Query 037064
Match_columns 187
No_of_seqs 121 out of 1030
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 5.6E-62 1.2E-66 446.5 17.5 186 1-186 275-460 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 5.9E-57 1.3E-61 407.6 17.7 177 2-178 202-378 (387)
3 COG0761 lytB 4-Hydroxy-3-methy 100.0 3.1E-48 6.8E-53 338.7 13.4 128 25-179 158-285 (294)
4 TIGR00216 ispH_lytB (E)-4-hydr 100.0 4E-48 8.7E-53 338.4 13.5 126 25-177 154-279 (280)
5 PF02401 LYTB: LytB protein; 100.0 8.3E-48 1.8E-52 336.5 12.9 131 21-178 151-281 (281)
6 PRK12360 4-hydroxy-3-methylbut 100.0 1.7E-47 3.6E-52 334.6 13.6 125 25-178 157-281 (281)
7 PRK01045 ispH 4-hydroxy-3-meth 100.0 3.9E-47 8.4E-52 334.6 14.1 131 23-180 154-284 (298)
8 PRK00087 4-hydroxy-3-methylbut 100.0 1E-43 2.2E-48 338.3 13.5 125 25-178 154-278 (647)
9 cd01537 PBP1_Repressors_Sugar_ 94.8 0.4 8.6E-06 38.2 9.8 140 26-177 1-146 (264)
10 TIGR00216 ispH_lytB (E)-4-hydr 89.6 0.98 2.1E-05 40.2 6.2 92 63-178 88-179 (280)
11 PF00532 Peripla_BP_1: Peripla 89.5 7.2 0.00016 33.4 11.3 123 38-171 14-138 (279)
12 TIGR03677 rpl7ae 50S ribosomal 89.4 2.1 4.6E-05 33.0 7.3 73 87-178 41-116 (117)
13 cd01391 Periplasmic_Binding_Pr 89.1 4.2 9.2E-05 31.6 8.9 93 27-126 2-94 (269)
14 cd06281 PBP1_LacI_like_5 Ligan 88.9 12 0.00025 30.7 12.2 123 27-162 2-126 (269)
15 cd06312 PBP1_ABC_sugar_binding 88.4 13 0.00028 30.6 12.4 91 26-123 1-91 (271)
16 PF02401 LYTB: LytB protein; 88.4 1.9 4.2E-05 38.3 7.2 94 64-178 87-180 (281)
17 PRK04175 rpl7ae 50S ribosomal 87.8 2.7 5.9E-05 32.8 6.9 73 87-178 45-120 (122)
18 cd01536 PBP1_ABC_sugar_binding 87.7 8.7 0.00019 30.8 10.1 91 26-125 1-91 (267)
19 PRK12360 4-hydroxy-3-methylbut 87.6 1.5 3.2E-05 39.1 6.0 90 64-177 92-181 (281)
20 cd06273 PBP1_GntR_like_1 This 87.5 14 0.0003 30.0 13.8 138 27-177 2-145 (268)
21 cd06320 PBP1_allose_binding Pe 87.3 6.2 0.00013 32.4 9.2 90 26-123 1-91 (275)
22 cd06308 PBP1_sensor_kinase_lik 87.3 6.6 0.00014 32.2 9.4 90 26-123 1-90 (270)
23 cd06319 PBP1_ABC_sugar_binding 86.8 9.4 0.0002 31.2 10.0 88 27-123 2-89 (277)
24 PF13407 Peripla_BP_4: Peripla 86.7 9.5 0.0002 31.0 9.9 88 27-123 1-89 (257)
25 cd06282 PBP1_GntR_like_2 Ligan 86.2 14 0.0003 29.8 10.6 116 35-161 9-125 (266)
26 PRK05282 (alpha)-aspartyl dipe 86.1 1.9 4E-05 37.3 5.6 94 25-163 32-125 (233)
27 PRK13600 putative ribosomal pr 86.0 1.4 2.9E-05 32.7 4.1 45 83-127 24-68 (84)
28 PRK14072 6-phosphofructokinase 85.9 1.5 3.2E-05 40.9 5.3 52 74-127 89-143 (416)
29 PRK01045 ispH 4-hydroxy-3-meth 85.5 2.3 5.1E-05 38.1 6.1 94 63-178 88-181 (298)
30 cd04509 PBP1_ABC_transporter_G 85.4 11 0.00023 30.5 9.5 60 63-125 42-102 (299)
31 PRK10014 DNA-binding transcrip 85.3 22 0.00049 30.3 12.6 140 26-177 66-210 (342)
32 cd06310 PBP1_ABC_sugar_binding 85.3 10 0.00022 31.0 9.5 90 26-123 1-91 (273)
33 cd06342 PBP1_ABC_LIVBP_like Ty 85.1 1.7 3.6E-05 36.8 4.8 59 62-123 41-99 (334)
34 cd08191 HHD 6-hydroxyhexanoate 84.8 6.6 0.00014 35.6 8.8 79 25-113 23-104 (386)
35 PLN02251 pyrophosphate-depende 84.2 1.6 3.4E-05 42.5 4.7 53 75-127 177-230 (568)
36 COG3340 PepE Peptidase E [Amin 83.9 1.4 3.1E-05 38.2 3.9 60 72-162 70-129 (224)
37 cd06339 PBP1_YraM_LppC_lipopro 83.7 7.5 0.00016 33.9 8.4 112 62-177 35-150 (336)
38 cd06276 PBP1_FucR_like Ligand- 83.3 11 0.00025 31.1 9.0 85 76-162 40-127 (247)
39 cd06349 PBP1_ABC_ligand_bindin 83.1 2.4 5.1E-05 36.5 5.0 55 63-119 42-96 (340)
40 cd06331 PBP1_AmiC_like Type I 82.9 1.7 3.8E-05 37.2 4.1 56 62-119 41-96 (333)
41 cd06301 PBP1_rhizopine_binding 82.8 14 0.0003 30.2 9.2 89 26-123 1-90 (272)
42 COG1358 RPL8A Ribosomal protei 81.9 5.7 0.00012 31.0 6.3 55 70-127 28-83 (116)
43 cd01543 PBP1_XylR Ligand-bindi 81.5 12 0.00025 30.7 8.4 116 26-160 1-117 (265)
44 cd06286 PBP1_CcpB_like Ligand- 81.2 27 0.00059 28.2 11.9 114 35-161 9-123 (260)
45 PRK06555 pyrophosphate--fructo 81.1 3.5 7.5E-05 38.6 5.6 46 75-120 99-147 (403)
46 cd06367 PBP1_iGluR_NMDA N-term 81.0 5 0.00011 35.0 6.3 58 59-118 34-94 (362)
47 cd06318 PBP1_ABC_sugar_binding 80.8 20 0.00044 29.4 9.6 89 26-123 1-89 (282)
48 PF10087 DUF2325: Uncharacteri 80.7 5.4 0.00012 29.1 5.5 51 71-122 30-83 (97)
49 cd02958 UAS UAS family; UAS is 80.5 20 0.00044 26.3 9.1 83 66-176 24-112 (114)
50 cd06335 PBP1_ABC_ligand_bindin 80.4 3.3 7.2E-05 36.0 5.0 114 62-177 41-164 (347)
51 PRK10653 D-ribose transporter 80.3 30 0.00065 29.0 10.7 105 9-123 10-116 (295)
52 TIGR02069 cyanophycinase cyano 80.2 4 8.7E-05 35.3 5.4 53 79-162 75-127 (250)
53 cd06356 PBP1_Amide_Urea_BP_lik 80.0 2.4 5.1E-05 36.8 3.9 57 62-120 41-97 (334)
54 smart00852 MoCF_biosynth Proba 80.0 2.1 4.5E-05 32.9 3.2 63 99-176 16-83 (135)
55 TIGR02477 PFKA_PPi diphosphate 79.7 3.9 8.3E-05 39.6 5.6 54 74-127 147-201 (539)
56 cd06344 PBP1_ABC_ligand_bindin 79.4 3.6 7.9E-05 35.3 4.9 114 62-177 40-161 (332)
57 cd06292 PBP1_LacI_like_10 Liga 79.1 33 0.00072 27.9 10.8 126 27-161 2-131 (273)
58 cd06354 PBP1_BmpA_PnrA_like Pe 79.1 36 0.00078 28.3 12.9 115 35-162 12-131 (265)
59 cd06299 PBP1_LacI_like_13 Liga 78.7 33 0.00072 27.7 12.0 125 27-164 2-128 (265)
60 cd06321 PBP1_ABC_sugar_binding 78.5 33 0.00072 28.0 10.2 125 27-162 2-131 (271)
61 cd06323 PBP1_ribose_binding Pe 78.3 27 0.00058 28.1 9.4 82 35-124 9-90 (268)
62 PRK00087 4-hydroxy-3-methylbut 77.7 5.5 0.00012 38.9 6.0 91 63-177 88-178 (647)
63 cd01413 SIR2_Af2 SIR2_Af2: Arc 77.2 6.7 0.00015 33.1 5.8 45 77-123 162-207 (222)
64 PLN02884 6-phosphofructokinase 77.1 4.5 9.8E-05 37.8 5.1 50 76-127 131-183 (411)
65 cd06272 PBP1_hexuronate_repres 76.9 38 0.00082 27.4 11.8 118 27-161 2-120 (261)
66 COG1609 PurR Transcriptional r 76.8 53 0.0012 29.0 13.1 123 26-162 60-185 (333)
67 cd00765 Pyrophosphate_PFK Phos 76.6 5.5 0.00012 38.7 5.7 54 74-127 152-206 (550)
68 cd01574 PBP1_LacI Ligand-bindi 76.2 39 0.00085 27.2 13.1 122 27-161 2-125 (264)
69 cd06353 PBP1_BmpA_Med_like Per 76.1 30 0.00066 29.4 9.6 127 26-165 1-133 (258)
70 cd03146 GAT1_Peptidase_E Type 75.7 11 0.00024 31.4 6.6 72 24-114 31-102 (212)
71 cd06346 PBP1_ABC_ligand_bindin 75.6 2.9 6.3E-05 35.7 3.2 56 62-119 41-97 (312)
72 cd06268 PBP1_ABC_transporter_L 75.4 26 0.00057 28.1 8.6 112 63-177 42-161 (298)
73 cd06338 PBP1_ABC_ligand_bindin 75.3 6.2 0.00014 33.8 5.2 115 62-178 45-168 (345)
74 cd06345 PBP1_ABC_ligand_bindin 75.2 5.7 0.00012 34.2 4.9 56 63-120 42-97 (344)
75 cd06311 PBP1_ABC_sugar_binding 75.0 32 0.0007 28.1 9.2 92 27-123 2-94 (274)
76 TIGR01481 ccpA catabolite cont 74.9 51 0.0011 27.9 11.1 125 25-162 60-186 (329)
77 cd07766 DHQ_Fe-ADH Dehydroquin 74.4 23 0.0005 31.0 8.6 87 25-123 24-113 (332)
78 cd06306 PBP1_TorT-like TorT-li 73.9 27 0.00059 28.8 8.5 87 27-122 2-89 (268)
79 cd08551 Fe-ADH iron-containing 73.5 22 0.00048 31.8 8.4 78 25-112 24-104 (370)
80 cd06382 PBP1_iGluR_Kainate N-t 73.0 4 8.6E-05 35.0 3.4 53 64-119 39-92 (327)
81 PF00994 MoCF_biosynth: Probab 72.9 2.5 5.3E-05 32.8 1.9 65 98-177 14-83 (144)
82 cd06315 PBP1_ABC_sugar_binding 72.7 40 0.00086 28.1 9.3 88 26-123 2-90 (280)
83 cd06328 PBP1_SBP_like_2 Peripl 72.7 6.6 0.00014 34.0 4.7 115 62-178 42-163 (333)
84 cd06298 PBP1_CcpA_like Ligand- 72.1 50 0.0011 26.6 12.5 124 27-163 2-127 (268)
85 PRK13371 4-hydroxy-3-methylbut 71.9 14 0.0003 34.5 6.8 109 64-177 133-249 (387)
86 PF14359 DUF4406: Domain of un 71.8 7.2 0.00016 28.9 4.1 36 81-118 54-90 (92)
87 cd06363 PBP1_Taste_receptor Li 71.7 5.5 0.00012 35.7 4.1 55 63-119 68-136 (410)
88 cd06274 PBP1_FruR Ligand bindi 71.6 25 0.00053 28.6 7.7 79 79-161 46-125 (264)
89 cd06313 PBP1_ABC_sugar_binding 71.6 31 0.00068 28.6 8.4 88 26-123 1-89 (272)
90 PF03575 Peptidase_S51: Peptid 71.2 2.3 5E-05 33.5 1.4 41 68-114 17-57 (154)
91 cd06366 PBP1_GABAb_receptor Li 70.9 6.8 0.00015 33.8 4.4 56 62-119 40-95 (350)
92 PLN02564 6-phosphofructokinase 70.9 9.8 0.00021 36.5 5.7 54 74-127 162-216 (484)
93 cd06340 PBP1_ABC_ligand_bindin 70.7 8.9 0.00019 33.3 5.1 57 63-121 45-101 (347)
94 TIGR02634 xylF D-xylose ABC tr 70.7 37 0.00081 28.9 8.8 85 31-124 4-89 (302)
95 cd06305 PBP1_methylthioribose_ 70.6 56 0.0012 26.5 10.9 89 26-123 1-89 (273)
96 PRK00414 gmhA phosphoheptose i 70.6 39 0.00085 27.8 8.7 42 83-125 107-149 (192)
97 cd06337 PBP1_ABC_ligand_bindin 70.6 7.6 0.00016 34.0 4.7 56 62-119 43-98 (357)
98 cd01575 PBP1_GntR Ligand-bindi 70.6 52 0.0011 26.4 9.3 123 27-162 2-126 (268)
99 cd06314 PBP1_tmGBP Periplasmic 70.6 49 0.0011 27.1 9.3 87 26-123 1-88 (271)
100 cd06300 PBP1_ABC_sugar_binding 70.5 53 0.0012 26.7 9.5 91 26-123 1-94 (272)
101 cd06289 PBP1_MalI_like Ligand- 70.5 51 0.0011 26.5 9.2 93 80-177 47-145 (268)
102 PLN03028 pyrophosphate--fructo 70.4 12 0.00026 36.9 6.4 53 75-127 160-213 (610)
103 cd01410 SIRT7 SIRT7: Eukaryoti 70.0 14 0.0003 30.9 5.9 58 63-123 133-191 (206)
104 cd06355 PBP1_FmdD_like Peripla 69.7 6.3 0.00014 34.4 4.0 54 62-117 41-94 (348)
105 cd06352 PBP1_NPR_GC_like Ligan 69.7 17 0.00038 31.7 6.7 63 62-126 42-105 (389)
106 cd06304 PBP1_BmpA_like Peripla 69.3 60 0.0013 26.6 9.6 124 26-163 1-131 (260)
107 PF05159 Capsule_synth: Capsul 69.2 7.7 0.00017 33.0 4.3 67 90-167 1-67 (269)
108 cd06302 PBP1_LsrB_Quorum_Sensi 69.1 58 0.0013 27.5 9.7 88 27-123 2-90 (298)
109 cd06327 PBP1_SBP_like_1 Peripl 68.9 7.3 0.00016 33.4 4.1 56 63-120 41-96 (334)
110 cd06329 PBP1_SBP_like_3 Peripl 68.6 5.2 0.00011 34.6 3.2 113 62-177 41-169 (342)
111 cd00296 SIR2 SIR2 superfamily 68.3 17 0.00036 29.9 6.0 47 77-125 160-207 (222)
112 cd00758 MoCF_BD MoCF_BD: molyb 68.1 6.6 0.00014 30.3 3.3 63 99-176 17-84 (133)
113 cd01409 SIRT4 SIRT4: Eukaryoti 68.0 15 0.00031 32.0 5.8 46 76-123 194-240 (260)
114 cd01540 PBP1_arabinose_binding 67.8 54 0.0012 27.0 9.0 86 27-123 2-88 (289)
115 cd06357 PBP1_AmiC Periplasmic 67.7 33 0.00071 30.1 8.1 54 63-118 42-95 (360)
116 PRK05562 precorrin-2 dehydroge 67.4 28 0.00062 29.9 7.4 70 88-177 85-158 (223)
117 TIGR03669 urea_ABC_arch urea A 66.9 7.8 0.00017 34.8 4.0 55 62-118 42-96 (374)
118 PRK14071 6-phosphofructokinase 66.8 11 0.00024 34.5 5.0 44 75-120 94-137 (360)
119 cd06309 PBP1_YtfQ_like Peripla 66.8 43 0.00093 27.4 8.2 44 79-123 46-89 (273)
120 cd06280 PBP1_LacI_like_4 Ligan 66.8 68 0.0015 26.0 11.1 123 27-163 2-126 (263)
121 PF13458 Peripla_BP_6: Peripla 66.6 8.3 0.00018 32.6 4.0 115 62-178 43-162 (343)
122 cd00363 PFK Phosphofructokinas 66.3 6.8 0.00015 35.4 3.5 52 74-127 78-132 (338)
123 PTZ00287 6-phosphofructokinase 66.2 14 0.00031 39.7 6.2 54 74-127 914-968 (1419)
124 PRK14138 NAD-dependent deacety 65.8 17 0.00037 31.3 5.7 62 63-127 156-219 (244)
125 PRK09860 putative alcohol dehy 65.6 42 0.0009 30.6 8.5 80 25-114 32-114 (383)
126 cd06296 PBP1_CatR_like Ligand- 65.0 73 0.0016 25.7 11.8 80 79-162 46-127 (270)
127 PRK10355 xylF D-xylose transpo 64.9 69 0.0015 28.0 9.5 88 24-123 25-115 (330)
128 cd06330 PBP1_Arsenic_SBP_like 64.9 15 0.00032 31.5 5.3 114 63-178 42-165 (346)
129 cd06343 PBP1_ABC_ligand_bindin 64.8 13 0.00028 32.2 4.9 114 62-177 48-170 (362)
130 cd06341 PBP1_ABC_ligand_bindin 64.7 35 0.00076 29.1 7.5 150 26-178 1-160 (341)
131 PRK00481 NAD-dependent deacety 64.5 16 0.00035 31.0 5.4 45 77-123 168-213 (242)
132 PRK13602 putative ribosomal pr 64.4 13 0.00028 26.9 4.1 46 82-127 21-66 (82)
133 cd06348 PBP1_ABC_ligand_bindin 64.3 13 0.00028 32.0 4.7 112 63-177 42-163 (344)
134 PRK07085 diphosphate--fructose 64.2 17 0.00037 35.3 6.0 54 74-127 150-204 (555)
135 TIGR02483 PFK_mixed phosphofru 64.2 15 0.00033 33.1 5.3 44 74-120 80-123 (324)
136 cd06371 PBP1_sensory_GC_DEF_li 64.1 11 0.00024 33.6 4.4 52 63-118 43-94 (382)
137 PTZ00468 phosphofructokinase f 63.9 14 0.0003 39.5 5.6 54 74-127 182-236 (1328)
138 TIGR01768 GGGP-family geranylg 63.8 70 0.0015 27.6 9.1 76 80-177 19-99 (223)
139 PRK06683 hypothetical protein; 63.4 13 0.00028 27.0 3.9 41 87-127 26-66 (82)
140 cd06324 PBP1_ABC_sugar_binding 63.2 56 0.0012 27.7 8.4 87 27-123 2-91 (305)
141 cd06372 PBP1_GC_G_like Ligand- 63.1 10 0.00022 33.5 4.0 63 63-127 43-106 (391)
142 cd01539 PBP1_GGBP Periplasmic 62.8 85 0.0019 26.6 9.5 89 26-123 1-91 (303)
143 cd06347 PBP1_ABC_ligand_bindin 62.6 16 0.00036 30.7 5.0 58 63-122 42-99 (334)
144 cd06350 PBP1_GPCR_family_C_lik 62.5 16 0.00034 31.3 4.9 55 63-119 53-120 (348)
145 cd06270 PBP1_GalS_like Ligand 62.5 83 0.0018 25.5 12.3 82 76-162 42-126 (268)
146 PF15608 PELOTA_1: PELOTA RNA 62.2 24 0.00053 27.0 5.3 38 79-117 46-83 (100)
147 cd01412 SIRT5_Af1_CobB SIRT5_A 62.2 22 0.00048 29.7 5.7 44 78-123 156-200 (224)
148 cd06303 PBP1_LuxPQ_Quorum_Sens 62.0 73 0.0016 26.4 8.8 87 26-120 1-90 (280)
149 COG1648 CysG Siroheme synthase 61.8 23 0.0005 30.0 5.8 63 99-176 82-144 (210)
150 PRK06830 diphosphate--fructose 61.6 17 0.00036 34.5 5.3 53 75-127 159-212 (443)
151 TIGR00441 gmhA phosphoheptose 61.4 28 0.00061 27.4 5.9 39 87-125 78-117 (154)
152 TIGR02417 fruct_sucro_rep D-fr 61.4 1E+02 0.0022 26.1 13.6 127 25-162 61-188 (327)
153 PRK15404 leucine ABC transport 61.3 15 0.00032 32.6 4.7 54 63-119 68-121 (369)
154 PRK09701 D-allose transporter 61.2 84 0.0018 26.8 9.2 92 25-124 25-117 (311)
155 TIGR02638 lactal_redase lactal 61.2 45 0.00098 30.2 7.9 79 25-113 30-111 (379)
156 cd06316 PBP1_ABC_sugar_binding 61.1 89 0.0019 26.0 9.2 88 26-123 1-90 (294)
157 cd00763 Bacterial_PFK Phosphof 61.1 17 0.00038 32.7 5.1 44 74-120 78-121 (317)
158 PRK10886 DnaA initiator-associ 60.5 25 0.00055 29.4 5.7 47 76-125 100-147 (196)
159 TIGR00283 arch_pth2 peptidyl-t 60.4 23 0.00051 27.4 5.1 59 93-175 52-112 (115)
160 cd06336 PBP1_ABC_ligand_bindin 60.4 14 0.00031 32.0 4.4 60 63-125 46-105 (347)
161 cd02430 PTH2 Peptidyl-tRNA hyd 60.3 24 0.00052 27.3 5.1 62 90-175 49-112 (115)
162 cd06359 PBP1_Nba_like Type I p 60.1 16 0.00035 31.3 4.6 57 63-121 40-96 (333)
163 PRK06718 precorrin-2 dehydroge 60.1 39 0.00084 28.1 6.7 73 88-177 70-142 (202)
164 TIGR03407 urea_ABC_UrtA urea A 60.0 13 0.00028 32.7 4.0 54 62-117 42-95 (359)
165 cd06278 PBP1_LacI_like_2 Ligan 59.8 89 0.0019 25.0 9.1 80 80-163 46-126 (266)
166 TIGR02482 PFKA_ATP 6-phosphofr 59.8 21 0.00046 31.9 5.4 45 74-120 77-121 (301)
167 TIGR00732 dprA DNA protecting 59.8 18 0.00039 30.7 4.8 36 88-123 155-190 (220)
168 cd06322 PBP1_ABC_sugar_binding 59.2 94 0.002 25.1 9.3 81 34-123 8-89 (267)
169 COG0205 PfkA 6-phosphofructoki 59.2 21 0.00046 32.8 5.4 49 75-127 81-129 (347)
170 TIGR01470 cysG_Nterm siroheme 58.0 54 0.0012 27.4 7.3 74 88-177 69-142 (205)
171 cd06334 PBP1_ABC_ligand_bindin 58.0 14 0.0003 32.6 3.9 56 63-121 42-97 (351)
172 cd06267 PBP1_LacI_sugar_bindin 57.9 92 0.002 24.6 13.2 136 27-177 2-144 (264)
173 PRK10423 transcriptional repre 57.9 1.1E+02 0.0025 25.7 12.0 141 25-177 57-202 (327)
174 cd01542 PBP1_TreR_like Ligand- 57.8 97 0.0021 24.8 12.7 85 27-123 2-87 (259)
175 PTZ00409 Sir2 (Silent Informat 57.7 34 0.00074 30.1 6.3 58 63-123 177-235 (271)
176 PF00365 PFK: Phosphofructokin 57.6 9.2 0.0002 33.7 2.7 44 75-120 79-122 (282)
177 PRK15408 autoinducer 2-binding 57.4 1.1E+02 0.0023 27.1 9.5 130 23-164 22-160 (336)
178 cd06358 PBP1_NHase Type I peri 57.4 14 0.00029 31.8 3.7 113 62-177 41-158 (333)
179 PF01380 SIS: SIS domain SIS d 57.1 20 0.00044 26.2 4.2 54 70-125 36-91 (131)
180 PRK13601 putative L7Ae-like ri 56.7 19 0.00042 26.3 3.9 44 84-127 20-63 (82)
181 cd05014 SIS_Kpsf KpsF-like pro 56.3 26 0.00057 25.8 4.7 39 87-125 46-85 (128)
182 cd06381 PBP1_iGluR_delta_like 56.3 15 0.00033 33.0 3.9 55 64-121 39-93 (363)
183 PRK15395 methyl-galactoside AB 56.0 1.2E+02 0.0026 26.3 9.4 92 23-123 23-115 (330)
184 cd06294 PBP1_ycjW_transcriptio 55.9 1.1E+02 0.0023 24.7 12.6 84 75-163 46-133 (270)
185 PRK09526 lacI lac repressor; R 55.5 1.3E+02 0.0028 25.6 11.9 126 26-162 65-191 (342)
186 cd03145 GAT1_cyanophycinase Ty 55.2 26 0.00056 29.3 5.0 32 76-113 73-104 (217)
187 cd08176 LPO Lactadehyde:propan 55.2 61 0.0013 29.2 7.7 77 25-113 29-110 (377)
188 TIGR03863 PQQ_ABC_bind ABC tra 55.2 18 0.00039 32.3 4.2 111 63-177 36-154 (347)
189 cd06269 PBP1_glutamate_recepto 55.1 30 0.00064 27.9 5.2 60 63-123 42-104 (298)
190 cd01545 PBP1_SalR Ligand-bindi 55.1 1.1E+02 0.0024 24.6 9.4 81 77-161 44-127 (270)
191 cd06374 PBP1_mGluR_groupI Liga 55.0 19 0.00042 33.0 4.5 28 90-117 117-144 (472)
192 cd01407 SIR2-fam SIR2 family o 54.7 33 0.00071 28.7 5.5 57 63-123 146-203 (218)
193 cd08187 BDH Butanol dehydrogen 54.7 66 0.0014 29.1 7.8 77 25-111 29-109 (382)
194 TIGR03590 PseG pseudaminic aci 54.3 13 0.00029 32.0 3.1 24 90-113 172-196 (279)
195 cd06295 PBP1_CelR Ligand bindi 54.0 1.2E+02 0.0026 24.7 9.7 79 79-161 55-134 (275)
196 cd06360 PBP1_alkylbenzenes_lik 54.0 33 0.00071 29.0 5.5 112 63-177 40-160 (336)
197 cd05710 SIS_1 A subgroup of th 53.9 48 0.001 24.8 5.8 39 87-125 46-85 (120)
198 PRK03202 6-phosphofructokinase 53.8 25 0.00054 31.7 4.9 43 74-120 79-122 (320)
199 PRK11337 DNA-binding transcrip 53.5 64 0.0014 27.6 7.3 57 69-126 169-226 (292)
200 cd06332 PBP1_aromatic_compound 53.4 28 0.0006 29.3 4.9 58 63-123 40-98 (333)
201 cd08188 Fe-ADH4 Iron-containin 53.1 90 0.0019 28.2 8.4 79 25-113 29-110 (377)
202 cd06271 PBP1_AglR_RafR_like Li 52.9 1.2E+02 0.0026 24.3 10.1 97 77-177 47-148 (268)
203 PRK13937 phosphoheptose isomer 52.9 45 0.00097 27.2 5.9 39 87-125 105-144 (188)
204 TIGR01668 YqeG_hyp_ppase HAD s 52.9 34 0.00074 27.2 5.1 78 81-178 74-156 (170)
205 cd08186 Fe-ADH8 Iron-containin 52.8 58 0.0013 29.5 7.2 78 25-112 27-108 (383)
206 cd03128 GAT_1 Type 1 glutamine 52.6 34 0.00073 21.5 4.2 18 87-104 45-62 (92)
207 PRK00002 aroB 3-dehydroquinate 52.6 72 0.0016 28.6 7.7 92 25-123 32-127 (358)
208 cd01538 PBP1_ABC_xylose_bindin 52.3 1.4E+02 0.003 24.9 13.5 87 27-123 2-89 (288)
209 PRK13936 phosphoheptose isomer 52.2 42 0.00091 27.6 5.7 38 87-124 110-148 (197)
210 PRK05569 flavodoxin; Provision 52.1 69 0.0015 24.2 6.5 21 91-112 4-24 (141)
211 PRK14987 gluconate operon tran 52.0 1.5E+02 0.0032 25.2 11.1 123 25-162 64-190 (331)
212 PRK13938 phosphoheptose isomer 51.8 42 0.00091 28.0 5.7 46 77-125 105-151 (196)
213 PRK11303 DNA-binding transcrip 51.6 1.5E+02 0.0032 25.0 13.4 125 25-161 62-188 (328)
214 PF07085 DRTGG: DRTGG domain; 51.5 29 0.00063 25.4 4.2 44 75-120 48-91 (105)
215 PTZ00286 6-phospho-1-fructokin 51.2 61 0.0013 30.9 7.2 53 75-127 163-216 (459)
216 PRK01215 competence damage-ind 51.0 30 0.00065 30.3 4.8 66 100-177 22-89 (264)
217 cd01541 PBP1_AraR Ligand-bindi 50.8 93 0.002 25.3 7.5 85 27-123 2-92 (273)
218 PRK10936 TMAO reductase system 50.7 1.7E+02 0.0037 25.5 10.2 103 9-122 28-136 (343)
219 PTZ00287 6-phosphofructokinase 50.7 24 0.00051 38.1 4.7 53 75-127 258-311 (1419)
220 cd04795 SIS SIS domain. SIS (S 50.3 37 0.00081 23.0 4.4 35 87-121 46-81 (87)
221 cd06333 PBP1_ABC-type_HAAT_lik 50.3 51 0.0011 27.8 6.0 112 63-176 41-158 (312)
222 PRK10624 L-1,2-propanediol oxi 50.0 67 0.0014 29.1 7.1 78 25-112 31-111 (382)
223 PTZ00408 NAD-dependent deacety 50.0 39 0.00086 29.1 5.4 45 79-124 164-209 (242)
224 cd06380 PBP1_iGluR_AMPA N-term 49.8 23 0.0005 31.1 4.0 46 70-118 45-90 (382)
225 cd08180 PDD 1,3-propanediol de 49.7 1.1E+02 0.0024 27.1 8.2 88 25-123 23-118 (332)
226 cd06362 PBP1_mGluR Ligand bind 49.6 21 0.00046 32.2 3.8 29 89-117 102-130 (452)
227 cd06368 PBP1_iGluR_non_NMDA_li 49.5 38 0.00082 28.6 5.1 47 71-120 46-92 (324)
228 PF01248 Ribosomal_L7Ae: Ribos 49.3 17 0.00038 26.0 2.6 44 84-127 27-71 (95)
229 cd06279 PBP1_LacI_like_3 Ligan 48.7 1.5E+02 0.0033 24.4 11.8 78 80-162 48-126 (283)
230 cd02201 FtsZ_type1 FtsZ is a G 48.5 62 0.0014 28.5 6.5 46 76-122 73-122 (304)
231 cd06284 PBP1_LacI_like_6 Ligan 48.4 1.4E+02 0.003 23.9 12.3 137 27-177 2-143 (267)
232 cd05017 SIS_PGI_PMI_1 The memb 48.1 35 0.00075 25.4 4.2 41 87-127 42-83 (119)
233 PF00465 Fe-ADH: Iron-containi 48.1 53 0.0012 29.3 6.1 77 26-113 23-103 (366)
234 TIGR03127 RuMP_HxlB 6-phospho 47.9 70 0.0015 25.3 6.2 35 88-122 29-64 (179)
235 cd06293 PBP1_LacI_like_11 Liga 47.9 1.5E+02 0.0032 24.0 12.4 95 79-177 46-144 (269)
236 PRK04322 peptidyl-tRNA hydrola 47.8 51 0.0011 25.4 5.1 63 91-175 48-110 (113)
237 cd08173 Gro1PDH Sn-glycerol-1- 47.1 1.1E+02 0.0024 27.0 8.0 86 25-123 26-111 (339)
238 PRK01018 50S ribosomal protein 46.9 54 0.0012 24.4 5.1 40 87-127 31-72 (99)
239 PF02310 B12-binding: B12 bind 46.9 78 0.0017 23.0 5.9 46 63-108 53-100 (121)
240 PRK10703 DNA-binding transcrip 46.3 1.9E+02 0.004 24.7 12.4 123 25-162 60-188 (341)
241 PF06722 DUF1205: Protein of u 46.2 11 0.00024 28.3 1.2 49 132-181 19-76 (97)
242 PRK05333 NAD-dependent deacety 46.0 51 0.0011 28.9 5.5 45 76-122 204-249 (285)
243 cd02191 FtsZ FtsZ is a GTPase 45.7 72 0.0016 28.4 6.5 46 76-122 73-122 (303)
244 cd08185 Fe-ADH1 Iron-containin 45.5 1.5E+02 0.0032 26.8 8.5 79 25-113 26-108 (380)
245 cd08177 MAR Maleylacetate redu 45.5 70 0.0015 28.4 6.4 44 78-123 67-110 (337)
246 cd06351 PBP1_iGluR_N_LIVBP_lik 45.4 46 0.001 27.7 5.0 46 79-125 53-98 (328)
247 cd06285 PBP1_LacI_like_7 Ligan 45.3 1.6E+02 0.0035 23.7 12.1 122 27-163 2-125 (265)
248 cd06364 PBP1_CaSR Ligand-bindi 45.2 27 0.00058 32.9 3.8 55 63-118 75-146 (510)
249 cd08190 HOT Hydroxyacid-oxoaci 45.1 1.1E+02 0.0024 28.1 7.8 79 25-113 24-105 (414)
250 PF08485 Polysacc_syn_2C: Poly 44.9 6.6 0.00014 26.4 -0.2 12 95-106 21-32 (48)
251 PRK07283 hypothetical protein; 44.7 61 0.0013 24.0 5.0 40 87-127 33-73 (98)
252 cd01544 PBP1_GalR Ligand-bindi 44.5 1.7E+02 0.0038 23.8 11.5 72 84-161 49-121 (270)
253 cd00764 Eukaryotic_PFK Phospho 44.3 68 0.0015 32.5 6.7 53 73-127 463-519 (762)
254 cd05006 SIS_GmhA Phosphoheptos 44.2 1.6E+02 0.0034 23.3 8.9 68 87-176 100-168 (177)
255 cd05013 SIS_RpiR RpiR-like pro 44.0 89 0.0019 22.6 5.8 46 79-126 5-51 (139)
256 cd06373 PBP1_NPR_like Ligand b 43.8 39 0.00084 29.9 4.5 54 63-118 44-101 (396)
257 cd06317 PBP1_ABC_sugar_binding 43.5 1.7E+02 0.0038 23.5 9.6 87 27-123 2-90 (275)
258 PF01513 NAD_kinase: ATP-NAD k 43.5 23 0.00051 30.7 3.0 24 26-49 1-26 (285)
259 cd08175 G1PDH Glycerol-1-phosp 43.4 1.2E+02 0.0026 26.9 7.6 41 80-123 73-113 (348)
260 cd06283 PBP1_RegR_EndR_KdgR_li 43.3 1.7E+02 0.0037 23.4 13.0 95 79-177 46-145 (267)
261 cd08182 HEPD Hydroxyethylphosp 42.9 1.8E+02 0.0039 26.0 8.6 77 25-113 24-102 (367)
262 TIGR03127 RuMP_HxlB 6-phospho 42.7 51 0.0011 26.1 4.6 39 87-125 71-110 (179)
263 TIGR02667 moaB_proteo molybden 42.6 38 0.00083 27.3 3.9 73 92-175 9-88 (163)
264 TIGR02637 RhaS rhamnose ABC tr 42.5 2E+02 0.0044 24.0 9.4 47 76-123 43-90 (302)
265 PTZ00365 60S ribosomal protein 42.3 51 0.0011 29.5 4.9 69 91-177 150-221 (266)
266 cd08189 Fe-ADH5 Iron-containin 42.1 1.9E+02 0.0041 26.0 8.7 79 25-113 27-108 (374)
267 TIGR02955 TMAO_TorT TMAO reduc 42.0 2.1E+02 0.0045 24.0 8.5 89 26-123 1-90 (295)
268 PF13692 Glyco_trans_1_4: Glyc 41.9 77 0.0017 23.0 5.2 72 80-176 63-134 (135)
269 cd05008 SIS_GlmS_GlmD_1 SIS (S 41.8 60 0.0013 23.8 4.6 38 87-124 45-83 (126)
270 PRK15027 xylulokinase; Provisi 41.7 1.6E+02 0.0035 27.3 8.4 53 68-123 367-420 (484)
271 TIGR01752 flav_long flavodoxin 41.7 1.2E+02 0.0027 23.9 6.7 21 91-112 2-22 (167)
272 cd06386 PBP1_NPR_C_like Ligand 41.7 99 0.0021 27.5 6.8 53 63-118 43-95 (387)
273 PRK09190 hypothetical protein; 41.4 1.6E+02 0.0035 25.3 7.7 68 87-178 126-201 (220)
274 PF00117 GATase: Glutamine ami 41.4 33 0.00072 27.3 3.4 40 87-160 41-81 (192)
275 PTZ00222 60S ribosomal protein 41.4 1.4E+02 0.0029 26.7 7.4 69 91-177 150-221 (263)
276 TIGR01357 aroB 3-dehydroquinat 41.3 1.8E+02 0.0039 25.7 8.4 34 89-122 82-115 (344)
277 PF03358 FMN_red: NADPH-depend 41.3 35 0.00076 26.0 3.4 30 91-120 3-37 (152)
278 cd06297 PBP1_LacI_like_12 Liga 41.2 2E+02 0.0043 23.5 8.9 45 76-123 42-87 (269)
279 cd01408 SIRT1 SIRT1: Eukaryoti 41.1 72 0.0016 27.2 5.6 44 77-122 165-209 (235)
280 PF09152 DUF1937: Domain of un 41.1 31 0.00066 27.1 3.0 37 83-120 75-114 (116)
281 cd06384 PBP1_NPR_B Ligand-bind 41.0 51 0.0011 29.3 4.8 53 63-118 44-101 (399)
282 PF01981 PTH2: Peptidyl-tRNA h 40.8 46 0.00099 25.2 3.9 62 90-175 50-113 (116)
283 PF02350 Epimerase_2: UDP-N-ac 40.8 34 0.00075 30.7 3.7 80 69-180 47-127 (346)
284 KOG3387 60S ribosomal protein 40.8 77 0.0017 25.5 5.2 86 79-177 41-128 (131)
285 PF02782 FGGY_C: FGGY family o 40.7 1.6E+02 0.0035 23.1 7.3 53 68-122 129-182 (198)
286 cd05005 SIS_PHI Hexulose-6-pho 40.6 58 0.0013 25.9 4.7 39 87-125 74-113 (179)
287 cd00636 TroA-like Helical back 40.0 71 0.0015 22.7 4.7 42 79-124 52-93 (148)
288 TIGR00147 lipid kinase, YegS/R 39.9 95 0.0021 26.6 6.2 17 87-103 56-72 (293)
289 PF09825 BPL_N: Biotin-protein 39.8 70 0.0015 29.6 5.6 91 26-161 2-92 (367)
290 PRK06547 hypothetical protein; 39.7 73 0.0016 25.8 5.2 44 78-121 4-47 (172)
291 PRK10339 DNA-binding transcrip 39.5 1.7E+02 0.0037 24.8 7.7 72 87-163 113-185 (327)
292 cd06325 PBP1_ABC_uncharacteriz 38.9 2.1E+02 0.0046 23.2 8.1 89 26-123 1-90 (281)
293 PRK09417 mogA molybdenum cofac 38.6 49 0.0011 27.8 4.0 78 91-177 7-93 (193)
294 KOG1468 Predicted translation 38.5 1.1E+02 0.0024 28.0 6.5 105 72-182 216-344 (354)
295 COG2515 Acd 1-aminocyclopropan 38.5 89 0.0019 28.7 5.9 42 82-124 58-100 (323)
296 PRK11557 putative DNA-binding 38.4 1.9E+02 0.0041 24.5 7.7 39 87-125 174-213 (278)
297 cd06290 PBP1_LacI_like_9 Ligan 38.4 2.1E+02 0.0045 23.0 12.4 121 27-161 2-124 (265)
298 cd01411 SIR2H SIR2H: Uncharact 38.4 83 0.0018 26.6 5.5 53 64-122 150-205 (225)
299 TIGR01234 L-ribulokinase L-rib 38.2 1.2E+02 0.0025 28.8 6.9 55 68-124 416-471 (536)
300 cd03011 TlpA_like_ScsD_MtbDsbE 38.1 1.5E+02 0.0033 21.3 6.6 96 65-171 26-122 (123)
301 cd08193 HVD 5-hydroxyvalerate 38.0 2E+02 0.0044 25.8 8.2 77 25-111 27-106 (376)
302 cd06389 PBP1_iGluR_AMPA_GluR2 37.9 39 0.00086 30.1 3.6 40 79-120 48-87 (370)
303 cd07392 MPP_PAE1087 Pyrobaculu 37.7 68 0.0015 24.7 4.5 41 87-127 22-65 (188)
304 TIGR02478 6PF1K_euk 6-phosphof 37.3 59 0.0013 32.8 5.1 47 74-120 464-514 (745)
305 cd07388 MPP_Tt1561 Thermus the 37.3 78 0.0017 27.0 5.2 38 88-125 31-73 (224)
306 KOG2244 Highly conserved prote 36.7 1.8E+02 0.0039 29.1 8.0 41 87-127 698-743 (786)
307 TIGR02122 TRAP_TAXI TRAP trans 36.7 2.6E+02 0.0056 23.5 8.8 25 154-178 257-281 (320)
308 cd06361 PBP1_GPC6A_like Ligand 36.5 58 0.0013 29.5 4.5 54 63-117 60-130 (403)
309 cd03129 GAT1_Peptidase_E_like 36.5 21 0.00044 29.4 1.5 30 78-113 72-101 (210)
310 COG1597 LCB5 Sphingosine kinas 36.5 60 0.0013 28.7 4.5 32 69-100 36-70 (301)
311 PRK03501 ppnK inorganic polyph 36.4 89 0.0019 27.4 5.5 11 88-98 39-49 (264)
312 cd06277 PBP1_LacI_like_1 Ligan 36.3 2.3E+02 0.005 22.9 12.0 138 27-177 2-146 (268)
313 KOG2531 Sugar (pentulose and h 35.9 61 0.0013 31.5 4.6 38 88-126 442-479 (545)
314 PF02142 MGS: MGS-like domain 35.9 32 0.0007 24.8 2.3 41 77-117 49-93 (95)
315 cd06335 PBP1_ABC_ligand_bindin 35.6 2E+02 0.0044 24.8 7.6 85 25-120 139-223 (347)
316 PF02608 Bmp: Basic membrane p 35.5 97 0.0021 27.0 5.6 89 73-166 46-143 (306)
317 cd06385 PBP1_NPR_A Ligand-bind 35.5 44 0.00094 29.7 3.5 54 63-118 44-102 (405)
318 cd00544 CobU Adenosylcobinamid 35.3 67 0.0015 26.0 4.3 38 91-128 1-38 (169)
319 PF04230 PS_pyruv_trans: Polys 35.3 70 0.0015 25.3 4.4 31 88-118 63-103 (286)
320 TIGR01314 gntK_FGGY gluconate 35.2 2.5E+02 0.0055 26.1 8.7 55 68-124 381-436 (505)
321 COG0683 LivK ABC-type branched 35.2 39 0.00085 30.0 3.2 117 62-180 52-177 (366)
322 cd01465 vWA_subgroup VWA subgr 34.8 57 0.0012 24.9 3.6 29 99-127 139-167 (170)
323 cd06259 YdcF-like YdcF-like. Y 34.8 1.7E+02 0.0036 22.2 6.3 52 72-123 17-75 (150)
324 cd02407 PTH2_family Peptidyl-t 34.8 95 0.0021 23.9 4.8 61 91-175 50-112 (115)
325 PLN02834 3-dehydroquinate synt 34.6 2.2E+02 0.0047 26.7 8.1 94 25-123 101-198 (433)
326 cd06307 PBP1_uncharacterized_s 34.3 2.5E+02 0.0055 22.8 9.7 88 26-122 1-91 (275)
327 cd02429 PTH2_like Peptidyl-tRN 34.3 97 0.0021 24.1 4.8 58 91-175 56-113 (116)
328 cd02065 B12-binding_like B12 b 34.1 1.2E+02 0.0026 21.9 5.2 17 90-106 80-96 (125)
329 PF00994 MoCF_biosynth: Probab 34.0 70 0.0015 24.6 4.1 44 70-114 38-82 (144)
330 cd08172 GlyDH-like1 Glycerol d 33.8 1.5E+02 0.0032 26.4 6.6 86 25-123 24-109 (347)
331 cd06388 PBP1_iGluR_AMPA_GluR4 33.6 54 0.0012 29.4 3.8 92 80-177 55-149 (371)
332 COG0761 lytB 4-Hydroxy-3-methy 33.4 1.2E+02 0.0026 27.5 5.9 116 25-178 67-183 (294)
333 PF00205 TPP_enzyme_M: Thiamin 33.3 1.2E+02 0.0027 22.8 5.3 47 79-126 3-51 (137)
334 cd01451 vWA_Magnesium_chelatas 33.2 1.3E+02 0.0028 23.8 5.5 24 101-124 145-168 (178)
335 PRK05800 cobU adenosylcobinami 33.2 77 0.0017 25.6 4.3 37 91-127 3-39 (170)
336 cd02985 TRX_CDSP32 TRX family, 33.2 1.8E+02 0.004 20.8 7.3 78 64-173 20-101 (103)
337 cd06326 PBP1_STKc_like Type I 33.2 99 0.0021 26.1 5.2 112 63-177 43-162 (336)
338 PF00205 TPP_enzyme_M: Thiamin 33.1 40 0.00086 25.5 2.5 26 78-104 68-94 (137)
339 PF01202 SKI: Shikimate kinase 33.1 38 0.00082 26.5 2.4 93 78-176 52-158 (158)
340 COG1570 XseA Exonuclease VII, 33.1 54 0.0012 31.2 3.8 36 16-53 121-162 (440)
341 PF13788 DUF4180: Domain of un 32.8 41 0.0009 26.2 2.5 98 22-127 3-110 (113)
342 PF13580 SIS_2: SIS domain; PD 32.8 88 0.0019 24.1 4.4 32 87-118 102-134 (138)
343 PRK14021 bifunctional shikimat 32.7 2.1E+02 0.0046 27.4 7.8 41 88-128 269-311 (542)
344 PLN02821 1-hydroxy-2-methyl-2- 32.6 1.4E+02 0.003 28.7 6.5 109 64-177 201-323 (460)
345 cd06291 PBP1_Qymf_like Ligand 32.4 2.7E+02 0.0058 22.4 10.5 119 27-162 2-122 (265)
346 cd06365 PBP1_Pheromone_recepto 32.3 79 0.0017 29.2 4.7 54 64-118 66-131 (469)
347 TIGR01211 ELP3 histone acetylt 32.2 77 0.0017 30.6 4.7 90 73-179 119-216 (522)
348 PRK13141 hisH imidazole glycer 32.1 1.3E+02 0.0027 24.6 5.5 35 93-127 2-36 (205)
349 cd06287 PBP1_LacI_like_8 Ligan 32.1 2.9E+02 0.0064 22.8 9.0 73 86-161 54-127 (269)
350 PRK09330 cell division protein 32.1 1.4E+02 0.003 27.8 6.3 45 77-122 87-135 (384)
351 TIGR01312 XylB D-xylulose kina 32.0 3E+02 0.0065 25.1 8.4 54 68-123 370-424 (481)
352 PRK06203 aroB 3-dehydroquinate 31.9 2.9E+02 0.0063 25.4 8.3 41 88-128 111-153 (389)
353 COG2087 CobU Adenosyl cobinami 31.7 71 0.0015 26.9 3.9 38 91-128 2-39 (175)
354 PRK04169 geranylgeranylglycery 31.7 3.4E+02 0.0074 23.4 8.9 76 83-178 27-105 (232)
355 cd03130 GATase1_CobB Type 1 gl 31.6 43 0.00094 27.5 2.7 22 83-106 37-58 (198)
356 TIGR02478 6PF1K_euk 6-phosphof 31.6 87 0.0019 31.6 5.2 32 74-105 80-111 (745)
357 PRK00047 glpK glycerol kinase; 31.5 2.6E+02 0.0057 26.0 8.1 55 68-124 383-438 (498)
358 cd08195 DHQS Dehydroquinate sy 31.4 3.5E+02 0.0076 24.0 8.6 35 89-123 86-120 (345)
359 PRK14077 pnk inorganic polypho 31.4 1.2E+02 0.0026 26.9 5.5 16 82-98 59-74 (287)
360 cd07364 PCA_45_Dioxygenase_B S 31.1 2.1E+02 0.0045 25.2 7.0 67 84-177 44-110 (277)
361 PRK00025 lpxB lipid-A-disaccha 30.9 1.4E+02 0.003 26.0 5.8 35 87-123 84-118 (380)
362 cd08178 AAD_C C-terminal alcoh 30.8 1.8E+02 0.0038 26.5 6.7 75 25-110 22-100 (398)
363 PTZ00294 glycerol kinase-like 30.6 1.4E+02 0.0031 27.9 6.2 55 68-124 386-441 (504)
364 cd05013 SIS_RpiR RpiR-like pro 30.6 1.2E+02 0.0026 21.9 4.6 40 87-126 59-99 (139)
365 cd07402 MPP_GpdQ Enterobacter 30.6 1.2E+02 0.0027 24.6 5.2 39 88-126 40-82 (240)
366 PF13941 MutL: MutL protein 30.5 45 0.00097 31.8 2.8 49 64-114 102-150 (457)
367 PRK05665 amidotransferase; Pro 30.4 68 0.0015 27.5 3.7 16 88-103 57-72 (240)
368 PF04122 CW_binding_2: Putativ 30.4 1.7E+02 0.0037 20.7 5.3 39 88-128 24-62 (92)
369 PRK14329 (dimethylallyl)adenos 30.3 92 0.002 29.2 4.9 61 26-93 62-123 (467)
370 cd08169 DHQ-like Dehydroquinat 30.1 2.8E+02 0.0062 24.8 7.8 90 25-122 24-117 (344)
371 TIGR00173 menD 2-succinyl-5-en 30.1 1.5E+02 0.0034 27.1 6.2 38 88-127 274-312 (432)
372 PRK00278 trpC indole-3-glycero 30.1 1.4E+02 0.003 25.9 5.6 39 88-126 133-173 (260)
373 PRK11543 gutQ D-arabinose 5-ph 30.1 3.4E+02 0.0075 23.4 8.2 55 67-125 24-79 (321)
374 PF14639 YqgF: Holliday-juncti 29.7 54 0.0012 26.3 2.8 25 87-113 62-86 (150)
375 cd08179 NADPH_BDH NADPH-depend 29.6 2.5E+02 0.0054 25.3 7.4 79 25-113 24-106 (375)
376 PRK09423 gldA glycerol dehydro 29.5 2.7E+02 0.0059 24.9 7.6 44 79-124 75-118 (366)
377 PRK06242 flavodoxin; Provision 29.4 2E+02 0.0043 21.8 5.9 87 91-178 3-101 (150)
378 TIGR01769 GGGP geranylgeranylg 29.4 3.5E+02 0.0076 22.9 9.7 74 80-175 16-95 (205)
379 cd00764 Eukaryotic_PFK Phospho 29.4 1.2E+02 0.0026 30.9 5.7 34 74-107 83-116 (762)
380 PF01995 DUF128: Domain of unk 29.3 48 0.001 28.9 2.6 80 12-97 11-100 (236)
381 cd08199 EEVS 2-epi-5-epi-valio 29.2 4E+02 0.0086 24.1 8.6 92 24-122 26-122 (354)
382 PF00701 DHDPS: Dihydrodipicol 29.1 1.5E+02 0.0032 25.5 5.6 34 88-121 70-103 (289)
383 PRK08250 glutamine amidotransf 29.0 92 0.002 26.4 4.3 16 87-102 44-59 (235)
384 PRK15482 transcriptional regul 28.7 2.7E+02 0.0059 23.8 7.2 39 87-125 181-220 (285)
385 cd08181 PPD-like 1,3-propanedi 28.5 2.9E+02 0.0063 24.7 7.6 76 25-111 26-106 (357)
386 cd01141 TroA_d Periplasmic bin 28.4 1.3E+02 0.0029 23.5 4.9 41 79-122 60-100 (186)
387 PRK02947 hypothetical protein; 28.4 1E+02 0.0022 26.4 4.4 38 87-124 105-143 (246)
388 PF15088 NADH_dh_m_C1: NADH de 28.3 32 0.00069 23.1 1.0 18 145-167 12-29 (49)
389 TIGR01319 glmL_fam conserved h 28.3 59 0.0013 31.2 3.2 48 64-113 98-145 (463)
390 TIGR00888 guaA_Nterm GMP synth 28.2 1.1E+02 0.0023 24.6 4.4 24 97-120 5-28 (188)
391 cd00885 cinA Competence-damage 28.2 60 0.0013 26.4 2.9 68 99-177 17-85 (170)
392 cd03134 GATase1_PfpI_like A ty 28.1 81 0.0017 24.3 3.5 12 88-99 62-73 (165)
393 COG0420 SbcD DNA repair exonuc 28.0 1.2E+02 0.0026 27.2 5.1 41 87-127 39-88 (390)
394 cd07396 MPP_Nbla03831 Homo sap 28.0 1.2E+02 0.0026 25.8 4.8 49 79-127 31-86 (267)
395 TIGR00177 molyb_syn molybdenum 27.8 1E+02 0.0022 24.0 4.0 46 68-114 46-92 (144)
396 COG3980 spsG Spore coat polysa 27.8 57 0.0012 29.8 2.9 66 81-168 178-243 (318)
397 TIGR03025 EPS_sugtrans exopoly 27.8 4.7E+02 0.01 23.9 9.1 42 87-128 187-229 (445)
398 PRK01077 cobyrinic acid a,c-di 27.7 89 0.0019 29.1 4.3 44 80-124 74-124 (451)
399 PRK11302 DNA-binding transcrip 27.7 3.2E+02 0.0069 23.0 7.4 36 87-122 174-210 (284)
400 cd08192 Fe-ADH7 Iron-containin 27.7 3E+02 0.0064 24.6 7.5 77 25-112 25-105 (370)
401 PF02283 CobU: Cobinamide kina 27.7 74 0.0016 25.8 3.3 36 92-127 1-36 (167)
402 COG3962 Acetolactate synthase 27.7 3.8E+02 0.0081 26.5 8.4 132 2-170 158-295 (617)
403 cd08198 DHQS-like2 Dehydroquin 27.6 3.8E+02 0.0083 24.7 8.3 102 25-128 31-141 (369)
404 cd08171 GlyDH-like2 Glycerol d 27.6 3.2E+02 0.007 24.2 7.7 35 87-123 77-111 (345)
405 COG1058 CinA Predicted nucleot 27.4 1.8E+02 0.0038 25.7 5.8 75 91-176 5-86 (255)
406 PRK13833 conjugal transfer pro 27.3 2.7E+02 0.0058 25.2 7.1 47 81-128 137-188 (323)
407 PF04392 ABC_sub_bind: ABC tra 27.2 71 0.0015 27.4 3.3 47 73-120 170-217 (294)
408 PF13278 DUF4066: Putative ami 27.1 1E+02 0.0022 23.9 4.0 13 87-99 60-72 (166)
409 PRK10376 putative oxidoreducta 27.1 64 0.0014 27.9 3.0 31 143-173 240-270 (290)
410 TIGR01753 flav_short flavodoxi 26.9 1.6E+02 0.0035 21.7 4.9 20 92-112 2-21 (140)
411 cd06375 PBP1_mGluR_groupII Lig 26.9 1.2E+02 0.0025 28.1 4.9 28 90-117 105-132 (458)
412 PRK06719 precorrin-2 dehydroge 26.8 1.8E+02 0.0039 23.1 5.4 69 88-177 70-142 (157)
413 PRK07710 acetolactate synthase 26.8 1.9E+02 0.0042 27.5 6.4 41 78-119 206-248 (571)
414 cd06393 PBP1_iGluR_Kainate_Glu 26.8 91 0.002 27.6 4.0 31 90-120 72-102 (384)
415 PRK10637 cysG siroheme synthas 26.8 2.6E+02 0.0057 26.1 7.2 74 88-177 72-145 (457)
416 PRK07714 hypothetical protein; 26.7 1.4E+02 0.003 22.0 4.4 40 87-127 33-73 (100)
417 TIGR02782 TrbB_P P-type conjug 26.7 4.4E+02 0.0096 23.2 8.9 50 78-128 122-176 (299)
418 cd01744 GATase1_CPSase Small c 26.6 1.2E+02 0.0026 24.3 4.3 33 88-120 39-75 (178)
419 PRK03604 moaC bifunctional mol 26.5 1E+02 0.0022 27.8 4.3 76 91-177 159-242 (312)
420 PRK11242 DNA-binding transcrip 26.4 1.1E+02 0.0024 25.4 4.2 63 25-101 91-153 (296)
421 PRK11543 gutQ D-arabinose 5-ph 26.3 1.2E+02 0.0027 26.1 4.7 39 87-125 88-127 (321)
422 PHA03025 hypothetical protein; 26.2 71 0.0015 22.6 2.5 15 100-114 24-38 (68)
423 PRK00758 GMP synthase subunit 26.2 94 0.002 24.9 3.7 31 92-122 1-31 (184)
424 COG0378 HypB Ni2+-binding GTPa 26.1 1.3E+02 0.0027 25.9 4.6 68 91-178 15-93 (202)
425 cd06376 PBP1_mGluR_groupIII Li 26.1 1.2E+02 0.0026 27.7 4.8 29 90-118 103-131 (463)
426 cd01149 HutB Hemin binding pro 26.1 1.4E+02 0.0031 24.2 4.9 42 80-124 50-91 (235)
427 PF13415 Kelch_3: Galactose ox 26.0 49 0.0011 20.8 1.6 11 90-100 2-12 (49)
428 TIGR00215 lpxB lipid-A-disacch 25.8 1.8E+02 0.0038 26.2 5.8 40 79-120 80-119 (385)
429 PRK13018 cell division protein 25.8 2.2E+02 0.0047 26.5 6.4 44 75-119 100-147 (378)
430 TIGR00065 ftsZ cell division p 25.7 2.2E+02 0.0047 26.0 6.3 46 76-122 90-139 (349)
431 PRK13669 hypothetical protein; 25.6 57 0.0012 23.9 2.1 18 160-177 57-74 (78)
432 cd01143 YvrC Periplasmic bindi 25.6 1.5E+02 0.0033 23.0 4.8 41 80-124 52-92 (195)
433 cd06370 PBP1_Speract_GC_like L 25.6 1.2E+02 0.0026 27.0 4.6 51 63-118 45-95 (404)
434 PRK06217 hypothetical protein; 25.6 1.2E+02 0.0025 24.2 4.1 33 91-123 3-35 (183)
435 PF06506 PrpR_N: Propionate ca 25.5 3.5E+02 0.0076 21.6 8.4 74 25-122 78-151 (176)
436 PRK08118 topology modulation p 25.3 1E+02 0.0022 24.5 3.7 33 91-123 3-35 (167)
437 PF13241 NAD_binding_7: Putati 25.0 66 0.0014 23.5 2.4 37 88-125 60-96 (103)
438 cd08170 GlyDH Glycerol dehydro 25.0 4.5E+02 0.0097 23.3 8.1 88 25-123 23-110 (351)
439 cd00758 MoCF_BD MoCF_BD: molyb 24.9 1.1E+02 0.0023 23.4 3.6 36 78-114 49-84 (133)
440 TIGR03061 pip_yhgE_Nterm YhgE/ 24.6 1.5E+02 0.0034 23.2 4.6 63 25-104 44-112 (164)
441 PF13418 Kelch_4: Galactose ox 24.6 28 0.0006 21.6 0.2 13 90-102 13-25 (49)
442 PRK11440 putative hydrolase; P 24.5 72 0.0016 25.6 2.7 21 101-121 35-55 (188)
443 cd06275 PBP1_PurR Ligand-bindi 24.2 3.8E+02 0.0082 21.5 12.9 85 75-162 41-127 (269)
444 PF00070 Pyr_redox: Pyridine n 24.1 1.6E+02 0.0035 20.0 4.1 34 92-127 2-35 (80)
445 PF10881 DUF2726: Protein of u 23.9 3.1E+02 0.0068 20.5 7.4 59 67-125 32-112 (126)
446 TIGR00250 RNAse_H_YqgF RNAse H 23.8 2.3E+02 0.0049 22.0 5.3 42 79-121 38-90 (130)
447 PF02601 Exonuc_VII_L: Exonucl 23.8 3.5E+02 0.0076 23.6 7.1 85 23-117 13-110 (319)
448 cd08196 DHQS-like1 Dehydroquin 23.8 1.5E+02 0.0033 26.8 4.9 41 82-122 67-110 (346)
449 cd00953 KDG_aldolase KDG (2-ke 23.7 2.3E+02 0.005 24.5 5.9 55 33-98 47-101 (279)
450 COG0075 Serine-pyruvate aminot 23.7 2.3E+02 0.005 26.5 6.1 105 12-123 7-112 (383)
451 TIGR01365 serC_2 phosphoserine 23.7 5.2E+02 0.011 23.7 8.4 78 37-121 34-113 (374)
452 cd05005 SIS_PHI Hexulose-6-pho 23.6 3.7E+02 0.008 21.2 7.3 43 78-122 24-67 (179)
453 COG0206 FtsZ Cell division GTP 23.6 2.4E+02 0.0052 25.9 6.1 49 73-122 81-133 (338)
454 cd07397 MPP_DevT Myxococcus xa 23.6 1.8E+02 0.0038 25.3 5.1 38 88-126 25-62 (238)
455 cd03132 GATase1_catalase Type 23.6 80 0.0017 23.9 2.7 132 25-177 2-140 (142)
456 cd07380 MPP_CWF19_N Schizosacc 23.6 1E+02 0.0022 24.7 3.3 39 87-125 25-68 (150)
457 TIGR00288 conserved hypothetic 23.5 3.3E+02 0.0071 22.4 6.4 21 151-171 129-149 (160)
458 PF00781 DAGK_cat: Diacylglyce 23.4 1.7E+02 0.0037 21.9 4.4 37 63-101 30-67 (130)
459 PRK13054 lipid kinase; Reviewe 23.3 1.9E+02 0.0041 25.1 5.3 18 87-104 55-72 (300)
460 PLN03080 Probable beta-xylosid 23.3 1.6E+02 0.0035 29.8 5.4 39 79-118 479-533 (779)
461 cd08425 PBP2_CynR The C-termin 23.2 1.4E+02 0.0031 22.0 4.0 25 78-102 40-64 (197)
462 cd06374 PBP1_mGluR_groupI Liga 23.1 4.3E+02 0.0092 24.2 7.8 48 76-123 231-280 (472)
463 PF05049 IIGP: Interferon-indu 23.0 1E+02 0.0022 28.7 3.6 41 87-127 113-154 (376)
464 COG0726 CDA1 Predicted xylanas 23.0 87 0.0019 25.2 2.9 31 92-122 69-100 (267)
465 PF00218 IGPS: Indole-3-glycer 22.8 1E+02 0.0022 27.0 3.5 87 26-127 84-172 (254)
466 TIGR01382 PfpI intracellular p 22.7 2E+02 0.0043 22.1 4.8 24 26-49 1-24 (166)
467 cd01741 GATase1_1 Subgroup of 22.5 1.6E+02 0.0034 23.4 4.3 37 88-124 46-91 (188)
468 PRK06934 flavodoxin; Provision 22.5 88 0.0019 26.9 3.0 34 92-125 62-96 (221)
469 PF02146 SIR2: Sir2 family; I 22.5 81 0.0017 25.3 2.6 31 63-97 142-172 (178)
470 TIGR03568 NeuC_NnaA UDP-N-acet 22.4 1.7E+02 0.0038 26.2 5.0 55 69-125 73-128 (365)
471 PRK13152 hisH imidazole glycer 22.4 1.5E+02 0.0032 24.3 4.2 37 92-128 1-37 (201)
472 PRK11148 cyclic 3',5'-adenosin 22.4 1.9E+02 0.0042 24.5 5.1 19 107-125 78-96 (275)
473 PRK07765 para-aminobenzoate sy 22.2 2.1E+02 0.0045 23.9 5.1 34 82-116 41-78 (214)
474 cd06288 PBP1_sucrose_transcrip 22.2 4.1E+02 0.0089 21.2 12.0 123 27-162 2-126 (269)
475 TIGR01293 Kv_beta voltage-depe 22.2 63 0.0014 28.2 2.1 39 145-184 270-311 (317)
476 PTZ00422 glideosome-associated 22.1 4.8E+02 0.01 24.5 7.9 43 83-125 207-259 (394)
477 PRK14106 murD UDP-N-acetylmura 21.8 1.3E+02 0.0029 27.2 4.1 65 87-175 67-133 (450)
478 TIGR03393 indolpyr_decarb indo 21.8 6.5E+02 0.014 23.7 8.9 48 78-126 196-245 (539)
479 PRK13055 putative lipid kinase 21.8 1.4E+02 0.003 26.5 4.2 16 87-102 58-73 (334)
480 cd01749 GATase1_PB Glutamine A 21.7 33 0.00071 27.8 0.2 15 88-102 35-49 (183)
481 COG0381 WecB UDP-N-acetylgluco 21.7 2.4E+02 0.0051 26.5 5.8 55 66-122 69-124 (383)
482 PF00350 Dynamin_N: Dynamin fa 21.6 1.3E+02 0.0028 22.8 3.6 45 76-121 117-165 (168)
483 PRK03170 dihydrodipicolinate s 21.5 1.6E+02 0.0035 25.4 4.5 16 34-49 50-65 (292)
484 cd01742 GATase1_GMP_Synthase T 21.4 1.9E+02 0.0041 22.7 4.5 52 95-164 3-54 (181)
485 smart00864 Tubulin Tubulin/Fts 21.4 3.7E+02 0.008 21.7 6.4 40 76-116 71-114 (192)
486 PF00814 Peptidase_M22: Glycop 21.4 2.2E+02 0.0048 24.6 5.3 50 68-118 195-252 (268)
487 PRK08266 hypothetical protein; 21.4 1.8E+02 0.0038 27.4 5.0 41 78-119 196-236 (542)
488 smart00594 UAS UAS domain. 21.3 3.5E+02 0.0076 20.1 5.8 81 66-170 34-120 (122)
489 TIGR02764 spore_ybaN_pdaB poly 21.3 1.1E+02 0.0024 24.5 3.2 28 95-122 13-41 (191)
490 PRK08527 acetolactate synthase 21.3 2.7E+02 0.0058 26.4 6.3 42 77-119 193-236 (563)
491 cd01745 GATase1_2 Subgroup of 21.3 2.2E+02 0.0048 23.0 5.0 19 82-101 48-66 (189)
492 TIGR03492 conserved hypothetic 21.3 1.8E+02 0.0039 26.5 4.9 42 73-121 79-120 (396)
493 PRK05749 3-deoxy-D-manno-octul 21.3 1.3E+02 0.0028 26.9 4.0 28 89-116 261-288 (425)
494 TIGR00064 ftsY signal recognit 21.3 5.5E+02 0.012 22.3 8.7 20 108-127 148-167 (272)
495 PRK10586 putative oxidoreducta 21.1 2.4E+02 0.0051 25.6 5.6 57 63-123 63-119 (362)
496 TIGR01311 glycerol_kin glycero 21.1 5.2E+02 0.011 24.0 8.0 54 68-123 379-433 (493)
497 cd01748 GATase1_IGP_Synthase T 21.0 2.8E+02 0.006 22.4 5.6 34 94-127 2-35 (198)
498 PF07293 DUF1450: Protein of u 21.0 77 0.0017 23.1 2.0 18 160-177 57-74 (78)
499 PF01041 DegT_DnrJ_EryC1: DegT 21.0 1.3E+02 0.0028 26.6 3.9 39 86-127 111-151 (363)
500 PRK10569 NAD(P)H-dependent FMN 21.0 1.5E+02 0.0033 24.4 4.0 36 91-127 3-43 (191)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=5.6e-62 Score=446.54 Aligned_cols=186 Identities=82% Similarity=1.253 Sum_probs=177.8
Q ss_pred CcHHHHHHHHhhccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH
Q 037064 1 STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA 80 (187)
Q Consensus 1 ~~~~~~~~~~~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a 80 (187)
+++++|+++|++++|++|||+++++||++++||||+.++|++|++.|+++|++++||++...+|.+|||||+||++||+|
T Consensus 275 ~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA 354 (460)
T PLN02821 275 GTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDA 354 (460)
T ss_pred cchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeC
Q 037064 81 VYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAG 160 (187)
Q Consensus 81 v~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAG 160 (187)
+.+|+..++|+||||||+|||||+||+|||++.|+|+|||++++||++.+.|.|++.|+|..++++|||.++.+||||||
T Consensus 355 ~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAG 434 (460)
T PLN02821 355 MYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSG 434 (460)
T ss_pred HHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcccccccccccchhhhhHHHhccCCCEEEEecC
Confidence 99996458999999999999999999999999999999999999999999999999999999999999767999999999
Q ss_pred CCCcHHHHHHHHHHHHhccHhhhhcC
Q 037064 161 ASTPDKAIEGVLKKVFEIKREEALQL 186 (187)
Q Consensus 161 ASTP~~lI~eVi~~l~~~~~~~~~~~ 186 (187)
||||+|+|++|+.+|.+++..+++|+
T Consensus 435 ASTPd~lIeeVi~~l~~~~~~~~~~~ 460 (460)
T PLN02821 435 ASTPDKVVEDVLDKVFDIKREEALQL 460 (460)
T ss_pred CCCCHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999999877776664
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.9e-57 Score=407.61 Aligned_cols=177 Identities=62% Similarity=1.014 Sum_probs=167.9
Q ss_pred cHHHHHHHHhhccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHH
Q 037064 2 TKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAV 81 (187)
Q Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av 81 (187)
++..|+|+|.+++|++|+|+++++|+++++||||+.++|++|++.|+++|+.++++.+...+++++||||+||++||+|+
T Consensus 202 ~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~ 281 (387)
T PRK13371 202 DREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLFERTMLRKYGPANLNEHFLSFNTICDATQERQDAM 281 (387)
T ss_pred chhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCccccccccccCCcchhHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999987777789999999999999999999
Q ss_pred HHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCC
Q 037064 82 YKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
++|+..++|+||||||+|||||+||++||++.|+++||||+++||++.+.|.||++..+..++++||+.++.+|||||||
T Consensus 282 ~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGA 361 (387)
T PRK13371 282 FSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVTENWLPEGPVTVGITSGA 361 (387)
T ss_pred HHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhhhhhhccCCCEEEEecCC
Confidence 99984479999999999999999999999999999999999999999999999999778899999996568899999999
Q ss_pred CCcHHHHHHHHHHHHhc
Q 037064 162 STPDKAIEGVLKKVFEI 178 (187)
Q Consensus 162 STP~~lI~eVi~~l~~~ 178 (187)
|||+|+|++|+.+|.++
T Consensus 362 STP~~lI~eVi~~l~~l 378 (387)
T PRK13371 362 STPDKVVEDVIEKIFAL 378 (387)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999876
No 3
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=3.1e-48 Score=338.73 Aligned_cols=128 Identities=44% Similarity=0.658 Sum_probs=121.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+++++++|||||.++|.+|+++|+.+||+. +++.+|||||||+|||+|+++|| .+||+||||||+|||||+
T Consensus 158 ~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~--------~~~~~~~ICyAT~nRQ~Avk~la-~~~Dl~iVVG~~nSSNs~ 228 (294)
T COG0761 158 DKLAFVTQTTLSVDDTAEIVAALKERFPKI--------EVPPFNDICYATQNRQDAVKELA-PEVDLVIVVGSKNSSNSN 228 (294)
T ss_pred ccEEEEeeeecCHHHHHHHHHHHHHhCccc--------cCCcccccchhhhhHHHHHHHHh-hcCCEEEEECCCCCccHH
Confidence 389999999999999999999999987764 35679999999999999999999 589999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhcc
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIK 179 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~~ 179 (187)
||+|||++.|.++|||++++||++ +|| .+..+||||||||||+|+|++|+.+|+++.
