Query 037058
Match_columns 531
No_of_seqs 267 out of 2163
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 4.2E-39 9.1E-44 342.4 42.9 206 46-263 40-256 (525)
2 PLN02805 D-lactate dehydrogena 100.0 1.4E-34 3.1E-39 312.2 27.9 192 76-271 132-330 (555)
3 TIGR01678 FAD_lactone_ox sugar 100.0 1.6E-33 3.4E-38 297.7 33.1 196 70-277 7-205 (438)
4 PRK11230 glycolate oxidase sub 100.0 3.7E-33 8E-38 299.7 29.7 195 75-271 53-253 (499)
5 TIGR01677 pln_FAD_oxido plant- 100.0 7.6E-32 1.6E-36 290.5 33.4 180 70-252 24-215 (557)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 4.3E-32 9.3E-37 286.5 30.7 194 70-277 4-199 (419)
7 COG0277 GlcD FAD/FMN-containin 100.0 4.9E-32 1.1E-36 291.0 30.8 186 74-262 28-220 (459)
8 TIGR00387 glcD glycolate oxida 100.0 1.5E-31 3.2E-36 282.6 27.1 190 81-272 1-197 (413)
9 TIGR01676 GLDHase galactonolac 100.0 3.5E-32 7.5E-37 289.2 21.8 196 69-276 53-251 (541)
10 KOG1231 Proteins containing th 100.0 1.4E-30 3E-35 261.5 23.5 228 6-250 5-240 (505)
11 PRK11282 glcE glycolate oxidas 100.0 1.4E-29 3.1E-34 258.8 17.9 170 86-260 3-181 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 2.3E-28 5E-33 262.1 22.1 177 69-252 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.1E-27 8.8E-32 211.7 13.1 136 78-215 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 1.8E-24 3.9E-29 218.5 13.6 163 75-249 28-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 9.4E-24 2E-28 221.5 17.4 195 75-273 36-290 (564)
16 KOG1232 Proteins containing th 99.9 5.1E-22 1.1E-26 195.3 19.8 187 66-254 78-271 (511)
17 KOG4730 D-arabinono-1, 4-lacto 99.9 1.5E-22 3.2E-27 204.0 14.0 182 70-257 42-226 (518)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 1.3E-21 2.7E-26 197.6 13.9 163 74-248 33-197 (305)
19 TIGR00179 murB UDP-N-acetyleno 99.9 1.2E-21 2.6E-26 196.1 13.6 163 74-247 9-174 (284)
20 PRK14652 UDP-N-acetylenolpyruv 99.9 1.6E-21 3.5E-26 196.3 14.1 163 74-249 32-196 (302)
21 PRK13906 murB UDP-N-acetylenol 99.9 2.9E-21 6.2E-26 195.0 14.1 161 75-247 34-196 (307)
22 PRK13903 murB UDP-N-acetylenol 99.8 2.9E-20 6.4E-25 190.4 16.6 165 74-249 29-197 (363)
23 KOG1233 Alkyl-dihydroxyacetone 99.8 2.3E-19 5.1E-24 176.9 16.1 187 70-261 153-352 (613)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 4.1E-19 8.8E-24 178.6 17.4 166 74-249 17-193 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 2E-17 4.3E-22 165.7 13.8 161 75-249 31-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 1.4E-16 3E-21 156.6 14.3 165 74-248 17-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 4E-16 8.6E-21 155.9 13.3 164 74-249 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 4.6E-16 1E-20 157.7 12.3 163 74-248 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.6 2.9E-15 6.2E-20 151.7 13.5 166 74-249 26-237 (354)
30 PF08031 BBE: Berberine and be 99.6 3.8E-16 8.1E-21 112.4 3.9 47 470-528 1-47 (47)
31 KOG1262 FAD-binding protein DI 99.5 4.8E-14 1E-18 139.9 9.4 127 125-253 104-233 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.5 2.9E-13 6.2E-18 133.6 12.4 150 76-248 19-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.2 1.2E-10 2.6E-15 114.0 10.1 144 75-249 16-160 (257)
34 PRK09971 xanthine dehydrogenas 95.4 0.11 2.4E-06 52.5 10.3 152 80-247 6-175 (291)
35 PF00941 FAD_binding_5: FAD bi 94.9 0.037 8.1E-07 51.4 4.9 103 78-185 2-115 (171)
36 PRK09799 putative oxidoreducta 94.6 0.11 2.3E-06 51.7 7.6 140 80-244 4-155 (258)
37 TIGR03312 Se_sel_red_FAD proba 93.5 0.27 5.8E-06 48.8 7.8 139 81-244 4-154 (257)
38 TIGR02963 xanthine_xdhA xanthi 92.3 0.36 7.8E-06 52.1 7.4 152 78-245 192-358 (467)
39 PF09265 Cytokin-bind: Cytokin 91.5 0.46 1E-05 47.4 6.5 34 494-528 248-281 (281)
40 TIGR03195 4hydrxCoA_B 4-hydrox 91.1 0.44 9.5E-06 48.8 6.1 101 80-185 6-117 (321)
41 PLN00107 FAD-dependent oxidore 90.9 0.98 2.1E-05 44.3 7.9 22 503-524 176-197 (257)
42 TIGR03199 pucC xanthine dehydr 88.1 0.74 1.6E-05 45.8 5.0 97 84-185 1-109 (264)
43 PF04030 ALO: D-arabinono-1,4- 87.4 1.5 3.2E-05 43.5 6.6 27 496-524 228-254 (259)
44 PF02913 FAD-oxidase_C: FAD li 86.8 1.1 2.3E-05 43.4 5.2 76 430-522 168-244 (248)
45 PLN02906 xanthine dehydrogenas 82.7 2.1 4.6E-05 52.2 6.2 79 79-161 229-309 (1319)
46 PLN00192 aldehyde oxidase 81.5 3.9 8.4E-05 50.1 7.7 107 78-185 233-352 (1344)
47 TIGR02969 mam_aldehyde_ox alde 78.8 5 0.00011 49.1 7.5 78 79-160 237-316 (1330)
48 COG1319 CoxM Aerobic-type carb 74.9 10 0.00022 38.2 7.2 75 78-156 3-80 (284)
49 COG4630 XdhA Xanthine dehydrog 61.6 15 0.00031 38.1 5.2 140 77-228 202-352 (493)
50 COG1519 KdtA 3-deoxy-D-manno-o 47.4 1.1E+02 0.0023 32.6 8.9 34 77-110 260-293 (419)
51 COG4981 Enoyl reductase domain 44.2 38 0.00082 36.8 5.1 68 43-116 122-197 (717)
52 KOG4730 D-arabinono-1, 4-lacto 42.1 15 0.00033 38.9 1.8 21 503-523 485-505 (518)
53 PF02601 Exonuc_VII_L: Exonucl 40.4 36 0.00078 34.7 4.3 58 47-111 18-87 (319)
54 PRK11282 glcE glycolate oxidas 38.5 20 0.00043 37.3 2.1 22 502-523 323-345 (352)
55 COG2144 Selenophosphate synthe 38.4 1.2E+02 0.0027 30.5 7.3 91 5-108 198-289 (324)
56 COG0351 ThiD Hydroxymethylpyri 36.8 95 0.0021 30.9 6.4 91 46-163 132-225 (263)
57 KOG3282 Uncharacterized conser 32.9 58 0.0013 30.3 3.9 36 69-106 118-153 (190)
58 PRK00286 xseA exodeoxyribonucl 32.7 48 0.001 35.5 4.0 58 47-111 139-204 (438)
59 PRK14758 hypothetical protein; 32.3 40 0.00087 20.8 1.8 15 5-19 6-20 (27)
60 COG4359 Uncharacterized conser 30.5 52 0.0011 30.9 3.1 26 90-115 78-103 (220)
61 cd07033 TPP_PYR_DXS_TK_like Py 29.0 79 0.0017 28.5 4.2 30 79-108 125-154 (156)
62 TIGR00178 monomer_idh isocitra 28.1 2.7E+02 0.0058 31.0 8.3 128 87-228 312-460 (741)
63 PF02779 Transket_pyr: Transke 26.5 88 0.0019 28.8 4.1 32 79-110 139-172 (178)
64 cd02429 PTH2_like Peptidyl-tRN 26.1 1.2E+02 0.0026 26.2 4.5 32 76-107 54-85 (116)
65 COG1154 Dxs Deoxyxylulose-5-ph 26.0 4.6E+02 0.01 29.3 9.8 83 76-163 439-527 (627)
66 PRK04322 peptidyl-tRNA hydrola 23.2 1.7E+02 0.0037 25.1 4.9 38 75-112 45-83 (113)
67 PF04472 DUF552: Protein of un 22.0 1.3E+02 0.0029 23.3 3.7 33 80-134 2-34 (73)
68 TIGR00237 xseA exodeoxyribonuc 21.8 60 0.0013 34.8 2.3 63 47-111 133-199 (432)
69 TIGR01676 GLDHase galactonolac 21.7 53 0.0012 36.2 1.9 20 505-524 515-534 (541)
70 cd02430 PTH2 Peptidyl-tRNA hyd 21.0 1.6E+02 0.0034 25.4 4.2 41 69-111 43-84 (115)
71 PLN02465 L-galactono-1,4-lacto 20.9 57 0.0012 36.3 1.9 27 495-524 538-564 (573)
72 KOG2499 Beta-N-acetylhexosamin 20.4 81 0.0018 33.9 2.7 28 85-112 247-276 (542)
73 cd02407 PTH2_family Peptidyl-t 20.1 1.7E+02 0.0037 25.1 4.3 38 75-112 47-85 (115)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=4.2e-39 Score=342.41 Aligned_cols=206 Identities=23% Similarity=0.346 Sum_probs=178.2
Q ss_pred CceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCceEEEcCCcCCCCCccccCCC
Q 037058 46 SNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSK--QNGLQVRVRSAGHDYEGLSYVADVP 123 (531)
Q Consensus 46 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~--~~~~~~~v~ggGh~~~g~~~~~~~~ 123 (531)
.+.+.+ +..+++.+. ..|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+
T Consensus 40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~-- 110 (525)
T PLN02441 40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG-- 110 (525)
T ss_pred CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence 344443 555665543 2488877889999999999999999999997 67999999999999999887754
Q ss_pred eEEEEecCCcc-------EEEeCCCCeEEEeCCCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCccccC
Q 037058 124 FLIIDLFNLRS-------IRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIFRKYG 195 (531)
Q Consensus 124 givIdl~~l~~-------i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s~~~G 195 (531)
|++|||++||+ +++|.+..+|+|++|++|.+|.+++.++| +..+. +....++|||.+++||+|..+.+||
T Consensus 111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG 188 (525)
T PLN02441 111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG 188 (525)
T ss_pred eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence 99999999999 37888899999999999999999999998 44333 5666889999999999999999999
Q ss_pred ccccceeeEEEEeeCceEEE-ecCCCCcceeeeccccCcceEEEEEEEEEeeecCceEEEEEEEecchh
Q 037058 196 LAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQ 263 (531)
Q Consensus 196 ~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~ 263 (531)
..+|+|+++|||++||++++ ++++|+|||||+||| .|+|||||++|+|++|.|+...++.+.|..-+
T Consensus 189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~ 256 (525)
T PLN02441 189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFS 256 (525)
T ss_pred cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHH
Confidence 99999999999999999999 778899999999998 47999999999999999997777777665433
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.4e-34 Score=312.21 Aligned_cols=192 Identities=19% Similarity=0.311 Sum_probs=169.0
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHH
Q 037058 76 LKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGE 154 (531)
Q Consensus 76 ~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~ 154 (531)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+...+ ++++|||++||+| ++|.++.+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999998877653 5999999999998 7999999999999999999
Q ss_pred HHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE--ec----CCCCcceeeec
Q 037058 155 LYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT--RK----SMGEDLFWAIR 228 (531)
Q Consensus 155 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~--~~----~~~~dL~~a~r 228 (531)
|+++|.++| +.++...++.++|||+++++++|..+.+||.++|+|+++|||++||++++ .. ..++||+|+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999998 55666666778999999999999999999999999999999999999996 21 25689999999
Q ss_pred cccCcceEEEEEEEEEeeecCceEEEEEEEecchhHHHHHHHH
Q 037058 229 GGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQK 271 (531)
Q Consensus 229 G~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 271 (531)
|+ .|+|||||+++||++|.|+......+.|+..+++.+++..
