Query 037064
Match_columns 187
No_of_seqs 121 out of 1030
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 1.8E-49 6.2E-54 347.9 14.8 128 24-180 156-283 (297)
2 3szu_A ISPH, 4-hydroxy-3-methy 100.0 2.6E-49 8.8E-54 350.7 14.4 130 23-179 169-298 (328)
3 3dnf_A ISPH, LYTB, 4-hydroxy-3 92.9 1.7 5.7E-05 37.9 12.4 94 63-177 88-181 (297)
4 1vq8_F 50S ribosomal protein L 92.8 0.37 1.3E-05 35.9 7.1 73 87-178 44-119 (120)
5 3dbi_A Sugar-binding transcrip 91.9 3.8 0.00013 33.6 13.0 131 25-166 62-195 (338)
6 1rlg_A 50S ribosomal protein L 91.3 0.69 2.4E-05 34.3 7.0 76 84-178 39-117 (119)
7 3huu_A Transcription regulator 90.5 5.8 0.0002 31.9 13.5 131 25-167 23-159 (305)
8 3k9c_A Transcriptional regulat 90.4 2.9 9.8E-05 33.6 10.5 125 25-164 13-138 (289)
9 1xbi_A 50S ribosomal protein L 89.7 0.84 2.9E-05 34.1 6.3 72 87-178 44-118 (120)
10 2ale_A SNU13, NHP2/L7AE family 89.6 1.1 3.8E-05 34.3 7.0 78 87-182 47-128 (134)
11 3k4h_A Putative transcriptiona 88.7 7.6 0.00026 30.6 14.2 132 25-168 9-147 (292)
12 2fc3_A 50S ribosomal protein L 88.7 1.3 4.3E-05 33.2 6.6 75 86-179 42-119 (124)
13 3qk7_A Transcriptional regulat 88.6 5.1 0.00017 32.1 10.8 130 25-167 7-141 (294)
14 3m9w_A D-xylose-binding peripl 88.2 8.9 0.0003 30.8 12.3 133 25-167 3-138 (313)
15 3ksm_A ABC-type sugar transpor 87.8 8.2 0.00028 30.0 12.4 132 26-166 2-141 (276)
16 3tb6_A Arabinose metabolism tr 87.0 9.7 0.00033 29.9 13.0 129 25-163 16-148 (298)
17 3o74_A Fructose transport syst 86.6 9.7 0.00033 29.6 12.9 131 25-167 3-135 (272)
18 2h3h_A Sugar ABC transporter, 86.3 12 0.0004 30.2 12.9 126 26-162 3-133 (313)
19 3rot_A ABC sugar transporter, 86.2 11 0.00039 30.0 14.0 134 26-169 5-147 (297)
20 2aif_A Ribosomal protein L7A; 85.8 1.4 4.9E-05 33.5 5.6 73 87-178 56-133 (135)
21 4eyg_A Twin-arginine transloca 85.3 4.9 0.00017 32.8 9.0 94 26-122 8-104 (368)
22 3egc_A Putative ribose operon 85.0 13 0.00043 29.4 11.2 127 25-164 9-137 (291)
23 8abp_A L-arabinose-binding pro 85.0 7.1 0.00024 31.0 9.7 87 26-122 4-90 (306)
24 3td9_A Branched chain amino ac 85.0 5.9 0.0002 32.5 9.4 150 25-177 17-176 (366)
25 2iks_A DNA-binding transcripti 84.9 13 0.00044 29.5 11.3 127 25-164 21-150 (293)
26 3o85_A Ribosomal protein L7AE; 84.8 3.2 0.00011 31.1 7.0 74 86-178 45-121 (122)
27 3h75_A Periplasmic sugar-bindi 83.6 8.5 0.00029 31.6 9.8 91 25-125 4-97 (350)
28 3i45_A Twin-arginine transloca 83.2 9.8 0.00034 31.6 10.1 94 25-121 6-104 (387)
29 3brq_A HTH-type transcriptiona 83.1 15 0.00051 28.8 12.8 126 25-163 20-150 (296)
30 3g1w_A Sugar ABC transporter; 82.7 16 0.00056 28.9 12.8 128 25-163 5-138 (305)
31 3szu_A ISPH, 4-hydroxy-3-methy 82.4 2.5 8.6E-05 37.2 6.3 96 63-178 100-196 (328)
32 3hut_A Putative branched-chain 82.0 6 0.0002 32.3 8.2 95 25-122 5-104 (358)
33 2rgy_A Transcriptional regulat 81.4 18 0.00063 28.6 12.7 125 25-163 9-139 (290)
34 3d8u_A PURR transcriptional re 81.4 17 0.00058 28.3 14.5 126 25-164 4-132 (275)
35 3gv0_A Transcriptional regulat 80.7 19 0.00066 28.5 13.3 131 25-167 9-142 (288)
36 3hcw_A Maltose operon transcri 80.7 20 0.00068 28.6 11.5 130 25-166 8-145 (295)
37 3e3m_A Transcriptional regulat 80.2 24 0.0008 29.1 12.8 126 25-163 71-198 (355)
38 2jnb_A NHP2-like protein 1; sp 80.0 0.98 3.3E-05 35.2 2.6 74 87-178 65-142 (144)
39 3jvd_A Transcriptional regulat 79.0 24 0.00083 28.9 11.1 124 25-168 65-190 (333)
40 3h5o_A Transcriptional regulat 78.8 25 0.00086 28.6 11.9 126 25-164 63-190 (339)
41 3n0w_A ABC branched chain amin 78.6 9.9 0.00034 31.4 8.6 94 25-121 7-104 (379)
42 3lft_A Uncharacterized protein 78.3 24 0.00083 28.2 11.6 87 25-122 3-91 (295)
43 3bbl_A Regulatory protein of L 77.7 17 0.00057 28.8 9.4 127 25-164 5-137 (287)
44 2rjo_A Twin-arginine transloca 77.6 27 0.00092 28.3 11.9 89 25-123 6-97 (332)
45 2fqx_A Membrane lipoprotein TM 77.6 16 0.00054 30.2 9.5 130 25-165 5-142 (318)
46 3jy6_A Transcriptional regulat 77.5 24 0.00081 27.6 15.0 126 24-163 7-134 (276)
47 1usg_A Leucine-specific bindin 77.1 19 0.00064 28.9 9.6 94 26-122 4-101 (346)
48 4f06_A Extracellular ligand-bi 77.1 0.96 3.3E-05 38.0 1.9 94 26-120 7-102 (371)
49 3ipc_A ABC transporter, substr 77.0 15 0.00051 29.8 9.1 93 26-121 4-100 (356)
50 3uug_A Multiple sugar-binding 76.4 28 0.00095 27.9 13.4 90 25-124 4-94 (330)
51 3i09_A Periplasmic branched-ch 76.1 9.9 0.00034 31.3 7.8 94 26-121 6-102 (375)
52 1wn2_A Peptidyl-tRNA hydrolase 75.4 2.5 8.5E-05 31.8 3.6 62 90-175 55-118 (121)
53 4fe7_A Xylose operon regulator 75.2 6.8 0.00023 33.5 6.8 134 12-164 8-151 (412)
54 3lkb_A Probable branched-chain 74.8 16 0.00055 30.2 8.9 94 26-123 9-107 (392)
55 3n0x_A Possible substrate bind 74.6 3.3 0.00011 34.5 4.5 54 63-118 48-101 (374)
56 3d02_A Putative LACI-type tran 74.2 30 0.001 27.2 12.0 90 25-123 5-95 (303)
57 3h5t_A Transcriptional regulat 73.4 14 0.00049 30.5 8.2 123 25-159 69-196 (366)
58 2hsg_A Glucose-resistance amyl 73.3 35 0.0012 27.6 11.3 125 25-162 61-187 (332)
59 3kke_A LACI family transcripti 72.9 34 0.0012 27.3 12.6 128 25-166 16-145 (303)
60 3kjx_A Transcriptional regulat 72.4 37 0.0013 27.6 10.5 125 25-162 69-195 (344)
61 3bil_A Probable LACI-family tr 72.2 40 0.0014 27.7 12.1 126 25-163 67-195 (348)
62 3o21_A Glutamate receptor 3; p 72.2 2.7 9.2E-05 35.7 3.4 53 63-118 44-97 (389)
63 2dri_A D-ribose-binding protei 71.9 33 0.0011 26.8 9.7 89 26-124 3-92 (271)
64 2fn9_A Ribose ABC transporter, 71.8 34 0.0012 26.8 10.5 89 25-123 3-92 (290)
65 3clk_A Transcription regulator 71.7 28 0.00096 27.4 9.3 138 25-177 9-153 (290)
66 3hno_A Pyrophosphate-dependent 71.6 2.8 9.4E-05 37.9 3.5 51 75-127 91-144 (419)
67 1rlk_A Hypothetical protein TA 71.5 3.6 0.00012 30.7 3.6 63 89-175 50-114 (117)
68 3snr_A Extracellular ligand-bi 71.1 5.6 0.00019 32.1 5.0 93 25-123 8-102 (362)
69 3h5l_A Putative branched-chain 71.0 3.6 0.00012 34.8 3.9 57 62-120 56-113 (419)
70 3j21_Z 50S ribosomal protein L 70.9 21 0.00071 25.2 7.5 43 84-127 27-71 (99)
71 3hsy_A Glutamate receptor 2; l 70.8 3.1 0.00011 34.9 3.5 109 63-177 35-146 (376)
72 3lop_A Substrate binding perip 70.6 22 0.00075 29.0 8.6 150 26-177 7-167 (364)
73 3sg0_A Extracellular ligand-bi 70.4 6.2 0.00021 32.3 5.2 94 24-123 27-122 (386)
74 4hwg_A UDP-N-acetylglucosamine 69.4 9.7 0.00033 33.0 6.5 53 68-123 73-126 (385)
75 3c3k_A Alanine racemase; struc 69.3 40 0.0014 26.5 12.5 125 25-163 9-135 (285)
76 4gnr_A ABC transporter substra 69.3 3.7 0.00013 33.6 3.6 62 63-126 50-112 (353)
77 3on1_A BH2414 protein; structu 69.1 20 0.00069 25.4 7.1 42 86-127 32-73 (101)
78 2fep_A Catabolite control prot 69.1 41 0.0014 26.6 12.7 124 25-162 17-143 (289)
79 2xzm_U Ribosomal protein L7AE 67.0 12 0.0004 28.2 5.7 44 84-127 36-80 (126)
80 2ioy_A Periplasmic sugar-bindi 67.0 44 0.0015 26.2 13.4 88 26-123 3-91 (283)
81 3l49_A ABC sugar (ribose) tran 66.4 45 0.0015 26.0 13.9 128 25-164 6-137 (291)
82 3g85_A Transcriptional regulat 66.1 14 0.00048 29.1 6.3 128 25-166 12-141 (289)
83 1t1j_A Hypothetical protein; s 66.0 3.5 0.00012 31.4 2.5 39 82-121 77-118 (125)
84 4f11_A Gamma-aminobutyric acid 65.9 3.5 0.00012 35.0 2.8 57 62-119 58-114 (433)
85 3e61_A Putative transcriptiona 65.8 45 0.0015 25.9 12.9 123 25-164 9-134 (277)
86 2x7x_A Sensor protein; transfe 65.6 52 0.0018 26.5 12.1 127 25-163 7-139 (325)
87 1kyq_A Met8P, siroheme biosynt 65.4 5.5 0.00019 33.8 4.0 63 88-165 106-172 (274)
88 3saj_A Glutamate receptor 1; r 65.3 13 0.00043 31.2 6.2 109 63-177 42-153 (384)
89 1xty_A PTH, peptidyl-tRNA hydr 65.1 5.7 0.00019 29.7 3.6 62 90-175 54-117 (120)
90 1gud_A ALBP, D-allose-binding 65.0 41 0.0014 26.5 9.0 90 26-123 3-93 (288)
91 3qek_A NMDA glutamate receptor 64.9 25 0.00084 29.2 7.9 55 63-119 40-99 (384)
92 2vk2_A YTFQ, ABC transporter p 64.3 52 0.0018 26.1 12.6 89 25-123 3-92 (306)
93 4evq_A Putative ABC transporte 63.5 23 0.00078 28.8 7.3 95 25-122 17-114 (375)
94 1jye_A Lactose operon represso 63.3 61 0.0021 26.5 12.6 127 25-164 62-191 (349)
95 2f48_A Diphosphate--fructose-6 63.0 7 0.00024 36.6 4.4 53 75-127 153-206 (555)
96 1dp4_A Atrial natriuretic pept 62.8 7.1 0.00024 32.9 4.2 56 62-119 46-106 (435)
97 1w41_A 50S ribosomal protein L 62.4 15 0.00053 25.9 5.4 41 86-127 30-72 (101)
98 2qh8_A Uncharacterized protein 62.1 40 0.0014 27.0 8.5 88 25-121 9-97 (302)
99 1tjy_A Sugar transport protein 61.5 62 0.0021 26.0 12.3 131 25-164 4-140 (316)
100 3l6u_A ABC-type sugar transpor 61.4 56 0.0019 25.5 12.9 91 25-125 9-100 (293)
101 3gbv_A Putative LACI-family tr 60.9 57 0.002 25.4 12.5 93 25-123 9-103 (304)
102 1pea_A Amidase operon; gene re 60.8 60 0.002 26.7 9.5 96 25-123 8-108 (385)
103 3v7e_A Ribosome-associated pro 60.2 7.8 0.00027 26.8 3.3 45 83-127 22-66 (82)
104 2zv3_A PTH, peptidyl-tRNA hydr 60.1 4.4 0.00015 30.1 2.1 63 89-175 48-112 (115)
105 2o20_A Catabolite control prot 60.0 67 0.0023 25.9 14.2 126 25-163 64-191 (332)
106 3hs3_A Ribose operon repressor 59.8 61 0.0021 25.4 9.9 123 25-167 11-137 (277)
107 2hqb_A Transcriptional activat 59.7 34 0.0012 27.8 7.7 96 76-176 51-149 (296)
108 3cpq_A 50S ribosomal protein L 59.7 21 0.00071 25.8 5.7 60 86-164 35-98 (110)
109 3eaf_A ABC transporter, substr 59.5 46 0.0016 27.5 8.6 111 63-177 51-168 (391)
110 3s99_A Basic membrane lipoprot 58.5 45 0.0015 28.7 8.6 132 25-165 27-162 (356)
111 2qu7_A Putative transcriptiona 58.3 64 0.0022 25.2 10.4 122 25-163 9-133 (288)
112 2q5c_A NTRC family transcripti 58.1 14 0.00049 29.2 5.0 37 78-122 132-168 (196)
113 1x92_A APC5045, phosphoheptose 58.0 13 0.00046 28.4 4.7 38 87-124 112-150 (199)
114 1ma3_A SIR2-AF2, transcription 58.0 10 0.00035 31.4 4.2 41 78-122 175-218 (253)
115 3kg2_A Glutamate receptor 2; I 57.8 18 0.00061 33.4 6.2 110 63-177 35-146 (823)
116 1m2k_A Silent information regu 57.7 12 0.00041 30.8 4.6 41 78-122 169-212 (249)
117 1yc5_A NAD-dependent deacetyla 57.6 12 0.00041 30.7 4.6 41 78-122 172-215 (246)
118 3om0_A Glutamate receptor, ion 57.1 7.4 0.00025 32.6 3.2 54 63-118 45-99 (393)
119 4a3s_A 6-phosphofructokinase; 56.9 16 0.00056 31.5 5.5 48 75-127 80-127 (319)
120 2xbl_A Phosphoheptose isomeras 56.1 25 0.00086 26.6 5.9 39 87-125 115-154 (198)
121 3miz_A Putative transcriptiona 55.9 6.9 0.00023 31.3 2.8 130 25-168 14-147 (301)
122 3qfa_C Thioredoxin; protein-pr 55.0 48 0.0016 22.7 7.0 45 32-86 14-58 (116)
123 1y5e_A Molybdenum cofactor bio 54.7 10 0.00035 29.3 3.5 71 92-175 18-97 (169)
124 2lbw_A H/ACA ribonucleoprotein 54.6 16 0.00056 26.9 4.5 42 86-127 34-76 (121)
125 3jyw_G 60S ribosomal protein L 54.4 18 0.00063 26.8 4.7 45 83-127 36-81 (113)
126 1rzw_A Protein AF2095(GR4); be 54.3 12 0.00041 28.3 3.7 75 79-178 38-114 (123)
127 3o1i_D Periplasmic protein TOR 54.1 76 0.0026 24.7 9.4 91 25-124 6-97 (304)
128 3brs_A Periplasmic binding pro 53.4 77 0.0026 24.6 11.8 92 25-123 6-99 (289)
129 2qyx_A Uncharacterized protein 52.6 9.6 0.00033 32.1 3.2 80 12-97 28-112 (238)
130 3dfz_A SIRC, precorrin-2 dehyd 52.6 13 0.00046 30.4 4.0 68 88-176 91-162 (223)
131 3v7q_A Probable ribosomal prot 52.3 18 0.00061 25.8 4.2 42 86-127 33-74 (101)
132 1dbq_A Purine repressor; trans 52.0 81 0.0028 24.4 12.1 139 25-177 8-154 (289)
133 2qv7_A Diacylglycerol kinase D 51.9 27 0.00093 29.4 6.0 76 11-98 8-90 (337)
134 2h0a_A TTHA0807, transcription 51.9 33 0.0011 26.6 6.2 135 27-177 2-147 (276)
135 1eiw_A Hypothetical protein MT 51.8 17 0.00057 26.8 4.1 44 82-127 34-82 (111)
136 2yva_A DNAA initiator-associat 51.7 32 0.0011 26.0 5.9 38 87-124 108-146 (196)
137 3mq4_A Mglur7, metabotropic gl 51.5 11 0.00037 33.1 3.5 55 63-118 70-145 (481)
138 1jdp_A NPR-C, atrial natriuret 51.5 11 0.00039 31.9 3.6 55 63-118 57-112 (441)
139 1tk9_A Phosphoheptose isomeras 50.3 24 0.00082 26.4 4.9 39 87-125 109-148 (188)
140 1pfk_A Phosphofructokinase; tr 49.8 15 0.00053 31.8 4.2 43 75-120 81-123 (320)
141 3en0_A Cyanophycinase; serine 49.7 9.3 0.00032 32.6 2.7 75 25-113 57-131 (291)
142 2i2w_A Phosphoheptose isomeras 49.4 29 0.00098 27.1 5.4 38 87-124 130-168 (212)
143 3trj_A Phosphoheptose isomeras 48.4 30 0.001 27.0 5.4 39 87-125 113-152 (201)
144 3iz5_f 60S ribosomal protein L 48.3 29 0.001 25.4 4.9 45 82-127 36-82 (112)
145 1zxx_A 6-phosphofructokinase; 48.2 17 0.00058 31.5 4.2 43 75-120 80-122 (319)
146 3kbq_A Protein TA0487; structu 48.2 12 0.00041 29.6 2.9 68 98-177 20-89 (172)
147 3dzc_A UDP-N-acetylglucosamine 48.1 19 0.00066 30.8 4.5 52 69-122 91-143 (396)
148 3k35_A NAD-dependent deacetyla 48.0 29 0.001 30.1 5.7 43 79-122 198-241 (318)
149 3h6g_A Glutamate receptor, ion 48.0 15 0.0005 30.6 3.7 38 80-119 63-100 (395)
150 1s5p_A NAD-dependent deacetyla 47.8 16 0.00056 29.7 3.9 44 79-123 159-203 (235)
151 2pju_A Propionate catabolism o 47.3 26 0.00088 28.7 5.0 40 76-123 142-181 (225)
152 3l4e_A Uncharacterized peptida 47.1 5.5 0.00019 32.0 0.8 33 76-114 69-101 (206)
153 1qpz_A PURA, protein (purine n 47.0 1.1E+02 0.0038 24.6 12.2 125 25-163 59-188 (340)
154 3sho_A Transcriptional regulat 46.9 27 0.00091 26.2 4.7 39 87-125 86-125 (187)
155 3efb_A Probable SOR-operon reg 46.8 50 0.0017 27.1 6.8 84 79-169 147-244 (266)
156 2e4u_A Metabotropic glutamate 45.7 23 0.00079 31.5 4.8 55 63-118 68-145 (555)
157 2fvy_A D-galactose-binding per 45.2 1.1E+02 0.0037 23.9 12.7 90 25-123 3-93 (309)
158 1pjq_A CYSG, siroheme synthase 45.0 48 0.0017 29.4 6.8 59 88-165 72-134 (457)
159 2h4a_A YRAM (HI1655); perplasm 44.9 9.4 0.00032 32.3 2.0 61 61-126 32-93 (325)
160 2xhz_A KDSD, YRBH, arabinose 5 44.0 32 0.0011 25.6 4.8 39 87-125 95-134 (183)
161 3gyb_A Transcriptional regulat 43.9 79 0.0027 24.5 7.2 121 25-163 6-129 (280)
162 3u5e_c L32, RP73, YL38, 60S ri 43.8 20 0.00068 25.7 3.4 44 83-127 33-78 (105)
163 2kg4_A Growth arrest and DNA-d 43.5 22 0.00076 28.3 3.8 91 80-179 43-151 (165)
164 1q7s_A BIT1, protein CGI-147; 43.3 7.3 0.00025 28.9 0.9 61 91-175 52-114 (117)
165 1m3s_A Hypothetical protein YC 43.0 32 0.0011 25.8 4.6 39 87-125 78-117 (186)
166 3izc_H 60S ribosomal protein R 42.9 57 0.002 27.7 6.5 73 87-177 146-220 (256)
167 2khz_A C-MYC-responsive protei 42.6 71 0.0024 24.4 6.6 46 77-124 68-113 (165)
168 3hbm_A UDP-sugar hydrolase; PS 42.3 22 0.00074 29.8 3.8 65 79-166 175-239 (282)
169 3ot5_A UDP-N-acetylglucosamine 42.1 25 0.00085 30.3 4.3 53 69-123 94-147 (403)
170 3sm9_A Mglur3, metabotropic gl 41.8 26 0.00088 30.8 4.4 55 63-118 67-144 (479)
171 3cs3_A Sugar-binding transcrip 41.7 1.1E+02 0.0036 23.8 7.7 119 25-163 9-129 (277)
172 3ks9_A Mglur1, metabotropic gl 41.2 30 0.001 30.5 4.8 56 63-118 75-156 (496)
173 3u31_A SIR2A, transcriptional 41.0 48 0.0016 28.2 5.8 43 78-122 208-251 (290)
174 1vim_A Hypothetical protein AF 40.5 35 0.0012 26.3 4.6 38 88-125 89-127 (200)
175 3fxa_A SIS domain protein; str 39.9 25 0.00084 27.0 3.6 39 87-125 91-130 (201)
176 1c9k_A COBU, adenosylcobinamid 39.3 23 0.00078 28.0 3.3 35 92-127 2-36 (180)
177 2pbq_A Molybdenum cofactor bio 38.9 8 0.00027 30.3 0.6 68 98-176 22-94 (178)
178 4ddd_A Immunogenic protein; ss 38.4 57 0.0019 27.2 5.9 93 78-177 185-284 (327)
179 3ezw_A Glycerol kinase; glycer 38.4 1.1E+02 0.0036 27.5 8.0 53 68-122 382-435 (526)
180 2hig_A 6-phospho-1-fructokinas 37.6 19 0.00065 33.2 2.9 52 76-127 177-229 (487)
181 3ckm_A YRAM (HI1655), LPOA; pe 36.7 17 0.00058 29.7 2.3 61 61-126 34-95 (327)
182 3imk_A Putative molybdenum car 36.6 45 0.0015 26.4 4.6 79 88-176 73-154 (158)
183 1fy2_A Aspartyl dipeptidase; s 36.5 11 0.00038 30.4 1.1 29 80-114 73-101 (229)
184 3pki_A NAD-dependent deacetyla 36.4 30 0.001 30.7 3.9 44 79-123 198-242 (355)
185 3o8l_A 6-phosphofructokinase, 36.3 20 0.00069 34.8 3.0 50 71-120 472-525 (762)
186 2zkr_f 60S ribosomal protein L 36.1 47 0.0016 28.4 4.9 77 82-176 145-223 (266)
187 3riy_A NAD-dependent deacetyla 35.6 43 0.0015 28.0 4.6 43 79-122 204-247 (273)
188 3cvj_A Putative phosphoheptose 34.8 42 0.0014 26.6 4.3 37 87-123 107-144 (243)
189 3ctp_A Periplasmic binding pro 34.8 1.8E+02 0.006 23.3 11.2 121 25-163 61-183 (330)
190 4gpa_A Glutamate receptor 4; P 34.3 1.8E+02 0.0062 23.3 8.6 84 90-177 69-155 (389)
191 1z0s_A Probable inorganic poly 34.2 59 0.002 27.5 5.3 21 26-49 31-51 (278)
192 3abz_A Beta-glucosidase I; gly 33.5 56 0.0019 31.9 5.6 41 79-120 565-620 (845)
193 3sho_A Transcriptional regulat 33.1 97 0.0033 23.0 5.9 46 78-125 30-77 (187)
194 1di6_A MOGA, molybdenum cofact 33.1 21 0.00071 28.6 2.2 70 91-175 7-91 (195)
195 1uf3_A Hypothetical protein TT 32.2 94 0.0032 23.2 5.8 11 88-98 32-42 (228)
196 1b93_A Protein (methylglyoxal 31.5 1.1E+02 0.0038 23.6 6.1 43 76-118 70-117 (152)
197 4a17_F RPL7A, 60S ribosomal pr 31.4 71 0.0024 27.1 5.3 72 87-177 139-213 (255)
198 3u5c_M 40S ribosomal protein S 31.3 18 0.00062 28.1 1.4 48 80-127 48-98 (143)
199 3ll3_A Gluconate kinase; xylul 31.1 1.5E+02 0.0051 26.3 7.7 52 68-122 374-426 (504)
200 4a18_G RPL30; ribosome, eukary 31.0 36 0.0012 24.2 3.0 41 86-127 36-78 (104)
201 2bon_A Lipid kinase; DAG kinas 30.4 79 0.0027 26.5 5.5 14 87-100 81-94 (332)
202 2e0q_A Thioredoxin; electron t 30.2 1.1E+02 0.0036 19.4 5.3 45 65-114 22-66 (104)
203 3etn_A Putative phosphosugar i 30.1 64 0.0022 25.4 4.6 39 87-125 105-146 (220)
204 3s40_A Diacylglycerol kinase; 29.6 43 0.0015 27.8 3.7 19 81-100 57-75 (304)
205 3oxn_A Putative transcriptiona 29.5 26 0.00089 26.3 2.1 70 16-99 10-79 (241)
206 3jzd_A Iron-containing alcohol 29.2 86 0.0029 27.0 5.6 58 64-123 63-122 (358)
207 3cf4_G Acetyl-COA decarboxylas 29.1 95 0.0033 23.5 5.3 41 78-119 25-67 (170)
208 2b1k_A Thiol:disulfide interch 29.1 1.5E+02 0.0053 21.0 7.6 103 65-178 57-162 (168)
209 3hww_A 2-succinyl-5-enolpyruvy 29.0 86 0.003 28.2 5.8 57 79-159 270-328 (556)
210 1byk_A Protein (trehalose oper 29.0 1.9E+02 0.0064 21.9 11.3 136 25-177 3-144 (255)
211 3l7n_A Putative uncharacterize 28.7 58 0.002 25.9 4.2 14 88-101 45-58 (236)
212 1jx6_A LUXP protein; protein-l 28.6 2.2E+02 0.0076 22.6 12.5 90 25-122 44-137 (342)
213 1vmd_A MGS, methylglyoxal synt 28.4 1.2E+02 0.0042 24.2 6.0 43 76-118 86-133 (178)
214 2iz6_A Molybdenum cofactor car 28.3 21 0.00071 28.2 1.4 70 84-177 104-174 (176)
215 3lut_A Voltage-gated potassium 28.1 69 0.0024 27.3 4.8 38 145-183 308-348 (367)
216 3qxc_A Dethiobiotin synthetase 28.0 53 0.0018 26.8 3.9 89 79-178 123-216 (242)
217 1jeo_A MJ1247, hypothetical pr 27.9 81 0.0028 23.3 4.7 37 88-124 82-119 (180)
218 2y7p_A LYSR-type regulatory pr 27.7 24 0.00081 26.5 1.5 66 18-97 1-66 (218)
219 1uc8_A LYSX, lysine biosynthes 27.6 57 0.002 25.4 3.9 33 92-124 2-34 (280)
220 3m9j_A Thioredoxin; oxidoreduc 27.2 95 0.0033 20.0 4.5 26 65-90 26-51 (105)
221 2pu9_C TRX-F, thioredoxin F-ty 27.2 1.4E+02 0.0046 19.7 6.1 23 65-87 30-52 (111)
222 1rq2_A Cell division protein F 27.2 50 0.0017 29.3 3.8 44 76-120 84-131 (382)
223 1iow_A DD-ligase, DDLB, D-ALA\ 27.2 63 0.0022 25.7 4.2 32 92-123 5-43 (306)
224 1t7s_A BAG-1 cochaperone; stru 27.1 25 0.00084 27.4 1.5 11 90-100 1-11 (137)
225 3mvn_A UDP-N-acetylmuramate:L- 27.1 30 0.001 26.1 2.1 112 36-175 46-161 (163)
226 1t5b_A Acyl carrier protein ph 26.8 44 0.0015 25.0 3.0 21 91-111 4-26 (201)
227 1y5e_A Molybdenum cofactor bio 26.3 46 0.0016 25.5 3.0 32 69-101 51-85 (169)
228 3g25_A Glycerol kinase; IDP007 26.2 2.1E+02 0.0072 25.3 7.8 52 68-121 384-436 (501)
229 2pjk_A 178AA long hypothetical 25.7 22 0.00076 27.8 1.1 67 98-175 37-106 (178)
230 2xci_A KDO-transferase, 3-deox 25.5 1.2E+02 0.004 25.5 5.7 27 90-116 225-251 (374)
231 2g2c_A Putative molybdenum cof 25.1 51 0.0018 25.1 3.1 33 69-101 49-82 (167)
232 2p3r_A Glycerol kinase; glycer 24.9 2.6E+02 0.0089 24.8 8.1 52 68-121 381-433 (510)
233 2xhz_A KDSD, YRBH, arabinose 5 24.8 63 0.0022 24.0 3.5 45 78-124 39-85 (183)
234 1ofu_A FTSZ, cell division pro 24.6 62 0.0021 27.7 3.8 43 77-120 85-131 (320)
235 2dml_A Protein disulfide-isome 24.5 34 0.0012 23.5 1.8 21 157-177 105-125 (130)
236 3nek_A Nitrogen repressor-like 24.3 58 0.002 27.3 3.5 79 13-97 29-112 (238)
237 2nxf_A Putative dimetal phosph 24.0 1.1E+02 0.0038 23.9 5.0 36 87-122 50-95 (322)
238 3fxa_A SIS domain protein; str 23.9 2.3E+02 0.0079 21.2 7.6 46 78-125 35-82 (201)
239 3zyz_A Beta-D-glucoside glucoh 23.9 93 0.0032 29.6 5.2 40 80-120 420-479 (713)
240 3pzy_A MOG; ssgcid, seattle st 23.8 57 0.0019 25.0 3.1 35 78-112 56-90 (164)
241 2d4w_A Glycerol kinase; alpha 23.6 3.3E+02 0.011 24.0 8.6 53 68-122 383-436 (504)
242 3etn_A Putative phosphosugar i 23.3 1.6E+02 0.0056 22.9 5.9 48 78-126 45-97 (220)
243 3o8l_A 6-phosphofructokinase, 23.2 44 0.0015 32.5 2.8 33 75-107 96-128 (762)
244 3tco_A Thioredoxin (TRXA-1); d 23.1 62 0.0021 21.0 2.9 22 65-86 27-48 (109)
245 2yvt_A Hypothetical protein AQ 22.9 1.6E+02 0.0054 22.6 5.7 14 87-100 31-44 (260)
246 2q8u_A Exonuclease, putative; 22.7 1.2E+02 0.0042 24.9 5.2 10 88-97 61-70 (336)
247 2pbq_A Molybdenum cofactor bio 22.6 56 0.0019 25.3 2.9 33 70-102 48-82 (178)
248 3m2p_A UDP-N-acetylglucosamine 22.5 1.5E+02 0.0051 23.5 5.6 45 78-123 53-110 (311)
249 3l0q_A Xylulose kinase; xlylul 22.5 1.1E+02 0.0037 27.6 5.2 52 68-122 423-475 (554)
250 3afo_A NADH kinase POS5; alpha 22.3 1.6E+02 0.0056 25.9 6.2 12 87-98 113-124 (388)
251 2ioj_A Hypothetical protein AF 22.3 1E+02 0.0034 22.4 4.1 44 76-121 61-105 (139)
252 2xw6_A MGS, methylglyoxal synt 22.3 1.4E+02 0.0048 22.6 5.0 43 76-118 62-109 (134)
253 3flu_A DHDPS, dihydrodipicolin 22.3 3.3E+02 0.011 22.5 8.0 76 34-117 56-136 (297)
254 3ca8_A Protein YDCF; two domai 22.3 88 0.003 26.0 4.2 12 88-99 36-47 (266)
255 2iss_D Glutamine amidotransfer 22.1 1.5E+02 0.005 22.9 5.3 63 12-101 8-70 (208)
256 2is8_A Molybdopterin biosynthe 22.1 59 0.002 24.7 2.9 45 69-113 41-87 (164)
257 3qbe_A 3-dehydroquinate syntha 22.1 2.1E+02 0.007 24.9 6.7 91 25-123 44-138 (368)
258 3i33_A Heat shock-related 70 k 22.0 1.3E+02 0.0043 25.3 5.2 25 87-113 350-374 (404)
259 3exr_A RMPD (hexulose-6-phosph 21.9 3E+02 0.01 21.8 8.9 20 153-172 112-131 (221)
260 2pjk_A 178AA long hypothetical 21.8 61 0.0021 25.2 3.0 43 70-113 61-106 (178)
261 1uuy_A CNX1, molybdopterin bio 21.8 65 0.0022 24.5 3.1 45 69-113 50-96 (167)
262 2vyo_A ECU11_0510, chitooligos 21.3 69 0.0024 25.9 3.3 27 96-122 34-62 (254)
263 1o2d_A Alcohol dehydrogenase, 21.3 1.8E+02 0.0061 24.8 6.1 76 25-112 41-122 (371)
264 3ib7_A ICC protein; metallopho 21.2 1.2E+02 0.0042 24.1 4.8 39 88-126 66-112 (330)
265 1vlj_A NADH-dependent butanol 21.1 1E+02 0.0035 26.7 4.6 77 25-111 44-124 (407)
266 2f5x_A BUGD; periplasmic bindi 21.0 3.6E+02 0.012 22.4 8.8 87 79-178 176-262 (312)
267 2hpv_A FMN-dependent NADH-azor 21.0 75 0.0026 24.1 3.3 20 91-110 4-26 (208)
268 3bmx_A Uncharacterized lipopro 20.8 1.5E+02 0.0052 27.7 5.9 44 80-124 499-564 (642)
269 2a5l_A Trp repressor binding p 20.8 73 0.0025 23.8 3.2 22 90-112 7-28 (200)
270 3dqp_A Oxidoreductase YLBE; al 20.8 1.5E+02 0.005 22.3 4.9 49 78-127 54-111 (219)
271 3eb2_A Putative dihydrodipicol 20.7 3.5E+02 0.012 22.4 7.7 78 34-119 53-135 (300)
272 2vaw_A FTSZ, cell division pro 20.5 81 0.0028 28.0 3.8 43 77-120 85-131 (394)
273 3kbq_A Protein TA0487; structu 20.5 52 0.0018 25.8 2.3 30 79-109 54-83 (172)
274 2yxb_A Coenzyme B12-dependent 20.4 2.3E+02 0.0078 21.3 6.0 12 2-13 3-14 (161)
275 2x41_A Beta-glucosidase; hydro 20.4 1.2E+02 0.0042 28.7 5.2 38 80-118 437-494 (721)
276 4fyk_A Deoxyribonucleoside 5'- 20.3 2.8E+02 0.0096 21.3 6.5 49 73-123 55-103 (152)
277 3hl0_A Maleylacetate reductase 20.1 1.4E+02 0.0047 25.6 5.1 43 80-124 79-121 (353)
278 1s3l_A Hypothetical protein MJ 20.1 1.3E+02 0.0043 23.1 4.5 10 152-161 115-124 (190)
279 4e1j_A Glycerol kinase; struct 20.1 3.6E+02 0.012 23.9 8.1 52 68-122 403-458 (520)
280 2vxy_A FTSZ, cell division pro 20.0 85 0.0029 27.8 3.8 42 78-120 86-131 (382)
No 1
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=1.8e-49 Score=347.87 Aligned_cols=128 Identities=34% Similarity=0.534 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 24 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT 103 (187)
++|+++++||||+.++|.+|++.|+++|| +++++|||||||++||+|+++|| +++|+||||||+|||||
T Consensus 156 ~~kv~~vsQTT~s~~~~~~iv~~L~~r~p----------~~~~~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT 224 (297)
T 3dnf_A 156 HERVGIVAQTTQNEEFFKEVVGEIALWVK----------EVKVINTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNT 224 (297)
T ss_dssp CSEEEEEECTTCCHHHHHHHHHHHHHHSS----------EEEEECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHH
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHHhCC----------CCCCCCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchh
Confidence 47999999999999999999999988543 46689999999999999999999 58999999999999999
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhccH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~~~ 180 (187)
+||+|||++.|+++|||++++||++ +|| .++.+||||||||||+|||++|+++|.++..
