Your job contains 1 sequence.
>037064
STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENV
NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI
DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR
EEALQLP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037064
(187 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116164 - symbol:HDR "4-hydroxy-3-methylbut-2-... 785 4.8e-78 1
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 138 3.5e-14 2
TIGR_CMR|VC_0685 - symbol:VC_0685 "hydroxymethylbutenyl p... 138 3.9e-14 2
UNIPROTKB|Q749Y8 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 118 4.2e-09 2
TIGR_CMR|GSU_2604 - symbol:GSU_2604 "penicillin tolerance... 118 4.2e-09 2
TIGR_CMR|CPS_1211 - symbol:CPS_1211 "4-hydroxy-3-methylbu... 136 2.1e-08 1
TIGR_CMR|ECH_0502 - symbol:ECH_0502 "hydroxymethylbutenyl... 125 2.7e-08 2
UNIPROTKB|P62623 - symbol:ispH "1-hydroxy-2-methyl-2-(E)-... 108 4.3e-08 2
UNIPROTKB|Q8EBI7 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 118 4.9e-07 2
TIGR_CMR|SO_3529 - symbol:SO_3529 "penicillin tolerance p... 118 4.9e-07 2
TIGR_CMR|DET_1344 - symbol:DET_1344 "hydroxymethylbutenyl... 113 6.2e-07 2
TIGR_CMR|NSE_0438 - symbol:NSE_0438 "4-hydroxy-3-methylbu... 108 1.7e-05 2
TIGR_CMR|APH_0380 - symbol:APH_0380 "4-hydroxy-3-methylbu... 102 2.1e-05 2
TIGR_CMR|CJE_0973 - symbol:CJE_0973 "4-hydroxy-3-methylbu... 118 2.2e-05 1
UNIPROTKB|Q81LU9 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 90 0.00034 2
TIGR_CMR|BA_4511 - symbol:BA_4511 "penicillin tolerance p... 90 0.00034 2
>TAIR|locus:2116164 [details] [associations]
symbol:HDR "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:3702 "Arabidopsis thaliana" [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS]
[GO:0046677 "response to antibiotic" evidence=ISS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
activity" evidence=IGI] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0009570 EMBL:CP002687 GO:GO:0046872
GO:GO:0051538 GO:GO:0016114 EMBL:AL035521 EMBL:AL161585
GO:GO:0019288 GO:GO:0050992 GO:GO:0046429 EMBL:AY883838
EMBL:AY168881 EMBL:AY042877 EMBL:AY081454 EMBL:AK317707
EMBL:AK222055 IPI:IPI00536800 PIR:T04781 RefSeq:NP_567965.1
UniGene:At.2618 ProteinModelPortal:Q94B35 SMR:Q94B35 STRING:Q94B35
PRIDE:Q94B35 EnsemblPlants:AT4G34350.1 GeneID:829585
KEGG:ath:AT4G34350 TAIR:At4g34350 InParanoid:Q94B35 KO:K03527
OMA:QDAMFSL PhylomeDB:Q94B35 ProtClustDB:PLN02821
BioCyc:ARA:AT4G34350-MONOMER-9581
BioCyc:MetaCyc:AT4G34350-MONOMER-9581 Genevestigator:Q94B35
GO:GO:0051745 TIGRFAMs:TIGR00216 Uniprot:Q94B35
Length = 466
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 151/186 (81%), Positives = 169/186 (90%)
Query: 1 STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENV 60
STKE F+EKFK ++SKGFDPD DLVKVGIANQTTM+KGETEEIG+L+E TMMRK+GVENV
Sbjct: 280 STKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLLETTMMRKYGVENV 339
Query: 61 NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120
+ HFISFNTIC A QERQDA+Y+LVEEKIDL+LVVGGWNSSNTS LQ I+E RGIPSYWI
Sbjct: 340 SGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWI 399