T Consensus 229 rL~eiA~~~g~~aylId~~~ei~~-----------------~w~-~~~~~VGvTAGAStPd~lV~~Vi~~l~~~~ 285 (294)
T COG0761 229 RLAEIAKRHGKPAYLIDDAEEIDP-----------------EWL-KGVKTVGVTAGASTPDWLVQEVIAKLRELG 285 (294)
T ss_pred HHHHHHHHhCCCeEEeCChHhCCH-----------------HHh-cCccEEEEecCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999997 999 689999999999999999999999999875
No 4
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=4e-48 Score=338.39 Aligned_cols=126 Identities=45% Similarity=0.693 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+++++++||||+.++|++|++.|++++|. .+.+++||||+||++||+|+++|| +++|+||||||+|||||+
T Consensus 154 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~--------~~~~~~nTIC~AT~~RQ~a~~~la-~~vD~miVVGg~nSsNT~ 224 (280)
T TIGR00216 154 DLLGVVSQTTLSQEDTKEIVAELKARVPQ--------KEVPVFNTICYATQNRQDAVKELA-PEVDLMIVIGGKNSSNTT 224 (280)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCCC--------cCCCCCCCcccccHHHHHHHHHHH-hhCCEEEEECCCCCchHH
Confidence 68999999999999999999999986544 246789999999999999999999 589999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
||++||++.|+++||||+++||++ +|| .++.+||||||||||+|+|++|+.+|.+
T Consensus 225 rL~ei~~~~~~~t~~Ie~~~el~~-----------------~~l-~~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 225 RLYEIAEEHGPPSYLIETAEELPE-----------------EWL-KGVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred HHHHHHHHhCCCEEEECChHHCCH-----------------HHh-CCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999997 999 6899999999999999999999999975
No 5
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=8.3e-48 Score=336.50 Aligned_cols=131 Identities=43% Similarity=0.611 Sum_probs=108.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 21 DIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 21 ~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nS 100 (187)
..+++|+++++||||+.++|++|++.|+++++... +.++||||+||++||+|+++|| +++|+||||||+||
T Consensus 151 ~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~--------~~~~nTIC~aT~~RQ~a~~~La-~~vD~miVIGg~~S 221 (281)
T PF02401_consen 151 ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELE--------GPVFNTICYATQNRQEAARELA-KEVDAMIVIGGKNS 221 (281)
T ss_dssp GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE---------SCC-S--CHHHHHHHHHHHHH-CCSSEEEEES-TT-
T ss_pred CCCCCeEEEEEeecccHHHHHHHHHHHHHhCcccc--------CCCCCCCCHhHHHHHHHHHHHH-hhCCEEEEecCCCC
Confidence 33457999999999999999999999998655432 3589999999999999999999 69999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
|||+||+++|++.|+++||||+++||++ +|| .+.++||||||||||+|+|++|+++|+++
T Consensus 222 sNT~kL~eia~~~~~~t~~Ie~~~el~~-----------------~~l-~~~~~VGItaGASTP~~ii~eVi~~l~~~ 281 (281)
T PF02401_consen 222 SNTRKLAEIAKEHGKPTYHIETADELDP-----------------EWL-KGVKKVGITAGASTPDWIIEEVIDRLEEI 281 (281)
T ss_dssp HHHHHHHHHHHHCTTCEEEESSGGG--H-----------------HHH-TT-SEEEEEE-TTS-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCEEEeCCccccCH-----------------hHh-CCCCEEEEEccCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987 999 68999999999999999999999999863
No 6
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.7e-47 Score=334.62 Aligned_cols=125 Identities=36% Similarity=0.535 Sum_probs=117.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+|+++++||||+.++|++|++.|+++| ++++++||||+||++||+|+++|| +++|+||||||+|||||+
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~----------~~~~v~~TIC~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKS----------KELVFFNTICSATKKRQESAKELS-KEVDVMIVIGGKHSSNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhC----------cccccCCCcchhhhhHHHHHHHHH-HhCCEEEEecCCCCccHH
Confidence 789999999999999999999998753 356789999999999999999999 589999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
||++||++.|+++||||+++||++ +|| .++.+||||||||||+|+|++|+.+|+++
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~-----------------~~~-~~~~~VGitaGASTP~~li~eV~~~l~~~ 281 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDL-----------------EML-KDYKIIGITAGASTPDWIIEEVIKKIKNL 281 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCH-----------------HHh-CCCCEEEEEccCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999997 999 68999999999999999999999999753
No 7
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=3.9e-47 Score=334.62 Aligned_cols=131 Identities=38% Similarity=0.584 Sum_probs=119.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh
Q 037064 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 23 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN 102 (187)
+.+++++++||||+.++|++|+++|+++++.. ++..+||||+||++||+|+++|| +++|+||||||+||||
T Consensus 154 ~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~--------~v~~~nTIC~aT~~RQ~a~~~La-~~vD~miVVGg~~SsN 224 (298)
T PRK01045 154 DPDKLALVTQTTLSVDDTAEIIAALKERFPEI--------QGPPKDDICYATQNRQEAVKELA-PQADLVIVVGSKNSSN 224 (298)
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCc--------ccCCCCCcchhhHHHHHHHHHHH-hhCCEEEEECCCCCcc
Confidence 34789999999999999999999998753321 23339999999999999999999 5899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhccH
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~~~ 180 (187)
|+||++||++.|+++||||+++||++ +|| .++.+||||||||||+|+|++|+.+|.++..
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~-----------------~~l-~~~~~VGitaGASTP~~li~eV~~~l~~~~~ 284 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDP-----------------EWF-KGVKTVGVTAGASAPEWLVQEVIARLKELGA 284 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcH-----------------HHh-cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999997 999 7999999999999999999999999998754
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=1e-43 Score=338.27 Aligned_cols=125 Identities=42% Similarity=0.576 Sum_probs=118.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+++++++||||+.++|++|++.|++++ ++++++||||+||++||+|+++|| +++|+||||||+|||||+
T Consensus 154 ~~~~~~~QTT~~~~~~~~~~~~l~~~~----------~~~~~~~tiC~at~~Rq~a~~~la-~~~d~~~vvGg~~SsNt~ 222 (647)
T PRK00087 154 KKICVVSQTTEKQENFEKVLKELKKKG----------KEVKVFNTICNATEVRQEAAEKLA-KKVDVMIVVGGKNSSNTT 222 (647)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhC----------CCcccCCCcchhhhhHHHHHHHHH-hhCCEEEEECCCCCccHH
Confidence 789999999999999999999998743 356789999999999999999999 589999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
||++||++.|+++||||+++||++ +|| .++.+||||||||||+|+|++|+.+|.++
T Consensus 223 ~L~~i~~~~~~~~~~ie~~~el~~-----------------~~~-~~~~~vgitagaStP~~~i~~v~~~l~~~ 278 (647)
T PRK00087 223 KLYEICKSNCTNTIHIENAGELPE-----------------EWF-KGVKIIGVTAGASTPDWIIEEVIKKMSEL 278 (647)
T ss_pred HHHHHHHHHCCCEEEECChHHCCH-----------------HHh-CCCCEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999997 999 68999999999999999999999999876
No 9
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=94.75 E-value=0.4 Score=38.22 Aligned_cols=140 Identities=17% Similarity=0.202 Sum_probs=78.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+|+++.+.+ ...-+..+..-++....+ .| -++.++++-... .+.++.++++....+|++|+.+...++- .
T Consensus 1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-~- 70 (264)
T cd01537 1 TIGVLVPDL-DNPFFAQVLKGIEEAAKA-AG-----YQVLLANSQNDA-EKQLSALENLIARGVDGIIIAPSDLTAP-T- 70 (264)
T ss_pred CeEEEEcCC-CChHHHHHHHHHHHHHHH-cC-----CeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCCCcch-h-
Confidence 578888776 445677787777764333 22 234455554433 3445666667766899999987665543 3
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhh-hhhhccc-cCCCcEEEEeeCCCCc---HHHHHHHHHHHHh
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GEL-VEKENWL-PKGQITIGVTAGASTP---DKAIEGVLKKVFE 177 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~-~~~~~wl-~~~~~~IGITAGASTP---~~lI~eVi~~l~~ 177 (187)
+++.+.+.++|...+.+..+-. ..+.+.... .+. ..--.+| ..+.++||+.++.... ....+.+.+.+.+
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 146 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIPDG--DRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKE 146 (264)
T ss_pred HHHHhhhcCCCEEEeccCCCCC--cccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHH
Confidence 6788888899998887664420 011111111 111 1111222 1357899998875441 2234555555544
No 10
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=89.59 E-value=0.98 Score=40.17 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=76.4
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
.+.+.|+-|+-...=|..+++++ ++-.-+|++|.++=.-..-+.-.|. -+++.|++++|++.
T Consensus 88 gl~viDaTCP~V~kv~~~v~~~~-~~Gy~iiiiG~~~HpEv~gi~g~~~---~~~~vv~~~~d~~~-------------- 149 (280)
T TIGR00216 88 GLEVIDATCPLVTKVHNAVKKYA-KEGYHVILIGKKNHPEVIGTRGYAP---DKAIVVETLEDLEN-------------- 149 (280)
T ss_pred CCeEEeCCCcccHHHHHHHHHHH-hCCCEEEEEeCCCCCeeeeeccCcC---CCEEEECCHHHHHh--------------
Confidence 36678999999999999999999 5889999999998877777766652 24889999999864
Q ss_pred hhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 143 EKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 143 ~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
| ...+.+|+.+=+--+.+..++++++|.+-
T Consensus 150 -----l-~~~~~v~vvsQTT~~~~~~~~i~~~l~~~ 179 (280)
T TIGR00216 150 -----F-KVEDLLGVVSQTTLSQEDTKEIVAELKAR 179 (280)
T ss_pred -----C-CCCCcEEEEEcCCCcHHHHHHHHHHHHHh
Confidence 3 23467999999999999999999999753
No 11
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=89.46 E-value=7.2 Score=33.44 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 38 GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 38 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
.-|.+++..+.+...+ .| -.+...+|=-. .+++++++.|.+.++|.+|+.+-.++ ..+|..+.+. +.|.
T Consensus 14 pff~~ii~gIe~~a~~-~G-----y~l~l~~t~~~--~~~e~~i~~l~~~~vDGiI~~s~~~~--~~~l~~~~~~-~iPv 82 (279)
T PF00532_consen 14 PFFAEIIRGIEQEARE-HG-----YQLLLCNTGDD--EEKEEYIELLLQRRVDGIILASSEND--DEELRRLIKS-GIPV 82 (279)
T ss_dssp HHHHHHHHHHHHHHHH-TT-----CEEEEEEETTT--HHHHHHHHHHHHTTSSEEEEESSSCT--CHHHHHHHHT-TSEE
T ss_pred cHHHHHHHHHHHHHHH-cC-----CEEEEecCCCc--hHHHHHHHHHHhcCCCEEEEecccCC--hHHHHHHHHc-CCCE
Confidence 3477888888764332 22 12333333323 34448888888899999999955444 5777778866 8999
Q ss_pred EEeCCCCCCC-CCCcchhhhhchhhhhhhccccCCCcE-EEEeeCCCCcHHHHHHH
Q 037064 118 YWIDSEKRIG-PGNKMAYKLMHGELVEKENWLPKGQIT-IGVTAGASTPDKAIEGV 171 (187)
Q Consensus 118 ~~Ie~~~eL~-~~~~~~~~~~~~~~~~~~~wl~~~~~~-IGITAGASTP~~lI~eV 171 (187)
.+++...+-+ .-..+..-...+.-......+..|.++ |++.+|...-....+..
T Consensus 83 V~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~ 138 (279)
T PF00532_consen 83 VLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERL 138 (279)
T ss_dssp EEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHH
T ss_pred EEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHH
Confidence 9999985443 211121111111112233333468899 99999976655555544
No 12
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=89.45 E-value=2.1 Score=33.03 Aligned_cols=73 Identities=14% Similarity=0.363 Sum_probs=52.9
Q ss_pred cCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccC--CCcEEEEeeCCCC
Q 037064 87 EKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPK--GQITIGVTAGAST 163 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~--~~~~IGITAGAST 163 (187)
+++-++|+-++-...++ .++-.+|+..++|-+++.+-.||- .|+-. ....||||- ..=
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG------------------~a~Gk~~~~svvaI~d-~g~ 101 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLG------------------AAAGLEVGAASAAIVD-EGK 101 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHH------------------HHhCCCCCeEEEEEEc-hhh
Confidence 56777777777666565 899999999999999999999985 44411 356889985 444
Q ss_pred cHHHHHHHHHHHHhc
Q 037064 164 PDKAIEGVLKKVFEI 178 (187)
Q Consensus 164 P~~lI~eVi~~l~~~ 178 (187)
-+.++++++..++++
T Consensus 102 a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 102 AEELLKEIIEKVEAL 116 (117)
T ss_pred hHHHHHHHHHHHHhc
Confidence 456677777776654
No 13
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=89.09 E-value=4.2 Score=31.65 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL 106 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL 106 (187)
||++.-.......+..+.+.++..+.+. | ..-++.++++-|... .-.+.+.+++...+|++|..+.. .+...+
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~ii~~~~~--~~~~~~ 74 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEI-G---RGLEVILADSQSDPE-RALEALRDLIQQGVDGIIGPPSS--SSALAV 74 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHh-C---CceEEEEecCCCCHH-HHHHHHHHHHHcCCCEEEecCCC--HHHHHH
Confidence 5544433323455666766666544442 1 134566778877663 34445556665678988776654 344448
Q ss_pred HHHHHHhCCCeEEeCCCCCC
Q 037064 107 QVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 107 ~eia~~~g~~t~~Ie~~~eL 126 (187)
.+.+.+.++|...+....+.
T Consensus 75 ~~~~~~~~ip~v~~~~~~~~ 94 (269)
T cd01391 75 VELAAAAGIPVVSLDATAPD 94 (269)
T ss_pred HHHHHHcCCcEEEecCCCCc
Confidence 88888999999888776543
No 14
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.93 E-value=12 Score=30.73 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=64.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++...+. -.-|..+.+.+.....+ .| -.+.+.++ +--.++|.. +..|....+|.+|+.++.. ++..
T Consensus 2 Igvv~~~~~-~~~~~~~~~~i~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgii~~~~~~--~~~~ 70 (269)
T cd06281 2 IGCLVSDIT-NPLLAQLFSGAEDRLRA-AG-----YSLLIANS--LNDPERELEILRSFEQRRMDGIIIAPGDE--RDPE 70 (269)
T ss_pred EEEEecCCc-cccHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEecCCC--CcHH
Confidence 566665433 24456666666553222 22 11222222 112344433 4456556899999998743 3345
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
+.+.+++.++|...|+...+ .....+...... +.. .....+..|.++|++-+|-.
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~-~~~~~V~~d~~~~g~~-a~~~l~~~G~~~i~~l~~~~ 126 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMG-GGADAVLFDHAAGMRQ-AVEYLISLGHRRIALVGGGS 126 (269)
T ss_pred HHHHHHhCCCCEEEEecccC-CCCCEEEECcHHHHHH-HHHHHHHCCCcEEEEecCcc
Confidence 66677778899999987644 211112111111 121 12233335788999888753
No 15
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.43 E-value=13 Score=30.60 Aligned_cols=91 Identities=12% Similarity=-0.006 Sum_probs=52.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||+++...+..-.-|..+.+.+++...+ .| -++.++++-.+......+.+..|....+|.+|+.+...... ..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g-----~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~ 73 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LG-----VDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDAL-DP 73 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hC-----CEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHh-HH
Confidence 5677775442445677777777664333 22 22333333222233334566666656899999988543222 33
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
.++.+++.|+|...++..
T Consensus 74 ~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 74 AIKRAVAAGIPVISFNAG 91 (271)
T ss_pred HHHHHHHCCCeEEEeCCC
Confidence 445667888999999864
No 16
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=88.37 E-value=1.9 Score=38.30 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=70.3
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhh
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVE 143 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~ 143 (187)
+.+.|.-|+-...=|+.+++++ ++=..+|++|.++=.-..-+.-.|. +-..+.|++++|+..
T Consensus 87 ~~viDaTCP~V~k~~~~v~~~~-~~Gy~iviiG~~~HpEv~gi~g~~~--~~~~~vv~~~~~~~~--------------- 148 (281)
T PF02401_consen 87 LEVIDATCPFVKKIHKIVRKYA-KEGYQIVIIGDKNHPEVIGILGYAP--EEKAIVVESPEDVEK--------------- 148 (281)
T ss_dssp EEEEE---HHHHHHHHHHHHHH-HCT-EEEEES-TT-HHHHHHHCCHH--TS-EEEESSHHHHHH---------------
T ss_pred CEEEECCChhHHHHHHHHHHHH-hcCCEEEEECCCCCceEEEeccccc--CCceEEeCChhhhcc---------------
Confidence 5678999999999999999999 4788999999999988888887775 225899999998853
Q ss_pred hhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 144 KENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 144 ~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
--+ ...++++|.+=+--+.+..++++++|.+.
T Consensus 149 --l~~-~~~~kv~vvsQTT~~~~~~~~i~~~l~~~ 180 (281)
T PF02401_consen 149 --LPI-SDPKKVAVVSQTTQSVEKFEEIVEALKKR 180 (281)
T ss_dssp --GGG-SSTTCEEEEE-TTS-HHHHHHHHHHHHHH
T ss_pred --cCC-CCCCeEEEEEeecccHHHHHHHHHHHHHh
Confidence 112 23468999999999999999999999764
No 17
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=87.84 E-value=2.7 Score=32.76 Aligned_cols=73 Identities=18% Similarity=0.383 Sum_probs=52.8
Q ss_pred cCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccC--CCcEEEEeeCCCC
Q 037064 87 EKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPK--GQITIGVTAGAST 163 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~--~~~~IGITAGAST 163 (187)
+++=++|+-++-...+ ..++-.+|++.++|-.++.+-.||- .|+-. ....||||-.+ -
T Consensus 45 gkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG------------------~a~Gk~~~~svvaI~d~g-~ 105 (122)
T PRK04175 45 GIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLG------------------KAAGLEVGAAAAAIVDAG-K 105 (122)
T ss_pred CCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH------------------HHhCCCCCeEEEEEechh-h
Confidence 4566666666655555 3799999999999999999999985 45511 34689999643 3
Q ss_pred cHHHHHHHHHHHHhc
Q 037064 164 PDKAIEGVLKKVFEI 178 (187)
Q Consensus 164 P~~lI~eVi~~l~~~ 178 (187)
-+.+++++.+.++.+
T Consensus 106 a~~~~~~~~~~i~~~ 120 (122)
T PRK04175 106 AKELVEDIVEKVNEL 120 (122)
T ss_pred hHHHHHHHHHHHHHh
Confidence 567777888777654
No 18
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=87.71 E-value=8.7 Score=30.75 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=55.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+|+++...+ ...-+.++.+.+++...+. .-++.++++--.. ..-++.+++|...++|.+|+.+. ++.....
T Consensus 1 ~ig~i~p~~-~~~~~~~~~~~~~~~a~~~------g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgvi~~~~-~~~~~~~ 71 (267)
T cd01536 1 KIGLVVPSL-NNPFWQAMNKGAEAAAKEL------GVELIVLDAQNDV-SKQIQQIEDLIAQGVDGIIISPV-DSAALTP 71 (267)
T ss_pred CEEEEeccc-cCHHHHHHHHHHHHHHHhc------CceEEEECCCCCH-HHHHHHHHHHHHcCCCEEEEeCC-CchhHHH
Confidence 467777654 4556777877776643331 2234444443222 23346677777668999998765 3444444
Q ss_pred HHHHHHHhCCCeEEeCCCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~e 125 (187)
..+.+++.++|...+.....
T Consensus 72 ~~~~l~~~~ip~V~~~~~~~ 91 (267)
T cd01536 72 ALKKANAAGIPVVTVDSDID 91 (267)
T ss_pred HHHHHHHCCCcEEEecCCCC
Confidence 55666778899988877543
No 19
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=87.62 E-value=1.5 Score=39.05 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=75.3
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhh
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVE 143 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~ 143 (187)
+.+.|.-|+-...=|..+++++ ++=..+|++|.++=.-..-+.-.| +-+++.|++++|++.
T Consensus 92 ~~viDaTCP~V~k~~~~v~~~~-~~Gy~iviiG~~~HpEv~gi~g~~---~~~~~vv~~~~d~~~--------------- 152 (281)
T PRK12360 92 LEIIDATCPFVKKIQNIVEEYY-NKGYSIIIVGDKNHPEVIGINGWC---DNSAYIVNSIEEVEN--------------- 152 (281)
T ss_pred CeEEeCCCccchHHHHHHHHHH-hCCCEEEEEcCCCCceeeEeccCc---CCCeEEECCHHHHhh---------------
Confidence 5678999999999999999999 478899999999888877777665 124789999999964
Q ss_pred hhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 144 KENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 144 ~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
| ...++|++++=+--+.+..++++++|.+
T Consensus 153 ----l-~~~~kv~~vsQTT~~~~~~~~iv~~l~~ 181 (281)
T PRK12360 153 ----I-PFLDKACVVAQTTIIPELWEDILNVIKL 181 (281)
T ss_pred ----C-ccccCEEEEECCCCcHHHHHHHHHHHHH
Confidence 2 1236799999999999999999999875
No 20
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=87.50 E-value=14 Score=30.00 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=69.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++.-. +.-.-|..+...+.+...+. | -.+.++++=. ...+| +.++.|....+|++|++|...+. .
T Consensus 2 i~vv~p~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~---~ 69 (268)
T cd06273 2 IGAIVPT-LDNAIFARVIQAFQETLAAH-G-----YTLLVASSGY--DLDREYAQARKLLERGVDGLALIGLDHSP---A 69 (268)
T ss_pred eEEEeCC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEecCCC--CHHHHHHHHHHHHhcCCCEEEEeCCCCCH---H
Confidence 4555543 33345666766665543332 2 2233333211 22334 34556665679999999765443 4
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC---c-HHHHHHHHHHHHh
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST---P-DKAIEGVLKKVFE 177 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST---P-~~lI~eVi~~l~~ 177 (187)
+++.+++.|+|...+.+..+-.....+...... +..... ..+..|.++||+-+|... + ..-.+...+.|.+
T Consensus 70 ~~~~l~~~~iPvv~~~~~~~~~~~~~v~~d~~~~~~~~~~-~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~ 145 (268)
T cd06273 70 LLDLLARRGVPYVATWNYSPDSPYPCVGFDNREAGRLAAR-HLIALGHRRIAMIFGPTQGNDRARARRAGVRAALAE 145 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCCCCCCCEEEeChHHHHHHHHH-HHHHCCCCeEEEEeccccCCccHHHHHHHHHHHHHH
Confidence 455677889999998764322111111111111 121111 112247889999876432 1 2334555555544
No 21
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=87.29 E-value=6.2 Score=32.38 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=50.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHH-HHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQE-RQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~-RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
|||++. ..++-.-|..+.+.+++...+ .| -++.+..+-...... ..+.++.|...++|.||+.+ ..+++..
T Consensus 1 ~igvi~-~~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~-~~~~~~~ 72 (275)
T cd06320 1 KYGVVL-KTLSNEFWRSLKEGYENEAKK-LG-----VSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSP-ISDVNLV 72 (275)
T ss_pred CeeEEE-ecCCCHHHHHHHHHHHHHHHH-hC-----CeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECC-CChHHhH
Confidence 355554 224445567777777653322 22 122222111222333 34556667666899998765 4444544
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
...+.+++.|+|...++..
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 73 PAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHHHCCCeEEEECCC
Confidence 5566777889999888764
No 22
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=87.28 E-value=6.6 Score=32.19 Aligned_cols=90 Identities=10% Similarity=0.194 Sum_probs=50.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+|+++.-. +.-.-|..+...+.+...+..| -.+.++++ ++.-.+-.+.+..+....+|++|+.+...+. ...
T Consensus 1 ~ig~~~~~-~~~~~~~~~~~~i~~~~~~~~g-----~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~ 72 (270)
T cd06308 1 VIGFSQCN-LADPWRAAMNDEIQREASNYPD-----VELIIADA-ADDNSKQVADIENFIRQGVDLLIISPNEAAP-LTP 72 (270)
T ss_pred CEEEEeeC-CCCHHHHHHHHHHHHHHHhcCC-----cEEEEEcC-CCCHHHHHHHHHHHHHhCCCEEEEecCchhh-chH
Confidence 35666643 4445567777777654333212 12333332 2223333455555555689999988754332 234
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+++.+.+.|+|...+++.
T Consensus 73 ~~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 73 VVEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHHCCCCEEEeCCC
Confidence 555566789999999863
No 23
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.80 E-value=9.4 Score=31.18 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=51.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL 106 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL 106 (187)
|+++.-. +.-.-|..+..-++....+ .| -++.++++-...... .+++..+....+|.+||.+ ..|.....+
T Consensus 2 i~vi~~~-~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~~~~-~~~i~~~~~~~~dgiii~~-~~~~~~~~~ 72 (277)
T cd06319 2 IAYIVSD-LRIPFWQIMGRGVKSKAKA-LG-----YDAVELSAENSAKKE-LENLRTAIDKGVSGIIISP-TNSSAAVTL 72 (277)
T ss_pred eEEEeCC-CCchHHHHHHHHHHHHHHh-cC-----CeEEEecCCCCHHHH-HHHHHHHHhcCCCEEEEcC-CchhhhHHH
Confidence 5555422 3345567777777653322 22 234445554333222 2455565546899998754 445445567
Q ss_pred HHHHHHhCCCeEEeCCC
Q 037064 107 QVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 107 ~eia~~~g~~t~~Ie~~ 123 (187)
.+.+++.|+|...++..
T Consensus 73 l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 73 LKLAAQAKIPVVIADIG 89 (277)
T ss_pred HHHHHHCCCCEEEEecC
Confidence 78888889998888753
No 24
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=86.73 E-value=9.5 Score=31.02 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=55.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+|+.-.+-+. -|..+.+-+++...+ ++ .++.+ ++..=.. ..-++.+..+....+|++|| ....++.+..
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~-~g-----~~~~~~~~~~~d~-~~q~~~i~~~i~~~~d~Iiv-~~~~~~~~~~ 71 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKE-LG-----YEVEIVFDAQNDP-EEQIEQIEQAISQGVDGIIV-SPVDPDSLAP 71 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHH-HT-----CEEEEEEESTTTH-HHHHHHHHHHHHTTESEEEE-ESSSTTTTHH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHH-cC-----CEEEEeCCCCCCH-HHHHHHHHHHHHhcCCEEEe-cCCCHHHHHH
Confidence 45555555554 667777777664333 22 22233 2222222 33445566666678999884 5555667778
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+++-|++.|+|.+.+++.
T Consensus 72 ~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 72 FLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTTSEEEEESST
T ss_pred HHHHHhhcCceEEEEecc
Confidence 888899999999999988
No 25
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=86.20 E-value=14 Score=29.79 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 35 MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 35 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
+.-.-|..+.+.+.+...+ +| -.+.++++-...... .+.++.|...++|.+|+..+... + ...++.+.+.|
T Consensus 9 ~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~~~~-~~~~~~l~~~~vdgiii~~~~~~-~-~~~~~~~~~~~ 79 (266)
T cd06282 9 LANPVFAECVQGIQEEARA-AG-----YSLLLATTDYDAERE-ADAVETLLRQRVDGLILTVADAA-T-SPALDLLDAER 79 (266)
T ss_pred CCcchHHHHHHHHHHHHHH-CC-----CEEEEeeCCCCHHHH-HHHHHHHHhcCCCEEEEecCCCC-c-hHHHHHHhhCC
Confidence 3334456666666553222 22 233344332222222 24555665568999998765432 2 34667788899
Q ss_pred CCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC
Q 037064 115 IPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 115 ~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA 161 (187)
+|...+.+... .....+...... +... ....+..|.++|++-.|.
T Consensus 80 ipvV~~~~~~~-~~~~~v~~d~~~~g~~~-~~~l~~~g~~~i~~i~~~ 125 (266)
T cd06282 80 VPYVLAYNDPQ-PGRPSVSVDNRAAARDV-AQALAALGHRRIAMLAGR 125 (266)
T ss_pred CCEEEEeccCC-CCCCEEeeCcHHHHHHH-HHHHHHcCcccEEEeccc
Confidence 99888865432 111111111111 1111 111222378899988763
No 26
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=86.07 E-value=1.9 Score=37.27 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.+|++++=.... +++..-+...++.|.+ .|- ++...++ + .+.+..|. .+|+++|-|| ||.
T Consensus 32 ~~v~fIPtAs~~-~~~~~y~~~~~~af~~-lG~-----~v~~l~~---~----~d~~~~l~--~ad~I~v~GG----nt~ 91 (233)
T PRK05282 32 RKAVFIPYAGVT-QSWDDYTAKVAEALAP-LGI-----EVTGIHR---V----ADPVAAIE--NAEAIFVGGG----NTF 91 (233)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHHH-CCC-----EEEEecc---c----hhhHHHHh--cCCEEEECCc----cHH
Confidence 578888765533 3444444455554444 221 1221211 1 23345564 6997777666 888
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
+|.++-++.|... .|+ +.+.+|...+|.+|||..
T Consensus 92 ~l~~~l~~~gl~~-------------~l~------------~~~~~G~~~~G~SAGAii 125 (233)
T PRK05282 92 QLLKQLYERGLLA-------------PIR------------EAVKNGTPYIGWSAGANV 125 (233)
T ss_pred HHHHHHHHCCcHH-------------HHH------------HHHHCCCEEEEECHHHHh
Confidence 9998888776211 111 223357778999999843
No 27
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=85.96 E-value=1.4 Score=32.68 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=40.0
Q ss_pred HhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 83 KLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 83 ~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.|-++.+-++++-++-..-.+.+|-++|++.|+|..+|++-.||-
T Consensus 24 ai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LG 68 (84)
T PRK13600 24 ALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALG 68 (84)
T ss_pred HHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 333357899999999999999999999999999999999999985
No 28
>PRK14072 6-phosphofructokinase; Provisional
Probab=85.91 E-value=1.5 Score=40.90 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhC--CCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRG--IPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g--~~t~~Ie~~~eL~ 127 (187)
...++.++..|-+..+|.+|||||-.|-.+. +|.+.+++.| .+...| +.=||
T Consensus 89 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgI--PkTID 143 (416)
T PRK14072 89 RAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGI--PKTID 143 (416)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEe--eeccc
Confidence 4678999999988899999999999998654 8899888888 555554 44444
No 29
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=85.53 E-value=2.3 Score=38.13 Aligned_cols=94 Identities=10% Similarity=0.114 Sum_probs=76.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
.+.+.|.-|+-..+=|..+++++ ++=..+|++|.++=.-..-+.-.|. -+++.|++++|++.
T Consensus 88 g~~viDaTCP~V~k~~~~v~~~~-~~Gy~vvi~G~~~HpEv~gi~g~~~---~~~~vv~~~~e~~~-------------- 149 (298)
T PRK01045 88 GLTVIDATCPLVTKVHKEVARMS-REGYEIILIGHKGHPEVEGTMGQAP---GGVYLVESPEDVAK-------------- 149 (298)
T ss_pred CCeEEeCCCccchHHHHHHHHHH-hCCCEEEEEeCCCCCeeeeeccCcC---CCEEEEcCHHHHhh--------------
Confidence 36778999999999999999999 5788999999998888877776652 24788999999864
Q ss_pred hhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 143 EKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 143 ~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
+.....+.|+|.+=+--+.+-.++++++|.+.
T Consensus 150 ----l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~ 181 (298)
T PRK01045 150 ----LEVKDPDKLALVTQTTLSVDDTAEIIAALKER 181 (298)
T ss_pred ----cccCCCCcEEEEEcCCCcHHHHHHHHHHHHHh
Confidence 10013467999999999999999999999753
No 30
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=85.38 E-value=11 Score=30.47 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=43.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
++.+.|+=|.....+ +++++|... .+|+ |||+..|.++..+.+++...++|.+.+.....
T Consensus 42 ~~~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~ 102 (299)
T cd04509 42 ELVIYDDQSDPARAL-AAARRLCQQEGVDA--LVGPVSSGVALAVAPVAEALKIPLISPGATAP 102 (299)
T ss_pred EEEEecCCCCHHHHH-HHHHHHhcccCceE--EEcCCCcHHHHHHHHHHhhCCceEEeccCCCc
Confidence 466778777665555 455667643 4664 57888888999999999999999888765543
No 31
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=85.32 E-value=22 Score=30.28 Aligned_cols=140 Identities=15% Similarity=0.267 Sum_probs=72.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.|+++... ++-.-|.++.+.+.+...+ .| -.+.+. .|....++|. .+..|....+|.+|+.+... +..
T Consensus 66 ~Igvv~~~-~~~~~~~~i~~gi~~~a~~-~g-----~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~ 134 (342)
T PRK10014 66 VIGLIVRD-LSAPFYAELTAGLTEALEA-QG-----RMVFLL--QGGKDGEQLAQRFSTLLNQGVDGVVIAGAAG--SSD 134 (342)
T ss_pred EEEEEeCC-CccchHHHHHHHHHHHHHH-cC-----CEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC--CcH
Confidence 57887754 4444566776666553222 22 111111 1222334443 44556556899999998743 234
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc---HHHHHHHHHHHHh
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP---DKAIEGVLKKVFE 177 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP---~~lI~eVi~~l~~ 177 (187)
.+.+.+++.|+|..+++...+......+..-... +... ....+..|.++||+.+|..+. ..-.+...+.|.+
T Consensus 135 ~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a-~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~ 210 (342)
T PRK10014 135 DLREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLL-TEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLK 210 (342)
T ss_pred HHHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHH-HHHHHHCCCCEEEEEcCCcccccHHHHHHHHHHHHHH
Confidence 5666777889999999765332211111111111 2221 112232478899998875432 2233444555543
No 32
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.32 E-value=10 Score=30.96 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=51.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
|||++.. +++-.-|..+...+++...+ .| -.+.+.++-......+| +.+..|....+|.+|+.+... .-+.
T Consensus 1 ~Igvi~~-~~~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~-~~~~ 72 (273)
T cd06310 1 KIALVPK-GTTSDFWQAVKAGAEAAAKE-LG-----VKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDA-KALV 72 (273)
T ss_pred CeEEEec-CCCcHHHHHHHHHHHHHHHH-cC-----CEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCCh-hhhH
Confidence 6888875 46656677887777664333 22 12222221112233444 445566667899999986532 2223
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
..++.+.+.|.|...+++.
T Consensus 73 ~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 73 PPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 3445555788999999764
No 33
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=85.05 E-value=1.7 Score=36.84 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=46.8
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-++.+.|+-|....-+ .++++|.. + ++..|+|+..|+.+..+..++++.++|.......
T Consensus 41 i~~~~~D~~~~~~~~~-~~~~~li~-~-~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~ 99 (334)
T cd06342 41 LELVVEDDQADPKQAV-AVAQKLVD-D-GVVGVVGHLNSGVTIPASPIYADAGIVMISPAAT 99 (334)
T ss_pred EEEEEecCCCChHHHH-HHHHHHHh-C-CceEEECCCccHhHHHhHHHHHhCCCeEEecCCC
Confidence 3577889999887664 56667774 5 7888999999999999999999999887655433
No 34
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=84.77 E-value=6.6 Score=35.62 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=50.8
Q ss_pred CeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhcH-H-HHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICH-A-AQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-A-T~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+...+.. ..+..+.+.|++. ..++..|+.+|. . +.+=.+++..+.+..+|+||-|||=.+-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~----------~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAA----------GVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHc----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 5788888655543 4566666666541 223556788872 1 2222233333434579999999999999
Q ss_pred hhHHHHHHHHHh
Q 037064 102 NTSSLQVIAEDR 113 (187)
Q Consensus 102 NT~rL~eia~~~ 113 (187)
.+-|.+.+...+
T Consensus 93 D~aK~ia~~~~~ 104 (386)
T cd08191 93 DLAKIAGLLLAH 104 (386)
T ss_pred HHHHHHHHHHhC
Confidence 999988876544
No 35
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=84.18 E-value=1.6 Score=42.53 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+++.+++.|-+..+|.+|||||-.|. |..+|.|.+++.|.+.-.|-=+.-||
T Consensus 177 e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTID 230 (568)
T PLN02251 177 EQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTID 230 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEe
Confidence 468888888888899999999999997 66688999988885555555566665
No 36
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=83.93 E-value=1.4 Score=38.19 Aligned_cols=60 Identities=33% Similarity=0.405 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCC
Q 037064 72 HAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKG 151 (187)
Q Consensus 72 ~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~ 151 (187)
..+.....=...|. ++|.++|=|| ||..|.+.+++.|.. ++ | .+.|= +|
T Consensus 70 l~~~~~~~Ie~~l~--~~d~IyVgGG----NTF~LL~~lke~gld--------~i-----I-----------r~~vk-~G 118 (224)
T COG3340 70 LSKPPLAAIENKLM--KADIIYVGGG----NTFNLLQELKETGLD--------DI-----I-----------RERVK-AG 118 (224)
T ss_pred ccCCCHHHHHHhhh--hccEEEECCc----hHHHHHHHHHHhCcH--------HH-----H-----------HHHHH-cC
Confidence 33444433333454 5998887776 999999999999831 11 1 13444 68
Q ss_pred CcEEEEeeCCC
Q 037064 152 QITIGVTAGAS 162 (187)
Q Consensus 152 ~~~IGITAGAS 162 (187)
.--||.+|||=
T Consensus 119 ~~YiG~SAGA~ 129 (224)
T COG3340 119 TPYIGWSAGAN 129 (224)
T ss_pred CceEEeccCce
Confidence 88999999983
No 37
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=83.68 E-value=7.5 Score=33.89 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=64.2
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc--h
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH--G 139 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~--~ 139 (187)
-++.+.|+=| +..-. .++.+|... .+.+|||+..|+++..+.+++.+.++|.+.......+....-+-+.... .
T Consensus 35 i~l~~~D~~~-~~~a~-~~~~~li~~--~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~ 110 (336)
T cd06339 35 IELRVYDTAG-AAGAA-AAARQAVAE--GADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPED 110 (336)
T ss_pred ceEEEEeCCC-cccHH-HHHHHHHHc--CCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHH
Confidence 3567889988 55444 455667643 4457899999999998889999999887776655443211111111111 1
Q ss_pred hhhhhhcccc-CCCcEEEEeeCCCC-cHHHHHHHHHHHHh
Q 037064 140 ELVEKENWLP-KGQITIGVTAGAST-PDKAIEGVLKKVFE 177 (187)
Q Consensus 140 ~~~~~~~wl~-~~~~~IGITAGAST-P~~lI~eVi~~l~~ 177 (187)
+...--.|+. .+.++|+|..+.+. ...+.+...+.+.+
T Consensus 111 ~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~~ 150 (336)
T cd06339 111 EARRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQAWQQ 150 (336)
T ss_pred HHHHHHHHHHhcCccceEEEecCChHHHHHHHHHHHHHHH
Confidence 2222223331 36788998876432 12344444444443
No 38
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=83.26 E-value=11 Score=31.08 Aligned_cols=85 Identities=8% Similarity=-0.042 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC-CCCCCcchhhhhchhhhhhhcccc--CCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR-IGPGNKMAYKLMHGELVEKENWLP--KGQ 152 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e-L~~~~~~~~~~~~~~~~~~~~wl~--~~~ 152 (187)
+..+++.++...++|.+|+++...+.++ +..++++.+.|..+|+.... -.....+..-.-.+-.......+. .|.
T Consensus 40 ~~~~~~~~~~~~~vdGvIi~~~~~~~~~--~~~~~~~~~~PvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~~~G~ 117 (247)
T cd06276 40 DLFKNIISNTKGKYSGYVVMPHFKNEIQ--YFLLKKIPKEKLLILDHSIPEGGEYSSVAQDFEKAIYNALQEGLEKLKKY 117 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCcHH--HHHHhccCCCCEEEEcCcCCCCCCCCeEEEccHHHHHHHHHHHHHHhcCC
Confidence 3444444433478999999986544433 45566557789999987531 111111211111111112223333 589
Q ss_pred cEEEEeeCCC
Q 037064 153 ITIGVTAGAS 162 (187)
Q Consensus 153 ~~IGITAGAS 162 (187)
++||+-+|..
T Consensus 118 ~~Ia~i~~~~ 127 (247)
T cd06276 118 KKLILVFPNK 127 (247)
T ss_pred CEEEEEecCc
Confidence 9999997754
No 39
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=83.07 E-value=2.4 Score=36.47 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=43.8
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++.+.|+=|..+.-++. +++|. .+-.+.+++|+..|+.+..+..++++.+++.+-
T Consensus 42 ~l~~~D~~~~~~~a~~~-a~~li-~~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~ 96 (340)
T cd06349 42 NIVFEDSKSDPRQAVTI-AQKFV-ADPRIVAVLGDFSSGVSMAASPIYQRAGLVQLS 96 (340)
T ss_pred EEEEeCCCCChHHHHHH-HHHHh-ccCCeEEEECCCccHhHHHhHHHHHhCCCeEEe
Confidence 56788999988888754 45676 345677888999999999999999999988653
No 40
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=82.86 E-value=1.7 Score=37.24 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=45.1
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
-++.+.|+=|.+..-.+ ++++|.. +-.+.+|+|+..|+.+..+..++.+.++|.+.
T Consensus 41 i~l~~~D~~~~p~~a~~-~a~~Li~-~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (333)
T cd06331 41 LELVVEDPASDPAFAAK-AARRLIR-DDKVDAVFGCYTSASRKAVLPVVERGRGLLFY 96 (333)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHh-ccCCcEEEecccHHHHHHHHHHHHhcCceEEe
Confidence 36778899997766664 6688883 45788899999999999999999998877654
No 41
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=82.82 E-value=14 Score=30.20 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=52.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
||+++... .+-.-|..+.+.+.....+..+ -++.+.++ +...++| +.++.+....+|.+||.+. +++...
T Consensus 1 ~igvi~~~-~~~~~~~~~~~gi~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~ 71 (272)
T cd06301 1 KIGVSMAN-FDDNFLTLLRNAMKEHAKVLGG-----VELQFEDA--KNDVATQLSQVENFIAQGVDAIIVVPV-DTAATA 71 (272)
T ss_pred CeeEeecc-cCCHHHHHHHHHHHHHHHHcCC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhhH
Confidence 46666654 3345567776666653333121 22333332 1122233 4566666568999998764 455556
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
.+++.+.+.|+|...+.+.
T Consensus 72 ~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 72 PIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 6777778889999988764
No 42
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=81.94 E-value=5.7 Score=31.00 Aligned_cols=55 Identities=18% Similarity=0.408 Sum_probs=44.9
Q ss_pred hcHHHHHHHHHHHHhhhcCCCEEEEEcCCC-ChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 70 ICHAAQERQDAVYKLVEEKIDLILVVGGWN-SSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 70 IC~AT~~RQ~av~~La~~~~D~miVVGG~n-SSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
|=.-+.+=.+|+++ +++.++|+..+-. .-.+.+|-.+|++.++|-.+|.+..+|-
T Consensus 28 i~~G~~e~~Kai~~---g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG 83 (116)
T COG1358 28 LKKGTNEVTKAIER---GKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELG 83 (116)
T ss_pred chhhHHHHHHHHHc---CCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 33344444555544 6899999999999 8889999999999999999999999996
No 43
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=81.46 E-value=12 Score=30.70 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=59.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+||++.-+ +-.-|..+.+-+.+...+..+ ++.++..+.. ++.+..|...++|.+|+.+ . |..
T Consensus 1 ~ig~i~~~--~~~~~~~~~~gi~~~~~~~~g----------~~~~~~~~~~-~~~~~~l~~~~vdGiI~~~--~--~~~- 62 (265)
T cd01543 1 RVALLVET--SSSYGRGVLRGIARYAREHGP----------WSIYLEPRGL-QEPLRWLKDWQGDGIIARI--D--DPE- 62 (265)
T ss_pred CeEEEecc--cchhhHHHHHHHHHHHHhcCC----------eEEEEecccc-hhhhhhccccccceEEEEC--C--CHH-
Confidence 46766653 344566676666654333121 1112211212 4556667667899999974 2 333
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAG 160 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAG 160 (187)
+.+...+.+.|..+++...+-.....+.....+ +......- +..|.++||+.++
T Consensus 63 ~~~~l~~~~~PvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l-~~~g~~~i~~i~~ 117 (265)
T cd01543 63 MAEALQKLGIPVVDVSGSREKPGIPRVTTDNAAIGRMAAEHF-LERGFRHFAFYGL 117 (265)
T ss_pred HHHHHhhCCCCEEEEeCccCCCCCCEEeeCHHHHHHHHHHHH-HHCCCcEEEEEcC
Confidence 334445678899999764321111112111122 23222222 2257889999854
No 44
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=81.17 E-value=27 Score=28.19 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 35 MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 35 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
++-.-|..+.+-+++...+ .| -++.++++ .-..++|. .+..+....+|.+|+.+...+ ...+ +.+.+.
T Consensus 9 ~~~~~~~~i~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~-~~~~~~ 77 (260)
T cd06286 9 INHPYFSQLVDGIEKAALK-HG-----YKVVLLQT--NYDKEKELEYLELLKTKQVDGLILCSREND--WEVI-EPYTKY 77 (260)
T ss_pred CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHH-HHHhcC
Confidence 3444566676777654333 22 12323322 22344553 445555567999999876444 2333 334455
Q ss_pred CCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCC
Q 037064 114 GIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 114 g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
+ |..+++...+ .....+.....+.........+..|..+||+-+|.
T Consensus 78 ~-pvv~~~~~~~-~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~ 123 (260)
T cd06286 78 G-PIVLCEEYDS-KNISSVYIDHYEAFYEALKYLIQKGYRKIAYCIGR 123 (260)
T ss_pred C-CEEEEecccC-CCCCEEEECChHHHHHHHHHHHHCCCceEEEEcCC
Confidence 5 8888887644 21111211111111112222333478899998874
No 45
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=81.12 E-value=3.5 Score=38.58 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHh--CCCeEEe
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDR--GIPSYWI 120 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~--g~~t~~I 120 (187)
..++.+++.|.+..+|.+|+|||-.|-.+ .+|++.+++. +++...|
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEe
Confidence 45788999998889999999999999755 4888888777 4566655
No 46
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=80.99 E-value=5 Score=34.98 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=45.4
Q ss_pred cccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh---hHHHHHHHHHhCCCeE
Q 037064 59 NVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN---TSSLQVIAEDRGIPSY 118 (187)
Q Consensus 59 ~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN---T~rL~eia~~~g~~t~ 118 (187)
...-++.+.|+-|...+--+.+...|. .. .+.+|+|+..|+. +..+..+|...++|-.
T Consensus 34 ~~~~~l~~~d~~~d~~~~~~~~~~~l~-~~-~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~I 94 (362)
T cd06367 34 NLSLEAVAVSNDTDPISLLLSVCDLLV-VQ-VVAGVVFSDPTDEEAVAQILDFTSAQTRIPVV 94 (362)
T ss_pred ccceEEEEEecCCCHHHHHHHHHHHhc-cc-ceEEEEecCCCCccchhhhhhhhhhhhcCcEE
Confidence 344567778888887777667776776 34 7888889999999 9999999999998854
No 47
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.75 E-value=20 Score=29.36 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=50.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+||++.- +++-.-|..+...+.+...+ +| -++.+.++ .+.-..-++.+..+....+|.+|+.+.. +.....
T Consensus 1 ~igv~~~-~~~~~~~~~~~~~i~~~~~~-~g-----~~v~~~~~-~~~~~~~~~~i~~~~~~~~Dgiii~~~~-~~~~~~ 71 (282)
T cd06318 1 KIGFSQY-TLNSPFFAALTEAAKAHAKA-LG-----YELISTDA-QGDLTKQIADVEDLLTRGVNVLIINPVD-PEGLVP 71 (282)
T ss_pred CeeEEec-cccCHHHHHHHHHHHHHHHH-cC-----CEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEecCC-ccchHH
Confidence 3565542 34555577777777664333 22 12332221 1111122345666776789999987643 333345
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+++.+++.|+|...++..
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (282)
T cd06318 72 AVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred HHHHHHHCCCCEEEecCC
Confidence 667777889999888863
No 48
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.68 E-value=5.4 Score=29.15 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=39.2
Q ss_pred cHHHHHHHHH--HHHhhhcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCC
Q 037064 71 CHAAQERQDA--VYKLVEEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 71 C~AT~~RQ~a--v~~La~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~ 122 (187)
+.....++.+ +.... +++|+|||+=+..|=| ++..-+.|++.|+|.++..+
T Consensus 30 g~~~~~~~~~~~l~~~i-~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKI-KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ecCCCCccchhHHHHhc-CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 3344455555 77777 5799999999999999 55666899999999888763
No 49
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=80.54 E-value=20 Score=26.32 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=58.5
Q ss_pred ccchhcHHHHH--HH----HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhch
Q 037064 66 SFNTICHAAQE--RQ----DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHG 139 (187)
Q Consensus 66 ~~nTIC~AT~~--RQ----~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~ 139 (187)
++++.|..... |+ +.+.++.. -..+++.+..+|+....|.......+.|++.+=++.
T Consensus 24 ~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~--------------- 86 (114)
T cd02958 24 LQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR--------------- 86 (114)
T ss_pred EecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc---------------
Confidence 45667744433 44 78888874 379999999999888888887777777766553321
Q ss_pred hhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHH
Q 037064 140 ELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVF 176 (187)
Q Consensus 140 ~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~ 176 (187)
+...|....|..+|+.++..+-.++.
T Consensus 87 -----------~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 87 -----------TGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred -----------cCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 12346777899999988887776654
No 50
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=80.39 E-value=3.3 Score=35.97 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=67.1
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE-eCCCCCCCC-CCcch-hhh--
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW-IDSEKRIGP-GNKMA-YKL-- 136 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~-Ie~~~eL~~-~~~~~-~~~-- 136 (187)
-++.+.|+=+....-++ ++++|.. +-.+..|+|+..|+++..+..++++.+++.+. ..+...|.. ..... ++.