T Consensus 225 ~rL~eia~~~~~~ty~Ie~~~el~~-----------------~wl-~~~~~VGITAGASTP~~li~eVi~~l~~~~~ 283 (297)
T 3dnf_A 225 RRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKRVGISAGASTPDWIIEQVKSRIQEICE 283 (297)
T ss_dssp HHHHHHHHHHCSSEEEESSGGGCCG-----------------GGG-TTCSEEEEEECTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCEEEeCChHHCCH-----------------HHh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999997 999 6999999999999999999999999998743
No 2
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=2.6e-49 Score=350.72 Aligned_cols=130 Identities=33% Similarity=0.513 Sum_probs=121.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh
Q 037064 23 DLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 23 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN 102 (187)
+++|+++++||||+.++|.+|++.|+++|+...+ ..+|||||||++||+|+++|| +++|+||||||+||||
T Consensus 169 ~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~--------~~~ntIC~AT~~RQ~av~~lA-~~vD~miVVGg~nSSN 239 (328)
T 3szu_A 169 NEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVG--------PRKDDICYATTNRQEAVRALA-EQAEVVLVVGSKNSSN 239 (328)
T ss_dssp CTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBC--------CSSCSCCHHHHHHHHHHHHHH-HHCSEEEEECCTTCHH
T ss_pred CCCeEEEEEecCCcHHHHHHHHHHHHHhCccccc--------CCCCCcCHHHHHHHHHHHHHH-HhCCEEEEeCCCCCch
Confidence 5679999999999999999999999998776543 348999999999999999999 5899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhcc
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIK 179 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~~ 179 (187)
|+||+|||++.|+++|||++++||++ +|| .++.+||||||||||+|||++|+++|.++.
T Consensus 240 T~rL~eia~~~g~~ty~Ie~~~el~~-----------------~wl-~g~~~VGITAGASTP~~lieeVi~~l~~~~ 298 (328)
T 3szu_A 240 SNRLAELAQRMGKRAFLIDDAKDIQE-----------------EWV-KEVKCVGVTAGASAPDILVQNVVARLQQLG 298 (328)
T ss_dssp HHHHHHHHHHTTCEEEEESSGGGCCH-----------------HHH-TTCSEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEeCChHHCCH-----------------HHh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999997 999 699999999999999999999999999863
No 3
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=92.91 E-value=1.7 Score=37.86 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=79.4
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
.+.+.|.-|+-...=|..++++++ +=.-+|++|-++=.-..-+.-.|...+-+++.|++++|++.
T Consensus 88 gl~iiDATCP~V~Kvh~~v~~~~~-~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~-------------- 152 (297)
T 3dnf_A 88 GLKVIDATCPYVKAVHEAVCQLTR-EGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE-------------- 152 (297)
T ss_dssp TCEEEECCCHHHHHHHHHHHHHHH-TTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG--------------
T ss_pred CCEEEeCCCcchHHHHHHHHHHHh-CCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh--------------
Confidence 467899999999999999999994 78899999999988888888777432236999999999853
Q ss_pred hhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 143 EKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 143 ~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
|+ ...+|++.+=+--+-+-..+++++|.+
T Consensus 153 -----l~-~~~kv~~vsQTT~s~~~~~~iv~~L~~ 181 (297)
T 3dnf_A 153 -----AL-KHERVGIVAQTTQNEEFFKEVVGEIAL 181 (297)
T ss_dssp -----GG-GCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred -----cC-CCCcEEEEEecCCcHHHHHHHHHHHHH
Confidence 32 357899999999999999999999975
No 4
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=92.79 E-value=0.37 Score=35.93 Aligned_cols=73 Identities=19% Similarity=0.420 Sum_probs=55.9
Q ss_pred cCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-C-CCcEEEEeeCCCC
Q 037064 87 EKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-K-GQITIGVTAGAST 163 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~IGITAGAST 163 (187)
+++-++|+-++-.... .++|-.+|++.++|.+++.+-.+|- .|+- . +...|+|+.+.-.
T Consensus 44 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG------------------~a~G~~~~~~~vaI~d~g~a 105 (120)
T 1vq8_F 44 GSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLG------------------HAAGLEVGSAAAAVTDAGEA 105 (120)
T ss_dssp TCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHH------------------HHTTCSSCCSEEEESSCSSC
T ss_pred CCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH------------------HHhCCCCCeEEEEEecCchH
Confidence 5677777766655444 6899999999999988999988885 4442 1 4678999977655
Q ss_pred cHHHHHHHHHHHHhc
Q 037064 164 PDKAIEGVLKKVFEI 178 (187)
Q Consensus 164 P~~lI~eVi~~l~~~ 178 (187)
+.+++++.+.++.+
T Consensus 106 -~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 106 -DADVEDIADKVEEL 119 (120)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhc
Confidence 88899999888765
No 5
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=91.94 E-value=3.8 Score=33.59 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=72.4
Q ss_pred CeEEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTT-MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSN 102 (187)
..||++.-.+ +.-.-|.++...+.+...+ .| -++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 131 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-- 131 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSC--
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--
Confidence 4688887653 3445567777777654332 22 22333332 22233443 455666578999999886544
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHH
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
...+.+++++.++|...++...+-.....+..-... +... ....+..|.++||+.+|......
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a-~~~L~~~G~~~I~~i~~~~~~~~ 195 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNA-VAELINAGHQEIAFLTGSMDSPT 195 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHH-HHHHHHTTCCSEEEECCCTTCHH
T ss_pred hHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHH-HHHHHHCCCCEEEEEeCCCCCcc
Confidence 356888888888999888764322111111111111 1211 11222348899999998644333
No 6
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=91.27 E-value=0.69 Score=34.35 Aligned_cols=76 Identities=11% Similarity=0.294 Sum_probs=55.8
Q ss_pred hhhcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-C-CCcEEEEeeC
Q 037064 84 LVEEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-K-GQITIGVTAG 160 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~IGITAG 160 (187)
|-++++-++|+-.+-.... .++|-.+|++.++|.+++.+-.+|- .|+- . +...|+|+.+
T Consensus 39 l~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG------------------~a~G~~~~~~~vaI~d~ 100 (119)
T 1rlg_A 39 VERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLG------------------RAVGIEVPCASAAIINE 100 (119)
T ss_dssp HTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEEEC
T ss_pred HHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHH------------------HHhCCCCCeEEEEEecC
Confidence 3335677777766655443 6999999999999988899988885 4442 1 4678999987
Q ss_pred CCCcHHHHHHHHHHHHhc
Q 037064 161 ASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 161 ASTP~~lI~eVi~~l~~~ 178 (187)
... +.+++.+.+.++++
T Consensus 101 g~a-~~~~~~l~~~~~~l 117 (119)
T 1rlg_A 101 GEL-RKELGSLVEKIKGL 117 (119)
T ss_dssp GGG-HHHHHHHHHHHHTT
T ss_pred chH-HHHHHHHHHHHHHh
Confidence 544 57788888887765
No 7
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=90.50 E-value=5.8 Score=31.86 Aligned_cols=131 Identities=5% Similarity=0.008 Sum_probs=71.1
Q ss_pred CeEEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCC
Q 037064 25 VKVGIANQTT----MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~n 99 (187)
..||++.-.. +.-.-|..+.+-+++...+ .| -++.++++- ...++|. .+..|....+|.+|+++...
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-----YSTRMTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-----CEEEECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 4688887652 3444567777777654332 22 123333221 2223433 34445446899999988654
Q ss_pred ChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 100 SSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
+. .+++.+.+.|+|...|+...+-+....+..-... +.... +..+..|.++||+.+|.......
T Consensus 95 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~-~~L~~~G~~~I~~i~~~~~~~~~ 159 (305)
T 3huu_A 95 DD---PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLT-QYLYHLGHRHILFLQESGHYAVT 159 (305)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHH-HHHHHTTCCSEEEEEESSCBHHH
T ss_pred Cc---HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHH-HHHHHCCCCeEEEEcCCcccchh
Confidence 32 4566667889999999876532221112111111 22222 12222488999999987655443
No 8
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=90.36 E-value=2.9 Score=33.55 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=68.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
..||++. .+.-.-|..+.+-+++...+ .| -++.++++--.. +-.+.+..|....+|.+|+++...+.
T Consensus 13 ~~Igvi~--~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (289)
T 3k9c_A 13 RLLGVVF--ELQQPFHGDLVEQIYAAATR-RG-----YDVMLSAVAPSR--AEKVAVQALMRERCEAAILLGTRFDT--- 79 (289)
T ss_dssp CEEEEEE--ETTCHHHHHHHHHHHHHHHH-TT-----CEEEEEEEBTTB--CHHHHHHHHTTTTEEEEEEETCCCCH---
T ss_pred CEEEEEE--ecCCchHHHHHHHHHHHHHH-CC-----CEEEEEeCCCCH--HHHHHHHHHHhCCCCEEEEECCCCCH---
Confidence 4799988 55666688888888764333 22 122322221111 12344556655689999999876544
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP 164 (187)
..++.+.+ |.|...|+...+-.....+..-... +.... +..+..|.++||+.+|...+
T Consensus 80 ~~~~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~~~I~~i~~~~~~ 138 (289)
T 3k9c_A 80 DELGALAD-RVPALVVARASGLPGVGAVRGDDVAGITLAV-DHLTELGHRNIAHIDGADAP 138 (289)
T ss_dssp HHHHHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHHHHH-HHHHHTTCCSEEEECCTTST
T ss_pred HHHHHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHHHHH-HHHHHCCCCcEEEEeCCCCc
Confidence 33444445 8999999875432211111111111 12211 11222488999999987655
No 9
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=89.74 E-value=0.84 Score=34.09 Aligned_cols=72 Identities=14% Similarity=0.349 Sum_probs=53.3
Q ss_pred cCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-C-CCcEEEEeeCCCC
Q 037064 87 EKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-K-GQITIGVTAGAST 163 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~IGITAGAST 163 (187)
+++-++|+-.+-.... .++|-.+|++.++|.+++.+-.+|- .|+- . ++..|+||-+...
T Consensus 44 gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG------------------~a~G~~~~~s~vaI~d~g~a 105 (120)
T 1xbi_A 44 GIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG------------------KAAGLEVAASSVAIINEGDA 105 (120)
T ss_dssp TCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEEECSCH
T ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHH------------------HHhCCCCCEEEEEEeccchH
Confidence 5677777666655443 6899999999999988899998885 4542 1 4678999987754
Q ss_pred cHHHHHHHHHHHHhc
Q 037064 164 PDKAIEGVLKKVFEI 178 (187)
Q Consensus 164 P~~lI~eVi~~l~~~ 178 (187)
-. +.++++.++.+
T Consensus 106 ~~--l~~l~~~i~~l 118 (120)
T 1xbi_A 106 EE--LKVLIEKVNVL 118 (120)
T ss_dssp HH--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHh
Confidence 33 78888887765
No 10
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=89.56 E-value=1.1 Score=34.34 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=57.4
Q ss_pred cCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc--CCCcEEEEee-CCC
Q 037064 87 EKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP--KGQITIGVTA-GAS 162 (187)
Q Consensus 87 ~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~IGITA-GAS 162 (187)
+++-++|+-++-... -..+|-.+|++.|+|.+++.+-.+|- .|.- .++..|+|+- |.|
T Consensus 47 gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG------------------~a~G~~~~~s~vaI~d~~~s 108 (134)
T 2ale_A 47 GISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALG------------------RACGVSRPVIAASITTNDAS 108 (134)
T ss_dssp TCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEECCTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHH------------------HHhCCCCCeEEEEEEcCChH
Confidence 456677776666554 37889999999999999999888884 3441 1234789884 668
Q ss_pred CcHHHHHHHHHHHHhccHhh
Q 037064 163 TPDKAIEGVLKKVFEIKREE 182 (187)
Q Consensus 163 TP~~lI~eVi~~l~~~~~~~ 182 (187)
.=..+++++.+.++.+..+|
T Consensus 109 ~~~~l~~~i~~~~~~~~~~~ 128 (134)
T 2ale_A 109 AIKTQIYAVKDKIETLLILE 128 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhHHHh
Confidence 88889999988887765443
No 11
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=88.70 E-value=7.6 Score=30.63 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=72.1
Q ss_pred CeEEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCC
Q 037064 25 VKVGIANQTT----MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~n 99 (187)
..||++.-.+ +.-.-|..+.+.+.+...+ .| -++.++++- ...++|.. +..+....+|.+|+++...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-----YALYMSTGE--TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-----CEEEECCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-----CEEEEEeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 5788887763 4445577777777664333 22 223333322 22334433 3344446899999987654
Q ss_pred ChhhHHHHHHHHHhCCCeEEeCCCCCCCC-CCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHHH
Q 037064 100 SSNTSSLQVIAEDRGIPSYWIDSEKRIGP-GNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKAI 168 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie~~~eL~~-~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~lI 168 (187)
+. .+++.+.+.|+|...++...+-.. ...+..-... +....+ ..+..|.++||+.+|........
T Consensus 81 ~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~-~L~~~G~~~i~~i~~~~~~~~~~ 147 (292)
T 3k4h_A 81 ND---RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAE-YLISLGHKQIAFIGGGSDLLVTR 147 (292)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHH-HHHHTTCCCEEEEESCTTBHHHH
T ss_pred Ch---HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHH-HHHHCCCceEEEEeCcccchhHH
Confidence 32 566777788999999987643221 1112111111 222111 12224888999999876544433
No 12
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=88.67 E-value=1.3 Score=33.20 Aligned_cols=75 Identities=15% Similarity=0.382 Sum_probs=55.3
Q ss_pred hcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-C-CCcEEEEeeCCC
Q 037064 86 EEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-K-GQITIGVTAGAS 162 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~IGITAGAS 162 (187)
++++-++|+-.+-.... .++|-.+|++.++|.+++.+-.+|- .|+- . ++..|+||.+.-
T Consensus 42 ~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG------------------~a~G~~~~~~~vaI~d~g~ 103 (124)
T 2fc3_A 42 RGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLG------------------EAAGIEVAAASVAIIEPGD 103 (124)
T ss_dssp TTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEEECGG
T ss_pred cCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH------------------HHhCCCCCEEEEEEECcch
Confidence 35677777776655544 6899999999999988999988885 4442 1 468899997654
Q ss_pred CcHHHHHHHHHHHHhcc
Q 037064 163 TPDKAIEGVLKKVFEIK 179 (187)
Q Consensus 163 TP~~lI~eVi~~l~~~~ 179 (187)
. +.+++++.+.+..+.
T Consensus 104 a-~~~~~~l~~~~~~l~ 119 (124)
T 2fc3_A 104 A-ETLVREIVEKVKELR 119 (124)
T ss_dssp G-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhH
Confidence 3 677888888877654
No 13
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=88.61 E-value=5.1 Score=32.11 Aligned_cols=130 Identities=9% Similarity=0.086 Sum_probs=69.8
Q ss_pred CeEEEEEcC---CCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHH-HHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQT---TMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAV-YKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQT---T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av-~~La~~~~D~miVVGG~nS 100 (187)
..||++.-. .+.-.-|.++...+++...+ .| -++.++++ .. .+++..+ ..|....+|.+|+++...+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RG-----LDLLLIPD--EP-GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TT-----CEEEEEEE--CT-TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHH-CC-----CEEEEEeC--CC-hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 468877652 34455677787777664333 22 22333322 11 2333333 3444458999999987654
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
. ..++.+.+.|+|...|+...+-.....+..-... +.... .-.+..|.++||+.+|.......
T Consensus 78 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~~~I~~i~~~~~~~~~ 141 (294)
T 3qk7_A 78 D---FRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAV-KRLLELGHQRIAFVSTDARISYV 141 (294)
T ss_dssp C---HHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHHH-HHHHHTTCCCEEEEEESSCCHHH
T ss_pred h---HHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHHH-HHHHHCCCceEEEEeCCcccchH
Confidence 3 4556666889999999875322221111111111 12221 12222488999999987654443
No 14
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.19 E-value=8.9 Score=30.81 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|..+.+.+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...+. .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (313)
T 3m9w_A 3 VKIGMAIDD-LRLERWQKDRDIFVKKAES-LG-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQV-L 72 (313)
T ss_dssp CEEEEEESC-CSSSTTHHHHHHHHHHHHH-TS-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-C
T ss_pred cEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-h
Confidence 367777654 3333456666666553222 22 22333332 2223333 44555655789999998864433 3
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCC-Ccchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPG-NKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~-~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
..+++.+.+.|+|...++...+-... ..+..-... +....+.-.-..|.++||+.+|...-.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~ 138 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNA 138 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHH
T ss_pred HHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccH
Confidence 45666677889999999875432211 112111111 22222111101378899999886554443
No 15
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=87.79 E-value=8.2 Score=29.98 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=69.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcC-CCEEEEEcCCCChhh
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEK-IDLILVVGGWNSSNT 103 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~-~D~miVVGG~nSSNT 103 (187)
+||++.-.. .-.-|..+.+-+++...+ .| -++.++++-.....++| +.++.|.... +|.+|+.+. ++...
T Consensus 2 ~Ig~i~~~~-~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~-~~~~~ 73 (276)
T 3ksm_A 2 KLLLVLKGD-SNAYWRQVYLGAQKAADE-AG-----VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN-SAEDL 73 (276)
T ss_dssp EEEEECSCS-SSTHHHHHHHHHHHHHHH-HT-----CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS-STTTT
T ss_pred eEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC-CHHHH
Confidence 567776543 334566777777654333 22 22333332112233333 4566666667 999998875 34445
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCC-Ccchhhhhc-hhhhhh--hccccC--CCcEEEEeeCCCCcHH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPG-NKMAYKLMH-GELVEK--ENWLPK--GQITIGVTAGASTPDK 166 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~-~~~~~~~~~-~~~~~~--~~wl~~--~~~~IGITAGASTP~~ 166 (187)
...++.+.+.|+|...+++..+-... ..+..-... +....+ .+.+ . |.++||+.+|...-..
T Consensus 74 ~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~~~G~~~i~~i~~~~~~~~ 141 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRAGNAS 141 (276)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCTTCHH
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhc-CcCCCceEEEEEcCCCchh
Confidence 56667777889999999765432210 111111111 222111 1122 2 7899999998644333
No 16
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=86.97 E-value=9.7 Score=29.93 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCCh--
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSS-- 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSS-- 101 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTY-ISDYIFPSIIRGIESYLSE-QG-----YSMLLTST--NNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESC-SSSTTHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCC-CCchHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 478888765 3444577777777664333 22 22333322 22234443 4445555689999998865441
Q ss_pred hhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
....+++.+.+.|+|...++...+-.....+..-... +....+ ..+..|.++||+..|...
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~-~L~~~G~~~i~~i~~~~~ 148 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAE-HLLSLGHTHMMGIFKADD 148 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHH-HHHHTTCCSEEEEEESSS
T ss_pred CcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHH-HHHHCCCCcEEEEcCCCC
Confidence 3445666677889999999865332111111111111 122211 112247889999888655
No 17
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=86.59 E-value=9.7 Score=29.56 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.... .-.-|..+.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+.+.... +
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~- 71 (272)
T 3o74_A 3 RTLGFILPDL-ENPSYARIAKQLEQGARA-RG-----YQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPP-E- 71 (272)
T ss_dssp CEEEEEESCT-TCHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S-
T ss_pred eEEEEEeCCC-cChhHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccc-c-
Confidence 4688887653 445677787777764333 22 22333322 12233443 344555568999998876422 2
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
...++.+.+.|+|...++...+-.....+..-... +.... +..+..|.++||+.+|...-...
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~-~~L~~~G~~~i~~i~~~~~~~~~ 135 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQLA-ASLLSSAPRSIALIGARPELSVS 135 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHHHH-HHHHTTCCSEEEEEEECTTSHHH
T ss_pred HHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHHHH-HHHHHCCCcEEEEEecCCCCccH
Confidence 44556666889999999875432111111111111 12211 12222478999999986544333
No 18
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=86.29 E-value=12 Score=30.17 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=65.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+|+++....- - -|..+.+-+++...+ .| -++.+.+. .....++| +.++.|....+|.+|+.+.. ++...
T Consensus 3 ~Ig~i~~~~~-~-~~~~~~~gi~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~~ 72 (313)
T 2h3h_A 3 TIGVIGKSVH-P-YWSQVEQGVKAAGKA-LG-----VDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSD-PTAVI 72 (313)
T ss_dssp EEEEECSCSS-H-HHHHHHHHHHHHHHH-HT-----CEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSS-TTTTH
T ss_pred EEEEEeCCCc-H-HHHHHHHHHHHHHHH-cC-----CEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 5788876543 3 677777777654332 22 12222210 01122333 34556655689999987654 33334
Q ss_pred HHHHHHHHhCCCeEEeCCCCCC-CCCCcchhhhh-chhhhhh--hccccCCCcEEEEeeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRI-GPGNKMAYKLM-HGELVEK--ENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL-~~~~~~~~~~~-~~~~~~~--~~wl~~~~~~IGITAGAS 162 (187)
..++.+.+.|+|...+++...- +....+..-.. .+....+ .+.+ .|.++||+.+|..