Query: 121 DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180
DSEKRIGPGNK+AYKL +GELVEKEN+LPKG ITIGVT+GASTPDK +E L KVF+IKR
Sbjct: 400 DSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKVVEDALVKVFDIKR 459
Query: 181 EEALQL 186
EE LQL
Sbjct: 460 EELLQL 465
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 138 (53.6 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 39/103 (37%), Positives = 57/103 (55%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ + QTT ++E ++VE +++K G E V FNTICHA + RQ+ KL
Sbjct: 153 KIAVIAQTTQ---KSENFWQVVE--VIKKKGGE-VRP----FNTICHATRTRQEESRKLA 202
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP 128
E ++++LVVGG NS+NT L I P+Y I+ I P
Sbjct: 203 TE-VEVMLVVGGKNSANTKKLAQICAATNTPTYLIEEASEIKP 244
Score = 79 (32.9 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 144 KENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI-KREEAL 184
K W G+ +G+TAGASTP IE V KKV ++ E+AL
Sbjct: 243 KPEWFA-GKAKVGITAGASTPAWIIEEVRKKVEQMASMEQAL 283
>TIGR_CMR|VC_0685 [details] [associations]
symbol:VC_0685 "hydroxymethylbutenyl pyrophosphate
reductase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 OMA:QDAMFSL GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 ProtClustDB:PRK01045 PIR:G82293 RefSeq:NP_230334.2
DNASU:2615474 GeneID:2615474 KEGG:vch:VC0685 PATRIC:20080487
Uniprot:Q9KU44
Length = 316
Score = 138 (53.6 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 70 ICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP 128
IC+A Q RQDAV +++ E++D+++VVG NSSN++ L+ +AE G P Y ID + I P
Sbjct: 198 ICYATQNRQDAV-RILAEQVDVMVVVGSKNSSNSTRLKELAEKLGTPGYLIDCPQDIDP 255
Score = 68 (29.0 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 147 WLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178
W Q+ IGVTAGAS P++ + +L ++ E+
Sbjct: 257 WFVDAQL-IGVTAGASAPEELVNQILDRIKEL 287
>UNIPROTKB|Q749Y8 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00191
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS HOGENOM:HOG000220193 RefSeq:NP_953649.1 DNASU:2686313
GeneID:2686313 KEGG:gsu:GSU2604 PATRIC:22028061
ProtClustDB:CLSK790176 BioCyc:GSUL243231:GH27-2583-MONOMER
Uniprot:Q749Y8
Length = 282
Score = 118 (46.6 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVY 82
++ KVG+ QTT ++ E K V K + K G V FNTIC A RQD
Sbjct: 150 NMKKVGVVAQTT----QSFETLKNVVKECLLKGGEIRV------FNTICDATAVRQDEAK 199
Query: 83 KLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126
L E +D ++V+GG+NS+NT L + + +Y I++ + +
Sbjct: 200 ALARE-VDCMIVIGGFNSANTKRLAEVCSELQPRTYHIETAQEL 242
Score = 66 (28.3 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREE 182
+W +G +GVTAGASTP I+ V++++ E ++
Sbjct: 245 SWF-QGVERVGVTAGASTPKWLIDEVIERIQEFDNKK 280
>TIGR_CMR|GSU_2604 [details] [associations]
symbol:GSU_2604 "penicillin tolerance protein LytB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0015968 "stringent response"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS HOGENOM:HOG000220193 RefSeq:NP_953649.1 DNASU:2686313
GeneID:2686313 KEGG:gsu:GSU2604 PATRIC:22028061
ProtClustDB:CLSK790176 BioCyc:GSUL243231:GH27-2583-MONOMER
Uniprot:Q749Y8
Length = 282
