BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037058
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/512 (47%), Positives = 344/512 (67%), Gaps = 13/512 (2%)
Query: 30 SFLQCFSSNLQHPNEASNVFL--TTNXXXXXXXXXXXIRNHRFLNNSTLKPQFIITPSHV 87
+FL+CFS ++ PN +N L T + I+N RF++++T KP I+TPS+
Sbjct: 6 NFLKCFSKHI--PNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 88 SHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVE 147
SHIQA I CSK+ GLQ+R RS GHD EG+SY++ VPF+++DL N+ SI++D+ +++AWVE
Sbjct: 64 SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 123
Query: 148 SGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGLAADNIIDAKIV 207
+GA LGE+Y+ I EK++ FP G C + R YGLAADNIIDA +V
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 208 DVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLE-QGAS 266
+V+GK+L RKSMGEDLFWAIRGGGG +FG+I +WK+K+V VP T+F+V+ +E G
Sbjct: 184 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243
Query: 267 KLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVS-FGSLYLGGVEKLVSLLQ 325
KL KWQN+A++ D+D+ L + + T + G NKT + F S++ GGV+ LV L+
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHF-ITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302
Query: 326 ESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLN----VLLDRSTQYKGFLKAKSDYLT 381
+SFP+LG+ + +C E +WI + ++++G ++ N +LLDRS K K DY+
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVK 362
Query: 382 KPVSETGLEGLYRILLEEE--APVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNW 439
KP+ ET + + L EE+ A + +L PYGG M EIS+S I FPHR G +Y + Y +W
Sbjct: 363 KPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASW 422
Query: 440 DEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLK 499
+++++ EKHI+ +R +Y + PYVS+ PR AYLNYRDLDLG+ N+A ++Y QA +WG K
Sbjct: 423 EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEK 482
Query: 500 YFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP 531
YF NF RLV+VKT VDP+NFFRNEQSIP P
Sbjct: 483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/513 (42%), Positives = 316/513 (61%), Gaps = 24/513 (4%)
Query: 21 SATSYSTQV--SFLQCFSSNLQHPNEASNVFLTTNXXXXXXXXXXXIRNHRFLNNSTLKP 78
+ Y+ QV FL C + ++ P + + +RN +FL++ T+KP
Sbjct: 1 APPPYAKQVERDFLTCLTKDIP-PRQ----LYAKSSPAYASVWSSTVRNIKFLSDKTVKP 55
Query: 79 QFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVP--FLIIDLFNLRSIR 136
+IITP++ SHIQAA+ C +++G+++RVRS GHDYEGLSY ++ P F ++D+ +R++
Sbjct: 56 LYIITPTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVS 115
Query: 137 VDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGL 196
+D +AWV+SGA LG+LY+ IA+ S GFPAG C + RKYG
Sbjct: 116 IDGKAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGT 175
Query: 197 AADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFN 256
AADN+IDAK+VD G++L RK+MGED FWAIRGGGG SFG++ SW+VK++PVP VTVF
Sbjct: 176 AADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQ 235
Query: 257 VRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGG 316
V +++GA L+ KWQ VA L +D+ + ++ + F +LYLG
Sbjct: 236 VHKGIKEGAIDLVTKWQTVAPALPDDLMIR-IMAMGQGAM------------FEALYLGT 282
Query: 317 VEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAK 376
+ LV L+ FP+LG+ +C EMTWI+SV Y K ++ LL+R++ K F K K
Sbjct: 283 CKDLVLLMTARFPELGMNATHCKEMTWIESVPYIP-MGPKGTVRDLLNRTSNIKAFGKYK 341
Query: 377 SDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYL 436
SDY+ +P+ ++ E ++ L++ A V+I+ PYGG ++ + +S FP R G ++ IQY+
Sbjct: 342 SDYVLEPIPKSDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYV 401
Query: 437 TNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGN-SSYAQAYV 495
W E R +Y +M PYVSK PR AY+NYRDLDLG N GN S+YA V
Sbjct: 402 VYWFGEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKV 461
Query: 496 WGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
WG KYFK NF+RL R K +DP+++FRNEQSIP
Sbjct: 462 WGEKYFKGNFERLARTKGKIDPEDYFRNEQSIP 494
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/469 (43%), Positives = 293/469 (62%), Gaps = 19/469 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVP- 123
IRN R+ + +KP +IITP+ VSHIQ+A+ C +++ +++RVRS GHDYEGLSY + P
Sbjct: 40 IRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPE 99
Query: 124 -FLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXX 182
F ++DL +R++ VD +AWV+SGA LGELY+ I + S FPAG C
Sbjct: 100 TFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNF 159