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~-~G~~~I~~i~~~~ 133 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELL-GGKGKVVIGTGSL 133 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHH-TSCSEEEEEESCS
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHc-CCCCEEEEEECCC
Confidence 5556666789999988765321 11111111111 1222111 1112 2788999999863
No 19
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=86.18 E-value=11 Score=29.97 Aligned_cols=134 Identities=8% Similarity=-0.112 Sum_probs=72.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
+||++.-.. .-.-|..+.+-+++...+ .| -++.+.++-=+...++| +.+..|....+|.+|+.+. ++....
T Consensus 5 ~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~ 76 (297)
T 3rot_A 5 KYYLITHGS-QDPYWTSLFQGAKKAAEE-LK-----VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP-SDTAFS 76 (297)
T ss_dssp EEEEECSCC-CSHHHHHHHHHHHHHHHH-HT-----CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC-CSSTTH
T ss_pred EEEEEecCC-CCchHHHHHHHHHHHHHH-hC-----cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHHH
Confidence 688887665 445677777777664332 22 22333332100122333 4455565578999987654 444446
Q ss_pred HHHHHHHHhCCCeEEeCCCCCC----CCCCcchhhhhc-hhhhhhhccc-cCC--CcEEEEeeCCCCcHHHHH
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRI----GPGNKMAYKLMH-GELVEKENWL-PKG--QITIGVTAGASTPDKAIE 169 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL----~~~~~~~~~~~~-~~~~~~~~wl-~~~--~~~IGITAGASTP~~lI~ 169 (187)
.+++.+.+.|+|...+++..+- .....+..-... +.... +|| ..+ .++|++.+|...-....+
T Consensus 77 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~--~~l~~~g~~~~~i~~i~g~~~~~~~~~ 147 (297)
T 3rot_A 77 KSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLG--EKALELTPSAKRALVLNPQPGHIGLEK 147 (297)
T ss_dssp HHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHH--HHHHHHCTTCCEEEEEESCTTCHHHHH
T ss_pred HHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHH--HHHHHhcCCCceEEEEeCCCCcHHHHH
Confidence 6677777889999999876543 111111111111 22211 122 124 889999988765544433
No 20
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=85.84 E-value=1.4 Score=33.52 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=50.4
Q ss_pred cCCCEEEEEcCCCChhh--HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccC--CCcEEEEe-eCC
Q 037064 87 EKIDLILVVGGWNSSNT--SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPK--GQITIGVT-AGA 161 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT--~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~--~~~~IGIT-AGA 161 (187)
+++-++|+ ..--|.|+ ++|-.+|+..++|.+++.+-.+|- .|+-. ....++|+ .|.
T Consensus 56 gkaklVii-A~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG------------------~a~G~~~~v~~vaI~d~~~ 116 (135)
T 2aif_A 56 GIAEIVLL-AADAEPLEILLHLPLVCEDKNTPYVFVRSKVALG------------------RACGVSRPVIAAAITSKDG 116 (135)
T ss_dssp TCEEEEEE-ETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEECCTT
T ss_pred CCCeEEEE-ecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHH------------------HHhCCCCcEEEEEEEcCCc
Confidence 34544444 44455663 899999999999999999998885 45511 23458888 577
Q ss_pred CCcHHHHHHHHHHHHhc
Q 037064 162 STPDKAIEGVLKKVFEI 178 (187)
Q Consensus 162 STP~~lI~eVi~~l~~~ 178 (187)
|-=..+++++.+.++.+
T Consensus 117 s~i~~~~~~~~~~~~~~ 133 (135)
T 2aif_A 117 SSLSSQITELKDQIEQI 133 (135)
T ss_dssp CTTHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777888877766543
No 21
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=85.33 E-value=4.9 Score=32.83 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=58.6
Q ss_pred eEEEEEcCC-CChHHHHHHHHHHHHHHhhhcc-cccccccccccchhcHHHHHHHHHHHHhhh-cCCCEEEEEcCCCChh
Q 037064 26 KVGIANQTT-MIKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICHAAQERQDAVYKLVE-EKIDLILVVGGWNSSN 102 (187)
Q Consensus 26 kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~av~~La~-~~~D~miVVGG~nSSN 102 (187)
+||++.=.| -...-...+...++..+.+.-+ -....-++.+.|+-|.....++ ++++|.. ..+|+ |||...|+.
T Consensus 8 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~v~~--iiG~~~s~~ 84 (368)
T 4eyg_A 8 KVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKR-LAQELIVNDKVNV--IAGFGITPA 84 (368)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHHH
T ss_pred EEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHH-HHHHHHhcCCcEE--EECCCccHH
Confidence 678766544 2333345565555544333211 0001125678888887765554 4456663 45666 558889999
Q ss_pred hHHHHHHHHHhCCCeEEeCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~ 122 (187)
+..+..++.+.++|......
T Consensus 85 ~~~~~~~~~~~~ip~i~~~~ 104 (368)
T 4eyg_A 85 ALAAAPLATQAKVPEIVMAA 104 (368)
T ss_dssp HHHHHHHHHHHTCCEEESSC
T ss_pred HHHHHHHHHhCCceEEeccC
Confidence 99999999999999776654
No 22
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=85.02 E-value=13 Score=29.45 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|..+..-+++...+ .| -++.++++- ...++|. .+..|....+|.+|+.+... .
T Consensus 9 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~ 76 (291)
T 3egc_A 9 NVVGLIVSD-IENVFFAEVASGVESEARH-KG-----YSVLLANTA--EDIVREREAVGQFFERRVDGLILAPSEG---E 76 (291)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCCSS---C
T ss_pred cEEEEEECC-CcchHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CCHHHHHHHHHHHHHCCCCEEEEeCCCC---C
Confidence 578888765 4445577777777664333 22 223333321 1223333 44455556899999988654 3
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP 164 (187)
..+++.+.+.|+|...|+....-.....+..-... +....+ ..+..|.++||+-.|...-
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~-~L~~~G~~~i~~i~~~~~~ 137 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVE-YLIARGHTRIGAIVGSAGL 137 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHH-HHHHTTCCSEEEECSCTTS
T ss_pred hHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHH-HHHHcCCCEEEEEeCCCCC
Confidence 34566666789999999876542221111111111 222221 2222488899999887643
No 23
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=85.01 E-value=7.1 Score=31.05 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=53.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
+||++... +.-.-|..+.+-+++...+ .| -++.++++ +....-.+.++.|....+|.+|+.+. ++.....
T Consensus 4 ~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~~ 73 (306)
T 8abp_A 4 KLGFLVKQ-PEEPWFQTEWKFADKAGKD-LG-----FEVIKIAV--PDGEKTLNAIDSLAASGAKGFVICTP-DPKLGSA 73 (306)
T ss_dssp EEEEEESC-TTSHHHHHHHHHHHHHHHH-HT-----EEEEEEEC--CSHHHHHHHHHHHHHTTCCEEEEECS-CGGGHHH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHH-cC-----CEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEeCC-CchhhHH
Confidence 68888764 4445677777777664333 22 23334443 22222234456666578999998874 3345566
Q ss_pred HHHHHHHhCCCeEEeCC
Q 037064 106 LQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~ 122 (187)
+++.+.+.|+|...+++
T Consensus 74 ~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 74 IVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHTTCEEEEESS
T ss_pred HHHHHHHCCCcEEEeCC
Confidence 66777788999999984
No 24
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=84.96 E-value=5.9 Score=32.51 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=80.3
Q ss_pred CeEEEEEcCCCChHH-HHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcC-CCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGE-TEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEK-IDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~-~D~miVVGG~nSSN 102 (187)
-+||++.--|=.... -.++...++..+.+...-....-++.+.|+-|.....++ ++++|.... +| .|||...|+.
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~i~G~~i~l~~~D~~~~~~~~~~-~~~~l~~~~~v~--~iiG~~~s~~ 93 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEEKPTVLGEEVELVLLDTRSEKTEAAN-AAARAIDKEKVL--AIIGEVASAH 93 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCS--EEEECSSHHH
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHHhhhcCCeEEEEEEecCCCCHHHHHH-HHHHHhccCCeE--EEEccCCchh
Confidence 488876655544433 355555555433332100001135667888887665544 455666432 55 4568889999
Q ss_pred hHHHHHHHHHhCCCeEEeCCC-CCCCCCC--cchhhh-hchhhhhhhccc-cC-CCcEEEEeeCCCCcH--HHHHHHHHH
Q 037064 103 TSSLQVIAEDRGIPSYWIDSE-KRIGPGN--KMAYKL-MHGELVEKENWL-PK-GQITIGVTAGASTPD--KAIEGVLKK 174 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~-~eL~~~~--~~~~~~-~~~~~~~~~~wl-~~-~~~~IGITAGASTP~--~lI~eVi~~ 174 (187)
+..+.+++.+.++|.+..... ..+.... ..+-.+ -..+...-.+|+ .. +.++|+|..+.+.+. ...+.+.+.
T Consensus 94 ~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~ 173 (366)
T 3td9_A 94 SLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINK 173 (366)
T ss_dssp HHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHH
Confidence 999999999999998776543 3332110 000000 001122223344 22 778999997644332 233444444
Q ss_pred HHh
Q 037064 175 VFE 177 (187)
Q Consensus 175 l~~ 177 (187)
+.+
T Consensus 174 ~~~ 176 (366)
T 3td9_A 174 FTE 176 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 25
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=84.90 E-value=13 Score=29.49 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++| +.+..|....+|.+|+++...+.
T Consensus 21 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 89 (293)
T 2iks_A 21 RSIGLVIPD-LENTSYTRIANYLERQARQ-RG-----YQLLIACS--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-- 89 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT--
T ss_pred cEEEEEeCC-CcCcHHHHHHHHHHHHHHH-CC-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc--
Confidence 478988764 4445677777777653332 22 12222221 1122333 34555655689999998864332
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGASTP 164 (187)
..+++.+.+.|+|...++...+-.....+..-... +.... +|| ..|.++||+.+|...-
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~--~~L~~~G~~~I~~i~~~~~~ 150 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLA--EELRKFPAETVLYLGALPEL 150 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHHHH--HHHHTSCCSSEEEEEECTTS
T ss_pred HHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHHHH--HHHHHCCCCEEEEEecCccc
Confidence 23445555678999888764321111111101111 11111 222 2478899999886443
No 26
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=84.83 E-value=3.2 Score=31.10 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=55.0
Q ss_pred hcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc--CCCcEEEEeeCCC
Q 037064 86 EEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP--KGQITIGVTAGAS 162 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~IGITAGAS 162 (187)
++++-++|+-.+-.... ..+|-.+|++.|+|.+++.+-.+|- .|+- .+...+||+-...
T Consensus 45 ~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG------------------~a~Gk~~~vs~vaI~d~~~ 106 (122)
T 3o85_A 45 RGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALG------------------RACNVSVPTIVASIGKHDA 106 (122)
T ss_dssp TTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHH------------------HHTTCSSCCSEEEECCCTT
T ss_pred cCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH------------------HHhCCCCCEEEEEEEcccc
Confidence 35677776666554444 4899999999999988899988885 4441 1356789998777
Q ss_pred CcHHHHHHHHHHHHhc
Q 037064 163 TPDKAIEGVLKKVFEI 178 (187)
Q Consensus 163 TP~~lI~eVi~~l~~~ 178 (187)
-+..++++.+.++++
T Consensus 107 -~~~~~~~~~~~i~~~ 121 (122)
T 3o85_A 107 -LGNVVAEIVGKVEAL 121 (122)
T ss_dssp -THHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHhh
Confidence 788888888888764
No 27
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=83.55 E-value=8.5 Score=31.61 Aligned_cols=91 Identities=11% Similarity=0.172 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhh--cCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVE--EKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~--~~~D~miVVGG~nSS 101 (187)
.+|+++.-....-.-|..+.+.+++...+ .| -++.++++ ....++| +.+..+.. ..+|.+|+++ ...
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARD-LG-----LDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLVN--EQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEEC--CSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHH-cC-----CeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEeC--chh
Confidence 47898887765545677887777764333 22 22333322 2223343 34555654 3899999986 334
Q ss_pred hhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
....+++.+.+.|+|...+++...
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCC
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCC
Confidence 556777788889999999887544
No 28
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=83.16 E-value=9.8 Score=31.55 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhc--cc-cc-ccccccccchhcHHHHHHHHHHHHhhh-cCCCEEEEEcCCC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKF--GV-EN-VNEHFISFNTICHAAQERQDAVYKLVE-EKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~--~~-~~-~~~~~~~~nTIC~AT~~RQ~av~~La~-~~~D~miVVGG~n 99 (187)
-+||++.=.|=...-...+...++..+.+.. |. .- ..-++.+.|+-|......+. +++|.. ..+|+ |||+..
T Consensus 6 i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~-~~~li~~~~v~a--iiG~~~ 82 (387)
T 3i45_A 6 IRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTA-AQELLTRHGVHA--LAGTFL 82 (387)
T ss_dssp EEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHH-HHHHHHHHCCSE--EEECCS
T ss_pred EEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHH-HHHHHHhcCCEE--EECCcc
Confidence 3788776544443323334444443333321 10 00 12356678888877665554 445653 36775 789999
Q ss_pred ChhhHHHHHHHHHhCCCeEEeC
Q 037064 100 SSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie 121 (187)
|+.+..+..+|.+.++|.+...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~ 104 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASE 104 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS
T ss_pred hHHHHHHHHHHHHcCceEEecC
Confidence 9999999999999999976654
No 29
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=83.14 E-value=15 Score=28.79 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=64.3
Q ss_pred CeEEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTT-MIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
.+||++.-.+ +.-.-|..+...+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~- 90 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV- 90 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-----CEEEEECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-
Confidence 4799887653 4444566777777653322 22 12333321 1222333 34556655689999998864332
Q ss_pred hHHHHHHHHH-hCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC
Q 037064 103 TSSLQVIAED-RGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST 163 (187)
Q Consensus 103 T~rL~eia~~-~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST 163 (187)
..++.+.+ .|+|...++...+=.....+..-... +... -+|| ..|.++||+.+|...
T Consensus 91 --~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a--~~~l~~~G~~~I~~i~~~~~ 150 (296)
T 3brq_A 91 --DEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNA--VAELINAGHQEIAFLTGSMD 150 (296)
T ss_dssp --HHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHH--HHHHHHTTCCSEEEECCCTT
T ss_pred --HHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHHHH--HHHHHHCCCceEEEEcCCCC
Confidence 33445556 78999888764321110011100011 1111 1232 237889999988653
No 30
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=82.65 E-value=16 Score=28.92 Aligned_cols=128 Identities=12% Similarity=-0.037 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
++|+++.... .-.-|..+.+.+++...+ .| -++.+ .++ ....++| +.+..|....+|.+|+.+...+..
T Consensus 5 ~~I~~i~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQS-GMDYWKRCLKGFEDAAQA-LN-----VTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESST-TSTHHHHHHHHHHHHHHH-HT-----CEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHH-cC-----CEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 5788888764 334577777777664333 22 12222 111 1122333 345555556899999987654433
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCC-CCcchhhhhc-hhhhh--hhccccCCCcEEEEeeCCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGP-GNKMAYKLMH-GELVE--KENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~-~~~~~~~~~~-~~~~~--~~~wl~~~~~~IGITAGAST 163 (187)
...++.+.+.|+|...++...+-.. ...+..-... +.... -.+.+ .|.++||+.+|...
T Consensus 76 -~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~ 138 (305)
T 3g1w_A 76 -TDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL-DGEGEVAVITLPNQ 138 (305)
T ss_dssp -HHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHT-TTCEEEEEEECTTC
T ss_pred -HHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 4455566678899999987533211 1111111111 22211 11223 38899999998654
No 31
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=82.42 E-value=2.5 Score=37.23 Aligned_cols=96 Identities=9% Similarity=0.121 Sum_probs=75.8
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
.+.+.|.-|+-...=|..++++++ +=.-+|++|-++=.-..-+.-.|..-.-.++.|++++|++.
T Consensus 100 gl~iiDATCP~V~Kvh~~v~~~~~-~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv~~-------------- 164 (328)
T 3szu_A 100 DLTVFDATCPLVTKVHMEVARASR-RGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDVWK-------------- 164 (328)
T ss_dssp TCEEEECCCHHHHHHHHHHHHHHH-HTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHHHH--------------
T ss_pred CCEEEECCCcchHHHHHHHHHHHh-CCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHHHh--------------
Confidence 467899999999999999999984 78889999998877777655433110016899999999853
Q ss_pred hhhcccc-CCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 143 EKENWLP-KGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 143 ~~~~wl~-~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
|+ ....+|++.+=+--+-+-..+++++|++.
T Consensus 165 -----l~~~~~~kv~~vsQTT~s~~~~~~iv~~L~~r 196 (328)
T 3szu_A 165 -----LTVKNEEKLSFMTQTTLSVDDTSDVIDALRKR 196 (328)
T ss_dssp -----CCCSCTTSEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred -----CCcCCCCeEEEEEecCCcHHHHHHHHHHHHHh
Confidence 21 23468999999999999999999999864
No 32
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=82.03 E-value=6 Score=32.27 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=57.3
Q ss_pred CeEEEEEcCC-CChHHHHHHHHHHHHHHhhhc--c-cccccccccccchhcHHHHHHHHHHHHhh-hcCCCEEEEEcCCC
Q 037064 25 VKVGIANQTT-MIKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICHAAQERQDAVYKLV-EEKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~~~nTIC~AT~~RQ~av~~La-~~~~D~miVVGG~n 99 (187)
-+||++.-.| -...-+.++...++..+.+.. | -....-++.+.|+-|.....+ +++++|. ...+| .|||...
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~--~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQAR-TIARAFVDDPRVV--GVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHCTTEE--EEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHH-HHHHHHhccCCcE--EEEcCCC
Confidence 3688765444 333445556555554333321 0 000113466778877665554 4455666 33454 4568888
Q ss_pred ChhhHHHHHHHHHhCCCeEEeCC
Q 037064 100 SSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
|+.+..+.+++.+.++|...+..
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~ 104 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTA 104 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSC
T ss_pred cHHHHHHHHHHHHCCCcEEecCC
Confidence 88999999999999999877644
No 33
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=81.42 E-value=18 Score=28.63 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH----HHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD----AVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~----av~~La~~~~D~miVVGG~nS 100 (187)
..||++.-. +.-.-|..+.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 9 GIIGLFVPT-FFGSYYGTILKQTDLELRA-VH-----RHVVVATG--CGESTPREQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp CEEEEECSC-SCSHHHHHHHHHHHHHHHH-TT-----CEEEEECC--CSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCchhhhhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 468888744 3445567777777654332 22 12222221 11112333 456666568999999886543
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST 163 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST 163 (187)
...++.+.+.|+|...++...+-.....+..-... +.... +|| ..|.++||+-+|...
T Consensus 80 ---~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~--~~L~~~G~~~I~~i~~~~~ 139 (290)
T 2rgy_A 80 ---DEDLDELHRMHPKMVFLNRAFDALPDASFCPDHRRGGELAA--ATLIEHGHRKLAVISGPFT 139 (290)
T ss_dssp ---HHHHHHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHHHH--HHHHHTTCCSEEEEESCTT
T ss_pred ---HHHHHHHhhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHH--HHHHHCCCceEEEEeCCCC
Confidence 23445555788999988764321110001100011 12211 222 247889999998754
No 34
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=81.40 E-value=17 Score=28.26 Aligned_cols=126 Identities=10% Similarity=0.145 Sum_probs=66.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|.++.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 4 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 71 (275)
T 3d8u_A 4 YSIALIIPS-LFEKACAHFLPSFQQALNK-AG-----YQLLLGYS--DYSIEQEEKLLSTFLESRPAGVVLFGSEHS--- 71 (275)
T ss_dssp CEEEEEESC-SSCHHHHHHHHHHHHHHHH-TS-----CEECCEEC--TTCHHHHHHHHHHHHTSCCCCEEEESSCCC---
T ss_pred eEEEEEeCC-CccccHHHHHHHHHHHHHH-CC-----CEEEEEcC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC---
Confidence 468888754 3445567777777654332 22 12332221 22233443 355565568999999986433
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGASTP 164 (187)
..+++.+.+.|+|...++...+-+....+..-... +.... +|| ..|.++||+-+|...-
T Consensus 72 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~--~~L~~~G~~~i~~i~~~~~~ 132 (275)
T 3d8u_A 72 QRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACT--RHLIEQGFKNVGFIGARGNH 132 (275)
T ss_dssp HHHHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHHHH--HHHHTTTCCCEEEEECSCSS
T ss_pred HHHHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHHHH--HHHHHCCCCeEEEEcCCCCC
Confidence 24555566788999998764321111111100111 12221 222 2478899999987543
No 35
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=80.73 E-value=19 Score=28.46 Aligned_cols=131 Identities=10% Similarity=-0.033 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHh-hhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMI-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKL-VEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~L-a~~~~D~miVVGG~nSSN 102 (187)
..||++.-..-. -.-|.++...+++...+ .| -++.++++-- ..+.+..+.++ ....+|.+|+++...+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-----YHLVVTPHIH--AKDSMVPIRYILETGSADGVIISKIEPND- 79 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-----CEEEECCBSS--GGGTTHHHHHHHHHTCCSEEEEESCCTTC-
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-----CEEEEecCCc--chhHHHHHHHHHHcCCccEEEEecCCCCc-
Confidence 468877654321 14577787777663222 22 2233332211 12334444443 33589999998754322
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
..++.+.+.|+|...|....+-.....+..-... +.... +..+..|.++||+.+|...-.+.
T Consensus 80 --~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~-~~L~~~G~~~I~~i~~~~~~~~~ 142 (288)
T 3gv0_A 80 --PRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAV-ERLAQCGRKRIAVIVPPSRFSFH 142 (288)
T ss_dssp --HHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHH-HHHHHTTCCEEEEECCCTTSHHH
T ss_pred --HHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHH-HHHHHCCCCeEEEEcCCcccchH
Confidence 4566667889999999875432221111111111 12221 12223488999999987654443
No 36
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=80.70 E-value=20 Score=28.57 Aligned_cols=130 Identities=8% Similarity=0.036 Sum_probs=67.8
Q ss_pred CeEEEEEc----CCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH-HHHhhhcCCCEEEEEcCCC
Q 037064 25 VKVGIANQ----TTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA-VYKLVEEKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQ----TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-v~~La~~~~D~miVVGG~n 99 (187)
..||++.- ..+.-.-|.++..-+++...+ .| -++.++++- ...++|.. +..|....+|.+|+++...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ-HG-----YGTQTTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT-TT-----CEEEECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHH-CC-----CEEEEEcCC--CChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 46888862 123334567777777653322 22 223333322 22344433 3445446899999997654
Q ss_pred ChhhHHHHHHHHHhCCCeEEeCCCCCCC--CCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHH
Q 037064 100 SSNTSSLQVIAEDRGIPSYWIDSEKRIG--PGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie~~~eL~--~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
+. .+.+.+.+.|+|...|+....-. ....+..-... +....+ ..+..|.++||+-+|...-..
T Consensus 80 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~~G~~~I~~i~~~~~~~~ 145 (295)
T 3hcw_A 80 ND---PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTR-HVIEQGVDELIFITEKGNFEV 145 (295)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHH-HHHHHCCSEEEEEEESSCCHH
T ss_pred Ch---HHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHH-HHHHcCCccEEEEcCCccchh
Confidence 32 45666668899999998653321 11111111111 122111 122248899999988654433
No 37
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=80.15 E-value=24 Score=29.10 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=67.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|.++...+.+...+ .| -++.++++- ...++| +.+..|....+|.+|+.+...+.
T Consensus 71 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-- 139 (355)
T 3e3m_A 71 GFVGLLLPS-LNNLHFAQTAQSLTDVLEQ-GG-----LQLLLGYTA--YSPEREEQLVETMLRRRPEAMVLSYDGHTE-- 139 (355)
T ss_dssp CEEEEEESC-SBCHHHHHHHHHHHHHHHH-TT-----CEEEEEECT--TCHHHHHHHHHHHHHTCCSEEEEECSCCCH--
T ss_pred CEEEEEeCC-CCchHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCCCCH--
Confidence 368888654 3445677777777664332 22 122222221 123344 34455555789999999865543
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
.+++.+.+.|+|...|.+...-+....+..-... +.... ...+..|.++||+.+|...
T Consensus 140 -~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~r~I~~i~~~~~ 198 (355)
T 3e3m_A 140 -QTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAAYDMT-NALLARGFRKIVFLGEKDD 198 (355)
T ss_dssp -HHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHHHHHH-HHHHHTTCCSEEEEEESSC
T ss_pred -HHHHHHHhCCCCEEEECCccCCCCCCEEEeChHHHHHHHH-HHHHHCCCCeEEEEccCcc
Confidence 5566677889999999644322211111111111 11111 1222248899999998643
No 38
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=80.02 E-value=0.98 Score=35.20 Aligned_cols=74 Identities=16% Similarity=0.278 Sum_probs=55.0
Q ss_pred cCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc--CCCcEEEEee-CCC
Q 037064 87 EKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP--KGQITIGVTA-GAS 162 (187)
Q Consensus 87 ~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~IGITA-GAS 162 (187)
+++-++|+-++-... -..+|-.+|++.|+|.+++.+-.+|- .|.- .....+|||. |.|
T Consensus 65 gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG------------------~a~Gk~~~vs~vaI~~~~~s 126 (144)
T 2jnb_A 65 GISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALG------------------RACGVSRPVIACSVTIKEGS 126 (144)
T ss_dssp TCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHH------------------HHHTCSSCCSEEEEECCTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHH------------------HHhCCCCceEEEEEEeCCcH
Confidence 456677776666554 26678889999999999999988884 3441 1344699985 788
Q ss_pred CcHHHHHHHHHHHHhc
Q 037064 163 TPDKAIEGVLKKVFEI 178 (187)
Q Consensus 163 TP~~lI~eVi~~l~~~ 178 (187)
-=..+++++.+.++.+
T Consensus 127 ~i~~~~~~~~~~i~~l 142 (144)
T 2jnb_A 127 QLKQQIQSIQQSIERL 142 (144)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888899888888764
No 39
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=79.00 E-value=24 Score=28.86 Aligned_cols=124 Identities=12% Similarity=0.030 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|.++.+-+++...+. | -++.++++-- .++| +.+..|....+|.+|+.+.
T Consensus 65 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~------ 128 (333)
T 3jvd_A 65 ALVGVIVPD-LSNEYYSESLQTIQQDLKAA-G-----YQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV------ 128 (333)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC------
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHHC-C-----CEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch------
Confidence 368888765 44456777777776643332 2 1233332211 2333 3445555568999999886
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHHH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKAI 168 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~lI 168 (187)
++.+.+.|+|...++....-.....+..-... +.... +..+..|.++||+-+|........
T Consensus 129 ---~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~~~I~~i~~~~~~~~~~ 190 (333)
T 3jvd_A 129 ---VGSIAPEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLT-ESVLGGSGMNIAALVGEESLSTTQ 190 (333)
T ss_dssp ---TTCCC-CCSCEEEECC----CCSCEEEECHHHHHHHHH-HHHCCSSSCEEEEEESCTTSHHHH
T ss_pred ---HHHHhhCCCCEEEECccCCCCCCCEEEEChHHHHHHHH-HHHHHCCCCeEEEEeCCCCCccHH
Confidence 34455678999999875432211112111111 12222 222335899999999975444333
No 40
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=78.83 E-value=25 Score=28.65 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|.++.+.+++...+ .| -++.++++ ....++|. .++.|....+|.+|+++...+.
T Consensus 63 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 131 (339)
T 3h5o_A 63 RTVLVLIPS-LANTVFLETLTGIETVLDA-AG-----YQMLIGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-- 131 (339)
T ss_dssp CEEEEEESC-STTCTTHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--
T ss_pred CEEEEEeCC-CCCHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--
Confidence 358888754 3333456676666653322 22 12222221 12234443 3445555689999999865443
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP 164 (187)
.+.+.+.+.|+|...+.+...-... .+..-... +.... ...+..|.++||+.+|...+
T Consensus 132 -~~~~~l~~~~iPvV~~~~~~~~~~~-~V~~D~~~~~~~a~-~~L~~~G~~~I~~i~~~~~~ 190 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDLADDGRC-CVGFSQEDAGAAIT-RHLLSRGKRRIGFLGAQLDE 190 (339)
T ss_dssp -THHHHHHHTTCCEEEEESCCSSSCC-EEECCHHHHHHHHH-HHHHHTTCCSEEEEEESCCH
T ss_pred -HHHHHHhcCCCCEEEEeecCCCCCe-EEEECHHHHHHHHH-HHHHHCCCCeEEEEeCCCCc
Confidence 4566677889999888654332211 12111111 12222 12222488999999887643
No 41
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=78.63 E-value=9.9 Score=31.43 Aligned_cols=94 Identities=10% Similarity=0.110 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCChHHH--HHHHHHHHHHHhhhccc-ccccccccccchhcHHHHHHHHHHHHhhh-cCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKGET--EEIGKLVEKTMMRKFGV-ENVNEHFISFNTICHAAQERQDAVYKLVE-EKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~--~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~av~~La~-~~~D~miVVGG~nS 100 (187)
=+||++.=.|=....+ ..+...++..+.+.-|. ....-++.+.|+-|.....++. +++|.. ..+|+ |||+..|
T Consensus 7 i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~~--iiG~~~s 83 (379)
T 3n0w_A 7 VTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSI-AREWFDRDGVDA--IFDVVNS 83 (379)
T ss_dssp CEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHH-HHHHHHHSCCCE--EEECCCH
T ss_pred EEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHH-HHHHHHhCCceE--EEcCCCc
Confidence 3788776544333322 44444444433333210 0012356788988877666554 456653 35554 5899999
Q ss_pred hhhHHHHHHHHHhCCCeEEeC
Q 037064 101 SNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie 121 (187)
+.+..+.+++++.++|.+...