Score = 118 (46.6 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVY 82
++ KVG+ QTT ++ E K V K + K G V FNTIC A RQD
Sbjct: 150 NMKKVGVVAQTT----QSFETLKNVVKECLLKGGEIRV------FNTICDATAVRQDEAK 199
Query: 83 KLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126
L E +D ++V+GG+NS+NT L + + +Y I++ + +
Sbjct: 200 ALARE-VDCMIVIGGFNSANTKRLAEVCSELQPRTYHIETAQEL 242
Score = 66 (28.3 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREE 182
+W +G +GVTAGASTP I+ V++++ E ++
Sbjct: 245 SWF-QGVERVGVTAGASTPKWLIDEVIERIQEFDNKK 280
>TIGR_CMR|CPS_1211 [details] [associations]
symbol:CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0046677 "response to antibiotic" evidence=ISS] HAMAP:MF_00191
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 ProtClustDB:PRK01045 RefSeq:YP_267954.1
STRING:Q486R1 GeneID:3519583 KEGG:cps:CPS_1211 PATRIC:21465667
OMA:LVTKVHQ BioCyc:CPSY167879:GI48-1292-MONOMER Uniprot:Q486R1
Length = 309
Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 70 ICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126
IC+A Q RQDAV ++ + K+DL+LVVG NSSN++ L+ +A G+ SY ID+ + I
Sbjct: 196 ICYATQNRQDAVREIAD-KVDLMLVVGAKNSSNSNRLKELASKMGVTSYLIDTAENI 251
>TIGR_CMR|ECH_0502 [details] [associations]
symbol:ECH_0502 "hydroxymethylbutenyl pyrophosphate
reductase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0051538 GO:GO:0016114 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
OMA:LVTKVHQ RefSeq:YP_507317.1 STRING:Q2GGW6 GeneID:3927316
KEGG:ech:ECH_0502 PATRIC:20576476
BioCyc:ECHA205920:GJNR-504-MONOMER Uniprot:Q2GGW6
Length = 319
Score = 125 (49.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 37/101 (36%), Positives = 58/101 (57%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T+EI + K + +KF N+ IC+A Q RQ AV K +
Sbjct: 167 KLAYVTQTTLSVDDTKEI---INK-LKQKF--PNIKGP--DLKDICYATQNRQTAV-KQL 217
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126
E +D+I V+G NSSN++ L+ +AE + P++ IDS + I
Sbjct: 218 SELVDIIFVLGSKNSSNSNRLKELAELK-TPAFLIDSYQEI 257
Score = 49 (22.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 155 IGVTAGASTPDKAIEGV---LKKVFEIK 179
IG+TAGAS P+ I V LK+ IK
Sbjct: 268 IGITAGASAPEILITEVIDLLKQHMNIK 295
>UNIPROTKB|P62623 [details] [associations]
symbol:ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
reductase" species:83333 "Escherichia coli K-12" [GO:0050992
"dimethylallyl diphosphate biosynthetic process" evidence=IEA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051745
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"
evidence=IEA] [GO:0051538 "3 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
[GO:0046677 "response to antibiotic" evidence=IDA] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=IDA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IDA] HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401
UniPathway:UPA00056 UniPathway:UPA00059 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0046677 GO:GO:0006744 GO:GO:0051538 GO:GO:0019288 EMBL:X54945
GO:GO:0050992 KO:K03527 OMA:QDAMFSL GO:GO:0051745
TIGRFAMs:TIGR00216 eggNOG:COG0761 HOGENOM:HOG000220192
ProtClustDB:PRK01045 EMBL:AY062212 PIR:JE0403 RefSeq:NP_414570.1