Query: 183 XXXXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWK 242
+ RKYG+AA+N+ID K+VD NGK+ +KSMG+D FWA+RGGGG SFG++ +W+
Sbjct: 160 AGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQ 219
Query: 243 VKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSN 302
VK++PVP TVT+F + T+ +GA ++ KWQ VA +L D+ + + + +T
Sbjct: 220 VKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKAT------- 272
Query: 303 KTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSL-NV 361
F ++YLG + L L+ FP+LG+ +C EM+WIQS+ F +D+L +
Sbjct: 273 ------FEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIP-FVHLGHRDALEDD 325
Query: 362 LLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRI-LLEEEAPVLILTPYGGRMSEISDSE 420
LL+R +K F + KSDY+ +P +T E + L++ A ++I PYG +S +S
Sbjct: 326 LLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESA 385
Query: 421 IAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHRKG ++ IQY+ W +S + +Y YM+PYVSK PR AY NYRD+DLG
Sbjct: 386 TPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLG 445
Query: 481 RNNNAGN-SSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
RN + S+YA VWG KYFK NF+RL K VDP ++FRNEQSIP
Sbjct: 446 RNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIP 494
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 275/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS GH YEGLSY +D PF
Sbjct: 58 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF 117
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG C
Sbjct: 118 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISG 177
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 178 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 237
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 238 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 288
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 289 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 345
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 346 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 405
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 406 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 465
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 466 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 275/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS GH YEGLSY +D PF
Sbjct: 39 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF 98
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG C
Sbjct: 99 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISG 158
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 159 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 218
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 219 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 269
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 270 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 326
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 327 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 386
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 387 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 446
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 447 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 275/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS GH YEGLSY +D PF
Sbjct: 39 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF 98
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG C
Sbjct: 99 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISG 158
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 159 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 218
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 219 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 269
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 270 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 326
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 327 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 386
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 387 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 446
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 447 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 275/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS GH YEGLSY +D PF
Sbjct: 33 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF 92
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG C