T Consensus 289 Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 289 GS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred cC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99 5799999999999999998777777777644434444433
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.6e-33 Score=297.71 Aligned_cols=196 Identities=22% Similarity=0.394 Sum_probs=170.5
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeC
Q 037058 70 FLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVES 148 (531)
Q Consensus 70 ~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~a 148 (531)
|+.+....|.+|+.|+|++||+++|++|++++++++++|+|||+.+.... + +++|||++||+| ++|.++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 88888889999999999999999999999999999999999999876543 2 899999999997 9999999999999
Q ss_pred CCcHHHHHHHHHhcCCceeec-CCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ecCCCCcceee
Q 037058 149 GAILGELYHKIAEKSKLYGFP-AGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWA 226 (531)
Q Consensus 149 G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a 226 (531)
|+++.+|.+.|.++| +.++ .|.++.++|||++++|++|. +.+||..+|+|+++++|++||++++ +.++++||||+
T Consensus 84 G~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a 160 (438)
T TIGR01678 84 GIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQA 160 (438)
T ss_pred CCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHH
Confidence 999999999999998 4555 58888999999999999997 6889999999999999999999999 77788999999
Q ss_pred eccccCcceEEEEEEEEEeeecCceEEEEEEEecchhHHHHHHHHHHHHhh
Q 037058 227 IRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAH 277 (531)
Q Consensus 227 ~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+|+. |+|||||++|||++|........ ... ...++++.|++...
T Consensus 161 ~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~~---~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 161 ARVSL-GCLGIIVTVTIQVVPQFHLQETS--FVS---TLKELLDNWDSHWK 205 (438)
T ss_pred HhcCC-CceEeeEEEEEEEEeccceEEEE--ecC---CHHHHHHHHHHHhh
Confidence 99984 79999999999999977643322 111 13456677766543
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=3.7e-33 Score=299.71 Aligned_cols=195 Identities=21% Similarity=0.332 Sum_probs=168.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHH
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILG 153 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~ 153 (531)
...|.+|++|+|++||+++|++|+++++|+++||+||++.|.+.+.. ++++|||++||+| ++|+++++|+||||+++.
T Consensus 53 ~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~~ 131 (499)
T PRK11230 53 RTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRNL 131 (499)
T ss_pred CCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccHH
Confidence 46899999999999999999999999999999999999987766543 4899999999997 999999999999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ec----CCCCcceeeec
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RK----SMGEDLFWAIR 228 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~----~~~~dL~~a~r 228 (531)
+|.++|.++|+.+...++....++|||++++++.|+.+.+||...|+|+++|||++||++++ .. ..++||+|+++
T Consensus 132 ~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~ 211 (499)
T PRK11230 132 AISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFT 211 (499)
T ss_pred HHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhc
Confidence 99999999995433334556678999999999999999999999999999999999999998 22 34799999999
Q ss_pred cccCcceEEEEEEEEEeeecCceEEEEEEEecchhHHHHHHHH
Q 037058 229 GGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQK 271 (531)
Q Consensus 229 G~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 271 (531)
|+ .|+|||||++|||++|.|+....+.+.|...+.+.+++..
T Consensus 212 Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 212 GS-EGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred cC-CCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 99 5799999999999999998776666666544434444433
No 5
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=7.6e-32 Score=290.48 Aligned_cols=180 Identities=20% Similarity=0.251 Sum_probs=159.7
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEc-CCcCCCCCccccC-CCeEEEEecCCcc-EEEeCCCCeEEE
Q 037058 70 FLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRS-AGHDYEGLSYVAD-VPFLIIDLFNLRS-IRVDIDNESAWV 146 (531)
Q Consensus 70 ~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~g-gGh~~~g~~~~~~-~~givIdl~~l~~-i~~d~~~~~v~v 146 (531)
|+++....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+.... +++++|||++||+ +++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 999999999999999999999999999999999999996 5999876554321 1369999999999 599999999999
Q ss_pred eCCCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCc-cccCccccceeeEEEEeeCc------eEEE-ec
Q 037058 147 ESGAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIF-RKYGLAADNIIDAKIVDVNG------KILT-RK 217 (531)
Q Consensus 147 ~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s-~~~G~~~D~v~~~~vV~~~G------~i~~-~~ 217 (531)
+||+++.+|.+.|.++| +.++. +....++|||.+++|+||... +.||..+|+|++++||++|| ++++ +.
T Consensus 104 ~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~ 181 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSE 181 (557)
T ss_pred CCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCC
Confidence 99999999999999998 55555 455678999999999999876 58899999999999999998 7887 77
Q ss_pred CCCCcceeeeccccCcceEEEEEEEEEeeecCceE
Q 037058 218 SMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTV 252 (531)
Q Consensus 218 ~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~ 252 (531)
.+++|||||+|||+ |+|||||++|||++|.+...
T Consensus 182 ~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 182 GDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 78899999999994 79999999999999987633
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.3e-32 Score=286.46 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=163.0
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeC
Q 037058 70 FLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVES 148 (531)
Q Consensus 70 ~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~a 148 (531)
|+......|.+|++|+|++||+++|+.|++ +++++|+|||+.+.... + +++|||++||+| ++|+++++|+|+|
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888878899999999999999999999974 79999999999876542 3 799999999997 9999999999999
Q ss_pred CCcHHHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ecCCCCcceeee
Q 037058 149 GAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAI 227 (531)
Q Consensus 149 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a~ 227 (531)
|+++.+|.+.|.++|+.++. .|....++|||.+++|++|.+ ..||..+|+|++++||++||++++ ++.+++|||||+
T Consensus 78 G~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~ 155 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAA 155 (419)
T ss_pred CCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHH
Confidence 99999999999999954322 255566889999999999975 579999999999999999999999 777899999999
Q ss_pred ccccCcceEEEEEEEEEeeecCceEEEEEEEecchhHHHHHHHHHHHHhh
Q 037058 228 RGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAH 277 (531)
Q Consensus 228 rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (531)
|||+ |+|||||++|||++|......... ..+ ..++++.+.++..
T Consensus 156 ~g~~-G~lGVIt~vtl~~~p~~~~~~~~~-~~~----~~~~~~~~~~~~~ 199 (419)
T TIGR01679 156 RVSL-GALGVISQVTLQTVALFRLRRRDW-RRP----LAQTLERLDEFVD 199 (419)
T ss_pred HhCC-CceEEEEEEEEEeecceEeEEEEE-ecC----HHHHHHHHHHHHh
Confidence 9994 799999999999999876433221 112 2344555555544
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.9e-32 Score=291.05 Aligned_cols=186 Identities=25% Similarity=0.390 Sum_probs=165.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAIL 152 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~ 152 (531)
....|.+|+.|+|++||+++|++|+++++||++||+||++.|.+.+. . +++|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34689999999999999999999999999999999999999988776 3 899999999998 89999999999999999
Q ss_pred HHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE--e----cCCCCcceee
Q 037058 153 GELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT--R----KSMGEDLFWA 226 (531)
Q Consensus 153 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~--~----~~~~~dL~~a 226 (531)
.+|.++|.++|+.+++.+++...++|||++++|++|..+.+||.++|+|+++++|++||++++ . +.+++||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999996554445555589999999999999999999999999999999999999998 2 2456899999
Q ss_pred eccccCcceEEEEEEEEEeeecCceEEEEEEEecch
Q 037058 227 IRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLE 262 (531)
Q Consensus 227 ~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~ 262 (531)
..|+ .|+|||||++|+|++|.|+........+...
T Consensus 186 ~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~ 220 (459)
T COG0277 186 FVGS-EGTLGIITEATLKLLPLPETKATAVAGFPSI 220 (459)
T ss_pred cccC-CccceEEEEEEEEeccCCchheEEEEeCCCH
Confidence 9988 5799999999999999988666555555443
No 8
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.5e-31 Score=282.56 Aligned_cols=190 Identities=20% Similarity=0.321 Sum_probs=163.1
Q ss_pred EEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHHHH
Q 037058 81 IITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELYHKI 159 (531)
Q Consensus 81 vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l 159 (531)
||+|+|++||+++|++|+++++|+.+||+|||+.|.+.+.+ ++++|||++||+| ++|+++++++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987766553 5899999999998 999999999999999999999999
Q ss_pred HhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-e-----cCCCCcceeeeccccCc
Q 037058 160 AEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-R-----KSMGEDLFWAIRGGGGA 233 (531)
Q Consensus 160 ~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~-----~~~~~dL~~a~rG~~~~ 233 (531)
.++|+.+++.++....++|||++.+++.|..+.+||.++|+|++++||++||++++ . ...++||+|.+.|+ .|
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs-~G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS-EG 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-Cc
Confidence 99995443334555678899999999999999999999999999999999999997 2 23578999999998 57
Q ss_pred ceEEEEEEEEEeeecCceEEEEEEEecchhHHHHHHHHH
Q 037058 234 SFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKW 272 (531)
Q Consensus 234 ~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (531)
+|||||+++||++|.|+....+.+.|...+.+.+++..+
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999997666666665444344444333
No 9
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.5e-32 Score=289.21 Aligned_cols=196 Identities=16% Similarity=0.254 Sum_probs=170.6
Q ss_pred cccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEe
Q 037058 69 RFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVE 147 (531)
Q Consensus 69 r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~ 147 (531)
+|+++....|..+++|+|++||+++|+.|++++.+|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 3999999999999999999999999999999999999999999999877754 457999999997 999999999999
Q ss_pred CCCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ecCCCCccee
Q 037058 148 SGAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFW 225 (531)
Q Consensus 148 aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 225 (531)
||+++.+|.+.|.++| +.++. |.+..++|||++++|+||... +||..+|+|+++++|++||++++ +..+++||||
T Consensus 130 AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg~-~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 206 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFF 206 (541)
T ss_pred CCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCCC-CCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHH
Confidence 9999999999999998 55554 888899999999999999965 69999999999999999999998 7778999999
Q ss_pred eeccccCcceEEEEEEEEEeeecCceEEEEEEEecchhHHHHHHHHHHHHh
Q 037058 226 AIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVA 276 (531)
Q Consensus 226 a~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (531)
|.|||+ |+|||||++|||++|.+.... .....+ ..++++.+.++.