T Consensus 41 i~lv~~D~~~~p~~a~~-~a~~Li~-~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~ 118 (347)
T cd06335 41 LELVERDDRGNPARGLQ-NAQELAA-DEKVVAVLGGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVS 118 (347)
T ss_pred EEEEeccCCCCcHHHHH-HHHHHhc-cCCeEEEEcCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEec
Confidence 36778899887777774 5567873 45678888999999999999999999988764 223333321 01111 111
Q ss_pred hch--hhhhhhcccc-C-CCcEEEEeeCCC-CcHHHHHHHHHHHHh
Q 037064 137 MHG--ELVEKENWLP-K-GQITIGVTAGAS-TPDKAIEGVLKKVFE 177 (187)
Q Consensus 137 ~~~--~~~~~~~wl~-~-~~~~IGITAGAS-TP~~lI~eVi~~l~~ 177 (187)
... +......|+. . +.++|+|..-.+ -...+.+.+.+.+.+
T Consensus 119 ~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~ 164 (347)
T cd06335 119 ADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAA 164 (347)
T ss_pred cChHHHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHH
Confidence 111 1112223331 1 357888886332 334556666666554
No 51
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=80.35 E-value=30 Score=29.02 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=57.0
Q ss_pred HHhhccCCCCCCCC-CCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhh
Q 037064 9 KFKKSVSKGFDPDI-DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVE 86 (187)
Q Consensus 9 ~~~~~~s~~~~~~~-~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~ 86 (187)
.|+-+|++...-.- +.+.|+++.- ++.-.-|.++...++....+ .| -.+.++++--. .++| ..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~I~vi~~-~~~~~f~~~~~~~i~~~~~~-~G-----~~~~~~~~~~d--~~~~~~~~~~l~~ 80 (295)
T PRK10653 10 VSAVALSATVSANAMAKDTIALVVS-TLNNPFFVSLKDGAQKEADK-LG-----YNLVVLDSQNN--PAKELANVQDLTV 80 (295)
T ss_pred HHHHHHHHhcCCccccCCeEEEEec-CCCChHHHHHHHHHHHHHHH-cC-----CeEEEecCCCC--HHHHHHHHHHHHH
Confidence 34444544332211 3467888873 45555678888777764333 22 22333332222 2333 34455555
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+|.+|+.+...+.. ....+.+++.|+|...+++.
T Consensus 81 ~~~dgiii~~~~~~~~-~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 81 RGTKILLINPTDSDAV-GNAVKMANQANIPVITLDRG 116 (295)
T ss_pred cCCCEEEEcCCChHHH-HHHHHHHHHCCCCEEEEccC
Confidence 5799888754322221 24456777788999999864
No 52
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=80.17 E-value=4 Score=35.31 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=35.1
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVT 158 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGIT 158 (187)
+.+..|. .+|+++|-|| |+.+|.+.-+..+. + ..| .+++.+|.-.+|..
T Consensus 75 ~~~~~l~--~ad~I~~~GG----nq~~l~~~l~~t~l-----------~--~~l------------~~~~~~G~vi~G~S 123 (250)
T TIGR02069 75 NAIALLS--NATGIFFTGG----DQLRITSLLGDTPL-----------L--DRL------------RKRVHEGIILGGTS 123 (250)
T ss_pred HHHHHHh--hCCEEEEeCC----CHHHHHHHHcCCcH-----------H--HHH------------HHHHHcCCeEEEcc
Confidence 3455554 6999999998 88888877754431 0 011 13343677889999
Q ss_pred eCCC
Q 037064 159 AGAS 162 (187)
Q Consensus 159 AGAS 162 (187)
|||.
T Consensus 124 AGA~ 127 (250)
T TIGR02069 124 AGAA 127 (250)
T ss_pred HHHH
Confidence 9986
No 53
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=80.04 E-value=2.4 Score=36.76 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=44.2
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
-++.+.||=|....- +.++++|.. +-.+..|||+..|+++..+..++++.+++.+..
T Consensus 41 v~lv~~D~~~~p~~a-~~~~~~Li~-~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (334)
T cd06356 41 VELVDYDTQSDNERY-QQYAQRLAL-QDKVDVVWGGISSASREAIRPIMDRTKQLYFYT 97 (334)
T ss_pred EEEEEECCCCCHHHH-HHHHHHHHH-hCCCCEEEeCcchHHHHHHHHHHHhcCceEEeC
Confidence 367788999987544 556678873 345777889999999999999999998776543
No 54
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=79.96 E-value=2.1 Score=32.89 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=43.2
Q ss_pred CChhhHHHHHHHHHhCCCeEEe----CCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-CcHHHHHHHHH
Q 037064 99 NSSNTSSLQVIAEDRGIPSYWI----DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS-TPDKAIEGVLK 173 (187)
Q Consensus 99 nSSNT~rL~eia~~~g~~t~~I----e~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS-TP~~lI~eVi~ 173 (187)
..+|..-|.+.+++.|...... +++++|.. .-..|+ ..+..|=+|+|+| +|+.++-+++.
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~--------------~l~~~~-~~~dliittGG~g~g~~D~t~~~l~ 80 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKE--------------ALREAL-ERADLVITTGGTGPGPDDVTPEAVA 80 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHH--------------HHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHH
Confidence 4779999999999999654322 22222221 223666 4677777777777 79999999998
Q ss_pred HHH
Q 037064 174 KVF 176 (187)
Q Consensus 174 ~l~ 176 (187)
.+.
T Consensus 81 ~~~ 83 (135)
T smart00852 81 EAL 83 (135)
T ss_pred HHh
Confidence 874
No 55
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=79.73 E-value=3.9 Score=39.59 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..+++.+++.|-+..+|.+|||||-.|- +..+|.|.+++.|.+.-.|-=+.-||
T Consensus 147 ~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTID 201 (539)
T TIGR02477 147 EEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTID 201 (539)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 5678999999988899999999999997 56688998888874333333344443
No 56
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=79.37 E-value=3.6 Score=35.34 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=66.3
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC-CCCCC-C-CCcchhhhhc
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS-EKRIG-P-GNKMAYKLMH 138 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~-~-~~~~~~~~~~ 138 (187)
-++.+.||=|....-++ ++++|. .+-.+..|+|+..|+++.....++.+.+++.+-... ...|. . .+.++..+-.
T Consensus 40 ielv~~D~~~~p~~a~~-~a~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~fr~~~~~ 117 (332)
T cd06344 40 LKVVIANDGNDPEIAKK-VADELV-KDPEILGVVGHYSSDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFFRTVPSN 117 (332)
T ss_pred EEEEEECCCCChHHHHH-HHHHHh-cccCceEEEcCCCcHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEEEeCCCc
Confidence 36778899998776664 667887 345678889999999999999999998877554322 33332 1 1111111111
Q ss_pred -hhhhhhhcccc-C-CCcEEEEeeCCCC--cHHHHHHHHHHHHh
Q 037064 139 -GELVEKENWLP-K-GQITIGVTAGAST--PDKAIEGVLKKVFE 177 (187)
Q Consensus 139 -~~~~~~~~wl~-~-~~~~IGITAGAST--P~~lI~eVi~~l~~ 177 (187)
.+...-.+|+. . +.++|++..-... ...+.+.+...+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~ 161 (332)
T cd06344 118 AVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLE 161 (332)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHH
Confidence 11222233331 1 2578887654333 34455555555544
No 57
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.09 E-value=33 Score=27.91 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=60.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh--
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT-- 103 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT-- 103 (187)
||++. ..+.-.-|..+..-+++...+ .| -.+.+.+ .+...++| +.++.|...++|.+|+.+..++...
T Consensus 2 Igvi~-~~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 72 (273)
T cd06292 2 VGLLV-PELSNPIFPAFAEAIEAALAQ-YG-----YTVLLCN--TYRGGVSEADYVEDLLARGVRGVVFISSLHADTHAD 72 (273)
T ss_pred EEEEe-CCCcCchHHHHHHHHHHHHHH-CC-----CEEEEEe--CCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccch
Confidence 34443 223445566676666654333 22 1122111 11122344 4567777778999999985433221
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCC-CCCCcchhhhhchhhhhhhccccCCCcEEEEeeCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRI-GPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL-~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
...++-+.+.|.|..+|++..+- .....+...............+..|.++|++-+|.
T Consensus 73 ~~~i~~~~~~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~ 131 (273)
T cd06292 73 HSHYERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGHRRIGFASGP 131 (273)
T ss_pred hHHHHHHHhCCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 22334445788999999864221 11011111111110111112223478899988775
No 58
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=79.08 E-value=36 Score=28.29 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh-
Q 037064 35 MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR- 113 (187)
Q Consensus 35 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~- 113 (187)
+.-.-|..+...+.+...+ .| -++.+.++- +. ...++.++.|...++|.+|+.+... ...+.++.++.
T Consensus 12 ~~~~f~~~~~~gi~~~~~~-~g-----y~~~i~~~~-~~-~~~~~~i~~l~~~~vdgiI~~~~~~---~~~~~~~~~~~~ 80 (265)
T cd06354 12 GDKSFNQSAWEGLERAAKE-LG-----IEYKYVESK-SD-ADYEPNLEQLADAGYDLIVGVGFLL---ADALKEVAKQYP 80 (265)
T ss_pred CchhHHHHHHHHHHHHHHH-cC-----CeEEEEecC-CH-HHHHHHHHHHHhCCCCEEEEcCcch---HHHHHHHHHHCC
Confidence 4455677787777664333 22 122322222 22 3345667788878999999987432 33455666554
Q ss_pred CCCeEEeCCCCCC-CCCCcchhhhhc-hhhhhhhcccc--CCCcEEEEeeCCC
Q 037064 114 GIPSYWIDSEKRI-GPGNKMAYKLMH-GELVEKENWLP--KGQITIGVTAGAS 162 (187)
Q Consensus 114 g~~t~~Ie~~~eL-~~~~~~~~~~~~-~~~~~~~~wl~--~~~~~IGITAGAS 162 (187)
+.|...|+...+- +....+...... +.... ..+. .|.++||+-+|..
T Consensus 81 ~~PiV~i~~~~~~~~~~~~v~~d~~~a~~~a~--~ll~~~~G~~~I~~i~~~~ 131 (265)
T cd06354 81 DQKFAIIDAVVDDPPNVASIVFKEEEGSFLAG--YLAALMTKTGKVGFIGGMD 131 (265)
T ss_pred CCEEEEEecccCCCCcEEEEEecchhHHHHHH--HHHHhhcCCCeEEEEeccc
Confidence 7888888774332 211122211111 22222 2221 2889999998754
No 59
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=78.72 E-value=33 Score=27.70 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=63.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++...+ .-.-|..+.+-+.+... ..+ -++..+++ ....++| +.++.+....+|.+|+.+...+. .
T Consensus 2 igvv~~~~-~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~---~ 69 (265)
T cd06299 2 IGVIVPDI-RNPYFASLATAIQDAAS-AAG-----YSTIIGNS--DENPETENRYLDNLLSQRVDGIIVVPHEQSA---E 69 (265)
T ss_pred EEEEecCC-CCccHHHHHHHHHHHHH-HcC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh---H
Confidence 56555432 33455666666655322 222 12222222 1223444 34555665689999999865432 2
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP 164 (187)
.++-+++.|+|...+++.-.=.....+.+.... +..... ..+..|.++|++-.|..+.
T Consensus 70 ~~~~l~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~-~l~~~g~~~I~~i~~~~~~ 128 (265)
T cd06299 70 QLEDLLKRGIPVVFVDREITGSPIPFVTSDPQPGMTEAVS-LLVALGHKKIGYISGPQDT 128 (265)
T ss_pred HHHHHHhCCCCEEEEecccCCCCCCEEEECcHHHHHHHHH-HHHHcCCCcEEEEeCCCCc
Confidence 356666788999988874221111122221111 111211 1122477899988876543
No 60
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.53 E-value=33 Score=27.96 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=63.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++..+ +.-.-|.++...+.+...+. |. .-.+.++ .+.-..++|.. +..+....+|.+|+.+...+.+...
T Consensus 2 Ig~v~~~-~~~~~~~~~~~gi~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~ 74 (271)
T cd06321 2 IGVSVGD-LGNPFFVALAKGAEAAAKKL-NP---GVKVTVV--SADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPA 74 (271)
T ss_pred eEEEecc-cCCHHHHHHHHHHHHHHHHh-CC---CeEEEEc--cCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHH
Confidence 5665543 44556777777776643332 10 1112222 22333455544 3444446899999876543334444
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhcccc---CCCcEEEEeeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLP---KGQITIGVTAGAS 162 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~---~~~~~IGITAGAS 162 (187)
+. .+++.|+|...++.... .....+.+.... ++... +||- .|..+||+.+|.-
T Consensus 75 i~-~~~~~~ipvv~~~~~~~-~~~~~V~~d~~~~g~~~~--~~l~~~~~g~~~i~~i~g~~ 131 (271)
T cd06321 75 VK-RAQAAGIVVVAVDVAAE-GADATVTTDNVQAGEISC--QYLADRLGGKGNVAILNGPP 131 (271)
T ss_pred HH-HHHHCCCeEEEecCCCC-CccceeeechHHHHHHHH--HHHHHHhCCCceEEEEeCCC
Confidence 54 45577899999976432 111112111111 22211 2221 2788999998853
No 61
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=78.27 E-value=27 Score=28.14 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 35 MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 35 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
+.-.-|..+.+.+.+...+. | -++.++++- +-...-.+.++++...++|.+|+. +.++..+...++.+++.+
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~-g-----~~v~~~~~~-~~~~~~~~~~~~~~~~~~dgii~~-~~~~~~~~~~l~~l~~~~ 80 (268)
T cd06323 9 LNNPFFVTLKDGAQKEAKEL-G-----YELTVLDAQ-NDAAKQLNDIEDLITRGVDAIIIN-PTDSDAVVPAVKAANEAG 80 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHc-C-----ceEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHCC
Confidence 44555677777776533332 2 122222221 111222356666555689999985 455554555556667788
Q ss_pred CCeEEeCCCC
Q 037064 115 IPSYWIDSEK 124 (187)
Q Consensus 115 ~~t~~Ie~~~ 124 (187)
+|...+++..
T Consensus 81 ipvv~~~~~~ 90 (268)
T cd06323 81 IPVFTIDREA 90 (268)
T ss_pred CcEEEEccCC
Confidence 9999997753
No 62
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=77.68 E-value=5.5 Score=38.92 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=76.2
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
.+.+.|.-|+-...=|..+++++ .+=..+|++|.++=.-+.-+.-.|. -+++.|++.+|++.
T Consensus 88 ~~~viDaTCP~V~k~~~~~~~~~-~~g~~ivi~G~~~HpEv~g~~g~~~---~~~~vv~~~~~~~~-------------- 149 (647)
T PRK00087 88 GLKVIDATCPFVKNIQKLAKKYY-EEGYQIVIVGDKNHPEVIGINGWCN---NSAIIVEDGEEAEK-------------- 149 (647)
T ss_pred CCeEEECCCcCchHHHHHHHHHH-hCCCEEEEEeCCCCCeeeeeccccC---CCEEEECCHHHHhh--------------
Confidence 36678999999999999999999 5789999999998888777776651 25899999999864
Q ss_pred hhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 143 EKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 143 ~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
|+ ....+++++=+--+.+..+++++.|.+
T Consensus 150 -----~~-~~~~~~~~~QTT~~~~~~~~~~~~l~~ 178 (647)
T PRK00087 150 -----LP-FDKKICVVSQTTEKQENFEKVLKELKK 178 (647)
T ss_pred -----CC-CCCCEEEEEcCCCcHHHHHHHHHHHHH
Confidence 32 346799999999999999999999875
No 63
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=77.23 E-value=6.7 Score=33.11 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 77 RQDAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-+.|. +.+ .++|++||||-.-+ .-...|...|++.|.+.+.|+-.
T Consensus 162 ~~~a~-~~~-~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 162 LREAI-EAA-KEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred HHHHH-HHH-hcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 34444 444 37999999998644 44567999999999998888753
No 64
>PLN02884 6-phosphofructokinase
Probab=77.15 E-value=4.5 Score=37.81 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhC--CCeEEeCCCCCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRG--IPSYWIDSEKRIG 127 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g--~~t~~Ie~~~eL~ 127 (187)
.+++++..|-+..+|.+|||||-.|-.+. +|.+.|++.| ++...| +.=||
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGI--PkTID 183 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGV--PKTID 183 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEec--ccccc
Confidence 58889999988899999999999998654 7788888877 555544 44444
No 65
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=76.93 E-value=38 Score=27.43 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=59.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL 106 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL 106 (187)
||++.- .+.-.-|.++...+++...+ .| -++.+.++ . +-++....|....+|.+|+++... +...
T Consensus 2 igvv~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~----~-~~~~~~~~l~~~~vdgii~~~~~~--~~~~- 66 (261)
T cd06272 2 IGLIWP-SVSRVALTELVTGINQAISK-NG-----YNMNVSIT----P-SLAEAEDLFKENRFDGVIIFGESA--SDVE- 66 (261)
T ss_pred EEEEec-CCCchhHHHHHHHHHHHHHH-cC-----CEEEEEec----c-cHHHHHHHHHHcCcCEEEEeCCCC--ChHH-
Confidence 455553 34555667777777664332 22 11111111 1 223344555546899999987532 2222
Q ss_pred HHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC
Q 037064 107 QVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 107 ~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA 161 (187)
++...+.+.|..++++... .....+...... ++.. -..++..|.++|++-.|.
T Consensus 67 ~~~~~~~~ipvV~~~~~~~-~~~~~V~~d~~~~~~~~-~~~l~~~g~~~i~~i~~~ 120 (261)
T cd06272 67 YLYKIKLAIPVVSYGVDYD-LKYPIVNVDNEKAMELA-VLYLAEKGHKKIAYIGDL 120 (261)
T ss_pred HHHHHHcCCCEEEEcccCC-CCCCEEEEChHHHHHHH-HHHHHHcCchhEEEeecc
Confidence 3445578899999987543 111112111111 2221 222233477889887654
No 66
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=76.80 E-value=53 Score=29.05 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=67.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHH--HHHHH-HHHHhhhcCCCEEEEEcCCCChh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAA--QERQD-AVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT--~~RQ~-av~~La~~~~D~miVVGG~nSSN 102 (187)
-||++.-...+ .-|.+++.-+.....+ .| +.+ .+|+.. .++++ .++.|...++|.+|+.| .++|
T Consensus 60 ~Ig~i~p~~~~-~~~~~i~~gi~~~~~~-~g-------y~~--~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~--~~~~ 126 (333)
T COG1609 60 TIGLVVPDITN-PFFAEILKGIEEAARE-AG-------YSL--LLANTDDDPEKEREYLETLLQKRVDGLILLG--ERPN 126 (333)
T ss_pred EEEEEeCCCCC-chHHHHHHHHHHHHHH-cC-------CEE--EEECCCCCHHHHHHHHHHHHHcCCCEEEEec--CCCC
Confidence 46766553333 6788888888763322 22 121 233333 23333 34555556899999999 3444
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
..+.+...+.+.|...|.....-.....+..-+..+--......+..|.++||+.+|..
T Consensus 127 -~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~ 185 (333)
T COG1609 127 -DSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPL 185 (333)
T ss_pred -HHHHHHHHhcCCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 44555555778999999986551111111111111111122233334789999999985
No 67
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=76.63 E-value=5.5 Score=38.67 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..+++.+++.|.+..+|.+|||||-.|- +..+|++.+++.|.+.-.|-=+.-||
T Consensus 152 ~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTID 206 (550)
T cd00765 152 EDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTID 206 (550)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 3567888888887789999999999986 56789999988884433344444444
No 68
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=76.19 E-value=39 Score=27.24 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=61.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHH-HHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA-AQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A-T~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.++. .-.-|..+...+++...+. + -.+.++.+ .+. ..+..+.+..|...++|.+|+.+..++.. .
T Consensus 2 i~vi~~~~-~~~~~~~~~~gi~~~~~~~-~-----~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~--~ 71 (264)
T cd01574 2 IGVVTTDL-ALHGPSSTLAAIESAAREA-G-----YAVTLSML-AEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD--A 71 (264)
T ss_pred EEEEeCCC-CcccHHHHHHHHHHHHHHC-C-----CeEEEEeC-CCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH--H
Confidence 67777653 3345666777666533321 2 11221110 111 22333445566656899999998765554 3
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA 161 (187)
+.+ ..+.|+|...++...+ .....+...... ++... ...+..|.++|++.+|.
T Consensus 72 ~~~-~~~~~ipvv~~~~~~~-~~~~~v~~d~~~~g~~~~-~~l~~~g~~~i~~i~~~ 125 (264)
T cd01574 72 ALA-AAPADVPVVFVDGSPS-PRVSTVSVDQEGGARLAT-EHLLELGHRTIAHVAGP 125 (264)
T ss_pred HHH-HHhcCCCEEEEeccCC-CCCCEEEeCcHHHHHHHH-HHHHHCCCCEEEEEecC
Confidence 333 3467899999987633 111111111111 22211 11122478899998874
No 69
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=76.13 E-value=30 Score=29.39 Aligned_cols=127 Identities=12% Similarity=0.002 Sum_probs=65.9
Q ss_pred eEEEEEcCCCChHHHHHH-HHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEI-GKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i-~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
||+++..-...-.-|... .+-+++ +.+.++ -++.+.+. +..+.+-++++++|+...+|++|+.|...+.
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~-~~~~~g-----v~~~~~e~-~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~--- 70 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKA-AEKALG-----VEVTYVEN-VPEGADAERVLRELAAQGYDLIFGTSFGFMD--- 70 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHH-HHHhcC-----CeEEEEec-CCchHhHHHHHHHHHHcCCCEEEECchhhhH---
Confidence 456666555544445444 222322 222222 22333322 2246678889999997789999997775554
Q ss_pred HHHHHHHHhCCCeEEeC-CCCCCCCCCcchhhhhchhh----hhhhccccCCCcEEEEeeCCCCcH
Q 037064 105 SLQVIAEDRGIPSYWID-SEKRIGPGNKMAYKLMHGEL----VEKENWLPKGQITIGVTAGASTPD 165 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie-~~~eL~~~~~~~~~~~~~~~----~~~~~wl~~~~~~IGITAGASTP~ 165 (187)
-+.++|++. |++.|+- +.. ....+......-..|. ..-..++ .+..+||+.+|...|.
T Consensus 71 ~~~~vA~~~-p~~~F~~~d~~-~~~~Nv~~~~~~~~e~~ylaG~~Aa~~-t~t~kVG~I~g~~~~~ 133 (258)
T cd06353 71 AALKVAKEY-PDVKFEHCSGY-KTAPNVGSYFARIYEGRYLAGVVAGKM-TKTNKVGYVAAFPIPE 133 (258)
T ss_pred HHHHHHHHC-CCCEEEECCCC-CCCCCeeeEechhhHHHHHHHHHHHHh-hcCCcEEEEcCcccHH
Confidence 555677666 5544333 221 1211211110001111 1223344 4567999999987774
No 70
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=75.74 E-value=11 Score=31.39 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 24 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..+|+|++--+-..++ ......+.|.+.-|- ++...+++ . -++....|. .+|++++-|| ||
T Consensus 31 ~~~i~~IptAs~~~~~---~~~~~~~a~~~l~G~-----~~~~~~~~--~---~~~~~~~l~--~ad~I~l~GG----~~ 91 (212)
T cd03146 31 RPKVLFVPTASGDRDE---YTARFYAAFESLRGV-----EVSHLHLF--D---TEDPLDALL--EADVIYVGGG----NT 91 (212)
T ss_pred CCeEEEECCCCCCHHH---HHHHHHHHHhhccCc-----EEEEEecc--C---cccHHHHHh--cCCEEEECCc----hH
Confidence 3589999877775444 333344433332021 22222221 1 233355554 6999999887 89
Q ss_pred HHHHHHHHHhC
Q 037064 104 SSLQVIAEDRG 114 (187)
Q Consensus 104 ~rL~eia~~~g 114 (187)
.+|.+.-++.+
T Consensus 92 ~~~~~~l~~~~ 102 (212)
T cd03146 92 FNLLAQWREHG 102 (212)
T ss_pred HHHHHHHHHcC
Confidence 99988887764
No 71
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.63 E-value=2.9 Score=35.68 Aligned_cols=56 Identities=21% Similarity=0.119 Sum_probs=42.4
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH-HHHHHHhCCCeEE
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL-QVIAEDRGIPSYW 119 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL-~eia~~~g~~t~~ 119 (187)
-++.+.|+=|....-.+ ++++|.. +-++..|||+..|+++..+ .+++.+.++|.+-
T Consensus 41 iel~~~D~~~~p~~a~~-~a~~li~-~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~ 97 (312)
T cd06346 41 VTLVTADTQTDPAAGVA-AATKLVN-VDGVPGIVGAACSGVTIAALTSVAVPNGVVMIS 97 (312)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHh-hcCCCEEEccccchhhHhhhhhhhccCCcEEEe
Confidence 36778899887766654 5556763 3456677799999999999 8999998887653
No 72
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=75.42 E-value=26 Score=28.09 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=62.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC-CC--CCCcchhh-hhc
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR-IG--PGNKMAYK-LMH 138 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e-L~--~~~~~~~~-~~~ 138 (187)
++.++|+=|.+.. -.+++++|....+|++ ||+..|.++..+.+++.+.++|.+....... +. ....+-+. +-.
T Consensus 42 ~~~~~d~~~~~~~-~~~~~~~l~~~~v~~i--ig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (298)
T cd06268 42 ELVVEDTQGDPEA-AAAAARELVDDGVDAV--IGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSD 118 (298)
T ss_pred EEEEecCCCCHHH-HHHHHHHHHhCCceEE--EcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCc
Confidence 4567788775554 3355666764456654 6888888888899999999999887766543 21 00111000 111
Q ss_pred -hhhhhhhcccc-CC-CcEEEEeeCCCC-cHHHHHHHHHHHHh
Q 037064 139 -GELVEKENWLP-KG-QITIGVTAGAST-PDKAIEGVLKKVFE 177 (187)
Q Consensus 139 -~~~~~~~~wl~-~~-~~~IGITAGAST-P~~lI~eVi~~l~~ 177 (187)
.+...-.+|+. .+ .++|++..+.+. .....+.+.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~ 161 (298)
T cd06268 119 AQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKK 161 (298)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHH
Confidence 11222334442 13 678999887654 22334444444443
No 73
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=75.31 E-value=6.2 Score=33.76 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=67.6
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC-CC-CC--Ccchhhhh
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR-IG-PG--NKMAYKLM 137 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e-L~-~~--~~~~~~~~ 137 (187)
-++.+.|+=|.+..-. +++++|+. .-.+..|||+..|+.+..+.+++++.++|.+....... +. .. ..++-.+-
T Consensus 45 i~l~~~D~~~~~~~a~-~~~~~li~-~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~ 122 (345)
T cd06338 45 VELIYYDDQSNPARAA-RAYERLIT-QDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPP 122 (345)
T ss_pred EEEEEecCCCCHHHHH-HHHHHHHh-hcCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCc
Confidence 3567889988877655 55567873 44677889999999999999999999988776654432 22 10 11110110
Q ss_pred c-hhhhhhhcccc-CC--CcEEEEeeCCC-CcHHHHHHHHHHHHhc
Q 037064 138 H-GELVEKENWLP-KG--QITIGVTAGAS-TPDKAIEGVLKKVFEI 178 (187)
Q Consensus 138 ~-~~~~~~~~wl~-~~--~~~IGITAGAS-TP~~lI~eVi~~l~~~ 178 (187)
. .+......|+. .+ .++|++..... -...+++.+...+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~ 168 (345)
T cd06338 123 ASQYAKSLLEMLVALDPRPKKVAILYADDPFSQDVAEGAREKAEAA 168 (345)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHHc
Confidence 0 11111223331 12 56788775432 3345666666666554
No 74
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.19 E-value=5.7 Score=34.21 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=43.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
++.+.|+-|....-+ +++++|.. +-.+.+|||+..|+.+..+.+++.+.++|.+-.
T Consensus 42 ~l~~~D~~~~~~~a~-~~~~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (344)
T cd06345 42 ELVFEDTEGSPEDAV-RAFERLVS-QDKVDAVVGGYSSEVVLALQDVAAENKVPFIVT 97 (344)
T ss_pred EEEEecCCCCHHHHH-HHHHHHhc-cCCceEEECCcchHHHHHHHHHHHHcCCcEEec
Confidence 677889999777665 45557763 345777899999999999999999999887643
No 75
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.98 E-value=32 Score=28.13 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=47.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHH-HhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVY-KLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~-~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.. +++-.-|..+.+-+++...+. +.....-.+.++++- .-.+.|.... .|....+|.+||.+...++ ...
T Consensus 2 Ig~i~~-~~~~~f~~~~~~gi~~~a~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vDgiii~~~~~~~-~~~ 76 (274)
T cd06311 2 IGVSIP-AADHGWTAGIVWHAQAAAKKL-EAAYPDVEFILVTAS--NDTEQQNAQQDLLINRKIDALVILPFESAP-LTQ 76 (274)
T ss_pred eeeecc-CCCCcHHHHHHHHHHHHHHHh-hhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCchh-hHH
Confidence 455543 345455666776666533221 100001122222221 1234454444 4665579999998653222 234
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
.++.+++.|+|...+++.
T Consensus 77 ~i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 77 PVAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHCCCeEEEEcCC
Confidence 445667889999998864
No 76
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=74.90 E-value=51 Score=27.91 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT 103 (187)
..|+++... +.-.-|.++...+.+...+ .| -++.+++ +..-.++|.. +..|....+|.+|++|...+
T Consensus 60 ~~Igvv~~~-~~~~f~~~l~~~i~~~~~~-~g-----~~~~i~~--~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--- 127 (329)
T TIGR01481 60 TTVGVIIPD-ISNIYYAELARGIEDIATM-YK-----YNIILSN--SDEDPEKEVQVLNTLLSKQVDGIIFMGGTIT--- 127 (329)
T ss_pred CEEEEEeCC-CCchhHHHHHHHHHHHHHH-cC-----CEEEEEe--CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 468888764 3334566677666653222 22 1222211 1122334433 44455568999999975432
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
..+.+...+.+.|..+++...+-.....+...... +..... ..+..|.++||+.+|..
T Consensus 128 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~~G~~~I~~i~g~~ 186 (329)
T TIGR01481 128 EKLREEFSRSPVPVVLAGTVDKENELPSVNIDYKQATKEAVG-ELIAKGHKSIAFVGGPL 186 (329)
T ss_pred hHHHHHHHhcCCCEEEEecCCCCCCCCEEEECcHHHHHHHHH-HHHHCCCCeEEEEecCc
Confidence 34455556778999988764321111111111111 122222 23335789999988754
No 77
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=74.38 E-value=23 Score=31.01 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchh---cHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+-.......++.+.+.|++. . ++.+|+-+ |. ..+=++++..+.+.++|++|-|||=..-
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~----------~~~~~~~~~~~p~-~~~v~~~~~~~~~~~~d~IIaiGGGs~~ 91 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-I----------AVHIFDGVGPNPT-FEEVKEAVERARAAEVDAVIAVGGGSTL 91 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-C----------cEEEeCCcCCCcC-HHHHHHHHHHHHhcCcCEEEEeCCchHH
Confidence 57888886655545556666666541 1 11112211 21 1223344444443579999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEeCCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+.|.+.+....|+|-+.|-+-
T Consensus 92 D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 92 DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHhcCCCCEEEEeCC
Confidence 9999988876668888888754
No 78
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=73.92 E-value=27 Score=28.78 Aligned_cols=87 Identities=9% Similarity=-0.039 Sum_probs=47.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.- .+.-.-|..+...+++...+ .| -++.++++-.+...+.| +.++.+....+|.+|+.+...... .
T Consensus 2 Igvi~~-~~~~~f~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~-~- 72 (268)
T cd06306 2 LCVLYP-HLKDAYWLSVNYGMVEEAKR-LG-----VSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGL-N- 72 (268)
T ss_pred eEEEcC-CCCCHHHHHHHHHHHHHHHH-cC-----CEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhH-H-
Confidence 555542 34455677777777654332 22 22333322111112233 466666667899999986433222 2
Q ss_pred HHHHHHHhCCCeEEeCC
Q 037064 106 LQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~ 122 (187)
.+..+++.|+|...+.+
T Consensus 73 ~~~~~~~~giPvV~~~~ 89 (268)
T cd06306 73 EILQQVAASIPVIALVN 89 (268)
T ss_pred HHHHHHHCCCCEEEecc
Confidence 34446678999988864
No 79
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=73.54 E-value=22 Score=31.79 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhc--HHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC--HAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC--~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+++.+|....... .-++.+.+.|+.. ..++.+|+.+. .-..+=++++..+....+|++|-|||-..-
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEA----------GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 5888888776554 4555676666541 11233444432 122233445545544579999999999999
Q ss_pred hhHHHHHHHHH
Q 037064 102 NTSSLQVIAED 112 (187)
Q Consensus 102 NT~rL~eia~~ 112 (187)
.+-|.+.+...
T Consensus 94 D~AK~va~~~~ 104 (370)
T cd08551 94 DTAKAIALLAT 104 (370)
T ss_pred HHHHHHHHHHh
Confidence 99999877653
No 80
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=73.03 E-value=4 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=38.8
Q ss_pred ccccchh-cHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 64 FISFNTI-CHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 64 ~~~~nTI-C~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
+.+.|+- |.+..- ..++.+|. .+ ++..|||+.+|+.+..+..+|.+.++|-..
T Consensus 39 ~~~~d~~~~~~~~a-~~~~~~li-~~-~V~aiiG~~~S~~~~av~~~~~~~~vP~Is 92 (327)
T cd06382 39 YDIKRVKPDDSFET-TKKVCDLL-QQ-GVAAIFGPSSSEASSIVQSICDAKEIPHIQ 92 (327)
T ss_pred EEEEEecCCCcHHH-HHHhhhhh-hc-CcEEEECCCChhHHHHHHHHHhccCCCcee
Confidence 3445554 444333 44556777 35 899999999999999999999999988544
No 81
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=72.89 E-value=2.5 Score=32.85 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHHhCCCeEEe----CCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-CcHHHHHHHH
Q 037064 98 WNSSNTSSLQVIAEDRGIPSYWI----DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS-TPDKAIEGVL 172 (187)
Q Consensus 98 ~nSSNT~rL~eia~~~g~~t~~I----e~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS-TP~~lI~eVi 172 (187)
...+|+.-|.+.+++.|...... ++.++|.. .-..|+ .....|=+|+|.| +|+++..+++
T Consensus 14 ~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~--------------~l~~~~-~~~D~VittGG~g~~~~D~t~~a~ 78 (144)
T PF00994_consen 14 IRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKE--------------ALRRAL-DRADLVITTGGTGPGPDDVTPEAL 78 (144)
T ss_dssp SEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHH--------------HHHHHH-HTTSEEEEESSSSSSTTCHHHHHH
T ss_pred eEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHH--------------HHHhhh-ccCCEEEEcCCcCcccCCcccHHH
Confidence 46899999999999998654443 33333321 224666 4556666666655 7899999998
Q ss_pred HHHHh
Q 037064 173 KKVFE 177 (187)
Q Consensus 173 ~~l~~ 177 (187)
..+..
T Consensus 79 ~~~~~ 83 (144)
T PF00994_consen 79 AEAGG 83 (144)
T ss_dssp HHHSS
T ss_pred HHhcC
Confidence 88754
No 82
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.73 E-value=40 Score=28.06 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+||++. .++.-.-|..+...+.+...+ .| -.+.+.++ ..-.++| +.+..|...++|.+|+++...+...
T Consensus 2 ~ig~i~-~~~~~~~~~~~~~gi~~~a~~-~g-----y~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~- 71 (280)
T cd06315 2 NIIFVA-SDLKNGGILGVGEGVREAAKA-IG-----WNLRILDG--RGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ- 71 (280)
T ss_pred eEEEEe-cccCCcHHHHHHHHHHHHHHH-cC-----cEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-
Confidence 567665 344545566777666653322 11 11222221 1122333 4566666679999999974433223
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
..++.+++.+.|...++..
T Consensus 72 ~~~~~~~~~~iPvV~~d~~ 90 (280)
T cd06315 72 AELELAQKAGIPVVGWHAG 90 (280)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 4445566788999888764
No 83
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=72.72 E-value=6.6 Score=33.97 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=68.3
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE-eCCCCCCCCCCcch-hhhh--
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW-IDSEKRIGPGNKMA-YKLM-- 137 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~-Ie~~~eL~~~~~~~-~~~~-- 137 (187)
-++.+.|+=|....-++ ++++|+. +-++..|||+..|+=+..+..++++.++|... .-+...|.....-. ++-.
T Consensus 42 i~lv~~D~~~~p~~a~~-~~~~li~-~~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~ 119 (333)
T cd06328 42 IEVIVKDDAGNPEVAVS-LARELIG-DDGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGR 119 (333)
T ss_pred EEEEEecCCCChHHHHH-HHHHHHH-hcCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecC
Confidence 35778899998888875 5557774 45677788999999999999999999988764 34445554211000 1111
Q ss_pred c--hhhhhhhccccCCCcEEEEe-eCCCCcHHHHHHHHHHHHhc
Q 037064 138 H--GELVEKENWLPKGQITIGVT-AGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 138 ~--~~~~~~~~wl~~~~~~IGIT-AGASTP~~lI~eVi~~l~~~ 178 (187)
. .+...-..++....++|++. ...+....+.+.+...+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~ 163 (333)
T cd06328 120 NSSQDAIAAAAALGKPGKKIATLAQDYAFGRDGVAAFKAALEKL 163 (333)
T ss_pred ChHHHHHHHHHHHHhcCCeEEEEecCccccHHHHHHHHHHHHhC
Confidence 0 11111112221224556655 33444567777777777643
No 84
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=72.08 E-value=50 Score=26.60 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=61.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++... +.-.-|..+.+.+++...+ .| -.+.+.. +.--..+| +.+..+....+|++|+++... +..
T Consensus 2 i~vi~~~-~~~~~~~~~~~~~~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~~~ 69 (268)
T cd06298 2 VGVIIPD-ITNSYFAELARGIDDIATM-YK-----YNIILSN--SDNDKEKELKVLNNLLAKQVDGIIFMGGKI---SEE 69 (268)
T ss_pred EEEEECC-CcchHHHHHHHHHHHHHHH-cC-----CeEEEEe--CCCCHHHHHHHHHHHHHhcCCEEEEeCCCC---cHH
Confidence 4555543 3344566677667653332 22 1122221 11112344 334455556899999997532 234
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
..+.+++.|.|...++....-.....+...... ++... .-.+..|.++|++.+|...
T Consensus 70 ~~~~l~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~-~~l~~~g~~~i~~l~~~~~ 127 (268)
T cd06298 70 HREEFKRSPTPVVLAGSVDEDNELPSVNIDYKKAAFEAT-ELLIKNGHKKIAFISGPLE 127 (268)
T ss_pred HHHHHhcCCCCEEEEccccCCCCCCEEEECcHHHHHHHH-HHHHHcCCceEEEEeCCcc
Confidence 555566778999998764221111111111111 22221 1112247789999987644
No 85
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=71.93 E-value=14 Score=34.54 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=75.8
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCC-Ccchhhhhchhhh
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPG-NKMAYKLMHGELV 142 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~-~~~~~~~~~~~~~ 142 (187)
+.+.|+-|+-...=|..+++++ ++=.-+|++|.++=.-+.-+.-.| | +++.|++.+|++.. +.+++.+-..+.-
T Consensus 133 l~iiDATCP~V~kvh~~v~~~~-~~Gy~iIIiG~~~HpEV~Gi~g~a---~-~~~VV~~~~e~~~l~~~~~~~~~~~~~~ 207 (387)
T PRK13371 133 CHIVDTTCPWVSKVWNTVEKHK-KKDFTSIIHGKYKHEETRATSSFA---G-TYLVVLDLEEAQYVADYILGGGDREEFL 207 (387)
T ss_pred CeEEecCCccchHHHHHHHHHH-hCCCEEEEEcCCCCcceeeecccc---C-ceEEECCHHHHHHHhhhhccccchhhhh
Confidence 5678999999999999999999 578889999999988888887776 3 57899999988631 0000000000000
Q ss_pred -----hhhcccc--CCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 143 -----EKENWLP--KGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 143 -----~~~~wl~--~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
....-|+ ....+|||.+=+-=+.+-.++++++|.+
T Consensus 208 ~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l~~ 249 (387)
T PRK13371 208 ERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLFER 249 (387)
T ss_pred hhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHHHH
Confidence 0000111 1137799999888898999999998864
No 86
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=71.75 E-value=7.2 Score=28.93 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=29.3
Q ss_pred HHHhhhcCCCEEEEEcCCCChhhHHH-HHHHHHhCCCeE
Q 037064 81 VYKLVEEKIDLILVVGGWNSSNTSSL-QVIAEDRGIPSY 118 (187)
Q Consensus 81 v~~La~~~~D~miVVGG~nSSNT~rL-~eia~~~g~~t~ 118 (187)
+..|. .||.|+..+|...|...+| +++|++.|.+.+
T Consensus 54 l~~L~--~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 54 LAMLS--DCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHH--hCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 33454 6999999999999998887 678888887765
No 87
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=71.69 E-value=5.5 Score=35.72 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=40.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc--------------CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE--------------KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~--------------~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++.++|+ |.. ..=..++.+|... +-.+..|||+..|+-+..+..+|.+.++|-+-
T Consensus 68 ~~~~~D~-~~~-~~a~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is 136 (410)
T cd06363 68 GYEIFDH-CSD-SANFPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTLALTVAPLFSFFLIPQIS 136 (410)
T ss_pred ceEEEec-CCc-HHHHHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHHHHHHHHHhccccccccc
Confidence 4567777 883 3345566676621 24688999999999999999999999887553
No 88
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=71.64 E-value=25 Score=28.60 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=43.6
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGV 157 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGI 157 (187)
+.+..|....+|.+|+.+...+++ .+. .+++.|.|...++...+=.....+..-... +... -+..+..|.++||+
T Consensus 46 ~~i~~l~~~~vdgiii~~~~~~~~--~~~-~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~-~~~l~~~g~~~i~~ 121 (264)
T cd06274 46 ETVETLIARQVDALIVAGSLPPDD--PYY-LCQKAGLPVVALDRPGDPSRFPSVVSDNRDGAAEL-TRELLAAPPEEVLF 121 (264)
T ss_pred HHHHHHHHcCCCEEEEcCCCCchH--HHH-HHHhcCCCEEEecCccCCCCCCEEEEccHHHHHHH-HHHHHHCCCCcEEE
Confidence 445556667899999998754443 233 456788999999776431111111111111 1111 11122247889999
Q ss_pred eeCC
Q 037064 158 TAGA 161 (187)
Q Consensus 158 TAGA 161 (187)
-+|.
T Consensus 122 i~~~ 125 (264)
T cd06274 122 LGGL 125 (264)
T ss_pred EeCC
Confidence 8774
No 89
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.56 E-value=31 Score=28.56 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
|+|+++.+ +.-.-|..+...+.+...+ .| -.+.+.+ +.-..++| +.+..+....+|.+|+.+. ++.-..
T Consensus 1 ~~~~~~~~-~~~~f~~~~~~gi~~~~~~-~G-----~~~~~~~--~~~d~~~~~~~i~~~~~~~vdgiii~~~-~~~~~~ 70 (272)
T cd06313 1 KAAFSNIG-LQATWCAQGKQAADEAGKL-LG-----VDVTWYG--GALDAVKQVAAIENMASQGWDFIAVDPL-GIGTLT 70 (272)
T ss_pred Ccceeecc-cCChHHHHHHHHHHHHHHH-cC-----CEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCC-ChHHhH
Confidence 46777766 5556677777777654322 22 1222221 12234555 3455566578999999754 222234
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
.+++-+.+.|+|..++++.
T Consensus 71 ~~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 71 EAVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHHCCCcEEEeCCC
Confidence 4555666788999999864
No 90
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=71.18 E-value=2.3 Score=33.50 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=26.6
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
..++....+.++....|. .+|++++-|| ||.+|...-++.+
T Consensus 17 ~~l~~~~~~~~~~~~~i~--~ad~I~~~GG----~~~~l~~~l~~t~ 57 (154)
T PF03575_consen 17 DQLDLSDRNDADILEAIR--EADAIFLGGG----DTFRLLRQLKETG 57 (154)
T ss_dssp EECCCTSCGHHHHHHHHH--HSSEEEE--S-----HHHHHHHHHHTT
T ss_pred EEEeccCCChHHHHHHHH--hCCEEEECCC----CHHHHHHHHHhCC
Confidence 344444445556666664 6999999998 8999988887764
No 91
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=70.92 E-value=6.8 Score=33.77 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=42.7
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
-++.+.||-|....-.+ ++++|.. +-.+..|||+..|+.+..+..++.+.++|-.-
T Consensus 40 i~~~~~D~~~~~~~a~~-~a~~l~~-~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~ 95 (350)
T cd06366 40 LVLHVRDSKCDPVQAAS-AALDLLE-NKPVVAIIGPQCSSVAEFVAEVANEWNVPVLS 95 (350)
T ss_pred EEEEecCCCCCHHHHHH-HHHHHhc-cCCceEEECCCcHHHHHHHHHHhhcCCeeEEe
Confidence 35678899888765555 4456663 45677889999999999999999999887544
No 92
>PLN02564 6-phosphofructokinase
Probab=70.91 E-value=9.8 Score=36.50 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
...+++++..|-+..+|.+|||||-.|-.+ .+|++-+++.|.+.-.|-=+.=||
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTID 216 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTID 216 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEeccccc
Confidence 348899999998889999999999999866 478888888887754565566676
No 93
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=70.70 E-value=8.9 Score=33.28 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=43.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
++.+.|+=|.+..-. +++++|. .+-++..|||+..|+.+..+..+|.+.++|..-..
T Consensus 45 ~lv~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~ 101 (347)
T cd06340 45 ELVFGDSQGNPDIGA-TEAERLI-TEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDG 101 (347)
T ss_pred EEEEecCCCCHHHHH-HHHHHHh-ccCCceEEecccchHhHHHHHHHHHHhCCCEEecc
Confidence 455677777665554 4566777 35688889999999999999999999998876554
No 94
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=70.67 E-value=37 Score=28.90 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=51.6
Q ss_pred EcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHHHHHH
Q 037064 31 NQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSSLQVI 109 (187)
Q Consensus 31 sQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~rL~ei 109 (187)
..+++.-+-|..+.+.+++...+. | -++.+.++ .....+| +.+..|..+++|.+|+++.. ++-....++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~a~~~-g-----~~v~~~~~--~~~~~~q~~~i~~l~~~~vDgIIi~~~~-~~~~~~~l~~ 74 (302)
T TIGR02634 4 SIDDLRLERWQKDRDIFVAAAESL-G-----AKVFVQSA--NGNEAKQISQIENLIARGVDVLVIIPQN-GQVLSNAVQE 74 (302)
T ss_pred ecCccchhhHHHHHHHHHHHHHhc-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhHHHHHHHH
Confidence 456777778888888887643332 2 12222211 2123444 45666666789999998643 2223455666
Q ss_pred HHHhCCCeEEeCCCC
Q 037064 110 AEDRGIPSYWIDSEK 124 (187)
Q Consensus 110 a~~~g~~t~~Ie~~~ 124 (187)
+++.|+|...+++..
T Consensus 75 ~~~~~iPvV~~d~~~ 89 (302)
T TIGR02634 75 AKDEGIKVVAYDRLI 89 (302)
T ss_pred HHHCCCeEEEecCcC
Confidence 778899998887653
No 95
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=70.63 E-value=56 Score=26.50 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=48.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+|+++..+ ++-.-|..+.+.+.+...+ .| -.+.++++--. ...-.+.+..+....+|.+|+..+..+.+...
T Consensus 1 ~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~~~-~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd06305 1 RIAVVRYG-GSGDFDQAYLAGTKAEAEA-LG-----GDLRVYDAGGD-DAKQADQIDQAIAQKVDAIIIQHGRAEVLKPW 72 (273)
T ss_pred CeEEEeec-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEecCChhhhHHH
Confidence 35666543 3333455666666543222 22 22333333221 12223455556557899999987644444444
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
.+.+++.|+|...+++.
T Consensus 73 -i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 73 -VKRALDAGIPVVAFDVD 89 (273)
T ss_pred -HHHHHHcCCCEEEecCC
Confidence 44566788998888874
No 96
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=70.59 E-value=39 Score=27.81 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.0
Q ss_pred HhhhcCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 83 KLVEEKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 83 ~La~~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.++ .+-|++|+|-.. +|.|+...++.|+++|.++..|.+..+
T Consensus 107 ~~~-~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 107 AVG-REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred HhC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 455 478999988754 789999999999999999999988654
No 97
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=70.59 E-value=7.6 Score=34.00 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=42.8
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
-++.+.|+=+...+-.+ ++++|.. +-++.+|||+.+|+.+..+.+++.+.+++.+-
T Consensus 43 i~lv~~D~~~~p~~a~~-~a~~li~-~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 98 (357)
T cd06337 43 VEIIVRDSQSNPNRAGL-VAQELIL-TDKVDLLLAGGTPDTTNPVSDQCEANGVPCIS 98 (357)
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHh-ccCccEEEecCCcchhhHHHHHHHHhCCCeEE
Confidence 35668899998887774 5557773 44566778999999998999999999987654
No 98
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=70.58 E-value=52 Score=26.43 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=60.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHH-HHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQER-QDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~R-Q~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++-.. +.-.-+..+.+.+.+...+ .| -++.++++ .-..++ ++.++.|...++|.+|+.+...+ ..
T Consensus 2 Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~~ 69 (268)
T cd01575 2 VAVLVPS-LSNSVFADVLQGISDVLEA-AG-----YQLLLGNT--GYSPEREEELLRTLLSRRPAGLILTGLEHT---ER 69 (268)
T ss_pred EEEEeCC-CcchhHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCchhHHHHHHHHHHcCCCEEEEeCCCCC---HH
Confidence 4555543 3334556666666543222 22 12222221 112233 34556666568999999985433 34
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccc-cCCCcEEEEeeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWL-PKGQITIGVTAGAS 162 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl-~~~~~~IGITAGAS 162 (187)
..+.+.+.|.|...+.+..+-.....+ ..+.......--++| ..|.++||+-+|-.
T Consensus 70 ~~~~~~~~~ipvv~~~~~~~~~~~~~v-~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~ 126 (268)
T cd01575 70 TRQLLRAAGIPVVEIMDLPPDPIDMAV-GFSHAEAGRAMARHLLARGYRRIGFLGARM 126 (268)
T ss_pred HHHHHHhcCCCEEEEecCCCCCCCCeE-EeCcHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 556667788998888654211100001 111111111111233 24788999887654
No 99
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=70.58 E-value=49 Score=27.11 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=47.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+|+++.- ..-.-|..+...+.+...+ .+ -++.++.+ .+...++| +.+..|....+|.+|+.+....+...
T Consensus 1 ~i~~v~~--~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~ 71 (271)
T cd06314 1 TIAVVTN--GASPFWKIAEAGVKAAGKE-LG-----VDVEFVVP-QQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIP 71 (271)
T ss_pred CeEEEcC--CCcHHHHHHHHHHHHHHHH-cC-----CeEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHH
Confidence 3677763 2345577777777653322 22 12222210 01133444 34555655689999998754322233
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
.|.++ .+ ++|...++..
T Consensus 72 ~l~~~-~~-~ipvV~~~~~ 88 (271)
T cd06314 72 ALNKA-AA-GIKLITTDSD 88 (271)
T ss_pred HHHHH-hc-CCCEEEecCC
Confidence 44444 45 8999999764
No 100
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=70.50 E-value=53 Score=26.74 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=49.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhc--ccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKF--GVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
|||++... ++-.-|..+...+++...+.. |. ..++.++++ .-...+| +.++++...++|.+|+.+.- +..
T Consensus 1 ~Ig~i~~~-~~~~~~~~~~~~i~~~~~~~~~~g~---~~~l~i~~~--~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~ 73 (272)
T cd06300 1 KIGLSNSY-AGNTWRAQMLDEFKAQAKELKKAGL---ISEFIVTSA--DGDVAQQIADIRNLIAQGVDAIIINPAS-PTA 73 (272)
T ss_pred CeEEeccc-cCChHHHHHHHHHHHHHHhhhccCC---eeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhh
Confidence 56766633 344556667766655332210 10 002222221 1122333 44555555689999998743 222
Q ss_pred hHHHHHHHHHhCCCeEEeCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~ 123 (187)
...+++.+++.|+|...+...
T Consensus 74 ~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 74 LNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred hHHHHHHHHHCCCeEEEEecC
Confidence 344666777889999888764
No 101
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.46 E-value=51 Score=26.48 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc--hhhhhhhccc-cCCCcEEE
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH--GELVEKENWL-PKGQITIG 156 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~--~~~~~~~~wl-~~~~~~IG 156 (187)
.++.+....+|++|+++...+ +. ..++.+++.|+|..++++..+-.....+ ..+.. ++... ++| ..|..+||
T Consensus 47 ~i~~~~~~~vdgiii~~~~~~-~~-~~~~~~~~~~ipvV~~~~~~~~~~~~~v-~~d~~~~~~~~~--~~l~~~g~~~i~ 121 (268)
T cd06289 47 LLSTMLEHGVAGIILCPAAGT-SP-DLLKRLAESGIPVVLVAREVAGAPFDYV-GPDNAAGARLAT--EHLISLGHRRIA 121 (268)
T ss_pred HHHHHHHcCCCEEEEeCCCCc-cH-HHHHHHHhcCCCEEEEeccCCCCCCCEE-eecchHHHHHHH--HHHHHCCCCCEE
Confidence 445555567999999976322 22 3556677889999988764221110101 11111 22221 222 24678899
Q ss_pred EeeCCCC--c-HHHHHHHHHHHHh
Q 037064 157 VTAGAST--P-DKAIEGVLKKVFE 177 (187)
Q Consensus 157 ITAGAST--P-~~lI~eVi~~l~~ 177 (187)
+.+|... . ...++...+.|.+
T Consensus 122 ~l~~~~~~~~~~~r~~gf~~~l~~ 145 (268)
T cd06289 122 FIGGLEDSSTRRERLAGYRAALAE 145 (268)
T ss_pred EecCCccccchHHHHHHHHHHHHH
Confidence 9876432 1 2334555555544
No 102
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=70.44 E-value=12 Score=36.86 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+++.+++.|-+...|.+|||||-.|- +..+|+|.+++.|.+.-.|-=+.-||
T Consensus 160 e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTID 213 (610)
T PLN03028 160 EQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLN 213 (610)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeee
Confidence 467888888887899999999999997 66789998888754444444455555
No 103
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=69.98 E-value=14 Score=30.95 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+..|+.- ......++|. +.+ .++|++||||-.-+ .-...|...+++.|.+.+.|.-.
T Consensus 133 ~VV~FgE~-lp~~~~~~a~-~~~-~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 133 TIVDFGER-LPPENWMGAA-AAA-CRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred cEEECCCC-CCHHHHHHHH-HHH-hcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 45555541 1222345555 444 37999999998544 44566888999999898888763
No 104
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=69.71 E-value=6.3 Score=34.38 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=41.7
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
-++.+.||=+.+..-.+ ++++|.. +-++.+|+|+..|+.+..+..++.+.+.+-
T Consensus 41 ielv~~D~~~~p~~a~~-~a~~Li~-~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~ 94 (348)
T cd06355 41 IEAVVEDGASDWPTFAE-KARKLLT-QDKVAAVFGCWTSASRKAVLPVFERHNGLL 94 (348)
T ss_pred EEEEEeCCCCCHHHHHH-HHHHHHH-hCCCcEEEeccchhhHHHHHHHHhccCCce
Confidence 35778899998876664 5556763 446777789999999999999999887653
No 105
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=69.70 E-value=17 Score=31.73 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=46.0
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE-EeCCCCCC
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY-WIDSEKRI 126 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~-~Ie~~~eL 126 (187)
-++.+.|+=|....-.+.+.+-+. +-.+..|||+..|+-+.....++.+.++|-. ...+...+
T Consensus 42 l~~~~~D~~~~~~~a~~~a~~l~~--~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~ 105 (389)
T cd06352 42 FTFVYLDTECSESVALLAAVDLYW--EHNVDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSL 105 (389)
T ss_pred EEEEEecCCCchhhhHHHHHHHHh--hcCCcEEECCCChhHHHHHHHHHhcCCCCEeccccccccc
Confidence 356788999988777777765544 3345678899999999999999999888754 23333444
No 106
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=69.26 E-value=60 Score=26.64 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=63.2
Q ss_pred eEEEEEcC-CCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 26 KVGIANQT-TMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 26 kv~vvsQT-T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
||+++.-. .++-.-|..+...+.+...+ .+ -++.+.++- . .++| +.++.|...++|.+|+++.. ..
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~g-----y~~~~~~~~-~--~~~~~~~~~~l~~~~vdgiii~~~~---~~ 68 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LG-----VEVKYVESV-E--DADYEPNLRQLAAQGYDLIFGVGFG---FM 68 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cC-----ceEEEEecC-C--HHHHHHHHHHHHHcCCCEEEECCcc---hh
Confidence 46655543 45556677787777664333 22 123333222 2 2333 34555665679999997532 23
Q ss_pred HHHHHHHHHh-CCCeEEeCCCCCC-CCCCcchhhh-hchhhhhhhccccC--CCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDR-GIPSYWIDSEKRI-GPGNKMAYKL-MHGELVEKENWLPK--GQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~-g~~t~~Ie~~~eL-~~~~~~~~~~-~~~~~~~~~~wl~~--~~~~IGITAGAST 163 (187)
..+.++.++. ++|...++...+- .....+..-. ..+.... ..+.. |..+||+-+|..+
T Consensus 69 ~~~~~~~~~~~~ipvv~~~~~~~~~~~~~~v~~d~~~~~~~a~--~l~~~~~g~~~I~~i~~~~~ 131 (260)
T cd06304 69 DAVEKVAKEYPDVKFAIIDGVVDAPPNVASYVFREYEGSYLAG--VLAALMTKTGKVGFVGGMPI 131 (260)
T ss_pred HHHHHHHHHCCCCEEEEecCccCCCCCeeeeecchHHHHHHHH--HHHHHhccCCceEEEecccc
Confidence 4555666543 6788888764322 1101111111 1122222 12212 7889999988543
No 107
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=69.21 E-value=7.7 Score=32.97 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=40.3
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
|.+++-||+.+.. +-++++|+++|++.+++|.-- |.+. .++.......|+ -....|+-+-+|.|...
T Consensus 1 d~v~~wg~~~~~~-~~~~~~a~~~~i~~~~~E~G~-lR~~-------~~~~~~~~P~s~--~~D~~Gv~~~s~~~~~~ 67 (269)
T PF05159_consen 1 DAVVVWGDKRPYH-RAAIEVAKELGIPVIFFEDGF-LRSI-------GLGSDGYPPDSL--TIDPQGVNADSSLPSDL 67 (269)
T ss_pred CEEEEECCCccHH-HHHHHHHHHhCCCEEEEecCc-cccc-------cccccCCCCeEE--EECCCCccCCCCCcccH
Confidence 7888888865543 456799999999999998642 2100 000000111444 24567888888766543
No 108
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=69.13 E-value=58 Score=27.45 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=49.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.- +++-.-|..+.+.+++...+ +| -.+.+. ..+....+.| +.+..+...++|.+|+++ .+++....
T Consensus 2 I~vi~~-~~~~~f~~~i~~gi~~~a~~-~g-----~~v~~~-~~~~~d~~~~~~~i~~~~~~~~DgiIi~~-~~~~~~~~ 72 (298)
T cd06302 2 IAFVPK-VTGIPYFNRMEEGAKEAAKE-LG-----VDAIYV-GPTTADAAGQVQIIEDLIAQGVDAIAVVP-NDPDALEP 72 (298)
T ss_pred EEEEEc-CCCChHHHHHHHHHHHHHHH-hC-----CeEEEE-CCCCCCHHHHHHHHHHHHhcCCCEEEEec-CCHHHHHH
Confidence 565553 34455677777777663333 32 111110 0011122333 445455445899999985 44555556
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+++.+++.|+|...+++.
T Consensus 73 ~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 73 VLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHCCCeEEEEcCC
Confidence 666777889999888864
No 109
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=68.90 E-value=7.3 Score=33.41 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=42.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
++.+.|+-|....-. +++++|.. +-++.+|+|+..|+++..+..++++.+++.+--
T Consensus 41 ~l~~~D~~~~p~~a~-~~~~~l~~-~~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 96 (334)
T cd06327 41 ELVVADHQNKADVAA-AKAREWID-RDGVDMIVGGPNSAVALAVQEVAREKKKIYIVT 96 (334)
T ss_pred EEEEecCCCCchHHH-HHHHHHHh-hcCceEEECCccHHHHHHHHHHHHHhCceEEec
Confidence 566788888665554 45667773 446777889999999999999999998876543
No 110
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=68.60 E-value=5.2 Score=34.61 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=66.5
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH-------HHHHHHhCCCeEEeCC-CCCCCCC----
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL-------QVIAEDRGIPSYWIDS-EKRIGPG---- 129 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL-------~eia~~~g~~t~~Ie~-~~eL~~~---- 129 (187)
-++.+.||=|....-.+. +++|.. + ++..|||+..|.++..+ ..++.+.+++.+.... ...+...