Sbjct: 93 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISG 152
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 153 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 212
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 213 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 263
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 264 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 320
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 321 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 380
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 381 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 440
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 441 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 274/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS G YEGLSY +D PF
Sbjct: 36 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPF 95
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG C
Sbjct: 96 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISG 155
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 156 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 215
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 216 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 266
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 267 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 323
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 324 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 383
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 384 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 443
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 444 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 495
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 274/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS GH YEGLSY +D PF
Sbjct: 33 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF 92
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG
Sbjct: 93 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISG 152
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 153 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 212
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 213 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 263
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 264 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 320
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 321 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 380
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 381 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 440
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 441 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 345 bits (884), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 274/472 (58%), Gaps = 20/472 (4%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF 124
I+N F N+ KP II P + IRC ++ +R+RS GH YEGLSY +D PF
Sbjct: 33 IQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF 92
Query: 125 LIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
++IDL NL + +D+++E+AWVESG+ LGELY+ I E S GF AG
Sbjct: 93 ILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISG 152
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVK 244
+ RKYGLAADN++DA ++D NG IL R++MGED+FWAIRGGGG +G I++WK+K
Sbjct: 153 GGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIK 212
Query: 245 IVPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNK 303
++PVP+ VTVF V + A+ LL KWQ VA EL+ED F +VL AD K
Sbjct: 213 LLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED-FTLSVLGGADE--------K 263
Query: 304 TVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLL 363
V ++ + G S FP+LGL+ E+ EM+W +S Y AG T LN
Sbjct: 264 QVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN--- 320
Query: 364 DRSTQY-KGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
+R ++ + K K D +P+ GL L +E + L +GG+MS+IS
Sbjct: 321 NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTP 380
Query: 423 FPHRKGNIYAIQYLTNWDEEDETEK--HISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG 480
FPHR G ++Y+ W++ ++ +K + + ++Y++MKP+VSK PR Y+N+ DLDLG
Sbjct: 381 FPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLG 440
Query: 481 ----RNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
N N++ + WG YF +N++RL+R KT +DP+N F + QSIP