T Consensus 207 Aargsl-G~LGVItevTLr~~Pa~~l~~-~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 207 LARCGL-GGLGVVAEVTLQCVERQELVE-HTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHhcCC-CceEeEEEEEEEEEeccceeE-EEEecC----HHHHHHHHHHHH
Confidence 999995 799999999999999987432 222223 234555565543
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=1.4e-30 Score=261.55 Aligned_cols=228 Identities=22% Similarity=0.355 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHhhcccccCCCcccCHHhhhhcCCCCCCCCCceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecC
Q 037058 6 FELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPS 85 (531)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~ 85 (531)
.++.++++.-|+....+.--...++++.-|....+..... ..+....+- + -|....+..|.+|..|+
T Consensus 5 ~~lflI~~l~~i~~~~p~~~ks~~~~~~~l~~~~~~~~~~-------~~~~~a~~s-~-----dFg~~~~~~P~aVL~P~ 71 (505)
T KOG1231|consen 5 LRLFLITLLSIIKLITPVITKSSESLKKILGNSLEGTLES-------DPSSVAHAS-T-----DFGNRTQLPPLAVLFPS 71 (505)
T ss_pred HHHHHHHHHHHHhcccchhhccCcchhhhcCccccceeec-------cchhhhhhh-h-----hccccCCCCCeeEEcCC
Confidence 4453333333444444554566777777777544322111 111122211 1 13334457999999999
Q ss_pred CHHHHHHHHHHHHhC--CCceEEEcCCcCCCCCccccCCCeEEEEec---CCccE-EEeCCCCeEEEeCCCcHHHHHHHH
Q 037058 86 HVSHIQAAIRCSKQN--GLQVRVRSAGHDYEGLSYVADVPFLIIDLF---NLRSI-RVDIDNESAWVESGAILGELYHKI 159 (531)
Q Consensus 86 t~~dv~~~v~~a~~~--~~~~~v~ggGh~~~g~~~~~~~~givIdl~---~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l 159 (531)
|+|||++++|.|... ++||++||+|||..|.+.... +|+||.|+ .|+++ .+..+...|.|.||..|-+|.+++
T Consensus 72 S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t 150 (505)
T KOG1231|consen 72 SVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYT 150 (505)
T ss_pred CHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHH
Confidence 999999999999999 999999999999999888754 48777774 35555 556667999999999999999999
Q ss_pred HhcCCceeecCC-CCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ecCCCCcceeeeccccCcceEE
Q 037058 160 AEKSKLYGFPAG-SCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGV 237 (531)
Q Consensus 160 ~~~g~~l~~~~g-~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a~rG~~~~~~Gi 237 (531)
.++| |....+ .....+|||.++.+|+|.++.+||...+||++++||+++|++++ ++..|++||+++.||. |+|||
T Consensus 151 ~e~G--L~p~swtDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGgl-GqfGI 227 (505)
T KOG1231|consen 151 LEYG--LSPFSWTDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGL-GQFGI 227 (505)
T ss_pred HHcC--CCccCcCCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccC-cceee
Confidence 9998 422121 12237899999999999999999999999999999999999999 8889999999999995 79999
Q ss_pred EEEEEEEeeecCc
Q 037058 238 IFSWKVKIVPVPQ 250 (531)
Q Consensus 238 vt~~~~k~~p~~~ 250 (531)
||+++++++|+|.
T Consensus 228 ITrArI~le~aP~ 240 (505)
T KOG1231|consen 228 ITRARIKLEPAPK 240 (505)
T ss_pred EEEEEEEeccCCc
Confidence 9999999999994
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=258.76 Aligned_cols=170 Identities=20% Similarity=0.309 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHhCCCceEEEcCCc-CCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHHHHHhcC
Q 037058 86 HVSHIQAAIRCSKQNGLQVRVRSAGH-DYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELYHKIAEKS 163 (531)
Q Consensus 86 t~~dv~~~v~~a~~~~~~~~v~ggGh-~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g 163 (531)
.++||+++|++|+++++|+.++|||| ++.+.. .+ +++|||++||+| ++|+++.+|+|+||+++.+|.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 455552 23 679999999997 9999999999999999999999999999
Q ss_pred CceeecCC-CCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-e-----cCCCCcceeeeccccCcceE
Q 037058 164 KLYGFPAG-SCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-R-----KSMGEDLFWAIRGGGGASFG 236 (531)
Q Consensus 164 ~~l~~~~g-~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~-----~~~~~dL~~a~rG~~~~~~G 236 (531)
+.+++.++ .+..++|||++++|++|+.+.+||..+|+|+++++|++||++++ . ...++||||+++|+ .|+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cchhh
Confidence 65555443 44468999999999999999999999999999999999999997 2 23578999999999 57999
Q ss_pred EEEEEEEEeeecCceEEEEEEEec
Q 037058 237 VIFSWKVKIVPVPQTVTVFNVRYT 260 (531)
Q Consensus 237 ivt~~~~k~~p~~~~~~~~~~~~~ 260 (531)
|||++|||++|.|+....+.+.++
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC
Confidence 999999999999986555555443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=2.3e-28 Score=262.09 Aligned_cols=177 Identities=17% Similarity=0.302 Sum_probs=160.0
Q ss_pred cccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEe
Q 037058 69 RFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVE 147 (531)
Q Consensus 69 r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~ 147 (531)
+|+++....|.+++.|+|++||+++|++|+++++||+++|+|||+.+..... +.+|||++||+| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4999999999999999999999999999999999999999999998877654 356899999997 999999999999
Q ss_pred CCCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ecCCCCccee
Q 037058 148 SGAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFW 225 (531)
Q Consensus 148 aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 225 (531)
||+++.+|.+.|.++| +.++. |.....+|||++.+|+||... .+|..+|+|+++++|+++|++++ +.++++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999999 45554 556678999999999999875 58999999999999999999998 7777899999
Q ss_pred eeccccCcceEEEEEEEEEeeecCceE
Q 037058 226 AIRGGGGASFGVIFSWKVKIVPVPQTV 252 (531)
Q Consensus 226 a~rG~~~~~~Givt~~~~k~~p~~~~~ 252 (531)
+.|++. |.|||||++|||++|..+..
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCceE
Confidence 999985 69999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.1e-27 Score=211.74 Aligned_cols=136 Identities=32% Similarity=0.593 Sum_probs=124.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCcc-EEEeCCCCeEEEeCCCcHHHHH
Q 037058 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRS-IRVDIDNESAWVESGAILGELY 156 (531)
Q Consensus 78 p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~-i~~d~~~~~v~v~aG~~~~~l~ 156 (531)
|.+|++|+|++||+++|++|+++++|+.++|+||++.+.+... ++++|||++||+ +++|+++++++|+||+++.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999999776634 399999999999 5999999999999999999999
Q ss_pred HHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE
Q 037058 157 HKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT 215 (531)
Q Consensus 157 ~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~ 215 (531)
++|.++|..+.+.++.+..++|||++.+|++|..++.||..+|+|+++|+|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999984443446888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.8e-24 Score=218.52 Aligned_cols=163 Identities=22% Similarity=0.250 Sum_probs=138.2
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecC-CccEEEeCCCCeEEEeCCCcHH
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFN-LRSIRVDIDNESAWVESGAILG 153 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~-l~~i~~d~~~~~v~v~aG~~~~ 153 (531)
...|.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ +++|||++ |+.|++ ++.+++|+||+.|.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHH
Confidence 45799999999999999999999999999999999999876554444 89999998 998855 45789999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccC-ccccceeeEEEEeeCceEEEecCCCCcceeeeccccC
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYG-LAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGG 232 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 232 (531)
+|.+++.++|+ .|.+..++++| +.||+.+++++.|| .++|+|+++++|++||++++.. +.|++|+||++..
T Consensus 104 ~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~ 175 (298)
T PRK13905 104 KLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSAL 175 (298)
T ss_pred HHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccC
Confidence 99999999983 35555566666 45777777788888 6899999999999999999832 2499999999865
Q ss_pred c-ceEEEEEEEEEeeecC
Q 037058 233 A-SFGVIFSWKVKIVPVP 249 (531)
Q Consensus 233 ~-~~Givt~~~~k~~p~~ 249 (531)
+ .+||||+++||++|..
T Consensus 176 ~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 176 QEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 4 3799999999999964
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=9.4e-24 Score=221.48 Aligned_cols=195 Identities=13% Similarity=0.164 Sum_probs=160.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCC----CeEEEEecCCccE-EEeCCCCeEEEeCC
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADV----PFLIIDLFNLRSI-RVDIDNESAWVESG 149 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~----~givIdl~~l~~i-~~d~~~~~v~v~aG 149 (531)
...|.+||+|.|++||+++|++|+++++||++||||++..|.+.+..+ ++|||||++||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999998887642 3899999999998 788 5678999999
Q ss_pred CcHHHHHHHHHhcCCceeecCCC-CCCccccccccCCCCCCCccccCccccceeeEEEEeeCceE-------EE--e---
Q 037058 150 AILGELYHKIAEKSKLYGFPAGS-CSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKI-------LT--R--- 216 (531)
Q Consensus 150 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i-------~~--~--- 216 (531)
+++.+|.++|.++|+......|+ +-.++|||.++.++.|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999998432211123 3345788999999999999999999999999 999999999 33 1
Q ss_pred ------cCCCC----------------------------------cceeee--ccccCcceEEEEEEEEEeeecCceEEE
Q 037058 217 ------KSMGE----------------------------------DLFWAI--RGGGGASFGVIFSWKVKIVPVPQTVTV 254 (531)
Q Consensus 217 ------~~~~~----------------------------------dL~~a~--rG~~~~~~Givt~~~~k~~p~~~~~~~ 254 (531)
+..+. |+...+ -|+ .|.+||+ +++++++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceE
Confidence 11233 666666 777 5799999 999999999998888
Q ss_pred EEEEecchhHHHHHHHHHH
Q 037058 255 FNVRYTLEQGASKLLQKWQ 273 (531)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~ 273 (531)
|.+.++..+.+.++...+.
T Consensus 272 f~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred EEEeCCCHHHHHHHHHHHH
Confidence 8888876555555554443
No 16
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=5.1e-22 Score=195.34 Aligned_cols=187 Identities=20% Similarity=0.312 Sum_probs=170.8
Q ss_pred ccccccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeE
Q 037058 66 RNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESA 144 (531)
Q Consensus 66 ~n~r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v 144 (531)
+|.-|-.........|.+|.|+++|++++++|+++++.|++.||-+...|.|.+.- +-|||+|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 46668777777899999999999999999999999999999999999999998875 4899999999998 999999999
Q ss_pred EEeCCCcHHHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE------ecC
Q 037058 145 WVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT------RKS 218 (531)
Q Consensus 145 ~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~------~~~ 218 (531)
++++|+.+.++..+|+++|+.+++.-|.-.+|-|||.+++++.|..--+||...-+|+++|+|+++|+|++ ++.
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999997666777999999999999999999999999999999999999999999986 455
Q ss_pred CCCcceeeeccccCcceEEEEEEEEEeeecCceEEE
Q 037058 219 MGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTV 254 (531)
Q Consensus 219 ~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~~~ 254 (531)
.+.|+-....|+ .|++||||.+++-+.|.|+.+..