T Consensus 41 i~l~~~D~~~~p~~a~~~-a~~lv~-~-~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~ 117 (342)
T cd06329 41 IELVEEDNKGSPQEALRK-AQKAID-D-GVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSF 117 (342)
T ss_pred EEEEeccCCCChHHHHHH-HHHHHH-h-CCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcc
Confidence 356788999988877755 456664 5 78889999999999999 6666667766554432 2233210
Q ss_pred Ccchhhh-hchhhhhhhccccC--CCcEEEEeeC-CCCcHHHHHHHHHHHHh
Q 037064 130 NKMAYKL-MHGELVEKENWLPK--GQITIGVTAG-ASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~wl~~--~~~~IGITAG-ASTP~~lI~eVi~~l~~ 177 (187)
+..+--+ -..+...-.+|+.. +.++|+|... .+......+.+...+.+
T Consensus 118 ~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~ 169 (342)
T cd06329 118 WHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAA 169 (342)
T ss_pred eEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1110000 00122233345422 3678888864 33455566666666665
No 111
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=68.33 E-value=17 Score=29.90 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=37.5
Q ss_pred HHHHHHHhhhcCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 77 RQDAVYKLVEEKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
...+++.+. ++|++||||= -.-.+.+.|++.+.+.|.+.+.|+-...
T Consensus 160 ~~~~~~~~~--~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~ 207 (222)
T cd00296 160 FDRALEALL--EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPT 207 (222)
T ss_pred HHHHHHHHh--cCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCC
Confidence 566777765 5999999995 5667899999999888889998876543
No 112
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=68.06 E-value=6.6 Score=30.26 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHhCCCeEEeC----CCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-CcHHHHHHHHH
Q 037064 99 NSSNTSSLQVIAEDRGIPSYWID----SEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS-TPDKAIEGVLK 173 (187)
Q Consensus 99 nSSNT~rL~eia~~~g~~t~~Ie----~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS-TP~~lI~eVi~ 173 (187)
.-+|+.-|.+++++.|....... +.++|. ..-..|+ ..+..|=+|+|+| +|+..+-+++.
T Consensus 17 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~--------------~~i~~~~-~~~DlvittGG~g~g~~D~t~~ai~ 81 (133)
T cd00758 17 EDTNGPALEALLEDLGCEVIYAGVVPDDADSIR--------------AALIEAS-READLVLTTGGTGVGRRDVTPEALA 81 (133)
T ss_pred EEchHHHHHHHHHHCCCEEEEeeecCCCHHHHH--------------HHHHHHH-hcCCEEEECCCCCCCCCcchHHHHH
Confidence 46799999999999986544332 222221 1223566 4566666666655 47888888887
Q ss_pred HHH
Q 037064 174 KVF 176 (187)
Q Consensus 174 ~l~ 176 (187)
.+.
T Consensus 82 ~~g 84 (133)
T cd00758 82 ELG 84 (133)
T ss_pred Hhc
Confidence 764
No 113
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=67.96 E-value=15 Score=32.01 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+.|.+.+. ++|++||||-.-+-. ...|.+.++++|.+.+.|+-.
T Consensus 194 ~~~~a~~~~~--~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~ 240 (260)
T cd01409 194 RVVTAAARLA--EADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIG 240 (260)
T ss_pred HHHHHHHHHh--cCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCC
Confidence 3455655553 699999999866555 478999999999999888753
No 114
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=67.77 E-value=54 Score=26.98 Aligned_cols=86 Identities=10% Similarity=0.027 Sum_probs=47.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.-. +.-.-|..+.+.+.+...+ .| -.+.++++= ..++| +.+..+....+|.+|+.+.- +.-...
T Consensus 2 Ig~v~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~---~~~~~~~~i~~~~~~~~dgiii~~~~-~~~~~~ 70 (289)
T cd01540 2 IGFIVKQ-PEEPWFQTEWKFAKKAAKE-KG-----FTVVKIDVP---DGEKVLSAIDNLGAQGAKGFVICVPD-VKLGPA 70 (289)
T ss_pred eeeecCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEccCC---CHHHHHHHHHHHHHcCCCEEEEccCc-hhhhHH
Confidence 5555532 3333455666655543222 22 123333222 22334 45566665679999998743 333456
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+++.+++.|+|...+++.
T Consensus 71 ~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 71 IVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred HHHHHHhCCCeEEEecCC
Confidence 667777899999888753
No 115
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=67.72 E-value=33 Score=30.08 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=41.7
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.||=+...+-+ .++++|.. +=++..|||+..|+++..+..++.+.+++.+
T Consensus 42 elv~~D~~~~p~~a~-~~a~~li~-~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~ 95 (360)
T cd06357 42 EPVEYDPGGDPDAYR-ALAERLLR-EDGVRVIFGCYTSSSRKAVLPVVERHDALLW 95 (360)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHh-hCCCcEEEeCccHHHHHHHHHHHHhcCceEE
Confidence 577889999887777 45667773 4556667899999999999999998875544
No 116
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=67.37 E-value=28 Score=29.92 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc----CCCcEEEEeeCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP----KGQITIGVTAGAST 163 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~IGITAGAST 163 (187)
.++++|.-- -+-.--.++++.|++.+....-+++++.=+ -++| .+.-+|+|++|+..
T Consensus 85 g~~LViaAT-dD~~vN~~I~~~a~~~~~lvn~vd~p~~~d------------------Fi~PAiv~rg~l~IaIST~G~s 145 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRKHCDRLYKLYIDCSDYKKGL------------------CIIPYQRSTKNFVFALNTKGGS 145 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHHHHHHcCCeEEEcCCcccCe------------------EEeeeEEecCCEEEEEECCCcC
Confidence 355544443 355566789999999887777777765422 2333 46789999999998
Q ss_pred cHHHHHHHHHHHHh
Q 037064 164 PDKAIEGVLKKVFE 177 (187)
Q Consensus 164 P~~lI~eVi~~l~~ 177 (187)
|- +...+-+.|++
T Consensus 146 P~-lar~lR~~ie~ 158 (223)
T PRK05562 146 PK-TSVFIGEKVKN 158 (223)
T ss_pred cH-HHHHHHHHHHH
Confidence 84 33444444443
No 117
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=66.86 E-value=7.8 Score=34.79 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=42.0
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
-++.+.|+=+....-++. +++|.. +-.+.+|||+..|+.+..+..++.+.+++.+
T Consensus 42 ielv~~D~~~~p~~a~~~-a~~li~-~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i 96 (374)
T TIGR03669 42 IELIDPDPQSDNERYQEL-TRRLLN-RDKVDALWAGYSSATREAIRPIIDRNEQLYF 96 (374)
T ss_pred eEEEEeCCCCCHHHHHHH-HHHHHH-hCCCCEEEcCCchHHHHHHHHHHHhcCceEE
Confidence 367788998887766644 456663 3346668999999999999999999887655
No 118
>PRK14071 6-phosphofructokinase; Provisional
Probab=66.82 E-value=11 Score=34.47 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
..++.++..|.+..+|.+|+|||-.|-.+-+ ++++..+.+.+.|
T Consensus 94 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~--~L~~~~~i~vIgi 137 (360)
T PRK14071 94 DRSQEIIDGYHSLGLDALIGIGGDGSLAILR--RLAQQGGINLVGI 137 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH--HHHHhcCCcEEEe
Confidence 4678899999888999999999999987653 3343347777766
No 119
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=66.80 E-value=43 Score=27.39 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+.++.|....+|.+|+.+. ++.....+++.+.+.++|...+++.
T Consensus 46 ~~i~~l~~~~vdgiIi~~~-~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 46 SAIRSFIAQGVDVIILAPV-VETGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred HHHHHHHHcCCCEEEEcCC-ccccchHHHHHHHHCCCCEEEEecC
Confidence 5566666678999998654 3333344566677889999999874
No 120
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.77 E-value=68 Score=26.03 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=60.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL 106 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL 106 (187)
||++... +.-.-|..+.+.+.....+ .| -.+.++++ .+....-.+.+..|...++|.+||.+-..... +
T Consensus 2 Ig~i~p~-~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~---~ 70 (263)
T cd06280 2 VGLIVAD-IRNPFFTAVSRAVEDAAYR-AG-----LRVILCNT-DEDPEKEAMYLELMEEERVTGVIFAPTRATLR---R 70 (263)
T ss_pred EEEEecc-cccccHHHHHHHHHHHHHH-CC-----CEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCch---H
Confidence 4555533 3334566676666553222 22 12222211 11222222445666666799999987543332 2
Q ss_pred HHHHHHhCCCeEEeCCCCCCCCCCcchhhh-hc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 107 QVIAEDRGIPSYWIDSEKRIGPGNKMAYKL-MH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 107 ~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~-~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
.++ ...|.|..+++...+-.....+ ..+ .. +..... ..+..|.++|++-+|...
T Consensus 71 ~~~-~~~~iPvV~~~~~~~~~~~~~v-~~d~~~~g~~a~~-~L~~~g~~~i~~~~~~~~ 126 (263)
T cd06280 71 LAE-LRLSFPVVLIDRAGPAGRVDAV-VLDNRAAARTLVE-HLVAQGYRRIGGLFGNAS 126 (263)
T ss_pred HHH-HhcCCCEEEECCCCCCCCCCEE-EECcHHHHHHHHH-HHHHCCCceEEEEeCCCC
Confidence 333 3568899999875432111111 111 11 222222 223247889998877543
No 121
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=66.63 E-value=8.3 Score=32.64 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=67.6
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC-CCCCCcchhhhhc-h
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR-IGPGNKMAYKLMH-G 139 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e-L~~~~~~~~~~~~-~ 139 (187)
-++.++|+-+.+..-. +++++|.. .-.+.+|||+..|..+..+.+++.+.+++.+.--.... -+..+-++..+.. .
T Consensus 43 i~l~~~D~~~~~~~a~-~~~~~l~~-~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~ 120 (343)
T PF13458_consen 43 IELVVYDDGGDPAQAV-QAARKLID-DDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQ 120 (343)
T ss_dssp EEEEEEE-TT-HHHHH-HHHHHHHH-TSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHH
T ss_pred ceeeeccCCCChHHHH-HHHHHhhh-hcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccH
Confidence 3577888888777774 56667763 57788899999999999999999999988776332221 1112222222211 2
Q ss_pred hhhhhhcccc--CCCcEEEEeeCCC-CcHHHHHHHHHHHHhc
Q 037064 140 ELVEKENWLP--KGQITIGVTAGAS-TPDKAIEGVLKKVFEI 178 (187)
Q Consensus 140 ~~~~~~~wl~--~~~~~IGITAGAS-TP~~lI~eVi~~l~~~ 178 (187)
+...-..|+. .+.++|+|..... ....+.+.+...+...
T Consensus 121 ~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~ 162 (343)
T PF13458_consen 121 QAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAA 162 (343)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhc
Confidence 2233344431 2578899887552 3344555555555543
No 122
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=66.30 E-value=6.8 Score=35.44 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhC--CCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRG--IPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g--~~t~~Ie~~~eL~ 127 (187)
...++.+++.|-+..+|.+|||||-.|-.+- +|.+.+++.+ .+...| |.-||
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigi--PkTID 132 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGL--PGTID 132 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEe--eeccc
Confidence 4568889999988899999999999988554 8888887765 455555 45554
No 123
>PTZ00287 6-phosphofructokinase; Provisional
Probab=66.18 E-value=14 Score=39.67 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
...|+++++.+-+..+|.+|||||-.|- +...|.|.+++.|.++--|-=+.-||
T Consensus 914 ~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTID 968 (1419)
T PTZ00287 914 KENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGS 968 (1419)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceee
Confidence 4578888888887789999999999887 66789998888888844444466665
No 124
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=65.79 E-value=17 Score=31.26 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=41.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCC-CCCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDS-EKRIG 127 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~ 127 (187)
+++.|+.-=+ ....+++... + .++|++||||-. ...-...|...|++.|.+.+.|+- +..++
T Consensus 156 ~Vv~FgE~~p-~~~~~~~~~~-~-~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d 219 (244)
T PRK14138 156 NIVFFGEALP-QDALREAIRL-S-SKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLD 219 (244)
T ss_pred CEEECCCcCC-HHHHHHHHHH-H-hcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCC
Confidence 5566666222 2234555555 4 379999999986 335677888999999999888876 33443
No 125
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=65.59 E-value=42 Score=30.57 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=49.6
Q ss_pred CeEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccchhc-HHH-HHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMI-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAA-QERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT-~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+-..+. .+.++++.+.|++. ...+.+|+.+. +.| .+=++++......++|++|-|||-.+=
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~----------~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEER----------NIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 588888775443 23466676666541 12345566653 111 122334444434579999999999999
Q ss_pred hhHHHHHHHHHhC
Q 037064 102 NTSSLQVIAEDRG 114 (187)
Q Consensus 102 NT~rL~eia~~~g 114 (187)
.+.|.+.++..+.
T Consensus 102 D~AK~ia~~~~~~ 114 (383)
T PRK09860 102 DCAKGIALVAANG 114 (383)
T ss_pred HHHHHHHHHHHCC
Confidence 9999988865553
No 126
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.99 E-value=73 Score=25.74 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCC-CCCCcchhhhhc-hhhhhhhccccCCCcEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI-GPGNKMAYKLMH-GELVEKENWLPKGQITIG 156 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL-~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IG 156 (187)
+.++.|..+.+|.+||++...++ ..++.+++.++|...|+....- .....+.+.... ++.. ....+..|.++|+
T Consensus 46 ~~i~~l~~~~~dgiii~~~~~~~---~~~~~~~~~~ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a-~~~l~~~g~~~i~ 121 (270)
T cd06296 46 QWVERLSARRTDGVILVTPELTS---AQRAALRRTGIPFVVVDPAGDPDADVPSVGATNWAGGLAA-TEHLLELGHRRIG 121 (270)
T ss_pred HHHHHHHHcCCCEEEEecCCCCh---HHHHHHhcCCCCEEEEecccCCCCCCCEEEeCcHHHHHHH-HHHHHHcCCCcEE
Confidence 45666766789999998764433 2355667788999999864210 000011111111 2222 2233334778899
Q ss_pred EeeCCC
Q 037064 157 VTAGAS 162 (187)
Q Consensus 157 ITAGAS 162 (187)
+-+|..
T Consensus 122 ~i~~~~ 127 (270)
T cd06296 122 FITGPP 127 (270)
T ss_pred EEcCCC
Confidence 988753
No 127
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=64.90 E-value=69 Score=27.97 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHH--HHHHH-HHHHHhhhcCCCEEEEEcCCCC
Q 037064 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA--AQERQ-DAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 24 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A--T~~RQ-~av~~La~~~~D~miVVGG~nS 100 (187)
..+|+++. ..+.-.-|..+++.++....+. | -.+. +|.. ..++| +.+..|...++|.+|+++...+
T Consensus 25 ~~~Ig~i~-~~~~~~f~~~~~~gi~~~a~~~-g-----~~l~----i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~ 93 (330)
T PRK10355 25 EVKIGMAI-DDLRLERWQKDRDIFVKKAESL-G-----AKVF----VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ 93 (330)
T ss_pred CceEEEEe-cCCCchHHHHHHHHHHHHHHHc-C-----CEEE----EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 34677766 6677778888888887643321 2 1122 3322 12333 4456676679999999874322
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
..... .+.+.+.++|...++..
T Consensus 94 ~~~~~-l~~~~~~~iPvV~id~~ 115 (330)
T PRK10355 94 VLSNV-IKEAKQEGIKVLAYDRM 115 (330)
T ss_pred hHHHH-HHHHHHCCCeEEEECCC
Confidence 23344 45566788999999774
No 128
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=64.90 E-value=15 Score=31.51 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=62.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC-CCCCCCcchhhh-h---
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK-RIGPGNKMAYKL-M--- 137 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~-eL~~~~~~~~~~-~--- 137 (187)
++.+.|+=|....-. .++.+|.. +-.+..|||...|+.+..+.+++++.++|.+...+.. .+.......+.- .
T Consensus 42 ~~~~~D~~~~~~~a~-~~a~~li~-~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~ 119 (346)
T cd06330 42 ELVVRDEAGKPDEAI-REARELVE-NEGVDMLIGLISSGVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNS 119 (346)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHh-ccCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCC
Confidence 456777766554444 44556663 3344455699999999999999999999876655433 232111111100 1
Q ss_pred -chhhhhhhccccC---CCcEEEEee-CCCCcHHHHHHHHHHHHhc
Q 037064 138 -HGELVEKENWLPK---GQITIGVTA-GASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 138 -~~~~~~~~~wl~~---~~~~IGITA-GASTP~~lI~eVi~~l~~~ 178 (187)
..+......|+.. +.++|++.. .........+.+...+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~ 165 (346)
T cd06330 120 TIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRL 165 (346)
T ss_pred hHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHh
Confidence 1122223344421 356777764 2233455666666666543
No 129
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=64.80 E-value=13 Score=32.17 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=66.2
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe-CCCCCCCCC----Ccchhhh
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI-DSEKRIGPG----NKMAYKL 136 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I-e~~~eL~~~----~~~~~~~ 136 (187)
-++.+.|+=+....-++ ++++|.. .-.+..|||+..|+.+..+.+++++.++|.+.. .+..++... ..++..+
T Consensus 48 i~l~~~D~~~~~~~a~~-~a~~li~-~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~ 125 (362)
T cd06343 48 IELIVEDDGYSPPKTVE-QTRKLVE-SDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQP 125 (362)
T ss_pred EEEEEecCCCChHHHHH-HHHHHHh-hcCeEEEEecCCcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCC
Confidence 35667788666655554 4556763 457888999999999999999999999887654 333444311 1111111
Q ss_pred hc-hhhhhhhccccC--CCcEEEEee-CCCCcHHHHHHHHHHHHh
Q 037064 137 MH-GELVEKENWLPK--GQITIGVTA-GASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 137 ~~-~~~~~~~~wl~~--~~~~IGITA-GASTP~~lI~eVi~~l~~ 177 (187)
-. .+...-..|+.. +.++|+|.. ..+-...+.+.+.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~ 170 (362)
T cd06343 126 SYQDEARIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGD 170 (362)
T ss_pred ChHHHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHHHHHHHH
Confidence 11 122223343311 456777775 333444555555555554
No 130
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=64.65 E-value=35 Score=29.15 Aligned_cols=150 Identities=15% Similarity=0.066 Sum_probs=76.4
Q ss_pred eEEEEEcCCC-ChHHHHHHHHHHHHHHhhhc--ccc-cccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 26 KVGIANQTTM-IKGETEEIGKLVEKTMMRKF--GVE-NVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 26 kv~vvsQTT~-~~~~~~~i~~~l~~~~~~~~--~~~-~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
|||++...|= ......++..-++..+.+.. |.- -..-++.+.|+-+.....++. +++|... -++..|||+.-|+
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~-~~~li~~-~~V~~iig~~~s~ 78 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAAC-ARDLVED-DKVVAVVGGSSGA 78 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHH-HHHHHHh-cCceEEEeccccc
Confidence 4676665551 12344555555554333331 100 011346788998888777654 5667643 2444556666566
Q ss_pred hhHHHHHHHHHhCCCeEEeCCCC-CCCC-CCcchhhh-hchhhhhhhcccc-CCCcEEEEeeCCC--CcHHHHHHHHHHH
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSEK-RIGP-GNKMAYKL-MHGELVEKENWLP-KGQITIGVTAGAS--TPDKAIEGVLKKV 175 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~~-eL~~-~~~~~~~~-~~~~~~~~~~wl~-~~~~~IGITAGAS--TP~~lI~eVi~~l 175 (187)
+...+ +++.+.++|...+.... .+.. .+..+... ...+...-.+|+. .+.+++++..... ......+.+.+.+
T Consensus 79 ~~~~~-~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~ 157 (341)
T cd06341 79 GGSAL-PYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARSL 157 (341)
T ss_pred chhHH-HHHhhcCCceecCCCCCchhhcCCCeEEecCCCcchhHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 65544 88888888877776543 2321 11111011 1122223334442 3567888775433 3344555556666
Q ss_pred Hhc
Q 037064 176 FEI 178 (187)
Q Consensus 176 ~~~ 178 (187)
.+.
T Consensus 158 ~~~ 160 (341)
T cd06341 158 AAA 160 (341)
T ss_pred HHc
Confidence 543
No 131
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=64.53 E-value=16 Score=31.02 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 77 RQDAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-+.+...+. ++|++||||-.-. .-..+|.+.+++.|.+...|.-.
T Consensus 168 ~~~a~~~~~--~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~ 213 (242)
T PRK00481 168 IDEAYEALE--EADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE 213 (242)
T ss_pred HHHHHHHHh--cCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC
Confidence 345555553 6899999993222 35678898888888887777654
No 132
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=64.42 E-value=13 Score=26.91 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=33.3
Q ss_pred HHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 82 YKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+.|-++++-++|+-.+-...-.+++-.+|+..++|.+.+.+-.||-
T Consensus 21 kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG 66 (82)
T PRK13602 21 KALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLG 66 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 3444456666666666555444567789999999999999888884
No 133
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=64.32 E-value=13 Score=31.97 Aligned_cols=112 Identities=15% Similarity=0.080 Sum_probs=63.7
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC-CCCCCCC--cchhhhhc-
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE-KRIGPGN--KMAYKLMH- 138 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~-~eL~~~~--~~~~~~~~- 138 (187)
++.+.|+-|....-++ ++++|.. +-.+.+|+|+..|+.+.....++++.++|.+--... ..+.... -++.-+..
T Consensus 42 ~lv~~D~~~~p~~a~~-~~~~li~-~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~ 119 (344)
T cd06348 42 KLVIEDSGGDEAEAIN-AFQTLIN-KDRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPYVFRVSAPEA 119 (344)
T ss_pred EEEEecCCCChHHHHH-HHHHHhh-hcCceEEECCCCcHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCeEEEccCcHH
Confidence 5778899988765555 4456763 334677789999998999999999998886543322 2222110 11100000
Q ss_pred ---hhhh-hhhccccCCCcEEEEeeCCC--CcHHHHHHHHHHHHh
Q 037064 139 ---GELV-EKENWLPKGQITIGVTAGAS--TPDKAIEGVLKKVFE 177 (187)
Q Consensus 139 ---~~~~-~~~~wl~~~~~~IGITAGAS--TP~~lI~eVi~~l~~ 177 (187)
.... .-..++ .+.++|++..... -...+.+.+.+.+++
T Consensus 120 ~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~g~~~~~~~~~~~~~ 163 (344)
T cd06348 120 VVAPAAIAAALKLN-PGIKRVAVFYAQDDAFSVSETEIFQKALRD 163 (344)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEEEeCCchHHHHHHHHHHHHHHH
Confidence 1111 112233 2678899776543 335566666666654
No 134
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=64.21 E-value=17 Score=35.35 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..+++.+++.|.+..+|.+|||||-.|- +..+|+|.+++.+.+.-.|-=+.-||
T Consensus 150 ~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTID 204 (555)
T PRK07085 150 EEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTID 204 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeec
Confidence 3578899988888899999999999987 66688998887743333333344444
No 135
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=64.17 E-value=15 Score=33.11 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
...|+.+++.|-+..+|.+|||||-.|-.+-+. ++ +.|.+...|
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~--L~-~~gi~vigi 123 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARR--LA-DKGLPVVGV 123 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHH--HH-hcCCCEEee
Confidence 367999999998889999999999999876643 23 356777665
No 136
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=64.05 E-value=11 Score=33.64 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=38.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.|+-|..+ .++..+....-++..|||+.+|+-+..+..+|.+.++|-.
T Consensus 43 ~~~~~d~~~~~~----~a~~~~~~~~~~V~aviGp~~S~~~~a~a~va~~~~iP~I 94 (382)
T cd06371 43 DYVLLPEPCETS----RALAAFLGYEGYASAFVGPVNPGYCEAAALLAKEWDKALF 94 (382)
T ss_pred EEEEecCCCChh----HHHHHHHcccCCceEEECCCCchHHHHHHHHHHhcCceEE
Confidence 567889999864 3333443112357788999999999999999999998754
No 137
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=63.89 E-value=14 Score=39.53 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
...++.+++.|-+..+|.+|||||-.|- +..+|+|.+++.|.+.-.|-=+.=||
T Consensus 182 ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTID 236 (1328)
T PTZ00468 182 EEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTID 236 (1328)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEc
Confidence 3467777777766689999999999987 56799999988884433344344444
No 138
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=63.77 E-value=70 Score=27.61 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=51.8
Q ss_pred HHHHhhhcCCCEEEEEcCC--CChhhHHHHHHHHHhCCCeE-EeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEE
Q 037064 80 AVYKLVEEKIDLILVVGGW--NSSNTSSLQVIAEDRGIPSY-WIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIG 156 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~--nSSNT~rL~eia~~~g~~t~-~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IG 156 (187)
.+++++....|+++|=|.. ...|+..|++..++..+|.+ +..+.+.+.+. ..-+-
T Consensus 19 ~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~----------------------aDa~l 76 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRD----------------------ADALF 76 (223)
T ss_pred HHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccCcC----------------------CCEEE
Confidence 5556665558998766654 34799999999999888865 77777777651 22222
Q ss_pred Eee--CCCCcHHHHHHHHHHHHh
Q 037064 157 VTA--GASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 157 ITA--GASTP~~lI~eVi~~l~~ 177 (187)
+-+ .+.-|+|+|..=+..+..
T Consensus 77 ~~svlNs~~~~~iig~~~~~~~~ 99 (223)
T TIGR01768 77 FPSVLNSDDPYWIIGAQIEAAPK 99 (223)
T ss_pred EEEeecCCCchHHHhHHHHHHHH
Confidence 222 567899999986666543
No 139
>PRK06683 hypothetical protein; Provisional
Probab=63.42 E-value=13 Score=27.02 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=31.6
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+++-++||-.+-...-.+.+.+.|+..++|.+.+.+-.||-
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG 66 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLG 66 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 56667766666555555566899999999999999998884
No 140
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.20 E-value=56 Score=27.65 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=48.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhc--CCCEEEEEcCCCChhh
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEE--KIDLILVVGGWNSSNT 103 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~--~~D~miVVGG~nSSNT 103 (187)
|+++.-..-.-.-|..+...++....+ .| -.+.+. .+....++|.+ ++.+... .+|.+|+.++.. ..
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~-~g-----~~v~~~--~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~--~~ 71 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADD-LG-----IELEVL--YAERDRFLMLQQARTILQRPDKPDALIFTNEKS--VA 71 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHh-cC-----CeEEEE--eCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc--ch
Confidence 454443321334466676666653322 22 112222 12334555644 5566655 799999976532 34
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
.++.+.+++.|+|...++..
T Consensus 72 ~~~~~~~~~~giPvV~~~~~ 91 (305)
T cd06324 72 PELLRLAEGAGVKLFLVNSG 91 (305)
T ss_pred HHHHHHHHhCCCeEEEEecC
Confidence 45567777889999988864
No 141
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=63.07 E-value=10 Score=33.47 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=45.7
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE-eCCCCCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW-IDSEKRIG 127 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~-Ie~~~eL~ 127 (187)
++.+.||-|....--+.+.+-+. .-.+..|||+..|+-+.....+|...++|-+- -.+..+|.
T Consensus 43 ~~~~~D~~~~~~~a~~~~~~l~~--~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls 106 (391)
T cd06372 43 EFTYTNSTCSAKESLAGFIDQVQ--KEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLD 106 (391)
T ss_pred EEEEecCCCCccHHHHHHHHHHH--hcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCcccc
Confidence 46678999988776665554443 34567899999999999999999999988542 22344553
No 142
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.76 E-value=85 Score=26.56 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=50.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhh-cccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRK-FGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT 103 (187)
||+++- ..+.-.-|..+...+.+...+. .+ -.+.++++ .....+|.. +..|....+|.+|+.+. ++...
T Consensus 1 ~Igviv-~~~~~~~~~~~~~gi~~~a~~~~~g-----~~~~~~~~--~~~~~~q~~~i~~l~~~~vdgiii~~~-~~~~~ 71 (303)
T cd01539 1 KIGVFL-YKFDDTFISLVRKNLEDIQKENGGK-----VEFTFYDA--KNNQSTQNEQIDTALAKGVDLLAVNLV-DPTAA 71 (303)
T ss_pred CeEEEe-eCCCChHHHHHHHHHHHHHHhhCCC-----eeEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhH
Confidence 355443 2344455667777676532221 11 12222322 334456655 55566679999998764 33333
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
...++.+++.|+|...++..
T Consensus 72 ~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 72 QTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHHHCCCCEEEeCCC
Confidence 45556667889999888764
No 143
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=62.60 E-value=16 Score=30.70 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=42.5
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
++.+.|+-|...... +++++|.. +-.+..|||+..|.-+..+.+++++.++|.+....
T Consensus 42 ~~~~~D~~~~~~~~~-~~~~~li~-~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 42 ELVVEDNKSDKEEAA-NAATRLID-QDKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred EEEEecCCCChHHHH-HHHHHHhc-ccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCC
Confidence 567789988877666 45567763 33445558988888899999999999988765443
No 144
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=62.49 E-value=16 Score=31.27 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=42.0
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcC-------------CCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEK-------------IDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~-------------~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++.+.||=|....-.+. +.+|.. + -.+..|||+..|+.+..+..++.+.++|..-
T Consensus 53 ~l~~~D~~~~~~~a~~~-a~~li~-~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is 120 (348)
T cd06350 53 GYHIYDSCCSPAVALRA-ALDLLL-SGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQIS 120 (348)
T ss_pred eEEEEecCCcchHHHHH-HHHHHh-cCCCCCCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceec
Confidence 56788998876554444 446653 4 5788899999999999999999998887543
No 145
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=62.48 E-value=83 Score=25.52 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=44.1
Q ss_pred HHHH-HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhh-hchhhhhhhccc-cCCC
Q 037064 76 ERQD-AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL-MHGELVEKENWL-PKGQ 152 (187)
Q Consensus 76 ~RQ~-av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~ 152 (187)
++|. .+..+..+.+|.+||.|...+.. .++-+.+.|+|...+++..+=.....+..-. ..++. --++| ..|.
T Consensus 42 ~~~~~~i~~~~~~~vdgii~~~~~~~~~---~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~--~~~~l~~~g~ 116 (268)
T cd06270 42 EKEREAIEFLLERRCDALILHSKALSDD---ELIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGYL--ATEHLIELGH 116 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCHH---HHHHHhhCCCCEEEEeccCCCCCCCeEEECcHHHHHH--HHHHHHHCCC
Confidence 4443 34455557999999998654432 2445567889999888743211111111010 01111 11222 2478
Q ss_pred cEEEEeeCCC
Q 037064 153 ITIGVTAGAS 162 (187)
Q Consensus 153 ~~IGITAGAS 162 (187)
++|++-.|..
T Consensus 117 ~~i~~i~~~~ 126 (268)
T cd06270 117 RKIACITGPL 126 (268)
T ss_pred ceEEEEeCCc
Confidence 8999887753
No 146
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=62.18 E-value=24 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=31.0
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
+|.+-|.. ++=-.|.|-..+..++.||..+|++.|++.
T Consensus 46 EaTRvLLR-RvP~~vLVr~~~~pd~~Hl~~LA~ekgVpV 83 (100)
T PF15608_consen 46 EATRVLLR-RVPWKVLVRDPDDPDLAHLLLLAEEKGVPV 83 (100)
T ss_pred HHHHHHHh-cCCCEEEECCCCCccHHHHHHHHHHcCCcE
Confidence 45566774 676777788888899999999999999875
No 147
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=62.17 E-value=22 Score=29.66 Aligned_cols=44 Identities=34% Similarity=0.360 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+...+ .++|++||||- -.-.-..+|.+.+++.|.+.+.|+-.
T Consensus 156 ~~~~~~~--~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~ 200 (224)
T cd01412 156 LEAVEAL--AKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPE 200 (224)
T ss_pred HHHHHHH--HcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCC
Confidence 3444444 37999999992 11234568888888888888777654
No 148
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=61.98 E-value=73 Score=26.40 Aligned_cols=87 Identities=7% Similarity=-0.010 Sum_probs=42.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHH--HHHHHHH-HHHhhhcCCCEEEEEcCCCChh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA--AQERQDA-VYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A--T~~RQ~a-v~~La~~~~D~miVVGG~nSSN 102 (187)
||+++...-..-.-|..+.+.+.+...+ .| -++.+...-+.. ..++|.. +..|....+|.+|+.++.. ++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~-~~ 73 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEE-LN-----IPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSL-RH 73 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHHH-cC-----CcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCch-hh
Confidence 4666654311234566676666654332 12 112221111211 2355544 3455556899999987532 23
Q ss_pred hHHHHHHHHHhCCCeEEe
Q 037064 103 TSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~I 120 (187)
...|.+ +.+.+.|...+
T Consensus 74 ~~~~~~-l~~~~~p~V~i 90 (280)
T cd06303 74 RKLIER-VLASGKTKIIL 90 (280)
T ss_pred HHHHHH-HHhCCCCeEEE
Confidence 444444 44555554445
No 149
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=61.81 E-value=23 Score=30.01 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=43.4
Q ss_pred CChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHH
Q 037064 99 NSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVF 176 (187)
Q Consensus 99 nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~ 176 (187)
++.=-.++++.|++++++.+-+++++.=+= ....++..+.-.|+|++|+-.|- +-..+.++|+
T Consensus 82 d~~ln~~i~~~a~~~~i~vNv~D~p~~~~f--------------~~Pa~~~r~~l~iaIsT~G~sP~-la~~ir~~Ie 144 (210)
T COG1648 82 DEELNERIAKAARERRILVNVVDDPELCDF--------------IFPAIVDRGPLQIAISTGGKSPV-LARLLREKIE 144 (210)
T ss_pred CHHHHHHHHHHHHHhCCceeccCCcccCce--------------ecceeeccCCeEEEEECCCCChH-HHHHHHHHHH
Confidence 345557899999999999998988885220 01256656789999999998883 3333444443
No 150
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=61.55 E-value=17 Score=34.46 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+++++++..|-+..+|.+|||||-.|--+- +|.|.++++|.+--.|-=+.=||
T Consensus 159 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTID 212 (443)
T PRK06830 159 QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTID 212 (443)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccC
Confidence 578899999988899999999999998665 78888888873322333344454
No 151
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=61.44 E-value=28 Score=27.39 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|+|... ++.++...+++|+++|.++..|.+..+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 467999998764 688888999999999999999988543
No 152
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=61.43 E-value=1e+02 Score=26.13 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..|+++... +.-.-|..+...+.+...+ .| -.+.++++-- ..+++ +.+..|....+|.+|+.+.... +.
T Consensus 61 ~~Igvi~~~-~~~~~~~~~~~~i~~~~~~-~g-----y~~~i~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 130 (327)
T TIGR02417 61 RTIGLVIPD-LENYSYARIAKELEQQCRE-AG-----YQLLIACSDD--NPDQEKVVIENLLARQVDALIVASCMPP-ED 130 (327)
T ss_pred ceEEEEeCC-CCCccHHHHHHHHHHHHHH-CC-----CEEEEEeCCC--CHHHHHHHHHHHHHcCCCEEEEeCCCCC-Ch
Confidence 468888743 3334566777777653322 22 1222222211 22333 3455565568999999875432 33
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
. .++.+.+.++|..+++...+=.....+......+.......++..|.++||+.+|..
T Consensus 131 ~-~~~~l~~~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~~ 188 (327)
T TIGR02417 131 A-YYQKLQNEGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHADEFWYLGAQP 188 (327)
T ss_pred H-HHHHHHhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEeCcc
Confidence 3 344455678999999864211110111101111111122233435788999998754
No 153
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=61.33 E-value=15 Score=32.65 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=42.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++.+.|+=.....-+ +++++|.. + ++.+|||+..|+.+..+.+++.+.+++.+.
T Consensus 68 elv~~D~~~~p~~a~-~~~~~Li~-~-~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 121 (369)
T PRK15404 68 EGVEYDDACDPKQAV-AVANKVVN-D-GIKYVIGHLCSSSTQPASDIYEDEGILMIT 121 (369)
T ss_pred EEEeecCCCCHHHHH-HHHHHHHh-C-CceEEEcCCCchhHHHhHHHHHHCCCeEEe
Confidence 567888877776555 46678884 3 677789999999999999999999987654
No 154
>PRK09701 D-allose transporter subunit; Provisional
Probab=61.24 E-value=84 Score=26.85 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=53.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..|+++.-+ +.-.-|..+.+.+.+...+ .| -.+.+.++-+..-.++|. .++.+....+|.+|+.+.....+.
T Consensus 25 ~~Igvi~~~-~~~~f~~~~~~gi~~~a~~-~g-----~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~ 97 (311)
T PRK09701 25 AEYAVVLKT-LSNPFWVDMKKGIEDEAKT-LG-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 97 (311)
T ss_pred CeEEEEeCC-CCCHHHHHHHHHHHHHHHH-cC-----CeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 368888754 3445577777777664322 22 122222222223334553 355565567999999986544444
Q ss_pred HHHHHHHHHhCCCeEEeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~ 124 (187)
..|.++ .+.|+|...+++..
T Consensus 98 ~~l~~~-~~~giPvV~~~~~~ 117 (311)
T PRK09701 98 MPVARA-WKKGIYLVNLDEKI 117 (311)
T ss_pred HHHHHH-HHCCCcEEEeCCCC
Confidence 555444 57889998888653
No 155
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=61.20 E-value=45 Score=30.15 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchhc-HHHHHH-HHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAAQER-QDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~R-Q~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+-..+... -++.+.+.|++. ..++.+|+.++ +.|.+. ++++..+...++|+||-|||=..-
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~----------~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSvi 99 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEA----------GIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPI 99 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHC----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 57888887665433 455666666531 12345566554 222222 233333333579999999999999
Q ss_pred hhHHHHHHHHHh
Q 037064 102 NTSSLQVIAEDR 113 (187)
Q Consensus 102 NT~rL~eia~~~ 113 (187)
.+-|...+....
T Consensus 100 D~aKaia~~~~~ 111 (379)
T TIGR02638 100 DTAKAIGIISNN 111 (379)
T ss_pred HHHHHHHHHHhC
Confidence 999887776444
No 156
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.14 E-value=89 Score=26.01 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=46.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccc-ccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFI-SFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
||+++.-. ..-.-|..+...+.+...+ .| -++. .++ .....+.| +.+..+....+|.+|+.+... .-.
T Consensus 1 ~i~~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~l~~~~~~~~dgiii~~~~~-~~~ 70 (294)
T cd06316 1 KAAIVMHT-SGSDWSNAQVRGAKDEFAK-LG-----IEVVATTD--AQFDPAKQVADIETTISQKPDIIISIPVDP-VST 70 (294)
T ss_pred CeEEEecC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEEcCCCc-hhh
Confidence 56666543 3333456676666553322 22 1111 111 11123333 445555556899999875322 213
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
...++.+.+.|+|...++..
T Consensus 71 ~~~i~~~~~~~iPvV~~~~~ 90 (294)
T cd06316 71 AAAYKKVAEAGIKLVFMDNV 90 (294)
T ss_pred hHHHHHHHHcCCcEEEecCC
Confidence 45556677889999888774
No 157
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=61.11 E-value=17 Score=32.67 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
...|+++++.|-+..+|.+|||||-.|-.+-+. ++ +.+.+...|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~--L~-e~~i~vigi 121 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMR--LT-EHGFPCVGL 121 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHH--HH-HcCCCEEEe
Confidence 567899999999889999999999777655532 23 236776655
No 158
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=60.53 E-value=25 Score=29.37 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.||-+ .++ .+=|++|++-+. +|.|..+.++.|+++|.++..|.+...
T Consensus 100 ~~ql~--~~~-~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 100 AKQVR--ALG-HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred HHHHH--HcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35554 456 478999988765 788999999999999999999988654
No 159
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=60.43 E-value=23 Score=27.39 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=42.1
Q ss_pred EEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCC--CCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHH
Q 037064 93 LVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI--GPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEG 170 (187)
Q Consensus 93 iVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL--~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~e 170 (187)
||+...+..--..|.+.|++.|.++|.|.++..- ++ .....||| .-.|.++|++
T Consensus 52 Vvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~Tei~p---------------------gs~Tvlai---gP~~~~~id~ 107 (115)
T TIGR00283 52 VVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHTQIPP---------------------GTITAVGI---GPDEDEKIDK 107 (115)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcceeCC---------------------CCcEEEEE---CCCCHHHHHH
Confidence 6666666666677777888889999999988654 32 22345565 5778899998
Q ss_pred HHHHH
Q 037064 171 VLKKV 175 (187)
Q Consensus 171 Vi~~l 175 (187)
+-..|
T Consensus 108 itg~L 112 (115)
T TIGR00283 108 ITGDL 112 (115)
T ss_pred HhCCC
Confidence 87654
No 160
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.36 E-value=14 Score=31.98 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=44.2
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
++.+.||=|.+..-++ ++++|.. .-++.+|+|+..|+-+.. .+++++.+++.+..-..+.
T Consensus 46 el~~~D~~~~p~~a~~-~~~~li~-~~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~~ 105 (347)
T cd06336 46 EIVSYDDKYDPAEAAA-NARRLVQ-QDGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSDL 105 (347)
T ss_pred EEEEecCCCCHHHHHH-HHHHHHh-hcCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCcc
Confidence 5668899888877764 5567773 446678889988887777 8999999887765555443
No 161
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=60.35 E-value=24 Score=27.32 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=43.8
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC--CCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK--RIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~--eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
-.-||+...+..--..|.+.+++.|.+++.|.++. |+++ .....||| .=.|++.
T Consensus 49 ~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~Tev~~---------------------gt~T~lai---gP~~~~~ 104 (115)
T cd02430 49 QKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGRTQIAP---------------------GTITVLGI---GPAPEEL 104 (115)
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccCC---------------------CCceEEEe---CCCCHHH
Confidence 35677777777777788888888999999999887 5554 22344554 3467888
Q ss_pred HHHHHHHH
Q 037064 168 IEGVLKKV 175 (187)
Q Consensus 168 I~eVi~~l 175 (187)
|+.+...|
T Consensus 105 i~~itg~L 112 (115)
T cd02430 105 IDKVTGHL 112 (115)
T ss_pred HHHhhCCC
Confidence 88776554
No 162
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=60.07 E-value=16 Score=31.31 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=43.0
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
++.+.|+=+....-.+ ++++|.. +-.+..|||+..|+.+..+.+++.+.|+|.....
T Consensus 40 ~l~~~D~~~~p~~a~~-~~~~lv~-~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~ 96 (333)
T cd06359 40 EVVVEDDGLKPDVAKQ-AAERLIK-RDKVDFVTGVVFSNVLLAVVPPVLESGTFYISTN 96 (333)
T ss_pred EEEecCCCCChHHHHH-HHHHHHh-hcCCcEEEccCCcHHHHHHHHHHHHcCCeEEecC
Confidence 5667888887766554 4567773 4456677799999999999999999998866553
No 163
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=60.07 E-value=39 Score=28.12 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
.+|++|..-+-..-| .++++.|+ .+.....+++++.=+- + -..-+..+.-.|||++|+..|- +
T Consensus 70 ~adlViaaT~d~elN-~~i~~~a~-~~~lvn~~d~~~~~~f---~-----------~Pa~~~~g~l~iaIsT~G~sP~-l 132 (202)
T PRK06718 70 DAFLVIAATNDPRVN-EQVKEDLP-ENALFNVITDAESGNV---V-----------FPSALHRGKLTISVSTDGASPK-L 132 (202)
T ss_pred CceEEEEcCCCHHHH-HHHHHHHH-hCCcEEECCCCccCeE---E-----------EeeEEEcCCeEEEEECCCCChH-H
Confidence 578766665555555 67788884 4555444444433210 0 0011224678999999888884 3
Q ss_pred HHHHHHHHHh
Q 037064 168 IEGVLKKVFE 177 (187)
Q Consensus 168 I~eVi~~l~~ 177 (187)
-..+-+.|++
T Consensus 133 a~~lr~~ie~ 142 (202)
T PRK06718 133 AKKIRDELEA 142 (202)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 164
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=59.96 E-value=13 Score=32.67 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=41.4
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
-++.+.||=|..+.-. .++++|.. +-.+.+|||+..|+.+..+..++.+.+++.
T Consensus 42 i~l~~~Dd~~~p~~a~-~~a~~Lv~-~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~ 95 (359)
T TIGR03407 42 IEPVVEDGASDWPTFA-EKARKLIT-QDKVAAVFGCWTSASRKAVLPVFEENNGLL 95 (359)
T ss_pred EEEEEeCCCCCHHHHH-HHHHHHHh-hCCCcEEEcCCcHHHHHHHHHHHhccCCce
Confidence 3567889999887776 45667773 344667789999999999999998887543
No 165
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.84 E-value=89 Score=25.02 Aligned_cols=80 Identities=25% Similarity=0.270 Sum_probs=43.3
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhh-hchhhhhhhccccCCCcEEEEe
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL-MHGELVEKENWLPKGQITIGVT 158 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~IGIT 158 (187)
.++++..+.+|.+|+.+...++ ..++.+.+.|+|...++....-.....+.... ..+.... ......|..+|++.
T Consensus 46 ~i~~~~~~~vdgiii~~~~~~~---~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~-~~l~~~g~~~i~~i 121 (266)
T cd06278 46 ALRQLLQYRVDGVIVTSGTLSS---ELAEECRRNGIPVVLINRYVDGPGVDAVCSDNYEAGRLAA-ELLLAKGCRRIAFI 121 (266)
T ss_pred HHHHHHHcCCCEEEEecCCCCH---HHHHHHhhcCCCEEEECCccCCCCCCEEEEChHHHHHHHH-HHHHHCCCceEEEE
Confidence 3445555789999998764332 34666778899998887642211101111111 1122211 11122477899999
Q ss_pred eCCCC
Q 037064 159 AGAST 163 (187)
Q Consensus 159 AGAST 163 (187)
.|-..
T Consensus 122 ~~~~~ 126 (266)
T cd06278 122 GGPAD 126 (266)
T ss_pred cCCCc
Confidence 87543
No 166
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=59.83 E-value=21 Score=31.93 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
...++.+++.|-+..+|.+|||||-.|-.+.+. |++..+.+...|
T Consensus 77 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~--L~e~~~i~vigi 121 (301)
T TIGR02482 77 EEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQK--LYEEGGIPVIGL 121 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH--HHHhhCCCEEee
Confidence 356888999998889999999999988766532 233355666554
No 167
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=59.81 E-value=18 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-.|++|||++...|-|...+..|.+.|.+.|-+...
T Consensus 155 ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~ 190 (220)
T TIGR00732 155 LSRAVLVVEAPLKSGALITARYALEQGREVFAYPGD 190 (220)
T ss_pred hcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCC
Confidence 468999999999999999999999999999998543
No 168
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.20 E-value=94 Score=25.11 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH
Q 037064 34 TMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED 112 (187)
Q Consensus 34 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~ 112 (187)
+..-.-|..+.+.+++...+ .| -++.+++ |....++| +.++.+....+|.+|+.+.. +.-+...++.+++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~-~g-----~~~~i~~--~~~~~~~~~~~~~~~~~~~vdgiii~~~~-~~~~~~~~~~~~~ 78 (267)
T cd06322 8 TQQHPFYIELANAMKEEAKK-QK-----VNLIVSI--ANQDLNKQLSDVEDFITKKVDAIVLSPVD-SKGIRAAIAKAKK 78 (267)
T ss_pred CcccHHHHHHHHHHHHHHHh-cC-----CEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCCC-hhhhHHHHHHHHH
Confidence 33445567777777653322 22 1232222 23334455 44555555789999997642 2222444566778
Q ss_pred hCCCeEEeCCC
Q 037064 113 RGIPSYWIDSE 123 (187)
Q Consensus 113 ~g~~t~~Ie~~ 123 (187)
.|+|...++..
T Consensus 79 ~~ipvV~~~~~ 89 (267)
T cd06322 79 AGIPVITVDIA 89 (267)
T ss_pred CCCCEEEEccc
Confidence 89999888764
No 169
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=59.16 E-value=21 Score=32.76 Aligned_cols=49 Identities=35% Similarity=0.474 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..|..+++.|.+...|.+|||||-.|.=+.++ +++.-+.+.+.| |.-||
T Consensus 81 e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~--Lae~~~i~vVGv--PkTID 129 (347)
T COG0205 81 EGRKVAAENLKKLGIDALVVIGGDGSYTGAAL--LAEEGGIPVVGV--PKTID 129 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCChHHHHHH--HHHhcCCcEEec--CCCcc
Confidence 35668888898889999999999998655443 454444565544 44454
No 170
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.04 E-value=54 Score=27.37 Aligned_cols=74 Identities=12% Similarity=0.189 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
.+|++|.--|-..-| .++++.|++.|++..-+++++.=+= |+ ..-+..+.-.|||++|...|- +
T Consensus 69 ~~~lVi~at~d~~ln-~~i~~~a~~~~ilvn~~d~~e~~~f-----~~---------pa~~~~g~l~iaisT~G~sP~-l 132 (205)
T TIGR01470 69 GAFLVIAATDDEELN-RRVAHAARARGVPVNVVDDPELCSF-----IF---------PSIVDRSPVVVAISSGGAAPV-L 132 (205)
T ss_pred CcEEEEECCCCHHHH-HHHHHHHHHcCCEEEECCCcccCeE-----EE---------eeEEEcCCEEEEEECCCCCcH-H
Confidence 466655443433334 6899999998876655555443220 00 012224678999999988884 3
Q ss_pred HHHHHHHHHh
Q 037064 168 IEGVLKKVFE 177 (187)
Q Consensus 168 I~eVi~~l~~ 177 (187)
...+-+.|++
T Consensus 133 a~~lr~~ie~ 142 (205)
T TIGR01470 133 ARLLRERIET 142 (205)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 171
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=58.01 E-value=14 Score=32.61 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=40.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
++.+.||=|....-+ .++++|.. + |-+.+|+|..|+.+..+..++.+.++|.....
T Consensus 42 elv~~D~~~~p~~a~-~~a~~Li~-~-~~V~~i~~~~S~~~~a~~~~~~~~~vp~i~~~ 97 (351)
T cd06334 42 EWEECDTGYEVPRGV-ECYERLKG-E-DGAVAFQGWSTGITEALIPKIAADKIPLMSGS 97 (351)
T ss_pred EEEEecCCCCcHHHH-HHHHHHhc-c-CCcEEEecCcHHHHHHhhHHHhhcCCcEEecc
Confidence 567888887655544 46778873 3 44555678899999999999999998865544
No 172
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=57.94 E-value=92 Score=24.56 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=69.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHH-HHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQER-QDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~R-Q~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++..++ +..-+..+.+.+++.... .| -++.+++. ....++ .+.++.+....+|++|+.+...++.-
T Consensus 2 i~~v~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-- 70 (264)
T cd06267 2 IGVIVPDI-SNPFFAELLRGIEEAARE-AG-----YSVLLCNS--DEDPEKEREALELLLSRRVDGIILAPSRLDDEL-- 70 (264)
T ss_pred EEEEECCC-CCHHHHHHHHHHHHHHHH-cC-----CEEEEEcC--CCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--
Confidence 67777765 556677777777654322 22 12222211 111122 23455565568999998776644322
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhh-hhhccc-cCCCcEEEEeeCCCC-c--HHHHHHHHHHHHh
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELV-EKENWL-PKGQITIGVTAGAST-P--DKAIEGVLKKVFE 177 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~-~~~~wl-~~~~~~IGITAGAST-P--~~lI~eVi~~l~~ 177 (187)
...+.+.|+|...+.+...-.. +.+-... .+.+ .--.|| ..|.++|++-.|... + ..-.+...+.+.+
T Consensus 71 -~~~~~~~~ipvv~~~~~~~~~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~ 144 (264)
T cd06267 71 -LEELAALGIPVVLVDRPLDGLG---VDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEE 144 (264)
T ss_pred -HHHHHHcCCCEEEecccccCCC---CCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHH
Confidence 5567788999888876532111 1111111 1111 112333 236789999877644 1 2233444455543
No 173
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=57.88 E-value=1.1e+02 Score=25.65 Aligned_cols=141 Identities=15% Similarity=0.210 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..|+++... ++-.-|..+.+.+.+...+ .| -++.+++ +.-..++| +.+..|....+|.+|+.+...+...
T Consensus 57 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 127 (327)
T PRK10423 57 RTIGMLITA-STNPFYSELVRGVERSCFE-RG-----YSLVLCN--TEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPS 127 (327)
T ss_pred CeEEEEeCC-CCCCcHHHHHHHHHHHHHH-cC-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhh
Confidence 358877643 3334466676666553332 22 1122221 11123444 4455666668999999987655444
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc---HHHHHHHHHHHHh
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP---DKAIEGVLKKVFE 177 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP---~~lI~eVi~~l~~ 177 (187)
..+.+ +..+.|...|+....-.....+...... +....+ ..+..|.++||+.+|...- ..-.+...++|.+
T Consensus 128 ~~~l~--~~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~-~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~ 202 (327)
T PRK10423 128 REIMQ--RYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQ-YLIDKGYTRIACITGPLDKTPARLRLEGYRAAMKR 202 (327)
T ss_pred HHHHH--hcCCCCEEEECCccCCCCCCEEEEChHHHHHHHHH-HHHHcCCCeEEEEeCCccccchHHHHHHHHHHHHH
Confidence 33322 2247899888753211110111101111 222222 2233588999998775322 2233444444543
No 174
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=57.82 E-value=97 Score=24.83 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=47.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++.-. ++-.-|..+.+.+++...+ .| -++.+.++ .-...+| +.+++|....+|++|+.+... +..
T Consensus 2 igvv~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgii~~~~~~---~~~ 69 (259)
T cd01542 2 IGVIVPR-LDSFSTSRTVKGILAALYE-NG-----YQMLLMNT--NFSIEKEIEALELLARQKVDGIILLATTI---TDE 69 (259)
T ss_pred eEEEecC-CccchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCC---CHH
Confidence 4455432 3444556677667654332 22 12222221 1122333 455667667899999997643 345
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+.+.+++.|.|...++..
T Consensus 70 ~~~~~~~~~ipvv~~~~~ 87 (259)
T cd01542 70 HREAIKKLNVPVVVVGQD 87 (259)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 556666778999988764
No 175
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=57.72 E-value=34 Score=30.09 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=37.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+++.|+.--... .-+.| .+.+ .++|++||||-.-. .=...|...+++.|.+.+.|+-.
T Consensus 177 ~VV~FGE~lp~~-~~~~a-~~~~-~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~ 235 (271)
T PTZ00409 177 NVILFGEVIPKS-LLKQA-EKEI-DKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS 235 (271)
T ss_pred cEEEeCCcCCHH-HHHHH-HHHH-HcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC
Confidence 455565543322 22334 4555 37999999997433 22357888899999998888753
No 176
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=57.61 E-value=9.2 Score=33.72 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
..|+++++.|.+..+|.+|||||-.|-.+-++. .++.+.+...|
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L--~~~~~i~vigi 122 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKL--SEEFGIPVIGI 122 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHH--HHHHHSEEEEE
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHH--HhcCceEEEEE
Confidence 456778888887899999999999998776653 44444666555
No 177
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=57.42 E-value=1.1e+02 Score=27.14 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=70.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCCh
Q 037064 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 23 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSS 101 (187)
..++|+++..++-. .-|..+.+-+++.. +..| -++.+.. --......| +.+..|....+|+++|.+ +++
T Consensus 22 ~~~~i~~v~k~~~~-pf~~~~~~Gi~~aa-~~~G-----~~v~~~~-~~~~d~~~q~~~i~~li~~~vdgIiv~~--~d~ 91 (336)
T PRK15408 22 AAERIAFIPKLVGV-GFFTSGGNGAKEAG-KELG-----VDVTYDG-PTEPSVSGQVQLINNFVNQGYNAIIVSA--VSP 91 (336)
T ss_pred CCcEEEEEECCCCC-HHHHHHHHHHHHHH-HHhC-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCH
Confidence 34589999977654 44667766666532 2222 1222111 012233455 455666667899999973 334
Q ss_pred h-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhh---h--hchhh-h-hhhccccCCCcEEEEeeCCCCc
Q 037064 102 N-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYK---L--MHGEL-V-EKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 102 N-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~---~--~~~~~-~-~~~~wl~~~~~~IGITAGASTP 164 (187)
+ .....+-+.+.|+|...+++...-+ ....+- . ..|+. . .-...+..+..+|++-.|..+.
T Consensus 92 ~al~~~l~~a~~~gIpVV~~d~~~~~~--~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~ 160 (336)
T PRK15408 92 DGLCPALKRAMQRGVKVLTWDSDTKPE--CRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTV 160 (336)
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCc--cceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCC
Confidence 4 3455566778899999998753211 111111 0 12332 1 1223342267899999886553
No 178
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=57.41 E-value=14 Score=31.80 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=64.2
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC-CCCCCCCCcchhhhhc-h
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS-EKRIGPGNKMAYKLMH-G 139 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~~~~~~~~~~~~-~ 139 (187)
-++.+.|+=|....-. +++++|.. +-++..|||+..|..+..+..++. .++|...... ...+...+..+..... .
T Consensus 41 i~l~~~D~~~~p~~a~-~~a~~Li~-~~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~~~~~~~~~~~~~~f~~~~~~~~ 117 (333)
T cd06358 41 VELVIVDDGSPPAEAA-AAAARLVD-EGGVDAIIGWHTSAVRNAVAPVVA-GRVPYVYTSLYEGGECNPGVFLTGETPEQ 117 (333)
T ss_pred EEEEEECCCCChHHHH-HHHHHHHH-hCCCcEEEecCcHHHHHHHHHHHh-cCceEEeCCCcCCCCCCCCEEEcCCCcHH
Confidence 3577889999776655 46678884 567888999999999999999998 6666544322 1222222222111111 1
Q ss_pred hhhhhhccccC--CCcEEEEeeCC-CCcHHHHHHHHHHHHh
Q 037064 140 ELVEKENWLPK--GQITIGVTAGA-STPDKAIEGVLKKVFE 177 (187)
Q Consensus 140 ~~~~~~~wl~~--~~~~IGITAGA-STP~~lI~eVi~~l~~ 177 (187)
+...-..|+.. +.++|+|...- +-...+.+.+...+++
T Consensus 118 ~~~~~~~~~~~~~g~~~v~i~~~~~~~g~~~~~~~~~~~~~ 158 (333)
T cd06358 118 QLAPAIPWLAEEKGARRWYLIGNDYVWPRGSLAAAKRYIAE 158 (333)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhHHHHHHHHHHHHH
Confidence 22233445421 46788886432 2233444444444443
No 179
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=57.14 E-value=20 Score=26.20 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=37.1
Q ss_pred hcHHHHH-HHHHHHHhhhcCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 70 ICHAAQE-RQDAVYKLVEEKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 70 IC~AT~~-RQ~av~~La~~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
..+.+.. +..-+..+ .+-|++|++. +.++..+..+++.++++|.++..|.+..+
T Consensus 36 ~~~~~~~~~~~~~~~~--~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 36 ISYEAGEFFHGPLENL--DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EEEEHHHHHTTGGGGC--STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred eccchHHHhhhhcccc--cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 4444444 44445444 3679888887 56777777888888888888888876555
No 180
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=56.70 E-value=19 Score=26.27 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=35.3
Q ss_pred hhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 84 LVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+-.+++-+|||-.+-.-.-.++|...|+..++|.+++.+-.||-
T Consensus 20 Ik~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG 63 (82)
T PRK13601 20 ITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELG 63 (82)
T ss_pred HHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHH
Confidence 33356778888777776666788899999999999999988884
No 181
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=56.31 E-value=26 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=31.6
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++.- .+|.++..+++.|+++|.+++.|.+..+
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36799999874 4777888899999999999999988644
No 182
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=56.26 E-value=15 Score=32.98 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=42.5
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
+..+|+.|...+-=+ ++.+|. .+ .+.-|+|...|+++..+..+|.+.++|-....
T Consensus 39 ~v~~dd~~d~~~a~~-~~c~Li-~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~ 93 (363)
T cd06381 39 SISFIDLNNHFDAVQ-EACDLM-NQ-GILALVTSTGCASAIALQSLTDAMHIPHLFIQ 93 (363)
T ss_pred eeEeecCCChHHHHH-HHHHHH-hc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEee
Confidence 345777777765544 445666 36 99999999999999999999999998866543
No 183
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=55.95 E-value=1.2e+02 Score=26.30 Aligned_cols=92 Identities=11% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCCh
Q 037064 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 23 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSS 101 (187)
....|+++... +.-.-|..+.+.+.+...+. + ...+.+.++ ....++|. .+..|....+|.+|+.+.....
T Consensus 23 ~~~~Igvv~~~-~~~~f~~~~~~gi~~~a~~~-g----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 94 (330)
T PRK15395 23 ADTRIGVTIYK-YDDNFMSVVRKAIEKDAKAA-P----DVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAA 94 (330)
T ss_pred CCceEEEEEec-CcchHHHHHHHHHHHHHHhc-C----CeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 34578887754 34455677777666533221 1 011111111 11334443 5555665689999998754322
Q ss_pred hhHHHHHHHHHhCCCeEEeCCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~ 123 (187)
. ....+.+++.|+|...++..
T Consensus 95 ~-~~~l~~l~~~giPvV~vd~~ 115 (330)
T PRK15395 95 A-PTVIEKARGQDVPVVFFNKE 115 (330)
T ss_pred H-HHHHHHHHHCCCcEEEEcCC
Confidence 3 33445566789999999874
No 184
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.88 E-value=1.1e+02 Score=24.69 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHHHHHhh-hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCC-CCCCcchhhh-hchhhhhhhccc-cC
Q 037064 75 QERQDAVYKLV-EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI-GPGNKMAYKL-MHGELVEKENWL-PK 150 (187)
Q Consensus 75 ~~RQ~av~~La-~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL-~~~~~~~~~~-~~~~~~~~~~wl-~~ 150 (187)
.+.++.+.++. .+++|.+|++++..+ ...++.+.+.|+|...+++..+- .....+..-. ..++... .+| ..