Sbjct: 441 GIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/477 (23%), Positives = 194/477 (40%), Gaps = 71/477 (14%)
Query: 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRV 137
P I +HIQ+A++C+K+ L+V +S GH Y + + L++ L + +
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 138 DIDNES-AWVESGAILGELYHKIAEKSKLYG--FPAGSCXXXXXXXXXXXXXXXXIFRKY 194
D A VE GA LG L + +K YG G+C +
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDK---YGRAISHGTCPGVGISGHFAHGGFGFSSHMH 153
Query: 195 GLAADNIIDAKIVDVNGKILTRKSM-GEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVT 253
GLA D+++ +V +G+I+ + DLFW I+ G G++FG++ WK+ P P+ +T
Sbjct: 154 GLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLT 212
Query: 254 VFNVRYTLEQGASKL--LQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGS 311
F V + S L ++ ++ A + A EV N +
Sbjct: 213 RFGVTLNWKNKTSALKGIEAVEDYARWV-------APREVNFRIGDYGAGNPGIE----G 261
Query: 312 LYLGGVEKLVSLLQESFPQL--GLMRENCTEMTWIQSVLYFAGFSTKD------------ 357
LY G E+ + Q L G + T + WI+SVL ++ F D
Sbjct: 262 LYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYA 321
Query: 358 -SLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSE- 415
SL + + K F+ D K +++ L +GG+ S+
Sbjct: 322 KSLTLKSIKGDAVKNFVDYYFDVSNK--------------VKDRFWFYQLDVHGGKNSQV 367
Query: 416 --ISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRA---A 470
++++E A+PHR ++ IQ+ +D + +S + L ++ P++
Sbjct: 368 TKVTNAETAYPHRD-KLWLIQFYDRYDNNQTYPE--TSFKFLDGWVNSVTKALPKSDWGM 424
Query: 471 YLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSI 527
Y+NY D + R+ YA Y+ N RL ++K DP + F Q++
Sbjct: 425 YINYADPRMDRD-------YATKV-----YYGENLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/497 (24%), Positives = 207/497 (41%), Gaps = 51/497 (10%)
Query: 67 NHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLI 126
N RF+ + P+ I + I+ + + ++G +V VRS GH YE +DV ++
Sbjct: 52 NLRFVGD----PEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RVV 106
Query: 127 IDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYG--FPAGSCXXXXXXXXXXX 184
+D+ L ++ D + + VE+GA LG +Y + +++G P G+C
Sbjct: 107 MDMSRLSAVGFDEERGAFAVEAGATLGAVYKTL---FRVWGVTLPGGACPDVGAGGHILG 163
Query: 185 XXXXXIFRKYGLAAD--NIIDAKIVDVNGK----ILTRK--SMGEDLFWAIRGGGGASFG 236
+ R +G D + ++ +VD +G I TR+ DL+WA GGGG +FG
Sbjct: 164 GGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFG 223
Query: 237 VIFSWKVKIVP--VPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADS 294
V+ + ++ VP R E + + W+ LDE F V
Sbjct: 224 VVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEG----LDEAAFARLVRNHGRW 279
Query: 295 TTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFS 354
++G + + L L + + G E E T++ +V G
Sbjct: 280 FEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLE-TYLAAVSEGVGVQ 338
Query: 355 T-KDSLNVLLDRSTQYKGFL---------KAKSDYLTKPVSETGLEGLYRILL----EEE 400
D+ + ST++ G K K+ Y + + + LY L +
Sbjct: 339 PHSDTRRLPWLHSTRWPGIAGDGDMTGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYDNP 398
Query: 401 APVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMK 460
A V+ L YGG+++ + A R +I I Y+T W++ + H+ +R LY+ +
Sbjct: 399 AGVVALIAYGGKVNAVPADRTAVAQRD-SILKIVYVTTWEDPAQDPVHVRWIRELYRDVY 457
Query: 461 ------PYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTA 514
P A AY+NY D+DL + N+S W Y+K+ + RL VK
Sbjct: 458 ADTGGVPVPGGAADGAYVNYPDVDLA--DEEWNTS---GVPWSELYYKDAYPRLQAVKAR 512
Query: 515 VDPDNFFRNEQSIPVFP 531
DP N FR+ S+ V P
Sbjct: 513 WDPRNVFRHALSVRVPP 529
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 124/506 (24%), Positives = 202/506 (39%), Gaps = 79/506 (15%)
Query: 67 NHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGH---DYEGLSYVADVP 123
NHRF+ ++P+ P+ + A+++ + G V RS GH D+ G
Sbjct: 28 NHRFV----VEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD--- 80
Query: 124 FLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXX 183
L++DL NL +I D V SGA + ++ + + P G+C
Sbjct: 81 -LVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLVA 138
Query: 184 XXXXXXIFRKYGLAADNI--IDAKIVD-------VNGKILTRKSMGEDLFWAIRGGGGAS 234
+ R+ GL D++ ++ +VD V + +GE LFWA GGGG +
Sbjct: 139 GGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGN 197
Query: 235 FGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVAD- 293
FGV+ +++ + T V R K++ W + DE F+ + +
Sbjct: 198 FGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI----DETSFVTVMRRFFEW 253
Query: 294 -STTSSAGSNKTVL--------VSFGSLYL-----------GGV-EKLVSLLQESFPQLG 332