T Consensus 237 TgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecC-CceeeEEeeEEEeecCCCcceeE
Confidence 778999999999 57999999999999999986543
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.88 E-value=1.5e-22 Score=203.99 Aligned_cols=182 Identities=23% Similarity=0.322 Sum_probs=161.1
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeC
Q 037058 70 FLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVES 148 (531)
Q Consensus 70 ~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~a 148 (531)
|..+..++.+-|-+|+|++|+.++|+.|++++.++++.|.|||..+..+.+ |.+|+++.||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 555555678889999999999999999999999999999999999877754 699999999996 9999999999999
Q ss_pred CCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-ecCCCCcceee
Q 037058 149 GAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWA 226 (531)
Q Consensus 149 G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a 226 (531)
|+++.||.+++++.| +.++. |.....+|||++..|.||....-|+.....+....++.+||.++. +++..||+|.|
T Consensus 119 GirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred CcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 999999999999988 56664 778889999999999999988878877777777888889999887 77888999999
Q ss_pred eccccCcceEEEEEEEEEeeecCceEEEEEE
Q 037058 227 IRGGGGASFGVIFSWKVKIVPVPQTVTVFNV 257 (531)
Q Consensus 227 ~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~ 257 (531)
.+-+. |-+|||.++||++.|.-+....+.+
T Consensus 197 AkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 197 AKVSL-GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhcc-cceeEEEEEEEEEEecceeeeEEEE
Confidence 99996 6999999999999998876555544
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.3e-21 Score=197.56 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=132.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILG 153 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~ 153 (531)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ |++|+|++|++|+++ +.+++|+||+.+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 345799999999999999999999999999999999999875554444 899999889999876 4689999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccC-ccccceeeEEEEeeCceEEEecCCCCcceeeeccccC
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYG-LAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGG 232 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 232 (531)
+|.+++.++|+ .|....+|++|. .||+..++++.|| ...|.+.+++|+++||++++... .|+.|+||.+..
T Consensus 109 ~L~~~~~~~gl-----~Gle~~~giPGt-VGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~s~~ 180 (305)
T PRK12436 109 DVSRIALDHNL-----TGLEFACGIPGS-VGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRKSVF 180 (305)
T ss_pred HHHHHHHHcCC-----ccchhhcCCccc-hhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCCCcC
Confidence 99999999983 233333444443 3566677777788 56788999999999999998322 389999998743
Q ss_pred c-ceEEEEEEEEEeeec
Q 037058 233 A-SFGVIFSWKVKIVPV 248 (531)
Q Consensus 233 ~-~~Givt~~~~k~~p~ 248 (531)
. ...||++++||+.+.
T Consensus 181 ~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 181 ANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCEEEEEEEEEEcCC
Confidence 3 256999999999874
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.87 E-value=1.2e-21 Score=196.07 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=141.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILG 153 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~ 153 (531)
....|.+++.|+|++||++++++|+++++|+.++|||||....+.+.+ +++|++++|+.+.+++ +.+++|+||+.|.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 345799999999999999999999999999999999999988776554 8999999999887766 5799999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccc-cceeeEEEEeeCceEEEecCCCCcceeeeccccC
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAA-DNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGG 232 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~-D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 232 (531)
+|.+++.++| | .|.+..+|++| +.||+.+++++.||... |+|+++++|++||++++... .|+.|+||.+..
T Consensus 86 ~l~~~~~~~G--l---~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNG--L---SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCC--C---cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCcccc
Confidence 9999999998 4 58888999999 58999999999999975 57899999999999988322 399999997743
Q ss_pred cc-e-EEEEEEEEEeee
Q 037058 233 AS-F-GVIFSWKVKIVP 247 (531)
Q Consensus 233 ~~-~-Givt~~~~k~~p 247 (531)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 22 2 599999999843
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=1.6e-21 Score=196.32 Aligned_cols=163 Identities=16% Similarity=0.174 Sum_probs=135.6
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecC-CccEEEeCCCCeEEEeCCCcH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFN-LRSIRVDIDNESAWVESGAIL 152 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~-l~~i~~d~~~~~v~v~aG~~~ 152 (531)
....|.+++.|+|++||++++++|+++++|+.++|||||....+.+.+ |++|+|++ ++.+.++ +.+++|+||+.|
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 456899999999999999999999999999999999999875544443 89999976 5556543 469999999999
Q ss_pred HHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCcc-ccCccccceeeEEEEeeCceEEEecCCCCcceeeecccc
Q 037058 153 GELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFR-KYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGG 231 (531)
Q Consensus 153 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~-~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 231 (531)
.+|.+++.++| | .|.++.+|++| +.||+..++++ +||.++|+|+++++|+++| +++.. ..|+.|+||++.
T Consensus 108 ~~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 99999999998 4 37888888888 67888888876 5567899999999999999 44422 259999999874
Q ss_pred CcceEEEEEEEEEeeecC
Q 037058 232 GASFGVIFSWKVKIVPVP 249 (531)
Q Consensus 232 ~~~~Givt~~~~k~~p~~ 249 (531)
.+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 333479999999999854
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=2.9e-21 Score=195.00 Aligned_cols=161 Identities=21% Similarity=0.227 Sum_probs=138.7
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHHH
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGE 154 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~~ 154 (531)
...+.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ |++|+|++|++|+++. .+++||||+.+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~ 109 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIID 109 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHH
Confidence 35789999999999999999999999999999999999876555554 8999998899998763 5899999999999
Q ss_pred HHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccC-ccccceeeEEEEeeCceEEEecCCCCcceeeeccccCc
Q 037058 155 LYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYG-LAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGA 233 (531)
Q Consensus 155 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~~ 233 (531)
|.+++.++| + .|.+..+|++| +.||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+...
T Consensus 110 l~~~~~~~G--l---~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~~ 181 (307)
T PRK13906 110 VSRVARDYA--L---TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSIIQ 181 (307)
T ss_pred HHHHHHHcC--C---ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccCC
Confidence 999999998 4 47777788888 67888999999996 78999999999999999998322 3899999987433
Q ss_pred c-eEEEEEEEEEeee
Q 037058 234 S-FGVIFSWKVKIVP 247 (531)
Q Consensus 234 ~-~Givt~~~~k~~p 247 (531)
. --||++++|++.|
T Consensus 182 ~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 182 KEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCEEEEEEEEEECC
Confidence 2 2499999999986
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=2.9e-20 Score=190.44 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=135.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILG 153 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~ 153 (531)
....+.+++.|+|++||++++++|+++++|+.|+|+|||....+.+.+ |+||+++ ++.++++.++.+++|+||+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 345799999999999999999999999999999999999886655554 8999998 5888887667899999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeC-ceEEEecCCCCcceeeecccc
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVN-GKILTRKSMGEDLFWAIRGGG 231 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~-G~i~~~~~~~~dL~~a~rG~~ 231 (531)
+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||. ++|+|.++++++.+ |++++.. +.|++|+||++.
T Consensus 106 ~l~~~a~~~GL-----~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAGL-----GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcCC-----ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 99999999993 4455555555543 5556666667775 58999999999965 9999832 359999999963
Q ss_pred C--cceEEEEEEEEEeeecC
Q 037058 232 G--ASFGVIFSWKVKIVPVP 249 (531)
Q Consensus 232 ~--~~~Givt~~~~k~~p~~ 249 (531)
. ++++|||+++||++|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 2 24789999999999863
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.82 E-value=2.3e-19 Score=176.88 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=160.6
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCC-CCccccCCC--eEEEEecCCccE-EEeCCCCeEE
Q 037058 70 FLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYE-GLSYVADVP--FLIIDLFNLRSI-RVDIDNESAW 145 (531)
Q Consensus 70 ~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~-g~~~~~~~~--givIdl~~l~~i-~~d~~~~~v~ 145 (531)
|.......|+.||-|++.+||.++|+.|.+|++-+.+.|||+|.. +..++.+.. -+-+|++.||+| .+|.++-|+.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 445566799999999999999999999999999999999999976 455555433 455788999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHhcCCceeecCCCCC----CccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-----e
Q 037058 146 VESGAILGELYHKIAEKSKLYGFPAGSCS----TVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-----R 216 (531)
Q Consensus 146 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~----~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-----~ 216 (531)
+++|+.-.+|.+.|.+.|+. .|..| =.++||++++.+.|+.-..||.+-|.|+.+++|++.|.+-+ .
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t----~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PR 308 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFT----CGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPR 308 (613)
T ss_pred EecCcchHHHHHHHhhcCcc----cCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCc
Confidence 99999999999999998832 34444 35799999999999999999999999999999999998875 2
Q ss_pred cCCCCcceeeeccccCcceEEEEEEEEEeeecCceEEEEEEEecc
Q 037058 217 KSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTL 261 (531)
Q Consensus 217 ~~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~ 261 (531)
-+.+||+..-+.|+ .|++||||++|+|+.|+|+......+.|+.
T Consensus 309 mS~GPDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 309 MSSGPDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred ccCCCCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccCc
Confidence 24689999999999 579999999999999999876666666653
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=4.1e-19 Score=178.57 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=137.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCc-cEEEeCCCCeEEEeCCCcH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLR-SIRVDIDNESAWVESGAIL 152 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~-~i~~d~~~~~v~v~aG~~~ 152 (531)
......+++.|+|++|+++++++|+++++|+.++|+|||....+.+.+ |+||++++++ .+..+.+..+++|+||+.|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 345788899999999999999999999999999999999998887776 9999998754 6666655559999999999
Q ss_pred HHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccC-ccccceeeEEEEeeCceEEEecCCCCcceeeecccc
Q 037058 153 GELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYG-LAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGG 231 (531)
Q Consensus 153 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 231 (531)
.+|.+++.++| | .|.+..+||+| +.||+.-++.+.|| .++|+|.++++++.+|++++... .|++|+||.+.
T Consensus 95 ~~l~~~~~~~G--L---~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S~ 166 (295)
T PRK14649 95 AGTARRLAAQG--W---AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTSV 166 (295)
T ss_pred HHHHHHHHHcC--C---ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccceee
Confidence 99999999998 4 67788999999 66775556666666 67999999999999999988322 39999999874
Q ss_pred Ccce---------EEEEEEEEEeeecC
Q 037058 232 GASF---------GVIFSWKVKIVPVP 249 (531)
Q Consensus 232 ~~~~---------Givt~~~~k~~p~~ 249 (531)
.... -||++++|++.|..
T Consensus 167 ~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 167 LKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred cccccccccccCCeEEEEEEEEECCCC
Confidence 3221 28999999998753
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=2e-17 Score=165.72 Aligned_cols=161 Identities=21% Similarity=0.255 Sum_probs=136.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHHH
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGE 154 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~~ 154 (531)
.....+++.|+|++|+++++++|++ ++|+.+.|+|+|....+.+.+ |+||.+++|+.++++. ..++|+||+.+.+
T Consensus 31 GG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~ 105 (297)
T PRK14653 31 GGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLKK 105 (297)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHHH
Confidence 4567789999999999999999999 999999999999998887776 9999997899998863 5899999999999
Q ss_pred HHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeCceEEEecCCCCcceeeeccccCc
Q 037058 155 LYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGA 233 (531)
Q Consensus 155 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~~ 233 (531)
|..++.++| | .|.+..+||+|. .||+.-++++.||. ++|.|.++++++ +|++++... .|+-|.||.+...
