.|
T Consensus 94 l~GhS~G 100 (269)
T 4dnp_A 94 YVGHSVS 100 (269)
T ss_dssp EEEETHH
T ss_pred EEccCHH
Confidence 3343333
No 142
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=20.51 E-value=2.7e+02 Score=22.61 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=54.6
Q ss_pred hcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCC--------CCHHHHhcccceEEee---------
Q 037057 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYG--------HGPKMRERANISIKLS--------- 199 (230)
Q Consensus 137 ~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~G--------ls~~v~~rAd~~LSLS--------- 199 (230)
.+.++|.+|++.-.|+.-...+.++...+ .|. .++-|.+.++- -...+.+.||..|-..
T Consensus 105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~---~G~-~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~~~~~~~e~~~~ 180 (243)
T 3cvj_A 105 QVTNKDVIMIISNSGRNTVPVEMAIESRN---IGA-KVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQ 180 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHH---HTC-EEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEECCCCTTSCCEE
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-EEEEEeCCcccccccccCCCcCcHHHhCCEEEECCCCcccceee
Confidence 37889999999999998777777776655 453 45555554211 0114667788877442
Q ss_pred ------cCCCcHHHHHHHHHHHHHHHHHH
Q 037057 200 ------SMVLNHQIALLVLVEQLYRSWTI 222 (230)
Q Consensus 200 ------~mTfpHqLaRLILlEQIYRA~tI 222 (230)
++.++-.++-+++++-||-++.-
T Consensus 181 ~~~~~~~~~~~s~~~~~~il~~L~~~~~~ 209 (243)
T 3cvj_A 181 IANSEIYSGATSDSIGCFLAQALIVETLH 209 (243)
T ss_dssp CSSSSCEECCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 12344558999999998876543
No 143
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*
Probab=20.46 E-value=1e+02 Score=23.60 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=5.4
Q ss_pred HHHHHhhcCCCCe
Q 037057 131 DMAVMNIISSDDW 143 (230)
Q Consensus 131 ~e~Il~~i~~~~~ 143 (230)
-..+++.++.+.+
T Consensus 76 ~~~~l~~~~~~~~ 88 (267)
T 3fla_A 76 LLEVLRPFGDRPL 88 (267)
T ss_dssp HHHHTGGGTTSCE
T ss_pred HHHHHHhcCCCce
Confidence 3344444443333
No 144
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.39 E-value=3e+02 Score=21.14 Aligned_cols=80 Identities=16% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHhhcCCCCeEEEEeCCCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCc-HHHHHHHH
Q 037057 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLN-HQIALLVL 212 (230)
Q Consensus 134 Il~~i~~~~~vIlLDe~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfp-HqLaRLIL 212 (230)
+...+++++.+|++.-.|+.-...+.++...+ .|. .++.+.+-+. ..+.+.||..|.+..-.-+ -+.+-+.+
T Consensus 110 ~~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~---~g~-~vI~IT~~~~---s~L~~~ad~~l~~~~~~~~~~~~~~l~i 182 (198)
T 2xbl_A 110 VQALGNEGDVLIGYSTSGKSPNILAAFREAKA---KGM-TCVGFTGNRG---GEMRELCDLLLEVPSADTPKIQEGHLVL 182 (198)
T ss_dssp HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHH---TTC-EEEEEECSCC---CTHHHHCSEEEECSCSSHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHH---CCC-eEEEEECCCC---CcHHHhCCEEEEeCCCcHHHHHHHHHHH
Confidence 34557899999999999988666666665554 453 4555544333 3466778988765432111 24455556
Q ss_pred HHHHHHHH
Q 037057 213 VEQLYRSW 220 (230)
Q Consensus 213 lEQIYRA~ 220 (230)
++=||-++
T Consensus 183 ~~~L~~~~ 190 (198)
T 2xbl_A 183 GHIVCGLV 190 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 145
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A
Probab=20.27 E-value=69 Score=25.13 Aligned_cols=30 Identities=3% Similarity=-0.052 Sum_probs=13.6
Q ss_pred CChHHHHHHHhhhhhcCCc-eEEEEEeCCCC
Q 037057 154 IGSEQMAELMGDAGSTGAS-RISFCIGGPYG 183 (230)
Q Consensus 154 lsS~efA~~L~~~~~~G~~-~i~FiIGGa~G 183 (230)
++-+++++.+....+.-.. +-+.++|-|.|
T Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~G 110 (302)
T 1mj5_A 80 YAYAEHRDYLDALWEALDLGDRVVLVVHDWG 110 (302)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTCEEEEEEHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4445555555444433211 23455555555
No 146
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Probab=20.22 E-value=97 Score=27.04 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=39.8
Q ss_pred CCCCeEEEEeCCCC-------------------------CCChHHHHHHHhhhhhc-CCceEEEEEeCCCCCCHHHH---
Q 037057 139 SSDDWVVMLDENGL-------------------------DIGSEQMAELMGDAGST-GASRISFCIGGPYGHGPKMR--- 189 (230)
Q Consensus 139 ~~~~~vIlLDe~Gk-------------------------~lsS~efA~~L~~~~~~-G~~~i~FiIGGa~Gls~~v~--- 189 (230)
..+-.+|++|-+|- .++-+++++.+....+. +..+.+.+||.|.|=.-.+.
T Consensus 140 ~~~~~Vi~~D~~G~~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~l~~~~~~~lvGhSmGG~ial~~A~ 219 (444)
T 2vat_A 140 TSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAF 219 (444)
T ss_dssp TTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTCCCEEEEEEETHHHHHHHHHGG
T ss_pred ccCCEEEEecCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHHHhcCCccceEEEEECHHHHHHHHHHH
Confidence 45567899998871 24677888877666543 44455889999888322221
Q ss_pred ---hcccceEEeecCCC
Q 037057 190 ---ERANISIKLSSMVL 203 (230)
Q Consensus 190 ---~rAd~~LSLS~mTf 203 (230)
++.+..+.++....
T Consensus 220 ~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 220 FGPEYVRKIVPIATSCR 236 (444)
T ss_dssp GCTTTBCCEEEESCCSB
T ss_pred hChHhhheEEEEecccc
Confidence 23344556665543
No 147
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=20.02 E-value=84 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=23.8
Q ss_pred CccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEee
Q 037057 75 ALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR 114 (230)
Q Consensus 75 ~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik 114 (230)
.|+|.|+.+| -++.+.+.+.+++++. ..+++...+
T Consensus 3 ~m~I~ivpig--v~~~~l~~l~~~l~~~---~gl~v~~~~ 37 (163)
T 4axq_A 3 HMKIYIQPLS--VNSHTVEVLANSLPKI---FNAEVFVLP 37 (163)
T ss_dssp CEEEEEEEES--CCHHHHHHHHHHHHHH---HTEEEEECC
T ss_pred ceEEEEEECC--CCHHHHHHHHHHHHHH---hCCeeEecC
Confidence 5899999999 4555666677777766 455544433
Done!