S GS ++ L VS G L L G + + V+ L E +G
Sbjct: 254 HERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVG 313
Query: 333 LMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGL 392
+ R M+W+ Y S D +V+ RS +KS Y ++ L L
Sbjct: 314 IPRGGV--MSWLTGTRY---MSQADCGDVMGARSA-------SKSAYHRAAPTDEQLSVL 361
Query: 393 YRILLEE---EAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHI 449
+R L + +A ++ YGG ++ S+ A P R ++ + + W + + E H+
Sbjct: 362 HRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDAELDELHL 420
Query: 450 SSMRRLYK------YMKPYVSKAPRAAYLNYRDLDL--GRNNNAGNSSYAQAYVWGLKYF 501
+R LY+ P Y+NY D DL N +G W Y+
Sbjct: 421 GWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEP-------WHHLYY 473
Query: 502 KNNFKRLVRVKTAVDPDNFFRNEQSI 527
K+N+ RL K A DP N F + SI
Sbjct: 474 KDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/478 (24%), Positives = 193/478 (40%), Gaps = 40/478 (8%)
Query: 77 KPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIR 136
+P +I + A+ + + G +V VRS GH +E DV +IID+ L I
Sbjct: 57 EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEIA 115
Query: 137 VDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGL 196
D + +E G L E+Y K+ + P G C + R++G
Sbjct: 116 YDPSMNAFLIEPGNTLSEVYEKLYLGWNVT-IPGGVCGGVGVGGHICGGGYGPLSRQFGS 174
Query: 197 AADNIIDAKIVDVN--GKILT------RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPV 248
D + ++V VN GK R DL+WA GGGG +FGV+ + ++ V
Sbjct: 175 VVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR---V 231
Query: 249 PQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVS 308
P+ V R + A+ L + E F + + ++G +
Sbjct: 232 PEDVGRNPERLLPKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGL 291
Query: 309 FGSLYLGGVEKLVSLLQESF--P-QLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDR 365
+ L +G ++ + + F P Q+ R + + G + + R
Sbjct: 292 WSQLMIG--NEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAEVPEPIEQR 349
Query: 366 ---STQYKGFL----KAKSDYLTKPVSETGLEGLYRILLEEEA---PVLILTPYGGRMSE 415
ST +G K K+ YL K +++ ++ +Y + + + L YGG+++
Sbjct: 350 WLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNT 409
Query: 416 ISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYK--YMK----PYVSKAPRA 469
+ + A P R I + Y+T W KH++ +R+LY Y + P +
Sbjct: 410 VDPAATALPQRDA-ILKVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDG 468
Query: 470 AYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSI 527
AY+NY D DL + N+S W Y+K N RL +VK A DP N F + SI
Sbjct: 469 AYINYPDSDLA--DPGLNTS---GVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSI 521
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 118/501 (23%), Positives = 200/501 (39%), Gaps = 72/501 (14%)
Query: 67 NHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFL- 125
N RF +P + + A+ + G ++ VRS GH +EG D P +
Sbjct: 49 NGRFRG----RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF---VDDPAVR 101
Query: 126 -IIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXX 184
+ID+ +R + D + VE GA LGE Y + + PAG C
Sbjct: 102 AVIDMSQMRQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLG 160
Query: 185 XXXXXIFRKYGLAADNIIDAKIVDVNGKILTRK----SMGED----LFWAIRGGGGASFG 236
+ R+ G+ AD++ ++V V+ RK S +D L+WA GGGG +FG
Sbjct: 161 GGYGPLSRRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFG 220
Query: 237 VIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQK---WQNVAHELDEDIFLHAVLE--V 291
++ + + T + L + + L+ W A L E+ F +
Sbjct: 221 IVTRYWFRT----PGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGA 274
Query: 292 ADSTTSSAGSNKTVLVSF--------GSLYL-----GGVEKLVSLLQESFPQLGLMRENC 338
+ S+AG+ + S G + L GG++ +LL + +
Sbjct: 275 WHQSNSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAV------- 327
Query: 339 TEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGF--LKAKSDYLTKPVSETGLEGLYRIL 396
E T ++ + ST+ L L GF K+K YL KP + LYR L
Sbjct: 328 NEGTGVEPAVQ---RSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHL 384
Query: 397 LEEEA--PVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRR 454
+ + L YGG+++ + ++ A R +I + W + + +++ +R
Sbjct: 385 SADSQVWGEVSLYSYGGKVNSVPETATATAQRD-SIIKVWMSATWMDPAHDDANLAWIRE 443
Query: 455 LYKYMKPYVSKAP------RAAYLNYRDLDL--GRNNNAGNSSYAQAYVWGLKYFKNNFK 506
+Y+ + P ++NY D+DL R N +G W Y+K N+
Sbjct: 444 IYREIFATTGGVPVPDDRTEGTFINYPDVDLVDERWNTSG-------VPWYTLYYKGNYP 496
Query: 507 RLVRVKTAVDPDNFFRNEQSI 527
RL +VK DP + FR+ S+
Sbjct: 497 RLQKVKARWDPRDVFRHALSV 517