T Consensus 106 L~~~~~~~G--L---~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S~~~ 176 (297)
T PRK14653 106 LCLVAAKNG--L---SGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNSIFK 176 (297)
T ss_pred HHHHHHHCC--C---cchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCccccCC
Confidence 999999998 3 566667777775 57788888888998 799999999999 788887322 3999999976432
Q ss_pred c--eEEEEEEEEEeeecC
Q 037058 234 S--FGVIFSWKVKIVPVP 249 (531)
Q Consensus 234 ~--~Givt~~~~k~~p~~ 249 (531)
. --||++++||+.|..
T Consensus 177 ~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 177 EEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCCcEEEEEEEEEEecCC
Confidence 2 129999999998853
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.4e-16 Score=156.64 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=144.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILG 153 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~ 153 (531)
.......++.|++.+|+.++++++.+.++|+.+.|+|+|....+.+.+ +++|.+.+++.++++.+...++|++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 456888999999999999999999999999999999999887776665 999999999998888777799999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeCceEEEecCCCCcceeeeccccC
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGG 232 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 232 (531)
+|.+++.++| + .|.+..+||+|. .||+.-++.+.||. ++|.+.++++++.+|++.+... .||-|+||-+..
T Consensus 95 ~l~~~~~~~g--l---~GlE~l~gIPGs-vGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~--~el~f~YR~S~f 166 (291)
T COG0812 95 DLVRFALENG--L---SGLEFLAGIPGS-VGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA--EELGFGYRTSPF 166 (291)
T ss_pred HHHHHHHHcC--C---cchhhhcCCCcc-cchhhhccCcccccchheeEEEEEEEcCCCCEEEEEH--HHhCcccccCcC
Confidence 9999999998 4 677888888885 48888999999997 5999999999999999998322 399999998754
Q ss_pred cce-EEEEEEEEEeeec
Q 037058 233 ASF-GVIFSWKVKIVPV 248 (531)
Q Consensus 233 ~~~-Givt~~~~k~~p~ 248 (531)
..- .||++++|++.|-
T Consensus 167 ~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 167 KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 333 8999999999985
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4e-16 Score=155.89 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=138.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccc-cCCCeEEEEecCCccEEEeCCCCeEEEeCCCcH
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYV-ADVPFLIIDLFNLRSIRVDIDNESAWVESGAIL 152 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~-~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~ 152 (531)
......+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+ .+ |+||.+.+|+.++++. ..++|+||+.|
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 3457778999999999999999999999999999999999887766 55 8999887799998764 47999999999
Q ss_pred HHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeCceEEEecCCCCcceeeecccc
Q 037058 153 GELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGG 231 (531)
Q Consensus 153 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 231 (531)
.+|..++.++| | .|.+..+||+|. .||+.-++.+.||. ++|.|.++++++.+|++++... .|+.|+||.+.
T Consensus 105 ~~l~~~~~~~g--l---~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~S~ 176 (302)
T PRK14650 105 EDLCKFALQNE--L---SGLEFIYGLPGT-LGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKISP 176 (302)
T ss_pred HHHHHHHHHcC--C---chhhhhcCCCcc-hhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCccccccc
Confidence 99999999998 4 677788888884 48888889999995 6899999999999999987322 38999999774
Q ss_pred Ccc-eEEEEEEEEEeeecC
Q 037058 232 GAS-FGVIFSWKVKIVPVP 249 (531)
Q Consensus 232 ~~~-~Givt~~~~k~~p~~ 249 (531)
... -.||++++|++.|..
T Consensus 177 f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 177 FQNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 322 259999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=4.6e-16 Score=157.71 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEe-CCC--CeEEEeCCC
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVD-IDN--ESAWVESGA 150 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d-~~~--~~v~v~aG~ 150 (531)
.......++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.+ |+||.+ +++.++++ .++ .+++|+||+
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 34577889999999999999999999999999999999988777 555 899988 49999873 222 389999999
Q ss_pred cHHHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeC-ceEEEecCCCCcceeeec
Q 037058 151 ILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVN-GKILTRKSMGEDLFWAIR 228 (531)
Q Consensus 151 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~-G~i~~~~~~~~dL~~a~r 228 (531)
.|.+|.+++.++| | .|.+..+||+|. .||+.-++++.||. ++|.|.++++++.+ |++++... .|+.|+||
T Consensus 93 ~~~~l~~~~~~~g--l---~GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~YR 164 (334)
T PRK00046 93 NWHDLVLWTLQQG--M---PGLENLALIPGT-VGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFGYR 164 (334)
T ss_pred cHHHHHHHHHHcC--c---hhhHHhcCCCcc-hhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcccc
Confidence 9999999999998 4 677888888885 48888889999996 68999999999988 99987322 39999999
Q ss_pred cccCcc----eEEEEEEEEEeeec
Q 037058 229 GGGGAS----FGVIFSWKVKIVPV 248 (531)
Q Consensus 229 G~~~~~----~Givt~~~~k~~p~ 248 (531)
-+.... --||++++|++.|-
T Consensus 165 ~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 165 DSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccCCCCCcCCEEEEEEEEEecCC
Confidence 874332 23999999999884
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=2.9e-15 Score=151.70 Aligned_cols=166 Identities=20% Similarity=0.209 Sum_probs=136.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEe---CCCCeEEEeCCC
Q 037058 74 STLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVD---IDNESAWVESGA 150 (531)
Q Consensus 74 ~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d---~~~~~v~v~aG~ 150 (531)
.......++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.+ |+||.+.+|+.+++. .+...++|++|+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 345778899999999999999999999999999999999988877776 999999779988752 222479999999
Q ss_pred cHHHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEE--------------------ee
Q 037058 151 ILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIV--------------------DV 209 (531)
Q Consensus 151 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV--------------------~~ 209 (531)
.|.+|.+++.++| | .|.+..+||+|. .||+.-++.+.||. +.|.|.+++++ +.
T Consensus 104 ~~~~Lv~~~~~~g--l---~GlE~laGIPGT-VGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~ 177 (354)
T PRK14648 104 PVAALLAFCAHHA--L---RGLETFAGLPGS-VGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDK 177 (354)
T ss_pred cHHHHHHHHHHcC--C---cchhhhcCCCcc-hhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccC
Confidence 9999999999998 4 677888888885 48888889999996 58999999999 45
Q ss_pred CceE-------------EEecCCCCcceeeeccccCcc---------eEEEEEEEEEeeecC
Q 037058 210 NGKI-------------LTRKSMGEDLFWAIRGGGGAS---------FGVIFSWKVKIVPVP 249 (531)
Q Consensus 210 ~G~i-------------~~~~~~~~dL~~a~rG~~~~~---------~Givt~~~~k~~p~~ 249 (531)
+|++ ++. .+.|+.|+||-+.... --||++++|++.|..
T Consensus 178 ~g~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 178 RGECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CCceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 6776 221 2358999999874422 139999999998753
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.61 E-value=3.8e-16 Score=112.36 Aligned_cols=47 Identities=49% Similarity=0.817 Sum_probs=34.5
Q ss_pred cccCCCCcccCCCCCCCCCchhhhhhHHHhhhhccHHHHHHHHhhcCCCCCcccCCCCC
Q 037058 470 AYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528 (531)
Q Consensus 470 ~Y~Ny~d~~l~~~~~~~~~~~~~~~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~q~i~ 528 (531)
+|+||+|.+++ .+.|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~------------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP------------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG------------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc------------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999998864 127999999999999999999999999999999997
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.50 E-value=4.8e-14 Score=139.94 Aligned_cols=127 Identities=21% Similarity=0.330 Sum_probs=110.5
Q ss_pred EEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccceee
Q 037058 125 LIIDLFNLRSI-RVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIID 203 (531)
Q Consensus 125 ivIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~ 203 (531)
.-|++..|..| ++|.+++||+|+|+++++|+.++|-+.|+.|++. ..-...+|||++.|-|+-..|.+||+..+.+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhe
Confidence 44555555554 8999999999999999999999999999666543 455678899999999999999999999999999
Q ss_pred EEEEeeCceEEE--ecCCCCcceeeeccccCcceEEEEEEEEEeeecCceEE
Q 037058 204 AKIVDVNGKILT--RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVT 253 (531)
Q Consensus 204 ~~vV~~~G~i~~--~~~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~~ 253 (531)
.|||++||++++ .+++++|||+|+-.+ .|++|..+.+++|+.|..+.+.
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEcccc-cCchheeeeeEEEEEeccceEE
Confidence 999999999998 445899999999999 6899999999999999988543
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.48 E-value=2.9e-13 Score=133.56 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=122.3
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecC-CccEEEeCCCCeEEEeCCCcHHH
Q 037058 76 LKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFN-LRSIRVDIDNESAWVESGAILGE 154 (531)
Q Consensus 76 ~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~-l~~i~~d~~~~~v~v~aG~~~~~ 154 (531)
....+++ |+|++|+++++ ++|+.+.|+|+|....+.+.+ |+||.+.+ ++.++++. +|+||+.|.+
T Consensus 19 G~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~ 84 (273)
T PRK14651 19 GPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPG 84 (273)
T ss_pred ceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHH
Confidence 3455666 99999999988 589999999999988777666 89998865 66665532 6999999999
Q ss_pred HHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeCceEEEecCCCCcceeeeccccCc
Q 037058 155 LYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGA 233 (531)
Q Consensus 155 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~~ 233 (531)
|.+++.++| | .|.+..+||+|. .||+.-++.+.||. ++|.|.++++++ +|++++... .|+.|+||.+...
T Consensus 85 l~~~~~~~g--l---~GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f~YR~S~~~ 155 (273)
T PRK14651 85 LVRRAARLG--L---SGLEGLVGIPAQ-VGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGFGYRHSGLP 155 (273)
T ss_pred HHHHHHHCC--C---cchhhhcCCCcc-hhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccccccccCCC
Confidence 999999998 4 577778888884 48888889999995 689999999998 899888322 3999999977433
Q ss_pred ceEEEEEEEEEeeec
Q 037058 234 SFGVIFSWKVKIVPV 248 (531)
Q Consensus 234 ~~Givt~~~~k~~p~ 248 (531)
.--||++++|++.|.
T Consensus 156 ~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 156 PGHVVTRVRLKLRPS 170 (273)
T ss_pred CCEEEEEEEEEECCC
Confidence 224999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.17 E-value=1.2e-10 Score=113.99 Aligned_cols=144 Identities=14% Similarity=0.069 Sum_probs=114.2
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHHH
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGE 154 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~~ 154 (531)
....+.++.|++.+ + ++|+.+.|+|+|....+.+.+ +++ -+++++.++++. .+++|+||+.|.+
T Consensus 16 GG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~ 79 (257)
T PRK13904 16 GPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGK 79 (257)
T ss_pred CceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHH
Confidence 34566778888877 5 899999999999887776543 444 346688888754 4899999999999
Q ss_pred HHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeEEEEeeCceEEEecCCCCcceeeeccccCc
Q 037058 155 LYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL-AADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGA 233 (531)
Q Consensus 155 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~~ 233 (531)
|.+++.++| | .|.+..+||+|. .||+.-++++.||. ++|.|.++++++ |+ + ...|+.|+||-+..
T Consensus 80 l~~~~~~~g--l---~GlE~l~gIPGt-VGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~- 145 (257)
T PRK13904 80 IFNYAKKNN--L---GGFEFLGKLPGT-LGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI- 145 (257)
T ss_pred HHHHHHHCC--C---chhhhhcCCCcc-HHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC-
Confidence 999999998 4 677778888884 47888888999996 689999999998 42 2 23499999997743
Q ss_pred ceEEEEEEEEEeeecC
Q 037058 234 SFGVIFSWKVKIVPVP 249 (531)
Q Consensus 234 ~~Givt~~~~k~~p~~ 249 (531)
-.||++++||+.|..