T Consensus 84 ~~~~a~~~~~~~~~ip~i~~~ 104 (379)
T 3n0w_A 84 GTALAINNLVKDKKKLAFITA 104 (379)
T ss_dssp HHHHHHHHHHHHHTCEEEECS
T ss_pred HHHHHHHHHHHHcCceEEEcC
Confidence 999999999999998876653
No 42
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=78.26 E-value=24 Score=28.18 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccc--ccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEH--FISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN 102 (187)
..||++ |. +.-.-|.++.+-+++.+.+. |.. ..+ +.+.|+-..... -+..++.|...++|++|++|. ..
T Consensus 3 ~~Igvi-~~-~~~p~~~~i~~gi~~~l~~~-gy~--g~~v~l~~~~~~~~~~~-~~~~~~~l~~~~vDgII~~~~---~~ 73 (295)
T 3lft_A 3 AKIGVL-QF-VSHPSLDLIYKGIQDGLAEE-GYK--DDQVKIDFMNSEGDQSK-VATMSKQLVANGNDLVVGIAT---PA 73 (295)
T ss_dssp EEEEEE-EC-SCCHHHHHHHHHHHHHHHHT-TCC--GGGEEEEEEECTTCHHH-HHHHHHHHTTSSCSEEEEESH---HH
T ss_pred eEEEEE-Ec-cCChhHHHHHHHHHHHHHHc-CCC--CCceEEEEecCCCCHHH-HHHHHHHHHhcCCCEEEECCc---HH
Confidence 468988 64 56667888888887654432 210 001 112233322222 234456676678999999873 22
Q ss_pred hHHHHHHHHHhCCCeEEeCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~ 122 (187)
+..+.+ ...++|..++..
T Consensus 74 ~~~~~~--~~~~iPvV~~~~ 91 (295)
T 3lft_A 74 AQGLAS--ATKDLPVIMAAI 91 (295)
T ss_dssp HHHHHH--HCSSSCEEEESC
T ss_pred HHHHHH--cCCCCCEEEEec
Confidence 233332 246789888864
No 43
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=77.68 E-value=17 Score=28.83 Aligned_cols=127 Identities=7% Similarity=-0.040 Sum_probs=63.3
Q ss_pred CeEEEEEcCCC---ChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTM---IKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nS 100 (187)
..||++.-..+ .-.-|.++.+.+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-----YFVLPFPF--SEDRSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-----CEEEECCC--CSSTTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCchHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 46777764412 333466676666653322 22 12222221 1111222 3455555568999999875433
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCCc
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGASTP 164 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGASTP 164 (187)
. ..++.+.+.|+|...++...+-.....+..-... +.... +|| ..|.++||+-+|....
T Consensus 77 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~--~~L~~~G~~~I~~i~~~~~~ 137 (287)
T 3bbl_A 77 D---PRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAV--EYLIGRGHRRIAILAWPEDS 137 (287)
T ss_dssp C---HHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHHHH--HHHHHHTCCCEEEEECCTTC
T ss_pred c---HHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHHHH--HHHHHCCCCeEEEEeCCccc
Confidence 2 3445556788999999864321111111111111 12211 222 1378899999887543
No 44
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=77.59 E-value=27 Score=28.31 Aligned_cols=89 Identities=9% Similarity=0.072 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcC--CCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEK--IDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~--~D~miVVGG~nSS 101 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++| +.++.|.... +|.+|+.+... +
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-~ 75 (332)
T 2rjo_A 6 TTLACSFRS-LTNPYYTAFNKGAQSFAKS-VG-----LPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDS-A 75 (332)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-HT-----CCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-H
T ss_pred cEEEEEecC-CCcHHHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-H
Confidence 478888764 4445567777777653332 22 12333321 2222333 3455665567 99999887532 2
Q ss_pred hhHHHHHHHHHhCCCeEEeCCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~ 123 (187)
....+++.+.+.|+|...++..
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC
T ss_pred HHHHHHHHHHHCCCeEEEECCC
Confidence 3335566666788999988864
No 45
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=77.59 E-value=16 Score=30.21 Aligned_cols=130 Identities=9% Similarity=0.059 Sum_probs=67.0
Q ss_pred CeEEEEEc-CCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQ-TTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQ-TT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN 102 (187)
.+|+++.- ..+.- .-+..+.+-+++. .+..| -++.+.++ .. ..+..+.++.|+...+|++|++|...+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~-~~~~g-----~~~~~~~~-~~-~~~~~~~l~~l~~~~~dgIi~~~~~~~-- 74 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRF-AQENN-----AKCKYVTA-ST-DAEYVPSLSAFADENMGLVVACGSFLV-- 74 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHH-HHHTT-----CEEEEEEC-CS-GGGHHHHHHHHHHTTCSEEEEESTTTH--
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHH-HHHhC-----CeEEEEeC-CC-HHHHHHHHHHHHHcCCCEEEECChhHH--
Confidence 47888875 23332 3456666666542 22222 12333332 12 223456788888778999999985432
Q ss_pred hHHHHHHHHHh-CCCeEEeCCCCC-CCCCCcchhhhhch-hh-hh-hhccccCCC-cEEEEeeCCCCcH
Q 037064 103 TSSLQVIAEDR-GIPSYWIDSEKR-IGPGNKMAYKLMHG-EL-VE-KENWLPKGQ-ITIGVTAGASTPD 165 (187)
Q Consensus 103 T~rL~eia~~~-g~~t~~Ie~~~e-L~~~~~~~~~~~~~-~~-~~-~~~wl~~~~-~~IGITAGASTP~ 165 (187)
..+.+++++. ++|..+|+...+ .+....+......+ .. .. -...+..|. ++||..+|-..|.
T Consensus 75 -~~~~~~a~~~p~~p~v~id~~~~~~~~~~~v~~d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~ 142 (318)
T 2fqx_A 75 -EAVIETSARFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGM 142 (318)
T ss_dssp -HHHHHHHHHCTTSCEEEESSCCCSCTTEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTT
T ss_pred -HHHHHHHHHCCCCEEEEEcCccCCCCCEEEEEechHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHH
Confidence 2366677653 678888986433 21101111111111 11 11 112222344 6999999876553
No 46
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=77.46 E-value=24 Score=27.64 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 24 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
...||++... +.-.-|..+...+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...
T Consensus 7 s~~Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--- 74 (276)
T 3jy6_A 7 SKLIAVIVAN-IDDYFSTELFKGISSILES-RG-----YIGVLFDA--NADIEREKTLLRAIGSRGFDGLILQSFSN--- 74 (276)
T ss_dssp CCEEEEEESC-TTSHHHHHHHHHHHHHHHT-TT-----CEEEEEEC--TTCHHHHHHHHHHHHTTTCSEEEEESSCC---
T ss_pred CcEEEEEeCC-CCchHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCc---
Confidence 3578888765 3555677887777764333 22 22333222 1122333 344555556899999998765
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
..+++.+.+.|+|...|+...+-.....+..-... +....+ ..+..|.++||+-+|...
T Consensus 75 -~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~-~L~~~G~~~I~~i~~~~~ 134 (276)
T 3jy6_A 75 -PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATT-AFRQQGYQHVVVLTSELE 134 (276)
T ss_dssp -HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHH-HHHTTTCCEEEEEEECST
T ss_pred -HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHH-HHHHcCCCeEEEEecCCC
Confidence 56677777889999999875432111111111111 122211 122248899999998664
No 47
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=77.11 E-value=19 Score=28.91 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=55.8
Q ss_pred eEEEEEcCCCC-hHHHHHHHHHHHHHHhhhc--cc-ccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 26 KVGIANQTTMI-KGETEEIGKLVEKTMMRKF--GV-ENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 26 kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~--~~-~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+||++.-.|-. ..-+..+...++..+.+.. |. ....-++.+.|+-|.....+ +++++|....+|++ ||...|+
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAV-AVANKIVNDGIKYV--IGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHTTCCEE--ECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhCCCCEE--EcCCCcH
Confidence 67776655433 2234455555554333311 10 00112356678877665544 44556665678875 5777788
Q ss_pred hhHHHHHHHHHhCCCeEEeCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~ 122 (187)
++..+.+++++.++|...+..
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~ 101 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGA 101 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEeeCC
Confidence 888899999999999877654
No 48
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=77.10 E-value=0.96 Score=37.96 Aligned_cols=94 Identities=10% Similarity=0.112 Sum_probs=55.9
Q ss_pred eEEEEEcCCCChHHH-HHHHHHHHHHHhhhcccc-cccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 26 KVGIANQTTMIKGET-EEIGKLVEKTMMRKFGVE-NVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 26 kv~vvsQTT~~~~~~-~~i~~~l~~~~~~~~~~~-~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT 103 (187)
|||++.=-|=....+ ..+...++..+.+..+.- -..-++.+.|+-|+....=..++++|.. +-.+..|||+..|+.+
T Consensus 7 kIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~-~d~V~aiiG~~~S~~~ 85 (371)
T 4f06_A 7 KVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKALAQELIV-KEKVQYLAGLYFTPNA 85 (371)
T ss_dssp EEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECCSSCHHHHHHHHHHHHH-TSCCSEEEECCSHHHH
T ss_pred EEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEEecccccch
Confidence 778765544333332 333333433333332210 0123567888887533333455667763 3345567899999999
Q ss_pred HHHHHHHHHhCCCeEEe
Q 037064 104 SSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~I 120 (187)
..+..++++.++|.+.-
T Consensus 86 ~a~~~~~~~~~vp~i~~ 102 (371)
T 4f06_A 86 MAVAPLLQEAKVPMVVM 102 (371)
T ss_dssp HHHGGGHHHHTCCEEES
T ss_pred HHHHHHHHhhcCCcccc
Confidence 99999999999886654
No 49
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=77.01 E-value=15 Score=29.79 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=56.2
Q ss_pred eEEEEEcCC-CChHHHHHHHHHHHHHHhhhc---ccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 26 KVGIANQTT-MIKGETEEIGKLVEKTMMRKF---GVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 26 kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+||++.-.| -...-...+...++..+.+.. |-....-++.+.|+-|.....++. +++|....+|+ |||...|+
T Consensus 4 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~-~~~l~~~~v~~--iig~~~s~ 80 (356)
T 3ipc_A 4 VIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISV-ANKFVADGVKF--VVGHANSG 80 (356)
T ss_dssp EEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHH-HHHHHHTTCCE--EEECSSHH
T ss_pred EEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHH-HHHHHHCCCcE--EEcCCCcH
Confidence 577655433 333334555555543332211 100112346677888776655444 44565456776 78889999
Q ss_pred hhHHHHHHHHHhCCCeEEeC
Q 037064 102 NTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie 121 (187)
.+..+.+++.+.++|.....
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~ 100 (356)
T 3ipc_A 81 VSIPASEVYAENGILEITPA 100 (356)
T ss_dssp HHHHHHHHHHTTTCEEEESS
T ss_pred HHHHHHHHHHhCCCeEEecC
Confidence 99999999999998876644
No 50
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=76.44 E-value=28 Score=27.89 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=55.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
.+||++.-.. .-.-|.++.+.+++...+ .| -++.+++ +....++| +.+..|....+|.+|+.+.. +...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTK-SSARWIDDGNNIVKQLQE-AG-----YKTDLQY--ADDDIPNQLSQIENMVTKGVKVLVIASID-GTTL 73 (330)
T ss_dssp CEEEEEECCS-SSTHHHHHHHHHHHHHHH-TT-----CEEEEEE--CTTCHHHHHHHHHHHHHHTCSEEEECCSS-GGGG
T ss_pred cEEEEEeCCC-cchHHHHHHHHHHHHHHH-cC-----CEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEEcCC-chhH
Confidence 4788887653 344677777777664333 22 2233333 22233344 34555555689999987654 3445
Q ss_pred HHHHHHHHHhCCCeEEeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~ 124 (187)
...++.+.+.|+|...++...
T Consensus 74 ~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHCCCCEEEECCCC
Confidence 566677778899999998754
No 51
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=76.13 E-value=9.9 Score=31.30 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=57.7
Q ss_pred eEEEEEcCCCChHH--HHHHHHHHHHHHhhhccc-ccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChh
Q 037064 26 KVGIANQTTMIKGE--TEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 26 kv~vvsQTT~~~~~--~~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSN 102 (187)
+||++.=.|=.... ...+...++..+.+.-|. ....-++.+.|+-|.....++. +++|.. +-.+..|||+..|+.
T Consensus 6 ~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~-~~~li~-~~~v~~iiG~~~s~~ 83 (375)
T 3i09_A 6 KIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASK-AREWMD-RGGLDLLVGGTNSAT 83 (375)
T ss_dssp EEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHH-HHHHHH-HSCEEEEEECSCHHH
T ss_pred EEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHH-HHHHHh-hCCCEEEECCCCcHH
Confidence 78877654433322 233444444333333110 0011356788988877666544 456663 345666789999999
Q ss_pred hHHHHHHHHHhCCCeEEeC
Q 037064 103 TSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie 121 (187)
+..+.+++.+.++|.+...
T Consensus 84 ~~a~~~~~~~~~ip~i~~~ 102 (375)
T 3i09_A 84 ALSMNQVAAEKKKVYINIG 102 (375)
T ss_dssp HHHHHHHHHHHTCEEEECS
T ss_pred HHHHHHHHHHcCceEEEeC
Confidence 9999999999998877653
No 52
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=75.45 E-value=2.5 Score=31.83 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=45.5
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC--CCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE--KRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~--~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
-.-||+..+++.--..|.+-|++.|.+++.|.++ .|+++ .....+|| .=.|.+.
T Consensus 55 ~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~ 110 (121)
T 1wn2_A 55 QKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPP---------------------GTVTVLAV---GPAPEEI 110 (121)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTTCTTSCT---------------------TCEEEEEE---EEEEHHH
T ss_pred CcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC---------------------CCEEEEEe---ccCCHHH
Confidence 3466777777777888888888999999999998 55654 33456777 3457788
Q ss_pred HHHHHHHH
Q 037064 168 IEGVLKKV 175 (187)
Q Consensus 168 I~eVi~~l 175 (187)
|++|...|
T Consensus 111 vd~itg~L 118 (121)
T 1wn2_A 111 VDKVTGNL 118 (121)
T ss_dssp HHHHHTTS
T ss_pred HHHhcCCC
Confidence 88876543
No 53
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=75.24 E-value=6.8 Score=33.48 Aligned_cols=134 Identities=11% Similarity=0.046 Sum_probs=60.6
Q ss_pred hccCCCCCCCCCC-----CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhh
Q 037064 12 KSVSKGFDPDIDL-----VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVE 86 (187)
Q Consensus 12 ~~~s~~~~~~~~~-----~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~ 86 (187)
+.||.|..|.-.+ ..||++.- +.-.-|.++.+-+++...+ .| -++.++ .. .+-.+.+..|..
T Consensus 8 ~~~~~~~~~~~~~~~~~s~~Igvv~~--~~~~f~~~l~~gi~~~a~~-~g-----~~~~i~----~~-~~~~~~i~~l~~ 74 (412)
T 4fe7_A 8 HHHSSGLVPRGSHMFTKRHRITLLFN--ANKAYDRQVVEGVGEYLQA-SQ-----SEWDIF----IE-EDFRARIDKIKD 74 (412)
T ss_dssp -------------CCCCCEEEEEECC--TTSHHHHHHHHHHHHHHHH-HT-----CCEEEE----EC-C-CC--------
T ss_pred cccccCcCcCCCcCCCCCceEEEEeC--CcchhhHHHHHHHHHHHHh-cC-----CCeEEE----ec-CCccchhhhHhc
Confidence 4567777766444 25898883 5555667887777764332 22 112222 11 111233556665
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCC----CCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRI----GPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA 161 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL----~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA 161 (187)
..+|.+|+. .+...+.+.+.+.|+|...|+...+- +....+..-... +....+ ..+..|.++||+.+|.
T Consensus 75 ~~vDGiIi~-----~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~-~L~~~G~r~I~~i~~~ 148 (412)
T 4fe7_A 75 WLGDGVIAD-----FDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFL-HLKEKGVNRFAFYGLP 148 (412)
T ss_dssp CCCSEEEEE-----TTCHHHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHH-HHHHTTCCEEEEECCC
T ss_pred CCCCEEEEe-----cCChHHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHH-HHHHcCCceEEEeccc
Confidence 689999982 23455677777889999998764321 111111111111 222221 2233588999999987
Q ss_pred CCc
Q 037064 162 STP 164 (187)
Q Consensus 162 STP 164 (187)
...
T Consensus 149 ~~~ 151 (412)
T 4fe7_A 149 ESS 151 (412)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
No 54
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=74.81 E-value=16 Score=30.18 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=56.4
Q ss_pred eEEEEE-cCCCChHHHHHHHHHHHHHHhhhc--c-cccccccccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCC
Q 037064 26 KVGIAN-QTTMIKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNS 100 (187)
Q Consensus 26 kv~vvs-QTT~~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nS 100 (187)
+||++. .|--...-...+...++..+.+.. | -....-++.+.|+-|.....++ ++++|... .+|+|| | ..|
T Consensus 9 ~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~V~~ii--g-~~s 84 (392)
T 3lkb_A 9 TLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQR-FFEEAVDRFKIPVFL--S-YAT 84 (392)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHH-HHHHHHHTTCCSCEE--E-CCH
T ss_pred EEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHH-HHHHHHhhcCcEEEE--e-CCc
Confidence 778664 554444444445544443332221 1 0001235667888887766544 45566643 677765 5 678
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+.+..+.+++.+.++|.+.....
T Consensus 85 ~~~~~~~~~~~~~~iP~i~~~~~ 107 (392)
T 3lkb_A 85 GANLQLKPLIQELRIPTIPASMH 107 (392)
T ss_dssp HHHHHHHHHHHHHTCCEEESCCC
T ss_pred HHHHHHHHHHHhCCceEEecccC
Confidence 88899999999999997765443
No 55
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=74.56 E-value=3.3 Score=34.48 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=40.2
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.|+-|....-.+ ++++|.. +-.+..|||+..|+.+..+..+|.+.+++.+
T Consensus 48 ~l~~~D~~~~~~~a~~-~~~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 101 (374)
T 3n0x_A 48 VVITKDDQSKPDLSKA-ALAEAYQ-DDGADIAIGTSSSAAALADLPVAEENKKILI 101 (374)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHH-TSCCSEEEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCCHHHHHH-HHHHHHH-hCCceEEEcCCCcHHHHHHHHHHHHcCccEE
Confidence 5778899887766554 4556663 2334456799999999999999999987754
No 56
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=74.18 E-value=30 Score=27.22 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=51.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
.+|+++.-.+ .-.-|..+.+-+++...+ .| -++.+.. .+....++| +.++.|....+|.+|+.+. .++..
T Consensus 5 ~~Ig~i~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiii~~~-~~~~~ 75 (303)
T 3d02_A 5 KTVVNISKVD-GMPWFNRMGEGVVQAGKE-FN-----LNASQVG-PSSTDAPQQVKIIEDLIARKVDAITIVPN-DANVL 75 (303)
T ss_dssp EEEEEECSCS-SCHHHHHHHHHHHHHHHH-TT-----EEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCS-CHHHH
T ss_pred eEEEEEeccC-CChHHHHHHHHHHHHHHH-cC-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEecC-ChHHH
Confidence 4788887543 335567777777653332 22 1222111 012223443 3456665568999988775 33333
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+++.+.+.|+|...++..
T Consensus 76 ~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 76 EPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 45566677788999998875
No 57
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=73.42 E-value=14 Score=30.52 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=62.0
Q ss_pred CeEEEEEcCCCC----hHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMI----KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nS 100 (187)
..||++.-.... -.-|.++..-+.+... | -.+.++.+--.....-.+.+..|....+|.+|+++...+
T Consensus 69 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~---g-----~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 140 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG---D-----TQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG 140 (366)
T ss_dssp CEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS---S-----CEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHh---h-----CCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468888766432 2335567666665322 1 112222111011101223455555568999999976322
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEee
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTA 159 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITA 159 (187)
. .+++.+.+.|+|...|+...+-.....+..-... +.... ...+..|.++||+.+
T Consensus 141 --~-~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~r~I~~i~ 196 (366)
T 3h5t_A 141 --D-PHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAA-QALIDAGHRKIGILS 196 (366)
T ss_dssp --C-HHHHHHHHHTCCEEEESSCCSCTTCCEEEECHHHHTHHHH-HHHHHTTCCSEEEEE
T ss_pred --h-HHHHHHHHCCCCEEEECCccCCCCCCEEEeChHHHHHHHH-HHHHHCCCCcEEEEe
Confidence 2 4455566788999999875432221112111111 12222 122224889999988
No 58
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=73.35 E-value=35 Score=27.59 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+.+...+.
T Consensus 61 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 129 (332)
T 2hsg_A 61 TTVGVIIPD-ISNIFYAELARGIEDIATM-YK-----YNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-- 129 (332)
T ss_dssp CEEEEEEC---CCSHHHHHHHHHHHHHHH-HT-----CEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCH--
Confidence 478988754 2334566777777653322 22 12222221 12223443 4555655689999998765432
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
..++.+.+.|+|...++...+-.....+..-... +.... ...+..|.++||+-+|..
T Consensus 130 -~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 130 -EHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAV-QSLIDSGHKNIAFVSGTL 187 (332)
T ss_dssp -HHHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHHHH-HHHHTTTCSCEEEEESCT
T ss_pred -HHHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHHHH-HHHHHCCCCEEEEEeCCc
Confidence 3444455678999988864321111111111111 12211 122224789999999864
No 59
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=72.95 E-value=34 Score=27.27 Aligned_cols=128 Identities=11% Similarity=0.108 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|.++.+-+++...+ .| -++.++++-- ..++| +.+..|....+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 84 (303)
T 3kke_A 16 GTIGLIVPD-VNNAVFADMFSGVQMAASG-HS-----TDVLLGQIDA--PPRGTQQLSRLVSEGRVDGVLLQRREDFD-- 84 (303)
T ss_dssp -CEEEEESC-TTSTTHHHHHHHHHHHHHH-TT-----CCEEEEECCS--TTHHHHHHHHHHHSCSSSEEEECCCTTCC--
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHH-CC-----CEEEEEeCCC--ChHHHHHHHHHHHhCCCcEEEEecCCCCc--
Confidence 468888764 3334567777777654332 22 1233332211 12333 34455555689999999875553
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
...++.+.+ |+|...|+...+- ....+..-... +....+ ..+..|.++||+.+|...-..
T Consensus 85 ~~~~~~l~~-~iPvV~i~~~~~~-~~~~V~~D~~~~g~~a~~-~L~~~G~~~I~~i~~~~~~~~ 145 (303)
T 3kke_A 85 DDMLAAVLE-GVPAVTINSRVPG-RVGSVILDDQKGGGIATE-HLITLGHSRIAFISGTAIHDT 145 (303)
T ss_dssp HHHHHHHHT-TSCEEEESCCCTT-CCCEEEECHHHHHHHHHH-HHHHTTCCSEEEEESCSSCHH
T ss_pred HHHHHHHhC-CCCEEEECCcCCC-CCCEEEECcHHHHHHHHH-HHHHCCCCeEEEEeCCCcCcc
Confidence 213444445 8999999865431 11111111111 222211 222248899999998755433
No 60
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=72.35 E-value=37 Score=27.64 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=65.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|.++.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+++...+.
T Consensus 69 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-- 137 (344)
T 3kjx_A 69 NLVAVIIPS-LSNMVFPEVLTGINQVLED-TE-----LQPVVGVT--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-- 137 (344)
T ss_dssp SEEEEEESC-SSSSSHHHHHHHHHHHHTS-SS-----SEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--
T ss_pred CEEEEEeCC-CCcHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--
Confidence 368888754 3334567777777663222 12 12222221 11233443 3445555689999999865443
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAS 162 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAS 162 (187)
.+++.+.+.|+|...+.+...-+....+..-... +....+ ..+..|.++||+.+|..
T Consensus 138 -~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~~G~~~I~~i~~~~ 195 (344)
T 3kjx_A 138 -AARAMLDAAGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQ-AILKAGYRRIGFMGTKM 195 (344)
T ss_dssp -HHHHHHHHCSSCEEEEEECSSCCSSEEEEECHHHHHHHHHH-HHHHHTCCSCCEEESST
T ss_pred -HHHHHHHhCCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHH-HHHHCCCCeEEEEecCc
Confidence 5667777889999888532221111111111111 122211 11224788999998864
No 61
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.17 E-value=40 Score=27.73 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|.++.+.+++...+ .| -++.++++ ....++| +.+..|....+|.+|+.+...+
T Consensus 67 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--- 134 (348)
T 3bil_A 67 NTIGVIVPS-LINHYFAAMVTEIQSTASK-AG-----LATIITNS--NEDATTMSGSLEFLTSHGVDGIICVPNEEC--- 134 (348)
T ss_dssp -CEEEEESC-SSSHHHHHHHHHHHHHHHH-TT-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSCEEECCCGGG---
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 368888754 3445567777777664332 22 12222221 1222333 3455565568999999875332
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCC-CCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRI-GPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL-~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
...++.+.+.|+|...|+...+- .....+..-... +....+ -.+..|.++||+-+|...
T Consensus 135 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~~G~~~I~~i~~~~~ 195 (348)
T 3bil_A 135 ANQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVE-LLAHNNALPIGYLSGPMD 195 (348)
T ss_dssp HHHHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHH-HHHHTTCCSEEEECCCTT
T ss_pred hHHHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHH-HHHHCCCCeEEEEeCCCC
Confidence 24455556788999999864321 111111111111 122111 122247889999988643
No 62
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=72.16 E-value=2.7 Score=35.72 Aligned_cols=53 Identities=6% Similarity=0.044 Sum_probs=41.0
Q ss_pred cccccchhc-HHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTIC-HAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC-~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.+.|+-| ...+-. .++.+|.. + .++.|||+..|+.+.....++.+.++|-.
T Consensus 44 ~~~~~D~~~~d~~~a~-~~a~~li~-~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~I 97 (389)
T 3o21_A 44 NYHVDHLDSSNSFSVT-NAFCSQFS-R-GVYAIFGFYDQMSMNTLTSFCGALHTSFV 97 (389)
T ss_dssp EEEEEECCTTCHHHHH-HHHHHHHT-T-TCSCEEECCCTTTHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCChHHHH-HHHHHHHh-c-CcEEEEeCCChhHHHHHHHHhccCCCcee
Confidence 566788889 554444 45567763 3 77789999999999999999999998854
No 63
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=71.95 E-value=33 Score=26.76 Aligned_cols=89 Identities=12% Similarity=0.210 Sum_probs=50.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.||++... +.-.-|.++...+++...+ .| -++.+.++ ....++| +.+..|...++|.+|+.+. ++....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~ 72 (271)
T 2dri_A 3 TIALVVST-LNNPFFVSLKDGAQKEADK-LG-----YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPT-DSDAVG 72 (271)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCS-STTTTH
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHH-cC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-ChHHHH
Confidence 57777654 4445677777777654332 22 12222221 1122333 3455665568999998764 333334
Q ss_pred HHHHHHHHhCCCeEEeCCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+++.+.+.|+|...|+...
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~ 92 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQA 92 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHCCCcEEEecCCC
Confidence 45566667899999998753
No 64
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=71.84 E-value=34 Score=26.79 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=51.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
.+||++.-. +.-.-|.++.+-+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+... +..
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~ 72 (290)
T 2fn9_A 3 GKMAIVIST-LNNPWFVVLAETAKQRAEQ-LG-----YEATIFDS--QNDTAKESAHFDAIIAAGYDAIIFNPTDA-DGS 72 (290)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCT-TTT
T ss_pred eEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecCCh-HHH
Confidence 367887654 3345567777777653332 22 22333332 1122333 345566556899999887543 333
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+++.+.+.|+|...++..
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 34556666788999888864
No 65
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=71.67 E-value=28 Score=27.43 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc-chhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISF-NTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
..||++.-. +.-.-|..+...+++...+ .| -++.++ ++ ....++| +.++.|....+|.+|+.+...+.