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/464 (22%), Positives = 183/464 (39%), Gaps = 60/464 (12%)
Query: 77 KPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIR 136
+P I + ++R + NGL++ VRS GH+ G Y + +++DL + SI
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 137 VDIDNESAWVESGAILGELYHKIAEKSKLYGFPA--GSCXXXXXXXXXXXXXXXXIFRKY 194
+D A + G I G+L + A+ +G A G + KY
Sbjct: 96 IDTAGSRARIGGGVISGDLVKEAAK----FGLAAVTGMHPKVGFCGLALNGGVGFLTPKY 151
Query: 195 GLAADNIIDAKIVDVNGKIL-TRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVT 253
GLA+DNI+ A +V G ++ +LFWA+R G G +FGV+ +V++ +P+ +
Sbjct: 152 GLASDNILGATLVTATGDVIYCSDDERPELFWAVR-GAGPNFGVVTEVEVQLYELPRKML 210
Query: 254 VFNVRYTLEQGA-SKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSL 312
+ + + LL + +E+ + I+ + V ++ S TV V
Sbjct: 211 AGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSV----TVCVG---- 262
Query: 313 YLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQS-----VLYFAGFSTKDSL-NVLLDRS 366
+LGG++ + + +L + ++ ++S L S +D + N+ +DR
Sbjct: 263 HLGGLD----IAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDRE 318
Query: 367 TQYKG--FLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFP 424
F +A + L K VSE G ++ +E P+G P
Sbjct: 319 IAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEG-------MPFGNPKRT--------P 363
Query: 425 HRKGNIYAIQYLTNWD-EEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNN 483
R + + L W +EK+ R L + LN
Sbjct: 364 ARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLN---------- 413
Query: 484 NAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSI 527
N+S A + Y + RL VK DP+N FR+ +I
Sbjct: 414 ---NNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNI 454
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 107/476 (22%), Positives = 188/476 (39%), Gaps = 68/476 (14%)
Query: 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRV 137
P I P I AA++C G+Q+ + GH Y + + L+++L + + V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 138 DIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGLA 197
D DN A ++ GA LG ++ ++ G+C +GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGNR-ALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 198 ADNIIDAKIVDVNGKIL-TRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFN 256
D +I A +V + I+ ++ DLFWA+RGGGG F ++ ++ P+ +T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 257 VRYTLEQ----GASKLLQKW-QNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGS 311
V T + K LQ W QN L LE+ + + G+
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRE-----LSMRLEINANALNWEGN---------- 264
Query: 312 LYLGGVEKLVSLLQESFPQLGLMR--ENCTEMTW---IQSVLYFAGFSTKDSLNVLLDRS 366
+ G + L +LQ + G E W I + LY A LN+ +
Sbjct: 265 -FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA------DLNITYNYD 317
Query: 367 TQYKGFLKAKSDYLTKP-VSETGLEGL--YRILLEEEAP----VLILTPYGGR---MSEI 416
+ A S LT P +S+ ++ Y+ P + +GG+ ++ +
Sbjct: 318 VHE--YFYANS--LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAV 373
Query: 417 SDSEIAFPHRKGNIYAIQYLTN-WDEEDETEKHISS----MRRLYKYMKPYVSKAPRAAY 471
S+ E A+ HR ++ Q+ + +D E+ T + S M+ ++ + + + Y
Sbjct: 374 SNDETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKY 432
Query: 472 LNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSI 527
NY D L + AQ W + N ++L +K DP++ F N S+
Sbjct: 433 FNYADTTLTKEE-------AQKLYW-----RGNLEKLQAIKAKYDPEDVFGNVVSV 476
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/476 (22%), Positives = 187/476 (39%), Gaps = 68/476 (14%)
Query: 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRV 137
P I P I AA++C G+Q+ + GH Y + + L+++L + + V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 138 DIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGLA 197
D DN A ++ GA LG ++ ++ G+ +GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGNR-ALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 198 ADNIIDAKIVDVNGKIL-TRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFN 256
D +I A +V + I+ ++ DLFWA+RGGGG F ++ ++ P+ +T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 257 VRYTLEQ----GASKLLQKW-QNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGS 311
V T + K LQ W QN L LE+ + + G+
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRE-----LSMRLEINANALNWEGN---------- 264
Query: 312 LYLGGVEKLVSLLQESFPQLGLMR--ENCTEMTW---IQSVLYFAGFSTKDSLNVLLDRS 366
+ G + L +LQ + G E W I + LY A LN+ +