T Consensus 146 -~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 -NGVILEARFKKTHGF 160 (257)
T ss_pred -CcEEEEEEEEECCCC
Confidence 259999999998854
No 34
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.38 E-value=0.11 Score=52.53 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=85.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCC-CccccCCCeEEEEecCCccE-EEe-CCCCeEEEeCCCcHHHHH
Q 037058 80 FIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEG-LSYVADVPFLIIDLFNLRSI-RVD-IDNESAWVESGAILGELY 156 (531)
Q Consensus 80 ~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~givIdl~~l~~i-~~d-~~~~~v~v~aG~~~~~l~ 156 (531)
-++.|+|.+|..++++. +. ...+.+|||+... ..........+||++++... .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57889999999888763 32 4678999998631 11222223689999886544 333 234679999999999997
Q ss_pred H--HHHhcC------CceeecCCCCCCccccccccCCCCCCCccccCccccce-----ee--EEEEeeCceEEEecCCCC
Q 037058 157 H--KIAEKS------KLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNI-----ID--AKIVDVNGKILTRKSMGE 221 (531)
Q Consensus 157 ~--~l~~~g------~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v-----~~--~~vV~~~G~i~~~~~~~~ 221 (531)
+ .+.++- ....-.+...+..||||.+..+.. .+|.+ ++ +++...+|+.... - .
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p---------~sD~~~~Llal~A~v~i~~~~g~R~vp-~--~ 149 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGAT---------SADSAPPLFALDAKLEIHSPNGVRFVP-I--N 149 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCc---------chhHHHHHHHcCCEEEEEcCCCcEEEE-H--H
Confidence 5 121110 000001244557789998865431 24432 33 3444556642221 1 2
Q ss_pred cceeeeccccCcceEEEEEEEEEeee
Q 037058 222 DLFWAIRGGGGASFGVIFSWKVKIVP 247 (531)
Q Consensus 222 dL~~a~rG~~~~~~Givt~~~~k~~p 247 (531)
|+|-+.+--.-..--|||++.+...+
T Consensus 150 df~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 150 GFYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred HhcCCccccccCCCceEEEEEeCCCC
Confidence 55543321100111399999887544
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.93 E-value=0.037 Score=51.37 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=61.1
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCC-ccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHH
Q 037058 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGL-SYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGEL 155 (531)
Q Consensus 78 p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l 155 (531)
+..+++|+|.+|..++++ + +-...+.+||++.... .........+||++++.+. .|..+++.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~---~-~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA---K-GPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH---H-GTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh---c-CCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 346789999999999988 2 2257888999985321 1111113699999876443 33334679999999999999
Q ss_pred HHH---------HHhcCCceeecCCCCCCccccccccCC
Q 037058 156 YHK---------IAEKSKLYGFPAGSCSTVGVGGHFSGG 185 (531)
Q Consensus 156 ~~~---------l~~~g~~l~~~~g~~~~vgvgG~~~gg 185 (531)
.+. |.+.-..+ -....-+..++||.+..+
T Consensus 78 ~~~~~~~~~~p~L~~~~~~i-as~~IRn~aTiGGNl~~~ 115 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAARRI-ASPQIRNRATIGGNLCNA 115 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-S-HHHHTT-BHHHHHHHT
T ss_pred hhcchhhhhHHHHHHHHHHh-CCHhHeeeeeeccccccC
Confidence 876 22111000 011233567899988444
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=94.63 E-value=0.11 Score=51.67 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=85.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHHH
Q 037058 80 FIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELYHK 158 (531)
Q Consensus 80 ~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~ 158 (531)
-+..|+|.+|..++++ +++-...+.+||++..... ......++||++++ .. .+..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4678999999988765 3433467899999974221 12123689999975 44 44456689999999999999763
Q ss_pred H------HhcCCceeecCCCCCCccccccccCCCCCCCccccCccccc-----eeeEEEEeeCceEEEecCCCCcceeee
Q 037058 159 I------AEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADN-----IIDAKIVDVNGKILTRKSMGEDLFWAI 227 (531)
Q Consensus 159 l------~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~-----v~~~~vV~~~G~i~~~~~~~~dL~~a~ 227 (531)
. .+.-..+ -.+..-+..||||.+..+-- .+|. .++.+|+..+++.+.. .|+|-
T Consensus 79 ~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~~-- 142 (258)
T PRK09799 79 RFIPAALREALGFV-YSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYLA-- 142 (258)
T ss_pred cccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhcC--
Confidence 2 1111000 01234456788888764421 2443 3566777777754431 14432
Q ss_pred ccccCcceEEEEEEEEE
Q 037058 228 RGGGGASFGVIFSWKVK 244 (531)
Q Consensus 228 rG~~~~~~Givt~~~~k 244 (531)
|. .-.|||++.+.
T Consensus 143 -g~---~~Eil~~I~iP 155 (258)
T PRK09799 143 -CP---CDRLLTEIIIP 155 (258)
T ss_pred -CC---CCcEEEEEEcC
Confidence 22 12589888765
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.47 E-value=0.27 Score=48.81 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=81.9
Q ss_pred EEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHHH-
Q 037058 81 IITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELYHK- 158 (531)
Q Consensus 81 vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~- 158 (531)
++.|+|.+|..++++ +++-.-.+.+|||+..-.-. .....++||++++ .. .|..+++.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 578999999887765 44334577899999742211 1113688999875 43 34445679999999999998752
Q ss_pred -----HHhcCCceeecCCCCCCccccccccCCCCCCCccccCccccc-----eeeEEEEeeCceEEEecCCCCcceeeec
Q 037058 159 -----IAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADN-----IIDAKIVDVNGKILTRKSMGEDLFWAIR 228 (531)
Q Consensus 159 -----l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~-----v~~~~vV~~~G~i~~~~~~~~dL~~a~r 228 (531)
|.+.-..+ -.+...+..|+||.+..+.- ..|. .++.+|+..+++.+.. .|+|-+
T Consensus 79 ~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g-- 142 (257)
T TIGR03312 79 LTPAALKEALGFV-YSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYLAS-- 142 (257)
T ss_pred chHHHHHHHHHHh-CCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhcCC--
Confidence 22211001 11244567789998765431 2342 3556666666544431 144332
Q ss_pred cccCcceEEEEEEEEE
Q 037058 229 GGGGASFGVIFSWKVK 244 (531)
Q Consensus 229 G~~~~~~Givt~~~~k 244 (531)
. .+ -+|+++.+.
T Consensus 143 -~-~~--Ell~~V~iP 154 (257)
T TIGR03312 143 -E-QR--ELIVEVIIP 154 (257)
T ss_pred -C-CC--cEEEEEEcC
Confidence 2 11 488888765
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.32 E-value=0.36 Score=52.14 Aligned_cols=152 Identities=13% Similarity=0.153 Sum_probs=89.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCC-CccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHH
Q 037058 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEG-LSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGEL 155 (531)
Q Consensus 78 p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l 155 (531)
..-++.|+|.+|+.++++- +. ...+.+||++... ..........+||++++.++ .|..+++.++|||++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988763 32 3678899998632 11111123689999886554 34445678999999999999
Q ss_pred HHHHHhcCCce-----eec-CCCCCCccccccccCCCCCCCccccCccccce-----ee--EEEEeeCceEEEecCCCCc
Q 037058 156 YHKIAEKSKLY-----GFP-AGSCSTVGVGGHFSGGGFGTIFRKYGLAADNI-----ID--AKIVDVNGKILTRKSMGED 222 (531)
Q Consensus 156 ~~~l~~~g~~l-----~~~-~g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v-----~~--~~vV~~~G~i~~~~~~~~d 222 (531)
.+.+.++=..| .+. +...+..+|||.+..+.- .+|.. ++ +++...+|+.... - .|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~vp-l--~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTLP-L--ED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEEe-H--HH
Confidence 87665431000 011 234567788888765431 24432 33 3444556643221 1 25
Q ss_pred ceeeeccccCcceEEEEEEEEEe
Q 037058 223 LFWAIRGGGGASFGVIFSWKVKI 245 (531)
Q Consensus 223 L~~a~rG~~~~~~Givt~~~~k~ 245 (531)
+|-.++--.-..--||+++.+..
T Consensus 336 F~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 336 FFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred hhcccccccCCCCceEEEEEecC
Confidence 55544321111224999988763
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.52 E-value=0.46 Score=47.43 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=25.6
Q ss_pred hhHHHhhhhccHHHHHHHHhhcCCCCCcccCCCCC
Q 037058 494 YVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528 (531)
Q Consensus 494 ~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~q~i~ 528 (531)
++| +.-||+.++|+++.|++|||.+++.-.|.|.
T Consensus 248 ~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 248 EDW-RRHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp HHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred HHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 478 5789999999999999999999998888773
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=91.12 E-value=0.44 Score=48.79 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=63.0
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCC-CccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHH
Q 037058 80 FIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEG-LSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELYH 157 (531)
Q Consensus 80 ~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~ 157 (531)
-++.|+|.+|..++++- ++ .-.+.+||++... .-........+||++++.++ .|+.+++.+++|+++++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47889999998887663 33 3467899997531 11111123689999876543 3334567899999999999855
Q ss_pred H---------HHhcCCceeecCCCCCCccccccccCC
Q 037058 158 K---------IAEKSKLYGFPAGSCSTVGVGGHFSGG 185 (531)
Q Consensus 158 ~---------l~~~g~~l~~~~g~~~~vgvgG~~~gg 185 (531)
. |.+.-. ..--+..-+..||||.+.+.
T Consensus 82 ~~~i~~~~p~L~~a~~-~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 82 DALVRTRWPALAQAAR-AVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred ChhhHhHhHHHHHHHH-HhCCHHHhCceecHHhhhcc
Confidence 2 221110 00012344577899998853
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.89 E-value=0.98 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=20.2
Q ss_pred ccHHHHHHHHhhcCCCCCcccC
Q 037058 503 NNFKRLVRVKTAVDPDNFFRNE 524 (531)
Q Consensus 503 ~n~~RL~~IK~kyDP~~vF~~~ 524 (531)
.++.+-.+||+++||+++|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6899999999999999999875
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=88.12 E-value=0.74 Score=45.85 Aligned_cols=97 Identities=9% Similarity=0.104 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCC-ccc-cCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHHHH--
Q 037058 84 PSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGL-SYV-ADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELYHK-- 158 (531)
Q Consensus 84 p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-~~~-~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~-- 158 (531)
|+|.+|+.++++- +. ...+.+||++..-. ... ......+||++++... .|+.+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7788888887774 32 36788999986321 111 1113689999987655 45556789999999999999642
Q ss_pred -------HHhcCCceeecCCCCCCccccccccCC
Q 037058 159 -------IAEKSKLYGFPAGSCSTVGVGGHFSGG 185 (531)
Q Consensus 159 -------l~~~g~~l~~~~g~~~~vgvgG~~~gg 185 (531)
|.+.- ...-.+..-+..|+||.+..+
T Consensus 77 i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 11110 000012345577899988654
No 43
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=87.41 E-value=1.5 Score=43.49 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=18.7
Q ss_pred HHHhhhhccHHHHHHHHhhcCCCCCcccC
Q 037058 496 WGLKYFKNNFKRLVRVKTAVDPDNFFRNE 524 (531)
Q Consensus 496 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 524 (531)
..+.| +++.+..++|+++||+|+|.+.