T Consensus 46 ~~~~~~~~~~~~~~~~dgiii~~~~~~---~~~~~~~~~~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~--~~l~~~ 120 (270)
T cd06294 46 EELLEEVKKMIQQKRVDGFILLYSRED---DPIIDYLKEEKFPFVVIGKPEDDKENITYVDNDNIQAGYDAT--EYLIKL 120 (270)
T ss_pred HHHHHHHHHHHHHcCcCEEEEecCcCC---cHHHHHHHhcCCCEEEECCCCCCCCCCCeEEECcHHHHHHHH--HHHHHc
Confidence 34455666643 346999999975332 34456667889999999875432 1100011000 1122221 222 23
Q ss_pred CCcEEEEeeCCCC
Q 037064 151 GQITIGVTAGAST 163 (187)
Q Consensus 151 ~~~~IGITAGAST 163 (187)
|..+|++.+|...
T Consensus 121 g~~~i~~i~~~~~ 133 (270)
T cd06294 121 GHKKIAFVGGDLD 133 (270)
T ss_pred CCccEEEecCCcc
Confidence 7789999887554
No 185
>PRK09526 lacI lac repressor; Reviewed
Probab=55.52 E-value=1.3e+02 Score=25.56 Aligned_cols=126 Identities=13% Similarity=0.232 Sum_probs=60.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
.||++.-. +.-.-|..+...+++...+ .| -++.++++-.+....-++.+..|....+|.+|+.+..++.....
T Consensus 65 ~Igvv~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~ 137 (342)
T PRK09526 65 TIGLATTS-LALHAPSQIAAAIKSRADQ-LG-----YSVVISMVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAEK 137 (342)
T ss_pred eEEEEeCC-CCcccHHHHHHHHHHHHHH-CC-----CEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHH
Confidence 58887654 3333455666666553222 22 12222211111112223566677667899999986544433333
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
|.. +..+.|..+++...... ...+...... +....+ ..+..|.++||+-+|..
T Consensus 138 ~~~--~~~~iPvV~~d~~~~~~-~~~V~~d~~~~~~~a~~-~L~~~G~~~I~~l~g~~ 191 (342)
T PRK09526 138 IVA--DCADVPCLFLDVSPQSP-VNSVSFDPEDGTRLGVE-HLVELGHQRIALLAGPE 191 (342)
T ss_pred HHh--hcCCCCEEEEeccCCCC-CCEEEECcHHHHHHHHH-HHHHCCCCeEEEEeCCC
Confidence 332 23478988887632211 0111111111 122211 11224788999988753
No 186
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=55.22 E-value=26 Score=29.33 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
+-.+.+..|. .+|+++|-|| ||.+|.+.-+..
T Consensus 73 ~~~~~~~~l~--~ad~I~~~GG----~~~~~~~~l~~t 104 (217)
T cd03145 73 NDPEVVARLR--DADGIFFTGG----DQLRITSALGGT 104 (217)
T ss_pred CCHHHHHHHH--hCCEEEEeCC----cHHHHHHHHcCC
Confidence 3344455554 6999999998 778887766543
No 187
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=55.16 E-value=61 Score=29.23 Aligned_cols=77 Identities=14% Similarity=0.293 Sum_probs=45.5
Q ss_pred CeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchh---c-HHHHHHHHHHHHhhhcCCCEEEEEcCCC
Q 037064 25 VKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---C-HAAQERQDAVYKLVEEKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C-~AT~~RQ~av~~La~~~~D~miVVGG~n 99 (187)
+|+.+|+-..+.. .-++.+.+.|+.. ..++.+|+.+ | ..+-+| ++..+....+|++|-|||-.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~----------~~~~~~f~~v~~~p~~~~v~~--~~~~~~~~~~D~IIavGGGS 96 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEA----------GIDYVIYDGVKPNPTITNVKD--GLAVFKKEGCDFIISIGGGS 96 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHHHH--HHHHHHhcCCCEEEEeCCcH
Confidence 4778887655443 4466676666541 1123445442 2 222222 22233234799999999999
Q ss_pred ChhhHHHHHHHHHh
Q 037064 100 SSNTSSLQVIAEDR 113 (187)
Q Consensus 100 SSNT~rL~eia~~~ 113 (187)
.-.+.|.+.+....
T Consensus 97 ~iD~aK~ia~~~~~ 110 (377)
T cd08176 97 PHDCAKAIGIVATN 110 (377)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988765443
No 188
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=55.16 E-value=18 Score=32.32 Aligned_cols=111 Identities=11% Similarity=0.026 Sum_probs=61.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC-CCCCCCC----CCcchhhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID-SEKRIGP----GNKMAYKLM 137 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie-~~~eL~~----~~~~~~~~~ 137 (187)
++...|+ +.+..- ..++++|.. -++.+|||+..|+.+..+.+++++.+++-+... +..+|.. .+.++..+.
T Consensus 36 elv~~D~-~~p~~a-~~~a~~Li~--~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~ 111 (347)
T TIGR03863 36 TLDEVAV-RTPEDL-VAALKALLA--QGVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPS 111 (347)
T ss_pred EEEEccC-CCHHHH-HHHHHHHHH--CCCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCC
Confidence 3444554 554444 455667763 357778999999999999999999887654332 2333421 122221111
Q ss_pred c-hhhhhhhcccc-CCCcEEEEeeCCCCcHHHH-HHHHHHHHh
Q 037064 138 H-GELVEKENWLP-KGQITIGVTAGASTPDKAI-EGVLKKVFE 177 (187)
Q Consensus 138 ~-~~~~~~~~wl~-~~~~~IGITAGASTP~~lI-~eVi~~l~~ 177 (187)
. .+...-..|+. .+.++|.|...-+.-..-. +.+.+.+++
T Consensus 112 ~~~~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~ 154 (347)
T TIGR03863 112 RAMLADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKR 154 (347)
T ss_pred hHhHHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHH
Confidence 1 12223334542 2567898887655444333 444444443
No 189
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=55.15 E-value=30 Score=27.89 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=43.4
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc---CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE---KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~---~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
++.+.|+-|... +=-.++.+++.. ...+..|+|+..|+.+..+..+|...++|.+-....
T Consensus 42 ~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~ 104 (298)
T cd06269 42 GYEIYDSCCSPS-DAFSAALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSAT 104 (298)
T ss_pred eeEEEecCCChH-HHHHHHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCCCcEEecccC
Confidence 455677777444 344455567742 268999999999999999999999999887655443
No 190
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=55.14 E-value=1.1e+02 Score=24.62 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=45.0
Q ss_pred HHHHHHH-hhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc--hhhhhhhccccCCCc
Q 037064 77 RQDAVYK-LVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH--GELVEKENWLPKGQI 153 (187)
Q Consensus 77 RQ~av~~-La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~--~~~~~~~~wl~~~~~ 153 (187)
++..+.+ +....+|.+|+.++.. +...+.+.+.+.+.|...++....-.....+ ..+.+ +.. .....+..|.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~~~~~~~ipvv~i~~~~~~~~~~~V-~~d~~~~g~~-a~~~l~~~g~~ 119 (270)
T cd01545 44 LAERVRALLQRSRVDGVILTPPLS--DNPELLDLLDEAGVPYVRIAPGTPDPDSPCV-RIDDRAAARE-MTRHLIDLGHR 119 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC--CccHHHHHHHhcCCCEEEEecCCCCCCCCeE-EeccHHHHHH-HHHHHHHCCCc
Confidence 5555555 4345799999997743 2456667777889999888764211110111 11111 122 11222334778
Q ss_pred EEEEeeCC
Q 037064 154 TIGVTAGA 161 (187)
Q Consensus 154 ~IGITAGA 161 (187)
+|++-+|.
T Consensus 120 ~i~~i~~~ 127 (270)
T cd01545 120 RIAFIAGP 127 (270)
T ss_pred eEEEEeCC
Confidence 99988763
No 191
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=54.99 E-value=19 Score=33.02 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=25.6
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
.++.|||+..|+-+..+..+|...++|-
T Consensus 117 ~V~aiiGp~~S~~~~ava~~~~~~~iP~ 144 (472)
T cd06374 117 PIVGVIGPGSSSVAIQVQNLLQLFNIPQ 144 (472)
T ss_pred CeEEEECCCcchHHHHHHHHhhhhcccc
Confidence 6889999999999999999999988774
No 192
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=54.73 E-value=33 Score=28.65 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=35.5
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+++.|+.-=... -+++...+. .+|++||||-.-+ .-..+|+..+.+.|.+...|+-.
T Consensus 146 ~Vv~fgE~~p~~--~~~a~~~~~--~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~ 203 (218)
T cd01407 146 DVVFFGESLPEE--LDEAAEALA--KADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLE 203 (218)
T ss_pred CeEECCCCCcHH--HHHHHHHHh--cCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCC
Confidence 455555432222 566666665 5999999993211 23467777777778787777654
No 193
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=54.69 E-value=66 Score=29.08 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=45.8
Q ss_pred CeEEEEEc-CCCC-hHHHHHHHHHHHHHHhhhcccccccccccccchhcHH-HH-HHHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQ-TTMI-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA-AQ-ERQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQ-TT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A-T~-~RQ~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+- .++. .+.++.+.+.|+.. ..++.+|+.++.. |. +=++++..+-...+|+||-|||-..
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEA----------GIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHc----------CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 57777753 3443 23355666666541 1234456666532 21 2223343333357999999999999
Q ss_pred hhhHHHHHHHH
Q 037064 101 SNTSSLQVIAE 111 (187)
Q Consensus 101 SNT~rL~eia~ 111 (187)
-.+-|.+.+..
T Consensus 99 iD~aK~ia~~~ 109 (382)
T cd08187 99 IDSAKAIAAGA 109 (382)
T ss_pred HHHHHHHHhHh
Confidence 99999877654
No 194
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=54.27 E-value=13 Score=32.03 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=14.8
Q ss_pred CEEEEEcCCCChh-hHHHHHHHHHh
Q 037064 90 DLILVVGGWNSSN-TSSLQVIAEDR 113 (187)
Q Consensus 90 D~miVVGG~nSSN-T~rL~eia~~~ 113 (187)
.++|+.||-...| |.++++.+.+.
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~ 196 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAES 196 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhcc
Confidence 3566677777766 55666655543
No 195
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=54.05 E-value=1.2e+02 Score=24.69 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGV 157 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGI 157 (187)
.....+.+.++|.+|+.+...+ . ..++.+.+.|+|...++....=.....+.....+ ++... ...+..|...|++
T Consensus 55 ~~~~~l~~~~~dgiii~~~~~~--~-~~~~~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~a-~~l~~~g~~~i~~ 130 (275)
T cd06295 55 WLARYLASGRADGVILIGQHDQ--D-PLPERLAETGLPFVVWGRPLPGQPYCYVGSDNVGGGRLAT-EHLLARGRRRIAF 130 (275)
T ss_pred HHHHHHHhCCCCEEEEeCCCCC--h-HHHHHHHhCCCCEEEECCccCCCCCCEEEECcHHHHHHHH-HHHHHCCCCeEEE
Confidence 3344444358999999986533 2 3355667889999999764221110011111111 22222 1233357889998
Q ss_pred eeCC
Q 037064 158 TAGA 161 (187)
Q Consensus 158 TAGA 161 (187)
..|-
T Consensus 131 i~~~ 134 (275)
T cd06295 131 LGGP 134 (275)
T ss_pred EcCC
Confidence 8763
No 196
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=54.00 E-value=33 Score=29.04 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred cccccchhcHHHHHHHHHHHHhhh-cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC-CCCCC----Ccchhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVE-EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK-RIGPG----NKMAYKL 136 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~-~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~-eL~~~----~~~~~~~ 136 (187)
++.+.|+-+.....+ +++++|.. ..+|+ |||+..|+.+..+.+++++.++|........ .+... ...+.-+
T Consensus 40 ~l~~~D~~~~~~~~~-~~~~~lv~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~ 116 (336)
T cd06360 40 EFVVEDDEAKPDVAV-EKARKLIEQDKVDV--VVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSF 116 (336)
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHHhCCcE--EEccCccHhHHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeC
Confidence 456778887655444 66777763 35666 6788888888899999999899887776543 33211 1111000
Q ss_pred -hchhhhhhhcccc-CCCcEEEEeeCCCC-cHHHHHHHHHHHHh
Q 037064 137 -MHGELVEKENWLP-KGQITIGVTAGAST-PDKAIEGVLKKVFE 177 (187)
Q Consensus 137 -~~~~~~~~~~wl~-~~~~~IGITAGAST-P~~lI~eVi~~l~~ 177 (187)
...+...-.+|+. .+.++|++..+.+. .....+.+...+.+
T Consensus 117 ~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~ 160 (336)
T cd06360 117 SNAQWAAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEAFTE 160 (336)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHHHH
Confidence 0111222234442 35678888875432 23334555555544
No 197
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=53.87 E-value=48 Score=24.82 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=31.7
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|+|.. -+|.++...++.|+++|.++.-|.+..+
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 35799888864 4788899999999999999988887554
No 198
>PRK03202 6-phosphofructokinase; Provisional
Probab=53.79 E-value=25 Score=31.72 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEe
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWI 120 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~I 120 (187)
...++.+++.|-+...|.+|+|||-.|-.+- +|.| .+.+...|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e----~~i~vigi 122 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE----HGIPVIGL 122 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh----cCCcEEEe
Confidence 4689999999988899999999999887654 4443 46666655
No 199
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=53.54 E-value=64 Score=27.64 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=40.2
Q ss_pred hhcHHHHHHHHHHHHhhhcCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCCC
Q 037064 69 TICHAAQERQDAVYKLVEEKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 69 TIC~AT~~RQ~av~~La~~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
..|+.-..-+.....+. .+=|++|++.. .++.++..+++.|+++|.++..|.+-.+=
T Consensus 169 ~~~~~d~~~~~~~~~~~-~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 169 CQAYDDAHIMLMSAALL-QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred EEEcCCHHHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34443333344344455 47898888865 46788999999999999999999886543
No 200
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=53.38 E-value=28 Score=29.30 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=42.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
++.+.|+=+.....+ +++++|... .||+ |||+..|+.+..+.+.+++.++|.......
T Consensus 40 ~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 98 (333)
T cd06332 40 EVVVEDDELKPDVAV-QAARKLIEQDKVDV--VVGPVFSNVALAVVPSLTESGTFLISPNAG 98 (333)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHHHcCCcE--EEcCCccHHHHHHHHHHhhcCCeEEecCCC
Confidence 567788888766555 466677643 5665 568888888888999999999987776543
No 201
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=53.07 E-value=90 Score=28.22 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=47.5
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchhcH-HHHHHH-HHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTICH-AAQERQ-DAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-AT~~RQ-~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+...+... .++.+.+.|++. ..++.+|+.+|. .+.+.= +++..+-...+|++|-|||=.+-
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsvi 98 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEA----------GLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPI 98 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 58888887654332 355666666531 123445665652 222211 12323323479999999999999
Q ss_pred hhHHHHHHHHHh
Q 037064 102 NTSSLQVIAEDR 113 (187)
Q Consensus 102 NT~rL~eia~~~ 113 (187)
.+.|.+-+....
T Consensus 99 D~AK~ia~~~~~ 110 (377)
T cd08188 99 DCAKGIGIVASN 110 (377)
T ss_pred HHHHHHHHHHHC
Confidence 999988776543
No 202
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=52.93 E-value=1.2e+02 Score=24.33 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=47.7
Q ss_pred HHHHHHHh-hhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcE
Q 037064 77 RQDAVYKL-VEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQIT 154 (187)
Q Consensus 77 RQ~av~~L-a~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~ 154 (187)
..+.+.++ ..+.+|.+|+.+.. .|...+ +.+.+.+.|...++....-.....+.....+ +..... ..+..|.++
T Consensus 47 ~~~~~~~~~~~~~vdgiii~~~~--~~~~~~-~~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~-~l~~~g~~~ 122 (268)
T cd06271 47 PLEVYRRLVESGLVDGVIISRTR--PDDPRV-ALLLERGFPFVTHGRTELGDPHPWVDFDNEAAAYQAVR-RLIALGHRR 122 (268)
T ss_pred HHHHHHHHHHcCCCCEEEEecCC--CCChHH-HHHHhcCCCEEEECCcCCCCCCCeEeeCcHHHHHHHHH-HHHHcCCCc
Confidence 33455555 33469999998764 233444 4455788998888654221111111111111 222211 123347889
Q ss_pred EEEeeCC--CCc-HHHHHHHHHHHHh
Q 037064 155 IGVTAGA--STP-DKAIEGVLKKVFE 177 (187)
Q Consensus 155 IGITAGA--STP-~~lI~eVi~~l~~ 177 (187)
|++-+|. +.. ..-.+...+.+.+
T Consensus 123 i~~i~~~~~~~~~~~R~~gf~~~~~~ 148 (268)
T cd06271 123 IALLNPPEDLTFAQHRRAGYRRALAE 148 (268)
T ss_pred EEEecCccccchHHHHHHHHHHHHHH
Confidence 9987653 111 1234445555544
No 203
>PRK13937 phosphoheptose isomerase; Provisional
Probab=52.92 E-value=45 Score=27.17 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|+|.. -++.++...++.|+++|.+++.|.+..+
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36799999973 4788889999999999999999987543
No 204
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=52.90 E-value=34 Score=27.25 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCC---eEEeCCCC--CCCCCCcchhhhhchhhhhhhccccCCCcEE
Q 037064 81 VYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIP---SYWIDSEK--RIGPGNKMAYKLMHGELVEKENWLPKGQITI 155 (187)
Q Consensus 81 v~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~---t~~Ie~~~--eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~I 155 (187)
+..+. +..++-...+.. =.+..-+..++++.|.+ +++|.+-- |+... .. .|..+|
T Consensus 74 ~~~~~-~~~gl~~~~~~~-KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA----------------~~--aGi~~i 133 (170)
T TIGR01668 74 AKAVE-KALGIPVLPHAV-KPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG----------------NR--NGSYTI 133 (170)
T ss_pred HHHHH-HHcCCEEEcCCC-CCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH----------------HH--cCCeEE
Confidence 34444 356665554432 23556677777777753 88898763 66431 11 378899
Q ss_pred EEeeCCCCcHHHHHHHHHHHHhc
Q 037064 156 GVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 156 GITAGASTP~~lI~eVi~~l~~~ 178 (187)
+|+.|..+.+++...++.+++.+
T Consensus 134 ~v~~g~~~~~~~~~~~~~~~~~~ 156 (170)
T TIGR01668 134 LVEPLVHPDQWFIKRIWRRVERT 156 (170)
T ss_pred EEccCcCCccccchhhHHHHHHH
Confidence 99999999998887777776653
No 205
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=52.83 E-value=58 Score=29.49 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=48.0
Q ss_pred CeEEEEEcCC-CC-hHHHHHHHHHHHHHHhhhcccccccccccccchhcH-HH-HHHHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTT-MI-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICH-AA-QERQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT-~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-AT-~~RQ~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+-.. +. ...++.+.+.|++. ..++.+|+.++. .| .+=++.+..+....+|++|-|||=..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~----------gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEH----------GIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 5778887433 32 33456777777541 123455665541 11 22333444444457999999999999
Q ss_pred hhhHHHHHHHHH
Q 037064 101 SNTSSLQVIAED 112 (187)
Q Consensus 101 SNT~rL~eia~~ 112 (187)
-.+-|.+-+...
T Consensus 97 iD~aK~ia~~~~ 108 (383)
T cd08186 97 IDSAKSAAILLE 108 (383)
T ss_pred HHHHHHHHHHHh
Confidence 999999877643
No 206
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=52.60 E-value=34 Score=21.49 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.7
Q ss_pred cCCCEEEEEcCCCChhhH
Q 037064 87 EKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~ 104 (187)
...|++|+.||.+..-..
T Consensus 45 ~~~~~lii~g~~~~~~~~ 62 (92)
T cd03128 45 DDYDGLILPGGPGTPDDL 62 (92)
T ss_pred ccCCEEEECCCCcchhhh
Confidence 479999999998887553
No 207
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=52.56 E-value=72 Score=28.59 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhh-hc---CCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV-EE---KIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La-~~---~~D~miVVGG~nS 100 (187)
+++.+|+-.++...-.+.+.+.|+. . +.. ...+.+.+.-|+.|.+.=+.+.+.+ +. +.|++|.|||=..
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~----~-gi~--~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEA----A-GFE--VDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh----c-CCc--eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 5788888877754444445444533 1 100 0111122334444444333333333 22 2499999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-.+.+.+.....+|+|-..|-+-
T Consensus 105 ~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 105 GDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHHHHHHHHhcCCCCEEEcCch
Confidence 99999887666678888888774
No 208
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=52.33 E-value=1.4e+02 Score=24.90 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=49.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++... ++-.-|..+...+.+...+ .| -++.+.++-... ++| +.++.+....+|.+|+++...++ ...
T Consensus 2 I~vi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~--~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~ 71 (288)
T cd01538 2 IGLSLPT-KTEERWIRDRPNFEAALKE-LG-----AEVIVQNANGDP--AKQISQIENMIAKGVDVLVIAPVDGEA-LAS 71 (288)
T ss_pred eEEEEeC-CCcHHHHHHHHHHHHHHHH-cC-----CEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEecCChhh-HHH
Confidence 5555532 4555677777777654333 22 233444443222 333 44545555789999998743332 234
Q ss_pred HHHHHHHhCCCeEEeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~ 123 (187)
+++.+++.|+|...++..
T Consensus 72 ~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 72 AVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 555666788999888764
No 209
>PRK13936 phosphoheptose isomerase; Provisional
Probab=52.16 E-value=42 Score=27.63 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 87 EKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 87 ~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+-|++|+|... +|.++..+++.|+++|.++..|.+..
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 468999999764 78889999999999999999998864
No 210
>PRK05569 flavodoxin; Provisional
Probab=52.12 E-value=69 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=15.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHH
Q 037064 91 LILVVGGWNSSNTSSLQVIAED 112 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~ 112 (187)
++||-++ .+.||.++++...+
T Consensus 4 i~iiY~S-~tGnT~~iA~~i~~ 24 (141)
T PRK05569 4 VSIIYWS-CGGNVEVLANTIAD 24 (141)
T ss_pred EEEEEEC-CCCHHHHHHHHHHH
Confidence 4566666 59999999987655
No 211
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=52.01 E-value=1.5e+02 Score=25.19 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..|+++.- .++-.-|..+.+.+.+...+ .| -++.+.++ .+ ..+.| +.+..+....+|.+|+++...+
T Consensus 64 ~~Igvi~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~-~~-~~~~~~~~~~~~~~~~vdgiI~~~~~~~--- 131 (331)
T PRK14987 64 RAIGVLLP-SLTNQVFAEVLRGIESVTDA-HG-----YQTMLAHY-GY-KPEMEQERLESMLSWNIDGLILTERTHT--- 131 (331)
T ss_pred CEEEEEeC-CCcchhHHHHHHHHHHHHHH-CC-----CEEEEecC-CC-CHHHHHHHHHHHHhcCCCEEEEcCCCCC---
Confidence 35777764 34445577777777654322 22 12222211 11 12222 3455565568999999864322
Q ss_pred HHHHHHHHHhCCCeEEeCC-C-CCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDS-E-KRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~-~-~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
....+.+.+.|.|...+.+ . ...+ ..+..-... +.... +..+..|.++||+-+|.+
T Consensus 132 ~~~~~~l~~~~iPvV~~~~~~~~~~~--~~V~~Dn~~~~~~a~-~~L~~~Gh~~I~~i~~~~ 190 (331)
T PRK14987 132 PRTLKMIEVAGIPVVELMDSQSPCLD--IAVGFDNFEAARQMT-TAIIARGHRHIAYLGARL 190 (331)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCC--ceEEeCcHHHHHHHH-HHHHHCCCceEEEEcCCC
Confidence 3444555678899887633 2 1111 011111111 22222 122224788999986654
No 212
>PRK13938 phosphoheptose isomerase; Provisional
Probab=51.85 E-value=42 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHHHHHHhhhcCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 77 RQDAVYKLVEEKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
||-+ ..+ .+=|++|++-. -+|.|+..+++.|+++|.++..|.+..+
T Consensus 105 ~~~~--~~~-~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 105 RALE--GSA-RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred HHHH--hcC-CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4444 455 47899998866 4789999999999999999999987554
No 213
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=51.56 E-value=1.5e+02 Score=25.04 Aligned_cols=125 Identities=11% Similarity=0.148 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..|+++.-. +.-.-|..+...+.+...+ .| -.+.++++ .--.++| +.+..|....+|.+|+.+.... +.
T Consensus 62 ~~Igvv~~~-~~~~~~~~l~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 131 (328)
T PRK11303 62 RSIGLIIPD-LENTSYARIAKYLERQARQ-RG-----YQLLIACS--DDQPDNEMRCAEHLLQRQVDALIVSTSLPP-EH 131 (328)
T ss_pred ceEEEEeCC-CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC-Ch
Confidence 358877643 3344567777777654332 22 12222211 1112333 3455565568999999875332 23
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhh-hchhhhhhhccccCCCcEEEEeeCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL-MHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
. +++...+.|.|..+|+...+-.....+..-. ..+....+ ..+..|.++||+.+|-
T Consensus 132 ~-~~~~l~~~~iPvV~v~~~~~~~~~~~V~~d~~~~~~~a~~-~L~~~G~r~I~~i~~~ 188 (328)
T PRK11303 132 P-FYQRLQNDGLPIIALDRALDREHFTSVVSDDQDDAEMLAE-SLLKFPAESILLLGAL 188 (328)
T ss_pred H-HHHHHHhcCCCEEEECCCCCCCCCCEEEeCCHHHHHHHHH-HHHHCCCCeEEEEeCc
Confidence 3 3344456789999998753211111111000 11122222 2222478999998764
No 214
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=51.46 E-value=29 Score=25.38 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
.+|.+.........+-+||+.||..-+ ..+.++|++.|+|.+..
T Consensus 48 gdR~di~~~a~~~~i~~iIltg~~~~~--~~v~~la~~~~i~vi~t 91 (105)
T PF07085_consen 48 GDREDIQLAAIEAGIACIILTGGLEPS--EEVLELAKELGIPVIST 91 (105)
T ss_dssp TT-HHHHHHHCCTTECEEEEETT------HHHHHHHHHHT-EEEE-
T ss_pred CCcHHHHHHHHHhCCCEEEEeCCCCCC--HHHHHHHHHCCCEEEEE
Confidence 467776666555568899999987765 46678888888776544
No 215
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=51.17 E-value=61 Score=30.85 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.++++.+..|.+..+|.+|+|||-.|-.+. +|++-++++|.+-=.|-=+.=||
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTID 216 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTID 216 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccC
Confidence 589999999988899999999999998765 78888888884433344455665
No 216
>PRK01215 competence damage-inducible protein A; Provisional
Probab=51.01 E-value=30 Score=30.26 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=41.0
Q ss_pred ChhhHHHHHHHHHhCCCeEEeCC-CCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-CcHHHHHHHHHHHHh
Q 037064 100 SSNTSSLQVIAEDRGIPSYWIDS-EKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS-TPDKAIEGVLKKVFE 177 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie~-~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS-TP~~lI~eVi~~l~~ 177 (187)
=+|+.-|.+.+.+.|....++.. .++.+. |. ..-..|+ ..+..|=+|+|.| ||++++.+++..+..
T Consensus 22 dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~---I~--------~~l~~a~-~~~DlVIttGG~g~t~dD~t~eaia~~~g 89 (264)
T PRK01215 22 NTNASWIARRLTYLGYTVRRITVVMDDIEE---IV--------SAFREAI-DRADVVVSTGGLGPTYDDKTNEGFAKALG 89 (264)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCCCHHH---HH--------HHHHHHh-cCCCEEEEeCCCcCChhhhHHHHHHHHhC
Confidence 35999999999999987554432 222221 00 1122456 4566666665544 788999999888743
No 217
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=50.84 E-value=93 Score=25.31 Aligned_cols=85 Identities=18% Similarity=0.279 Sum_probs=49.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHH--HHHHH-HHHHHhhhcCCCEEEEEcCCCC---
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA--AQERQ-DAVYKLVEEKIDLILVVGGWNS--- 100 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A--T~~RQ-~av~~La~~~~D~miVVGG~nS--- 100 (187)
||++..+ +.-.-|..+.+.+.+...+. | +.+ .+|+. -.++| ++++.|....+|.+|+.++...
T Consensus 2 igvv~~~-~~~~~~~~~~~gi~~~~~~~-g-------~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~ 70 (273)
T cd01541 2 IGVITTY-ISDYIFPSIIRGIESVLSEK-G-------YSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN 70 (273)
T ss_pred eEEEeCC-ccchhHHHHHHHHHHHHHHc-C-------CEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence 5666643 44555677777776543332 2 111 12322 22333 4566677789999999876432
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+...+.+ +.+.|+|...++..
T Consensus 71 ~~~~~~~~-~~~~~ipvV~~~~~ 92 (273)
T cd01541 71 PNIDLYLK-LEKLGIPYVFINAS 92 (273)
T ss_pred ccHHHHHH-HHHCCCCEEEEecC
Confidence 23344444 56788999999764
No 218
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=50.66 E-value=1.7e+02 Score=25.49 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=57.8
Q ss_pred HHhhccCCCCCCCCCC---CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHh
Q 037064 9 KFKKSVSKGFDPDIDL---VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKL 84 (187)
Q Consensus 9 ~~~~~~s~~~~~~~~~---~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~L 84 (187)
+++.....||.|...- .+|+++.-+ +.-.-|..+.+-+.+...+ .| -++.++++-=+...++| +.+..+
T Consensus 28 ~~~~~~~LgY~Pn~~Ar~t~~Igvv~p~-~~~~f~~~~~~gi~~aa~~-~G-----~~l~i~~~~~~~~~~~q~~~i~~l 100 (343)
T PRK10936 28 HLAQRTSLQYSPLLKAKKAWKLCALYPH-LKDSYWLSVNYGMVEEAKR-LG-----VDLKVLEAGGYYNLAKQQQQLEQC 100 (343)
T ss_pred HHHhhcccccccccccCCCeEEEEEecC-CCchHHHHHHHHHHHHHHH-hC-----CEEEEEcCCCCCCHHHHHHHHHHH
Confidence 4566677788875433 479988765 3445677777777653222 22 12222221001123444 445556
Q ss_pred hhcCCCEEEEEcCCCChhh--HHHHHHHHHhCCCeEEeCC
Q 037064 85 VEEKIDLILVVGGWNSSNT--SSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 85 a~~~~D~miVVGG~nSSNT--~rL~eia~~~g~~t~~Ie~ 122 (187)
....+|.+|+++.. .+. ..| .+++.|+|...+.+
T Consensus 101 ~~~~vdgIIl~~~~--~~~~~~~l--~~~~~giPvV~~~~ 136 (343)
T PRK10936 101 VAWGADAILLGAVT--PDGLNPDL--ELQAANIPVIALVN 136 (343)
T ss_pred HHhCCCEEEEeCCC--hHHhHHHH--HHHHCCCCEEEecC
Confidence 55789999998643 232 344 45577889886643
No 219
>PTZ00287 6-phosphofructokinase; Provisional
Probab=50.66 E-value=24 Score=38.12 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+++.+++.|.+...|.+|||||-.|- +..+|++.+++.|.+.-.|-=+.=||
T Consensus 258 e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTID 311 (1419)
T PTZ00287 258 DDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTID 311 (1419)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeec
Confidence 467778888877789999999999987 56688998888888765555566665
No 220
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.32 E-value=37 Score=22.98 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=26.8
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
.+=|++|++.- .+|..+..+++.++++|.+++-|.
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 36798888863 457788899999988887766554
No 221
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=50.31 E-value=51 Score=27.76 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=60.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC-CCCc-chhhhhc--
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG-PGNK-MAYKLMH-- 138 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~-~~~~-~~~~~~~-- 138 (187)
++.+.|+-|..... .+++++|.. +-.+..|||...|+++..+.+++.+.++|...+....... .... +-+....
T Consensus 41 ~l~~~d~~~~~~~a-~~~~~~li~-~~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (312)
T cd06333 41 ELIVLDDGSDPTKA-VTNARKLIE-EDKVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAAIVEPKRKWVFKTPQNDR 118 (312)
T ss_pred EEEEecCCCCHHHH-HHHHHHHHh-hCCeEEEECCCCCHHHHHHHHHHHhcCCCEEEccCCccccCCCCCcEEEcCCCcH
Confidence 45677777765433 345666763 2234445677778888888899989999988877644321 1110 1000011
Q ss_pred hhhhhhhcccc-CCCcEEEEeeCCCCc-HHHHHHHHHHHH
Q 037064 139 GELVEKENWLP-KGQITIGVTAGASTP-DKAIEGVLKKVF 176 (187)
Q Consensus 139 ~~~~~~~~wl~-~~~~~IGITAGASTP-~~lI~eVi~~l~ 176 (187)
.....-.+|+. .+.++|++..+.+.. ....+.+.+.+.
T Consensus 119 ~~~~~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~~~~~ 158 (312)
T cd06333 119 LMAEAILADMKKRGVKTVAFIGFSDAYGESGLKELKALAP 158 (312)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHH
Confidence 11112223331 378899999765421 233344444444
No 222
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=50.03 E-value=67 Score=29.10 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchhc-HHH-HHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAA-QERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT-~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|.-..+... -++.+.+.|++. ..++.+|+.++ +.| ..=.+++..+-...+|+||=|||-.+-
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAA----------GLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHC----------CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 57888876544332 456666666541 12344555554 222 222334444433479999999999999
Q ss_pred hhHHHHHHHHH
Q 037064 102 NTSSLQVIAED 112 (187)
Q Consensus 102 NT~rL~eia~~ 112 (187)
.+.|.+-++..
T Consensus 101 D~aK~ia~~~~ 111 (382)
T PRK10624 101 DTCKAIGIISN 111 (382)
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 223
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=50.02 E-value=39 Score=29.11 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
+.+.+.+ .++|++||||-.-. .=...|...|++.|.+...|.-..
T Consensus 164 ~~~~~~~-~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 164 DEIESVM-SKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred HHHHHHH-HhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 3455556 47999999997533 234678889999999988887654
No 224
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=49.79 E-value=23 Score=31.07 Aligned_cols=46 Identities=11% Similarity=0.292 Sum_probs=33.8
Q ss_pred hcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 70 ICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 70 IC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
.|... +=.+++.+|.. + .++.|||...|+.+..+..+|.+.++|-.
T Consensus 45 ~~d~~-~~~~~~c~ll~-~-~V~aiiGp~~s~~~~~~~~~~~~~~iP~i 90 (382)
T cd06380 45 TSDSF-ALTNAICSQLS-R-GVFAIFGSYDKSSVNTLTSYSDALHVPFI 90 (382)
T ss_pred ccchH-HHHHHHHHHHh-c-CcEEEEecCcHHHHHHHHHHHhcCCCCeE
Confidence 34444 34455666663 3 68889999999999999999999888754
No 225
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=49.66 E-value=1.1e+02 Score=27.06 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchhcH-HHHH-HHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTICH-AAQE-RQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-AT~~-RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|........ -++.+.+.|++. .++.+|+.+|. .|.+ =++++..+.+..+|+||-|||-..-
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-----------~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-----------IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-----------CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 57788876544332 455666666431 12445666652 2222 1233434434579999999999999
Q ss_pred hhHHHHHHHHH-----hCCCeEEeCCC
Q 037064 102 NTSSLQVIAED-----RGIPSYWIDSE 123 (187)
Q Consensus 102 NT~rL~eia~~-----~g~~t~~Ie~~ 123 (187)
.+.|.+.+... .++|-..|-+-
T Consensus 92 D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 92 DAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 99987655432 23566666543
No 226
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=49.64 E-value=21 Score=32.19 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 89 IDLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 89 ~D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
-.++.|||+..|+-+..+..+|...++|-
T Consensus 102 ~~v~aviG~~~S~~~~av~~~~~~~~ip~ 130 (452)
T cd06362 102 KPVAGVIGASYSSVSIQVANLLRLFKIPQ 130 (452)
T ss_pred CCeEEEECCCCCchHHHHHHHhccccCcc
Confidence 46889999999999999999999988774
No 227
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=49.49 E-value=38 Score=28.62 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 71 CHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 71 C~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
|....-. .++.+|.. -.+..|||+..|+.+..+..+|.+.++|-+-.
T Consensus 46 ~~~~~a~-~~a~~li~--~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~ 92 (324)
T cd06368 46 NDSFELT-NKACDLLS--QGVAAIFGPSSSSSANTVQSICDALEIPHITT 92 (324)
T ss_pred CChHHHH-HHHHHHHh--cCcEEEECCCCHHHHHHHHHHHhccCCCcEEe
Confidence 5554443 45556763 36778899999999999999999999886544
No 228
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=49.25 E-value=17 Score=26.03 Aligned_cols=44 Identities=20% Similarity=0.483 Sum_probs=35.5
Q ss_pred hhhcCCCEEEEEcCCCChhhHH-HHHHHHHhCCCeEEeCCCCCCC
Q 037064 84 LVEEKIDLILVVGGWNSSNTSS-LQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~~Ie~~~eL~ 127 (187)
|-.+++-++|+-.+-+.-.-.+ |-.+|+++++|.+++.+..+|-
T Consensus 27 l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG 71 (95)
T PF01248_consen 27 LKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELG 71 (95)
T ss_dssp HHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHH
T ss_pred HHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHH
Confidence 3335677888888877777767 8889999999999999988885
No 229
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.68 E-value=1.5e+02 Score=24.40 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEe
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVT 158 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGIT 158 (187)
....+....+|.+|+.+...+ ....+.+++.|+|..+++...+ .....+...... ++...+.- +..|.++||+.
T Consensus 48 ~~~~~~~~~~dgiii~~~~~~---~~~~~~~~~~~ipvV~~~~~~~-~~~~~v~~d~~~~g~~~~~~L-~~~g~~~i~~i 122 (283)
T cd06279 48 DSALVVSALVDGFIVYGVPRD---DPLVAALLRRGLPVVVVDQPLP-PGVPSVGIDDRAAAREAARHL-LDLGHRRIGIL 122 (283)
T ss_pred HHHHHHhcCCCEEEEeCCCCC---hHHHHHHHHcCCCEEEEecCCC-CCCCEEeeCcHHHHHHHHHHH-HHcCCCcEEEe
Confidence 444455578999999876433 2345566788999999987654 221111111111 22222222 22478899998
Q ss_pred eCCC
Q 037064 159 AGAS 162 (187)
Q Consensus 159 AGAS 162 (187)
++-.
T Consensus 123 ~~~~ 126 (283)
T cd06279 123 GLRL 126 (283)
T ss_pred cCcc
Confidence 7643
No 230
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=48.45 E-value=62 Score=28.51 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 76 ERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+=.+.++++. ..+|.++|+ ||.-|.=+..+++++++.+..++-|=.
T Consensus 73 ~~~~~I~~~l-~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt 122 (304)
T cd02201 73 ESREEIKEAL-EGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVT 122 (304)
T ss_pred HHHHHHHHHH-hCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEe
Confidence 3445677887 479999998 567777788899999999987766654
No 231
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.39 E-value=1.4e+02 Score=23.87 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=64.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.++ ++-.-|..+...+++...+ .| -.+.++++- + ....|.. +..+....+|.+|+.++... +.
T Consensus 2 i~~v~~~-~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~-~-~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~-- 69 (267)
T cd06284 2 ILVLVPD-IANPFFSEILKGIEDEARE-AG-----YGVLLGDTR-S-DPEREQEYLDLLRRKQADGIILLDGSLP-PT-- 69 (267)
T ss_pred EEEEECC-CCCccHHHHHHHHHHHHHH-cC-----CeEEEecCC-C-ChHHHHHHHHHHHHcCCCEEEEecCCCC-HH--
Confidence 5566654 4556677777777663332 22 122222221 1 1233433 44455457999999876422 22
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhh-chhhhhhhccccCCCcEEEEeeCCCC---cHHHHHHHHHHHHh
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLM-HGELVEKENWLPKGQITIGVTAGAST---PDKAIEGVLKKVFE 177 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~-~~~~~~~~~wl~~~~~~IGITAGAST---P~~lI~eVi~~l~~ 177 (187)
+.+.. ..|.|...+.+..+-.....+..... .+..... ..+..|..+|++-.|... ...-.+...+.+.+
T Consensus 70 ~~~~~-~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~-~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~ 143 (267)
T cd06284 70 ALTAL-AKLPPIVQACEYIPGLAVPSVSIDNVAAARLAVD-HLISLGHRRIALITGPRDNPLARDRLEGYRQALAE 143 (267)
T ss_pred HHHHH-hcCCCEEEEecccCCCCcceEEecccHHHHHHHH-HHHHcCCceEEEEcCCccchhHHHHHHHHHHHHHH
Confidence 32333 45889888865322111111111111 1222221 122347788998776422 22334444445543
No 232
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=48.10 E-value=35 Score=25.44 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=32.6
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+-|++|++.- -++..+...++.|+++|.++.-|.+.++|.
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~ 83 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGKLL 83 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 46799988875 367778888999999999999998766553
No 233
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=48.08 E-value=53 Score=29.29 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=45.2
Q ss_pred eEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccc---hhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 26 KVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFN---TICHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 26 kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~n---TIC~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
|+.+|+-..+... -++.+.+.|++. ..++..|+ .-|....-+ +++..+.+..+|++|-|||-..-
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~~----------~i~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~D~IIaiGGGS~~ 91 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEEA----------GIEVQVFDGVGPNPTLEDVD-EAAEQARKFGADCIIAIGGGSVM 91 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHHT----------TCEEEEEEEESSS-BHHHHH-HHHHHHHHTTSSEEEEEESHHHH
T ss_pred CEEEEECchHHhCccHHHHHHHHhhC----------ceEEEEEecCCCCCcHHHHH-HHHHHHHhcCCCEEEEcCCCCcC
Confidence 6777765533333 355555555431 12233333 222222222 44444444589999999999999
Q ss_pred hhHHHHHHHHHh
Q 037064 102 NTSSLQVIAEDR 113 (187)
Q Consensus 102 NT~rL~eia~~~ 113 (187)
.+-|.+.++...
T Consensus 92 D~aK~va~~~~~ 103 (366)
T PF00465_consen 92 DAAKAVALLLAN 103 (366)
T ss_dssp HHHHHHHHHHTS
T ss_pred cHHHHHHhhccC
Confidence 999999888765
No 234
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=47.90 E-value=70 Score=25.30 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=17.2
Q ss_pred CCCEEEEEcCCCChhh-HHHHHHHHHhCCCeEEeCC
Q 037064 88 KIDLILVVGGWNSSNT-SSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~~Ie~ 122 (187)
+..-++++|.-.|.-. ..+..--...|.+++.+.+
T Consensus 29 ~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~ 64 (179)
T TIGR03127 29 KAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGE 64 (179)
T ss_pred hCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 3566777765444322 2233323335666666644
No 235
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.87 E-value=1.5e+02 Score=24.02 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC-CCCCCCcchhhhhchhhhhhhccccCCCcEEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK-RIGPGNKMAYKLMHGELVEKENWLPKGQITIGV 157 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~-eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGI 157 (187)
+.++.+....+|.+|+.+... |...+.++. +.+.|..+|+... +.. ...+...............+..|.++||+
T Consensus 46 ~~i~~~~~~~~dgiii~~~~~--~~~~~~~~~-~~~~pvV~i~~~~~~~~-~~~V~~d~~~~~~~~~~~L~~~G~~~i~~ 121 (269)
T cd06293 46 TYLRWLDTNHVDGLIFVTNRP--DDGALAKLI-NSYGNIVLVDEDVPGAK-VPKVFCDNEQGGRLATRHLARAGHRRIAF 121 (269)
T ss_pred HHHHHHHHCCCCEEEEeCCCC--CHHHHHHHH-hcCCCEEEECCCCCCCC-CCEEEECCHHHHHHHHHHHHHCCCceEEE
Confidence 344555556899999997442 234455544 4578999998642 211 11121111111111222334358899998
Q ss_pred eeCCCCc-H--HHHHHHHHHHHh
Q 037064 158 TAGASTP-D--KAIEGVLKKVFE 177 (187)
Q Consensus 158 TAGASTP-~--~lI~eVi~~l~~ 177 (187)
..|.... . .-.+...+++.+
T Consensus 122 i~~~~~~~~~~~R~~Gf~~a~~~ 144 (269)
T cd06293 122 VGGPDALISARERYAGYREALAE 144 (269)
T ss_pred EecCcccccHHHHHHHHHHHHHH
Confidence 8764321 1 223445555543
No 236
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=47.79 E-value=51 Score=25.40 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHH
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEG 170 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~e 170 (187)
.-+|+-..+..--..|.+-|++.|.+.|.|.++.-..-. |.....||| .-.|.+.|+.
T Consensus 48 ~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~Tei~-------------------~gs~Tvlai---gP~~~~~i~~ 105 (113)
T PRK04322 48 KKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLTQLP-------------------PGTVTALGI---GPAPEEKIDK 105 (113)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCcccC-------------------CCCcEEEEe---CCCCHHHHHH
Confidence 456777766666677777788889999999987654210 123345555 5678899988
Q ss_pred HHHHH
Q 037064 171 VLKKV 175 (187)
Q Consensus 171 Vi~~l 175 (187)
+-..|
T Consensus 106 itg~L 110 (113)
T PRK04322 106 ITGDL 110 (113)
T ss_pred hhCCC
Confidence 86655
No 237
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=47.15 E-value=1.1e+02 Score=27.04 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=50.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+|+.+|.-.+....-.+.+.+.|++. + . ...+. ...=+..+-+|- +..+...++|++|-|||=..-.+.
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~-----~-~--~~~~~-~~~~~~~~v~~~--~~~~~~~~~d~iIaiGGGs~~D~a 94 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDE-----G-E--VDVVI-VEDATYEEVEKV--ESSARDIGADFVIGVGGGRVIDVA 94 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhc-----C-C--eEEEE-eCCCCHHHHHHH--HHHhhhcCCCEEEEeCCchHHHHH
Confidence 57888887666544445555555431 1 0 01121 111233433332 222322479999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
|.+.. .+++|-..|-+.
T Consensus 95 K~~a~--~~~~p~i~iPTT 111 (339)
T cd08173 95 KVAAY--KLGIPFISVPTA 111 (339)
T ss_pred HHHHH--hcCCCEEEecCc
Confidence 98864 356777777654
No 238
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=46.91 E-value=54 Score=24.38 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=29.5
Q ss_pred cCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEe-CCCCCCC
Q 037064 87 EKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWI-DSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~I-e~~~eL~ 127 (187)
+++=++|+-.+- |.|++ ++-..|+.+++|.|.. .+-.||-
T Consensus 31 gkaklViiA~D~-~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG 72 (99)
T PRK01018 31 GKAKLVIVASNC-PKDIKEDIEYYAKLSGIPVYEYEGSSVELG 72 (99)
T ss_pred CCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEECCCHHHHH
Confidence 456677777775 66665 5567899999998775 6888885
No 239
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=46.88 E-value=78 Score=22.97 Aligned_cols=46 Identities=11% Similarity=0.248 Sum_probs=24.0
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCC-ChhhHHHHH
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWN-SSNTSSLQV 108 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~n-SSNT~rL~e 108 (187)
++..+......+...-..+.+..+. .-+..+|+||.+ |.+-..+.+
T Consensus 53 d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~ 100 (121)
T PF02310_consen 53 DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILR 100 (121)
T ss_dssp SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHH
T ss_pred cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhc
Confidence 3444443233333333444444421 247899999987 666655443
No 240
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=46.26 E-value=1.9e+02 Score=24.65 Aligned_cols=123 Identities=24% Similarity=0.311 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHH--HHHHH-HHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA--AQERQ-DAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A--T~~RQ-~av~~La~~~~D~miVVGG~nSS 101 (187)
..|+++.- .+.-.-|..+.+-+.+...+ .| -++. +|+. -.++| +.+..|....+|.+|+.++..+
T Consensus 60 ~~i~vi~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~----~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~- 127 (341)
T PRK10703 60 KSIGLLAT-SSEAPYFAEIIEAVEKNCYQ-KG-----YTLI----LCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP- 127 (341)
T ss_pred CeEEEEeC-CCCCchHHHHHHHHHHHHHH-CC-----CEEE----EEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC-
Confidence 35777653 34445566776766653222 22 1112 3321 23344 3344555567999999987432
Q ss_pred hhHHHHHHHHH-hCCCeEEeCCCCC-CCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 102 NTSSLQVIAED-RGIPSYWIDSEKR-IGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 102 NT~rL~eia~~-~g~~t~~Ie~~~e-L~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
....+.+++ .|+|...++.... ..-...+.-.... +.. .....+..|..+|++-+|..
T Consensus 128 --~~~~~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~-a~~~L~~~G~~~i~~i~~~~ 188 (341)
T PRK10703 128 --EPLLAMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYL-AGRYLIERGHRDIGVIPGPL 188 (341)
T ss_pred --HHHHHHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHH-HHHHHHHCCCCcEEEEeCCc
Confidence 233445556 6899999976431 1100111100011 222 22233435788999987743
No 241
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=46.24 E-value=11 Score=28.29 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=31.1
Q ss_pred chhhhhchhhhhhhccccC--CCcEEEEeeCCCCcH-------HHHHHHHHHHHhccHh
Q 037064 132 MAYKLMHGELVEKENWLPK--GQITIGVTAGASTPD-------KAIEGVLKKVFEIKRE 181 (187)
Q Consensus 132 ~~~~~~~~~~~~~~~wl~~--~~~~IGITAGASTP~-------~lI~eVi~~l~~~~~~ 181 (187)
++|-+..|. .+-..|+.. +-.+|.||.|.|++. ..+.++++.+..++.|
T Consensus 19 mR~VPyNG~-~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvE 76 (97)
T PF06722_consen 19 MRYVPYNGP-AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVE 76 (97)
T ss_dssp -------SS-EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSE
T ss_pred eeecCCCCC-CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcE
Confidence 444444444 344578843 456899999999997 3788899988877554
No 242
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=45.99 E-value=51 Score=28.89 Aligned_cols=45 Identities=24% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEeCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~Ie~ 122 (187)
..+.+...+. ++|++||||-..+-... .|.+.+.++|.+.+.|+-
T Consensus 204 ~~~~a~~~~~--~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~ 249 (285)
T PRK05333 204 RVAAARAALD--AADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNL 249 (285)
T ss_pred HHHHHHHHHh--cCCEEEEECcCceecchhhhHHHHHHCCCeEEEECC
Confidence 3455555553 69999999987777655 678889888887777764
No 243
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=45.70 E-value=72 Score=28.36 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 76 ERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+=++.++++. ..||.++|+ ||.-|.=+..|++++++.+..+|-|=.
T Consensus 73 e~~~~I~~~l-e~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt 122 (303)
T cd02191 73 EVQEAIDNIP-VHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVT 122 (303)
T ss_pred HHHHHHHHHH-cCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEe
Confidence 3455677887 479999988 678899999999999999988777654
No 244
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.49 E-value=1.5e+02 Score=26.77 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=46.9
Q ss_pred CeEEEEEcCCC--ChHHHHHHHHHHHHHHhhhcccccccccccccchhc-HHHHH-HHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTM--IKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAAQE-RQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~-RQ~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+-... ....+..+.+.|++. ..++.+|+.+. +.|.+ =+++++.+-+..+|++|=|||=.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~----------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQA----------GVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHc----------CCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 57888886554 345566676667541 12334455442 12222 122222333347999999999999
Q ss_pred hhhHHHHHHHHHh
Q 037064 101 SNTSSLQVIAEDR 113 (187)
Q Consensus 101 SNT~rL~eia~~~ 113 (187)
-.+.|.+.+....
T Consensus 96 iD~aK~ia~~~~~ 108 (380)
T cd08185 96 MDTAKAIAFMAAN 108 (380)
T ss_pred HHHHHHHHHHhhC
Confidence 9999988776433
No 245
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=45.46 E-value=70 Score=28.40 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+++++.+.+..+|+||-|||-..-.+.|.+.+.. ++|-..|-+.
T Consensus 67 ~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~--~~p~i~IPTt 110 (337)
T cd08177 67 EAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT--GLPIIAIPTT 110 (337)
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh--cCCEEEEcCC
Confidence 3444444335799999999999999998876543 5666666543
No 246
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=45.41 E-value=46 Score=27.72 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.++.+|.. .-.++.|+|+..|+.+..+..+|...++|..-......
T Consensus 53 ~~~c~l~~-~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~ 98 (328)
T cd06351 53 RAVCDLLV-SQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSE 98 (328)
T ss_pred HHHHHHHh-ccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcc
Confidence 34445542 45788899999999999999999999998766554444
No 247
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.32 E-value=1.6e+02 Score=23.73 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=60.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++-.. +.-.-|..+...+.+...+. + -.+.+++ .+.-.++| +.+..+....+|.+|+.+.. .+...
T Consensus 2 igvi~p~-~~~~~~~~~~~gi~~~~~~~-~-----~~~~~~~--~~~~~~~~~~~i~~l~~~~~dgiii~~~~--~~~~~ 70 (265)
T cd06285 2 IGVLVPR-LTDTVMATMYEGIEEAAAER-G-----YSTFVAN--TGDNPDAQRRAIEMLLDRRVDGLILGDAR--SDDHF 70 (265)
T ss_pred EEEEeCC-CCCccHHHHHHHHHHHHHHC-C-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEecCC--CChHH
Confidence 4444433 33345667766666543332 2 1121111 11122344 34555555789999997643 23344
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
|.+ +.+.++|...++.... ....+.+.... +.. .....+..|.++||+-+|...
T Consensus 71 ~~~-~~~~~iPvv~~~~~~~--~~~~V~~d~~~ag~~-a~~~L~~~g~~~i~~i~~~~~ 125 (265)
T cd06285 71 LDE-LTRRGVPFVLVLRHAG--TSPAVTGDDVLGGRL-ATRHLLDLGHRRIAVLAGPDY 125 (265)
T ss_pred HHH-HHHcCCCEEEEccCCC--CCCEEEeCcHHHHHH-HHHHHHHCCCccEEEEeCCcc
Confidence 444 4677899988887432 11112111111 121 222223357889999887543
No 248
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=45.22 E-value=27 Score=32.89 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=39.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-CCC----------------EEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-KID----------------LILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-~~D----------------~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
.+.++|| |.....--.++.+|..+ .+| ++.|||+..|+-+..+..++...++|-.
T Consensus 75 g~~i~Dt-c~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~I 146 (510)
T cd06364 75 GYRIFDT-CNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQV 146 (510)
T ss_pred eEEEEcc-CCchHHHHHHHHHHHhcccccccccccccccCCCCCceEEEECCCchhHHHHHHHHhcccccccc
Confidence 3667888 76655555555666532 122 4689999999999999999988887753
No 249
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=45.14 E-value=1.1e+02 Score=28.08 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=48.1
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchh-cHHH-HHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CHAA-QERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI-C~AT-~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+++.+|+..++... .++.+.+.|++. ..++.+|+.+ .+.| .+=+++++.+.+..+|+||-|||=..-
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~----------gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAA----------GINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHc----------CCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 58888887765543 357777777541 1123334321 1222 223444444444579999999999999
Q ss_pred hhHHHHHHHHHh
Q 037064 102 NTSSLQVIAEDR 113 (187)
Q Consensus 102 NT~rL~eia~~~ 113 (187)
.+-|.+.+....
T Consensus 94 D~AKaia~~~~~ 105 (414)
T cd08190 94 DTAKAANLYASH 105 (414)
T ss_pred HHHHHHHHHHhC
Confidence 998888776543
No 250
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=44.89 E-value=6.6 Score=26.37 Aligned_cols=12 Identities=50% Similarity=0.637 Sum_probs=10.4
Q ss_pred EcCCCChhhHHH
Q 037064 95 VGGWNSSNTSSL 106 (187)
Q Consensus 95 VGG~nSSNT~rL 106 (187)
+-.+||.||.+|
T Consensus 21 ~~dYnShNT~rL 32 (48)
T PF08485_consen 21 VEDYNSHNTERL 32 (48)
T ss_pred ccccCCCCcccc
Confidence 467999999997
No 251
>PRK07283 hypothetical protein; Provisional
Probab=44.69 E-value=61 Score=24.03 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=29.6
Q ss_pred cCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+++-+ +++..--|.|++ ++.+.|+.+++|.+...+-+||-
T Consensus 33 gk~~l-Vi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG 73 (98)
T PRK07283 33 GQAKL-VFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELS 73 (98)
T ss_pred CCccE-EEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 45544 555556666665 66689999999999888888885
No 252
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=44.54 E-value=1.7e+02 Score=23.83 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred hhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC
Q 037064 84 LVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA 161 (187)
+. .++|.+|+++.. ++ .+++...+.++|...+....+-.....+..-... +.. .-+.++..|.++|++.+|.
T Consensus 49 ~~-~~vdgii~~~~~--~~--~~~~~~~~~~~pvV~~~~~~~~~~~~~v~~D~~~a~~~-~~~~l~~~g~~~i~~i~~~ 121 (270)
T cd01544 49 IL-EDVDGIIAIGKF--SQ--EQLAKLAKLNPNLVFVDSNPAPDGFDSVVPDFEQAVEK-ALDYLLELGHTRIGFIGGE 121 (270)
T ss_pred hc-cCcCEEEEecCC--CH--HHHHHHHhhCCCEEEECCCCCCCCCCEEEECHHHHHHH-HHHHHHHcCCCcEEEECCC
Confidence 44 589999998632 22 4444455678999888764221111111111111 111 1222233588999998874
No 253
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=44.35 E-value=68 Score=32.55 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHH---hCCCeEEeCCCCCCC
Q 037064 73 AAQERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAED---RGIPSYWIDSEKRIG 127 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~---~g~~t~~Ie~~~eL~ 127 (187)
....++.+++.|-+..+|.+|||||-.|-.+- +|.+-..+ .|+|...| |.=||
T Consensus 463 ~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgI--PkTID 519 (762)
T cd00764 463 PKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLI--PATVS 519 (762)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEe--ccccc
Confidence 35689999999988899999999999987655 44443322 45676666 55555
No 254
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=44.24 E-value=1.6e+02 Score=23.30 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=46.7
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcH
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPD 165 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~ 165 (187)
.+=|++|++- +-++.++..+++.|+++|.++.-|.+...=+ | .....+-|... +...
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~--------------------L-a~~aD~~l~~~-~~~~ 157 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK--------------------L-LELADIEIHVP-SDDT 157 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc--------------------h-hhhCCEEEEeC-CCCh
Confidence 3679988887 5678899999999999999999998663311 2 22334555554 3344
Q ss_pred HHHHHHHHHHH
Q 037064 166 KAIEGVLKKVF 176 (187)
Q Consensus 166 ~lI~eVi~~l~ 176 (187)
+.++++...+.
T Consensus 158 ~~~~~~~~~~~ 168 (177)
T cd05006 158 PRIQEVHLLIG 168 (177)
T ss_pred HHHHHHHHHHH
Confidence 55777766654
No 255
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=43.99 E-value=89 Score=22.59 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHH-HHHHHHHhCCCeEEeCCCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSS-LQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~~Ie~~~eL 126 (187)
+.++.|. +.+-++++|--+|.+..+ +....+..|.+++.+.+.++.
T Consensus 5 ~~~~~i~--~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~ 51 (139)
T cd05013 5 KAVDLLA--KARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQ 51 (139)
T ss_pred HHHHHHH--hCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHH
Confidence 4566665 578899999888877665 333445567788887666554
No 256
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=43.82 E-value=39 Score=29.88 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=37.9
Q ss_pred cccccchhc----HHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTIC----HAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC----~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.||=| ....-=+.+.+.+.. -.+..|||+..|+-+.....+|.+.++|-.
T Consensus 44 ~~~~~D~~~~~~~~~~~a~~~a~~~~~~--~~v~aiiGp~~S~~~~av~~~~~~~~ip~I 101 (396)
T cd06373 44 TLVFEDSECKCGCSESEAPLVAVDLYFQ--HKPDAFLGPGCEYAAAPVARFAAHWNVPVL 101 (396)
T ss_pred EEEEecCccccccchhhhHHHHHHHHhc--cCCeEEECCCccchhHHHHHHHhcCCCceE
Confidence 566788877 333333334433432 357788999999999999999999988754
No 257
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.55 E-value=1.7e+02 Score=23.53 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=47.2
Q ss_pred EEEEEcCCC-ChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhhH
Q 037064 27 VGIANQTTM-IKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 27 v~vvsQTT~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT~ 104 (187)
|+++.-+ + +-.-+..+.+.+.....+ .| -++.++++ +.-.++|.. +..+....+|.+|+.+...+.-..
T Consensus 2 i~vi~p~-~~~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~ 72 (275)
T cd06317 2 IGYTQNN-VGSHSYQTTYNKAFQAAAEE-DG-----VEVIVLDA--NGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIP 72 (275)
T ss_pred eEEEecc-cCCCHHHHHHHHHHHHHHHh-cC-----CEEEEEcC--CcCHHHHHHHHHHHHHcCCCEEEEecCCccccHH
Confidence 4544432 3 455677777777654333 22 23333332 222233433 444444689999997754322233
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
. .+.+++.++|...++..