RefSeq:YP_488335.1 PDB:3F7T PDB:3KE8 PDB:3KE9 PDB:3KEF PDB:3KEL
PDB:3KEM PDB:3SZL PDB:3SZO PDB:3SZU PDB:3T0F PDB:3T0G PDB:3URK
PDB:3UTC PDB:3UTD PDB:3UV3 PDB:3UV6 PDB:3UV7 PDB:3UWM PDB:3ZGL
PDB:3ZGN PDBsum:3F7T PDBsum:3KE8 PDBsum:3KE9 PDBsum:3KEF
PDBsum:3KEL PDBsum:3KEM PDBsum:3SZL PDBsum:3SZO PDBsum:3SZU
PDBsum:3T0F PDBsum:3T0G PDBsum:3URK PDBsum:3UTC PDBsum:3UTD
PDBsum:3UV3 PDBsum:3UV6 PDBsum:3UV7 PDBsum:3UWM PDBsum:3ZGL
PDBsum:3ZGN ProteinModelPortal:P62623 SMR:P62623 DIP:DIP-35808N
IntAct:P62623 PaxDb:P62623 PRIDE:P62623
EnsemblBacteria:EBESCT00000002954 EnsemblBacteria:EBESCT00000002955
EnsemblBacteria:EBESCT00000002956 EnsemblBacteria:EBESCT00000002957
EnsemblBacteria:EBESCT00000017150 GeneID:12933923 GeneID:944777
KEGG:ecj:Y75_p0029 KEGG:eco:b0029 PATRIC:32115149 EchoBASE:EB1073
EcoGene:EG11081 BioCyc:EcoCyc:EG11081-MONOMER
BioCyc:ECOL316407:JW0027-MONOMER BioCyc:MetaCyc:EG11081-MONOMER
BRENDA:1.17.1.2 EvolutionaryTrace:P62623 Genevestigator:P62623
GO:GO:0042380 Uniprot:P62623
Length = 316
Score = 108 (43.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 160 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 211
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126
E+ +++LVVG NSSN++ L +A+ G ++ ID K I
Sbjct: 212 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI 251
Score = 72 (30.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 144 KENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
+E W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 252 QEEWVKEVKC-VGVTAGASAPDILVQNVVARLQQLGGGEAIPL 293
>UNIPROTKB|Q8EBI7 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051538 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
RefSeq:NP_719076.1 DNASU:1171202 GeneID:1171202 KEGG:son:SO_3529
PATRIC:23526748 OMA:SMDDTAD Uniprot:Q8EBI7
Length = 318
Score = 118 (46.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 21 DIDLVKVGIANQTTMIKGETEEIGKLVE--KTMMRKF-GVENVNEHFISFNTICHAAQER 77
D++ ++V N + T + ++ ++++F +E + + IC+A Q R
Sbjct: 158 DVETLEVRDPNNLCFVTQTTLSVDDTLDIISALLKRFPSIEGPRK-----DDICYATQNR 212
Query: 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122
QDAV L + +DL++VVG NSSN++ L+ +A G SY +D+
Sbjct: 213 QDAVRNLSAD-VDLLIVVGSKNSSNSNRLRELALKTGTQSYLVDT 256
Score = 48 (22.0 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 155 IGVTAGASTPDKAIEGVLKKVFEI 178
+ VTAGAS P+ ++ V++ + ++
Sbjct: 271 VAVTAGASAPEVLVQQVVQAIAKL 294
>TIGR_CMR|SO_3529 [details] [associations]
symbol:SO_3529 "penicillin tolerance protein LytB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051538 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
RefSeq:NP_719076.1 DNASU:1171202 GeneID:1171202 KEGG:son:SO_3529
PATRIC:23526748 OMA:SMDDTAD Uniprot:Q8EBI7
Length = 318
Score = 118 (46.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 21 DIDLVKVGIANQTTMIKGETEEIGKLVE--KTMMRKF-GVENVNEHFISFNTICHAAQER 77
D++ ++V N + T + ++ ++++F +E + + IC+A Q R
Sbjct: 158 DVETLEVRDPNNLCFVTQTTLSVDDTLDIISALLKRFPSIEGPRK-----DDICYATQNR 212
Query: 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122
QDAV L + +DL++VVG NSSN++ L+ +A G SY +D+