Sbjct: 265 -FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA------DLNITYNYD 317
Query: 367 TQYKGFLKAKSDYLTKP-VSETGLEGL--YRILLEEEAP----VLILTPYGGR---MSEI 416
+ A S LT P +S+ ++ Y+ P + +GG+ ++ +
Sbjct: 318 VHE--YFYANS--LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAV 373
Query: 417 SDSEIAFPHRKGNIYAIQYLTN-WDEEDETEKHISS----MRRLYKYMKPYVSKAPRAAY 471
S+ E A+ HR ++ Q+ + +D E+ T + S M+ ++ + + + Y
Sbjct: 374 SNDETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKY 432
Query: 472 LNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSI 527
NY D L + AQ W + N ++L +K DP++ F N S+
Sbjct: 433 FNYADTTLTKEE-------AQKLYW-----RGNLEKLQAIKAKYDPEDVFGNVVSV 476
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 125 LIIDLFNLRSIR-VDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXX 183
++I L IR +D + + VE+GAIL + K AE +L+ G+
Sbjct: 98 VVISLKRXDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLS 157
Query: 184 XXXXXXIFRKYGLAADNIIDAKIVDVNGKI------LTRKSMGEDLFWAIRGGGGASFGV 237
YGLA D + ++V +G++ L + + G DL G G + G+
Sbjct: 158 TNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-TLGI 216
Query: 238 IFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVA 276
I + +K+ P P+ V V A KLL Q A
Sbjct: 217 ITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEA 255
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 18/208 (8%)
Query: 65 IRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCS-KQNGLQVRVRSAGHDYEGLSYVADVP 123
I F + +KP ++ P I A++ + + + L V R GH G +
Sbjct: 49 IAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXAEG-- 106
Query: 124 FLIIDLFNLRSIRVDID-----NESAWVESGAILGELYHKIAEKS-KLYGFPAGSCXXXX 177
L++D ++ + +A+V+ G L+ + ++ YG S
Sbjct: 107 GLVVDXSTTAENHFEVGYLSGGDATAFVDVSG--GALWEDVLKRCVSEYGLAPRSWTDYL 164
Query: 178 XXXXXXXXXXXXI----FRKYGLAADNIIDAKIVDVNGKILTRKSM-GEDLFWAIRGGGG 232
+ FR YG N+ + +V NG ++T + +LF+++ GG G
Sbjct: 165 GLTVGGTLSNAGVSGQAFR-YGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLG 223
Query: 233 ASFGVIFSWKVKIVPVPQTVTVFNVRYT 260
FG+I +V + P P V V YT
Sbjct: 224 -QFGIITRARVLLQPAPDXVRWIRVVYT 250
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 193 KYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQT 251
++G N+++ ++ +G+++T K + DLF A+ GG G FGVI ++ + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAPAR 230
Query: 252 VTVFNVRYT 260
+ YT
Sbjct: 231 ARWVRLVYT 239
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 193 KYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQT 251
++G N+++ ++ +G+++T K + DLF A+ GG G FGVI ++ + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAPAR 230
Query: 252 VTVFNVRYT 260
+ YT
Sbjct: 231 ARWVRLVYT 239
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 193 KYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQT 251
++G N+++ ++ +G+++T K + DLF A+ GG G FGVI ++ + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAPAR 230
Query: 252 VTVFNVRYT 260
+ YT
Sbjct: 231 ARWVRLVYT 239
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 193 KYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQT 251
++G N+++ ++ +G+++T K + DLF A+ GG G FGVI ++ + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAPAR 230
Query: 252 VTVFNVRYT 260
+ YT
Sbjct: 231 ARWVRLVYT 239
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 193 KYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQT 251
++G N+++ ++ +G+++T K + DLF A+ GG G FGVI ++ + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAPAR 230
Query: 252 VTVFNVRYT 260
+ YT
Sbjct: 231 ARWVRLVYT 239
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 71 LNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF----LI 126
+ N+ P +T + V +Q ++ ++ + + S G ++ Y + P +I
Sbjct: 50 VENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVI 106
Query: 127 IDLFNL-RSIRVDIDNESAWVESGAILGELYHKIAEKS 163
+DL + + I++D + A VE G G++Y I E +
Sbjct: 107 LDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 71 LNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPF----LI 126
+ N+ P +T + V +Q ++ ++ + + S G ++ Y + P +I
Sbjct: 51 VENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVI 107
Query: 127 IDLFNL-RSIRVDIDNESAWVESGAILGELYHKIAEKS 163
+DL + + I++D + A VE G G++Y I E +
Sbjct: 108 LDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 193 KYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQT 251
++G N+++ ++ +G+++T K + DLF A+ GG G FGVI ++ + P P