T Consensus 73 ~-l~~~~~~~iPvV~~~~~ 90 (275)
T cd06317 73 G-LRKAKQAGIPVVITNSN 90 (275)
T ss_pred H-HHHHHHCCCcEEEeCCC
Confidence 3 45556788998888764
No 258
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=43.53 E-value=23 Score=30.75 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=15.4
Q ss_pred eEEEEEcCC--CChHHHHHHHHHHHH
Q 037064 26 KVGIANQTT--MIKGETEEIGKLVEK 49 (187)
Q Consensus 26 kv~vvsQTT--~~~~~~~~i~~~l~~ 49 (187)
|||++.... -......++.++|++
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~ 26 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLE 26 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 577777776 345556777777765
No 259
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=43.44 E-value=1.2e+02 Score=26.91 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=31.2
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.++.+. .++|++|-|||=..-.+-|.+... .++|-+.|-+-
T Consensus 73 ~~~~~~-~~~d~IIaIGGGs~~D~aK~vA~~--~~~p~i~IPTT 113 (348)
T cd08175 73 VLKELE-RDTDLIIAVGSGTINDITKYVSYK--TGIPYISVPTA 113 (348)
T ss_pred HHHHhh-ccCCEEEEECCcHHHHHHHHHHHh--cCCCEEEecCc
Confidence 444444 379999999999999999987643 56788888765
No 260
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.28 E-value=1.7e+02 Score=23.38 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGV 157 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGI 157 (187)
+.+..|....+|.+|+.+... |...| +.+++.|+|...++....-.....+...... ++..... .+..|.++|++
T Consensus 46 ~~~~~l~~~~~dgiii~~~~~--~~~~l-~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~-l~~~g~~~i~~ 121 (267)
T cd06283 46 EYLESLLAYQVDGLIVNPTGN--NKELY-QRLAKNGKPVVLVDRKIPELGVDTVTLDNYEAAKEAVDH-LIEKGYERILF 121 (267)
T ss_pred HHHHHHHHcCcCEEEEeCCCC--ChHHH-HHHhcCCCCEEEEcCCCCCCCCCEEEeccHHHHHHHHHH-HHHcCCCcEEE
Confidence 345556656899999987643 33334 5566788999999864221111111111111 2222221 12247789998
Q ss_pred eeCCCCc----HHHHHHHHHHHHh
Q 037064 158 TAGASTP----DKAIEGVLKKVFE 177 (187)
Q Consensus 158 TAGASTP----~~lI~eVi~~l~~ 177 (187)
-+|.... ..-.+...+.+.+
T Consensus 122 l~~~~~~~~~~~~r~~g~~~~~~~ 145 (267)
T cd06283 122 VTEPLDEISPRMERYEGFKEALAE 145 (267)
T ss_pred EecCccccccHHHHHHHHHHHHHH
Confidence 8875542 2344555555543
No 261
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=42.86 E-value=1.8e+02 Score=26.02 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=45.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhc-HHHHHHHHHHHHhh-hcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAAQERQDAVYKLV-EEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ~av~~La-~~~~D~miVVGG~nSSN 102 (187)
+|+.+|+-.+.. ....+.+.|++ . ..++.+|+.++ +.|.+.=+.+.+++ +..+|+||-|||=.+-.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~----~------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D 91 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKP----L------GTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLD 91 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHH----c------CCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHH
Confidence 578888755543 33444444543 1 12234455443 44444333333443 23699999999999999
Q ss_pred hHHHHHHHHHh
Q 037064 103 TSSLQVIAEDR 113 (187)
Q Consensus 103 T~rL~eia~~~ 113 (187)
+.|.+.+...+
T Consensus 92 ~aK~ia~~~~~ 102 (367)
T cd08182 92 TAKALAALLGA 102 (367)
T ss_pred HHHHHHHHHhC
Confidence 99988776433
No 262
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.68 E-value=51 Score=26.12 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=30.7
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++.- .++.++..+++.|+++|.++..|.+..+
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 36799888875 3566777888889999999999987544
No 263
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=42.64 E-value=38 Score=27.27 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=42.4
Q ss_pred EEEEcC----CCChhhHHHHHHHHHhCCCeEEeCC-CCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEeeCCC-Cc
Q 037064 92 ILVVGG----WNSSNTSSLQVIAEDRGIPSYWIDS-EKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVTAGAS-TP 164 (187)
Q Consensus 92 miVVGG----~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGITAGAS-TP 164 (187)
+|++|+ ..-+|+.-|..+.++.|.......- ++|.+. |+ ..-.+|+. .++..|=+|+|+| +|
T Consensus 9 vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~---i~--------~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 9 ILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQ---IR--------AQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred EEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHH---HH--------HHHHHHHhcCCCCEEEECCCcCCCC
Confidence 455666 5567999999999999865332211 222211 00 01125541 3577777777766 46
Q ss_pred HHHHHHHHHHH
Q 037064 165 DKAIEGVLKKV 175 (187)
Q Consensus 165 ~~lI~eVi~~l 175 (187)
.+.+-+++..+
T Consensus 78 ~D~t~eal~~l 88 (163)
T TIGR02667 78 RDVTPEALEPL 88 (163)
T ss_pred CCCcHHHHHHH
Confidence 66777777666
No 264
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=42.54 E-value=2e+02 Score=24.01 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHH-HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 76 ERQ-DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 76 ~RQ-~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+| +.+..|..+.+|.+||++- .+.=....++-+++.|+|...+++.
T Consensus 43 ~~q~~~i~~l~~~~vdgiIi~~~-~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 43 EGQIEVVNSLIAQKVDAIAISAN-DPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC-ChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 444 4455565568999999864 3222234455677789999888864
No 265
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=42.34 E-value=51 Score=29.45 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=49.4
Q ss_pred EEEEEcCCCChhhHHHH--HHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEeeCCCCcHHH
Q 037064 91 LILVVGGWNSSNTSSLQ--VIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVTAGASTPDKA 167 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~--eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGITAGASTP~~l 167 (187)
-+|||.+--|.||...+ .+|+..++|-..+.+-++|-. -+- .....||||.=-+-=..-
T Consensus 150 kLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~------------------AIGkktraVVAItdV~~EDk~~ 211 (266)
T PTZ00365 150 KLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGK------------------LVHQKTAAVVAIDNVRKEDQAE 211 (266)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHH------------------HhCCCCceEEEecccCHHHHHH
Confidence 35566667788998875 999999999999999999953 120 236788888755555555
Q ss_pred HHHHHHHHHh
Q 037064 168 IEGVLKKVFE 177 (187)
Q Consensus 168 I~eVi~~l~~ 177 (187)
.+.+++.+..
T Consensus 212 l~~lv~~~~~ 221 (266)
T PTZ00365 212 FDNLCKNFRA 221 (266)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 266
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=42.13 E-value=1.9e+02 Score=26.01 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=46.6
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchhc-HHHHH-HHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAAQE-RQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~-RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+-..+... -++.+.+.|++. ..++.+|+.+- +.|.+ =++++..+...++|+||-|||=.+-
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~ 96 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGA----------GIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVI 96 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 57888876654332 356666666541 11234455441 12222 1223333333579999999999999
Q ss_pred hhHHHHHHHHHh
Q 037064 102 NTSSLQVIAEDR 113 (187)
Q Consensus 102 NT~rL~eia~~~ 113 (187)
.+.|.+-+...+
T Consensus 97 D~aK~ia~~~~~ 108 (374)
T cd08189 97 DCAKAIAARAAN 108 (374)
T ss_pred HHHHHHHHHHhC
Confidence 999987776544
No 267
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=41.95 E-value=2.1e+02 Score=24.01 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=44.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
|||++..+ +.-.-|..+...+.+... ..| -++.++++-=+.-.++| +.+..|....+|.+|+.+...++-..
T Consensus 1 ~igvvvp~-~~n~f~~~~~~gi~~~a~-~~g-----~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~ 73 (295)
T TIGR02955 1 KLCALYPH-LKDSYWLSINYGMVEQAK-HLG-----VELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNH 73 (295)
T ss_pred CeeEEecC-CCcHHHHHHHHHHHHHHH-HhC-----CEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhH
Confidence 46666543 444567777776665322 222 12222211000022344 45555555789999998643222123
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
.|.+ +. .|+|...+.+.
T Consensus 74 ~l~~-~~-~~iPvV~~~~~ 90 (295)
T TIGR02955 74 DLAQ-LT-KSIPVFALVNQ 90 (295)
T ss_pred HHHH-Hh-cCCCEEEEecC
Confidence 3433 33 48898777443
No 268
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=41.95 E-value=77 Score=22.96 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEee
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTA 159 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITA 159 (187)
.+.++. ..+|+++..-..+.+...+|+|-. ..|+|...-.. .. ..|+ .. ...|+.-
T Consensus 63 e~~~~l-~~~dv~l~p~~~~~~~~~k~~e~~-~~G~pvi~~~~--~~------------------~~~~-~~-~~~~~~~ 118 (135)
T PF13692_consen 63 ELPEIL-AAADVGLIPSRFNEGFPNKLLEAM-AAGKPVIASDN--GA------------------EGIV-EE-DGCGVLV 118 (135)
T ss_dssp HHHHHH-HC-SEEEE-BSS-SCC-HHHHHHH-CTT--EEEEHH--HC------------------HCHS-----SEEEE-
T ss_pred HHHHHH-HhCCEEEEEeeCCCcCcHHHHHHH-HhCCCEEECCc--ch------------------hhhe-ee-cCCeEEE
Confidence 455555 379999987765667778999988 57777654333 11 1333 12 3466666
Q ss_pred CCCCcHHHHHHHHHHHH
Q 037064 160 GASTPDKAIEGVLKKVF 176 (187)
Q Consensus 160 GASTP~~lI~eVi~~l~ 176 (187)
+.+|+.+.+.+...+.
T Consensus 119 -~~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 119 -ANDPEELAEAIERLLN 134 (135)
T ss_dssp -TT-HHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHhc
Confidence 8899999998887764
No 269
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=41.77 E-value=60 Score=23.78 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=30.1
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+-|++|+|.- -+|.++.+.++.|+++|.++.-|.+..
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 46888888863 466678888999999999999888764
No 270
>PRK15027 xylulokinase; Provisional
Probab=41.68 E-value=1.6e+02 Score=27.31 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=36.2
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSE 123 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~ 123 (187)
..||+....--+.+++.. ...+-++++|| .+++.-+.++... .|.|.......
T Consensus 367 Egia~~~~~~~~~l~~~g-~~~~~i~~~GG--ga~s~~w~Qi~Adv~g~pv~~~~~~ 420 (484)
T PRK15027 367 EGVGYALADGMDVVHACG-IKPQSVTLIGG--GARSEYWRQMLADISGQQLDYRTGG 420 (484)
T ss_pred HHHHHHHHHHHHHHHHcC-CCccEEEEeCc--ccCCHHHHHHHHHHhCCeEEeecCC
Confidence 347777776666776643 35788999999 4677777887766 46777555443
No 271
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=41.67 E-value=1.2e+02 Score=23.94 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=15.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHH
Q 037064 91 LILVVGGWNSSNTSSLQVIAED 112 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~ 112 (187)
+.||-|+ .+.||+++++...+
T Consensus 2 i~IiY~S-~tGnTe~vA~~Ia~ 22 (167)
T TIGR01752 2 IGIFYGT-DTGNTEGIAEKIQK 22 (167)
T ss_pred EEEEEEC-CCChHHHHHHHHHH
Confidence 3456666 99999999986544
No 272
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=41.66 E-value=99 Score=27.53 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=39.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.|+=|... .=..++..++.. .+..|||+..|+-+.....+|...++|-+
T Consensus 43 ~~~~~d~~~~~~-~~~~~~~~l~~~--~v~aiiGp~~s~~~~~va~ia~~~~iP~I 95 (387)
T cd06386 43 NVHYEDSDCGNE-ALFSLVDRSCAR--KPDLILGPVCEYAAAPVARLASHWNIPMI 95 (387)
T ss_pred EEEEeCCcCCch-HHHHHHHHHHhh--CCCEEECCCCccHHHHHHHHHHhCCCcEE
Confidence 566789999752 223445566533 45578999999999999999999988744
No 273
>PRK09190 hypothetical protein; Provisional
Probab=41.42 E-value=1.6e+02 Score=25.33 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=42.0
Q ss_pred cCCCEEEEEcCCCChhh-HHHHHHHHH------hCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEe
Q 037064 87 EKIDLILVVGGWNSSNT-SSLQVIAED------RGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVT 158 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT-~rL~eia~~------~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGIT 158 (187)
+++- +|++..--|.|| ++|...|+. +++|.+..-+.+||.. -|- .....|||+
T Consensus 126 gk~~-Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~------------------AlGr~~~~~vav~ 186 (220)
T PRK09190 126 GEAA-ALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAELGL------------------AFGRENVIHAALL 186 (220)
T ss_pred CCce-EEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHHHHH------------------HhCCCceeEEEEc
Confidence 4564 444555556665 566678887 7788888888888852 231 135578887
Q ss_pred eCCCCcHHHHHHHHHHHHhc
Q 037064 159 AGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 159 AGASTP~~lI~eVi~~l~~~ 178 (187)
.|. +.+.++..+..+
T Consensus 187 d~g-----fA~~l~~~~~rl 201 (220)
T PRK09190 187 AGG-----AAERVVKRAQRL 201 (220)
T ss_pred ChH-----HHHHHHHHHHHH
Confidence 765 555555555443
No 274
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=41.42 E-value=33 Score=27.27 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred cCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeC
Q 037064 87 EKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAG 160 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAG 160 (187)
...|.+|+-||+.|.+ ...+.++.+.. +..+...+|||-|
T Consensus 41 ~~~d~iii~Gg~~~~~d~~~~~~~i~~~----------------------------------~~~~~PilGIC~G 81 (192)
T PF00117_consen 41 DDYDGIIISGGPGSPYDIEGLIELIREA----------------------------------RERKIPILGICLG 81 (192)
T ss_dssp TTSSEEEEECESSSTTSHHHHHHHHHHH----------------------------------HHTTSEEEEETHH
T ss_pred cCCCEEEECCcCCccccccccccccccc----------------------------------cccceEEEEEeeh
No 275
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=41.38 E-value=1.4e+02 Score=26.75 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=51.8
Q ss_pred EEEEEcCCCChhhH--HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEeeCCCCcHHH
Q 037064 91 LILVVGGWNSSNTS--SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVTAGASTPDKA 167 (187)
Q Consensus 91 ~miVVGG~nSSNT~--rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGITAGASTP~~l 167 (187)
-++||.+-=|.|+. +|-.+|+..++|-..+.+-++|- .|+- .....|+||--.+--..-
T Consensus 150 kLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG------------------~AIGkKtravVAItD~g~ed~~~ 211 (263)
T PTZ00222 150 RMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLG------------------DAIGRKTATCVAITDVNAEDEAA 211 (263)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHH------------------HHHCCCCCeEEEEeeCCcccHHH
Confidence 45566666788887 58999999999999999999995 4441 136789999777766666
Q ss_pred HHHHHHHHHh
Q 037064 168 IEGVLKKVFE 177 (187)
Q Consensus 168 I~eVi~~l~~ 177 (187)
...+++.+..
T Consensus 212 l~~lv~~~~~ 221 (263)
T PTZ00222 212 LKNLIRSVNA 221 (263)
T ss_pred HHHHHHHHHH
Confidence 6777777654
No 276
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=41.28 E-value=1.8e+02 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 89 IDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 89 ~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
.|++|.|||=..-.+.+.+.....+|+|-..|-+
T Consensus 82 ~d~IIavGGGsv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 82 SSTIIALGGGVVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHccCCCEEEecC
Confidence 4999999999999999998866677888888877
No 277
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=41.26 E-value=35 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=21.5
Q ss_pred EEEEEcCC-CChhhHHHHHHHHHh----CCCeEEe
Q 037064 91 LILVVGGW-NSSNTSSLQVIAEDR----GIPSYWI 120 (187)
Q Consensus 91 ~miVVGG~-nSSNT~rL~eia~~~----g~~t~~I 120 (187)
++++.|+. ..|||.+|++.+.+. |..+-.|
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i 37 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVI 37 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 57788886 689999999887663 4444444
No 278
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=41.24 E-value=2e+02 Score=23.54 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=30.3
Q ss_pred HHHHHHHH-hhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 76 ERQDAVYK-LVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 76 ~RQ~av~~-La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
..++++.+ |...++|.+||.+... |. ..++.+++.|+|...+...
T Consensus 42 ~~~~~~~~~l~~~~vdgvi~~~~~~--~~-~~~~~l~~~~iPvv~~~~~ 87 (269)
T cd06297 42 RLKRYLESTTLAYLTDGLLLASYDL--TE-RLAERRLPTERPVVLVDAE 87 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcc--Ch-HHHHHHhhcCCCEEEEccC
Confidence 34455543 5556899999997543 33 4455566788999999864
No 279
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=41.07 E-value=72 Score=27.17 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCC
Q 037064 77 RQDAVYKLVEEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~ 122 (187)
..+++.+.+ .++|++||||-.-.-. .+.|.+.++ .|.+.+.|.-
T Consensus 165 ~~~~~~~~~-~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~ 209 (235)
T cd01408 165 FFSHMEEDK-EEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINR 209 (235)
T ss_pred HHHHHHHHH-hcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeC
Confidence 334555666 4799999999863322 345777776 5677777763
No 280
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=41.06 E-value=31 Score=27.13 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=28.9
Q ss_pred HhhhcCCCEEEEE---cCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 83 KLVEEKIDLILVV---GGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 83 ~La~~~~D~miVV---GG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
.+. ..||.+||. |=..|+=.++=.+.+++.|.|.|+.
T Consensus 75 ~~L-~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~~~ 114 (116)
T PF09152_consen 75 PFL-DACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVFLY 114 (116)
T ss_dssp HHH-HH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEEEH
T ss_pred HHH-HhcceeEEecCCCccccccHHHHHHHHHHcCCeEEEe
Confidence 355 479999999 8899999999999999999998874
No 281
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=40.98 E-value=51 Score=29.34 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=36.1
Q ss_pred cccccch----hcHHHHHHHHHH-HHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNT----ICHAAQERQDAV-YKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nT----IC~AT~~RQ~av-~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.++|+ .|....--..++ .++. ..+++ |||+..|+-+..+..+|...++|..
T Consensus 44 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~v~a--viGp~~S~~~~av~~i~~~~~iP~I 101 (399)
T cd06384 44 TLLNKSSELNGGCSESLAPLHAVDLKLY-SDPDV--FFGPGCVYPTASVARFATHWRLPLI 101 (399)
T ss_pred EEEEeccCCccccchhhhHHHHHHHHhh-cCCCE--EECCCCchHHHHHHHHHhhcCCcEE
Confidence 4556665 666443322222 2344 35664 8899999999999999999998854
No 282
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=40.80 E-value=46 Score=25.24 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=43.5
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC--CCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK--RIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~--eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
-.-||+...+...-..|.+.|++.|.+.+.|.++. ++++ .....||| .=.|.+.
T Consensus 50 ~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~Tei~p---------------------gs~Tvlai---gP~~~~~ 105 (116)
T PF01981_consen 50 QKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRTEIPP---------------------GSVTVLAI---GPAPKEE 105 (116)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSSSST---------------------TCEEEEEE---EEEEHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCCcCCC---------------------CCeEEEEE---CcCCHHH
Confidence 34578888888888889999999999999998876 5554 22334444 2347888
Q ss_pred HHHHHHHH
Q 037064 168 IEGVLKKV 175 (187)
Q Consensus 168 I~eVi~~l 175 (187)
|++|...|
T Consensus 106 i~~it~~L 113 (116)
T PF01981_consen 106 IDKITGHL 113 (116)
T ss_dssp HHHHHTTS
T ss_pred HHHHhCcC
Confidence 88876544
No 283
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=40.80 E-value=34 Score=30.66 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=44.2
Q ss_pred hhcHHHHHHHHHHHHh-hhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcc
Q 037064 69 TICHAAQERQDAVYKL-VEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENW 147 (187)
Q Consensus 69 TIC~AT~~RQ~av~~L-a~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~w 147 (187)
+.+..+..--.++.++ ...+.|++||.|++++.=...|+ |...++|..|||.- |.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~ala--A~~~~ipv~HieaG--lRs------------------- 103 (346)
T PF02350_consen 47 SMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALA--AFYLNIPVAHIEAG--LRS------------------- 103 (346)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHH--HHHTT-EEEEES--------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHH--HHHhCCCEEEecCC--CCc-------------------
Confidence 3444444444433332 23479999999998876555443 33567888888754 110
Q ss_pred ccCCCcEEEEeeCCCCcHHHHHHHHHHHHhccH
Q 037064 148 LPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180 (187)
Q Consensus 148 l~~~~~~IGITAGASTP~~lI~eVi~~l~~~~~ 180 (187)
==+|.| .||+.+..++++|..+.+
T Consensus 104 -------~d~~~g--~~de~~R~~i~~la~lhf 127 (346)
T PF02350_consen 104 -------GDRTEG--MPDEINRHAIDKLAHLHF 127 (346)
T ss_dssp -------S-TTSS--TTHHHHHHHHHHH-SEEE
T ss_pred -------cccCCC--Cchhhhhhhhhhhhhhhc
Confidence 001123 589999999988876633
No 284
>KOG3387 consensus 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=40.75 E-value=77 Score=25.49 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=60.5
Q ss_pred HHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGV 157 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGI 157 (187)
++.+.|..+...+++++.+-.= -=|.||-.+|+..|+|..||-+..-|-- . . ||. --+ .....++|
T Consensus 41 EaTk~Lnrgi~~~Vv~aaD~kP~eIt~HLp~LcedknVp~v~Vpsk~alG~-~-c------g~~----~~~-r~~~a~~i 107 (131)
T KOG3387|consen 41 EATKTLNRGISEFVVMAADVKPLEITLHLPLLCEDKNVPYVFVPSKQALGL-A-C------GEL----VVL-RPVIACSI 107 (131)
T ss_pred hHhhhhccCceeEEEEEccCCHHHHHHHhHHHhhccCCceEEeeccHHhhh-h-h------hhH----hhc-CcceeEEE
Confidence 4566677667777777777443 3488999999999999999998877742 0 0 110 112 34667888
Q ss_pred ee-CCCCcHHHHHHHHHHHHh
Q 037064 158 TA-GASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 158 TA-GASTP~~lI~eVi~~l~~ 177 (187)
|+ +||-|-.+++.+-..++.
T Consensus 108 ~~~~~~~~~~~~q~l~~~~~~ 128 (131)
T KOG3387|consen 108 TTNEASIPLSQIQSLKRAIER 128 (131)
T ss_pred EeccccchhhHHHHhHHHHHH
Confidence 76 899999988887766654
No 285
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=40.69 E-value=1.6e+02 Score=23.13 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=37.5
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHH-HHHhCCCeEEeCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVI-AEDRGIPSYWIDS 122 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~ei-a~~~g~~t~~Ie~ 122 (187)
..|+..+...-+.+++......+-|+|.||-- +...|.++ |.-.|.|.+..+.
T Consensus 129 Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~--~n~~~~q~~Advl~~~V~~~~~ 182 (198)
T PF02782_consen 129 EGIAFSLRQILEELEELTGIPIRRIRVSGGGA--KNPLWMQILADVLGRPVVRPEV 182 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCESEEEEESGGG--GSHHHHHHHHHHHTSEEEEESS
T ss_pred HhHHHHHHHhhhhccccccccceeeEeccccc--cChHHHHHHHHHhCCceEeCCC
Confidence 45888999999999998435789999998865 44555554 4335667766554
No 286
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=40.65 E-value=58 Score=25.91 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=32.7
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+=|++|++.- .++.++..+++.|++.|.+++.|.+..+
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 36899998874 5788999999999999999999987543
No 287
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=40.05 E-value=71 Score=22.66 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
-..+.|++-+.|++|+.|+..++ ..+..++.|++.+.+....
T Consensus 52 ~~~E~l~~l~pDlvi~~~~~~~~----~~~~l~~~~i~~~~~~~~~ 93 (148)
T cd00636 52 PNLEKIAALKPDLIIANGSGLEA----WLDKLSKIAIPVVVVDEAS 93 (148)
T ss_pred CCHHHHhccCCCEEEEecccchh----HHHHHHHhCCCEEEECCCC
Confidence 33444544579999988876655 4555566777888776653
No 288
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.85 E-value=95 Score=26.55 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.9
Q ss_pred cCCCEEEEEcCCCChhh
Q 037064 87 EKIDLILVVGGWNSSNT 103 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT 103 (187)
...|++||+||=-+=|.
T Consensus 56 ~~~d~ivv~GGDGTl~~ 72 (293)
T TIGR00147 56 FGVDTVIAGGGDGTINE 72 (293)
T ss_pred cCCCEEEEECCCChHHH
Confidence 46899999999877654
No 289
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=39.84 E-value=70 Score=29.62 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=50.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+|.|-+=+--+.......+..|+..+.. + -++++.+.+ .-.-.-.. ..+|++|+=||..+.-.+.
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p---------~----y~V~~v~~~-~l~~~pw~-~~~~LlV~PGG~d~~y~~~ 66 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSP---------H----YAVIPVTAD-ELLNEPWQ-SKCALLVMPGGADLPYCRS 66 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCC---------C----eEEEEeCHH-HhhcCccc-cCCcEEEECCCcchHHHHh
Confidence 3455555555566667777777652111 1 234444332 11111233 3689999999987755444
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
|-.-..++ | .+|+..|-.=+||||||
T Consensus 67 l~~~g~~~------------------I------------r~fV~~GG~YlGiCAGa 92 (367)
T PF09825_consen 67 LNGEGNRR------------------I------------RQFVENGGGYLGICAGA 92 (367)
T ss_pred hChHHHHH------------------H------------HHHHHcCCcEEEECcch
Confidence 43332111 2 36775678889999997
No 290
>PRK06547 hypothetical protein; Provisional
Probab=39.71 E-value=73 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
|.++..++....-+++|.|..-|..|.--..+++..+.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 56677777667778888899999998888888888777766554
No 291
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=39.49 E-value=1.7e+02 Score=24.82 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=38.7
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
..+|.+|+++- .+ ..+.+..++.+.|..+|+...+-.....+.-.... +.... ...+..|.++||+-+|...
T Consensus 113 ~~vDgiI~~~~-~~---~~~~~~l~~~~~pvV~~~~~~~~~~~~~V~~D~~~~~~~a~-~~l~~~G~~~i~~i~~~~~ 185 (327)
T PRK10339 113 KNVTGILIVGK-PT---PALRAAASALTDNICFIDFHEPGSGYDAVDIDLARISKEII-DFYINQGVNRIGFIGGEDE 185 (327)
T ss_pred ccCCEEEEeCC-CC---HHHHHHHHhcCCCEEEEeCCCCCCCCCEEEECHHHHHHHHH-HHHHHCCCCeEEEeCCccc
Confidence 57999999983 22 34445555778899888764321111111111111 11122 2233358889999987543
No 292
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=38.86 E-value=2.1e+02 Score=23.17 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=47.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhccccc-ccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVEN-VNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
|||++.- ++-.-|..+++-+.+.+.+. |... ..-.+.+.|+-.... .-+..+++|....+|++|++|. +++.
T Consensus 1 ~igv~~~--~~~~~~~~~~~gi~~~~~~~-g~~~g~~v~l~~~~~~~~~~-~~~~~~~~l~~~~vd~iI~~~~---~~~~ 73 (281)
T cd06325 1 KVGILQL--VEHPALDAARKGFKDGLKEA-GYKEGKNVKIDYQNAQGDQS-NLPTIARKFVADKPDLIVAIAT---PAAQ 73 (281)
T ss_pred CeEEecC--CCCcchHHHHHHHHHHHHHh-CccCCceEEEEEecCCCCHH-HHHHHHHHHHhcCCCEEEEcCc---HHHH
Confidence 4666663 55556777777777644332 1100 001123333332332 2345555666678999999864 2333
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
.+. ..+.+.|..++...
T Consensus 74 ~~~--~~~~~iPvV~~~~~ 90 (281)
T cd06325 74 AAA--NATKDIPIVFTAVT 90 (281)
T ss_pred HHH--HcCCCCCEEEEecC
Confidence 332 44567888888643
No 293
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=38.60 E-value=49 Score=27.76 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=45.2
Q ss_pred EEEEEcCCCC------hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhh-hhhhcccc-CCCcEEEEeeCCC
Q 037064 91 LILVVGGWNS------SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGEL-VEKENWLP-KGQITIGVTAGAS 162 (187)
Q Consensus 91 ~miVVGG~nS------SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~-~~~~~wl~-~~~~~IGITAGAS 162 (187)
.+|+||..-+ +|+.-|.+..++.|...+.+.. .+-+++. .+. ..-.+|+. .++..|=+|+|+|
T Consensus 7 aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~--~iVpDd~-------~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 7 GLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIET--RLIPDEQ-------DLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred EEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEE--EECCCCH-------HHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 4667887433 5888999999998643332211 1111100 000 12346773 2577777777776
Q ss_pred -CcHHHHHHHHHHHHh
Q 037064 163 -TPDKAIEGVLKKVFE 177 (187)
Q Consensus 163 -TP~~lI~eVi~~l~~ 177 (187)
+|..++-+++..+.+
T Consensus 78 ~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 78 PARRDVTPEATLAVAD 93 (193)
T ss_pred CCCCCcHHHHHHHHhC
Confidence 577777777777653
No 294
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=38.54 E-value=1.1e+02 Score=27.99 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhh-hcCCCEEEEEcCCCChh--------hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhh
Q 037064 72 HAAQERQDAVYKLV-EEKIDLILVVGGWNSSN--------TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 72 ~AT~~RQ~av~~La-~~~~D~miVVGG~nSSN--------T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
+||---..++..+. .+++|+++|=.++--+| |-.|+-+|+.+|+|-|-.--..-||.. + ..|+.+
T Consensus 216 PatLItDS~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~--l----~tG~eI 289 (354)
T KOG1468|consen 216 PATLITDSMVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLS--L----ATGDEI 289 (354)
T ss_pred cchhhhhHHHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccc--c----CCCCee
Confidence 34444444444443 35899998877776666 568999999999999877666655530 1 122221
Q ss_pred --hhhc---ccc-CCCcEEEEeeC---------CCCcHHHHHHHHHHHHhccHhh
Q 037064 143 --EKEN---WLP-KGQITIGVTAG---------ASTPDKAIEGVLKKVFEIKREE 182 (187)
Q Consensus 143 --~~~~---wl~-~~~~~IGITAG---------ASTP~~lI~eVi~~l~~~~~~~ 182 (187)
|+.. +.. .|-..|+|-+- -=||..||..++.-...+..++
T Consensus 290 iIEERp~~Em~~v~gg~~v~Iaapgi~vwnPAFDvTPa~LItgIiTe~g~f~~~~ 344 (354)
T KOG1468|consen 290 IIEERPPAEMTHVTGGEGVRIAAPGINVWNPAFDVTPAELITGIITEKGVFTPEE 344 (354)
T ss_pred EEeecCchHheeecCCcceEecCCCCCccCccccCCHHHHHHHHhhhccccChHH
Confidence 2211 110 11112333221 1389999999988776655544
No 295
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=38.54 E-value=89 Score=28.68 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCC-eEEeCCCC
Q 037064 82 YKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIP-SYWIDSEK 124 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~-t~~Ie~~~ 124 (187)
..+. +..|.+|-+||-.|+-++..+.+|+..|.+ .+.+|+..
T Consensus 58 eal~-~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~ 100 (323)
T COG2515 58 EALR-KGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE 100 (323)
T ss_pred hhhh-cCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc
Confidence 3455 579999999999999999999999999976 56667766
No 296
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=38.42 E-value=1.9e+02 Score=24.52 Aligned_cols=39 Identities=15% Similarity=-0.028 Sum_probs=31.6
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+=|++|++.- ..+.++..+++.|+++|.++..|.+..+
T Consensus 174 ~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~ 213 (278)
T PRK11557 174 SPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTP 213 (278)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 47899998864 3466677899999999999999998754
No 297
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.41 E-value=2.1e+02 Score=23.01 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=58.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++-.. +.-.-|..+..-+.+...+ .| -.+.++++ +...++|.. +..|....+|.+|+++...++..
T Consensus 2 i~vi~~~-~~~~~~~~~~~gi~~~~~~-~g-----y~~~~~~~--~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~-- 70 (265)
T cd06290 2 IGVLTQD-FASPFYGRILKGMERGLNG-SG-----YSPIIATG--HWNQSRELEALELLKSRRVDALILLGGDLPEEE-- 70 (265)
T ss_pred EEEEECC-CCCchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHH--
Confidence 4555543 2334456666666543222 22 12222222 223355544 44565567999999987655432
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA 161 (187)
+..+ ..+.|...|....+=.....+.+.... +.... ...+..|..+|++-+|-
T Consensus 71 ~~~~--~~~iPvV~i~~~~~~~~~~~V~~d~~~a~~~~~-~~l~~~g~~~i~~i~~~ 124 (265)
T cd06290 71 ILAL--AEEIPVLAVGRRVPGPGAASIAVDNFQGGYLAT-QHLIDLGHRRIAHITGP 124 (265)
T ss_pred HHHH--hcCCCEEEECCCcCCCCCCEEEECcHHHHHHHH-HHHHHCCCCeEEEEeCc
Confidence 3333 347899999874321111111111111 22211 12233478899998775
No 298
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=38.40 E-value=83 Score=26.57 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=30.1
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh---HHHHHHHHHhCCCeEEeCC
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT---SSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT---~rL~eia~~~g~~t~~Ie~ 122 (187)
++.|+.--.. ...+.+...+. ++|++||||- |... .+|.+.++ .|.+...|+-
T Consensus 150 vv~fge~~~~-~~~~~~~~~~~--~~DlllviGT--Sl~v~p~~~l~~~~~-~~~~~i~iN~ 205 (225)
T cd01411 150 IVLYEEMLNE-SVIEEAIQAIE--KADLLVIVGT--SFVVYPFAGLIDYRQ-AGANLIAINK 205 (225)
T ss_pred EEEcCCCCCH-HHHHHHHHHHh--cCCEEEEECc--CCeehhHHHHHHHHh-CCCeEEEECC
Confidence 3334443333 23556665554 6999999993 5443 45655543 4666666654
No 299
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=38.18 E-value=1.2e+02 Score=28.75 Aligned_cols=55 Identities=9% Similarity=0.147 Sum_probs=37.3
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHH-HHhCCCeEEeCCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIA-EDRGIPSYWIDSEK 124 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia-~~~g~~t~~Ie~~~ 124 (187)
.-||+....=-+.+++.- ...|-|+++||--| |+..+.++- --.|.|.+..++.+
T Consensus 416 Egia~~~~~~l~~l~~~g-~~~~~i~~~GGg~a-~s~~w~Qi~Adv~g~pV~~~~~~e 471 (536)
T TIGR01234 416 EATAFGTRMIMETFTDSG-VPVEELMAAGGIAR-KNPVIMQIYADVTNRPLQIVASDQ 471 (536)
T ss_pred HHHHHHHHHHHHHHHhcC-CCcceEEEeCCccc-cCHHHHHHHHHhhCCeeEeccCCc
Confidence 448888888888887743 46789999999622 335555544 33577887777643
No 300
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=38.10 E-value=1.5e+02 Score=21.29 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=56.2
Q ss_pred cccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe-CCCCCCCCCCcchhhhhchhhhh
Q 037064 65 ISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI-DSEKRIGPGNKMAYKLMHGELVE 143 (187)
Q Consensus 65 ~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I-e~~~eL~~~~~~~~~~~~~~~~~ 143 (187)
-++.+.|..-..+...+.++.+ .+..+.|... |.|-..+.+.+++.+.+--.+ +...++...-.+.+.|
T Consensus 26 ~F~~~~C~~C~~~~~~l~~~~~-~~~~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P------- 95 (123)
T cd03011 26 YFWATWCPVCRFTSPTVNQLAA-DYPVVSVALR--SGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP------- 95 (123)
T ss_pred EEECCcChhhhhhChHHHHHHh-hCCEEEEEcc--CCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc-------
Confidence 3567889988888889999984 6776666543 446677778888877542222 2212221100000000
Q ss_pred hhccccCCCcEEEEeeCCCCcHHHHHHH
Q 037064 144 KENWLPKGQITIGVTAGASTPDKAIEGV 171 (187)
Q Consensus 144 ~~~wl~~~~~~IGITAGASTP~~lI~eV 171 (187)
..--+..+. .+.+..|-.+++.+.+.|
T Consensus 96 ~~~vid~~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 96 AIVIVDPGG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred EEEEEcCCC-eEEEEeccCCHHHHHhhc
Confidence 001122233 788999999999887764
No 301
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=37.98 E-value=2e+02 Score=25.80 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=44.9
Q ss_pred CeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchh-cHHHHHH-HHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CHAAQER-QDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI-C~AT~~R-Q~av~~La~~~~D~miVVGG~nSS 101 (187)
+|+.+|+-..+.. +.++.+.+.|++. ..++.+|+.+ -+.|.+- .++++.+.+..+|++|=|||=..-
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAA----------GIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 6888888766433 2456676666541 1122223221 1122221 223333333579999999999999
Q ss_pred hhHHHHHHHH
Q 037064 102 NTSSLQVIAE 111 (187)
Q Consensus 102 NT~rL~eia~ 111 (187)
.+.|.+.+..
T Consensus 97 D~aK~ia~~~ 106 (376)
T cd08193 97 DVAKLVAVLA 106 (376)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 302
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=37.88 E-value=39 Score=30.11 Aligned_cols=40 Identities=5% Similarity=0.067 Sum_probs=31.5
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
+++-+|. .-.++-|+|...|+.+..+..+|.+.++|-...
T Consensus 48 ~~~C~~~--~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~ 87 (370)
T cd06389 48 NAFCSQF--SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITP 87 (370)
T ss_pred HHHHHHh--hcCcEEEEecCCHHHHHHHHHhhccCCCCeeee
Confidence 3444555 256888999999999999999999998885543
No 303
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=37.67 E-value=68 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=27.3
Q ss_pred cCCCEEEEEcCCCChh---hHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVGGWNSSN---TSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN---T~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.++|++|+.|+--... ....++.-++.+.|.|+|-.--|..
T Consensus 22 ~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~ 65 (188)
T cd07392 22 EEADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGNCDTP 65 (188)
T ss_pred cCCCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCCCCCH
Confidence 5799999999953322 2233355566778899997766653
No 304
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=37.33 E-value=59 Score=32.79 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhH-HHHHHHHH---hCCCeEEe
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTS-SLQVIAED---RGIPSYWI 120 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~-rL~eia~~---~g~~t~~I 120 (187)
..+++.+++.|-+..+|.+|||||-.|-.+. +|.+.... .+++...|
T Consensus 464 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgI 514 (745)
T TIGR02478 464 GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVI 514 (745)
T ss_pred hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEe
Confidence 4588999999988899999999999987655 56555332 34555544
No 305
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=37.32 E-value=78 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCChhh-----HHHHHHHHHhCCCeEEeCCCCC
Q 037064 88 KIDLILVVGGWNSSNT-----SSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT-----~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+|++|+.|+--+.+. ..+.+...+.++|.|.|-.--|
T Consensus 31 ~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD 73 (224)
T cd07388 31 GADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQD 73 (224)
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 5777777777666552 3333333344566666654444
No 306
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=36.74 E-value=1.8e+02 Score=29.13 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=33.8
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhC---CCeEEeC--CCCCCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRG---IPSYWID--SEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g---~~t~~Ie--~~~eL~ 127 (187)
...+.+++||++.|.-|+++++.|.+.= .-..||+ +++|.-
T Consensus 698 ~glk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vihidpsd~ee~s 743 (786)
T KOG2244|consen 698 PGLKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVIHIDPSDEEEFS 743 (786)
T ss_pred cCcceEEEECCCCChHHHHHHHHHHHhcCCcceEEEeCCCCHHHHH
Confidence 4689999999999999999999998853 3478998 666653
No 307
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=36.72 E-value=2.6e+02 Score=23.53 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.5
Q ss_pred EEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 154 TIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 154 ~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
..|+.+-+++|+.++.++.+.|.+.
T Consensus 257 ~~~~~~~~~~p~~~v~~l~~a~~e~ 281 (320)
T TIGR02122 257 PAALVTSSDVPEDLVYQITKAIFEN 281 (320)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHhC
Confidence 3588899999999999999998753
No 308
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=36.53 E-value=58 Score=29.50 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=39.5
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-----------------CCCEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-----------------KIDLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-----------------~~D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
.+.++||=|..+.--+.+ .+|..+ +-.++-|||+..|+-|..+..++...++|-
T Consensus 60 ~~~i~Dt~~~~~~a~~~a-~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~S~~s~ava~v~~~~~IP~ 130 (403)
T cd06361 60 GYEIYDTCSEVTTAMAAV-LRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGYSEISMAVSRMLNLQLIPQ 130 (403)
T ss_pred ceEEEeCCCChHHHHHHH-HHHHhhcccccccccccccCCCCCCCeEEEECCCcchHHHHHHHHhccCCcce
Confidence 566888866666555544 456532 025888999999999999999998888774
No 309
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=36.51 E-value=21 Score=29.42 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=20.7
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
++.+..|. .+|+++|-|| ||.+|.+.-++.
T Consensus 72 ~~~~~~l~--~ad~I~~~GG----~~~~~~~~l~~t 101 (210)
T cd03129 72 PDVVARLL--EADGIFVGGG----NQLRLLSVLRET 101 (210)
T ss_pred HHHHHHHh--hCCEEEEcCC----cHHHHHHHHHhC
Confidence 34444554 6999999997 777777666443
No 310
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.50 E-value=60 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=20.2
Q ss_pred hhcHHHHHH---HHHHHHhhhcCCCEEEEEcCCCC
Q 037064 69 TICHAAQER---QDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 69 TIC~AT~~R---Q~av~~La~~~~D~miVVGG~nS 100 (187)
.++..|..+ ++.+++++....|++|+.||---
T Consensus 36 ~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 36 LSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred EEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch
Confidence 344444444 44455555557999999999543
No 311
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.44 E-value=89 Score=27.42 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=9.9
Q ss_pred CCCEEEEEcCC
Q 037064 88 KIDLILVVGGW 98 (187)
Q Consensus 88 ~~D~miVVGG~ 98 (187)
++|++||+||-
T Consensus 39 ~~D~vi~lGGD 49 (264)
T PRK03501 39 NANIIVSIGGD 49 (264)
T ss_pred CccEEEEECCc
Confidence 68999999995
No 312
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.33 E-value=2.3e+02 Score=22.88 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=64.6
Q ss_pred EEEEEcCC--CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHH-HhhhcCCCEEEEEcCCCChhh
Q 037064 27 VGIANQTT--MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVY-KLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 27 v~vvsQTT--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~-~La~~~~D~miVVGG~nSSNT 103 (187)
||++--++ +.-.-|..+.+.+++...+ .| -.+.....=+.. +.|..+. .|....+|.+|+.+...+
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~--- 70 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKK-YG-----YNLILKFVSDED--EEEFELPSFLEDGKVDGIILLGGIST--- 70 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHH-cC-----CEEEEEeCCCCh--HHHHHHHHHHHHCCCCEEEEeCCCCh---
Confidence 55544332 3444567777767654332 22 112222111222 3344333 344468999999884322
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC-c--HHHHHHHHHHHHh
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST-P--DKAIEGVLKKVFE 177 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST-P--~~lI~eVi~~l~~ 177 (187)
.. ++.+.+.|+|..+++....-.....+...... +..... ..+..|.++|++..|... + ..-.+...+++.+
T Consensus 71 ~~-~~~l~~~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~-~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 146 (268)
T cd06277 71 EY-IKEIKELGIPFVLVDHYIPNEKADCVLTDNYSGAYAATE-YLIEKGHRKIGFVGDPLYSPSFEERYEGYKKALLD 146 (268)
T ss_pred HH-HHHHhhcCCCEEEEccCCCCCCCCEEEecchHHHHHHHH-HHHHCCCCcEEEECCCCCCcchHHHHHHHHHHHHH
Confidence 22 44556778999888764321111111101111 222211 222247889999865533 1 2233444555543
No 313
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=35.89 E-value=61 Score=31.49 Aligned_cols=38 Identities=39% Similarity=0.525 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
+.+-++|+|| -|-|..-|.-|+.-.|.|.|-|+.++--
T Consensus 442 ~~~rilvtGG-AS~N~~Ilq~iadVf~apVy~~~~~~sa 479 (545)
T KOG2531|consen 442 PPTRILVTGG-ASRNEAILQIIADVFGAPVYTIEGPNSA 479 (545)
T ss_pred CCceEEEecC-ccccHHHHHHHHHHhCCCeEeecCCchh
Confidence 6789999999 5899999999999999999999776644
No 314
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=35.88 E-value=32 Score=24.82 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcCCCEEEEEcCCCCh----hhHHHHHHHHHhCCCe
Q 037064 77 RQDAVYKLVEEKIDLILVVGGWNSS----NTSSLQVIAEDRGIPS 117 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG~nSS----NT~rL~eia~~~g~~t 117 (187)
|++....+..+++|++|+.-.+++. +...|...|.+.++|-
T Consensus 49 ~~~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~ 93 (95)
T PF02142_consen 49 RVQIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPL 93 (95)
T ss_dssp CHHHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHE
T ss_pred hhHHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCC
Confidence 5567777887899999999888776 6778899998888764
No 315
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.58 E-value=2e+02 Score=24.79 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=48.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
++|+++.+.+..- ......+++.+.+. |- ++.....+=..+.+=...+.+|.+...|++++.| +..+..
T Consensus 139 ~~v~ii~~~~~~g---~~~~~~~~~~~~~~-G~-----~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~--~~~~~~ 207 (347)
T cd06335 139 KKVALLLDNTGWG---RSNRKDLTAALAAR-GL-----KPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVG--NGPEGA 207 (347)
T ss_pred CeEEEEeccCchh---hhHHHHHHHHHHHc-CC-----eeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEe--cChHHH
Confidence 6888888887432 23333344333221 21 1110111111234445667777666799988877 567778
Q ss_pred HHHHHHHHhCCCeEEe
Q 037064 105 SLQVIAEDRGIPSYWI 120 (187)
Q Consensus 105 rL~eia~~~g~~t~~I 120 (187)
.+++-+++.|.+..++
T Consensus 208 ~~~~~~~~~g~~~~~~ 223 (347)
T cd06335 208 QIANGMAKLGWKVPII 223 (347)
T ss_pred HHHHHHHHcCCCCcEe
Confidence 8888888888754333
No 316
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=35.54 E-value=97 Score=26.98 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCe-EE-eCCCCCCCCCCcchhhhhchhh----hhhhc
Q 037064 73 AAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPS-YW-IDSEKRIGPGNKMAYKLMHGEL----VEKEN 146 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t-~~-Ie~~~eL~~~~~~~~~~~~~~~----~~~~~ 146 (187)
...+.++++++++...+|++|+.|...+ .-|.++|++. |.+ |. ++....-+..|.+....-..|. ..-..
T Consensus 46 ~~~~~~~~~~~~~~~g~dlIi~~g~~~~---~~~~~vA~~y-Pd~~F~~~d~~~~~~~~Nv~~~~f~~~e~~fLaG~~Aa 121 (306)
T PF02608_consen 46 TDADYEEAIRQLADQGYDLIIGHGFEYS---DALQEVAKEY-PDTKFIIIDGYIDAPEPNVISITFREEEASFLAGYLAA 121 (306)
T ss_dssp TCHHHHHHHHHHHHTT-SEEEEESGGGH---HHHHHHHTC--TTSEEEEESS---ST-TTEEEEEE-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEccHHHH---HHHHHHHHHC-CCCEEEEEecCcCCCCCcEEEEEccccchhHHHHHHHH
Confidence 5678899999999889999999998776 5777899887 554 33 3332222211222111100111 12222
Q ss_pred cccCCCcEEEEee---CCCCcHH
Q 037064 147 WLPKGQITIGVTA---GASTPDK 166 (187)
Q Consensus 147 wl~~~~~~IGITA---GASTP~~ 166 (187)
++ .....||..+ |...|..
T Consensus 122 ~~-tkt~~vg~ig~i~G~~~p~~ 143 (306)
T PF02608_consen 122 LM-TKTGKVGFIGDIGGMDIPPV 143 (306)
T ss_dssp HH-HSSTEEEEEEEEES--SCTT
T ss_pred HH-hccCcccccccccCCCcHhH
Confidence 23 2357899999 9888854
No 317
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=35.48 E-value=44 Score=29.71 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=40.5
Q ss_pred cccccch-----hcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNT-----ICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nT-----IC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.|| .|.....+.-+...+.. -.++.|||+..|+-+.-+..+|...++|-.
T Consensus 44 ~~~~~D~~~~~~~c~~~~~~~~~~~~~~~--~~v~aiiGp~~S~~~~~va~~a~~~~iP~I 102 (405)
T cd06385 44 QYVLGSSENKEGVCSDSAAPLVAVDLKFT--HNPWAFIGPGCDYTASPVARFTTHWDVPLV 102 (405)
T ss_pred EEEEccccccCCCCccccchHHHHHHHHh--cCCcEEECCCccchHHHHHHHHhccCCcEE
Confidence 4556676 78877777766644432 345778999999999999999999888754
No 318
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=35.29 E-value=67 Score=25.98 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=31.9
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP 128 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~ 128 (187)
.++|+||..|.=|.-=.+++.+.+.+.++|.+..-++.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~ 38 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDD 38 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCH
Confidence 37899999999998888888777888988988887764
No 319
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=35.27 E-value=70 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred CCCEEEEEcC----CCChhhH------HHHHHHHHhCCCeE
Q 037064 88 KIDLILVVGG----WNSSNTS------SLQVIAEDRGIPSY 118 (187)
Q Consensus 88 ~~D~miVVGG----~nSSNT~------rL~eia~~~g~~t~ 118 (187)
..|.+|++|| .+..... .+..+++..|+|.+
T Consensus 63 ~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 103 (286)
T PF04230_consen 63 NADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVI 103 (286)
T ss_pred cCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeE
Confidence 5799999999 3444443 34556666666544
No 320
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=35.23 E-value=2.5e+02 Score=26.15 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=36.4
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSEK 124 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~~ 124 (187)
.-||+....--+++.+.....+|-|+++||- | ++..+.++-.. .|.|....+..+
T Consensus 381 Egia~~~~~~~~~~~~~~g~~~~~i~~~GGg-a-~s~~w~Qi~Adv~g~pv~~~~~~e 436 (505)
T TIGR01314 381 EGVIYNLYTVALALVEVMGDPLNMIQATGGF-A-SSEVWRQMMSDIFEQEIVVPESYE 436 (505)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEecCc-c-cCHHHHHHHHHHcCCeeEecCCCC
Confidence 4477777666667766432358999999993 3 44667777666 467776666543
No 321
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=35.23 E-value=39 Score=29.96 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=71.4
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC-CCCCCC--CCc-chhhhh
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS-EKRIGP--GNK-MAYKLM 137 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~~--~~~-~~~~~~ 137 (187)
-++.+.|+=|...+--+.|-+ |.. +-.+-+|||...|+.+.....++.+.+++-+--.+ ...+.. .+. +-|...
T Consensus 52 velv~~D~~~dp~~a~~~A~~-li~-~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~ 129 (366)
T COG0683 52 VELVVEDDASDPATAAAVARK-LIT-QDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGP 129 (366)
T ss_pred EEEEEecCCCChHHHHHHHHH-HHh-hcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecC
Confidence 456788999998887777665 663 56688899999999999999999999876544332 222322 111 111111
Q ss_pred c--hhhhhhhcccc--CCC-cEEEEeeCCCCcHHHHHHHHHHHHhccH
Q 037064 138 H--GELVEKENWLP--KGQ-ITIGVTAGASTPDKAIEGVLKKVFEIKR 180 (187)
Q Consensus 138 ~--~~~~~~~~wl~--~~~-~~IGITAGASTP~~lI~eVi~~l~~~~~ 180 (187)
. .+.....+|+. .+. +.+-|....+=+..+.+.+...+.....
T Consensus 130 ~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~ 177 (366)
T COG0683 130 TDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGG 177 (366)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCC
Confidence 1 12223333331 123 3444556666677777777777776543
No 322
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=34.83 E-value=57 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=20.2
Q ss_pred CChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 99 NSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 99 nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
...|...|-++|+..+-..|+|++++||+
T Consensus 139 ~~~~~~~l~~ia~~~~g~~~~~~~~~~~~ 167 (170)
T cd01465 139 DNYNEDLMEAIADAGNGNTAYIDNLAEAR 167 (170)
T ss_pred CCcCHHHHHHHHhcCCceEEEeCCHHHHH
Confidence 55677777777765555677777777765
No 323
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=34.81 E-value=1.7e+02 Score=22.22 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhcC-CCEEEEEcCCC----ChhhHHHHHHHHHhCCC--eEEeCCC
Q 037064 72 HAAQERQDAVYKLVEEK-IDLILVVGGWN----SSNTSSLQVIAEDRGIP--SYWIDSE 123 (187)
Q Consensus 72 ~AT~~RQ~av~~La~~~-~D~miVVGG~n----SSNT~rL~eia~~~g~~--t~~Ie~~ 123 (187)
.....|-+++.+|.+.. ...+||-||.. -|...-..+.+.+.|++ ..++|..
T Consensus 17 ~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~ 75 (150)
T cd06259 17 PILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDR 75 (150)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCC
Confidence 67778988888888654 56677777753 46888888999888864 3555443
No 324
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=34.79 E-value=95 Score=23.89 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=42.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC--CCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHH
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR--IGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAI 168 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e--L~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI 168 (187)
.-+|+-..+..--..|.+.|++.|.+++.|.++.- +++ .....+||- =.|..+|
T Consensus 50 ~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~Tqi~~---------------------gt~Tvlaig---P~~~~~i 105 (115)
T cd02407 50 KKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRTQIPP---------------------GTPTVLAIG---PAPKEKV 105 (115)
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCcccCC---------------------CCceEEEEC---CCCHHHH
Confidence 45677776666677888888888999999998765 654 234455552 3478888
Q ss_pred HHHHHHH
Q 037064 169 EGVLKKV 175 (187)
Q Consensus 169 ~eVi~~l 175 (187)
+.+-..|
T Consensus 106 ~~itg~L 112 (115)
T cd02407 106 DKVTGHL 112 (115)
T ss_pred HHHcCcC
Confidence 8776554
No 325
>PLN02834 3-dehydroquinate synthase
Probab=34.65 E-value=2.2e+02 Score=26.72 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHH-HHhhhcCCC---EEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAV-YKLVEEKID---LILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av-~~La~~~~D---~miVVGG~nS 100 (187)
+|+.+|+-.++..--.+.+.+.|+.. |.+.....+.+.+--|+.+.+.=.++ ..+.+..+| ++|-|||=..
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~-----g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv 175 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAK-----GPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVI 175 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhc-----CCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHH
Confidence 68888887776554444555555431 10000000112233344454444433 334333456 9999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-.+.+.+...-.+|+|-..|-+-
T Consensus 176 ~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 176 GDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHhcCCCCEEEECCc
Confidence 99999877666778888888774
No 326
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=34.33 E-value=2.5e+02 Score=22.78 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=45.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchh--cHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI--CHAAQERQD-AVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI--C~AT~~RQ~-av~~La~~~~D~miVVGG~nSSN 102 (187)
+|+++.-. ++-.-|..+.+.+.....+. +. .....++. +..-..+|. .+..+.. ++|.+|+++. ++.-
T Consensus 1 ~ig~v~~~-~~~~~~~~~~~~i~~~~~~~-g~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~-~~~~ 71 (275)
T cd06307 1 RLGFLLPK-GSNAFYRELAAALEAAAAAF-PD-----ARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAP-DHPQ 71 (275)
T ss_pred CeEEEeCC-CCChHHHHHHHHHHHHHhhh-hc-----cCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCC-CcHH
Confidence 46666543 44456777777776532221 10 00111111 111223343 3344554 7999998764 3333
Q ss_pred hHHHHHHHHHhCCCeEEeCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~ 122 (187)
.....+.+.+.|+|...++.
T Consensus 72 ~~~~i~~~~~~~ipvV~~~~ 91 (275)
T cd06307 72 VRAAVARLAAAGVPVVTLVS 91 (275)
T ss_pred HHHHHHHHHHCCCcEEEEeC
Confidence 34555666678899887765
No 327
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=34.27 E-value=97 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=42.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHH
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEG 170 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~e 170 (187)
.=||+...+-.--..|.+.+++.|++.+.+ -|+++ .....+|| .=.|...|+.
T Consensus 56 ~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~---te~p~---------------------gt~T~Lai---gP~~~~~id~ 108 (116)
T cd02429 56 HKVVLEVPDEAALKNLSSKLTENSIKHKLW---IEQPE---------------------NIPTCIAL---KPYPKETVAS 108 (116)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCCeEEE---EEcCC---------------------CCceEEEe---CCCCHHHHHH
Confidence 447788777777888888899999998875 56654 23456666 4678888888
Q ss_pred HHHHH
Q 037064 171 VLKKV 175 (187)
Q Consensus 171 Vi~~l 175 (187)
+...|
T Consensus 109 it~~L 113 (116)
T cd02429 109 YLKKL 113 (116)
T ss_pred HhCCC
Confidence 76554
No 328
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.09 E-value=1.2e+02 Score=21.94 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.2
Q ss_pred CEEEEEcCCCChhhHHH
Q 037064 90 DLILVVGGWNSSNTSSL 106 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL 106 (187)
|..+|+||...++--..
T Consensus 80 ~~~ivvGG~~~t~~~~~ 96 (125)
T cd02065 80 DIPVVVGGAHPTADPEE 96 (125)
T ss_pred CCeEEEeCCcCCccccc
Confidence 89999999998876553
No 329
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=33.98 E-value=70 Score=24.57 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=30.2
Q ss_pred hcHHHHHH-HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 70 ICHAAQER-QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 70 IC~AT~~R-Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
+|.-..+. ++++++.+ ..+|++|..||---+-.-...+..++.+
T Consensus 38 ~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~~D~t~~a~~~~~ 82 (144)
T PF00994_consen 38 IVPDDPDAIKEALRRAL-DRADLVITTGGTGPGPDDVTPEALAEAG 82 (144)
T ss_dssp EEESSHHHHHHHHHHHH-HTTSEEEEESSSSSSTTCHHHHHHHHHS
T ss_pred EECCCHHHHHHHHHhhh-ccCCEEEEcCCcCcccCCcccHHHHHhc
Confidence 44444443 34444555 4789999999987777777777777775
No 330
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=33.80 E-value=1.5e+02 Score=26.36 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+|+.+|+-.+. +..+.+.+++.+.. . ...+..|+.+|.-..-+. .+..+.+..+|++|-|||-..-.+.
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~-~-----~~~~~~~~~~p~~~~v~~-~~~~~~~~~~D~iIavGGGs~~D~a 92 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAA-G-----EAFVLRYDGECSEENIER-LAAQAKENGADVIIGIGGGKVLDTA 92 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhc-C-----eEEEEEeCCCCCHHHHHH-HHHHHHhcCCCEEEEeCCcHHHHHH
Confidence 46777775443 23344445443311 1 122334555533222222 2223323479999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
|.+.... ++|-+.|-+-
T Consensus 93 K~ia~~~--~~p~i~VPTT 109 (347)
T cd08172 93 KAVADRL--GVPVITVPTL 109 (347)
T ss_pred HHHHHHh--CCCEEEecCc
Confidence 9877663 6777777654
No 331
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.62 E-value=54 Score=29.43 Aligned_cols=92 Identities=8% Similarity=0.058 Sum_probs=51.4
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcc--hhhh-hchhhhhhhccccCCCcEEE
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKM--AYKL-MHGELVEKENWLPKGQITIG 156 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~--~~~~-~~~~~~~~~~wl~~~~~~IG 156 (187)
++-+|.. -.++-|+|...|+.+..+..+|.+.++|-.-..... ...... .=.+ ..+-.......| +.++++
T Consensus 55 ~~C~~~~--~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~--~~~~~f~i~~~p~~~~a~~~~i~~~--~wk~va 128 (371)
T cd06388 55 AFCSQYS--RGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPT--EGESQFVLQLRPSLRGALLSLLDHY--EWNRFV 128 (371)
T ss_pred HHHHHHh--CCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccc--cCCCceEEEeChhhhhHHHHHHHhc--CceEEE
Confidence 4445552 467888999999999999999999998854332211 110000 0000 111122333444 567788
Q ss_pred EeeCCCCcHHHHHHHHHHHHh
Q 037064 157 VTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 157 ITAGASTP~~lI~eVi~~l~~ 177 (187)
|---.+..-...+.+.+....
T Consensus 129 iiYd~~~~~~~lq~l~~~~~~ 149 (371)
T cd06388 129 FLYDTDRGYSILQAIMEKAGQ 149 (371)
T ss_pred EEecCCccHHHHHHHHHhhHh
Confidence 877544444555555555443
No 332
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=33.36 E-value=1.2e+02 Score=27.49 Aligned_cols=116 Identities=6% Similarity=-0.005 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
..+.+++=-=.|... .+.++++ .+.++|.-|+=.+.=+..++++++ +=--+|.+|.++=.-..