Sbjct: 213 QDAVRNLSAD-VDLLIVVGSKNSSNSNRLRELALKTGTQSYLVDT 256
Score = 48 (22.0 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 155 IGVTAGASTPDKAIEGVLKKVFEI 178
+ VTAGAS P+ ++ V++ + ++
Sbjct: 271 VAVTAGASAPEVLVQQVVQAIAKL 294
>TIGR_CMR|DET_1344 [details] [associations]
symbol:DET_1344 "hydroxymethylbutenyl pyrophosphate
reductase" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220193 OMA:LVTKVHQ RefSeq:YP_182055.1 STRING:Q3Z6U4
GeneID:3229386 KEGG:det:DET1344 PATRIC:21609717
ProtClustDB:CLSK836989 BioCyc:DETH243164:GJNF-1345-MONOMER
Uniprot:Q3Z6U4
Length = 284
Score = 113 (44.8 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 20 PDIDLVKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ 78
PD+ +G+ +QTT I G T + ++++ +++ + I+ +T+CH +ERQ
Sbjct: 149 PDVSRY-IGVLSQTTQIPTGFTSFVKNVIDQALVKDAEIR------IA-DTLCHDIRERQ 200
Query: 79 DAVYKLVEEKIDLILVVGGWNSSNTSSL 106
A +L ++DL+LV+GG NS+NT L
Sbjct: 201 TAALELAG-RVDLMLVIGGHNSANTRHL 227
Score = 52 (23.4 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 147 WLPKGQITIGVTAGASTPDKAIEGV 171
WL +G IG+T+GAST + I V
Sbjct: 250 WL-RGVNRIGITSGASTDETTISEV 273
>TIGR_CMR|NSE_0438 [details] [associations]
symbol:NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 OMA:DPRSNNS RefSeq:YP_506323.1 STRING:Q2GDX3
GeneID:3932177 KEGG:nse:NSE_0438 PATRIC:22680929
ProtClustDB:CLSK2528057 BioCyc:NSEN222891:GHFU-459-MONOMER
Uniprot:Q2GDX3
Length = 303
Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 57 VENVNEHF---ISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR 113
+ + E F + + +C+A Q RQ+AV L +E +DL+L+VG NSSN+ +L ++
Sbjct: 175 INKIKEKFPNVVGRSDVCYATQNRQEAVKALAKE-VDLMLIVGSTNSSNSRNLMQVSSKI 233
Query: 114 GIPSYWIDSEKRIGP 128
++ ID+ + P
Sbjct: 234 CQKAFLIDNYNEVEP 248
Score = 46 (21.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGV---LKKVF 176
+W +G +G+++GAS P+ ++ + LKK F
Sbjct: 249 DWF-EGVDRVGISSGASAPEILVQDLVSFLKKRF 281
>TIGR_CMR|APH_0380 [details] [associations]
symbol:APH_0380 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016114 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 ProtClustDB:PRK01045 RefSeq:YP_504986.1
STRING:Q2GKW5 GeneID:3931091 KEGG:aph:APH_0380 PATRIC:20949366
OMA:EENIEFR BioCyc:APHA212042:GHPM-408-MONOMER Uniprot:Q2GKW5
Length = 324
Score = 102 (41.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 70 ICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122
IC+A Q RQ AV +L +D++L++GG NSSNT+ L +A+ R S+ I S
Sbjct: 202 ICYATQNRQTAVKELAS-MVDVMLIMGGKNSSNTNRLLDLAKVRNPRSFLIGS 253
Score = 54 (24.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 155 IGVTAGASTPDKAIEGVLK 173
IGVTAGAS P +E +LK
Sbjct: 268 IGVTAGASAPAILVEELLK 286
>TIGR_CMR|CJE_0973 [details] [associations]
symbol:CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:195099 "Campylobacter jejuni RM1221" [GO:0015968
"stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS ProtClustDB:PRK01045 RefSeq:YP_178971.1 STRING:Q5HUR4
GeneID:3231484 KEGG:cjr:CJE0973 PATRIC:20043729
HOGENOM:HOG000220193 BioCyc:CJEJ195099:GJC0-993-MONOMER
Uniprot:Q5HUR4
Length = 277
Score = 118 (46.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 67 FNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126