T Consensus 228 l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 228 LRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 44444 8999999999999999999763
No 44
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=86.83 E-value=1.1 Score=43.42 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=42.7
Q ss_pred eEEEEEEEEeCCcchhHHHHHHHHHHHHhhcccccCCCCccccCCCCcccCCCCCCCCCchhhhhhHHHhhhhc-cHHHH
Q 037058 430 IYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKN-NFKRL 508 (531)
Q Consensus 430 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~l~~~~~~~~~~~~~~~~~~~~yyg~-n~~RL 508 (531)
..++.+...-.++++.+...++++++.+.+.... |+-.-+ +.. +. ....|-...+|+ .+.-+
T Consensus 168 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----G~is~e-HG~-G~----------~k~~~~~~~~~~~~~~~~ 230 (248)
T PF02913_consen 168 NLHLYILFDPRDPEEPERAEALWDELYELVLELG-----GSISAE-HGI-GK----------LKKPYLEEEYGPAALRLM 230 (248)
T ss_dssp EEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT------BBSSS-SGG-GH----------HHHHHHCHHCHHHHHHHH
T ss_pred eEEEEeecccchHHHHHHHHHHHHHHHHHHHhcc-----cccccc-cch-hh----------hhHHHHHHhcchHHHHHH
Confidence 3444444333344666777788888877766552 211111 110 10 112344455565 79999
Q ss_pred HHHHhhcCCCCCcc
Q 037058 509 VRVKTAVDPDNFFR 522 (531)
Q Consensus 509 ~~IK~kyDP~~vF~ 522 (531)
++||+.+||+|+++
T Consensus 231 ~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 231 RAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHH-TTS-BS
T ss_pred HHhhhccCCccCCC
Confidence 99999999999986
No 45
>PLN02906 xanthine dehydrogenase
Probab=82.70 E-value=2.1 Score=52.19 Aligned_cols=79 Identities=8% Similarity=0.115 Sum_probs=55.6
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCC-CccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHH
Q 037058 79 QFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEG-LSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELY 156 (531)
Q Consensus 79 ~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~ 156 (531)
.-++.|+|.+|+.++++- +. ...+.+||++... .........++||++++..+ .|..+++.++|||++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 468899999999987663 22 2567889998732 11112223689999886554 344456789999999999999
Q ss_pred HHHHh
Q 037058 157 HKIAE 161 (531)
Q Consensus 157 ~~l~~ 161 (531)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 46
>PLN00192 aldehyde oxidase
Probab=81.45 E-value=3.9 Score=50.11 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=67.7
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHH
Q 037058 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELY 156 (531)
Q Consensus 78 p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~ 156 (531)
..-++.|+|.+|+.++++.....+-...+..||++..-.- ......++||++++..+ .|..+++.++|||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k-~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYK-DEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeee-ccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 4568999999999888763210012366788999863221 12223789999876554 344456789999999999998
Q ss_pred HHHHhcCCc---ee--------ec-CCCCCCccccccccCC
Q 037058 157 HKIAEKSKL---YG--------FP-AGSCSTVGVGGHFSGG 185 (531)
Q Consensus 157 ~~l~~~g~~---l~--------~~-~g~~~~vgvgG~~~gg 185 (531)
+.+...-.. +. +. .-..+..+|||.+..+
T Consensus 312 ~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 312 EALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 766543100 00 11 1344567788887654
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=78.75 E-value=5 Score=49.13 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=55.2
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCC-ccccCCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHHHH
Q 037058 79 QFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGL-SYVADVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGELY 156 (531)
Q Consensus 79 ~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-~~~~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~ 156 (531)
.-++.|+|.+|+.++++. +. .-.+..||++..-. .........+||++++..+ .|..+++.++|||++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 468899999999988764 32 35678899997321 1111112589999886554 344456789999999999998
Q ss_pred HHHH
Q 037058 157 HKIA 160 (531)
Q Consensus 157 ~~l~ 160 (531)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=74.90 E-value=10 Score=38.19 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=52.5
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCC-CccccCCCeEEEEecCCc-cE-EEeCCCCeEEEeCCCcHHH
Q 037058 78 PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEG-LSYVADVPFLIIDLFNLR-SI-RVDIDNESAWVESGAILGE 154 (531)
Q Consensus 78 p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~givIdl~~l~-~i-~~d~~~~~v~v~aG~~~~~ 154 (531)
+..+.+|.|.+|-..+++ +++ .-.+.+|||+..- .-.....+..+||++++. .. .+..+++.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456788999888766665 555 6788899999753 111122246889998874 22 3344567799999999999
Q ss_pred HH
Q 037058 155 LY 156 (531)
Q Consensus 155 l~ 156 (531)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=61.65 E-value=15 Score=38.09 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=81.0
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCcccc-CCCeEEEEecCCccE-EEeCCCCeEEEeCCCcHHH
Q 037058 77 KPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVA-DVPFLIIDLFNLRSI-RVDIDNESAWVESGAILGE 154 (531)
Q Consensus 77 ~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~-~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~ 154 (531)
.-..++.|.+.+|...++.. +=..++.-|++.+.-+-... .+-..||-+.++..+ .|+...+.+++|+|+++.+
T Consensus 202 ~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 202 GDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 34568899999999887653 22355666777753221111 011455556665554 5556678999999999999
Q ss_pred HHHHHHhcCCcee--ec-CC---CCCCccccccccCCCCCCCccccCcc--ccceeeEEEEeeCceEEE-ecCCCCccee
Q 037058 155 LYHKIAEKSKLYG--FP-AG---SCSTVGVGGHFSGGGFGTIFRKYGLA--ADNIIDAKIVDVNGKILT-RKSMGEDLFW 225 (531)
Q Consensus 155 l~~~l~~~g~~l~--~~-~g---~~~~vgvgG~~~ggg~g~~s~~~G~~--~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 225 (531)
.++.|..+=-.|. ++ -| ..+.-++||.+..|. . -|-+ .=..++.++++..|+-.+ ..- .|+|-
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS-----P-IGDtPPaLIALgA~ltLr~g~~~RtlPL--e~~Fi 349 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS-----P-IGDTPPALIALGATLTLRSGDGRRTLPL--EDYFI 349 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCC-----c-CCCCCchhhhcCcEEEEEecCCcccccH--HHHHH
Confidence 9999987521010 00 12 223445677665443 2 1211 123467788877766544 222 26677
Q ss_pred eec
Q 037058 226 AIR 228 (531)
Q Consensus 226 a~r 228 (531)
+|+
T Consensus 350 ~Y~ 352 (493)
T COG4630 350 AYG 352 (493)
T ss_pred Hhh
Confidence 765
No 50
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=47.37 E-value=1.1e+02 Score=32.57 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=32.2
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCceEEEcCC
Q 037058 77 KPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAG 110 (531)
Q Consensus 77 ~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggG 110 (531)
....|+.|+..|-...+.+.++++|+++.-||.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999988
No 51
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=44.20 E-value=38 Score=36.83 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=49.8
Q ss_pred CCCCceeecCCCcCcHHHHhhccccccccC-CCCCCccEEEecCCHHHHHHHHHHHHhCC-CceEE-----EcCCc-CCC
Q 037058 43 NEASNVFLTTNSSNYSSVLQSSIRNHRFLN-NSTLKPQFIITPSHVSHIQAAIRCSKQNG-LQVRV-----RSAGH-DYE 114 (531)
Q Consensus 43 ~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~p~t~~dv~~~v~~a~~~~-~~~~v-----~ggGh-~~~ 114 (531)
-++++.++..+-|+-+.+.. + .+. .....|-..++|.|.++|..+|++|+++- .|+.+ |+||| ||.
T Consensus 122 ~~I~gvvIsAGIP~le~A~E-l-----I~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSwe 195 (717)
T COG4981 122 APIDGVVISAGIPSLEEAVE-L-----IEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWE 195 (717)
T ss_pred CCcceEEEecCCCcHHHHHH-H-----HHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchh
Confidence 46789999999999887743 1 221 23457889999999999999999999984 56655 34565 565
Q ss_pred CC
Q 037058 115 GL 116 (531)
Q Consensus 115 g~ 116 (531)
..
T Consensus 196 Dl 197 (717)
T COG4981 196 DL 197 (717)
T ss_pred hc
Confidence 43
No 52
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=42.10 E-value=15 Score=38.93 Aligned_cols=21 Identities=24% Similarity=0.749 Sum_probs=19.3
Q ss_pred ccHHHHHHHHhhcCCCCCccc
Q 037058 503 NNFKRLVRVKTAVDPDNFFRN 523 (531)
Q Consensus 503 ~n~~RL~~IK~kyDP~~vF~~ 523 (531)
.|+.+-.+||+++||+++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 799999999999999999943
No 53
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.36 E-value=36 Score=34.72 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=40.4
Q ss_pred ceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecCC------HHHHHHHHHHHHhCC------CceEEEcCCc
Q 037058 47 NVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSH------VSHIQAAIRCSKQNG------LQVRVRSAGH 111 (531)
Q Consensus 47 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~t------~~dv~~~v~~a~~~~------~~~~v~ggGh 111 (531)
+.|.-|+...|.+.+..- +.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||+
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 345566777788887643 34663 4566777765 679999999998654 5577888876
No 54
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=38.51 E-value=20 Score=37.30 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.4
Q ss_pred hcc-HHHHHHHHhhcCCCCCccc
Q 037058 502 KNN-FKRLVRVKTAVDPDNFFRN 523 (531)
Q Consensus 502 g~n-~~RL~~IK~kyDP~~vF~~ 523 (531)
+.+ .+-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 7888999999999999963
No 55
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=38.42 E-value=1.2e+02 Score=30.49 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCHHhhhhcCCCCCCCCCceeecCCCcCcHHHHhhccccccccCCCCCCcc-EEEe
Q 037058 5 NFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQ-FIIT 83 (531)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~ 83 (531)
++++|-=+.=||..++=+.-+...-.|.--+..+......-=..|=.|.+-+|.+.++. +|. -++.