T Consensus 67 ~~~VIfsAHGVs~~v----~~~a~~r------------~l~v~DATCPlVtKvh~~v~~~~~-~G~~iIliG~~gHpEv~ 129 (294)
T COG0761 67 GATVIFSAHGVSPAV----REEAKER------------GLKVIDATCPLVTKVHKEVERYAR-EGYEIILIGHKGHPEVI 129 (294)
T ss_pred CCEEEEECCCCCHHH----HHHHHHC------------CCEEEecCCCcchHHHHHHHHHHh-CCCEEEEEccCCCCcee
Confidence 346677665555443 3334442 467899999999999999999984 66677888876543221
Q ss_pred HHHHHHHHhCC-CeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 105 SLQVIAEDRGI-PSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 105 rL~eia~~~g~-~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
-..- +... ..|.+|+++|+... -+ ...+++++.+=+-=.-+-..+|+++|..-
T Consensus 130 Gt~G---q~~~~~~~lve~~~d~~~l-----------------~~-~~~~~l~~~tQTTls~ddt~~Iv~~l~~r 183 (294)
T COG0761 130 GTMG---QYPEGGVLLVESVEDVANL-----------------KV-QLPDKLAFVTQTTLSVDDTAEIVAALKER 183 (294)
T ss_pred eecc---ccCCCceEEEecHHHHHhc-----------------cc-CCcccEEEEeeeecCHHHHHHHHHHHHHh
Confidence 1110 2222 38999999999641 11 13347888888877777788899888753
No 333
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=33.29 E-value=1.2e+02 Score=22.78 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCCEEEEEcC--CCChhhHHHHHHHHHhCCCeEEeCCCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGG--WNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG--~nSSNT~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
+++..|. ..---+|++|+ ..+.-...|.+++++.|.|.+.--....+
T Consensus 3 ~~~~~L~-~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~ 51 (137)
T PF00205_consen 3 EAADLLS-SAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGV 51 (137)
T ss_dssp HHHHHHH-H-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTS
T ss_pred HHHHHHH-hCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccc
Confidence 3445554 45566777776 45578899999999999988765555544
No 334
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=33.20 E-value=1.3e+02 Score=23.77 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.|...|-+||+.-|=..|++++++
T Consensus 145 ~~~~~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 145 VRRGLAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred cCccHHHHHHHHcCCeEEEcCcCC
Confidence 345555566655555555555544
No 335
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=33.20 E-value=77 Score=25.57 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=31.1
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.++|+||..|.=|.-=..++.+.+.+.++|.+..-.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~ 39 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD 39 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh
Confidence 5899999999999988888888777888888876544
No 336
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=33.19 E-value=1.8e+02 Score=20.80 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=45.4
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEE-EcCCCChhhHHHHHHHHHhC---CCeEEeCCCCCCCCCCcchhhhhch
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILV-VGGWNSSNTSSLQVIAEDRG---IPSYWIDSEKRIGPGNKMAYKLMHG 139 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miV-VGG~nSSNT~rL~eia~~~g---~~t~~Ie~~~eL~~~~~~~~~~~~~ 139 (187)
+.++.+.|..-+.-...+.+|++.--++.++ |-+-.+. ...++|++.+ .|++.+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~---~~~~l~~~~~V~~~Pt~~~------------------- 77 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND---STMELCRREKIIEVPHFLF------------------- 77 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh---HHHHHHHHcCCCcCCEEEE-------------------
Confidence 3467899999888888999998532232222 3222222 2335666655 355433
Q ss_pred hhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHH
Q 037064 140 ELVEKENWLPKGQITIGVTAGASTPDKAIEGVLK 173 (187)
Q Consensus 140 ~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~ 173 (187)
+ .+-+.++-..|+. |..+.+.|..
T Consensus 78 --------~-~~G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 78 --------Y-KDGEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred --------E-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence 2 2334577778854 7777777654
No 337
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=33.16 E-value=99 Score=26.08 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=59.7
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC-CCCCCC--CCCcchhhhhc
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID-SEKRIG--PGNKMAYKLMH 138 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie-~~~eL~--~~~~~~~~~~~ 138 (187)
++...|+-|.+... ++++++|... .+| .|||+..|+++..+..++++.++|..... +...+. ....+-+....
T Consensus 43 ~l~~~D~~~d~~~~-~~~~~~l~~~~~v~--avig~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~ 119 (336)
T cd06326 43 ELVTLDDGYEPERT-VANTRKLIEDDKVF--ALFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRAS 119 (336)
T ss_pred EEEEeCCCCChHHH-HHHHHHHHhhcCcE--EEEeCCCchhHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCC
Confidence 45567776666654 4567777742 455 55666667777788899988888877653 222221 11101001111
Q ss_pred --hhhhhhhcccc-CCCcEEEEeeCCCC-cHHHHHHHHHHHHh
Q 037064 139 --GELVEKENWLP-KGQITIGVTAGAST-PDKAIEGVLKKVFE 177 (187)
Q Consensus 139 --~~~~~~~~wl~-~~~~~IGITAGAST-P~~lI~eVi~~l~~ 177 (187)
.+...-.+|+. .+.++|++....+. .....+.+.+.+.+
T Consensus 120 ~~~~~~~~~~~l~~~g~~~v~~l~~~~~~~~~~~~~~~~~~~~ 162 (336)
T cd06326 120 YADEIAAIVRHLVTLGLKRIAVFYQDDAFGKDGLAGVEKALAA 162 (336)
T ss_pred hHHHHHHHHHHHHHhCCceEEEEEecCcchHHHHHHHHHHHHH
Confidence 11122223331 36788998866442 24444545555544
No 338
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=33.12 E-value=40 Score=25.52 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=17.8
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCCh-hhH
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSS-NTS 104 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSS-NT~ 104 (187)
..++.++. .++|++|+||..-+- ||.
T Consensus 68 ~~~~~~~l-~~aDlvl~iG~~~~~~~~~ 94 (137)
T PF00205_consen 68 SPAANEAL-EQADLVLAIGTRLSDFNTY 94 (137)
T ss_dssp CHHHHHHH-HHSSEEEEESSSSSTTTTT
T ss_pred CHHHHHHh-cCCCEEEEECCCCcccccc
Confidence 34455555 379999999987655 443
No 339
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=33.11 E-value=38 Score=26.47 Aligned_cols=93 Identities=16% Similarity=0.333 Sum_probs=52.9
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC-CCCCCCCCcchhh---h-hchhh---------hh
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS-EKRIGPGNKMAYK---L-MHGEL---------VE 143 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~~~~~~~~~---~-~~~~~---------~~ 143 (187)
.+++++++. ....||+.||- |.......++.++.| .++|+.. ++.|-. .+.+. | +.+.. ..
T Consensus 52 ~~~l~~l~~-~~~~VIa~GGG-~~~~~~~~~~L~~~g-~vI~L~~~~~~l~~--Rl~~~~~Rp~l~~~~~~~~~~~~~~~ 126 (158)
T PF01202_consen 52 SEALRELLK-ENNCVIACGGG-IVLKEENRELLKENG-LVIYLDADPEELAE--RLRARDNRPLLKGKMEHEEILELLFE 126 (158)
T ss_dssp HHHHHHHHC-SSSEEEEE-TT-GGGSHHHHHHHHHHS-EEEEEE--HHHHHH--HHHHHCTSGGTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cCcEEEeCCCC-CcCcHHHHHHHHhCC-EEEEEeCCHHHHHH--HHhCCCCCCCCCCCChHHHHHHHHHH
Confidence 456677773 55888888775 566666777776676 4666643 333321 11111 1 01100 12
Q ss_pred hhccccCCCcEEEEeeCCCCcHHHHHHHHHHHH
Q 037064 144 KENWLPKGQITIGVTAGASTPDKAIEGVLKKVF 176 (187)
Q Consensus 144 ~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~ 176 (187)
...++ .....+=|....++|+.+++++++.|.
T Consensus 127 R~~~Y-~~~a~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 127 REPLY-EQAADIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHHH-HHHSSEEEETSSCHHHHHHHHHHHHH-
T ss_pred HHHHH-HhcCeEEEeCCCCCHHHHHHHHHHHhC
Confidence 33334 234556688999999999999998873
No 340
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.10 E-value=54 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCCCCCC------CCCeEEEEEcCCCChHHHHHHHHHHHHHHhh
Q 037064 16 KGFDPDI------DLVKVGIANQTTMIKGETEEIGKLVEKTMMR 53 (187)
Q Consensus 16 ~~~~~~~------~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~ 53 (187)
.-|||.+ .+++||||+ .-.-.-+.+|+..+++++|.
T Consensus 121 GlFd~~~KkpLP~~p~~IGVIT--S~tgAairDIl~~~~rR~P~ 162 (440)
T COG1570 121 GLFDPERKKPLPFFPKKIGVIT--SPTGAALRDILHTLSRRFPS 162 (440)
T ss_pred CCcChhhcCCCCCCCCeEEEEc--CCchHHHHHHHHHHHhhCCC
Confidence 4466665 346899984 34455678888888876553
No 341
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=32.85 E-value=41 Score=26.22 Aligned_cols=98 Identities=11% Similarity=0.198 Sum_probs=65.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccc-ccchhcHH-----HHHHHHHHHHhhhcCCCEEEE-
Q 037064 22 IDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFI-SFNTICHA-----AQERQDAVYKLVEEKIDLILV- 94 (187)
Q Consensus 22 ~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~nTIC~A-----T~~RQ~av~~La~~~~D~miV- 94 (187)
++..+|.+++..+..+...+.....+...+..- ...+. ..+.++.. |.-==+-+.++....+-+.||
T Consensus 3 ~~~~~v~~~~s~~~~i~~~qdalDLi~~~~~~~------~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~iklAivG 76 (113)
T PF13788_consen 3 KNGIRVAEVSSDEPLISDEQDALDLIGTAYEHG------ADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRIKLAIVG 76 (113)
T ss_pred CCCeEEEEEeCCCCeecchhHHHHHHHHHHHcC------CCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhceeEEEEE
Confidence 455789999999999999899988887643221 11111 12233332 222234566777778888888
Q ss_pred -EcCCCChhhHHHHHHHHHhC--CCeEEeCCCCCCC
Q 037064 95 -VGGWNSSNTSSLQVIAEDRG--IPSYWIDSEKRIG 127 (187)
Q Consensus 95 -VGG~nSSNT~rL~eia~~~g--~~t~~Ie~~~eL~ 127 (187)
+.++ +.+++|-+...+.+ ...|++.+.++..
T Consensus 77 D~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~eA~ 110 (113)
T PF13788_consen 77 DFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEEAI 110 (113)
T ss_pred ccccc--ccchhHHHHHHHhcCCCeEEEECCHHHHH
Confidence 6666 57889999988854 5688998888764
No 342
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=32.83 E-value=88 Score=24.05 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=21.6
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeE
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~ 118 (187)
.+=|++|++-. =||.|.-..++.|+++|.++.
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Confidence 47899998865 677888888888888765443
No 343
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=32.66 E-value=2.1e+02 Score=27.45 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC--CCCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS--EKRIGP 128 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~--~~eL~~ 128 (187)
++|++|-|||=....+.+.+...-.+|+|-.+|-+ ...+|.
T Consensus 269 r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTTllA~vDs 311 (542)
T PRK14021 269 RSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTSLLAMVDA 311 (542)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCChHHhhhcc
Confidence 59999999999999999998877788999999888 455553
No 344
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=32.64 E-value=1.4e+02 Score=28.70 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=74.1
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCC-cchhhhhchhhh
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGN-KMAYKLMHGELV 142 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~-~~~~~~~~~~~~ 142 (187)
+.+.|+-|+-...=|..+++++ ++--.+|++|-++=.-+.-+.-.| + +.+.|++.+|+.... -|.+..+.|+..
T Consensus 201 ~~IVDaTCP~V~KV~~~v~k~~-k~gy~iII~Gk~~HpEv~gt~s~a---~-~~~VV~~~~ea~~v~~yi~~~~~~~~~~ 275 (460)
T PLN02821 201 VQIVDTTCPWVSKVWNTVEKHK-KKDYTSVIHGKYAHEETVATASFA---G-KYIIVKNMKEATYVCDYILGGQLDGSSG 275 (460)
T ss_pred CeEEecCCcchHHHHHHHHHHH-hCCCEEEEECCCCCcceeeccccc---C-CeEEECCHHHHHHHhhhccccccccccc
Confidence 5678999999999999999998 477889999999888888777666 2 467888888876200 000000000000
Q ss_pred hhhc-----------cccC--CCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 143 EKEN-----------WLPK--GQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 143 ~~~~-----------wl~~--~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
..+. -|+. .-.+|||.+=+==+..-.+++++.|+.
T Consensus 276 ~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~l~~ 323 (460)
T PLN02821 276 TKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKLLEK 323 (460)
T ss_pred chhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHHHHH
Confidence 0011 1210 126799999998899999999998865
No 345
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=32.37 E-value=2.7e+02 Score=22.40 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=57.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
|+++.- .++-.-|..+...+++...+ .| -++.+++ +....+.| +.++.+....+|.+|+.+.... .+
T Consensus 2 I~vi~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~--~~- 69 (265)
T cd06291 2 IGLIVP-TISNPFFSELARAVEKELYK-KG-----YKLILCN--SDNDPEKEREYLEMLRQNQVDGIIAGTHNLG--IE- 69 (265)
T ss_pred EEEEEC-CCCChhHHHHHHHHHHHHHH-CC-----CeEEEec--CCccHHHHHHHHHHHHHcCCCEEEEecCCcC--HH-
Confidence 444442 23444577777777653322 22 1222221 12122333 3344555457999999875322 22
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
-+.+.|.|..++++... +....+...... ++.. -...+..|..+||+..|..
T Consensus 70 ---~~~~~gipvv~~~~~~~-~~~~~V~~d~~~~g~~~-~~~l~~~g~~~i~~i~~~~ 122 (265)
T cd06291 70 ---EYENIDLPIVSFDRYLS-ENIPIVSSDNYEGGRLA-AEELIERGCKHIAHIGGPN 122 (265)
T ss_pred ---HHhcCCCCEEEEeCCCC-CCCCeEeechHHHHHHH-HHHHHHcCCcEEEEEccCc
Confidence 23467899999988643 111111111111 1221 1122224778999887744
No 346
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=32.26 E-value=79 Score=29.21 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=37.2
Q ss_pred ccccchhcHHHHHHHHHHHHhhhc------------CCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 64 FISFNTICHAAQERQDAVYKLVEE------------KIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~------------~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
+.++||=|..... ..++..|..+ .-.++.||||..|+-|..++.++...++|-.
T Consensus 66 ~~i~dtc~~~~~a-~~~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s~~va~i~~~~~IP~I 131 (469)
T cd06365 66 FHIYNVLHSDRKA-LESSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALSATIATLLGLYKFPQL 131 (469)
T ss_pred EEEECCCCccHHH-HHHHHHHHhCCCcccCCccCCCCCceEEEEcCCccHHHHHHHHHhhhhcccce
Confidence 4567775544433 3333344422 1357899999999999999999999988743
No 347
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.16 E-value=77 Score=30.62 Aligned_cols=90 Identities=11% Similarity=0.200 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhcCCCEE--EEEcCCCChhh----HHHHHHHHHhCCCeEEeCCC-C-CCCCCCcchhhhhchhhhhh
Q 037064 73 AAQERQDAVYKLVEEKIDLI--LVVGGWNSSNT----SSLQVIAEDRGIPSYWIDSE-K-RIGPGNKMAYKLMHGELVEK 144 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~m--iVVGG~nSSNT----~rL~eia~~~g~~t~~Ie~~-~-eL~~~~~~~~~~~~~~~~~~ 144 (187)
++..|=+.++++. +.+|-+ +|.||--++=. ..+++.+.+. .+.|.-... + .|+. ...
T Consensus 119 q~~~rl~~l~~~g-~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a-~~~~~~~~~~~~~~~~-------------~~~ 183 (522)
T TIGR01211 119 QVTARLEQLEQIG-HPVDKVELIIMGGTFPARDLDYQEWFIKRCLNA-MNGFDQELKGNSTLEE-------------AIR 183 (522)
T ss_pred HHHHHHHHHHHhC-CCCceEEEEEECCCcccCCHHHHHHHHHHHHHH-hccccccccccchHHH-------------HHH
Confidence 5567778888876 578877 89999666533 3444445443 222211100 0 0110 111
Q ss_pred hccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhcc
Q 037064 145 ENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIK 179 (187)
Q Consensus 145 ~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~~ 179 (187)
.+-- .....||||-++ -|+++-++.++.|.+++
T Consensus 184 ~ne~-a~~~~vgitiEt-RPD~i~~e~L~~L~~~G 216 (522)
T TIGR01211 184 INET-SKHRCVGLTIET-RPDYCREEHIDRMLKLG 216 (522)
T ss_pred hhhc-ccCCeEEEEEEE-cCCcCCHHHHHHHHHcC
Confidence 1222 356789999977 89999999999998753
No 348
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.15 E-value=1.3e+02 Score=24.59 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=26.5
Q ss_pred EEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 93 LVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 93 iVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
|+|=+..+.|...+++..++.|...-.+.+.++|+
T Consensus 2 i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~ 36 (205)
T PRK13141 2 IAIIDYGMGNLRSVEKALERLGAEAVITSDPEEIL 36 (205)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhc
Confidence 44445557899999999999998877777666553
No 349
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.13 E-value=2.9e+02 Score=22.85 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=38.4
Q ss_pred hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCC-CCcchhhhhchhhhhhhccccCCCcEEEEeeCC
Q 037064 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP-GNKMAYKLMHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~-~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
...+|.+|+++... +.. +++-..+.++|...|+...+-.. ...+......+-.......+..|.++||+-+|.
T Consensus 54 ~~~vdgiIi~~~~~--~~~-~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 127 (269)
T cd06287 54 ALDIDGAILVEPMA--DDP-QVARLRQRGIPVVSIGRPPGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALIVGS 127 (269)
T ss_pred ccCcCeEEEecCCC--CCH-HHHHHHHcCCCEEEeCCCCCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 35899999987543 333 34445567889999976432110 111111111111112233343578899998764
No 350
>PRK09330 cell division protein FtsZ; Validated
Probab=32.11 E-value=1.4e+02 Score=27.82 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 77 RQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
=.+.+++.. ..+|.++|+ ||.-|.=+--++++|++.|..++-|=+
T Consensus 87 ~~e~I~~~l-~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt 135 (384)
T PRK09330 87 SREEIREAL-EGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVT 135 (384)
T ss_pred HHHHHHHHH-cCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 345667777 479999998 567788888999999999987765544
No 351
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=32.03 E-value=3e+02 Score=25.12 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=37.3
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSE 123 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~ 123 (187)
.-||+....--+.+++......+-|+|+||- |++..+.++-.. .|.|.+..+..
T Consensus 370 Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~--s~s~~~~Q~~Adv~g~pv~~~~~~ 424 (481)
T TIGR01312 370 EGVTFALRDSLDILREAGGIPIQSIRLIGGG--AKSPAWRQMLADIFGTPVDVPEGE 424 (481)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeccc--cCCHHHHHHHHHHhCCceeecCCC
Confidence 4488888887777777531357889999995 455666666555 47888777643
No 352
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=31.93 E-value=2.9e+02 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC--CCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE--KRIGP 128 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~--~eL~~ 128 (187)
+.|++|-|||=.+-.+.+.+.....+|+|-..|-+- +++|.
T Consensus 111 r~d~IIaiGGGsv~D~ak~iA~~~~rgip~I~IPTTlla~vda 153 (389)
T PRK06203 111 RHSYVLAIGGGAVLDMVGYAAATAHRGVRLIRIPTTVLAQNDS 153 (389)
T ss_pred CCceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCCccccCC
Confidence 345999999999999999887766678888888876 66654
No 353
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=31.72 E-value=71 Score=26.87 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=33.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP 128 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~ 128 (187)
.++|.||-.|.-++.==.++.+.+.+.++|-+....|.
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~D~ 39 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQVLYVATGRAFDD 39 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhhCCceEEEEecCCCCH
Confidence 47999999999999988888888888899999988864
No 354
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=31.67 E-value=3.4e+02 Score=23.44 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=47.5
Q ss_pred HhhhcCCCEEEEEcCC--CChhhHHHHHHHHHhCCCeE-EeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEee
Q 037064 83 KLVEEKIDLILVVGGW--NSSNTSSLQVIAEDRGIPSY-WIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTA 159 (187)
Q Consensus 83 ~La~~~~D~miVVGG~--nSSNT~rL~eia~~~g~~t~-~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITA 159 (187)
+++....|+++|=|.. ...|+..|++..++...|.+ +..+.+.|.+.. +++ -+=.-=
T Consensus 27 ~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~a---------------Da~-----l~~svl 86 (232)
T PRK04169 27 AICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGISPGA---------------DAY-----LFPSVL 86 (232)
T ss_pred HHHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCccccCcCC---------------CEE-----EEEEEe
Confidence 3444468998765544 45789999999988667754 677777775421 221 111112
Q ss_pred CCCCcHHHHHHHHHHHHhc
Q 037064 160 GASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 160 GASTP~~lI~eVi~~l~~~ 178 (187)
-+.-|+|+|..=+..+..+
T Consensus 87 Ns~~~~~iig~~~~~~~~~ 105 (232)
T PRK04169 87 NSRNPYWIIGAHVEAAPII 105 (232)
T ss_pred cCCCcchHhhHHHHHHHHH
Confidence 4668999998866665543
No 355
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=31.65 E-value=43 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=14.1
Q ss_pred HhhhcCCCEEEEEcCCCChhhHHH
Q 037064 83 KLVEEKIDLILVVGGWNSSNTSSL 106 (187)
Q Consensus 83 ~La~~~~D~miVVGG~nSSNT~rL 106 (187)
.+. .+|++|+-||++..-..+|
T Consensus 37 ~l~--~~D~lilPGG~~~~~~~~L 58 (198)
T cd03130 37 ELP--DADGLYLGGGYPELFAEEL 58 (198)
T ss_pred CCC--CCCEEEECCCchHHHHHHH
Confidence 454 3999999998655333343
No 356
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=31.56 E-value=87 Score=31.63 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
...|+.+++.|.+..+|.+|||||--|-.+..
T Consensus 80 ~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~ 111 (745)
T TIGR02478 80 RPGRLKAARNLIKRGIDNLVVIGGDGSLTGAD 111 (745)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECChhHHHHHH
Confidence 45788999999888999999999999987765
No 357
>PRK00047 glpK glycerol kinase; Provisional
Probab=31.46 E-value=2.6e+02 Score=26.02 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=37.8
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSEK 124 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~~ 124 (187)
.-||+....--+.+++.....++-+.++||- |++..+.++-.. .|.|....+..+
T Consensus 383 Egia~~~r~~~e~l~~~~g~~~~~i~~~GGg--a~s~~w~Qi~ADvlg~pV~~~~~~e 438 (498)
T PRK00047 383 ESIAYQTRDVLDAMQADSGIRLKELRVDGGA--VANNFLMQFQADILGVPVERPVVAE 438 (498)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEecCc--ccCHHHHHHHHHhhCCeeEecCccc
Confidence 4488887777777775422368899999994 566667777655 577887666543
No 358
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=31.43 E-value=3.5e+02 Score=24.01 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 89 IDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 89 ~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.|++|-|||=..-.+.+.+...-.+|+|-+.|-+-
T Consensus 86 ~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTT 120 (345)
T cd08195 86 KSLIIALGGGVVGDLAGFVAATYMRGIDFIQIPTT 120 (345)
T ss_pred CCeEEEECChHHHhHHHHHHHHHhcCCCeEEcchh
Confidence 39999999999999999887666778888888774
No 359
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.39 E-value=1.2e+02 Score=26.88 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=12.4
Q ss_pred HHhhhcCCCEEEEEcCC
Q 037064 82 YKLVEEKIDLILVVGGW 98 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~ 98 (187)
.++. ..+|++||+||-
T Consensus 59 ~~~~-~~~Dlvi~iGGD 74 (287)
T PRK14077 59 DELF-KISDFLISLGGD 74 (287)
T ss_pred hhcc-cCCCEEEEECCC
Confidence 3454 379999999995
No 360
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=31.15 E-value=2.1e+02 Score=25.18 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=41.7
Q ss_pred hhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCC
Q 037064 84 LVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
+...+.|++||||..+..| =...+.|.|.|...+.+..+. .++ +... + .....
T Consensus 44 ~~~~~pD~vVvi~~dH~~~-------f~~~~~P~f~i~~~~~~~~~~---------------~~~--g~~~--~-~~~~g 96 (277)
T cd07364 44 IKKNKPDVAIIVYNDHASA-------FDLDIIPTFAIGTAEEFQPAD---------------EGY--GPRP--V-PDVQG 96 (277)
T ss_pred HHHhCCCEEEEEcCchHHh-------hcccCCCceEEeeccccccCc---------------ccc--CCCC--C-CCCCC
Confidence 3334799999999999533 223457899999988876421 223 1100 1 14556
Q ss_pred cHHHHHHHHHHHHh
Q 037064 164 PDKAIEGVLKKVFE 177 (187)
Q Consensus 164 P~~lI~eVi~~l~~ 177 (187)
...+-+++++.+.+
T Consensus 97 ~~~LA~~i~~~~~~ 110 (277)
T cd07364 97 HPDLAWHIAQSLIL 110 (277)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777777754
No 361
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=30.90 E-value=1.4e+02 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+.|+++++| +.|.+.+ |+..++..|+|.++.+..
T Consensus 84 ~kPdivi~~~-~~~~~~~-~a~~a~~~~ip~i~~~~~ 118 (380)
T PRK00025 84 EPPDVFIGID-APDFNLR-LEKKLRKAGIPTIHYVSP 118 (380)
T ss_pred cCCCEEEEeC-CCCCCHH-HHHHHHHCCCCEEEEeCC
Confidence 3689999998 6667765 556677778887766554
No 362
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=30.83 E-value=1.8e+02 Score=26.50 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchh---cHHHHHHHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CHAAQERQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+...+... -++.+.+.|++. + .++.+|+.+ |.-.. =++++..+...++|++|-|||=.+
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~-----g-----i~~~~f~~v~~~p~~~~-v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRR-----G-----VETEVFSDVEPDPSLET-VRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHC-----C-----CeEEEecCCCCCcCHHH-HHHHHHHHHhcCCCEEEEeCCccH
Confidence 58888875443322 455666666541 1 122233322 22111 122333343457999999999999
Q ss_pred hhhHHHHHHH
Q 037064 101 SNTSSLQVIA 110 (187)
Q Consensus 101 SNT~rL~eia 110 (187)
-.+.|.+.+.
T Consensus 91 iD~AK~iA~~ 100 (398)
T cd08178 91 MDAAKIMWLF 100 (398)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 363
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=30.64 E-value=1.4e+02 Score=27.86 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=35.4
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSEK 124 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~~ 124 (187)
.-||+....--+.+++......+-|+++||---|+ .+.++-.. .|.|.+..+..+
T Consensus 386 Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~--~w~Qi~Adv~g~pV~~~~~~e 441 (504)
T PTZ00294 386 EAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNK--LLMQFQADILGKDIVVPEMAE 441 (504)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcceEEEecccccCH--HHHHHHHHHhCCceEecCccc
Confidence 34788777766777664223588999999876444 45555444 677887666443
No 364
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.60 E-value=1.2e+02 Score=21.92 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
.+-|++|++.- .++..+.++++.|+++|.+.+.|.+-.+-
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 36788888864 35678889999999999999999987654
No 365
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=30.57 E-value=1.2e+02 Score=24.56 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=18.4
Q ss_pred CCCEEEEEcCCCChhh----HHHHHHHHHhCCCeEEeCCCCCC
Q 037064 88 KIDLILVVGGWNSSNT----SSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT----~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
++|++|+.|+--+.-. ..+.++-++.++|.|+|-.--|.
T Consensus 40 ~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 82 (240)
T cd07402 40 RPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNHDD 82 (240)
T ss_pred CCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCCCC
Confidence 4666666666332211 23444444445555655444443
No 366
>PF13941 MutL: MutL protein
Probab=30.46 E-value=45 Score=31.80 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=37.0
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
.++..++++.-.++| +++|..-+.|.++..||-+..|...+.+.|+..+
T Consensus 102 A~V~~v~s~~l~~~~--l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La 150 (457)
T PF13941_consen 102 ARVLQVYSYELTEED--LEEIREIRPDIILLAGGTDGGNKEVILHNAEMLA 150 (457)
T ss_pred cEEEEEeccCCCHHH--HHHHhccCCCEEEEeCCccCCchHHHHHHHHHHH
Confidence 456788888655555 3334444799999999999999999998887754
No 367
>PRK05665 amidotransferase; Provisional
Probab=30.38 E-value=68 Score=27.49 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=14.1
Q ss_pred CCCEEEEEcCCCChhh
Q 037064 88 KIDLILVVGGWNSSNT 103 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT 103 (187)
.+|.+||-||++|.+-
T Consensus 57 ~~dgiiitGs~~~v~~ 72 (240)
T PRK05665 57 KFDAYLVTGSKADSFG 72 (240)
T ss_pred cCCEEEECCCCCCccc
Confidence 5999999999999764
No 368
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=30.37 E-value=1.7e+02 Score=20.69 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP 128 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~ 128 (187)
..+-++|+.|.+-...-.-.-+|...+.|-+++. +.+++
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~--~~l~~ 62 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAAKNNAPILLVN--NSLPS 62 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC--CCCCH
Confidence 6899999999999998888889988888999888 77764
No 369
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.30 E-value=92 Score=29.22 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=33.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH-HHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEE
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEK-TMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLIL 93 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~mi 93 (187)
-+.++|=-|.....-..+.+.|.. +..++. .+...+.=+=|+|+...++.+. .. ..+|+++
T Consensus 62 DiviiNTC~v~~~a~~k~~~~i~~~~~~k~~-----~p~~~ivvgGc~a~~~~~~~l~-~~-~~vD~vv 123 (467)
T PRK14329 62 DLVLVNTCSIRDNAEQKVRKRLEKFNALKKK-----NPKLIVGVLGCMAERLKDKLLE-EE-KIVDLVV 123 (467)
T ss_pred CEEEEeCcceechHHHHHHHHHHHHHHHHhh-----CCCcEEEEECChhcCcHHHHHh-cC-CCceEEE
Confidence 577888777776666666666632 101111 2234455667888877665443 22 2366554
No 370
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=30.13 E-value=2.8e+02 Score=24.85 Aligned_cols=90 Identities=11% Similarity=0.068 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhh---hcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLV---EEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La---~~~~D~miVVGG~nS 100 (187)
+++.+++-.+....-.+.+.+.|+.. .+ ..-+.+.+.-++.|.+.=+. +..+. ..++|++|.|||=..
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~----~~----~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv 95 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKI----LP----VHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGAT 95 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhh----cC----ceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHH
Confidence 57888877666555555555555431 11 00111122223222222221 22222 135999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEeCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~ 122 (187)
-.+.+.+.....+|+|-..|-+
T Consensus 96 ~D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 96 GDVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHHhccCCcEEEecC
Confidence 9999987765567888888877
No 371
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.12 E-value=1.5e+02 Score=27.07 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC-CCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS-EKRIG 127 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~ 127 (187)
++|++|+||+.-++.+..-. + ...+.+.+||+. +.++.
T Consensus 274 ~aDlvl~lG~~~~~~~~~~~-~-~~~~~~~i~vd~d~~~~~ 312 (432)
T TIGR00173 274 QPDLVIRFGGPPVSKRLRQW-L-ARQPAEYWVVDPDPGWLD 312 (432)
T ss_pred CCCEEEEeCCCcchhHHHHH-H-hCCCCcEEEECCCCCccC
Confidence 59999999998765543322 2 123456899974 45554
No 372
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=30.11 E-value=1.4e+02 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCC-hhhHHHHHHHHHhCCCe-EEeCCCCCC
Q 037064 88 KIDLILVVGGWNS-SNTSSLQVIAEDRGIPS-YWIDSEKRI 126 (187)
Q Consensus 88 ~~D~miVVGG~nS-SNT~rL~eia~~~g~~t-~~Ie~~~eL 126 (187)
.+|++.+++.--+ .....|++.|++.|..+ .-+.+.+|+
T Consensus 133 GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~ 173 (260)
T PRK00278 133 GADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEEL 173 (260)
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 5999999998844 57889999999998543 224455555
No 373
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=30.11 E-value=3.4e+02 Score=23.36 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=35.6
Q ss_pred cchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHH-HHHHHHhCCCeEEeCCCCC
Q 037064 67 FNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSL-QVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 67 ~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL-~eia~~~g~~t~~Ie~~~e 125 (187)
++.++ .+..+++..|. ....-++++|--.|.+.-+- +..-...|.+++++++...
T Consensus 24 ~~~l~---~~~~~~~~~l~-~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~ 79 (321)
T PRK11543 24 PERLG---DDFVRAANIIL-HCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEA 79 (321)
T ss_pred HHhcc---HHHHHHHHHHH-hcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHH
Confidence 34555 25667777776 33347888888877775443 3333457889998876533
No 374
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=29.71 E-value=54 Score=26.34 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=16.1
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
.+.|++.| || +|..|++|++.-++.
T Consensus 62 ~kP~vI~v-~g-~~~~s~~l~~~v~~~ 86 (150)
T PF14639_consen 62 HKPDVIAV-GG-NSRESRKLYDDVRDI 86 (150)
T ss_dssp H--SEEEE----SSTHHHHHHHHHHHH
T ss_pred cCCeEEEE-cC-CChhHHHHHHHHHHH
Confidence 47887766 77 789999998866553
No 375
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=29.63 E-value=2.5e+02 Score=25.26 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=45.0
Q ss_pred CeEEEEEcC-CCC-hHHHHHHHHHHHHHHhhhcccccccccccccchhc-HHHHHH-HHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQT-TMI-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAAQER-QDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQT-T~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~R-Q~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+-. ++. ...++.+.+.|++. ..++.+|+.+. +.|.+. ++++..+.+..+|++|-|||=..
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEA----------GIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 577777643 333 23445566666431 12234455432 222222 22333333357999999999999
Q ss_pred hhhHHHHHHHHHh
Q 037064 101 SNTSSLQVIAEDR 113 (187)
Q Consensus 101 SNT~rL~eia~~~ 113 (187)
-.+.|...+....
T Consensus 94 iD~AK~ia~~~~~ 106 (375)
T cd08179 94 IDAAKAMWIFYEY 106 (375)
T ss_pred HHHHHHHHHHHhC
Confidence 9999987765433
No 376
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=29.52 E-value=2.7e+02 Score=24.95 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
+++..+...++|+||-|||=.+-.+.|.+.+. .++|-+.|-+-.
T Consensus 75 ~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~--~~~p~i~IPTta 118 (366)
T PRK09423 75 RLVAIAEENGCDVVIGIGGGKTLDTAKAVADY--LGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHhcCCCEEEEecChHHHHHHHHHHHH--cCCCEEEeCCcc
Confidence 34444433479999999999999999988765 467888777643
No 377
>PRK06242 flavodoxin; Provisional
Probab=29.44 E-value=2e+02 Score=21.76 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=42.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCCC--CCCCCCcch-----h-hhhchhh---hhhhccccCCCcEEEEe
Q 037064 91 LILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSEK--RIGPGNKMA-----Y-KLMHGEL---VEKENWLPKGQITIGVT 158 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~~--eL~~~~~~~-----~-~~~~~~~---~~~~~wl~~~~~~IGIT 158 (187)
++||-++..+.||+++++...+ .+...+.|+... ++..-+.+- | ..+..++ +....++ .+...+-++
T Consensus 3 ~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~-~~k~~~~f~ 81 (150)
T PRK06242 3 ALIVYASVHHGNTEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV-SGKKAFIFS 81 (150)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh-cCCeEEEEE
Confidence 4667777658999999986544 444444443321 111100000 0 0011122 2223334 355556666
Q ss_pred eCCCCcHHHHHHHHHHHHhc
Q 037064 159 AGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 159 AGASTP~~lI~eVi~~l~~~ 178 (187)
+++..+...++.+...|...
T Consensus 82 t~g~~~~~~~~~l~~~l~~~ 101 (150)
T PRK06242 82 TSGLPFLKYHKALKKKLKEK 101 (150)
T ss_pred CCCCCcchHHHHHHHHHHHC
Confidence 66665554466666666543
No 378
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.38 E-value=3.5e+02 Score=22.88 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=47.8
Q ss_pred HHHHhhhcCCCEEEEEcCC--CChhhHHHHHHHHHh-CCCeE-EeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEE
Q 037064 80 AVYKLVEEKIDLILVVGGW--NSSNTSSLQVIAEDR-GIPSY-WIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITI 155 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~--nSSNT~rL~eia~~~-g~~t~-~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~I 155 (187)
-+.++.....|+++|=|.- ...|+.+|++..++. .+|.+ +..+.+.+.+. ..-+
T Consensus 16 ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~----------------------aD~~ 73 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRY----------------------ADAV 73 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcC----------------------CCEE
Confidence 3345554348998766653 678999999999884 47865 77777777541 2222
Q ss_pred EEee--CCCCcHHHHHHHHHHH
Q 037064 156 GVTA--GASTPDKAIEGVLKKV 175 (187)
Q Consensus 156 GITA--GASTP~~lI~eVi~~l 175 (187)
-+-+ .+--|+|+|..=+..+
T Consensus 74 ~~~sllns~~~~~i~g~~~~~~ 95 (205)
T TIGR01769 74 FFMSLLNSADTYFIVGAQILGA 95 (205)
T ss_pred EEEEeecCCCcchhhhHHHHHH
Confidence 2222 4567999998855554
No 379
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=29.37 E-value=1.2e+02 Score=30.85 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHH
Q 037064 74 AQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQ 107 (187)
Q Consensus 74 T~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~ 107 (187)
...|+.+++.|-+..+|.+|||||-.|--+-.++
T Consensus 83 ~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l 116 (762)
T cd00764 83 REGRLQAAYNLIQRGITNLCVIGGDGSLTGADLF 116 (762)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHH
Confidence 3478899999988899999999999998777643
No 380
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=29.34 E-value=48 Score=28.92 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=46.7
Q ss_pred hccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccc----------cccccccccchhcHHHHHHHHHH
Q 037064 12 KSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVE----------NVNEHFISFNTICHAAQERQDAV 81 (187)
Q Consensus 12 ~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~----------~~~~~~~~~nTIC~AT~~RQ~av 81 (187)
-.+.-.|||... +.-.++|-++...+++++..+.+++.+..-+..- .+........|+|+-|-+= +
T Consensus 11 l~~~~~fdp~~~-~G~VivN~s~v~k~d~~~al~i~~~v~~~g~~vs~~v~i~~~~~~vp~g~v~I~TvCSiT~Dg---i 86 (236)
T PF01995_consen 11 LMYRVTFDPETG-KGKVIVNISYVDKEDLDEALEIFKEVFKAGLSVSPRVKIEDEGERVPEGKVGIATVCSITIDG---I 86 (236)
T ss_dssp HHCC---BTTTT-B-EEEEEEEEEEGGGHHHHHHHHHHHHHTT-SSSSEEEEEE------SSEEEEEEE-CHHHHH---H
T ss_pred HHHhCCCCCcCC-cccEEEEEEEecHHHHHHHHHHHHHHHHcCCcccCceEEeeccccccCCceEEEEEeeEEEhh---h
Confidence 356678999955 4445899999999999999999999876655310 0112344567999999762 3
Q ss_pred HHhhhcCCCEEEEEcC
Q 037064 82 YKLVEEKIDLILVVGG 97 (187)
Q Consensus 82 ~~La~~~~D~miVVGG 97 (187)
|.+..+=..---||
T Consensus 87 --Llk~GIpv~p~yGG 100 (236)
T PF01995_consen 87 --LLKNGIPVNPKYGG 100 (236)
T ss_dssp --HHCTT--EEEEEEE
T ss_pred --hhhcCCcccccccc
Confidence 33333444444454
No 381
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=29.21 E-value=4e+02 Score=24.10 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHH-HHhhhcCC----CEEEEEcCC
Q 037064 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAV-YKLVEEKI----DLILVVGGW 98 (187)
Q Consensus 24 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av-~~La~~~~----D~miVVGG~ 98 (187)
.+++.+|+-..+...-.+.+.+.+++ . +-. ...+.+.+--++.|.+.=+.+ ..+....+ |++|-|||=
T Consensus 26 ~~~~lvVtd~~v~~~~~~~v~~~l~~----~-g~~--~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG 98 (354)
T cd08199 26 SGRRFVVVDQNVDKLYGKKLREYFAH----H-NIP--LTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGG 98 (354)
T ss_pred CCeEEEEECccHHHHHHHHHHHHHHh----c-CCc--eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCc
Confidence 36788888766653333444444432 1 100 001112222233333333333 23333345 999999999
Q ss_pred CChhhHHHHHHHHHhCCCeEEeCC
Q 037064 99 NSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 99 nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
..-++.+.+.....+|+|-+.|-+
T Consensus 99 ~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 99 VLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 999999988765667888888877
No 382
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=29.14 E-value=1.5e+02 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=16.3
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
++-+++=||+.+-.++..|++.+++.|...+.|-
T Consensus 70 ~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 70 RVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 3444444555555555555555555555444443
No 383
>PRK08250 glutamine amidotransferase; Provisional
Probab=28.97 E-value=92 Score=26.43 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=13.6
Q ss_pred cCCCEEEEEcCCCChh
Q 037064 87 EKIDLILVVGGWNSSN 102 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN 102 (187)
...|++||-||+.|.+
T Consensus 44 ~~~d~vii~GGp~~~~ 59 (235)
T PRK08250 44 DGFDLLIVMGGPQSPR 59 (235)
T ss_pred cccCEEEECCCCCChh
Confidence 3699999999998865
No 384
>PRK15482 transcriptional regulator MurR; Provisional
Probab=28.73 E-value=2.7e+02 Score=23.77 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=31.9
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+=|++|++.- .++..+..+++.|+++|.++..|.+...
T Consensus 181 ~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~ 220 (285)
T PRK15482 181 KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLAD 220 (285)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799988874 5777788889999999999999988654
No 385
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=28.48 E-value=2.9e+02 Score=24.73 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=43.4
Q ss_pred CeEEEEEcCCC-C-hHHHHHHHHHHHHHHhhhcccccccccccccchh---cHHHHHHHHHHHHhhhcCCCEEEEEcCCC
Q 037064 25 VKVGIANQTTM-I-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CHAAQERQDAVYKLVEEKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~av~~La~~~~D~miVVGG~n 99 (187)
+|+.+|+-... . ...++++.+.|+.. ..++.+|+.+ |.-.. =.+++..+....+|++|-|||=.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~-v~~~~~~~~~~~~D~IIavGGGS 94 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEEL----------GIEYEIFDEVEENPSLET-IMEAVEIAKKFNADFVIGIGGGS 94 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHc----------CCeEEEeCCCCCCcCHHH-HHHHHHHHHhcCCCEEEEeCCch
Confidence 57777765443 2 23456676666541 1123334332 22221 22233333335799999999999
Q ss_pred ChhhHHHHHHHH
Q 037064 100 SSNTSSLQVIAE 111 (187)
Q Consensus 100 SSNT~rL~eia~ 111 (187)
+-.+-|.+-+..
T Consensus 95 viD~aK~ia~~~ 106 (357)
T cd08181 95 PLDAAKAIAVLI 106 (357)
T ss_pred HHHHHHHHHHHH
Confidence 999999776654
No 386
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.41 E-value=1.3e+02 Score=23.52 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=27.3
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
--+++|++-+.|++|.-++. + ...+.+..++.|+|++.|..
T Consensus 60 ~n~E~ll~l~PDlii~~~~~-~--~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVALKPDLVILYGGF-Q--AQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhccCCCEEEEecCC-C--chhHHHHHHHcCCCEEEeCC
Confidence 34455555579998874432 2 22477777889999998974
No 387
>PRK02947 hypothetical protein; Provisional
Probab=28.38 E-value=1e+02 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=32.7
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+-|++|+|- +-++.++..+++.|+++|.++.-|.+..
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 4689999984 5678889999999999999999998875
No 388
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=28.32 E-value=32 Score=23.11 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.5
Q ss_pred hccccCCCcEEEEeeCCCCcHHH
Q 037064 145 ENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 145 ~~wl~~~~~~IGITAGASTP~~l 167 (187)
.+|| +||+|-|+|.--|.
T Consensus 12 PnWl-----kVGLtlGts~flW~ 29 (49)
T PF15088_consen 12 PNWL-----KVGLTLGTSVFLWI 29 (49)
T ss_pred CChh-----heeeecchHHHHHH
Confidence 4999 59999999988775
No 389
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.30 E-value=59 Score=31.17 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=35.8
Q ss_pred ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 64 FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 64 ~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
.++..++|+--..+| +++|..-+.|.++..||-+..|...+.+.|+-.
T Consensus 98 A~V~~~~a~~l~~~~--l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~L 145 (463)
T TIGR01319 98 AKIANVYAYDLNNKD--IEAIEESNLDIILFAGGTDGGEEECGIHNAKML 145 (463)
T ss_pred cEEEEEEeecCCHHH--HHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHH
Confidence 456788888765555 344444579999999999999999877777654
No 390
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=28.21 E-value=1.1e+02 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.9
Q ss_pred CCCChhhHHHHHHHHHhCCCeEEe
Q 037064 97 GWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 97 G~nSSNT~rL~eia~~~g~~t~~I 120 (187)
+..|+|++.|....++.|.....+
T Consensus 5 D~g~~~~~~l~~~l~~~g~~~~~~ 28 (188)
T TIGR00888 5 DFGSQYTQLIARRLRELGVYSELV 28 (188)
T ss_pred ECCchHHHHHHHHHHHcCCEEEEE
Confidence 677899999999999999766544
No 391
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=28.17 E-value=60 Score=26.36 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=40.6
Q ss_pred CChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-CcHHHHHHHHHHHHh
Q 037064 99 NSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS-TPDKAIEGVLKKVFE 177 (187)
Q Consensus 99 nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS-TP~~lI~eVi~~l~~ 177 (187)
--+|+.-|.+..++.|.....+....|=.. .|. ..-..|+ ..+..|=+|+|.| ||+.++.+++..+..
T Consensus 17 ~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~--~I~--------~~l~~~~-~~~dlVIttGG~G~t~~D~t~ea~~~~~~ 85 (170)
T cd00885 17 VDTNAAFLAKELAELGIEVYRVTVVGDDED--RIA--------EALRRAS-ERADLVITTGGLGPTHDDLTREAVAKAFG 85 (170)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEeCCCHH--HHH--------HHHHHHH-hCCCEEEECCCCCCCCCChHHHHHHHHhC
Confidence 457999999999999977554433222110 000 1122455 4566666665543 678888888887643
No 392
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=28.12 E-value=81 Score=24.31 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=10.4
Q ss_pred CCCEEEEEcCCC
Q 037064 88 KIDLILVVGGWN 99 (187)
Q Consensus 88 ~~D~miVVGG~n 99 (187)
..|+++|.||++
T Consensus 62 ~~D~lvvpGG~~ 73 (165)
T cd03134 62 DYDALVIPGGTN 73 (165)
T ss_pred HCCEEEECCCCC
Confidence 589999999974
No 393
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=28.01 E-value=1.2e+02 Score=27.20 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=24.2
Q ss_pred cCCCEEEEEcC-CCChh----hHH-HHHHHH---HhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVGG-WNSSN----TSS-LQVIAE---DRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSN----T~r-L~eia~---~~g~~t~~Ie~~~eL~ 127 (187)
.++|+||+-|+ ++++| +.+ +.+.-+ ..|+|.|.|..--|-.
T Consensus 39 ~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~ 88 (390)
T COG0420 39 EKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSP 88 (390)
T ss_pred ccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCch
Confidence 46899999998 33333 222 222222 3458999997655543
No 394
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=27.97 E-value=1.2e+02 Score=25.76 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhh----HH---HHHHHHHhCCCeEEeCCCCCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNT----SS---LQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT----~r---L~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+++++.+..+|++|+.|+--.... .. +.++..+.++|.|.+-.--|..
T Consensus 31 ~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~ 86 (267)
T cd07396 31 EAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLGNHDLY 86 (267)
T ss_pred HHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecCccccc
Confidence 3666665446888888887543333 22 2344445667777777666664
No 395
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.77 E-value=1e+02 Score=24.02 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=31.2
Q ss_pred chhcHHHHHH-HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 68 NTICHAAQER-QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 68 nTIC~AT~~R-Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
-.+|....++ +++++++. ..+|++|+.||---+.--...+..++.+
T Consensus 46 ~~~v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 46 LGIVPDDPEEIREILRKAV-DEADVVLTTGGTGVGPRDVTPEALEELG 92 (144)
T ss_pred EeecCCCHHHHHHHHHHHH-hCCCEEEECCCCCCCCCccHHHHHHHhC
Confidence 3455554443 34455555 4799999999977766667777777776
No 396
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.77 E-value=57 Score=29.78 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeC
Q 037064 81 VYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAG 160 (187)
Q Consensus 81 v~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAG 160 (187)
+..|.+..+.++||+| .-+.+-+.|...++.. ++--+.++.+++. ... ...-..|+||
T Consensus 178 l~~L~~~~~nl~iV~g-s~~p~l~~l~k~~~~~-~~i~~~~~~~dma------------------~LM--ke~d~aI~Aa 235 (318)
T COG3980 178 LAELEQKNVNLHIVVG-SSNPTLKNLRKRAEKY-PNINLYIDTNDMA------------------ELM--KEADLAISAA 235 (318)
T ss_pred HHHhhccCeeEEEEec-CCCcchhHHHHHHhhC-CCeeeEecchhHH------------------HHH--Hhcchheecc
Q ss_pred CCCcHHHH
Q 037064 161 ASTPDKAI 168 (187)
Q Consensus 161 ASTP~~lI 168 (187)
+||-.+..
T Consensus 236 GstlyEa~ 243 (318)
T COG3980 236 GSTLYEAL 243 (318)
T ss_pred chHHHHHH
No 397
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=27.75 E-value=4.7e+02 Score=23.85 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCCC
Q 037064 87 EKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIGP 128 (187)
Q Consensus 87 ~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~~ 128 (187)
..+|.++|.....+. .-.++.+.|++.|++.+.+-+..|+..
T Consensus 187 ~~id~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP~~~e~~~ 229 (445)
T TIGR03025 187 HRVDEVIIALPLSEEARILELLLQLRDLGVDVRLVPDLFEFLL 229 (445)
T ss_pred CCCCEEEEecCcccHHHHHHHHHHHHhcCCEEEEeCchhhhcc
Confidence 469998887554443 236899999999999999999888864
No 398
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=27.71 E-value=89 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=30.9
Q ss_pred HHHHhhhcCCCEEEE--EcCCCC-----hhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 80 AVYKLVEEKIDLILV--VGGWNS-----SNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 80 av~~La~~~~D~miV--VGG~nS-----SNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
+..+++ ...|++|| +||.-. +...-.+++|+..+.|+.+|-+.+
T Consensus 74 ~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 74 LFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred HHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 445666 47999999 555532 122346789999999999997755
No 399
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=27.68 E-value=3.2e+02 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.8
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
.+-|++|++.- ..+.++..+++.|++.|.++..|.+
T Consensus 174 ~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 174 SDGDVVVLISHTGRTKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECC
Confidence 36799998854 4478899999999999999999997
No 400
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=27.68 E-value=3e+02 Score=24.64 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=44.0
Q ss_pred CeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchh---cHHHHHHHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CHAAQERQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+...+.. .-++++.+.|++. ..++.+|+.+ |.-..- ++++..+-...+|++|=|||=..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v-~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDA----------GLAAALFDEVPPNPTEAAV-EAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHH-HHHHHHHHhcCCCEEEEeCCchH
Confidence 4778887655432 2466776666541 1112223222 222222 22333332347999999999999
Q ss_pred hhhHHHHHHHHH
Q 037064 101 SNTSSLQVIAED 112 (187)
Q Consensus 101 SNT~rL~eia~~ 112 (187)
-.+.|.+.+...
T Consensus 94 iD~aK~ia~~~~ 105 (370)
T cd08192 94 LDLAKAVALMAG 105 (370)
T ss_pred HHHHHHHHHHHh
Confidence 999998877643
No 401
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=27.67 E-value=74 Score=25.83 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++|.||-.|.=|.-=-+++.+.+.+.++|-+..-.|
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~~~~~~YiAT~~~~D 36 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSFGGPVTYIATARPFD 36 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS--SCEEEEESSHHHH
T ss_pred CEEeCCCCcchHHHHHHHHHhcCCCcEEEeCCCCCC
Confidence 589999999998888888877777777788877765
No 402
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=27.66 E-value=3.8e+02 Score=26.50 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=76.6
Q ss_pred cHHHHHHHHhhccCCCCCCCCCCCeEEE-EEcCCCChHHHHHHHHHHHHHH--hhhcccccccccccccchhcHHHHHHH
Q 037064 2 TKEAFLEKFKKSVSKGFDPDIDLVKVGI-ANQTTMIKGETEEIGKLVEKTM--MRKFGVENVNEHFISFNTICHAAQERQ 78 (187)
Q Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~kv~v-vsQTT~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~nTIC~AT~~RQ 78 (187)
-+||++...-.+|----||. +-.++.+ ++|-.+-..- .-=..++.++. .++.. .-..+=.
T Consensus 158 RPEQl~sal~rA~~VmTDPA-~~GpvTl~l~QDVq~eA~-Dyp~~FF~~rv~~~rR~~---------------Pd~~eL~ 220 (617)
T COG3962 158 RPEQLMSALPRAMRVMTDPA-DCGPVTLALCQDVQAEAY-DYPESFFEKRVWRIRRPP---------------PDERELA 220 (617)
T ss_pred CHHHHHHHHHHHHHHhCChh-hcCceEEEechhhhhhhc-CCcHHhhhhhhhhccCCC---------------CCHHHHH
Confidence 47899999999999999999 6566654 5676653211 11111222211 11211 1123344
Q ss_pred HHHHHhhhcCCCEEEEEcC--CCChhhHHHHHHHHHhCCCeEEeC-CCCCCCCCCcchhhhhchhhhhhhccccCCCcEE
Q 037064 79 DAVYKLVEEKIDLILVVGG--WNSSNTSSLQVIAEDRGIPSYWID-SEKRIGPGNKMAYKLMHGELVEKENWLPKGQITI 155 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG--~nSSNT~rL~eia~~~g~~t~~Ie-~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~I 155 (187)
+|+.-|. ..--=+||+|| +-|--...|..+++..|+|..--+ ..+-|..+ +|.+..-|
T Consensus 221 ~A~~lik-~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~d------------------hplNlG~v 281 (617)
T COG3962 221 DAAALIK-SAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWD------------------HPLNLGGV 281 (617)
T ss_pred HHHHHHH-hcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccCCccccccc------------------Cccccccc
Confidence 5555444 34556777777 788889999999999998863221 22333321 22345679
Q ss_pred EEeeCCCCcHHHHHH
Q 037064 156 GVTAGASTPDKAIEG 170 (187)
Q Consensus 156 GITAGASTP~~lI~e 170 (187)
|||. +++.+.+.++
T Consensus 282 GvTG-t~AAN~~A~~ 295 (617)
T COG3962 282 GVTG-TLAANRAAEE 295 (617)
T ss_pred cccc-hHHHHhhhhh
Confidence 9985 5555555544
No 403
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=27.63 E-value=3.8e+02 Score=24.67 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=60.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccc-c-ccccccccchhcHHHH-HH-HHHHHHhhhcCCC---EEEEEcC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVE-N-VNEHFISFNTICHAAQ-ER-QDAVYKLVEEKID---LILVVGG 97 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~-~~~~~~~~nTIC~AT~-~R-Q~av~~La~~~~D---~miVVGG 97 (187)
+|+.+|+-.++.. -+..+.+.+...+... +.. . ....+.+.+..|.-+. ++ ++.+..+.+..+| ++|-+||
T Consensus 31 ~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~-g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 31 PKVLVVIDSGVAQ-ANPQLASDIQAYAAAH-ADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CeEEEEECcchHH-hhhhHHHHHHHHHHhc-CCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECC
Confidence 5788888877664 2223344444322211 100 0 0112334466666653 32 3444444444455 9999999
Q ss_pred CCChhhHHHHHHHHHhCCCeEEeCCC--CCCCC
Q 037064 98 WNSSNTSSLQVIAEDRGIPSYWIDSE--KRIGP 128 (187)
Q Consensus 98 ~nSSNT~rL~eia~~~g~~t~~Ie~~--~eL~~ 128 (187)
=....+.+.+.....+|+|-..|-+- +++|.
T Consensus 109 G~v~D~ag~vA~~~~rGip~I~IPTTlla~vDs 141 (369)
T cd08198 109 GAVLDAVGYAAATAHRGVRLIRIPTTVLAQNDS 141 (369)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCCchhhhCC
Confidence 99999999887766778999988877 56553
No 404
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.62 E-value=3.2e+02 Score=24.25 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.9
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+|++|-|||-.+-.+.|.+-... ++|-+.|-+.
T Consensus 77 ~~~d~iiavGGGs~~D~aK~ia~~~--~~p~i~VPTt 111 (345)
T cd08171 77 QEADMIFAVGGGKAIDTVKVLADKL--GKPVFTFPTI 111 (345)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHHHc--CCCEEEecCc
Confidence 4799999999999999999876653 6677777653
No 405
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=27.38 E-value=1.8e+02 Score=25.74 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.9
Q ss_pred EEEEEcC------CCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeC-CCC
Q 037064 91 LILVVGG------WNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAG-AST 163 (187)
Q Consensus 91 ~miVVGG------~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAG-AST 163 (187)
.||.||. --=+|...|++...++|.+.+++....|=.. +..+........+..|=+|+| .=|
T Consensus 5 ~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~-----------~I~~~l~~a~~r~D~vI~tGGLGPT 73 (255)
T COG1058 5 EIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPD-----------RIVEALREASERADVVITTGGLGPT 73 (255)
T ss_pred EEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHH-----------HHHHHHHHHHhCCCEEEECCCcCCC
Confidence 3566665 3447999999999999999999988776432 111111111134555555555 689
Q ss_pred cHHHHHHHHHHHH
Q 037064 164 PDKAIEGVLKKVF 176 (187)
Q Consensus 164 P~~lI~eVi~~l~ 176 (187)
+|.+..+.+.+-.
T Consensus 74 ~DDiT~e~vAka~ 86 (255)
T COG1058 74 HDDLTAEAVAKAL 86 (255)
T ss_pred ccHhHHHHHHHHh
Confidence 9999999887754
No 406
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=27.30 E-value=2.7e+02 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=35.1
Q ss_pred HHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh-----CCCeEEeCCCCCCCC
Q 037064 81 VYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR-----GIPSYWIDSEKRIGP 128 (187)
Q Consensus 81 v~~La~~~~D~miVVGG~nSSNT~rL~eia~~~-----g~~t~~Ie~~~eL~~ 128 (187)
+..+.. .--.++|.|+..|.=|.=|..++... +.+.+-||+..||..
T Consensus 137 L~~~v~-~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~ 188 (323)
T PRK13833 137 IRSAID-SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC 188 (323)
T ss_pred HHHHHH-cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccccc
Confidence 334443 33468999999999999999998764 245788999999863
No 407
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=27.25 E-value=71 Score=27.40 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEe
Q 037064 73 AAQERQDAVYKLVEEKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~I 120 (187)
...+=+.++..|. +.+|++++..+. -.+|...+...|.+.++|.|-.
T Consensus 170 ~~~~~~~~~~~l~-~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~ 217 (294)
T PF04392_consen 170 SSEDLEQALEALA-EKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGS 217 (294)
T ss_dssp SGGGHHHHHHHHC-TT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEES
T ss_pred cHhHHHHHHHHhh-ccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEEC
Confidence 3455577888887 589998887652 2345556788888888888753
No 408
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=27.10 E-value=1e+02 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=10.6
Q ss_pred cCCCEEEEEcCCC
Q 037064 87 EKIDLILVVGGWN 99 (187)
Q Consensus 87 ~~~D~miVVGG~n 99 (187)
...|++||.||..
T Consensus 60 ~~~D~lvvpg~~~ 72 (166)
T PF13278_consen 60 PDFDILVVPGGPG 72 (166)
T ss_dssp SCCSEEEEE-STT
T ss_pred ccCCEEEeCCCCC
Confidence 3799999999988
No 409
>PRK10376 putative oxidoreductase; Provisional
Probab=27.07 E-value=64 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=21.3
Q ss_pred hhhccccCCCcEEEEeeCCCCcHHHHHHHHH
Q 037064 143 EKENWLPKGQITIGVTAGASTPDKAIEGVLK 173 (187)
Q Consensus 143 ~~~~wl~~~~~~IGITAGASTP~~lI~eVi~ 173 (187)
.-..|+-.....+.+..|+++|+.+-+.+-.
T Consensus 240 ~al~w~l~~~~~~~~i~G~~~~~~l~en~~a 270 (290)
T PRK10376 240 VALAWLLQRSPNILLIPGTSSVAHLRENLAA 270 (290)
T ss_pred HHHHHHHhCCCCeeEeeCCCCHHHHHHHHhh
Confidence 4457874333346789999999998776543
No 410
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.92 E-value=1.6e+02 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=15.1
Q ss_pred EEEEcCCCChhhHHHHHHHHH
Q 037064 92 ILVVGGWNSSNTSSLQVIAED 112 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~ 112 (187)
+||.|+ .+.||+++++...+
T Consensus 2 ~Iiy~S-~tGnT~~~A~~i~~ 21 (140)
T TIGR01753 2 LIVYAS-MTGNTEEMANIIAE 21 (140)
T ss_pred EEEEEC-CCcHHHHHHHHHHH
Confidence 566776 69999999976544
No 411
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=26.86 E-value=1.2e+02 Score=28.05 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=25.5
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCe
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t 117 (187)
.++.|||+..|+-|..+..++...++|-
T Consensus 105 ~V~aVIG~~~S~~s~ava~~~~~~~IP~ 132 (458)
T cd06375 105 AIAGVIGGSYSSVSIQVANLLRLFQIPQ 132 (458)
T ss_pred CeEEEEcCCCchHHHHHHHHhhhccccc
Confidence 5888999999999999999999988774
No 412
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.84 E-value=1.8e+02 Score=23.14 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=39.0
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc----CCCcEEEEeeCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP----KGQITIGVTAGAST 163 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~IGITAGAST 163 (187)
..|++|..-+-..-| ..+++.|++. .....+++++. .. -++| .+.-.|||++|...