Sbjct: 190 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAPAR 248
Query: 252 VTVFNVRYT 260
YT
Sbjct: 249 ARWVRFVYT 257
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 195 GLAADNIIDAKIVDVNGKI--LTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTV 252
G +++ +++ NG++ LT DLFWA GG G + G+I +++ P
Sbjct: 82 GSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLT-GIILRATIEMTPT---- 136
Query: 253 TVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSA 299
Y + G +V LDE I H+ A+ T SSA
Sbjct: 137 ---ETAYFIADG---------DVTGSLDETIAFHSDGSEANYTYSSA 171
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 195 GLAADNIIDAKIVDVNGKI--LTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTV 252
G +++ +++ NG++ LT DLFWA GG G + G+I +++ P
Sbjct: 147 GSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLT-GIILRATIEMTPT---- 201
Query: 253 TVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSA 299
Y + G +V LDE I H+ A+ T SSA
Sbjct: 202 ---ETAYFIADG---------DVTGSLDETIAFHSDGSEANYTYSSA 236
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 206 IVDVNGKILTRKSMGED--LFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQ 263
++ +G+I GED LFWA GG G + G+I +++ P + Y +
Sbjct: 171 LLTADGEIRHLTPTGEDAELFWATVGGNGLT-GIIMRATIEMTPT-------STAYFIAD 222
Query: 264 GASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSA 299
G +V LDE I LH+ A T SSA
Sbjct: 223 G---------DVTASLDETIALHSDGSEARYTYSSA 249
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
Length = 268
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 284 FLHAV-LEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQES--------FPQLGLM 334
FLH + LE SA + +L + ++K ++L E FP+L +
Sbjct: 116 FLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKL 175
Query: 335 RENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYR 394
E+ E I S GF T DSL L + L A + +SE L +
Sbjct: 176 IEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRM 235
Query: 395 I 395
I
Sbjct: 236 I 236
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|E Chain E, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|A Chain A, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|B Chain B, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|K Chain K, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 388
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 284 FLHAV-LEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQES--------FPQLGLM 334
FLH + LE SA + +L + ++K ++L E FP+L +
Sbjct: 116 FLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKL 175
Query: 335 RENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYR 394
E+ E I S GF T DSL L + L A + +SE L +
Sbjct: 176 IEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRM 235
Query: 395 I 395
I
Sbjct: 236 I 236
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1S2T|A Chain A, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2T|B Chain B, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2V|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|C Chain C, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|D Chain D, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2W|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase In High
Ionic Strength
Length = 295
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 330 QLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGL 389
QLG+ N E +W Q V S + +LLD T Y F A+ L + + + G+
Sbjct: 53 QLGVRDSN--EASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARR--LVRKLEDRGV 108
Query: 390 EGLYRILLEEEAPVLILTPYGGRMSEISDSE 420
G LE++ + + GR ++D E
Sbjct: 109 AG---ACLEDKLFPKTNSLHDGRAQPLADIE 136
>pdb|1S2U|A Chain A, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
pdb|1S2U|B Chain B, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
Length = 295
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 330 QLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGL 389
QLG+ N E +W Q V S + +LLD T Y F A+ L + + + G+
Sbjct: 53 QLGVRASN--EASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARR--LVRKLEDRGV 108
Query: 390 EGLYRILLEEEAPVLILTPYGGRMSEISDSE 420
G LE++ + + GR ++D E
Sbjct: 109 AG---ACLEDKLFPKTNSLHDGRAQPLADIE 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,714,375
Number of Sequences: 62578
Number of extensions: 597947
Number of successful extensions: 1349
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 52
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)