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 9 NVIAAVVSS-VRTNFAQQILDGIQEEAHK-NG-----YNLIIVYSG--SADPEEQKHALLTAIERPVMGILLLSIALTD- 78 (290)
T ss_dssp CEEEEECCC-CSSSHHHHHHHHHHHHHHT-TT-----CEEEEEC------------CHHHHHHSSCCSEEEEESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CeEEEEeCC--CCCHHHHHHHHHHHHhcCCCEEEEecccCCH-
Confidence 468888643 3444567777777653222 22 122221 11 1112222 34556655689999998864332
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC-c--HHHHHHHHHHHHh
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST-P--DKAIEGVLKKVFE 177 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST-P--~~lI~eVi~~l~~ 177 (187)
..++.+.+.|+|...++...+-. ...+..-... +.... +|| ..|.++||+.+|... + ..-.+...+.|.+
T Consensus 79 --~~~~~l~~~~iPvV~~~~~~~~~-~~~V~~D~~~~g~~a~--~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 153 (290)
T 3clk_A 79 --DNLQLLQSSDVPYCFLSMGFDDD-RPFISSDDEDIGYQAT--NLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKE 153 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--CC-SCEEECCHHHHHHHHH--HHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhCCCCEEEEcCCCCCC-CCEEEeChHHHHHHHH--HHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHH
Confidence 34445556789999887643211 1111111111 12211 222 247889999988632 2 2334444555543
No 66
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=71.63 E-value=2.8 Score=37.91 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHhC--CCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDRG--IPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~g--~~t~~Ie~~~eL~ 127 (187)
..|+++++.|-+..+|.+|||||-.|-.+ .+|.+.+++.| .+...| +.-||
T Consensus 91 ~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGi--PkTID 144 (419)
T 3hno_A 91 REYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHV--PKTVD 144 (419)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEE--ECCTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEe--ccccc
Confidence 57888888888788999999999888655 67788887766 445444 44444
No 67
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=71.48 E-value=3.6 Score=30.68 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC--CCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHH
Q 037064 89 IDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE--KRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 89 ~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~--~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
--.-||+..+++.--..|.+-|++.|.+++.|.++ .|+++ .....+|| .=.|.+
T Consensus 50 g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~Tei~~---------------------gt~Tvlai---gP~~~~ 105 (117)
T 1rlk_A 50 GQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEP---------------------GTITCIGL---GPDEEE 105 (117)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCSSSSSC---------------------CCEEEEEE---EEEEHH
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCccCcCC---------------------CCEEEEEe---CcCCHH
Confidence 34567777777777888888888899999999998 55654 23456777 345778
Q ss_pred HHHHHHHHH
Q 037064 167 AIEGVLKKV 175 (187)
Q Consensus 167 lI~eVi~~l 175 (187)
.|++|...|
T Consensus 106 ~vd~itg~l 114 (117)
T 1rlk_A 106 KLDKITGKY 114 (117)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHcCCC
Confidence 888776543
No 68
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=71.10 E-value=5.6 Score=32.14 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSSN 102 (187)
=+||++.-.|=... -...+...++..+.+..| ..-++.+.|+-|.....++ ++++|... .+|++ ||...|+.
T Consensus 8 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~g---~~i~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~i--ig~~~s~~ 81 (362)
T 3snr_A 8 ITVGISVTTTGPAAALGIPERNALEFVVKEISG---HPIKIIVLDDGGDPTAATT-NARRFVTESKADVI--MGSSVTPP 81 (362)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHGGGGSCSEETT---EEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSEE--EECSSHHH
T ss_pred eEEEEEecccCchhhcCHHHHHHHHHHHHHhCC---eEEEEEEecCCCCHHHHHH-HHHHHHhccCceEE--EcCCCcHH
Confidence 37887765443322 233444444321111111 1134667788777765544 45566644 57764 57788888
Q ss_pred hHHHHHHHHHhCCCeEEeCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~ 123 (187)
+..+.+++.+.++|.......
T Consensus 82 ~~~~~~~~~~~~ip~v~~~~~ 102 (362)
T 3snr_A 82 SVAISNVANEAQIPHIALAPL 102 (362)
T ss_dssp HHHHHHHHHHHTCCEEESSCC
T ss_pred HHHHHHHHHHcCccEEEecCC
Confidence 999999999999998776654
No 69
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=71.04 E-value=3.6 Score=34.77 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=42.1
Q ss_pred ccccccchh-cHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 62 EHFISFNTI-CHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 62 ~~~~~~nTI-C~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
-++.++|+= |....-.+ ++++|.. +-.+..|||+..|+++..+..++.+.++|.+-.
T Consensus 56 i~l~~~D~~~~~~~~a~~-~a~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 113 (419)
T 3h5l_A 56 IELVFADTQSKGVDVVIQ-SAQRLID-RDNASALIAGYNLENGTALHDVAADAGVIAMHA 113 (419)
T ss_dssp EEEEEEECTTCCHHHHHH-HHHHHHH-TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEEC
T ss_pred EEEEEccCCCCCHHHHHH-HHHHHhh-hcCCeEEEccccchhHHHhHHHHHHcCCeEEEc
Confidence 356788875 77766555 4456663 344556679999999999999999999887654
No 70
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.86 E-value=21 Score=25.20 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=33.6
Q ss_pred hhhcCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEe-CCCCCCC
Q 037064 84 LVEEKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWI-DSEKRIG 127 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~I-e~~~eL~ 127 (187)
+-++++-++|+-.+ -|.|+. +|-.+|+..++|.|.. .+-.||-
T Consensus 27 i~~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 27 AKTGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELG 71 (99)
T ss_dssp HHHTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGG
T ss_pred HHcCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHH
Confidence 33357888888888 778776 4557899999998776 9999995
No 71
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=70.80 E-value=3.1 Score=34.95 Aligned_cols=109 Identities=6% Similarity=-0.007 Sum_probs=61.6
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhh-h-chh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL-M-HGE 140 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~-~-~~~ 140 (187)
++.+.|+-|.-...-..++.+|.. + .+..|||+..|+.+..+..++.+.++|-.--..+. .+. .....+. . .++
T Consensus 35 ~~~~~d~~~~d~~~a~~~~~~li~-~-~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~-~~~-~~~~~~~~p~~~~ 110 (376)
T 3hsy_A 35 TPHIDNLEVANSFAVTNAFCSQFS-R-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT-DGT-HPFVIQMRPDLKG 110 (376)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH-T-TCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC-CSC-CTTEEECSCCCHH
T ss_pred EEEEeecCCCChHHHHHHHHHHHh-c-CcEEEECCCchhHHHHHHHHhccCcCceeecCCCC-ccc-CCceEEeCccHHH
Confidence 345667777444444555667764 3 57789999999999999999999998744322221 111 1000000 1 112
Q ss_pred hh-hhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 141 LV-EKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 141 ~~-~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
.. .-...+ +.++|+|..-..-.....+.+.+.+.+
T Consensus 111 a~~~~~~~~--gw~~vaii~d~~~g~~~~~~~~~~~~~ 146 (376)
T 3hsy_A 111 ALLSLIEYY--QWDKFAYLYDSDRGLSTLQAVLDSAAE 146 (376)
T ss_dssp HHHHHHHHT--TCCEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEEeCchhHHHHHHHHHHhhh
Confidence 21 111223 567888887333334566666666654
No 72
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=70.62 E-value=22 Score=29.04 Aligned_cols=150 Identities=12% Similarity=0.043 Sum_probs=79.8
Q ss_pred eEEEEEcCC-CChHHHHHHHHHHHHHHhhhc--c-cccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 26 KVGIANQTT-MIKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 26 kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSS 101 (187)
+||++.=.| ....-...+...++..+.+.. | -....-++.+.|+-|...... +++++|.. +-.+..|||...|+
T Consensus 7 ~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~-~~~~~l~~-~~~v~~iig~~~s~ 84 (364)
T 3lop_A 7 SVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTV-RNVRDMAR-VDNPVALLTVVGTA 84 (364)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHH-HSCEEEEECCCCHH
T ss_pred EEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHH-HHHHHHHh-hcCcEEEEecCCCH
Confidence 677665433 444444555555554333321 1 000123566788888765554 44566763 34566678999999
Q ss_pred hhHHHHH--HHHHhCCCeEEeCCCC-CCCC-CCcchhhh-hchhhhhhhcccc-CCCcEEEEeeCCCC-cHHHHHHHHHH
Q 037064 102 NTSSLQV--IAEDRGIPSYWIDSEK-RIGP-GNKMAYKL-MHGELVEKENWLP-KGQITIGVTAGAST-PDKAIEGVLKK 174 (187)
Q Consensus 102 NT~rL~e--ia~~~g~~t~~Ie~~~-eL~~-~~~~~~~~-~~~~~~~~~~wl~-~~~~~IGITAGAST-P~~lI~eVi~~ 174 (187)
++..+.+ ++.+.++|.+...... ++.. ....+-.+ ...+...--+||. .+.++|+|..+.+. .....+...+.
T Consensus 85 ~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~ 164 (364)
T 3lop_A 85 NVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERT 164 (364)
T ss_dssp HHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHH
T ss_pred HHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHH
Confidence 9999999 9999999977665433 2321 01110000 0111112223331 36788999876432 11234444455
Q ss_pred HHh
Q 037064 175 VFE 177 (187)
Q Consensus 175 l~~ 177 (187)
+.+
T Consensus 165 ~~~ 167 (364)
T 3lop_A 165 LKA 167 (364)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 73
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=70.41 E-value=6.2 Score=32.27 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCCh
Q 037064 24 LVKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSS 101 (187)
Q Consensus 24 ~~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSS 101 (187)
.=+||++.-.|=.. .-...+...++..+.+..| ..-++.+.|+-|.....++ ++++|... .+|+ |||...|+
T Consensus 27 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~G---~~i~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~--iig~~~s~ 100 (386)
T 3sg0_A 27 EIKIGITMSASGPGAALGQPQSKTVAALPKEIGG---EKVTYFALDDESDPTKAAQ-NARKLLSEEKVDV--LIGSSLTP 100 (386)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHGGGSCSEETT---EEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EECCSSHH
T ss_pred ceEEEEEeccCCchhhhcHHHHHHHHHHHHHcCC---EEEEEEEecCCCCHHHHHH-HHHHHHhhcCceE--EECCCCch
Confidence 34888876544333 2334454444332111111 1134667788887665544 45566643 4665 56888899
Q ss_pred hhHHHHHHHHHhCCCeEEeCCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+..+.+++.+.++|.......
T Consensus 101 ~~~~~~~~~~~~~ip~v~~~~~ 122 (386)
T 3sg0_A 101 VSLPLIDIAAEAKTPLMTMAAA 122 (386)
T ss_dssp HHHHHHHHHHHTTCCEEECCCC
T ss_pred hHHHHHHHHHhcCCeEEEecCC
Confidence 9999999999999998776653
No 74
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=69.42 E-value=9.7 Score=33.00 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=37.3
Q ss_pred chhcHHHHHHHHHHHHhh-hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 68 NTICHAAQERQDAVYKLV-EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La-~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+....|..-...+.++. +.+.|+++|.|+++|.-. . -.|...|+|.+|++.-
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-a--laA~~~~IPv~h~eag 126 (385)
T 4hwg_A 73 DNTAKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLS-A--IAAKRRKIPIFHMEAG 126 (385)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGG-H--HHHHHTTCCEEEESCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHH-H--HHHHHhCCCEEEEeCC
Confidence 355566655555554443 347999999999998776 3 3577889999999853
No 75
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=69.29 E-value=40 Score=26.53 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|..+.+.+++...+ .| -++.++++ ....++|. .+..|....+|.+|+.+...+ .
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~ 77 (285)
T 3c3k_A 9 GMLLVMVSN-IANPFCAAVVKGIEKTAEK-NG-----YRILLCNT--ESDLARSRSCLTLLSGKMVDGVITMDALSE--L 77 (285)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGG--H
T ss_pred CEEEEEeCC-CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--h
Confidence 478888764 3445567777777653322 22 12332221 12223333 355555568999999875322 2
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
..++.+. .|+|...++....-.....+..-... +....+ -.+..|.++||+.+|...
T Consensus 78 -~~~~~l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~-~L~~~G~~~I~~i~~~~~ 135 (285)
T 3c3k_A 78 -PELQNII-GAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVD-QLVKSGKKRIALINHDLA 135 (285)
T ss_dssp -HHHHHHH-TTSSEEEESSCCTTSSSCEEECCHHHHHHHHHH-HHHHTTCCCEEEEECCTT
T ss_pred -HHHHHHh-cCCCEEEEccccCCCCCCEEEEChHHHHHHHHH-HHHHcCCCeEEEEeCCCc
Confidence 3334445 78999998764321111111111111 122111 112247889999998754
No 76
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=69.28 E-value=3.7 Score=33.61 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=46.1
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe-CCCCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI-DSEKRI 126 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I-e~~~eL 126 (187)
++.+.||=|....-.+.+ ++|.. +-.+++|+|+..|+.+.....++.+.+++.+-- -+...|
T Consensus 50 elv~~D~~~~p~~a~~~a-~~li~-~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l 112 (353)
T 4gnr_A 50 EVVDKDNKSETAEAASVT-TNLVT-QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGL 112 (353)
T ss_dssp EEEEEECTTCHHHHHHHH-HHHHH-TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTT
T ss_pred EEEEecCCCCHHHHHHHH-HHHHh-hCCceEEeccccCcccceehhhhhccCcceEeeccccccc
Confidence 577889999888777654 56663 445667789999999999999999999886543 333444
No 77
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=69.08 E-value=20 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=32.8
Q ss_pred hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++++-++|+-.+-...-.++|-.+|+..++|.+++.+-.||-
T Consensus 32 ~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG 73 (101)
T 3on1_A 32 NGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLG 73 (101)
T ss_dssp TTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 356878777777665555667788999999999999999885
No 78
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=69.06 E-value=41 Score=26.59 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++| +.+..|....+|.+|+.+...+
T Consensus 17 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 84 (289)
T 2fep_A 17 TTVGVIIPD-ISSIFYSELARGIEDIATM-YK-----YNIILSNS--DQNMEKELHLLNTMLGKQVDGIVFMGGNIT--- 84 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCC---
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCCC---
Confidence 478888754 3445567777777654332 22 12222221 1122333 3455565568999999886433
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAS 162 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAS 162 (187)
...++.+.+.|+|...++...+-.....+..-... +.... ++| ..|.++||+.+|..
T Consensus 85 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~--~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 85 DEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAV--KLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp HHHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHHHH--HHHHHTTCSSEEEEESCT
T ss_pred HHHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHHHH--HHHHHCCCCeEEEEeCCc
Confidence 23344445788999999874321111111111111 12211 222 24788999998865
No 79
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=67.04 E-value=12 Score=28.18 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=35.5
Q ss_pred hhhcCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 84 LVEEKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
|-++++-++|+-.+-.-.|+ .+|-.+|+..++|.+++.+-.+|-
T Consensus 36 i~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 36 IEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp HHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred HHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 33467888888888766788 567789999999999999988884
No 80
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=67.03 E-value=44 Score=26.22 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=50.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.||++... +.-.-|..+.+.+++...+ .| -++.+.++ ....++| +.+..|...++|.+|+.+. .+....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVIST-LNNPFFVTLKNGAEEKAKE-LG-----YKIIVEDS--QNDSSKELSNVEDLIQQKVDVLLINPV-DSDAVV 72 (283)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCS-STTTTH
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHh-cC-----cEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-chhhhH
Confidence 57777643 4445567777777653332 22 12222221 1122333 3456666578999998764 334434
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
..++.+.+.|+|...++..
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 4556677889999988764
No 81
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=66.35 E-value=45 Score=26.03 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
.+||++.-.. .-.-|..+.+.+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+. +++..
T Consensus 6 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~-~~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGT-DHDWDLKAYQAQIAEIER-LG-----GTAIALDA--GRNDQTQVSQIQTLIAQKPDAIIEQLG-NLDVL 75 (291)
T ss_dssp CEEEEEESCC-SSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHHCCSEEEEESS-CHHHH
T ss_pred cEEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-Chhhh
Confidence 5788887643 344566777777653332 22 22333332 2222333 3455565568999998865 33455
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhh--hhhccccCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELV--EKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~--~~~~wl~~~~~~IGITAGASTP 164 (187)
..+++.+.+.|+|...++...+- ....+..-... +... --.+++ .|.++||+.+|...-
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~-~~~~V~~D~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~~ 137 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTATPH-AINNTTSNNYSIGAELALQMVADL-GGKGNVLVFNGFYSV 137 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCCCTT-CSEEEEECHHHHHHHHHHHHHHHH-TTCEEEEEECSCTTS
T ss_pred HHHHHHHHHCCCcEEEecCCCCC-cCceEecChHHHHHHHHHHHHHHc-CCCceEEEEeCCCCC
Confidence 66677777889999999875431 11111100111 1211 111222 488999999886443
No 82
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=66.10 E-value=14 Score=29.07 Aligned_cols=128 Identities=7% Similarity=-0.051 Sum_probs=67.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++....+.-.-|..+.+.+++...+ .| -++.++++- ...++| +.+..|....+|.+|+.+.. .+.
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~--~~~ 81 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAK-QN-----YNYNVVICP--YKTDCLHLEKGISKENSFDAAIIANIS--NYD 81 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHH-TT-----TCSEEEEEE--ECTTCGGGCGGGSTTTCCSEEEESSCC--HHH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHH-cC-----CeEEEEecC--CCchhHHHHHHHHhccCCCEEEEecCC--ccc
Confidence 57998887556666788888888764333 22 122222111 111222 23444555689999998753 222
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHH
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
..+.+.. +.|+|...++...+ ....+..-... +.... +..+..|.++||+..|......
T Consensus 82 ~~~~~~~-~~~iPvV~~~~~~~--~~~~V~~D~~~~~~~a~-~~L~~~G~~~i~~i~~~~~~~~ 141 (289)
T 3g85_A 82 LEYLNKA-SLTLPIILFNRLSN--KYSSVNVDNYKMGEKAS-LLFAKKRYKSAAAILTESLNDA 141 (289)
T ss_dssp HHHHHHC-CCSSCEEEESCCCS--SSEEEEECHHHHHHHHH-HHHHHTTCCBCEEEECCCSSHH
T ss_pred HHHHHhc-cCCCCEEEECCCCC--CCCEEEeCHHHHHHHHH-HHHHHcCCCEEEEEeCCccccc
Confidence 4444433 56899999987532 21111111111 12211 1122248899999998754433
No 83
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=65.99 E-value=3.5 Score=31.39 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHhhhcCCCEEEEE---cCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 82 YKLVEEKIDLILVV---GGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 82 ~~La~~~~D~miVV---GG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
.+|. ..||.|+|. |...|.=-+.=+++|++.|.|.++.+
T Consensus 77 ~~lL-~~CdevwV~~L~Gw~~S~Gm~~Ei~~A~~~g~pV~~~~ 118 (125)
T 1t1j_A 77 AFYM-DHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWS 118 (125)
T ss_dssp HHHH-HHCSEEEECCCTTGGGCHHHHHHHHHHHHTTCEEEEHH
T ss_pred HHHH-HhCCeeEEEecCCCCCChhHHHHHHHHHHCCCcEEEEc
Confidence 4566 379999888 88899999999999999999987654
No 84
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=65.94 E-value=3.5 Score=34.99 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred ccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 62 EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 62 ~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
-++.+.|+=|....-.+.+. +|....-.+..|||+..|+.+.....++...++|..-
T Consensus 58 l~l~~~D~~~~~~~a~~~a~-~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is 114 (433)
T 4f11_A 58 LDLRLYDTECDNAKGLKAFY-DAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLS 114 (433)
T ss_dssp EEEEEEECTTCHHHHHHHHH-HHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEE
T ss_pred EEEEEecCCCCHHHHHHHHH-HHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEE
Confidence 45778899888876665555 5543223456788999999999999999999987553
No 85
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=65.76 E-value=45 Score=25.86 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++|. .+..+....+|.+|+.+ .+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiIi~~----~~- 74 (277)
T 3e61_A 9 KLIGLLLPD-MSNPFFTLIARGVEDVALA-HG-----YQVLIGNS--DNDIKKAQGYLATFVSHNCTGMISTA----FN- 74 (277)
T ss_dssp -CEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECG----GG-
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEec----CC-
Confidence 468888764 4455677887777764333 22 12332222 11233443 34445556899999988 22
Q ss_pred HHHHH-HHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCc
Q 037064 104 SSLQV-IAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~e-ia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP 164 (187)
...++ .+.+.|+|...++...+-.. .+..-... +....+ ..+..|.++||+..|...-
T Consensus 75 ~~~~~~~l~~~~iPvV~~~~~~~~~~--~V~~D~~~~g~~a~~-~L~~~G~~~i~~i~~~~~~ 134 (277)
T 3e61_A 75 ENIIENTLTDHHIPFVFIDRINNEHN--GISTNHFKGGQLQAE-VVRKGKGKNVLIVHENLLI 134 (277)
T ss_dssp HHHHHHHHHHC-CCEEEGGGCC-----------HHHHHHHHHH-HHHHTTCCSEEEEESCTTS
T ss_pred hHHHHHHHHcCCCCEEEEeccCCCCC--eEEechHHHHHHHHH-HHHHCCCCeEEEEeCCCCC
Confidence 34456 66678999999987543221 12111111 222211 1122478899999987543
No 86
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=65.62 E-value=52 Score=26.52 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-+ .-.-|..+...+++...+..| -++.++++ .....+| +.+..|....+|.+|+.+.. +...
T Consensus 7 ~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g-----~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 76 (325)
T 2x7x_A 7 FRIGVAQCS--DDSWRHKMNDEILREAMFYNG-----VSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANE-AAPM 76 (325)
T ss_dssp CEEEEEESC--CSHHHHHHHHHHHHHHTTSSS-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSS-HHHH
T ss_pred eEEEEEecC--CCHHHHHHHHHHHHHHHHcCC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-HHHH
Confidence 478888755 444566677777653222112 12222221 1122333 34566665689999998642 2222
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCC-CCCCcchhhhhc-hhhhhhhcccc---CCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRI-GPGNKMAYKLMH-GELVEKENWLP---KGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL-~~~~~~~~~~~~-~~~~~~~~wl~---~~~~~IGITAGAST 163 (187)
..+++.+.+.|+|...++...+- +....+...... +... -+||- .|.++||+.+|...
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a--~~~L~~~~~G~~~I~~i~~~~~ 139 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRSV--GNYIASSLKGKGNIVELTGLSG 139 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHHHHH--HHHHHHHTTTEEEEEEEESCTT
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHHHHH--HHHHHHHcCCCceEEEEECCCC
Confidence 34556666788999988764321 111111101111 1211 12221 37899999988643
No 87
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=65.41 E-value=5.5 Score=33.76 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHh---CCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCC-cEEEEeeCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDR---GIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQ-ITIGVTAGAST 163 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~---g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~-~~IGITAGAST 163 (187)
.+|++|+.-|-. .-..++++.|+++ |++.-.+++++.-+- + -...+..+. -.||||+|+.+
T Consensus 106 ~adlViaat~d~-~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f-----~---------~Pa~~~~g~~l~IaIST~Gks 170 (274)
T 1kyq_A 106 AWYIIMTCIPDH-PESARIYHLCKERFGKQQLVNVADKPDLCDF-----Y---------FGANLEIGDRLQILISTNGLS 170 (274)
T ss_dssp CEEEEEECCSCH-HHHHHHHHHHHHHHCTTSEEEETTCGGGBSE-----E---------CCEEEEETTTEEEEEEESSSC
T ss_pred CeEEEEEcCCCh-HHHHHHHHHHHHhcCCCcEEEECCCcccCee-----E---------eeeEEEeCCCEEEEEECCCCC
Confidence 466666665533 3457899999998 766655666654330 0 002232355 59999999988
Q ss_pred cH
Q 037064 164 PD 165 (187)
Q Consensus 164 P~ 165 (187)
|-
T Consensus 171 p~ 172 (274)
T 1kyq_A 171 PR 172 (274)
T ss_dssp HH
T ss_pred cH
Confidence 84
No 88
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=65.27 E-value=13 Score=31.16 Aligned_cols=109 Identities=8% Similarity=-0.101 Sum_probs=61.5
Q ss_pred cccccchhc-HHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCC-cchhhhhchh
Q 037064 63 HFISFNTIC-HAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGN-KMAYKLMHGE 140 (187)
Q Consensus 63 ~~~~~nTIC-~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~-~~~~~~~~~~ 140 (187)
++.+.|+-| ....- ..++.+|.. + .+..|||+..|+.+..+..++.+.++|..--.++ .++... ..+-.+-.+.
T Consensus 42 ~~~~~D~~~~d~~~a-~~~~~~l~~-~-~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~-~~~~~~~~~~~~p~~~~ 117 (384)
T 3saj_A 42 LPQIDIVNISDSFEM-TYRFCSQFS-K-GVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP-VDTSNQFVLQLRPELQE 117 (384)
T ss_dssp EEEEEECCTTCHHHH-HHHHHHHHH-T-TCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCC-CSSCCTTEEECSCCCHH
T ss_pred ceeeEecccCchhhH-HHHHHHHHh-c-CeEEEECCCCHHHHHHHHHHhccCCCCeEecccc-CcCccCceEEecccHHH
Confidence 456778888 44433 345566764 3 5667899999999999999999999885433222 122110 0110111112
Q ss_pred hh-hhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 141 LV-EKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 141 ~~-~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
.. .-...+ +.++|+|..--.--....+.+.+.+.+
T Consensus 118 a~~~~~~~~--g~~~v~ii~d~~~g~~~~~~~~~~~~~ 153 (384)
T 3saj_A 118 ALISIIDHY--KWQTFVYIYDADRGLSVLQRVLDTAAE 153 (384)
T ss_dssp HHHHHHHHT--TCCEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCcEEEEEEeCchhHHHHHHHHHHhhh
Confidence 21 111223 567888877333344566666666654
No 89
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=65.13 E-value=5.7 Score=29.67 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=44.7
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC--CCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK--RIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~--eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
-.-||+..+++.--..|.+-|++.|.+++.|.++. |+++ .....+|| .=.|.+.
T Consensus 54 ~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gs~Tvlai---gP~~~~~ 109 (120)
T 1xty_A 54 QPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEP---------------------GTITCLGI---GPAPENL 109 (120)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCSSSSSCT---------------------TCEEEEEE---EEEEHHH
T ss_pred CcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC---------------------CCeEEEEe---ccCCHHH
Confidence 34677777777778888888888999999998885 4544 23456777 3457788
Q ss_pred HHHHHHHH
Q 037064 168 IEGVLKKV 175 (187)
Q Consensus 168 I~eVi~~l 175 (187)
|++|...|
T Consensus 110 vd~itg~L 117 (120)
T 1xty_A 110 VDSITGDL 117 (120)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 88776543
No 90
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=64.95 E-value=41 Score=26.54 Aligned_cols=90 Identities=16% Similarity=0.025 Sum_probs=49.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.||++... +.-.-|.++.+.+.+...+ .| -++.+.+.-+....++|. .+..+...++|.+|+.+.. +....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKT-LSNPFWVDMKKGIEDEAKT-LG-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-SVNLV 74 (288)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS-SSTTH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHH-cC-----CEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 57777644 4445577777777653322 22 122222210112234443 3455555689999998754 33333
Q ss_pred HHHHHHHHhCCCeEEeCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~ 123 (187)
.+++.+.+.|+|...+++.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~ 93 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEK 93 (288)
T ss_dssp HHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHCCCeEEEECCC
Confidence 3445556788999999864
No 91
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=64.87 E-value=25 Score=29.17 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=40.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcC-----CCChhhHHHHHHHHHhCCCeEE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGG-----WNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG-----~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++...|+-|.+.+-.+.++++|.. + .+..|||+ ..|+.+.....++...++|..-
T Consensus 40 ~~~~~d~~~d~~~a~~~~~~~Li~-~-~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is 99 (384)
T 3qek_A 40 QATSVTHRPNAIQMALSVCEDLIS-S-QVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIG 99 (384)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTGG-G-TEEEEEECC--------CCHHHHHHHHTTTCCEEE
T ss_pred EEEEecccCCHHHHHHHHHHHHHH-c-CceEEEEecCCCCccchhHHHHHHHHhcCCCCEEe
Confidence 345678889988888888888884 4 78899995 4566678888999999888543
No 92
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=64.34 E-value=52 Score=26.11 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=50.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
-+||++.... .-.-+..+...+++...+ .| -++.++++ ....++| +.+..|....+|.+|+.+...+ ..
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-~~ 72 (306)
T 2vk2_A 3 LTVGFSQVGS-ESGWRAAETNVAKSEAEK-RG-----ITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVAT-GW 72 (306)
T ss_dssp CEEEEEECCC-CSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSSS-SC
T ss_pred eEEEEEeCCC-CCHHHHHHHHHHHHHHHH-cC-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChh-hH
Confidence 4788887763 334455666666543222 22 12333322 1223343 3455555568999999875433 22
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
..+++.+.+.|+|...++..
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 73 EPVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCCEEEecCC
Confidence 34555566788999988864
No 93
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=63.46 E-value=23 Score=28.85 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=58.5
Q ss_pred CeEEEEEcCC-CChHHHHHHHHHHHHHHhhhccc-ccccccccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTT-MIKGETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSS 101 (187)
-+||++.=.| ....-..++...++..+.+.-+. ....-++.+.|+-|...... +++++|... .+|+ |||...|+
T Consensus 17 i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~ 93 (375)
T 4evq_A 17 LKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKAT-ELTTKLIQSEKADV--LIGTVHSG 93 (375)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHH-HHHHCCCCCSCCSE--EEECSSHH
T ss_pred eEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHH-HHHHHHHhcCCceE--EEcCCccH
Confidence 4788776444 33344556666665544443210 00113466778877665443 445667632 4554 67888899
Q ss_pred hhHHHHHHHHHhCCCeEEeCC
Q 037064 102 NTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~Ie~ 122 (187)
.+..+.+++.+.++|......