T Consensus 198 ~~e~l~e~a~l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP~p~~vd~~~wlk~-------------ypg~gfv~ 264 (324)
T COG2144 198 QLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIPYPADVDFRQWLKR-------------YPGSGFVL 264 (324)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHhhccCceeeecccCCcccccHHHHHHh-------------CCCCcEEE
Confidence 44444434445555553333333333333333332111111123456788888876542 444 5666
Q ss_pred cCCHHHHHHHHHHHHhCCCceEEEc
Q 037058 84 PSHVSHIQAAIRCSKQNGLQVRVRS 108 (531)
Q Consensus 84 p~t~~dv~~~v~~a~~~~~~~~v~g 108 (531)
..++++|.+++.++.+.++|+.+.|
T Consensus 265 ~v~pe~veev~~v~~~~g~~a~~~G 289 (324)
T COG2144 265 TVDPEDVEEVVDVFEEEGCPATVIG 289 (324)
T ss_pred EeCHHHHHHHHHHHHHcCCceEEEE
Confidence 7778899999999999999999977
No 56
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=36.84 E-value=95 Score=30.87 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=58.8
Q ss_pred CceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeE
Q 037058 46 SNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFL 125 (531)
Q Consensus 46 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~gi 125 (531)
...|++|+-++.+.... . ...+|.+|++++-+...+.|.+-++.=|||... ... -+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eE
Confidence 46789999998776421 1 268899999999999999999988888899754 112 24
Q ss_pred EEEecCCccE---EEeCCCCeEEEeCCCcHHHHHHHHHhcC
Q 037058 126 IIDLFNLRSI---RVDIDNESAWVESGAILGELYHKIAEKS 163 (531)
Q Consensus 126 vIdl~~l~~i---~~d~~~~~v~v~aG~~~~~l~~~l~~~g 163 (531)
+.|-..+..+ .++.+ =+=|.|+++......-..+|
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 4443312111 22222 23588999876655544445
No 57
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.89 E-value=58 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=30.2
Q ss_pred cccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEE
Q 037058 69 RFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRV 106 (531)
Q Consensus 69 r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v 106 (531)
||-. -..|+.||++.+++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5654 24899999999999999999999999987543
No 58
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.69 E-value=48 Score=35.50 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=40.6
Q ss_pred ceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecCCH------HHHHHHHHHHHhC--CCceEEEcCCc
Q 037058 47 NVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHV------SHIQAAIRCSKQN--GLQVRVRSAGH 111 (531)
Q Consensus 47 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~t~------~dv~~~v~~a~~~--~~~~~v~ggGh 111 (531)
+.|.-|+...+.+.+.. -+.||. .....++|..+ .+|.++++.+.+. ++=|.+||||+
T Consensus 139 ~viTs~~gAa~~D~~~~--~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 139 GVITSPTGAAIRDILTV--LRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EEEeCCccHHHHHHHHH--HHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 34556677778887664 356674 34567777766 7999999988874 55678888884
No 59
>PRK14758 hypothetical protein; Provisional
Probab=32.26 E-value=40 Score=20.75 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHhhc
Q 037058 5 NFELLLLLGTLCISG 19 (531)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (531)
+||++|+++.+|-..
T Consensus 6 rFEliLivlIlCali 20 (27)
T PRK14758 6 RFEFILIILILCALI 20 (27)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999888888653
No 60
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=30.50 E-value=52 Score=30.85 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCceEEEcCCcCCCC
Q 037058 90 IQAAIRCSKQNGLQVRVRSAGHDYEG 115 (531)
Q Consensus 90 v~~~v~~a~~~~~~~~v~ggGh~~~g 115 (531)
..+.++|++++++||.|.++|.++..
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHH
Confidence 45578899999999999999998654
No 61
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=29.01 E-value=79 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.3
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCceEEEc
Q 037058 79 QFIITPSHVSHIQAAIRCSKQNGLQVRVRS 108 (531)
Q Consensus 79 ~~vv~p~t~~dv~~~v~~a~~~~~~~~v~g 108 (531)
..|+.|.+.+|+..+++.|-+.+-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 358999999999999999998888988873
No 62
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=28.12 E-value=2.7e+02 Score=30.95 Aligned_cols=128 Identities=16% Similarity=0.285 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCcc-E-----EEeCCC---CeEEEeCCC----cHH
Q 037058 87 VSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRS-I-----RVDIDN---ESAWVESGA----ILG 153 (531)
Q Consensus 87 ~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~-i-----~~d~~~---~~v~v~aG~----~~~ 153 (531)
.++|.+.+..+.+++-++.....-.++...-.+.+ |+||-| |-. | -.++++ .+.-|=|-- ...
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDAS-MPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq 387 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDAS-MPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQ 387 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecC-cHHHHhccCCccCCCCCcccceeecCCccchHHHH
Confidence 57899999999999988888887777777667665 888854 221 1 122222 233333322 246
Q ss_pred HHHHHHHhcCCceeecCCCCCCccccccccCCCCCCCccccCcc-------ccceeeEEEEeeCceEEE-ecCCCCccee
Q 037058 154 ELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLA-------ADNIIDAKIVDVNGKILT-RKSMGEDLFW 225 (531)
Q Consensus 154 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~-------~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 225 (531)
++.+.+.++|..=+..-|+.+.||+ ++ .-+-.||.- .|-. ++||+.+|+++. -+.+..|+|.
T Consensus 388 ~~I~~ck~nGafDp~TmGsV~NVGL---MA-----qKAEEYGSHdkTFei~~~G~--v~Vvd~~G~vl~eh~Ve~GDIwR 457 (741)
T TIGR00178 388 VVIEDCKQNGAFDPTTMGTVPNVGL---MA-----QKAEEYGSHDKTFQIPADGV--VRVVDSSGEVLLEQSVEAGDIWR 457 (741)
T ss_pred HHHHHHHhcCCCCcccccCCcchhH---hH-----HHHHHhcCCCcceecCCCce--EEEEeCCCCEEEEeeccCCcchh
Confidence 7778888888311111266666543 22 223345533 2322 678899999987 4445679988
Q ss_pred eec
Q 037058 226 AIR 228 (531)
Q Consensus 226 a~r 228 (531)
++.
T Consensus 458 mcq 460 (741)
T TIGR00178 458 MCQ 460 (741)
T ss_pred hhh
Confidence 876
No 63
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=26.47 E-value=88 Score=28.84 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=26.6
Q ss_pred cEEEecCCHHHHHHHHHHHHh--CCCceEEEcCC
Q 037058 79 QFIITPSHVSHIQAAIRCSKQ--NGLQVRVRSAG 110 (531)
Q Consensus 79 ~~vv~p~t~~dv~~~v~~a~~--~~~~~~v~ggG 110 (531)
..|+.|.+.+|+..+++.+-+ .+-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 468999999999999999999 66898888643
No 64
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=26.09 E-value=1.2e+02 Score=26.19 Aligned_cols=32 Identities=3% Similarity=0.069 Sum_probs=29.1
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCceEEE
Q 037058 76 LKPQFIITPSHVSHIQAAIRCSKQNGLQVRVR 107 (531)
Q Consensus 76 ~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~ 107 (531)
...+.|++..+++|+.++-+-|++.|++..++
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 37999999999999999999999999987764
No 65
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=26.00 E-value=4.6e+02 Score=29.32 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCccE-EEecCCHHHHHHHHHHHHhCC-CceEEEcC-CcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcH
Q 037058 76 LKPQF-IITPSHVSHIQAAIRCSKQNG-LQVRVRSA-GHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAIL 152 (531)
Q Consensus 76 ~~p~~-vv~p~t~~dv~~~v~~a~~~~-~~~~v~gg-Gh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~ 152 (531)
+-|.. |..|++++|+++++.+|..++ -|+.+|=- |+......... .-.++.++ ..-+-.....+.+.=|..+
T Consensus 439 ~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~---~~~~~~Gk--~~i~~~G~~vail~~G~~~ 513 (627)
T COG1154 439 CIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPE---LEPLEIGK--GELLKEGEKVAILAFGTML 513 (627)
T ss_pred cCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccc---cccccccc--eEEEecCCcEEEEecchhh
Confidence 45655 578999999999999999998 69998853 33322111100 12233333 1122345567788888877
Q ss_pred HH---HHHHHHhcC
Q 037058 153 GE---LYHKIAEKS 163 (531)
Q Consensus 153 ~~---l~~~l~~~g 163 (531)
.. +.+.|.++|
T Consensus 514 ~~al~vae~L~~~G 527 (627)
T COG1154 514 PEALKVAEKLNAYG 527 (627)
T ss_pred HHHHHHHHHHHhcC
Confidence 64 445555544
No 66
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=23.19 E-value=1.7e+02 Score=25.08 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCc-eEEEcCCcC
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQ-VRVRSAGHD 112 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~-~~v~ggGh~ 112 (531)
...++.|+++.+++|+.++.+-|++.|++ ..++-.|+.
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 35899999999999999999999999988 455555554
No 67
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=21.95 E-value=1.3e+02 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=23.6
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCceEEEcCCcCCCCCccccCCCeEEEEecCCcc
Q 037058 80 FIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRS 134 (531)
Q Consensus 80 ~vv~p~t~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~ 134 (531)
.++.|++-+|+.+++...++.+ .+++|++.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 5789999999999998877733 58889888864
No 68
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.81 E-value=60 Score=34.79 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=37.5
Q ss_pred ceeecCCCcCcHHHHhhccccccccC-CCCCCccEEEecCCHHHHHHHHHHHHhC---CCceEEEcCCc
Q 037058 47 NVFLTTNSSNYSSVLQSSIRNHRFLN-NSTLKPQFIITPSHVSHIQAAIRCSKQN---GLQVRVRSAGH 111 (531)
Q Consensus 47 ~~v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~p~t~~dv~~~v~~a~~~---~~~~~v~ggGh 111 (531)
+.|.-|+...+.+.+.. -+.||.. .....|..|==...+.+|.++++.+.+. ++=|.+||||+
T Consensus 133 ~vits~~~aa~~D~~~~--~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 133 GVITSQTGAALADILHI--LKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EEEeCCccHHHHHHHHH--HHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 44556677778887664 3456742 1222333333334457899999888763 44577777775
No 69
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=21.74 E-value=53 Score=36.20 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcccC
Q 037058 505 FKRLVRVKTAVDPDNFFRNE 524 (531)
Q Consensus 505 ~~RL~~IK~kyDP~~vF~~~ 524 (531)
+.+-++|++++||+++|.+.
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78889999999999999874
No 70
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=20.96 E-value=1.6e+02 Score=25.39 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=32.0
Q ss_pred cccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCce-EEEcCCc
Q 037058 69 RFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQV-RVRSAGH 111 (531)
Q Consensus 69 r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~-~v~ggGh 111 (531)
+|.. ...++.|++..+++++.++.+-|.+.+++. .++=.|+
T Consensus 43 ~W~~--~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T cd02430 43 AWER--EGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGR 84 (115)
T ss_pred HHHh--cCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 3653 337899999999999999999999999984 4444454
No 71
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=20.90 E-value=57 Score=36.29 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=22.2
Q ss_pred hHHHhhhhccHHHHHHHHhhcCCCCCcccC
Q 037058 495 VWGLKYFKNNFKRLVRVKTAVDPDNFFRNE 524 (531)
Q Consensus 495 ~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 524 (531)
.+.+.| + +.+.+++++++||+++|.+.
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 455554 4 99999999999999999764
No 72
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.36 E-value=81 Score=33.95 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEE--cCCcC
Q 037058 85 SHVSHIQAAIRCSKQNGLQVRVR--SAGHD 112 (531)
Q Consensus 85 ~t~~dv~~~v~~a~~~~~~~~v~--ggGh~ 112 (531)
-|.+||+++|++|+-+||+|.+- .-||.
T Consensus 247 YT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 247 YTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred ecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 36799999999999999998864 44664
No 73
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=20.08 E-value=1.7e+02 Score=25.11 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=31.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCc-eEEEcCCcC
Q 037058 75 TLKPQFIITPSHVSHIQAAIRCSKQNGLQ-VRVRSAGHD 112 (531)
Q Consensus 75 ~~~p~~vv~p~t~~dv~~~v~~a~~~~~~-~~v~ggGh~ 112 (531)
...++.|+++.+++++.++.+-|++.|++ +.++=.|+.
T Consensus 47 ~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~T 85 (115)
T cd02407 47 EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRT 85 (115)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 45899999999999999999999999987 445545553
Done!