T Consensus 70 ~a~lViaaT~d~e~N-~~i~~~a~~~-~~vn~~d~~~~-~~-----------------f~~pa~v~~~~l~iaisT~G~s 129 (157)
T PRK06719 70 DAHLIYAATNQHAVN-MMVKQAAHDF-QWVNVVSDGTE-SS-----------------FHTPGVIRNDEYVVTISTSGKD 129 (157)
T ss_pred CceEEEECCCCHHHH-HHHHHHHHHC-CcEEECCCCCc-Cc-----------------EEeeeEEEECCeEEEEECCCcC
Confidence 466665554444444 4566677664 45555555553 11 2222 35678999998887
Q ss_pred cHHHHHHHHHHHHh
Q 037064 164 PDKAIEGVLKKVFE 177 (187)
Q Consensus 164 P~~lI~eVi~~l~~ 177 (187)
|- +-..+-++|++
T Consensus 130 P~-la~~lr~~ie~ 142 (157)
T PRK06719 130 PS-FTKRLKQELTS 142 (157)
T ss_pred hH-HHHHHHHHHHH
Confidence 73 44455555544
No 413
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=26.83 E-value=1.9e+02 Score=27.45 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHhhhcCCCEEEEEcC--CCChhhHHHHHHHHHhCCCeEE
Q 037064 78 QDAVYKLVEEKIDLILVVGG--WNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG--~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++++..|. ..---+||+|+ .++.-...|.++|++.|.|.+.
T Consensus 206 ~~~~~~L~-~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~t 248 (571)
T PRK07710 206 RKLVQAVS-VAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVH 248 (571)
T ss_pred HHHHHHHH-hCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEE
Confidence 44455554 34557888884 3454578899999999998763
No 414
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=26.81 E-value=91 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=27.4
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
.++-|||+..|+.+..+..+|.+.++|-.-.
T Consensus 72 ~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~ 102 (384)
T cd06393 72 GVVAIFGPSQGSCTNAVQSICNALEVPHIQL 102 (384)
T ss_pred CcEEEECCCChHHHHHHHHHHhccCCCeEec
Confidence 6888999999999999999999999886544
No 415
>PRK10637 cysG siroheme synthase; Provisional
Probab=26.78 E-value=2.6e+02 Score=26.06 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
.++++ ++.--+..--.++++.|++.|+...-+++++.=+= |+ ..-+..+.-.|+|++|.-.|- +
T Consensus 72 ~~~lv-~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f-----~~---------pa~~~~g~l~iaisT~G~sP~-~ 135 (457)
T PRK10637 72 TCWLA-IAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASF-----IM---------PSIIDRSPLMVAVSSGGTSPV-L 135 (457)
T ss_pred CCEEE-EECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeE-----EE---------eeEEecCCEEEEEECCCCCcH-H
Confidence 36543 33334555667899999999877666666543220 00 022224678999999988884 3
Q ss_pred HHHHHHHHHh
Q 037064 168 IEGVLKKVFE 177 (187)
Q Consensus 168 I~eVi~~l~~ 177 (187)
...+-+.|++
T Consensus 136 a~~lr~~ie~ 145 (457)
T PRK10637 136 ARLLREKLES 145 (457)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 416
>PRK07714 hypothetical protein; Provisional
Probab=26.69 E-value=1.4e+02 Score=22.04 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=27.8
Q ss_pred cCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+++= ++++..--|.|++ ++...|+..++|.+.+.+-+||-
T Consensus 33 g~~~-lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG 73 (100)
T PRK07714 33 GKAK-LVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLG 73 (100)
T ss_pred CCce-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 3454 4555555566654 56677989899988888888885
No 417
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=26.68 E-value=4.4e+02 Score=23.17 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh-----CCCeEEeCCCCCCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR-----GIPSYWIDSEKRIGP 128 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~-----g~~t~~Ie~~~eL~~ 128 (187)
.+.+..+.+ .--.++|+|+..|.=|.=|..++... +.+..-||+..|+..
T Consensus 122 ~~~L~~~v~-~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~ 176 (299)
T TIGR02782 122 RDVLREAVL-ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQC 176 (299)
T ss_pred HHHHHHHHH-cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcC
Confidence 344555553 44578899999999999999998764 345778899888863
No 418
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=26.64 E-value=1.2e+02 Score=24.29 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCChh----hHHHHHHHHHhCCCeEEe
Q 037064 88 KIDLILVVGGWNSSN----TSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 88 ~~D~miVVGG~nSSN----T~rL~eia~~~g~~t~~I 120 (187)
..|.+|+-||+.+.. ...|++-+.+.+.|.+=|
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEE
Confidence 699999999987633 344555454555555533
No 419
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=26.46 E-value=1e+02 Score=27.82 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=46.1
Q ss_pred EEEEEcCCC------ChhhHHHHHHHHHhCCCeEEeCC-CCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-
Q 037064 91 LILVVGGWN------SSNTSSLQVIAEDRGIPSYWIDS-EKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS- 162 (187)
Q Consensus 91 ~miVVGG~n------SSNT~rL~eia~~~g~~t~~Ie~-~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS- 162 (187)
++|++|+.- -+|+.-|.++.++.|.....+.- ++|.+. |+ ..-..|+..++..|=.|+|+|
T Consensus 159 aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~---I~--------~al~~a~~~~~DlIITTGGtg~ 227 (312)
T PRK03604 159 AVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAE---IA--------AAVAAWIAEGYALIITTGGTGL 227 (312)
T ss_pred EEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHH---HH--------HHHHHhhhCCCCEEEECCCCCC
Confidence 477788743 68999999999999965433322 122211 00 112356424567676666655
Q ss_pred CcHHHHHHHHHHHHh
Q 037064 163 TPDKAIEGVLKKVFE 177 (187)
Q Consensus 163 TP~~lI~eVi~~l~~ 177 (187)
+|..++-+++..+.+
T Consensus 228 g~~D~tpeAl~~lg~ 242 (312)
T PRK03604 228 GPRDVTPEALAPLLE 242 (312)
T ss_pred CCCccHHHHHHHhcC
Confidence 577788888887653
No 420
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=26.38 E-value=1.1e+02 Score=25.44 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=39.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
..|.+..-.++...-...++..+.+.+|+. ++. +. +.+..+....|..+.+|+.|+.+...+.
T Consensus 91 ~~i~I~~~~~~~~~~l~~~l~~~~~~~p~~--------~i~----~~--~~~~~~~~~~l~~g~~Dl~i~~~~~~~~ 153 (296)
T PRK11242 91 GSLRLAMTPTFTAYLIGPLIDAFHARYPGI--------TLT----IR--EMSQERIEALLADDELDVGIAFAPVHSP 153 (296)
T ss_pred eEEEEEeccchhhhhhHHHHHHHHHHCCCC--------EEE----EE--eCCHHHHHHHHHCCCCcEEEEecCCCCc
Confidence 467788888888777778877776643321 122 11 1233445556777899999987775543
No 421
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.31 E-value=1.2e+02 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=32.0
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+=|++|+|-. -++.++...++.|+++|.++.-|.+..+
T Consensus 88 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 127 (321)
T PRK11543 88 ESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPT 127 (321)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 36799888876 4778888889999999999999988654
No 422
>PHA03025 hypothetical protein; Provisional
Probab=26.20 E-value=71 Score=22.63 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHhC
Q 037064 100 SSNTSSLQVIAEDRG 114 (187)
Q Consensus 100 SSNT~rL~eia~~~g 114 (187)
--|+++|+|||+...
T Consensus 24 k~nakkl~ei~e~~k 38 (68)
T PHA03025 24 KENAKKLAEICEKIK 38 (68)
T ss_pred hhhHHHHHHHHHhhh
Confidence 368899999998864
No 423
>PRK00758 GMP synthase subunit A; Validated
Probab=26.20 E-value=94 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=25.7
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
||+|-+..++|+..+.+..++.|.+...+..
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~ 31 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPN 31 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEEC
Confidence 5778889999999999999999987766663
No 424
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=26.15 E-value=1.3e+02 Score=25.91 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=45.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCC--e-------EEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIP--S-------YWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~--t-------~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA 161 (187)
.+-|-|..-|.=|.-|-.+|+...-. . |-.++++.|.. . .+...+||.+|-
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~-----------------~---~g~~i~~v~TG~ 74 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRK-----------------L---PGEPIIGVETGK 74 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHh-----------------C---CCCeeEEeccCC
Confidence 45566667788888888888886422 1 11122222211 1 278899999999
Q ss_pred CC--cHHHHHHHHHHHHhc
Q 037064 162 ST--PDKAIEGVLKKVFEI 178 (187)
Q Consensus 162 ST--P~~lI~eVi~~l~~~ 178 (187)
.| |..++.+.++.|...
T Consensus 75 ~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 75 GCHLDASMNLEAIEELVLD 93 (202)
T ss_pred ccCCcHHHHHHHHHHHhhc
Confidence 99 999999999988753
No 425
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=26.10 E-value=1.2e+02 Score=27.67 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=25.8
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
+++.|||+..|+-|..++.+|...++|-.
T Consensus 103 ~V~aviG~~~S~~t~ava~i~~~~~iP~I 131 (463)
T cd06376 103 KVVGVIGASASSVSIMVANILRLFQIPQI 131 (463)
T ss_pred CeEEEECCCCchHHHHHHHHhccccCccc
Confidence 58889999999999999999999887743
No 426
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.08 E-value=1.4e+02 Score=24.24 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
-+++|++-+.|+||.-+..+ ...+++.-++.|+|++.+....
T Consensus 50 n~E~i~~l~PDlIi~~~~~~---~~~~~~~l~~~gipvv~~~~~~ 91 (235)
T cd01149 50 SAEGVLSLKPTLVIASDEAG---PPEALDQLRAAGVPVVTVPSTP 91 (235)
T ss_pred CHHHhhccCCCEEEEcCCCC---CHHHHHHHHHcCCeEEEecCCC
Confidence 34555555799998765543 3466677778899999887543
No 427
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=25.99 E-value=49 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=9.6
Q ss_pred CEEEEEcCCCC
Q 037064 90 DLILVVGGWNS 100 (187)
Q Consensus 90 D~miVVGG~nS 100 (187)
|-|+|.||.++
T Consensus 2 ~~~~vfGG~~~ 12 (49)
T PF13415_consen 2 NKLYVFGGYDD 12 (49)
T ss_pred CEEEEECCcCC
Confidence 67999999996
No 428
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.82 E-value=1.8e+02 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
++.+.+.+.+.|++|.+|| -|-|-. |+.-|+..|+|+++-
T Consensus 80 ~~~~~l~~~kPd~vi~~g~-~~~~~~-~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDA-PDFNLT-KELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHhcCCCEEEEeCC-CCccHH-HHHHHhhCCCCEEEE
Confidence 3444454457999999996 676764 666777889887554
No 429
>PRK13018 cell division protein FtsZ; Provisional
Probab=25.78 E-value=2.2e+02 Score=26.45 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEE
Q 037064 75 QERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
.+=++.++++. ..+|.++|+ ||.-|.=+..+++++++.+..++-
T Consensus 100 ee~~d~I~~~l-e~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~ 147 (378)
T PRK13018 100 EESRDEIKEVL-KGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVG 147 (378)
T ss_pred HHHHHHHHHHh-cCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEE
Confidence 34456678887 589998887 668888889999999998876654
No 430
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=25.65 E-value=2.2e+02 Score=25.98 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 76 ERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+=++.++++. ..+|.++|+ ||.-|.=+.-|++++++.+..++-|=.
T Consensus 90 e~~d~Ir~~l-e~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt 139 (349)
T TIGR00065 90 ESRDEIRKLL-EGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVT 139 (349)
T ss_pred HHHHHHHHHH-hCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEe
Confidence 3445677887 589999997 567777788999999999877766643
No 431
>PRK13669 hypothetical protein; Provisional
Probab=25.64 E-value=57 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 037064 160 GASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 160 GASTP~~lI~eVi~~l~~ 177 (187)
-|.||+.+++.|..+|++
T Consensus 57 ~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 57 EGETPEELVENIYAHLEE 74 (78)
T ss_pred ecCCHHHHHHHHHHHHhh
Confidence 388999999999999986
No 432
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.64 E-value=1.5e+02 Score=22.95 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=27.2
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
-+++|++-+.|+||.-++.+ ..+++..++.|++++.+....
T Consensus 52 n~E~l~~l~PDlii~~~~~~----~~~~~~l~~~gi~v~~~~~~~ 92 (195)
T cd01143 52 NVEKIVALKPDLVIVSSSSL----AELLEKLKDAGIPVVVLPAAS 92 (195)
T ss_pred CHHHHhccCCCEEEEcCCcC----HHHHHHHHHcCCcEEEeCCCC
Confidence 34455545799987644332 336777778899999887654
No 433
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=25.63 E-value=1.2e+02 Score=27.01 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=36.9
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.|+=|....-.+.+. +|.. + ++..|||+..|+.+ +..+|.+.++|-.
T Consensus 45 ~l~~~D~~~~~~~a~~~~~-~li~-~-~v~aiiGp~~S~~~--~a~i~~~~~iP~I 95 (404)
T cd06370 45 QFEWVDTHGDEVLSIRAVS-DWWK-R-GVVAFIGPECTCTT--EARLAAAWNLPMI 95 (404)
T ss_pred EEEEEecCCChHHHHHHHH-HHHh-c-CceEEECCCchhHH--HHHHHhhcCCcEE
Confidence 4567788888776665554 5553 2 78888999988654 5679999988854
No 434
>PRK06217 hypothetical protein; Validated
Probab=25.62 E-value=1.2e+02 Score=24.20 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=27.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-|+|+|..-|.-|.--..|++..|.+.+..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~ 35 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDY 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce
Confidence 478999999999999999999999887655543
No 435
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.55 E-value=3.5e+02 Score=21.58 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=41.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.+|+++.=-.+.. ++..+.+.+.- .-....+++ ..+=+..+.++.... +=+||||.
T Consensus 78 ~~Iavv~~~~~~~-~~~~~~~ll~~-----------~i~~~~~~~----~~e~~~~i~~~~~~G--~~viVGg~------ 133 (176)
T PF06506_consen 78 PKIAVVGYPNIIP-GLESIEELLGV-----------DIKIYPYDS----EEEIEAAIKQAKAEG--VDVIVGGG------ 133 (176)
T ss_dssp SEEEEEEESS-SC-CHHHHHHHHT------------EEEEEEESS----HHHHHHHHHHHHHTT----EEEESH------
T ss_pred CcEEEEecccccH-HHHHHHHHhCC-----------ceEEEEECC----HHHHHHHHHHHHHcC--CcEEECCH------
Confidence 6888887666552 24444444421 111122332 345566777776433 55678994
Q ss_pred HHHHHHHHhCCCeEEeCC
Q 037064 105 SLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~ 122 (187)
..+++|++.|.++++|++
T Consensus 134 ~~~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 134 VVCRLARKLGLPGVLIES 151 (176)
T ss_dssp HHHHHHHHTTSEEEESS-
T ss_pred HHHHHHHHcCCcEEEEEe
Confidence 236788999999988876
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=25.25 E-value=1e+02 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-++|+|..-|.-|.---.|++..|.+.++++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 478999999999998899999999888877754
No 437
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.05 E-value=66 Score=23.53 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+|+++.-.|-..-| .++++.|+++|++...+++++.
T Consensus 60 ~~~lV~~at~d~~~n-~~i~~~a~~~~i~vn~~D~p~~ 96 (103)
T PF13241_consen 60 GADLVFAATDDPELN-EAIYADARARGILVNVVDDPEL 96 (103)
T ss_dssp TESEEEE-SS-HHHH-HHHHHHHHHTTSEEEETT-CCC
T ss_pred hheEEEecCCCHHHH-HHHHHHHhhCCEEEEECCCcCC
Confidence 588888877777777 8899999999988877776654
No 438
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.02 E-value=4.5e+02 Score=23.26 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+|+.+|+-.......++.+.+.|+. . +- .-.+..+...|.- .+-.++++.+-+.++|++|-|||-.+-.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~----~-~i---~~~~~~~~~~p~~-~~v~~~~~~~~~~~~D~IIavGGGS~iD~a 93 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAA----A-GI---DARFEVFGGECTR-AEIERLAEIARDNGADVVIGIGGGKTLDTA 93 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHh----C-CC---eEEEEEeCCcCCH-HHHHHHHHHHhhcCCCEEEEecCchhhHHH
Confidence 5778887555544455555555543 1 00 0001112222322 223344444434589999999999999999
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
|.+.+. .++|-+.|-+-
T Consensus 94 K~ia~~--~~~P~iaIPTT 110 (351)
T cd08170 94 KAVADY--LGAPVVIVPTI 110 (351)
T ss_pred HHHHHH--cCCCEEEeCCc
Confidence 988765 35677777653
No 439
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.90 E-value=1.1e+02 Score=23.41 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
++++.++. .++|++|+.||--=+---...+..++.+
T Consensus 49 ~~~i~~~~-~~~DlvittGG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 49 RAALIEAS-READLVLTTGGTGVGRRDVTPEALAELG 84 (133)
T ss_pred HHHHHHHH-hcCCEEEECCCCCCCCCcchHHHHHHhc
Confidence 34555565 3699999999977677777788887776
No 440
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=24.62 E-value=1.5e+02 Score=23.22 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=41.6
Q ss_pred CeEEEEEcCCCCh------HHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCC
Q 037064 25 VKVGIANQTTMIK------GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGW 98 (187)
Q Consensus 25 ~kv~vvsQTT~~~------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~ 98 (187)
=+|+||++-.-.. ...+.+++.|+. ...|. ... .++++|-..|..+++|++|||---
T Consensus 44 lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~-----------~~~~~---~~~---~~~~ea~~~l~~g~~~~~ivIP~~ 106 (164)
T TIGR03061 44 LPVAVVNEDKGATYDGKTLNAGDDLVKELKK-----------NDDLD---WHF---VSAKEAEKGLADGKYYMVITIPED 106 (164)
T ss_pred CeEEEEECCCCCCcCCcccchHHHHHHHHhc-----------CCCcc---eEE---cCHHHHHHHhHcCcEEEEEEECcc
Confidence 3899999876442 125666666643 11222 221 278888888888999999999887
Q ss_pred CChhhH
Q 037064 99 NSSNTS 104 (187)
Q Consensus 99 nSSNT~ 104 (187)
-|.+-.
T Consensus 107 Fs~~l~ 112 (164)
T TIGR03061 107 FSENAT 112 (164)
T ss_pred hhHHHH
Confidence 775543
No 441
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=24.60 E-value=28 Score=21.64 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=8.8
Q ss_pred CEEEEEcCCCChh
Q 037064 90 DLILVVGGWNSSN 102 (187)
Q Consensus 90 D~miVVGG~nSSN 102 (187)
+-|+|+||.++++
T Consensus 13 ~~i~v~GG~~~~~ 25 (49)
T PF13418_consen 13 NSIYVFGGRDSSG 25 (49)
T ss_dssp TEEEEE--EEE-T
T ss_pred CeEEEECCCCCCC
Confidence 6899999999876
No 442
>PRK11440 putative hydrolase; Provisional
Probab=24.48 E-value=72 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHhCCCeEEeC
Q 037064 101 SNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie 121 (187)
+|.++|.+.|++.|.|.+|+.
T Consensus 35 ~~i~~l~~~ar~~g~pVi~~~ 55 (188)
T PRK11440 35 ARAARLAAKFRASGSPVVLVR 55 (188)
T ss_pred HHHHHHHHHHHHcCCcEEEEe
Confidence 689999999999999999885
No 443
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.20 E-value=3.8e+02 Score=21.49 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=44.4
Q ss_pred HHHH-HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhh-hchhhhhhhccccCCC
Q 037064 75 QERQ-DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL-MHGELVEKENWLPKGQ 152 (187)
Q Consensus 75 ~~RQ-~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~ 152 (187)
..+| +.+..|....+|.+|+.+...+. ..+..+.+..+.|...|+...+-.....+..-. ..++..... .+..|.
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~--~~~~~l~~~~~ipvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~-l~~~G~ 117 (269)
T cd06275 41 PERQRSYLRMLAQKRVDGLLVMCSEYDQ--PLLAMLERYRHIPMVVMDWGPEDDFADKIQDNSEEGGYLATRH-LIELGH 117 (269)
T ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCh--HHHHHHHhcCCCCEEEEecccCCCCCCeEeeCcHHHHHHHHHH-HHHCCC
Confidence 3444 34556665679999999865443 232333334688999998753211101111000 112222222 233578
Q ss_pred cEEEEeeCCC
Q 037064 153 ITIGVTAGAS 162 (187)
Q Consensus 153 ~~IGITAGAS 162 (187)
.+|++..|..
T Consensus 118 ~~i~~i~~~~ 127 (269)
T cd06275 118 RRIGCITGPL 127 (269)
T ss_pred ceEEEEeCCC
Confidence 8999987643
No 444
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.12 E-value=1.6e+02 Score=20.00 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.7
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++|||| +...--++....+.|...+.|+..+.+-
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 578887 3456778888888898899998888875
No 445
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=23.94 E-value=3.1e+02 Score=20.48 Aligned_cols=59 Identities=15% Similarity=0.353 Sum_probs=40.9
Q ss_pred cchhcH----HHHHHHHHHHHhhhcCCCEEEEE-------------cCCCC-----hhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 67 FNTICH----AAQERQDAVYKLVEEKIDLILVV-------------GGWNS-----SNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 67 ~nTIC~----AT~~RQ~av~~La~~~~D~miVV-------------GG~nS-----SNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
..+++. .+..++.+-..+....+|++|+= |+.+. .+-..+-++|+..|+|-+.|...+
T Consensus 32 l~~~l~~~~~~~~~~~~~~~~~~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~ 111 (126)
T PF10881_consen 32 LSDLLRPEGPSRRERKEAFNRINQKHVDFVVCDKRDGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKD 111 (126)
T ss_pred HHHhhCccCCCchhHHHHHHHhcCCCccEEEEECCCCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345555 56788888888887889998876 44333 233456678888999988885443
Q ss_pred C
Q 037064 125 R 125 (187)
Q Consensus 125 e 125 (187)
.
T Consensus 112 ~ 112 (126)
T PF10881_consen 112 S 112 (126)
T ss_pred C
Confidence 3
No 446
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=23.81 E-value=2.3e+02 Score=22.02 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=27.5
Q ss_pred HHHHHhhhc-CCCEEEEEc------CCCChhhHHHHHHHHHh----CCCeEEeC
Q 037064 79 DAVYKLVEE-KIDLILVVG------GWNSSNTSSLQVIAEDR----GIPSYWID 121 (187)
Q Consensus 79 ~av~~La~~-~~D~miVVG------G~nSSNT~rL~eia~~~----g~~t~~Ie 121 (187)
+.+.++... +++ -|||| |..|..|.+--+.+++. +.|.++++
T Consensus 38 ~~l~~~i~~~~~~-~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~D 90 (130)
T TIGR00250 38 SRIEELLKEWTPD-KIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWD 90 (130)
T ss_pred HHHHHHHHHcCCC-EEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 444444432 344 47889 99999888877777665 56666654
No 447
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.79 E-value=3.5e+02 Score=23.57 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=44.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhc---HHHHHHHHHHHHhhh----cCCCEEEEE
Q 037064 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC---HAAQERQDAVYKLVE----EKIDLILVV 95 (187)
Q Consensus 23 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC---~AT~~RQ~av~~La~----~~~D~miVV 95 (187)
.+++||||+=-| -.-+.+|...++++++. .++..|.+-= .|..+=-.|++++.. ..+|++|++
T Consensus 13 ~p~~I~vITs~~--gAa~~D~~~~~~~r~~~--------~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~ 82 (319)
T PF02601_consen 13 FPKRIAVITSPT--GAAIQDFLRTLKRRNPI--------VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIII 82 (319)
T ss_pred CCCEEEEEeCCc--hHHHHHHHHHHHHhCCC--------cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEe
Confidence 446999886433 34466676667764332 1233222221 122222234444432 148999999
Q ss_pred cCCCC------hhhHHHHHHHHHhCCCe
Q 037064 96 GGWNS------SNTSSLQVIAEDRGIPS 117 (187)
Q Consensus 96 GG~nS------SNT~rL~eia~~~g~~t 117 (187)
=|=-| =|.-.|++-..+...|.
T Consensus 83 RGGGs~eDL~~FN~e~varai~~~~~Pv 110 (319)
T PF02601_consen 83 RGGGSIEDLWAFNDEEVARAIAASPIPV 110 (319)
T ss_pred cCCCChHHhcccChHHHHHHHHhCCCCE
Confidence 55443 37777776554554554
No 448
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=23.76 E-value=1.5e+02 Score=26.81 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.3
Q ss_pred HHhhhcCC---CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 82 YKLVEEKI---DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 82 ~~La~~~~---D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
..+.+..+ |++|.|||-.+-++.+.+...-.+|.+-.+|-+
T Consensus 67 ~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~rgi~~i~iPT 110 (346)
T cd08196 67 ESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYMRGVSWSFVPT 110 (346)
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEEecc
Confidence 33443456 899999999999999999887788888777743
No 449
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.73 E-value=2.3e+02 Score=24.50 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCC
Q 037064 33 TTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGW 98 (187)
Q Consensus 33 TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~ 98 (187)
.+|+.+|..++++...+. .+ + .+.+.-|..|.+=-+.++...+..+|+++|+--+
T Consensus 47 ~~Lt~eEr~~l~~~~~~~----~~------~-vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 47 PSLSFQEKLELLKAYSDI----TD------K-VIFQVGSLNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred ccCCHHHHHHHHHHHHHH----cC------C-EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 357777777776666542 11 1 2445555555554444444444457887777664
No 450
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=23.71 E-value=2.3e+02 Score=26.46 Aligned_cols=105 Identities=23% Similarity=0.193 Sum_probs=64.3
Q ss_pred hccCCCCCCCCCCCeEEEEEcCCC-ChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCC
Q 037064 12 KSVSKGFDPDIDLVKVGIANQTTM-IKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKID 90 (187)
Q Consensus 12 ~~~s~~~~~~~~~~kv~vvsQTT~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D 90 (187)
.-|.||..+--+.-.-+...|+.- --.+|..+.+.+.+.+...++.+ +..+... -=..|.-=..++..+....=.
T Consensus 7 ~Ll~PGP~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~--~~~~~ll--~gsGt~amEAav~sl~~pgdk 82 (383)
T COG0075 7 LLLTPGPVPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTE--NGDVVLL--SGSGTLAMEAAVASLVEPGDK 82 (383)
T ss_pred eeeeCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCC--CCcEEEE--cCCcHHHHHHHHHhccCCCCe
Confidence 346677766633333333333333 55778888887777777777532 1111111 124566677888899843334
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+++++-|+-+ .|+.++|+.+|.+...|+-.
T Consensus 83 VLv~~nG~FG---~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 83 VLVVVNGKFG---ERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred EEEEeCChHH---HHHHHHHHHhCCceEEEeCC
Confidence 5555666554 89999999999887776654
No 451
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=23.66 E-value=5.2e+02 Score=23.66 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHH-HHHHHhCC
Q 037064 37 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQ-VIAEDRGI 115 (187)
Q Consensus 37 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~-eia~~~g~ 115 (187)
-.+|.+|.+.+.+.+.+.++- ..+..++=--+..|.-=.-++..|...+-|.++|.| +=+.|.+ ++|+..|.
T Consensus 34 s~~F~~i~~e~~~~L~~l~~~---~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g----~FG~r~~~eia~~~g~ 106 (374)
T TIGR01365 34 SKLGKEKLAEAIKKTREMLGV---PADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE----SFGKGWVTDVTKQLKL 106 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCC---CCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC----HHHHHHHHHHHHhcCC
Confidence 456777877777767777651 112222222578888888999998732456788776 6678988 99999998
Q ss_pred C-eEEeC
Q 037064 116 P-SYWID 121 (187)
Q Consensus 116 ~-t~~Ie 121 (187)
+ +..|+
T Consensus 107 ~~v~~l~ 113 (374)
T TIGR01365 107 PDVRVLE 113 (374)
T ss_pred CCcEEEc
Confidence 4 55553
No 452
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.64 E-value=3.7e+02 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=26.2
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeEEeCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~~Ie~ 122 (187)
++++..|+ +..-++++|--.|.-. ..|...-...|.+++++.+
T Consensus 24 ~~~~~~i~--~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~ 67 (179)
T cd05005 24 DKLISAIL--NAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE 67 (179)
T ss_pred HHHHHHHH--hCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCC
Confidence 34566665 4688999987666432 2333333345788888764
No 453
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=23.63 E-value=2.4e+02 Score=25.92 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 73 AAQERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
|..+=++.+++.. ...|.++|+ ||.-+..+-.|++++++.|..+|-|-+
T Consensus 81 aAee~~~~I~~~l-~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt 133 (338)
T COG0206 81 AAEESIEEIEEAL-KGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVT 133 (338)
T ss_pred HHHHHHHHHHHHh-ccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEE
Confidence 4455567777777 479966665 678999999999999999988876654
No 454
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=23.63 E-value=1.8e+02 Score=25.30 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
..|++++.|+.- ..+..+++...+...+.|+|-.--|-
T Consensus 25 ~pD~Vl~~GDi~-~~~~~~~~~l~~l~~p~~~V~GNHD~ 62 (238)
T cd07397 25 QPDLVLFVGDFG-NESVQLVRAISSLPLPKAVILGNHDA 62 (238)
T ss_pred CCCEEEECCCCC-cChHHHHHHHHhCCCCeEEEcCCCcc
Confidence 579888888874 44566666555655566666554443
No 455
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=23.60 E-value=80 Score=23.86 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh--
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN-- 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN-- 102 (187)
.||+++--.-++..++..+.+.++.. -+...-...+-....+.|..+-..+...........|++||.||.....
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a---~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~ 78 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAA---GANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL 78 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHC---CCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHH
Confidence 36777777778888888887777641 0000000000001111222222222233332212479999999976532
Q ss_pred --hHHHHHHHHH---hCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 103 --TSSLQVIAED---RGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 103 --T~rL~eia~~---~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
..+|.+..++ +|.+.--|-+..-+-. ....+..+ =||-...+..+-..+++++.+..
T Consensus 79 ~~~~~l~~~l~~~~~~~~~I~aic~G~~~La---------------~aGll~~~---~gv~~~~~~~~~~~~~~~~~~~~ 140 (142)
T cd03132 79 APSGRALHFVTEAFKHGKPIGAVGEGSDLLE---------------AAGIPLED---PGVVTADDVKDVFTDRFIDALAL 140 (142)
T ss_pred ccChHHHHHHHHHHhcCCeEEEcCchHHHHH---------------HcCCCCCC---CcEEEecCcchHHHHHHHHHHHh
Confidence 3445554443 4444444444433211 11122111 35555444444447888877754
No 456
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=23.56 E-value=1e+02 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.475 Sum_probs=25.7
Q ss_pred cCCCEEEEEcCCCChhhH--HHHHH--HH-HhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGGWNSSNTS--SLQVI--AE-DRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~--rL~ei--a~-~~g~~t~~Ie~~~e 125 (187)
++.|++|++|..-|.+.. -+.+. .. +.-+++|+|..-.+
T Consensus 25 gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 25 GPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC
Confidence 689999999997776443 22222 21 22358999988664
No 457
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.50 E-value=3.3e+02 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.2
Q ss_pred CCcEEEEeeCCCCcHHHHHHH
Q 037064 151 GQITIGVTAGASTPDKAIEGV 171 (187)
Q Consensus 151 ~~~~IGITAGASTP~~lI~eV 171 (187)
|...+|+....+||+.+++.+
T Consensus 129 G~~V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 129 GKETIVIGAEPGFSTALQNSA 149 (160)
T ss_pred CCEEEEEeCCCCChHHHHHhc
Confidence 677888888889999988765
No 458
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=23.39 E-value=1.7e+02 Score=21.90 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=19.3
Q ss_pred cccccchhcHHHHHHHHHH-HHhhhcCCCEEEEEcCCCCh
Q 037064 63 HFISFNTICHAAQERQDAV-YKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av-~~La~~~~D~miVVGG~nSS 101 (187)
++.++.|-. +...++-+. .++. ...|.+||+||=-+-
T Consensus 30 ~~~~~~t~~-~~~~~~~~~~~~~~-~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 30 DYEVIETES-AGHAEALARILALD-DYPDVIVVVGGDGTL 67 (130)
T ss_dssp EEEEEEESS-TTHHHHHHHHHHHT-TS-SEEEEEESHHHH
T ss_pred ceEEEEEec-cchHHHHHHHHhhc-cCccEEEEEcCccHH
Confidence 345555544 333333322 3343 234999999996543
No 459
>PRK13054 lipid kinase; Reviewed
Probab=23.33 E-value=1.9e+02 Score=25.07 Aligned_cols=18 Identities=17% Similarity=0.208 Sum_probs=14.7
Q ss_pred cCCCEEEEEcCCCChhhH
Q 037064 87 EKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~ 104 (187)
...|++||+||--+=|.-
T Consensus 55 ~~~d~vvv~GGDGTl~ev 72 (300)
T PRK13054 55 LGVATVIAGGGDGTINEV 72 (300)
T ss_pred cCCCEEEEECCccHHHHH
Confidence 468999999998876654
No 460
>PLN03080 Probable beta-xylosidase; Provisional
Probab=23.31 E-value=1.6e+02 Score=29.81 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHhhhcCCCEEEEEcCCCCh---------------hhHHHHHHHHHh-CCCeE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSS---------------NTSSLQVIAEDR-GIPSY 118 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSS---------------NT~rL~eia~~~-g~~t~ 118 (187)
+++.++| +++|++||+.|.+++ |-..|.+-..+. +.|+.
T Consensus 479 ~~A~~~A-~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvI 533 (779)
T PLN03080 479 GEAIAIA-KRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVV 533 (779)
T ss_pred HHHHHHh-ccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEE
Confidence 3344677 589999999997765 445666655554 33544
No 461
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold. CynR is a LysR-like transcriptional regulator of the cyn operon, which encodes genes that allow cyanate to be used as a sole source of nitrogen. The operon includes three genes in the following order: cynT (cyanate permease), cynS (cyanase), and cynX (a protein of unknown function). CynR negatively regulates its own expression independently of cyanate. CynR binds to DNA and induces bending of DNA in the presence or absence of cyanate, but the amount of bending is decreased by cyanate. The CynR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding
Probab=23.24 E-value=1.4e+02 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChh
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSN 102 (187)
.+....|..+.+|+.|+.+....++
T Consensus 40 ~~~~~~l~~g~~Dl~i~~~~~~~~~ 64 (197)
T cd08425 40 ERIEAALADDRLDLGIAFAPVRSPD 64 (197)
T ss_pred HHHHHHHHcCCccEEEEecCCCCCC
Confidence 3445556668999999887655443
No 462
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=23.06 E-value=4.3e+02 Score=24.24 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCC--eEEeCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIP--SYWIDSE 123 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~--t~~Ie~~ 123 (187)
+=...+.+|.+...|+.|||+-..+...+.|..-+++.|.. -+||-+.
T Consensus 231 d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~ 280 (472)
T cd06374 231 SFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVGGEFQLIGSD 280 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCCCceEEEEec
Confidence 33446667753358988888655566778888888888864 3566543
No 463
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=23.00 E-value=1e+02 Score=28.74 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=29.8
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+.|++|||. ++-+.|--.|+.-+++.|.+.|+|-+--|.|
T Consensus 113 ~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~D 154 (376)
T PF05049_consen 113 YRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDSD 154 (376)
T ss_dssp GG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHHH
T ss_pred cccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEeccccc
Confidence 4699988665 5889999999999999999999999887654
No 464
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=22.95 E-value=87 Score=25.19 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=25.1
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCC-eEEeCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIP-SYWIDS 122 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~-t~~Ie~ 122 (187)
+=+-.|+.++||.+++.+-++.|++ ||||-.
T Consensus 69 lTFDDg~~~~~~~~il~iL~k~~i~ATfFv~g 100 (267)
T COG0726 69 LTFDDGPLDGNTPRILPLLKKYGIKATFFVVG 100 (267)
T ss_pred EEeecCCCCCCcHHHHHHHHHcCCceEEEEeh
Confidence 3444577777999999999999987 777766
No 465
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=22.82 E-value=1e+02 Score=27.01 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=53.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh-H
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT-S 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT-~ 104 (187)
-+.|++-..+-.+.++.+...-+. + .. -+-..|=|-.. .|=.-.+.+ ..|+++.|-+-=+... .
T Consensus 84 aiSVlTe~~~F~Gs~~dL~~v~~~-~-~~--------PvL~KDFIid~---~QI~eA~~~--GADaVLLI~~~L~~~~l~ 148 (254)
T PF00218_consen 84 AISVLTEPKFFGGSLEDLRAVRKA-V-DL--------PVLRKDFIIDP---YQIYEARAA--GADAVLLIAAILSDDQLE 148 (254)
T ss_dssp EEEEE--SCCCHHHHHHHHHHHHH-S-SS---------EEEES---SH---HHHHHHHHT--T-SEEEEEGGGSGHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHH-h-CC--------CcccccCCCCH---HHHHHHHHc--CCCEeehhHHhCCHHHHH
Confidence 466777777777777776444332 1 00 01123334443 454444555 4999999999999888 9
Q ss_pred HHHHHHHHhCCC-eEEeCCCCCCC
Q 037064 105 SLQVIAEDRGIP-SYWIDSEKRIG 127 (187)
Q Consensus 105 rL~eia~~~g~~-t~~Ie~~~eL~ 127 (187)
.|++.|++.|.. -.-|.+.+|++
T Consensus 149 ~l~~~a~~lGle~lVEVh~~~El~ 172 (254)
T PF00218_consen 149 ELLELAHSLGLEALVEVHNEEELE 172 (254)
T ss_dssp HHHHHHHHTT-EEEEEESSHHHHH
T ss_pred HHHHHHHHcCCCeEEEECCHHHHH
Confidence 999999999975 46677777775
No 466
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=22.67 E-value=2e+02 Score=22.10 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=15.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEK 49 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~ 49 (187)
||+++...-+...++-...+.++.
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ 24 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLRE 24 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHH
Confidence 466666777777776666666653
No 467
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=22.53 E-value=1.6e+02 Score=23.44 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChh---------hHHHHHHHHHhCCCeEEeCCCC
Q 037064 88 KIDLILVVGGWNSSN---------TSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 88 ~~D~miVVGG~nSSN---------T~rL~eia~~~g~~t~~Ie~~~ 124 (187)
..|.+|+-||..|.+ ...+.+-+.+.+.|.+-|=..-
T Consensus 46 ~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 46 DYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 699999999987761 2333444444556665554433
No 468
>PRK06934 flavodoxin; Provisional
Probab=22.46 E-value=88 Score=26.89 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=27.0
Q ss_pred EEEEcCCCChhhHHHHHH-HHHhCCCeEEeCCCCC
Q 037064 92 ILVVGGWNSSNTSSLQVI-AEDRGIPSYWIDSEKR 125 (187)
Q Consensus 92 miVVGG~nSSNT~rL~ei-a~~~g~~t~~Ie~~~e 125 (187)
++|.+|..+.||+++++. ++..|..-|.|+..+-
T Consensus 62 ~~~~~~~~~GnTk~vAe~Ia~~~gaDl~eI~~~~~ 96 (221)
T PRK06934 62 ILQKNGEVLGSTQYVAQIIQEETGGDLFRIETVKP 96 (221)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 567899999999999975 5556788898987653
No 469
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=22.45 E-value=81 Score=25.26 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=17.1
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGG 97 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG 97 (187)
++..|+.-=+ .+-.+|...+ ..+|++||||-
T Consensus 142 ~vv~fgE~~~--~~~~~~~~~~--~~~Dl~lviGT 172 (178)
T PF02146_consen 142 DVVLFGESLP--EEIEEAIEDA--EEADLLLVIGT 172 (178)
T ss_dssp EE--BTSB-S--HHHHHHHHHH--HH-SEEEEESS
T ss_pred CeeecCCCCH--HHHHHHHHHH--HcCCEEEEEcc
Confidence 3444544333 4556666644 36999999994
No 470
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=22.44 E-value=1.7e+02 Score=26.18 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=34.9
Q ss_pred hhcHHHHHHHHHHHHhh-hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 69 TICHAAQERQDAVYKLV-EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 69 TIC~AT~~RQ~av~~La-~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
+....|..=+..+.++. +.+.|++||.|+.+++=..-| .|...|+|..||+.-.-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~al--aA~~~~IPv~HveaG~r 128 (365)
T TIGR03568 73 GMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAI--AAALLNIPIAHIHGGEV 128 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHH--HHHHhCCcEEEEECCcc
Confidence 34444444344444443 335799999999877544443 34557899999987643
No 471
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.43 E-value=1.5e+02 Score=24.28 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGP 128 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~ 128 (187)
||+|=++.+.|...+....++.|.++..+.++++|..
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~ 37 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQK 37 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcC
Confidence 5677789999999999999999988888999888753
No 472
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=22.40 E-value=1.9e+02 Score=24.53 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=8.4
Q ss_pred HHHHHHhCCCeEEeCCCCC
Q 037064 107 QVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 107 ~eia~~~g~~t~~Ie~~~e 125 (187)
.+..++.++|.|+|=.--|
T Consensus 78 ~~~l~~l~~Pv~~v~GNHD 96 (275)
T PRK11148 78 AEGIAPLRKPCVWLPGNHD 96 (275)
T ss_pred HHHHhhcCCcEEEeCCCCC
Confidence 3333344445555444433
No 473
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=22.24 E-value=2.1e+02 Score=23.91 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHhhhcCCCEEEEEcCCCChh----hHHHHHHHHHhCCC
Q 037064 82 YKLVEEKIDLILVVGGWNSSN----TSSLQVIAEDRGIP 116 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSN----T~rL~eia~~~g~~ 116 (187)
.++. ...|.+|+-||+.|.+ ..+|.+.|.+.+.|
T Consensus 41 ~~~~-~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~P 78 (214)
T PRK07765 41 AAVA-AQFDGVLLSPGPGTPERAGASIDMVRACAAAGTP 78 (214)
T ss_pred HHhh-cCCCEEEECCCCCChhhcchHHHHHHHHHhCCCC
Confidence 3344 3799999999998765 33455555444444
No 474
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.18 E-value=4.1e+02 Score=21.20 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=57.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++.....+-.-|..+.+.+++...+ .| -.+.++++ .....+| +.++.|....+|.+|+.+..+ ..+..
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiii~~~~~-~~~~~ 72 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAARE-HG-----YLLLVVNT--GGDDELEAEAVEALLDHRVDGIIYATMYH-REVTL 72 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCCC-ChhHH
Confidence 455554321334456677777654322 22 11222211 1112333 334556656899999998543 23322
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
.....+.|...++...+-.....+...... +..... ..+..|.++|++..|..
T Consensus 73 ---~~~~~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~a~~-~l~~~g~~~i~~l~~~~ 126 (269)
T cd06288 73 ---PPELLSVPTVLLNCYDADGALPSVVPDEEQGGYDATR-HLLAAGHRRIAFINGEP 126 (269)
T ss_pred ---HHHhcCCCEEEEecccCCCCCCeEEEccHHHHHHHHH-HHHHcCCceEEEEeCCc
Confidence 234567898888754321110111100011 121111 11223788999998754
No 475
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=22.17 E-value=63 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=25.0
Q ss_pred hccccCCCcEEEEeeCCCCcHHHHHHHHHHHH---hccHhhhh
Q 037064 145 ENWLPKGQITIGVTAGASTPDKAIEGVLKKVF---EIKREEAL 184 (187)
Q Consensus 145 ~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~---~~~~~~~~ 184 (187)
..|+-..+..+-+.-|+|+|+.+-+.+ ..+. .+..+++.
T Consensus 270 l~w~l~~~~v~~~i~G~~~~~ql~en~-~a~~~~~~Ls~e~~~ 311 (317)
T TIGR01293 270 IAWCLRNEGVSSVLLGASSAEQLMENL-GSLQVLPKLSSSIIH 311 (317)
T ss_pred HHHHhcCCCCeEEEeCCCCHHHHHHHH-HHhhccCCCCHHHHH
Confidence 478743444457789999999986654 4443 56555543
No 476
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=22.13 E-value=4.8e+02 Score=24.47 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=29.0
Q ss_pred HhhhcCCCEEEEEcC-------CCChhhH---HHHHHHHHhCCCeEEeCCCCC
Q 037064 83 KLVEEKIDLILVVGG-------WNSSNTS---SLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 83 ~La~~~~D~miVVGG-------~nSSNT~---rL~eia~~~g~~t~~Ie~~~e 125 (187)
+++.+.+|-.||||= .+-.++. +|.-|-++.++..|.=.-.-.
T Consensus 207 ~~a~k~a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~ 259 (394)
T PTZ00422 207 EYAPKIADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRN 259 (394)
T ss_pred HhhccCCCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccc
Confidence 445457899999983 3333443 888899999998885443333
No 477
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.84 E-value=1.3e+02 Score=27.23 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=42.0
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEee--CCCCc
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTA--GASTP 164 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITA--GASTP 164 (187)
+.+|++|+--|..- .+.+++.|++.|++.+. .+.. -|.......||||+ |=+|-
T Consensus 67 ~~~d~vv~~~g~~~--~~~~~~~a~~~~i~~~~-----~~~~-----------------~~~~~~~~vI~ITGS~GKTTt 122 (450)
T PRK14106 67 EGVDLVVVSPGVPL--DSPPVVQAHKKGIEVIG-----EVEL-----------------AYRFSKAPIVAITGTNGKTTT 122 (450)
T ss_pred hcCCEEEECCCCCC--CCHHHHHHHHCCCcEEe-----HHHH-----------------HHhhcCCCEEEEeCCCchHHH
Confidence 36899888666533 34489999999977653 1110 01101256899975 66888
Q ss_pred HHHHHHHHHHH
Q 037064 165 DKAIEGVLKKV 175 (187)
Q Consensus 165 ~~lI~eVi~~l 175 (187)
.+++..++...
T Consensus 123 ~~~l~~iL~~~ 133 (450)
T PRK14106 123 TTLLGEIFKNA 133 (450)
T ss_pred HHHHHHHHHHc
Confidence 88888888764
No 478
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=21.79 E-value=6.5e+02 Score=23.68 Aligned_cols=48 Identities=19% Similarity=0.082 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCCCEEEEEcC--CCChhhHHHHHHHHHhCCCeEEeCCCCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGG--WNSSNTSSLQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG--~nSSNT~rL~eia~~~g~~t~~Ie~~~eL 126 (187)
++++..|. ..---+|++|+ .+|.-...|.++|++.|.|.+-=-....+
T Consensus 196 ~~a~~~L~-~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~ 245 (539)
T TIGR03393 196 DAAENKLA-MAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGI 245 (539)
T ss_pred HHHHHHHH-hCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcccCcc
Confidence 45566665 33345666666 34555788999999999887643333333
No 479
>PRK13055 putative lipid kinase; Reviewed
Probab=21.77 E-value=1.4e+02 Score=26.53 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.3
Q ss_pred cCCCEEEEEcCCCChh
Q 037064 87 EKIDLILVVGGWNSSN 102 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN 102 (187)
...|++||+||=-+=|
T Consensus 58 ~~~d~vvv~GGDGTl~ 73 (334)
T PRK13055 58 AGFDLIIAAGGDGTIN 73 (334)
T ss_pred cCCCEEEEECCCCHHH
Confidence 4689999999987755
No 480
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=21.69 E-value=33 Score=27.79 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=11.3
Q ss_pred CCCEEEEEcCCCChh
Q 037064 88 KIDLILVVGGWNSSN 102 (187)
Q Consensus 88 ~~D~miVVGG~nSSN 102 (187)
.+|.+|+=||..+.+
T Consensus 35 ~~dgiii~Gg~~~~~ 49 (183)
T cd01749 35 GIDGLIIPGGESTTI 49 (183)
T ss_pred cCCEEEECCchHHHH
Confidence 699988888875444
No 481
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.65 E-value=2.4e+02 Score=26.52 Aligned_cols=55 Identities=27% Similarity=0.292 Sum_probs=42.3
Q ss_pred ccchhcHHHHHHHHHHHHhhh-cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 66 SFNTICHAAQERQDAVYKLVE-EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 66 ~~nTIC~AT~~RQ~av~~La~-~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
...|.|..|.+=-.++.++.. .+.|+++|-|+.++.=...|+ |....+|..|||-
T Consensus 69 ~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~ala--a~~~~IpV~HvEA 124 (383)
T COG0381 69 PGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALA--AFYLKIPVGHVEA 124 (383)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHH--HHHhCCceEEEec
Confidence 357889999888887777653 379999999999987666554 3345689999984
No 482
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=21.60 E-value=1.3e+02 Score=22.81 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCC----hhhHHHHHHHHHhCCCeEEeC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNS----SNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nS----SNT~rL~eia~~~g~~t~~Ie 121 (187)
.+++.+.+.. ..+|++|+|=..++ +....|.+.+...+.+.++|-
T Consensus 117 ~~~~~~~~~~-~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~ 165 (168)
T PF00350_consen 117 EHTEITEEYL-PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVL 165 (168)
T ss_dssp TTSHHHHHHH-STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEE
T ss_pred hhHHHHHHhh-ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEE
Confidence 3458888888 68999999987776 344556666655555666653
No 483
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.47 E-value=1.6e+02 Score=25.36 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=10.3
Q ss_pred CCChHHHHHHHHHHHH
Q 037064 34 TMIKGETEEIGKLVEK 49 (187)
Q Consensus 34 T~~~~~~~~i~~~l~~ 49 (187)
+|+.+|..++++...+
T Consensus 50 ~ls~~Er~~~~~~~~~ 65 (292)
T PRK03170 50 TLTHEEHEELIRAVVE 65 (292)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4677777777665554
No 484
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.44 E-value=1.9e+02 Score=22.74 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=34.1
Q ss_pred EcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCc
Q 037064 95 VGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 95 VGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP 164 (187)
|=+..|+|+.-+...-++.|.+...+......+. ..+ .++.-|=|+.|+..+
T Consensus 3 ~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~-----------------~~~-~~~dgvIl~Gg~~~~ 54 (181)
T cd01742 3 ILDFGSQYTHLIARRVRELGVYSEILPNTTPLEE-----------------IKL-KNPKGIILSGGPSSV 54 (181)
T ss_pred EEECCCchHHHHHHHHHhcCceEEEecCCCChhh-----------------hcc-cCCCEEEECCCcccc
Confidence 4467789999999999889976666655433221 123 355667778877655
No 485
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=21.39 E-value=3.7e+02 Score=21.74 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIP 116 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~ 116 (187)
+-.+.++++. +.||.++++ ||.-|.=+..|.+++++.+..
T Consensus 71 ~~~~~ir~~l-e~~d~~~i~~slgGGTGsG~~~~i~~~~~~~~~~ 114 (192)
T smart00864 71 ESLDEIREEL-EGADGVFITAGMGGGTGTGAAPVIAEIAKEYGIL 114 (192)
T ss_pred HHHHHHHHHh-cCCCEEEEeccCCCCccccHHHHHHHHHHHcCCc
Confidence 3456678787 579999997 678999999999999977644
No 486
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=21.38 E-value=2.2e+02 Score=24.61 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=32.1
Q ss_pred chhcHHHHHH------HHHHHHhhhcCCCEEEEEcCCCChhh--HHHHHHHHHhCCCeE
Q 037064 68 NTICHAAQER------QDAVYKLVEEKIDLILVVGGWNSSNT--SSLQVIAEDRGIPSY 118 (187)
Q Consensus 68 nTIC~AT~~R------Q~av~~La~~~~D~miVVGG~nSSNT--~rL~eia~~~g~~t~ 118 (187)
..||+..++. +.+.+.+....+.-+++.||--+++. ..|.++|.+ +.+.|
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~a~~~~~~~~lv~~GGVaaN~~lr~~l~~~~~~-~~~~~ 252 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPRALEKPRAKSLVVSGGVAANKYLREGLRKLCSE-GIKLF 252 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGHHHHHHHHHHHHHH-TSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHc-CCEEE
Confidence 4567777663 22222223347889999999887775 467778877 74444
No 487
>PRK08266 hypothetical protein; Provisional
Probab=21.37 E-value=1.8e+02 Score=27.40 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
+.++..|. ..---|||+|+-.+.-...|.++|+..|.|.+.
T Consensus 196 ~~~~~~L~-~AkrPvIv~G~g~~~a~~~l~~lae~~g~pv~t 236 (542)
T PRK08266 196 AAAAALIA-AAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVA 236 (542)
T ss_pred HHHHHHHH-hCCCCEEEECCChhhHHHHHHHHHHHHCCCEEE
Confidence 44555665 345588999988777788999999999998764
No 488
>smart00594 UAS UAS domain.
Probab=21.32 E-value=3.5e+02 Score=20.14 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=47.7
Q ss_pred ccchhcHHHHH--H----HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhch
Q 037064 66 SFNTICHAAQE--R----QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHG 139 (187)
Q Consensus 66 ~~nTIC~AT~~--R----Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~ 139 (187)
++...|..+.. | .+++.++.+ + +.+++.+..+++...+|.+.=+-.+.|++.|=++.-=.
T Consensus 34 ~~~~~c~~c~~~~r~vl~~~~V~~~i~-~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~------------ 99 (122)
T smart00594 34 LHSQDSPDSQVFNRDVLCNEAVKSLIR-E-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ------------ 99 (122)
T ss_pred EeCCCCchHHHHHHHHccCHHHHHHHH-c-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc------------
Confidence 34555655332 3 256677764 3 78888898888887665554444455655443322100
Q ss_pred hhhhhhccccCCCcEEEEeeCCCCcHHHHHH
Q 037064 140 ELVEKENWLPKGQITIGVTAGASTPDKAIEG 170 (187)
Q Consensus 140 ~~~~~~~wl~~~~~~IGITAGASTP~~lI~e 170 (187)
.....++..-|..+|+.++..
T Consensus 100 ----------~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 100 ----------RVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred ----------eeEEEeccccCCCCHHHHHHh
Confidence 012346667899999988865
No 489
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.31 E-value=1.1e+02 Score=24.48 Aligned_cols=28 Identities=7% Similarity=0.309 Sum_probs=20.8
Q ss_pred EcCCCChhhHHHHHHHHHhCCC-eEEeCC
Q 037064 95 VGGWNSSNTSSLQVIAEDRGIP-SYWIDS 122 (187)
Q Consensus 95 VGG~nSSNT~rL~eia~~~g~~-t~~Ie~ 122 (187)
=.|+.+.+|.+|+++.+++|++ ||||-.
T Consensus 13 DDgp~~~~t~~~l~~L~~~~ikaTfFv~g 41 (191)
T TIGR02764 13 DISWGNDYTEPILDTLKEYDVKATFFLSG 41 (191)
T ss_pred ECCCCcccHHHHHHHHHHcCCCEEEEecc
Confidence 3577777788888888888876 677654
No 490
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.31 E-value=2.7e+02 Score=26.43 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCCEEEEEcC--CCChhhHHHHHHHHHhCCCeEE
Q 037064 77 RQDAVYKLVEEKIDLILVVGG--WNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG--~nSSNT~rL~eia~~~g~~t~~ 119 (187)
=++++..|. +.=--|||+|+ .+|.-...|.++|+..|.|.+.
T Consensus 193 i~~~~~~L~-~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~t 236 (563)
T PRK08527 193 IKKAAEAIK-EAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVE 236 (563)
T ss_pred HHHHHHHHH-cCCCCEEEECCCccccchHHHHHHHHHHHCCCEEE
Confidence 355666665 33446777765 4555688999999999998763
No 491
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=21.28 E-value=2.2e+02 Score=23.02 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHhhhcCCCEEEEEcCCCCh
Q 037064 82 YKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSS 101 (187)
.++. ..+|.+|+-||..+.
T Consensus 48 ~~~l-~~~dglvl~GG~~~~ 66 (189)
T cd01745 48 EQYL-ELLDGLLLTGGGDVD 66 (189)
T ss_pred HHHH-hhCCEEEECCCCCCC
Confidence 3444 369999999998764
No 492
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=21.26 E-value=1.8e+02 Score=26.47 Aligned_cols=42 Identities=26% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 73 AAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
.|..--..+++++ ++.|++|.+||+- ..-.|.-.|+|.++|.
T Consensus 79 ~~~~~~~~~~~~~-~~p~~v~~~Gg~v------~~~aA~~~~~p~~~~~ 120 (396)
T TIGR03492 79 LTLGQWRALRKWA-KKGDLIVAVGDIV------PLLFAWLSGKPYAFVG 120 (396)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEECcHH------HHHHHHHcCCCceEEE
Confidence 3444556788887 5899999999998 3335566788877733
No 493
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=21.26 E-value=1.3e+02 Score=26.86 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCChhhHHHHHHHHHhCCC
Q 037064 89 IDLILVVGGWNSSNTSSLQVIAEDRGIP 116 (187)
Q Consensus 89 ~D~miVVGG~nSSNT~rL~eia~~~g~~ 116 (187)
.|+.+||-|.+......|.+.+++.|..
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~ 288 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLS 288 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCc
Confidence 5666666555544345677777777653
No 494
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=21.25 E-value=5.5e+02 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=13.4
Q ss_pred HHHHHhCCCeEEeCCCCCCC
Q 037064 108 VIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 108 eia~~~g~~t~~Ie~~~eL~ 127 (187)
+.+...+....+|+++.-+.
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCc
Confidence 33445566778888887775
No 495
>PRK10586 putative oxidoreductase; Provisional
Probab=21.09 E-value=2.4e+02 Score=25.64 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=36.0
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
++..|+..|.-..-+ .+.+.+...+|+||-|||-.+-.+.|.+.. ..++|-+-|-+.
T Consensus 63 ~~~~~~g~~~~~~v~--~l~~~~~~~~d~iiavGGGs~iD~aK~~a~--~~~~p~i~vPT~ 119 (362)
T PRK10586 63 KHILFRGHCSESDVA--QLAAASGDDRQVVIGVGGGALLDTAKALAR--RLGLPFVAIPTI 119 (362)
T ss_pred eEEEeCCCCCHHHHH--HHHHHhccCCCEEEEecCcHHHHHHHHHHh--hcCCCEEEEeCC
Confidence 344566666533333 233333335899999999999999887643 345676666643
No 496
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=21.08 E-value=5.2e+02 Score=24.00 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=35.3
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDSE 123 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~~ 123 (187)
.-||+....--+.+++.....++.+.|+||- +++.-+.++-.. .|.|.+..+..
T Consensus 379 Egia~~~~~~~~~l~~~~g~~~~~i~~~GGg--a~s~~w~Qi~ADv~g~pv~~~~~~ 433 (493)
T TIGR01311 379 EAIAFQTRDVLEAMEKDAGVEITKLRVDGGM--TNNNLLMQFQADILGVPVVRPKVT 433 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEeccc--ccCHHHHHHHHHhcCCeeEecCCC
Confidence 3477777777777766422357899999984 355666666655 46777655543
No 497
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.01 E-value=2.8e+02 Score=22.35 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=26.6
Q ss_pred EEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 94 VVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 94 VVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
+|=+..|.|...|++..++.|.+...+.+.++|+
T Consensus 2 ~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~ 35 (198)
T cd01748 2 AIIDYGMGNLRSVANALERLGAEVIITSDPEEIL 35 (198)
T ss_pred EEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhc
Confidence 4446789999999999999998877777655553
No 498
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.00 E-value=77 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 037064 160 GASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 160 GASTP~~lI~eVi~~l~~ 177 (187)
-|.||+.|++.|..+|.+
T Consensus 57 ~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 57 AAETAEELLEKIKEKIEE 74 (78)
T ss_pred ecCCHHHHHHHHHHHHhc
Confidence 389999999999999976
No 499
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=21.00 E-value=1.3e+02 Score=26.60 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=26.6
Q ss_pred hcCCCEEEEEc--CCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 86 EEKIDLILVVG--GWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 86 ~~~~D~miVVG--G~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..+.+++|++- |.-. +...|.++|+++| .+.|||+.+=-
T Consensus 111 ~~~t~ai~~~h~~G~~~-d~~~i~~~~~~~~--i~lIeD~a~a~ 151 (363)
T PF01041_consen 111 TPKTKAILVVHLFGNPA-DMDAIRAIARKHG--IPLIEDAAQAF 151 (363)
T ss_dssp HTTEEEEEEE-GGGB----HHHHHHHHHHTT---EEEEE-TTTT
T ss_pred ccCccEEEEecCCCCcc-cHHHHHHHHHHcC--CcEEEcccccc
Confidence 35778888863 4433 9999999999987 57899988754
No 500
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.98 E-value=1.5e+02 Score=24.37 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEEcCCC-ChhhHHHHHHHHH----hCCCeEEeCCCCCCC
Q 037064 91 LILVVGGWN-SSNTSSLQVIAED----RGIPSYWIDSEKRIG 127 (187)
Q Consensus 91 ~miVVGG~n-SSNT~rL~eia~~----~g~~t~~Ie~~~eL~ 127 (187)
++++.|+.+ -|||.+|.+.+.+ .|..+.+|+ ..+++
T Consensus 3 Il~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~id-L~~l~ 43 (191)
T PRK10569 3 VITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWN-LQNFA 43 (191)
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEE-ccCCC
Confidence 456667654 4899988888765 455555554 33454
Done!