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~~ 114 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPNA 114 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESSC
T ss_pred HHHHHHHHHHHcCceEEecCC
Confidence 999999999999999876653
No 94
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=63.26 E-value=61 Score=26.52 Aligned_cols=127 Identities=16% Similarity=0.251 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|.++...+.+...+ .| -++.++++- ....++| +.+..|....+|.+|+++...+ +
T Consensus 62 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~-~- 131 (349)
T 1jye_A 62 LLIGVATSS-LALHAPSQIVAAILSRADQ-LG-----ASVVVSMVE-RSGVEACKTAVHNLLAQRVSGLIINYPLDD-Q- 131 (349)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CEEEEEECC-SSSHHHHHHHHHHHHTTTCSCEEEESCCCH-H-
T ss_pred CEEEEEeCC-CCcccHHHHHHHHHHHHHH-cC-----CEEEEEeCC-CCcHHHHHHHHHHHHHCCCCEEEEecCCCC-h-
Confidence 368887643 3344567777777653322 22 122221110 0112333 3456665568999999875432 2
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGASTP 164 (187)
..+...+...|+|...++...+- ....+..-... +.... ++| ..|.++||+-+|....
T Consensus 132 ~~~~~~~~~~~iPvV~i~~~~~~-~~~~V~~d~~~~~~~a~--~~L~~~G~~~I~~i~g~~~~ 191 (349)
T 1jye_A 132 DAIAVEAACTNVPALFLDVSDQT-PINSIIFSHEDGTRLGV--EHLVALGHQQIALLAGPLSS 191 (349)
T ss_dssp HHHHHHHHTTTSCEEESSSCTTS-SSCEEEECHHHHHHHHH--HHHHHHTCCSEEEEECCTTS
T ss_pred hHHHHHHhhCCCCEEEEcccCCC-CCCEEEEchHHHHHHHH--HHHHHCCCCEEEEEeCCCCC
Confidence 23444455678999998764221 11111111111 11111 222 2378899999986543
No 95
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=62.96 E-value=7 Score=36.57 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..|++++..|-+..+|.+|||||-.|- ...+|.+.+++.|...-.|-=+.-||
T Consensus 153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTID 206 (555)
T 2f48_A 153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTID 206 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 468888988877789999999999884 46678888877764333333344444
No 96
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=62.78 E-value=7.1 Score=32.91 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=41.9
Q ss_pred ccccccch-----hcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 62 EHFISFNT-----ICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 62 ~~~~~~nT-----IC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
-++.++|+ -|....--+.+.+.|....+ ..|||+..|+.+..+..++...++|-+-
T Consensus 46 l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v--~aviG~~~S~~~~av~~~~~~~~ip~is 106 (435)
T 1dp4_A 46 VRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSP--AVFLGPGCVYSAAPVGRFTAHWRVPLLT 106 (435)
T ss_dssp EEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCC--SEEECCCSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEecCcCcccccchhhHHHHHHHHHHhcCc--eEEECCCChHHHHHHHHHHHhcCCcEEc
Confidence 35668888 68776555566666654344 5688999999999999999999988543
No 97
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=62.40 E-value=15 Score=25.95 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=33.0
Q ss_pred hcCCCEEEEEcCCCChhhHH-HHHHHHHhCCCeEEe-CCCCCCC
Q 037064 86 EEKIDLILVVGGWNSSNTSS-LQVIAEDRGIPSYWI-DSEKRIG 127 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~~I-e~~~eL~ 127 (187)
++++-++|+-.+ -|.|+.+ |-.+|+..++|.|.+ .+-.+|-
T Consensus 30 ~gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG 72 (101)
T 1w41_A 30 MGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELG 72 (101)
T ss_dssp HTCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHHH
T ss_pred cCCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHHH
Confidence 357888888888 7788765 667899999998885 8989885
No 98
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=62.13 E-value=40 Score=27.00 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccc-ccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVEN-VNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++ + .++-.-|.++++-+++.+.+. |..+ ..-.+.+.|+--..... ...++.|...++|++|++|. ..+
T Consensus 9 ~~IGvi-~-~~~~p~~~~~~~gi~~~l~~~-Gy~~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vDgII~~~~---~~~ 81 (302)
T 2qh8_A 9 AKVAVS-Q-IVEHPALDATRQGLLDGLKAK-GYEEGKNLEFDYKTAQGNPAIA-VQIARQFVGENPDVLVGIAT---PTA 81 (302)
T ss_dssp EEEEEE-E-SSCCHHHHHHHHHHHHHHHHT-TCCBTTTEEEEEEECTTCHHHH-HHHHHHHHHTCCSEEEEESH---HHH
T ss_pred cEEEEE-E-eccChhHHHHHHHHHHHHHHc-CCCCCCceEEEEecCCCCHHHH-HHHHHHHHhCCCCEEEECCh---HHH
Confidence 579998 4 466667888888887754443 2100 00012223332222222 23466777678999999874 223
Q ss_pred HHHHHHHHHhCCCeEEeC
Q 037064 104 SSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie 121 (187)
..+.+ ...++|..++.
T Consensus 82 ~~~~~--~~~~iPvV~~~ 97 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTA 97 (302)
T ss_dssp HHHHH--HCSSSCEEEEE
T ss_pred HHHHh--cCCCcCEEEEe
Confidence 33433 25678988775
No 99
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=61.47 E-value=62 Score=26.04 Aligned_cols=131 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
.+||++.-+. .-.-|..+.+.+++...+ .| -++.+.+ .+.....+| +.+..|....+|++||.+. .++..
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~-~~~~d~~~q~~~i~~li~~~vdgiii~~~-~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLV-GVGFFTSGGNGAQEAGKA-LG-----IDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAV-SPDGL 74 (316)
T ss_dssp CEEEEECSSS-SSHHHHHHHHHHHHHHHH-HT-----CEEEECC-CSSCCHHHHHHHHHHHHHTTCSEEEECCS-SSSTT
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHH-hC-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 5788887543 345566777777653332 22 1222221 012223344 3355565568999887653 34434
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCC-CCCcchhhh-h-chhhh-hh-hccccCCCcEEEEeeCCCCc
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIG-PGNKMAYKL-M-HGELV-EK-ENWLPKGQITIGVTAGASTP 164 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~-~~~~~~~~~-~-~~~~~-~~-~~wl~~~~~~IGITAGASTP 164 (187)
...++.+++.|+|...++..-.-. ....+...+ . .++.. +- .+.++.+.++|++-+|..+-
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~ 140 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTV 140 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSC
T ss_pred HHHHHHHHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence 556677778899998887642211 111110111 1 12221 11 11121268899999987553
No 100
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=61.42 E-value=56 Score=25.47 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=55.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++ ....++| +.+..|....+|.+|+.+.. +...
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~~~ 78 (293)
T 3l6u_A 9 NIVGFTIVN-DKHEFAQRLINAFKAEAKA-NK-----YEALVATS--QNSRISEREQILEFVHLKVDAIFITTLD-DVYI 78 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--SSCHHHHHHHHHHHHHTTCSEEEEECSC-TTTT
T ss_pred cEEEEEEec-CCcHHHHHHHHHHHHHHHH-cC-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEecCC-hHHH
Confidence 578888765 4455677777777663332 22 22333332 2223444 44555655689999998754 4444
Q ss_pred HHHHHHHHHhCCCeEEeCCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~e 125 (187)
..+++.+.+.|+|...++...+
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSCCC
T ss_pred HHHHHHHHHcCCCEEEecCCCC
Confidence 4666677788999999986544
No 101
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=60.85 E-value=57 Score=25.41 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhc-HHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-HAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
.+||++.-....-.-|..+.+.+++...+..| -.+.+..+-. ....++| +.+..|....+|.+|+.+...+ .
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g-----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~ 82 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSD-----FNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ-Y 82 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGG-----GCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG-G
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHh-----CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH-H
Confidence 47887776543445677787777764433201 1122221111 1123344 3455555568999999876433 3
Q ss_pred hHHHHHHHHHhCCCeEEeCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~ 123 (187)
...+++.+.+.|+|...++..
T Consensus 83 ~~~~~~~~~~~~iPvV~~~~~ 103 (304)
T 3gbv_A 83 TKGFTDALNELGIPYIYIDSQ 103 (304)
T ss_dssp THHHHHHHHHHTCCEEEESSC
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 455566677889999999864
No 102
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=60.80 E-value=60 Score=26.72 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCC-hHHHHHHHHHHHHHHhhhc--cc-ccccccccccchhcHHHHHHHHHHHHhhh-cCCCEEEEEcCCC
Q 037064 25 VKVGIANQTTMI-KGETEEIGKLVEKTMMRKF--GV-ENVNEHFISFNTICHAAQERQDAVYKLVE-EKIDLILVVGGWN 99 (187)
Q Consensus 25 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~--~~-~~~~~~~~~~nTIC~AT~~RQ~av~~La~-~~~D~miVVGG~n 99 (187)
-+||++.-.|-. ..-+..+...++..+.+.. |. ....-++.+.|+-|...... +++++|.. ..+|++ ||...
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~i--ig~~~ 84 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYR-LCAEDFIRNRGVRFL--VGCYM 84 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHH-HHHHHHHHTTCCCEE--EECCS
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhhCCcEEE--ECCCc
Confidence 478887654432 3334556666654443331 00 00112355667766554433 45667763 568876 56667
Q ss_pred ChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 100 SSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 100 SSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
|+.+..+.+++.+.++|.+.+...
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~ 108 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY 108 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC
T ss_pred hHHHHHHHHHHHhcCceEEECCcc
Confidence 778888999999989888777653
No 103
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=60.21 E-value=7.8 Score=26.75 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=34.1
Q ss_pred HhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 83 KLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 83 ~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+-++++-++|+-.+-...-..+|-.+|+..++|.+++.+-.+|-
T Consensus 22 ai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 22 ALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLG 66 (82)
T ss_dssp HHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 343356777777777666445677889999999999999988884
No 104
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=60.13 E-value=4.4 Score=30.05 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=42.7
Q ss_pred CCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC--CCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHH
Q 037064 89 IDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK--RIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 89 ~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~--eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
--.-||+..+++.--..|.+-|++.|.+++.|.++. |+++ .....+|| .=.|.+
T Consensus 48 g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gt~Tvlai---gP~~~~ 103 (115)
T 2zv3_A 48 GQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEP---------------------GTLTAVAI---GPEKDE 103 (115)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC----------------------------EEEEEEE---EEECHH
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeCCceecCC---------------------CCEEEEEe---CcCCHH
Confidence 344677777777778888888889999999998886 4443 23446776 345778
Q ss_pred HHHHHHHHH
Q 037064 167 AIEGVLKKV 175 (187)
Q Consensus 167 lI~eVi~~l 175 (187)
.|++|...|
T Consensus 104 ~vd~itg~l 112 (115)
T 2zv3_A 104 KIDKITGHL 112 (115)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhCCC
Confidence 888776543
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=59.96 E-value=67 Score=25.92 Aligned_cols=126 Identities=12% Similarity=0.139 Sum_probs=65.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|.++...+++...+ .| -++.++++ ....++| +.+..|....+|.+|+.+...+ .
T Consensus 64 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~ 132 (332)
T 2o20_A 64 TTVGVILPT-ITSTYFAAITRGVDDIASM-YK-----YNMILANS--DNDVEKEEKVLETFLSKQVDGIVYMGSSLD--E 132 (332)
T ss_dssp CEEEEEESC-TTCHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECSSCCC--H
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEEEC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--H
Confidence 468888754 3445577777777654322 22 12222221 1122333 3455565568999999986433 2
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
. .++.+.+.|+|...++...+-.....+..-... +.... ...+..|.++||+.+|...
T Consensus 133 ~-~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~-~~L~~~G~~~I~~i~~~~~ 191 (332)
T 2o20_A 133 K-IRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQST-KKLIDSGNKKIAYIMGSLK 191 (332)
T ss_dssp H-HHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHHHHH-HHHHHTTCSSEEEECSCTT
T ss_pred H-HHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHHHHH-HHHHHCCCCeEEEEeCCcc
Confidence 2 344445778999998864321111111111111 11111 1122247899999998753
No 106
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=59.81 E-value=61 Score=25.36 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=65.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccc-ccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEH-FISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSN 102 (187)
..||++... +.-.-|..+.+-+++...+. | -+ +.++++- ...++|. .+..|....+|.+|+.+ ..
T Consensus 11 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~----~~ 77 (277)
T 3hs3_A 11 KMIGIIIPD-LNNRFYAQIIDGIQEVIQKE-G-----YTALISFSTN--SDVKKYQNAIINFENNNVDGIITSA----FT 77 (277)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEECSS--CCHHHHHHHHHHHHHTTCSEEEEEC----CC
T ss_pred CEEEEEeCC-CCChhHHHHHHHHHHHHHHC-C-----CCEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEcc----hH
Confidence 578888765 34455777777776643332 2 12 2222211 1223333 34455556899999998 11
Q ss_pred hHHHHHHHHHhCCCeEEeCCC-CCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHH
Q 037064 103 TSSLQVIAEDRGIPSYWIDSE-KRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKA 167 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~-~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~l 167 (187)
++-+.+.|+|...++.. -+-... .+..-... +....+.- + .|.++||+.+|...-...
T Consensus 78 ----~~~~~~~~iPvV~~~~~~~~~~~~-~V~~D~~~~g~~a~~~L-~-~G~~~I~~i~~~~~~~~~ 137 (277)
T 3hs3_A 78 ----IPPNFHLNTPLVMYDSANINDDIV-RIVSNNTKGGKESIKLL-S-KKIEKVLIQHWPLSLPTI 137 (277)
T ss_dssp ----CCTTCCCSSCEEEESCCCCCSSSE-EEEECHHHHHHHHHHTS-C-TTCCEEEEEESCTTSHHH
T ss_pred ----HHHHHhCCCCEEEEcccccCCCCE-EEEEChHHHHHHHHHHH-H-hCCCEEEEEeCCCcCccH
Confidence 22345678999999876 221111 11111111 22332222 2 589999999987544333
No 107
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=59.69 E-value=34 Score=27.77 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHh-CCCeEEeCCCCCCCCCCcchhhhhch-hh-hhhhccccCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDR-GIPSYWIDSEKRIGPGNKMAYKLMHG-EL-VEKENWLPKGQ 152 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~-g~~t~~Ie~~~eL~~~~~~~~~~~~~-~~-~~~~~wl~~~~ 152 (187)
+.++.++.|+...+|.+|++|... ...+.+++++. ++|..+|+...+-+....+......+ .. ..-...+ .+.
T Consensus 51 ~~~~~l~~l~~~~vdgIi~~~~~~---~~~~~~~~~~~p~~p~v~id~~~~~~~~~~v~~d~~~g~~lag~la~~l-~~~ 126 (296)
T 2hqb_A 51 KAHRRIKELVDGGVNLIFGHGHAF---AEYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASM-SET 126 (296)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTHH---HHHHHTTTTSCTTSEEEEESCCCCSSSEEEEEECCHHHHHHHHHHHHHT-CSS
T ss_pred HHHHHHHHHHHCCCCEEEEcCHhH---HHHHHHHHHHCCCCEEEEEecCcCCCCEEEEEechHHHHHHHHHHHHhh-ccC
Confidence 344578888877899999987432 23355666443 56788887643211100111111111 11 1112344 357
Q ss_pred cEEEEeeCCCCcHHHHHHHHHHHH
Q 037064 153 ITIGVTAGASTPDKAIEGVLKKVF 176 (187)
Q Consensus 153 ~~IGITAGASTP~~lI~eVi~~l~ 176 (187)
++||..+|-..|. -++.....+.
T Consensus 127 ~~Ig~i~g~~~~~-r~~Gf~~~~~ 149 (296)
T 2hqb_A 127 HKVGVIAAFPWQP-EVEGFVDGAK 149 (296)
T ss_dssp SEEEEEESCTTCH-HHHHHHHHHH
T ss_pred CeEEEEcCcCchh-hHHHHHHHHH
Confidence 8999999987775 3444444444
No 108
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=59.67 E-value=21 Score=25.80 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=43.4
Q ss_pred hcCCCEEEEEcCCCChhhHH-HHHHHHHhCCCeEEe-CCCCCCCCCCcchhhhhchhhhhhhccccC--CCcEEEEeeCC
Q 037064 86 EEKIDLILVVGGWNSSNTSS-LQVIAEDRGIPSYWI-DSEKRIGPGNKMAYKLMHGELVEKENWLPK--GQITIGVTAGA 161 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~~I-e~~~eL~~~~~~~~~~~~~~~~~~~~wl~~--~~~~IGITAGA 161 (187)
++++-++|+-.+- |.|+.+ |-.+|+..++|.|.+ .+-.+|- .|+-. .+..++||-+.
T Consensus 35 ~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG------------------~a~G~~~~~s~vaI~d~g 95 (110)
T 3cpq_A 35 HGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELG------------------AVCGKPFPVAALLVLDEG 95 (110)
T ss_dssp TTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHH------------------HHTTCSSCCSEEEEEECT
T ss_pred cCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHH------------------HHhCCccceEEEEEecCC
Confidence 3578888888888 778765 667899999998887 8888885 45511 23468998765
Q ss_pred CCc
Q 037064 162 STP 164 (187)
Q Consensus 162 STP 164 (187)
-+-
T Consensus 96 ~a~ 98 (110)
T 3cpq_A 96 LSN 98 (110)
T ss_dssp TCC
T ss_pred HHH
Confidence 443
No 109
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=59.51 E-value=46 Score=27.48 Aligned_cols=111 Identities=11% Similarity=0.113 Sum_probs=63.5
Q ss_pred cccccchhcHHHHHHHHHHHHhh-hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC-CCCcchhhhh-ch
Q 037064 63 HFISFNTICHAAQERQDAVYKLV-EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG-PGNKMAYKLM-HG 139 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La-~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~-~~~~~~~~~~-~~ 139 (187)
++.+.|+-|......+ ++++|. ...+|+| || ..|+.+..+..++.+.++|.+.......+. .....+-.+. ..
T Consensus 51 ~l~~~D~~~~~~~a~~-~~~~li~~~~V~~i--iG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~ 126 (391)
T 3eaf_A 51 NYIKRDYAYNPTTAEE-YYREFRDRYGVIAI--IG-WGTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYST 126 (391)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTTCCSEE--EE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHH
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHhhcCcEEE--EE-cCcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHH
Confidence 5667888887765544 455666 4567765 56 678899999999999999877665544432 1111111110 11
Q ss_pred hhhhhhcccc-C-CCcEEEEeeCCCCcH--HHHHHHHHHHHh
Q 037064 140 ELVEKENWLP-K-GQITIGVTAGASTPD--KAIEGVLKKVFE 177 (187)
Q Consensus 140 ~~~~~~~wl~-~-~~~~IGITAGASTP~--~lI~eVi~~l~~ 177 (187)
+...-.+|+. . +.++|+|..+...+. ...+.+.+.+.+
T Consensus 127 ~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~ 168 (391)
T 3eaf_A 127 QACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPS 168 (391)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHH
Confidence 2222224442 1 678999998743332 234444444443
No 110
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=58.49 E-value=45 Score=28.70 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT 103 (187)
-+|+++.-....- .=+..+.+-+++ +.+.+|.. -++.+.++ .....+.+++++.|+.+.+|++|.+|.. -.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~-~~~~~G~~---~~~~~~e~-~~~~~d~~~~l~~l~~~g~d~Ii~~g~~---~~ 98 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKE-LVEALGDK---VETTFLEN-VAEGADAERSIKRIARAGNKLIFTTSFG---YM 98 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHH-HHHHHTTT---EEEEEECS-CCTTHHHHHHHHHHHHTTCSEEEECSGG---GH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHH-HHHHhCCc---eEEEEEec-CCCHHHHHHHHHHHHHCCCCEEEECCHH---HH
Confidence 4899998433321 223334444433 33333310 11221111 1223567889999998889988887643 34
Q ss_pred HHHHHHHHHh-CCCeEEeCCCCCCCCCCcchhhhhch-hh-hhhhccccCCCcEEEEeeCCCCcH
Q 037064 104 SSLQVIAEDR-GIPSYWIDSEKRIGPGNKMAYKLMHG-EL-VEKENWLPKGQITIGVTAGASTPD 165 (187)
Q Consensus 104 ~rL~eia~~~-g~~t~~Ie~~~eL~~~~~~~~~~~~~-~~-~~~~~wl~~~~~~IGITAGASTP~ 165 (187)
..+.++|++. +++-.+|+.....+....+..+...+ -+ ..-...+ ...++||..+|--.|.
T Consensus 99 ~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~~-tk~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 99 DPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAKM-SKKGIAGYIGSVPVPE 162 (356)
T ss_dssp HHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHHH-CSSCEEEEEECCCCHH
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHHh-cCCCEEEEECCCccHH
Confidence 5678888775 35566676543322111111010111 00 1112234 3468999999976664
No 111
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=58.32 E-value=64 Score=25.17 Aligned_cols=122 Identities=10% Similarity=0.061 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... .-.-|..+...+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...+..
T Consensus 9 ~~Igvi~~~--~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 77 (288)
T 2qu7_A 9 NIIAFIVPD--QNPFFTEVLTEISHECQK-HH-----LHVAVASS--EENEDKQQDLIETFVSQNVSAIILVPVKSKFQ- 77 (288)
T ss_dssp EEEEEEESS--CCHHHHHHHHHHHHHHGG-GT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCC-
T ss_pred CEEEEEECC--CCchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCccEEEEecCCCChH-
Confidence 468888876 555677787777664322 22 12333322 1222343 345556556899999987654322
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST 163 (187)
.+.++ .|+|...++...+-.....+.--... +.... +|| ..|.++||+.+|...
T Consensus 78 -~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~a~--~~L~~~G~~~I~~i~~~~~ 133 (288)
T 2qu7_A 78 -MKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYIAT--KRVLESTCKEVGLLLANPN 133 (288)
T ss_dssp -CCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHHHH--HHHHTSSCCCEEEEECCTT
T ss_pred -HHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHHHH--HHHHHcCCCcEEEEecCCC
Confidence 22222 67899888764321111111100111 12211 222 237889999988644
No 112
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=58.11 E-value=14 Score=29.20 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+..+++|.+..+|+ |||| .--.++|++.|.++++|++
T Consensus 132 ~~~i~~l~~~G~~v--vVG~------~~~~~~A~~~Gl~~vli~s 168 (196)
T 2q5c_A 132 TTLISKVKTENIKI--VVSG------KTVTDEAIKQGLYGETINS 168 (196)
T ss_dssp HHHHHHHHHTTCCE--EEEC------HHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHCCCeE--EECC------HHHHHHHHHcCCcEEEEec
Confidence 55788887666676 8898 3447789999999998887
No 113
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=58.00 E-value=13 Score=28.39 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=32.2
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+-|++|++. +.+|.++.++++.|+++|.++..|.+..
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4689988884 5678999999999999999999998753
No 114
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=57.96 E-value=10 Score=31.35 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=29.3
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCCh---hhHHHHHHHHHhCCCeEEeCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSS---NTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSS---NT~rL~eia~~~g~~t~~Ie~ 122 (187)
+.|. +.+ .++|++||||- |- -..+|...++..|.+.+.|+-
T Consensus 175 ~~a~-~~~-~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~iN~ 218 (253)
T 1ma3_A 175 FEAI-EEA-KHCDAFMVVGS--SLVVYPAAELPYIAKKAGAKMIIVNA 218 (253)
T ss_dssp HHHH-HHH-HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEEES
T ss_pred HHHH-HHH-HhCCEEEEECC--CceeccHHHHHHHHHHcCCeEEEEeC
Confidence 3444 444 36999999994 42 356788899888888887764
No 115
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=57.78 E-value=18 Score=33.40 Aligned_cols=110 Identities=6% Similarity=-0.045 Sum_probs=63.0
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCC-Ccchhhhhchhh
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPG-NKMAYKLMHGEL 141 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~-~~~~~~~~~~~~ 141 (187)
++.+.|+-|.....-..++.+|... ++..|||+..|+.+.....++.+.++|-.--... ..... ...+-.+-.+..
T Consensus 35 ~~~~~D~~~~~~~~a~~~~~~l~~~--~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~-~~~~~~~~~r~~p~~~~a 111 (823)
T 3kg2_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPDLKGA 111 (823)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC-CSSCCSSEEECSCCCHHH
T ss_pred EEEEEEcCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHHHHHHHhhcCCCceeecccC-CCCCCceEEEeCCCHHHH
Confidence 4567788884444444566677642 6778899999999999999999998874322111 11110 000000111222
Q ss_pred -hhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 142 -VEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 142 -~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
..-...+ +.++|||-.-..--...++.+.+.+.+
T Consensus 112 ~~~l~~~~--gw~~v~ii~d~~~g~~~~~~~~~~~~~ 146 (823)
T 3kg2_A 112 LLSLIEYY--QWDKFAYLYDSDRGLSTLQAVLDSAAE 146 (823)
T ss_dssp HHHHHHHT--TCSEEEEEECGGGCTHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCEEEEEEeCChhHHHHHHHHHHhhc
Confidence 1222223 567888887433345666666666654
No 116
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=57.69 E-value=12 Score=30.84 Aligned_cols=41 Identities=34% Similarity=0.458 Sum_probs=28.8
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCCh---hhHHHHHHHHHhCCCeEEeCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSS---NTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSS---NT~rL~eia~~~g~~t~~Ie~ 122 (187)
+.|.. .+. ++|++||||- |- -..+|...+++.|.+.+.|+-
T Consensus 169 ~~a~~-~~~-~adlllviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 212 (249)
T 1m2k_A 169 DRAMR-EVE-RADVIIVAGT--SAVVQPAASLPLIVKQRGGAIIEINP 212 (249)
T ss_dssp HHHHH-HHH-HCSEEEEESC--CSCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred HHHHH-HHh-cCCEEEEEcc--CCCccchHHHHHHHHHcCCeEEEEeC
Confidence 33444 443 6999999994 32 245788889888888887775
No 117
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=57.63 E-value=12 Score=30.73 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=29.3
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCCh---hhHHHHHHHHHhCCCeEEeCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSS---NTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSS---NT~rL~eia~~~g~~t~~Ie~ 122 (187)
+.|...+. ++|++||||- |- -..+|...++..|.+.+.|+-
T Consensus 172 ~~a~~~~~--~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 215 (246)
T 1yc5_A 172 REAIGLSS--RASLMIVLGS--SLVVYPAAELPLITVRSGGKLVIVNL 215 (246)
T ss_dssp HHHHHHHH--HCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEECS
T ss_pred HHHHHHHh--cCCEEEEECC--CCcchhHHHHHHHHHHcCCeEEEEeC
Confidence 34444443 6999999994 42 346788889888888888774
No 118
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=57.08 E-value=7.4 Score=32.56 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=39.1
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~ 118 (187)
++.+.|+=|.....-..++.+|... .+..|||+..|+.+ ..+..++.+.++|..
T Consensus 45 ~~~~~D~~~~~~~~~~~~~~~l~~~--~V~aiiG~~~S~~~~~a~~~i~~~~~ip~i 99 (393)
T 3om0_A 45 EVDIFELQRDSQYETTDTMCQILPK--GVVSVLGPSSSPASASTVSHICGEKEIPHI 99 (393)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHGGG--CCSCEECCSSCHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCchhHHHHHHHHHHhc--CcEEEECCCCchhHHHHHHHHHhccCCCeE
Confidence 5667888886544445566666532 35668899999776 599999999998854
No 119
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=56.85 E-value=16 Score=31.50 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
..|++++..|-+...|.+|||||-.|-.+.+. ++ +.+.+...| |.=||
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~--l~-~~~i~vigi--PkTID 127 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKK--LT-EHGFPCVGV--PGTID 127 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHH--HH-HTTCCEEEE--EEETT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHH--Hh-ccCCcEEEe--ecccc
Confidence 46788888888889999999999888766543 33 677887665 55555
No 120
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=56.07 E-value=25 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=32.5
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++. +-+|.++..+++.|+++|.++..|.+..+
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4689988885 46778999999999999999999987644
No 121
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=55.92 E-value=6.9 Score=31.29 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCChHHHH-HHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMIKGETE-EIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSN 102 (187)
..||++....- -.-|. ++..-+++...+ .| -++.++++ ....++|. .+..|....+|.+|+++...+.
T Consensus 14 ~~Igvi~~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 83 (301)
T 3miz_A 14 NTFGIITDYVS-TTPYSVDIVRGIQDWANA-NG-----KTILIANT--GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI- 83 (301)
T ss_dssp CEEEEEESSTT-TCCSCHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-
T ss_pred CEEEEEeCCCc-CcccHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEecCCccH-
Confidence 46888876532 22244 555555543222 22 12333322 12233443 3445555689999999865433
Q ss_pred hHHHHHHHHHhCCCeEEeCCCCCCC-CCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHHH
Q 037064 103 TSSLQVIAEDRGIPSYWIDSEKRIG-PGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKAI 168 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~~eL~-~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~lI 168 (187)
.++.+.+.|+|...|+...+-. ....+..-... +....+ ..+..|.++||+.+|........
