BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037064
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate
Reductase, The Terminal Enzyme Of The Non-mevalonate
Pathway
pdb|3DNF|B Chain B, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate
Reductase, The Terminal Enzyme Of The Non-mevalonate
Pathway
Length = 297
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 25/144 (17%)
Query: 41 EEIGKLVEKTMMRKFGVENVNEHFI------SFNTICHAAQERQDAVYKLVEEKIDLILV 94
E +G + + T +F E V E + NTIC+A RQ++V KL E +D++++
Sbjct: 157 ERVGIVAQTTQNEEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPE-VDVMII 215
Query: 95 VGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQIT 154
+GG NS NT L I+++ +Y I++ + + P W +G
Sbjct: 216 IGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKR 257
Query: 155 IGVTAGASTPDKAIEGVLKKVFEI 178
+G++AGASTPD IE V ++ EI
Sbjct: 258 VGISAGASTPDWIIEQVKSRIQEI 281
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
pdb|3T0F|B Chain B, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
Length = 328
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 172 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 223
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 224 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 265
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 266 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 305
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE8|B Chain B, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE9|A Chain A, Crystal Structure Of Isph:intermediate-Complex
pdb|3KE9|B Chain B, Crystal Structure Of Isph:intermediate-Complex
pdb|3KEF|A Chain A, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEF|B Chain B, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEL|A Chain A, Crystal Structure Of Isph:pp Complex
pdb|3KEL|B Chain B, Crystal Structure Of Isph:pp Complex
pdb|3KEM|A Chain A, Crystal Structure Of Isph:ipp Complex
pdb|3KEM|B Chain B, Crystal Structure Of Isph:ipp Complex
Length = 326
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 170 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 221
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 222 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 263
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 264 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 303
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp
pdb|4EB3|B Chain B, Crystal Structure Of Isph In Complex With Iso-hmbpp
Length = 327
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 172 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 223
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 224 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 265
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 266 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 305
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3URK|B Chain B, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3UTC|A Chain A, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTC|B Chain B, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTD|A Chain A, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UTD|B Chain B, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UV3|A Chain A, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV3|B Chain B, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV6|A Chain A, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV6|B Chain B, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV7|A Chain A, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UV7|B Chain B, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UWM|A Chain A, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
pdb|3UWM|B Chain B, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
Length = 324
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 168 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 219
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 220 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 261
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 262 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 301
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant
pdb|3SZU|B Chain B, Isph:hmbpp Complex Structure Of E126q Mutant
Length = 328
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 172 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 223
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 224 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 265
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 266 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 305
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGL|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
Length = 332
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 176 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 227
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 228 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 269
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 270 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 309
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4C|B Chain B, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|A Chain A, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|B Chain B, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|A Chain A, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|B Chain B, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
Length = 323
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 168 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 219
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 220 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 261
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 262 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 301
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3F7T|B Chain B, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3SZL|A Chain A, Isph:ligand Mutants - Wt 70sec
pdb|3SZL|B Chain B, Isph:ligand Mutants - Wt 70sec
pdb|3SZO|A Chain A, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
pdb|3SZO|B Chain B, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
Length = 328
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
K+ QTT+ +T ++ + K + G + IC+A RQ+AV L
Sbjct: 172 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAVRALA 223
Query: 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
E+ +++LVVG NSSN++ L +A+ G ++ ID K I +E
Sbjct: 224 EQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI-----------------QE 265
Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 266 EWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 305
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
pdb|3T0G|B Chain B, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
Length = 328
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 19/119 (15%)
Query: 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127
+ IC+A RQ+AV L E+ +++LVVG NSSN++ L +A+ G ++ ID K I
Sbjct: 206 DDICYATTNRQEAVRALAEQA-EVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI- 263
Query: 128 PGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQL 186
+E W+ + + +GVTAGAS PD ++ V+ ++ ++ EA+ L
Sbjct: 264 ----------------QEEWVKEVK-CVGVTAGASAPDILVQNVVARLQQLGGGEAIPL 305
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 365 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 413
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 382 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVXANKEEKV 430
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 382 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 430
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 382 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 430
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 382 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 430
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 367 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 415
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 365 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 413
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 381 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 429
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 382 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 430
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 46 LVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLV----EEKI 89
L E + K+G+ENV + SF + HA +R+ V K+V EEK+
Sbjct: 383 LTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKV 431
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHG 139
IL GG S N LQV+A+ P Y ID+ G+ AY+ HG
Sbjct: 438 ILATGG-ASHNREILQVLADVFDAPVYVIDTANSACVGS--AYRAFHG 482
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHG 139
IL GG S N LQV+A+ P Y ID+ G+ AY+ HG
Sbjct: 438 ILATGG-ASHNREILQVLADVFDAPVYVIDTANSACVGS--AYRAFHG 482
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYK 83
LV+ G+A IK +++ K E R FG V EH ER DAV
Sbjct: 48 LVRSGVAPDQPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGEL-----SERYDAVIY 102
Query: 84 LVEEKIDLILVVGG 97
V + D +L + G
Sbjct: 103 AVGAQSDRMLNIPG 116
>pdb|1E6V|A Chain A, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|D Chain D, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 553
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 86 EEKIDLILVVGGWNSSNTSS-----LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL 136
EEK + GGW S I E+RG+P Y D +G M+Y++
Sbjct: 22 EEKYTKFYIFGGWKQSERKKEFKEWADKIVEERGVPHYNPDIGVPLGQRKLMSYQV 77
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYK 83
LV+ G+A IK +++ K E R FG V EH ER DAV
Sbjct: 48 LVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGEL-----SERYDAVIY 102
Query: 84 LVEEKIDLILVVGG 97
V + D +L + G
Sbjct: 103 AVGAQSDRMLNIPG 116
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 141 LVEKENWLPKGQITIGVTAGA---STPDKAIEGVLKKVFEIKR 180
L KE W +GQI IG + A +TP+ + K F +KR
Sbjct: 386 LPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKR 428
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 141 LVEKENWLPKGQITIGVTAGA---STPDKAIEGVLKKVFEIKR 180
L KE W +GQI IG + A +TP+ + K F +KR
Sbjct: 387 LPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKR 429
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,372,637
Number of Sequences: 62578
Number of extensions: 213199
Number of successful extensions: 603
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 32
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)