FNTIC A + QDA+ +L K D+++VVGG NS+NT L +IA+ SY I++E+ +
Sbjct: 182 FNTICDATFKNQDAIKEL-SLKSDVMVVVGGKNSANTKQLFLIAKTNCEDSYLIETEEEL 240
>UNIPROTKB|Q81LU9 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051538
GO:GO:0019288 GO:GO:0050992 KO:K03527 GO:GO:0051745
TIGRFAMs:TIGR00216 RefSeq:NP_846735.1 RefSeq:YP_021156.1
RefSeq:YP_030438.1 IntAct:Q81LU9 DNASU:1088236
EnsemblBacteria:EBBACT00000010185 EnsemblBacteria:EBBACT00000016704
EnsemblBacteria:EBBACT00000020757 GeneID:1088236 GeneID:2818527
GeneID:2852179 KEGG:ban:BA_4511 KEGG:bar:GBAA_4511 KEGG:bat:BAS4190
eggNOG:COG0761 HOGENOM:HOG000220192 OMA:DPRSNNS
ProtClustDB:PRK01045 BioCyc:BANT260799:GJAJ-4246-MONOMER
BioCyc:BANT261594:GJ7F-4388-MONOMER Uniprot:Q81LU9
Length = 316
Score = 90 (36.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 21 DIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA 80
+I K+ + NQTTM + + + + + ++K KF ++ IC A Q RQ+A
Sbjct: 158 EIPTDKILVTNQTTMSQWDVQHLMEDIQK----KFPTAEFHKE------ICLATQVRQEA 207
Query: 81 VYKLVEEKIDLILVVGGWNSSNTSSL-QVIAEDRGIPSY 118
V K + DL +VVG S+N++ L QV E G +Y
Sbjct: 208 VAKQADVA-DLTIVVGDPKSNNSNRLAQVSQEIAGTKAY 245
Score = 57 (25.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 129 GNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVL 172
G K AY++ ++ E WL +G + VTAGASTP + V+
Sbjct: 241 GTK-AYRVADVSEIKLE-WL-QGVENVAVTAGASTPTPITKEVI 281
>TIGR_CMR|BA_4511 [details] [associations]
symbol:BA_4511 "penicillin tolerance protein LytB"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0015968 "stringent response"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 RefSeq:NP_846735.1
RefSeq:YP_021156.1 RefSeq:YP_030438.1 IntAct:Q81LU9 DNASU:1088236
EnsemblBacteria:EBBACT00000010185 EnsemblBacteria:EBBACT00000016704
EnsemblBacteria:EBBACT00000020757 GeneID:1088236 GeneID:2818527
GeneID:2852179 KEGG:ban:BA_4511 KEGG:bar:GBAA_4511 KEGG:bat:BAS4190
eggNOG:COG0761 HOGENOM:HOG000220192 OMA:DPRSNNS
ProtClustDB:PRK01045 BioCyc:BANT260799:GJAJ-4246-MONOMER
BioCyc:BANT261594:GJ7F-4388-MONOMER Uniprot:Q81LU9
Length = 316
Score = 90 (36.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 21 DIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA 80
+I K+ + NQTTM + + + + + ++K KF ++ IC A Q RQ+A
Sbjct: 158 EIPTDKILVTNQTTMSQWDVQHLMEDIQK----KFPTAEFHKE------ICLATQVRQEA 207
Query: 81 VYKLVEEKIDLILVVGGWNSSNTSSL-QVIAEDRGIPSY 118
V K + DL +VVG S+N++ L QV E G +Y
Sbjct: 208 VAKQADVA-DLTIVVGDPKSNNSNRLAQVSQEIAGTKAY 245
Score = 57 (25.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 129 GNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVL 172
G K AY++ ++ E WL +G + VTAGASTP + V+
Sbjct: 241 GTK-AYRVADVSEIKLE-WL-QGVENVAVTAGASTPTPITKEVI 281
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 187 187 0.00085 110 3 11 23 0.37 33
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 589 (63 KB)
Total size of DFA: 151 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.42u 0.13s 16.55t Elapsed: 00:00:01
Total cpu time: 16.43u 0.13s 16.56t Elapsed: 00:00:01
Start: Fri May 10 20:25:00 2013 End: Fri May 10 20:25:01 2013