T Consensus 84 ---~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~-~L~~~G~~~I~~i~~~~~~~~~~ 147 (301)
T 3miz_A 84 ---VDPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTR-YLLERGHRRIGYIRLNPILLGAE 147 (301)
T ss_dssp ---CCCCCTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHH-HHHTTTCCSEEEEECCTTSHHHH
T ss_pred ---HHHHHHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHH-HHHHcCCCeEEEEecCccchhHH
Confidence 4455667889988887543322 11111111111 222211 22224889999999876654433
No 122
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=55.03 E-value=48 Score=22.68 Aligned_cols=45 Identities=16% Similarity=-0.032 Sum_probs=28.9
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhh
Q 037064 32 QTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVE 86 (187)
Q Consensus 32 QTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~ 86 (187)
.+..+.++|+++++..+. + .-=+.++.+.|..-+.=...+.++++
T Consensus 14 ~~~~t~~~f~~~l~~~~~----k------~vlv~F~a~wC~~C~~~~p~l~~l~~ 58 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGD----K------LVVVDFSATWCGPSKMIKPFFHSLSE 58 (116)
T ss_dssp BCCCCHHHHHHHHHHHTT----S------CEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHhcCC----C------EEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 455667777776443321 1 11133678899998888888889885
No 123
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=54.68 E-value=10 Score=29.30 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=43.7
Q ss_pred EEEEcC----CCChhhHHHHHHHHHhCCCeEEeCCCC-CCCCCCcchhhhhchhhhhhhccccC--CCcEEEEeeCCC--
Q 037064 92 ILVVGG----WNSSNTSSLQVIAEDRGIPSYWIDSEK-RIGPGNKMAYKLMHGELVEKENWLPK--GQITIGVTAGAS-- 162 (187)
Q Consensus 92 miVVGG----~nSSNT~rL~eia~~~g~~t~~Ie~~~-eL~~~~~~~~~~~~~~~~~~~~wl~~--~~~~IGITAGAS-- 162 (187)
+|.+|. ..-+|+.-|.+..++.|.......-.. +.+. |+ ..-..|+ . ++..| ||+|++
T Consensus 18 Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~---i~--------~~l~~~~-~~~~~DlV-ittGG~g~ 84 (169)
T 1y5e_A 18 IVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKES---IQ--------QAVLAGY-HKEDVDVV-LTNGGTGI 84 (169)
T ss_dssp EEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHH---HH--------HHHHHHH-TCTTCSEE-EEECCCSS
T ss_pred EEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHH---HH--------HHHHHHH-hcCCCCEE-EEcCCCCC
Confidence 556665 356899999999999997654432222 2110 10 1223566 4 56666 666655
Q ss_pred CcHHHHHHHHHHH
Q 037064 163 TPDKAIEGVLKKV 175 (187)
Q Consensus 163 TP~~lI~eVi~~l 175 (187)
||++++.+++..+
T Consensus 85 g~~D~t~ea~~~~ 97 (169)
T 1y5e_A 85 TKRDVTIEAVSAL 97 (169)
T ss_dssp STTCCHHHHHHTT
T ss_pred CCCCCcHHHHHHH
Confidence 7888888888765
No 124
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=54.61 E-value=16 Score=26.92 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=33.6
Q ss_pred hcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 86 EEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++++-++|+-++-.... ..+|-.+|++.|+|-+++.+-.+|-
T Consensus 34 ~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 34 KGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred cCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 35677777777666554 7889999999999999999988884
No 125
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=54.36 E-value=18 Score=26.80 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=32.7
Q ss_pred HhhhcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 83 KLVEEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 83 ~La~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
.+-++++-++|+-++-.... ..+|-.+|++.|+|.+++.+-.+|-
T Consensus 36 aI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 36 LIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp TTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 34444666666655544433 3678999999999999999999984
No 126
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=54.26 E-value=12 Score=28.25 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC--CCCCCcchhhhhchhhhhhhccccCCCcEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR--IGPGNKMAYKLMHGELVEKENWLPKGQITIG 156 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e--L~~~~~~~~~~~~~~~~~~~~wl~~~~~~IG 156 (187)
+.+++-.. .--.-+|+...+-.--..|.+-|++.|.+++.|.++.- |++ .....+|
T Consensus 38 ~~l~~W~~-~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~DAG~Tei~p---------------------gt~Tvla 95 (123)
T 1rzw_A 38 SLRRKWLD-EGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGLTEVPP---------------------GTITAVV 95 (123)
T ss_dssp THHHHTGG-GCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTCCSCST---------------------TSCEEEE
T ss_pred HHHHHHHH-CCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEECCCCcccCC---------------------CCEEEEE
Confidence 34444432 22346677776666777788888889999999998864 333 2344566
Q ss_pred EeeCCCCcHHHHHHHHHHHHhc
Q 037064 157 VTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 157 ITAGASTP~~lI~eVi~~l~~~ 178 (187)
|- =.|.+.|++|-..|.-+
T Consensus 96 ig---P~p~~~vd~itg~LkL~ 114 (123)
T 1rzw_A 96 IG---PDEERKIDKVTGNLPLL 114 (123)
T ss_dssp EE---EECHHHHHHHHTCSCCC
T ss_pred eC---cCCHHHHHHhcCCCeec
Confidence 63 45788888887666433
No 127
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=54.06 E-value=76 Score=24.74 Aligned_cols=91 Identities=7% Similarity=-0.121 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
.+||++.... .-.-|..+.+.+++...+ .| -++.++++-=....++| +.++.|....+|.+|+.+...+ ..
T Consensus 6 ~~Igvi~~~~-~~~~~~~~~~g~~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 77 (304)
T 3o1i_D 6 EKICAIYPHL-KDSYWLSVNYGMVSEAEK-QG-----VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH-AY 77 (304)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHH-HT-----CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT-SS
T ss_pred cEEEEEeCCC-CCcHHHHHHHHHHHHHHH-cC-----CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-HH
Confidence 4788887643 445677777777664332 22 22333332211122233 3444455568999998865443 22
Q ss_pred HHHHHHHHHhCCCeEEeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~ 124 (187)
...++.+. .|+|...+++..
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~~ 97 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQL 97 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSCC
T ss_pred HHHHHHHc-CCCCEEEecCCC
Confidence 33345555 889999996544
No 128
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=53.44 E-value=77 Score=24.59 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChh
Q 037064 25 VKVGIANQTTMI-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSN 102 (187)
Q Consensus 25 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSN 102 (187)
..||++....-. -.-|..+.+.+++...+ .| -++.++++--....++| +.++.|....+|.+|+.+... ++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-----IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY-EK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-----CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT-TT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-----CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HH
Confidence 478888754320 45566777777653322 22 12222221001222344 345566656899999887543 33
Q ss_pred hHHHHHHHHHhCCCeEEeCCC
Q 037064 103 TSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 103 T~rL~eia~~~g~~t~~Ie~~ 123 (187)
....++.+.+.|+|...+...
T Consensus 79 ~~~~~~~~~~~~iPvV~~~~~ 99 (289)
T 3brs_A 79 TYDAAKEIKDAGIKLIVIDSG 99 (289)
T ss_dssp THHHHTTTGGGTCEEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEECCC
Confidence 334455556788999888764
No 129
>2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Methanocaldococcus jannaschii DSM2661} PDB: 3nek_A
Probab=52.58 E-value=9.6 Score=32.06 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=53.1
Q ss_pred hccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccc-----cccccccchhcHHHHHHHHHHHHhhh
Q 037064 12 KSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENV-----NEHFISFNTICHAAQERQDAVYKLVE 86 (187)
Q Consensus 12 ~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~~~~~~nTIC~AT~~RQ~av~~La~ 86 (187)
-.+.-.|||.....+| ++|-++...+++++..+.+++.+..-+..-+. .....-..|+|+-|-+= + |.+
T Consensus 28 l~~~~~fdp~~~~G~V-ivN~s~v~~~~~~~al~i~k~v~~~g~~vs~~v~i~~~~g~vgI~TvCSiTiDG---i--Llk 101 (238)
T 2qyx_A 28 AMAKVTYDIDEADGDV-IVNTAFIDKKYLDEAFDILKEAYKKGLGISDRFGIVEENDRIKIQTICAVTLDG---I--FLR 101 (238)
T ss_dssp HHTTCCCBTTTTBCEE-EEEEEEEEGGGHHHHHHHHHHHHHTTCSSSSEEEEEECSSEEEEEEECTHHHHH---H--HHH
T ss_pred HHHhCcCCCccCCccE-EEEEEEecHHHHHHHHHHHHHHHHcCCcccceEEEEccCCcEEEEEeeeeEEhh---h--HHh
Confidence 3466789999665555 99999999999999999999887765542100 01233467999999863 3 333
Q ss_pred cCCCEEEEEcC
Q 037064 87 EKIDLILVVGG 97 (187)
Q Consensus 87 ~~~D~miVVGG 97 (187)
..+-..-.-||
T Consensus 102 ~GIpv~p~yGG 112 (238)
T 2qyx_A 102 NSVPLIPKYGG 112 (238)
T ss_dssp TTCCCEEEEEE
T ss_pred CCCCcccccce
Confidence 34555555555
No 130
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=52.55 E-value=13 Score=30.36 Aligned_cols=68 Identities=9% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc----CCCcEEEEeeCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP----KGQITIGVTAGAST 163 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~IGITAGAST 163 (187)
.+|++|+.-|-.. --..+++.|+ .|++.-.+++++.=+ -++| .+.-.|||++|+..
T Consensus 91 ~adLVIaAT~d~~-~N~~I~~~ak-~gi~VNvvD~p~~~~------------------f~~Paiv~rg~l~iaIST~G~s 150 (223)
T 3dfz_A 91 NVFFIVVATNDQA-VNKFVKQHIK-NDQLVNMASSFSDGN------------------IQIPAQFSRGRLSLAISTDGAS 150 (223)
T ss_dssp SCSEEEECCCCTH-HHHHHHHHSC-TTCEEEC-----CCS------------------EECCEEEEETTEEEEEECTTSC
T ss_pred CCCEEEECCCCHH-HHHHHHHHHh-CCCEEEEeCCcccCe------------------EEEeeEEEeCCEEEEEECCCCC
Confidence 4777766554432 3345666776 777755555544332 2333 36789999998888
Q ss_pred cHHHHHHHHHHHH
Q 037064 164 PDKAIEGVLKKVF 176 (187)
Q Consensus 164 P~~lI~eVi~~l~ 176 (187)
| .+-..+-+.|+
T Consensus 151 P-~la~~iR~~ie 162 (223)
T 3dfz_A 151 P-LLTKRIKEDLS 162 (223)
T ss_dssp H-HHHHHHHHHHH
T ss_pred c-HHHHHHHHHHH
Confidence 8 34444444444
No 131
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=52.32 E-value=18 Score=25.77 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=33.0
Q ss_pred hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 86 EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++++-++|+-.+-...-.++|-.+|+..++|.+++.+-.||-
T Consensus 33 ~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 33 NARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLG 74 (101)
T ss_dssp TTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred cCceeEEEEeccccccchhhhcccccccCCCeeeechHHHHH
Confidence 357878777777666555677788999999999999988885
No 132
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.99 E-value=81 Score=24.44 Aligned_cols=139 Identities=22% Similarity=0.279 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-. +.-.-|..+...+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...+.
T Consensus 8 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 76 (289)
T 1dbq_A 8 KSIGLLATS-SEAAYFAEIIEAVEKNCFQ-KG-----YTLILGNA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 76 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCH--
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CeEEEEcC--CCChHHHHHHHHHHHhCCCCEEEEEeccCCH--
Confidence 478888754 3445566777777653332 22 12222221 2223343 34556665689999998865432
Q ss_pred HHHHHHHHH-hCCCeEEeCCCCCCCC-CCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC---cHHHHHHHHHHHH
Q 037064 104 SSLQVIAED-RGIPSYWIDSEKRIGP-GNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST---PDKAIEGVLKKVF 176 (187)
Q Consensus 104 ~rL~eia~~-~g~~t~~Ie~~~eL~~-~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST---P~~lI~eVi~~l~ 176 (187)
.+.+...+ .|+|...++....=.. ...+.--... +.... +|| ..|.++||+.+|... -..-.+...+.|.
T Consensus 77 -~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~~~~~~--~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~ 153 (289)
T 1dbq_A 77 -PLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAG--RYLIERGHREIGVIPGPLERNTGAGRLAGFMKAME 153 (289)
T ss_dssp -HHHHHHHHTTTSCEEEEECSSCCSSSCEEEEECHHHHHHHHH--HHHHHTTCCSEEEECCC------CHHHHHHHHHHH
T ss_pred -HHHHHHHhccCCCEEEEccCCCccCcCCEEEeCcHHHHHHHH--HHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHH
Confidence 34444444 6899888876432111 0011100011 12111 222 237889999987532 2233445555554
Q ss_pred h
Q 037064 177 E 177 (187)
Q Consensus 177 ~ 177 (187)
+
T Consensus 154 ~ 154 (289)
T 1dbq_A 154 E 154 (289)
T ss_dssp H
T ss_pred H
Confidence 4
No 133
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=51.95 E-value=27 Score=29.35 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=30.1
Q ss_pred hhccCCCCCCCCCC---CeEEEEEcCCCCh----HHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHH
Q 037064 11 KKSVSKGFDPDIDL---VKVGIANQTTMIK----GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYK 83 (187)
Q Consensus 11 ~~~~s~~~~~~~~~---~kv~vvsQTT~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~ 83 (187)
.+.||.|..|.... +++.++.=..--. ..+..+...|++ . + .++.++-|-...- -++- +++
T Consensus 8 ~~~~~~~~~~~~~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~----~-g-----~~~~~~~t~~~~~-a~~~-~~~ 75 (337)
T 2qv7_A 8 HHHHSSGLVPRGSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEK----A-G-----YETSAYATEKIGD-ATLE-AER 75 (337)
T ss_dssp -----------CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHH----T-T-----EEEEEEECCSTTH-HHHH-HHH
T ss_pred ccccccCccccccccccceEEEEECCCCCCCchHHHHHHHHHHHHH----c-C-----CeEEEEEecCcch-HHHH-HHH
Confidence 35578888887665 3566554443322 334455555543 1 1 1223333322111 1111 233
Q ss_pred hhhcCCCEEEEEcCC
Q 037064 84 LVEEKIDLILVVGGW 98 (187)
Q Consensus 84 La~~~~D~miVVGG~ 98 (187)
++...+|++||+||=
T Consensus 76 ~~~~~~d~vvv~GGD 90 (337)
T 2qv7_A 76 AMHENYDVLIAAGGD 90 (337)
T ss_dssp HTTTTCSEEEEEECH
T ss_pred HhhcCCCEEEEEcCc
Confidence 333578999999994
No 134
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=51.94 E-value=33 Score=26.56 Aligned_cols=135 Identities=8% Similarity=0.000 Sum_probs=60.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhhHH
Q 037064 27 VGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNTSS 105 (187)
Q Consensus 27 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT~r 105 (187)
||++.-. +.-.-|.++.+.+++...+ .| -++.++++ ....++| +.++.|....+|.+|+.+...+. .
T Consensus 2 Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~ 69 (276)
T 2h0a_A 2 VSVLLPF-VATEFYRRLVEGIEGVLLE-QR-----YDLALFPI--LSLARLKRYLENTTLAYLTDGLILASYDLTE---R 69 (276)
T ss_dssp EEEEECC-SCCHHHHHHHHHHHHHHGG-GT-----CEEEECCC--CSCCCCC---------CCCSEEEEESCCCC-----
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCchhhHHHHHHHHHhCCCCEEEEecCCCCH---H
Confidence 5555533 3445667777777664322 22 12222221 1111222 34555655689999998865432 3
Q ss_pred HHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCC-----Cc--H-HHHHHHHHHH
Q 037064 106 LQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAS-----TP--D-KAIEGVLKKV 175 (187)
Q Consensus 106 L~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAS-----TP--~-~lI~eVi~~l 175 (187)
.++.+.+.|+|...++...+ ....+...... +... -+|| ..|.++||+.+|.. .+ . .-.+...+.|
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~--~~~~V~~d~~~~~~~a--~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l 145 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP--RYDSVYLDNRLGGRLA--GAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEAL 145 (276)
T ss_dssp ----CCSCSSCEEEESSCCT--TSEEEEECSHHHHHHH--HHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC--CCCEEEEccHHHHHHH--HHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHH
Confidence 44555567899988876532 10011100011 1111 1222 24789999998864 22 2 3345555555
Q ss_pred Hh
Q 037064 176 FE 177 (187)
Q Consensus 176 ~~ 177 (187)
.+
T Consensus 146 ~~ 147 (276)
T 2h0a_A 146 KE 147 (276)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 135
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=51.76 E-value=17 Score=26.83 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHhhhcCCCEEEEEcCCCChhhH---HHHHHHHHhCCCeEEeC--CCCCCC
Q 037064 82 YKLVEEKIDLILVVGGWNSSNTS---SLQVIAEDRGIPSYWID--SEKRIG 127 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSNT~---rL~eia~~~g~~t~~Ie--~~~eL~ 127 (187)
.++. .+|++||+-|.+|+|+. .-.+.|++.|.|-.-|. +.++++
T Consensus 34 ~~I~--~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P 82 (111)
T 1eiw_A 34 ATPE--DADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVP 82 (111)
T ss_dssp CCSS--SCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCC
T ss_pred Cccc--cCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCC
Confidence 5563 79999999999998874 55677888888865554 444554
No 136
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=51.68 E-value=32 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=32.4
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+-|++|++. +-+|.++.++++.|+++|.++..|.+..
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689988884 4688999999999999999999998754
No 137
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=51.54 E-value=11 Score=33.10 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=41.3
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcC---------------------CCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEK---------------------IDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~---------------------~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
.+.++|+-|..+.-.+.+. +|..+. -.++.|||+..|+.+..+..++...++|-.
T Consensus 70 ~~~i~D~~~~~~~a~~~a~-~ll~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~I 145 (481)
T 3mq4_A 70 GARILDTCSRDTYALEQSL-TFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQI 145 (481)
T ss_dssp EEEEEECTTCHHHHHHHHG-GGGGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEE
T ss_pred EEEEEeCCCChHHHHHHHH-HHHhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEE
Confidence 4678898776666666555 443231 348899999999999999999999988843
No 138
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=51.46 E-value=11 Score=31.93 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=37.8
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-CCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-KIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
++.++|+=|... --+.++..++.. .-.+..|||+..|+.+..+..++...++|..
T Consensus 57 ~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~i 112 (441)
T 1jdp_A 57 QVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPML 112 (441)
T ss_dssp EEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCchh-HHHHHHHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEE
Confidence 456789988765 212333333311 1146678899999999999999999998854
No 139
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=50.28 E-value=24 Score=26.45 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++.- -+|.++..+++.|+++|.++..|.+..+
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899998853 6788999999999999999999977543
No 140
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=49.81 E-value=15 Score=31.80 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
..|+++++.|-+...|.+|||||-.|-.+-+.. + +.+.+...|
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L--~-~~~i~vvgi 123 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRL--T-EMGFPCIGL 123 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHH--H-HTTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHH--H-hhCCCEEEE
Confidence 468888888877789999999998885544332 2 346776655
No 141
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=49.74 E-value=9.3 Score=32.63 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=40.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
.+|++++--+-..+.+ .+..++.|.+ +|- ..+.+.+..=....+..+.+..|. .+|+++|-|| ||.
T Consensus 57 ~~I~~IptAs~~~~~~---~~~~~~~f~~-lG~----~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GG----nt~ 122 (291)
T 3en0_A 57 AIIGIIPSASREPLLI---GERYQTIFSD-MGV----KELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGG----DQL 122 (291)
T ss_dssp CEEEEECTTCSSHHHH---HHHHHHHHHH-HCC----SEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCS----CHH
T ss_pred CeEEEEeCCCCChHHH---HHHHHHHHHH-cCC----CeeEEEEecCccccCCHHHHHHHh--cCCEEEECCC----CHH
Confidence 5888887655543332 2233333333 231 122222221112233444555564 5999999887 888
Q ss_pred HHHHHHHHh
Q 037064 105 SLQVIAEDR 113 (187)
Q Consensus 105 rL~eia~~~ 113 (187)
+|.++-++.
T Consensus 123 ~l~~~l~~t 131 (291)
T 3en0_A 123 RLCGLLADT 131 (291)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhC
Confidence 888887554
No 142
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=49.38 E-value=29 Score=27.06 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=32.2
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+-|++|++. +-+|.++..+++.|+++|.++.-|.+..
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~ 168 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKD 168 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4689988885 4677999999999999999999998754
No 143
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=48.38 E-value=30 Score=27.02 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=32.7
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++. +-+|.++..+++.|+++|.++..|.+...
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 152 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSG 152 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4789999995 56788999999999999999999977543
No 144
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=48.32 E-value=29 Score=25.42 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHhhhcCCCEEEEEcCCCChhhH-HHHHHHHHhCCCeEEe-CCCCCCC
Q 037064 82 YKLVEEKIDLILVVGGWNSSNTS-SLQVIAEDRGIPSYWI-DSEKRIG 127 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSNT~-rL~eia~~~g~~t~~I-e~~~eL~ 127 (187)
+.|-.+++-++|+-.+-. .|++ ++-.+|...++|.+++ .+-.||-
T Consensus 36 kai~~gkakLVilA~D~~-~~~~~~i~~~c~~~~ipv~~~~~s~~eLG 82 (112)
T 3iz5_f 36 KTLRSSLGKLIILANNCP-PLRKSEIETYAMLAKISVHHFHGNNVDLG 82 (112)
T ss_dssp HHHHTTCCSEEEECSCCC-HHHHHHHHHHHHHTTCCEECCCCTTCTHH
T ss_pred HHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 334445787877777765 5555 5567899999999999 8888884
No 145
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=48.21 E-value=17 Score=31.53 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
..|+++++.|-+...|.+|||||-.|-.+-... + +.+.+...|
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L--~-~~~i~vvgi 122 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQL--T-RHGFNSIGL 122 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHH--H-HTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHH--H-HhCCCEEEE
Confidence 468888888877789999999998885544322 2 346676554
No 146
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=48.16 E-value=12 Score=29.63 Aligned_cols=68 Identities=10% Similarity=-0.078 Sum_probs=43.6
Q ss_pred CCChhhHHHHHHHHHhCCCeEEeCCCCC-CCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCC-CcHHHHHHHHHHH
Q 037064 98 WNSSNTSSLQVIAEDRGIPSYWIDSEKR-IGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGAS-TPDKAIEGVLKKV 175 (187)
Q Consensus 98 ~nSSNT~rL~eia~~~g~~t~~Ie~~~e-L~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGAS-TP~~lI~eVi~~l 175 (187)
..-+|+..|.+.+++.|....++.-..| .+. |. ..-..|+ ..+..|=+|+|.| ||+.++.+++..+
T Consensus 20 i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~---I~--------~~l~~a~-~~~DlVittGG~g~~~~D~T~ea~a~~ 87 (172)
T 3kbq_A 20 TVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDE---IG--------WAFRVAL-EVSDLVVSSGGLGPTFDDMTVEGFAKC 87 (172)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEEEECSCHHH---HH--------HHHHHHH-HHCSEEEEESCCSSSTTCCHHHHHHHH
T ss_pred EEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHH---HH--------HHHHHHH-hcCCEEEEcCCCcCCcccchHHHHHHH
Confidence 5678999999999999987655443322 110 10 1123455 3566676666665 7888998888865
Q ss_pred Hh
Q 037064 176 FE 177 (187)
Q Consensus 176 ~~ 177 (187)
..
T Consensus 88 ~~ 89 (172)
T 3kbq_A 88 IG 89 (172)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 147
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=48.09 E-value=19 Score=30.83 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=35.0
Q ss_pred hhcHHHHHHHHHHHHhh-hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCC
Q 037064 69 TICHAAQERQDAVYKLV-EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 69 TIC~AT~~RQ~av~~La-~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+....|......+.++. +.+.|+++++|+++|.-... -.|+..|+|.+|++.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~--~aa~~~~IPv~h~~a 143 (396)
T 3dzc_A 91 TLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAAS--LAAYYQQIPVGHVEA 143 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHH--HHHHTTTCCEEEETC
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHH--HHHHHhCCCEEEEEC
Confidence 45555555555555543 34799999999988643322 366778999999986
No 148
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=48.05 E-value=29 Score=30.13 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHhhhcCCCEEEEEcCCC-ChhhHHHHHHHHHhCCCeEEeCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWN-SSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~n-SSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+.+.+.+ .++|++||||-.- -.=...|..++.+.|.+.+.|+-
T Consensus 198 ~~a~~~~-~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~ 241 (318)
T 3k35_A 198 ALADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (318)
T ss_dssp HHHHHHH-HTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred HHHHHHH-hcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 3344555 3799999999742 12345788889899988888864
No 149
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=48.03 E-value=15 Score=30.64 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEE
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~ 119 (187)
++.+|.... +..|||+..|+.+..+..++.+.++|..-
T Consensus 63 ~a~~l~~~~--V~aiiG~~~S~~~~a~~~~~~~~~ip~is 100 (395)
T 3h6g_A 63 KACDQLSLG--VAAIFGPSHSSSANAVQSICNALGVPHIQ 100 (395)
T ss_dssp HHHHHHHHC--CSCEECCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhhhcC--cEEEECCCChhHHHHHHHHHhcCCCCeEe
Confidence 344555444 45678999999999999999999988654
No 150
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=47.82 E-value=16 Score=29.74 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHhhhcCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+.+.+.+ .++|++||||-- +-.=..+|...+++.|.+...|+-.
T Consensus 159 ~~a~~~~-~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~ 203 (235)
T 1s5p_A 159 DEIYMAL-SMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLE 203 (235)
T ss_dssp HHHHHHH-HHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHH-hcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECC
Confidence 3444555 369999999973 2224478999998888888877653
No 151
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=47.28 E-value=26 Score=28.68 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+=+..+.+|.+..+|+ |||| .--.++|++.|.++++|++.
T Consensus 142 e~~~~i~~l~~~G~~v--VVG~------~~~~~~A~~~Gl~~vlI~s~ 181 (225)
T 2pju_A 142 DARGQINELKANGTEA--VVGA------GLITDLAEEAGMTGIFIYSA 181 (225)
T ss_dssp HHHHHHHHHHHTTCCE--EEES------HHHHHHHHHTTSEEEESSCH
T ss_pred HHHHHHHHHHHCCCCE--EECC------HHHHHHHHHcCCcEEEECCH
Confidence 4567788887656665 8898 34477899999999999964
No 152
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.11 E-value=5.5 Score=32.05 Aligned_cols=33 Identities=33% Similarity=0.291 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
+..+....|. .+|++++=| .|+.+|.+.-++.|
T Consensus 69 ~~~~~~~~l~--~ad~I~l~G----G~~~~l~~~L~~~g 101 (206)
T 3l4e_A 69 SLGEITTKLR--KNDFIYVTG----GNTFFLLQELKRTG 101 (206)
T ss_dssp CHHHHHHHHH--HSSEEEECC----SCHHHHHHHHHHHT
T ss_pred ChHHHHHHHH--hCCEEEECC----CCHHHHHHHHHHCC
Confidence 3444455664 599988755 47788888887776
No 153
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=47.02 E-value=1.1e+02 Score=24.64 Aligned_cols=125 Identities=22% Similarity=0.283 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.-.. .-.-|..+.+-+++...+ .| -++.++++ ....++| +.+..|....+|.+|+.+...+.
T Consensus 59 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 127 (340)
T 1qpz_A 59 KSIGLLATSS-EAAYFAEIIEAVEKNCFQ-KG-----YTLILGNA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 127 (340)
T ss_dssp SEEEEEESCS-CSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCH--
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 4789887543 445567777777654332 22 12222221 1222333 34556655689999998765432
Q ss_pred HHHHHHHHH-hCCCeEEeCCCCCCCC-CCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAED-RGIPSYWIDSEKRIGP-GNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~-~g~~t~~Ie~~~eL~~-~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST 163 (187)
.+.+..++ .|+|...++....-.. ...+..-... +.... +|| ..|.++||+-+|...
T Consensus 128 -~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~a~--~~L~~~G~~~I~~i~g~~~ 188 (340)
T 1qpz_A 128 -PLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAG--RYLIERGHREIGVIPGPLE 188 (340)
T ss_dssp -HHHHHHHTTTTSCEEEEEESSCCCSSSEEEECCHHHHHHHHH--HHHHHHTCCCEEEECCCTT
T ss_pred -HHHHHHHhhCCCCEEEEecccCCCCCCCEEEECHHHHHHHHH--HHHHHCCCCEEEEEeCCCc
Confidence 23444434 6889888875322111 0011111111 12111 222 237889999988643
No 154
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=46.92 E-value=27 Score=26.24 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=31.4
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++.- .+|.++..+++.|+++|.++..|.+..+
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 36788888853 4677888889999999999999988543
No 155
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=46.81 E-value=50 Score=27.10 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHhhhcCCCEEEE-EcCCCChh---------hHHHHHHHHHhCC----CeEEeCCCCCCCCCCcchhhhhchhhhhh
Q 037064 79 DAVYKLVEEKIDLILV-VGGWNSSN---------TSSLQVIAEDRGI----PSYWIDSEKRIGPGNKMAYKLMHGELVEK 144 (187)
Q Consensus 79 ~av~~La~~~~D~miV-VGG~nSSN---------T~rL~eia~~~g~----~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~ 144 (187)
+.+.+++ +++|+.|| ||..+... ...+.++ ++.|. ..+|++...++.+. .+..+.+ ...
T Consensus 147 ~~vl~~~-~~aDiai~GIG~~~~~~~~~~~g~~s~~~~~~L-~~~gaVGdi~~~ffd~~G~~v~~-~~~~r~i----~~~ 219 (266)
T 3efb_A 147 KTISAYW-DNLDIALVGIGSPAIRDGANWHAFYGGEESDDL-NARQVAGDICSRFFDIHGAMVET-NMSEKTL----SIE 219 (266)
T ss_dssp HHHHHHH-HTCSEEEECCBCCC---------CSCHHHHHHH-HHTTCCEEETTEEECTTSCBCCC-TTGGGBC----BCC
T ss_pred HHHHHHH-hcCCEEEEecCCCCCCchhHHhcCCCHHHHHHH-HHCCcEEEEecccccCCCCCCCc-chhccee----cCC
Confidence 3455677 58999999 88865321 1223333 34443 56888877776431 1111111 112
Q ss_pred hccccCCCcEEEEeeCCCCcHHHHH
Q 037064 145 ENWLPKGQITIGVTAGASTPDKAIE 169 (187)
Q Consensus 145 ~~wl~~~~~~IGITAGASTP~~lI~ 169 (187)
.+-|.+-+..|+|.+|.+=-+.+..
T Consensus 220 l~~l~~~~~~i~va~G~~Ka~Ai~a 244 (266)
T 3efb_A 220 MNKLKQARYSIGIAMSEEKYSGIIG 244 (266)
T ss_dssp HHHHHTSSEEEEECCCSCSSCHHHH
T ss_pred HHHHhCCCCEEEEecChHHHHHHHH
Confidence 2223234678999999987665544
No 156
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=45.67 E-value=23 Score=31.52 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=40.2
Q ss_pred cccccchhcHHHHHHHHHHHHhhhc-----------------------CCCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEE-----------------------KIDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~-----------------------~~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
.+.++|+=|..+.-.+.+. +|..+ +-.++.|||+..|+.+..++.++...++|-.
T Consensus 68 ~~~i~D~~~~~~~a~~~a~-~~l~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~I 145 (555)
T 2e4u_A 68 GVHILDTCSRDTYALEQSL-EFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQI 145 (555)
T ss_dssp EEEEEECTTCHHHHHHHHH-HHHHTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEE
T ss_pred EEEEEECCCChHHHHHHHH-HHHhCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceE
Confidence 5668888776665555443 22211 3458899999999999999999999988854
No 157
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=45.18 E-value=1.1e+02 Score=23.90 Aligned_cols=90 Identities=10% Similarity=0.143 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+...+++...+ .|. -++.++++ ....++|. .+..|....+|.+|+.+...+ ..
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g~----~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 73 (309)
T 2fvy_A 3 TRIGVTIYK-YDDNFMSVVRKAIEQDAKA-APD----VQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPA-AA 73 (309)
T ss_dssp EEEEEEESC-TTSHHHHHHHHHHHHHHHT-CTT----EEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSGG-GH
T ss_pred cEEEEEecc-CCcHHHHHHHHHHHHHHHh-cCC----eEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-hh
Confidence 368888754 3345567777777653222 220 02222222 11233333 355555568999998765332 23
Q ss_pred HHHHHHHHHhCCCeEEeCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~ 123 (187)
...++.+.+.|+|...++..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSC
T ss_pred HHHHHHHHHCCCcEEEecCC
Confidence 44556666788999998874
No 158
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=45.00 E-value=48 Score=29.41 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc----CCCcEEEEeeCCCC
Q 037064 88 KIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP----KGQITIGVTAGAST 163 (187)
Q Consensus 88 ~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~IGITAGAST 163 (187)
.+|++|+.-|-..- ...+++.|+++|++.-.+++++.-+ -++| .+.-.||||++..+
T Consensus 72 ~~~lVi~at~~~~~-n~~i~~~a~~~~i~vn~~d~~e~~~------------------~~~pa~~~~~~l~iaIsT~Gks 132 (457)
T 1pjq_A 72 SCWLAIAATDDDTV-NQRVSDAAESRRIFCNVVDAPKAAS------------------FIMPSIIDRSPLMVAVSSGGTS 132 (457)
T ss_dssp TCSEEEECCSCHHH-HHHHHHHHHHTTCEEEETTCTTSSS------------------EECCEEEEETTEEEEEECTTSC
T ss_pred CccEEEEcCCCHHH-HHHHHHHHHHcCCEEEECCCcccCc------------------eEeeeEEEeCCeEEEEECCCCC
Confidence 46766664443323 4678999999997744444443221 2221 35568999998888
Q ss_pred cH
Q 037064 164 PD 165 (187)
Q Consensus 164 P~ 165 (187)
|-
T Consensus 133 p~ 134 (457)
T 1pjq_A 133 PV 134 (457)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 159
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=44.92 E-value=9.4 Score=32.28 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=44.6
Q ss_pred cccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHH-HHhCCCeEEeCCCCCC
Q 037064 61 NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIA-EDRGIPSYWIDSEKRI 126 (187)
Q Consensus 61 ~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia-~~~g~~t~~Ie~~~eL 126 (187)
..++.++||=|... ..++++|.+ -.+.+|||...|+|+..+.+++ .+.++|..-....+.+
T Consensus 32 ~i~l~~~D~~~~~a---~~~~~~l~~--~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~ 93 (325)
T 2h4a_A 32 TIPVQVFDTSMNSV---QDIIAQAKQ--AGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS 93 (325)
T ss_dssp CSCEEEEETTTSCH---HHHHHHHHH--TTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSC
T ss_pred CceEEEEECCCChH---HHHHHHHHH--CCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccc
Confidence 45788899998642 455556653 3566789999999999999998 6778887765554443
No 160
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=43.99 E-value=32 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=31.2
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++.- -+|.++..+++.|+++|.++..|.+..+
T Consensus 95 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 95 TPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 36788888864 4677888889999999999999987543
No 161
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=43.90 E-value=79 Score=24.46 Aligned_cols=121 Identities=8% Similarity=0.048 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|..+.+.+++...+ .| -++.++++- . .++| +.++.|....+|.+| ++...+ .
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~-~--~~~~~~~~~~l~~~~vdgiI-~~~~~~--~ 72 (280)
T 3gyb_A 6 QLIAVLIDD-YSNPWFIDLIQSLSDVLTP-KG-----YRLSVIDSL-T--SQAGTDPITSALSMRPDGII-IAQDIP--D 72 (280)
T ss_dssp CEEEEEESC-TTSGGGHHHHHHHHHHHGG-GT-----CEEEEECSS-S--SCSSSCHHHHHHTTCCSEEE-EESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHH-CC-----CEEEEEeCC-C--chHHHHHHHHHHhCCCCEEE-ecCCCC--h
Confidence 578888765 3444567777777664322 22 223333222 1 1222 234445556899999 776544 2
Q ss_pred HHHHHHHHHhCCCeEEeCCCC-CCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEK-RIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~-eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
..+.. .|+|...++... +-.....+..-... +.... ...+..|.++||+-+|...
T Consensus 73 ~~~~~----~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~-~~L~~~G~~~i~~i~~~~~ 129 (280)
T 3gyb_A 73 FTVPD----SLPPFVIAGTRITQASTHDSVANDDFRGAEIAT-KHLIDLGHTHIAHLRVGSG 129 (280)
T ss_dssp ----------CCCEEEESCCCSSSCSTTEEEECHHHHHHHHH-HHHHHTTCCSEEEECCSSH
T ss_pred hhHhh----cCCCEEEECCCCCCCCCCCEEEechHHHHHHHH-HHHHHCCCCeEEEEeCCCc
Confidence 23322 789999998765 22221111111111 22211 1112247889999988654
No 162
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=43.82 E-value=20 Score=25.71 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=32.5
Q ss_pred HhhhcCCCEEEEEcCCCChhhHH-HHHHHHHhCCCeE-EeCCCCCCC
Q 037064 83 KLVEEKIDLILVVGGWNSSNTSS-LQVIAEDRGIPSY-WIDSEKRIG 127 (187)
Q Consensus 83 ~La~~~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~-~Ie~~~eL~ 127 (187)
.|-.+++-++|+-.+- |.|+++ +-.+|...++|.+ ++.+-.||-
T Consensus 33 ai~~gkaklVilA~D~-~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG 78 (105)
T 3u5e_c 33 SLRQGKSKLIIIAANT-PVLRKSELEYYAMLSKTKVYYFQGGNNELG 78 (105)
T ss_dssp HHHTTCCSEEEECTTS-CHHHHHHHHHHHHHHTCEEEECSSCHHHHH
T ss_pred HHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEeCCCHHHHH
Confidence 3334578888777776 566654 5568999999998 589999985
No 163
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=43.49 E-value=22 Score=28.30 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=55.4
Q ss_pred HHHHh--hhcCCCEEEEEcCCCChh-------hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchh-------hhh
Q 037064 80 AVYKL--VEEKIDLILVVGGWNSSN-------TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGE-------LVE 143 (187)
Q Consensus 80 av~~L--a~~~~D~miVVGG~nSSN-------T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~-------~~~ 143 (187)
+++.| -++++-++|+.++-.... ...|..+|.++++|-.+|++..+|-.. -|- -+.
T Consensus 43 t~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a--------~Gi~~~~~~~~~d 114 (165)
T 2kg4_A 43 AAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAEL--------LLLETDAGPAASE 114 (165)
T ss_dssp HHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHH--------HHHTTTCSSCCCC
T ss_pred HHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHH--------HCCcccccccccc
Confidence 44555 445677777777765444 445779999999999999999888420 000 000
Q ss_pred hhccccCCCcEEEEeeCCCCc--HHHHHHHHHHHHhcc
Q 037064 144 KENWLPKGQITIGVTAGASTP--DKAIEGVLKKVFEIK 179 (187)
Q Consensus 144 ~~~wl~~~~~~IGITAGASTP--~~lI~eVi~~l~~~~ 179 (187)
....- ..+.+|.|+--.+.. ....+.+.++++++.
T Consensus 115 ~~g~~-r~~scv~V~~~g~~s~~~~a~~~l~~~~~e~r 151 (165)
T 2kg4_A 115 GAEQP-PDLHCVLVTNPHSSQWKDPALSQLICFCRESR 151 (165)
T ss_dssp SSCCC-SCSCEEEEECCSSCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCc-ccceEEEEeccccccccchHHHHHHHHHHHhh
Confidence 11111 246788887544433 345677888887653
No 164
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=43.28 E-value=7.3 Score=28.94 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=45.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCC--CCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHH
Q 037064 91 LILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKR--IGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAI 168 (187)
Q Consensus 91 ~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~e--L~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI 168 (187)
.-||+..+++.--..|.+-|++.|.+++.|.++.- +++ .....+|| .=.|.+.|
T Consensus 52 ~KVvlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG~Tqi~~---------------------gt~Tvlai---gP~~~~~v 107 (117)
T 1q7s_A 52 PKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAP---------------------GSQTVLGI---GPGPADLI 107 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCCEEEEEECSSSSEEE---------------------EEEEEEEE---EEEEHHHH
T ss_pred eeEEEEcCCHHHHHHHHHHHHHCCCCEEEEEECCCcccCC---------------------CCeEEEEe---ccCCHHHH
Confidence 67888888888888999999999999999988764 433 23446676 34577888
Q ss_pred HHHHHHH
Q 037064 169 EGVLKKV 175 (187)
Q Consensus 169 ~eVi~~l 175 (187)
++|...|
T Consensus 108 d~itg~l 114 (117)
T 1q7s_A 108 DKVTGHL 114 (117)
T ss_dssp HHHHTTS
T ss_pred HHhcCCC
Confidence 8776543
No 165
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=43.05 E-value=32 Score=25.82 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=31.1
Q ss_pred cCCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++.. -++.++..+++.|+++|.++..|.+..+
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 35788888764 5567888899999999999999988643
No 166
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=42.89 E-value=57 Score=27.68 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=50.9
Q ss_pred cCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEeeCCCCc
Q 037064 87 EKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVTAGASTP 164 (187)
Q Consensus 87 ~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGITAGASTP 164 (187)
+++-++|+-++-.... ...|..+|++.|+|.+++.+-.+|- .|.- ..+.+|+||--.+--
T Consensus 146 gKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG------------------~A~Gkk~~s~VAItD~g~eD 207 (256)
T 3izc_H 146 KKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG------------------TLVNQKTSAVAALTEVRAED 207 (256)
T ss_dssp TCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHH------------------HHTTCSSCCSEEEESSCCSC
T ss_pred CcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH------------------HHhCCCCcEEEEeecCChhh
Confidence 4566766666654433 3456799999999999999999984 3331 246789999766554
Q ss_pred HHHHHHHHHHHHh
Q 037064 165 DKAIEGVLKKVFE 177 (187)
Q Consensus 165 ~~lI~eVi~~l~~ 177 (187)
......+++.+..
T Consensus 208 k~al~kLve~ikt 220 (256)
T 3izc_H 208 EAALAKLVSTIDA 220 (256)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4556777877764
No 167
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=42.57 E-value=71 Score=24.39 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=36.3
Q ss_pred HHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 77 RQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
.+.-+..|. +||+||++.+..|++|.-=+-.|...|+|.+.+.+.+
T Consensus 68 ~~~d~~~i~--~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 68 HEQDLNWLQ--QADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHHHHHHHH--HCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTT
T ss_pred HHHHHHHHH--hCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCC
Confidence 334444453 6999999999999999988888999999998885444
No 168
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=42.29 E-value=22 Score=29.84 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVT 158 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGIT 158 (187)
..++.|. . .+-+.||-|++-.+-.+|.+.+++. ++.......+++. +++ ...-+.||
T Consensus 175 ~vl~~L~-~-~~~i~vv~G~~~~~~~~l~~~~~~~-~~v~v~~~~~~m~------------------~~m--~~aDlvI~ 231 (282)
T 3hbm_A 175 QIASELP-K-TKIISIATSSSNPNLKKLQKFAKLH-NNIRLFIDHENIA------------------KLM--NESNKLII 231 (282)
T ss_dssp HHHHHSC-T-TSCEEEEECTTCTTHHHHHHHHHTC-SSEEEEESCSCHH------------------HHH--HTEEEEEE
T ss_pred HHHHHhh-c-CCCEEEEECCCchHHHHHHHHHhhC-CCEEEEeCHHHHH------------------HHH--HHCCEEEE
Confidence 3444454 2 2335555566666777777766543 3454455555553 445 23457788
Q ss_pred eCCCCcHH
Q 037064 159 AGASTPDK 166 (187)
Q Consensus 159 AGASTP~~ 166 (187)
+|++|-.+
T Consensus 232 ~gG~T~~E 239 (282)
T 3hbm_A 232 SASSLVNE 239 (282)
T ss_dssp ESSHHHHH
T ss_pred CCcHHHHH
Confidence 88876443
No 169
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=42.10 E-value=25 Score=30.32 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=35.0
Q ss_pred hhcHHHHHHHHHHHHhh-hcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 69 TICHAAQERQDAVYKLV-EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 69 TIC~AT~~RQ~av~~La-~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+....|......+.++. +.+.|+++|+|++++.-...| .|+..|+|.+|++..
T Consensus 94 ~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~l--aA~~~~IPv~h~~ag 147 (403)
T 3ot5_A 94 TLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGL--ATFYQQKMLGHVEAG 147 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHH--HHHHTTCEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHH--HHHHhCCCEEEEECC
Confidence 44444455544444443 347999999999887643333 567789999999853
No 170
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=41.82 E-value=26 Score=30.83 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=41.2
Q ss_pred cccccchhcHHHHHHHHHHHHhhhcC-----------------------CCEEEEEcCCCChhhHHHHHHHHHhCCCeE
Q 037064 63 HFISFNTICHAAQERQDAVYKLVEEK-----------------------IDLILVVGGWNSSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~~~-----------------------~D~miVVGG~nSSNT~rL~eia~~~g~~t~ 118 (187)
.+.++|+-|..+.--+.+. +|..+. -.++.|||+..|+-+..+..++...++|-.
T Consensus 67 ~~~i~D~~~~~~~a~~~~~-~ll~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~I 144 (479)
T 3sm9_A 67 GVHILDTCSRDTYALEQSL-EFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQI 144 (479)
T ss_dssp EEEEEECTTCHHHHHHHHH-HHHHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEE
T ss_pred eEEEEecCCChHHHHHHHH-HHHhCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEE
Confidence 4668888777766655555 444331 248889999999999999999999998843
No 171
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=41.69 E-value=1.1e+02 Score=23.77 Aligned_cols=119 Identities=9% Similarity=-0.013 Sum_probs=59.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS 104 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~ 104 (187)
..||++... +.-.-|..+...+++...+ .| -++.++++ ....++|.. + .+|.+|+.+...+.
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~---~---~vdgiI~~~~~~~~--- 70 (277)
T 3cs3_A 9 NIIGVYLAD-YGGSFYGELLEGIKKGLAL-FD-----YEMIVCSG--KKSHLFIPE---K---MVDGAIILDWTFPT--- 70 (277)
T ss_dssp CEEEEEECS-SCTTTHHHHHHHHHHHHHT-TT-----CEEEEEES--TTTTTCCCT---T---TCSEEEEECTTSCH---
T ss_pred cEEEEEecC-CCChhHHHHHHHHHHHHHH-CC-----CeEEEEeC--CCCHHHHhh---c---cccEEEEecCCCCH---
Confidence 478888754 3444567777777653222 22 12222211 111122211 1 69999999864332
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccc-cCCCcEEEEeeCCCC
Q 037064 105 SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWL-PKGQITIGVTAGAST 163 (187)
Q Consensus 105 rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl-~~~~~~IGITAGAST 163 (187)
..++.+.+.|+|...++...+-.....+...... +.... +|| ..|.++||+.+|...
T Consensus 71 ~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~--~~L~~~G~~~i~~i~~~~~ 129 (277)
T 3cs3_A 71 KEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAI--EQFVNVGSKKVLLLSGPEK 129 (277)
T ss_dssp HHHHHHHHTTCEEEESSSCCCSTTEEEEEECHHHHHHHHH--HHHHHTTCSCEEEEECCTT
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCEEEeCcHHHHHHHH--HHHHHcCCceEEEEeCCcc
Confidence 3334455688999998764321110011100011 12111 222 247889999988754
No 172
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=41.20 E-value=30 Score=30.54 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=42.1
Q ss_pred cccccchhcHHHHHHHHHHHHhhh--------------------------cCCCEEEEEcCCCChhhHHHHHHHHHhCCC
Q 037064 63 HFISFNTICHAAQERQDAVYKLVE--------------------------EKIDLILVVGGWNSSNTSSLQVIAEDRGIP 116 (187)
Q Consensus 63 ~~~~~nTIC~AT~~RQ~av~~La~--------------------------~~~D~miVVGG~nSSNT~rL~eia~~~g~~ 116 (187)
.+.++|+-|..+.-.+.+..=+.. .+-.++.|||+..|+.+..+..++...++|
T Consensus 75 g~~i~D~~~~~~~a~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP 154 (496)
T 3ks9_A 75 GSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIP 154 (496)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCC
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhccee
Confidence 466889888777776666644310 134588999999999999999999999988
Q ss_pred eE
Q 037064 117 SY 118 (187)
Q Consensus 117 t~ 118 (187)
-.
T Consensus 155 ~I 156 (496)
T 3ks9_A 155 QI 156 (496)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 173
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=40.98 E-value=48 Score=28.18 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCCCEEEEEcCC-CChhhHHHHHHHHHhCCCeEEeCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGW-NSSNTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~-nSSNT~rL~eia~~~g~~t~~Ie~ 122 (187)
+.|...+. ++|++||||-- +-.=..+|...+++.|.+.+.|+-
T Consensus 208 ~~a~~~~~--~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 251 (290)
T 3u31_A 208 KEAEEEIA--KCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINI 251 (290)
T ss_dssp HHHHHHHH--HCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHh--cCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECC
Confidence 34444443 69999999963 223456788888888888888864
No 174
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=40.52 E-value=35 Score=26.33 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=31.2
Q ss_pred CCCEEEEEcC-CCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 88 KIDLILVVGG-WNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 88 ~~D~miVVGG-~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
+-|++|+|.. -++.++..+++.|+++|.++..|.+..+
T Consensus 89 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 89 DQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5688888864 5678888999999999999999988643
No 175
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=39.92 E-value=25 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=30.9
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~e 125 (187)
.+-|++|++. +-++.++..+++.|+++|.++..|.+..+
T Consensus 91 ~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 130 (201)
T 3fxa_A 91 QKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPD 130 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3679988884 34677888888999999999999987544
No 176
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=39.28 E-value=23 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++|+||..|.=|.-=-+++.+ |.+.++|.++.-.|
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCC
Confidence 789999999999877778877 88888898876444
No 177
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=38.92 E-value=8 Score=30.27 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=39.3
Q ss_pred CCChhhHHHHHHHH---HhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccC-CCcEEEEeeCCC-CcHHHHHHHH
Q 037064 98 WNSSNTSSLQVIAE---DRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPK-GQITIGVTAGAS-TPDKAIEGVL 172 (187)
Q Consensus 98 ~nSSNT~rL~eia~---~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~-~~~~IGITAGAS-TP~~lI~eVi 172 (187)
..-+|+.-|.++.+ +.|...++.-=++|.+. |. ..-..|+.. ++..|=+|+|.| ||++++.+++
T Consensus 22 i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~---I~--------~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~ 90 (178)
T 2pbq_A 22 YEDISGKAIIDYLKDVIITPFEVEYRVIPDERDL---IE--------KTLIELADEKGCSLILTTGGTGPAPRDVTPEAT 90 (178)
T ss_dssp SCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHH---HH--------HHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHH
T ss_pred eecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHH---HH--------HHHHHHHhcCCCCEEEECCCCCCCCCCchHHHH
Confidence 45689999999998 78865432211122110 10 122355521 566674444444 7888888888
Q ss_pred HHHH
Q 037064 173 KKVF 176 (187)
Q Consensus 173 ~~l~ 176 (187)
..+.
T Consensus 91 ~~~~ 94 (178)
T 2pbq_A 91 EAVC 94 (178)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8773
No 178
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=38.42 E-value=57 Score=27.16 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=48.9
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCC-----
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQ----- 152 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~----- 152 (187)
.+++..|..+++|+++..+|..++....+ .+.-+.+..-|.+...... +.-.+--.|...+...++ +.
T Consensus 185 ~~a~~aL~~G~vDa~~~~~~~p~~~~~~~---~~~g~lr~L~v~~~~r~~~---~p~~Pt~~~~~ip~g~~~-~~~dv~t 257 (327)
T 4ddd_A 185 SEQAQALCDNKIDVMVDVIGHPNASIQEA---SATCDIKFIPLDDRLIDDL---HAKYPYYQKDIISGGLYN-DSPDIQT 257 (327)
T ss_dssp HHHHHHHHTTSCSBEEEEECSSCHHHHHH---HHHSCEEECCCCHHHHHHH---HHHCTTCEEEEECSCSSS-SCCCEEE
T ss_pred HHHHHHHHcCCCCEEEEccCCCcHHHHHH---HhcCCeEEEeCCHHHHHHH---HHhCCCceEEEeCCCCCC-CCCCcce
Confidence 46677787789999999887655544443 3333333333333210000 000000000000011121 11
Q ss_pred --cEEEEeeCCCCcHHHHHHHHHHHHh
Q 037064 153 --ITIGVTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 153 --~~IGITAGASTP~~lI~eVi~~l~~ 177 (187)
...|+.+-+.||+.++.++.+.|.+
T Consensus 258 ~~~~~~l~ap~~~p~~vv~~l~~a~~e 284 (327)
T 4ddd_A 258 VSVKASLVTTTELSNDLAYKIVKSIAT 284 (327)
T ss_dssp EEEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred eeeeeEEEEcCCCCHHHHHHHHHHHHh
Confidence 2458889999999999999998865
No 179
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=38.42 E-value=1.1e+02 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=38.9
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDS 122 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~ 122 (187)
.-||+.+..--+++++.+...++-+.|+||- |++.-+.++-.. .|.|....+.
T Consensus 382 Egia~~~r~~le~l~~~~g~~~~~i~v~GGg--aks~~~~Qi~ADvlg~pV~~~~~ 435 (526)
T 3ezw_A 382 ESIAYQTRDVLEAMQADSGIRLHALRVDGGA--VANNFLMQFQSDILGTRVERPEV 435 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSEEEEESGG--GGCHHHHHHHHHHHTSEEEEESC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEECch--hhCHHHHHHHHHHHCCEEEeCCC
Confidence 4489999988888887664578999999996 455667776655 4677665544
No 180
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=37.64 E-value=19 Score=33.20 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhcCCCEEEEEcCCCChh-hHHHHHHHHHhCCCeEEeCCCCCCC
Q 037064 76 ERQDAVYKLVEEKIDLILVVGGWNSSN-TSSLQVIAEDRGIPSYWIDSEKRIG 127 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG~nSSN-T~rL~eia~~~g~~t~~Ie~~~eL~ 127 (187)
++++++..|-+..+|.+|||||-.|-. ..+|.+.++++|.+.-.|-=+.-||
T Consensus 177 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTID 229 (487)
T 2hig_A 177 DPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTID 229 (487)
T ss_dssp CHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTT
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 456888888777899999999988844 4678888888874433344455565
No 181
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=36.69 E-value=17 Score=29.75 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=39.3
Q ss_pred cccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC-CCeEEeCCCCCC
Q 037064 61 NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG-IPSYWIDSEKRI 126 (187)
Q Consensus 61 ~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g-~~t~~Ie~~~eL 126 (187)
..++.++||=|..+. ++.+++. +-.+.+|||+..|+++..+.....+.+ ++...-.+.+.+
T Consensus 34 ~i~l~~~D~~~~~~~----aa~~~~~-~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~ 95 (327)
T 3ckm_A 34 TIPVQVFDTSMNSVQ----DIIAQAK-QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS 95 (327)
T ss_dssp CSCEEEEETTTSCHH----HHHHHHH-HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC
T ss_pred CceEEEEeCCCCHHH----HHHHHHH-HcCCeEEEEccccccchhhHHHHHhccCceEeccCcCccc
Confidence 456888999887643 3344442 356667899999999998877665554 444443444433
No 182
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=36.60 E-value=45 Score=26.44 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=52.7
Q ss_pred CCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCC--CCc
Q 037064 88 KIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGA--STP 164 (187)
Q Consensus 88 ~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGA--STP 164 (187)
..|..+++. |.-|.=|.-=++.|+++++|-++|+= +++.+ .........||......|--.||- |.-
T Consensus 73 DSDgTLI~~~g~lsGGT~lT~~~a~~~~KP~l~i~l-~~~~~---------~~~~~~v~~wl~~~~i~vLNVAGPReS~~ 142 (158)
T 3imk_A 73 DSDGTLIISHGILKGGSALTEFFAEQYKKPCLHIDL-DRISI---------EDAATLINSWTVSHHIQVLNIAGPRAGKD 142 (158)
T ss_dssp TSSEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEET-TTSCH---------HHHHHHHHHHHHHTTCCEEEEECCCTTTC
T ss_pred hcCeEEEEecCCCCCchHHHHHHHHHhCCCEEEEec-ccccc---------cchHHHHHHHHHHCCceEEEeccCcccCC
Confidence 599999999 99999999999999999999998863 33221 011134457985444455556773 444
Q ss_pred HHHHHHHHHHHH
Q 037064 165 DKAIEGVLKKVF 176 (187)
Q Consensus 165 ~~lI~eVi~~l~ 176 (187)
..+-..+...|.
T Consensus 143 PgI~~~~~~~L~ 154 (158)
T 3imk_A 143 PEIYQATMDLLE 154 (158)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 445555544443
No 183
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=36.54 E-value=11 Score=30.44 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=19.2
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
.+..|. .+|.+++=|| |+.+|.+.-++.|
T Consensus 73 ~~~~l~--~ad~I~lpGG----~~~~~~~~l~~~g 101 (229)
T 1fy2_A 73 PLAAIE--KAEIIIVGGG----NTFQLLKESRERG 101 (229)
T ss_dssp HHHHHH--HCSEEEECCS----CHHHHHHHHHHTT
T ss_pred HHHHHh--cCCEEEECCC----cHHHHHHHHHHCC
Confidence 345565 4897766664 6777777777765
No 184
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=36.42 E-value=30 Score=30.66 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=30.3
Q ss_pred HHHHHhhhcCCCEEEEEcCCCC-hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNS-SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nS-SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+.+.+.+ .++|++||||-.-. .=...|..++.+.|.+.+.|+-.
T Consensus 198 ~~A~~~~-~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~ 242 (355)
T 3pki_A 198 ALADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQ 242 (355)
T ss_dssp HHHHHHH-HHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSS
T ss_pred HHHHHHH-hcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCC
Confidence 3344555 36999999997421 12346778888899888888643
No 185
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=36.35 E-value=20 Score=34.79 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHh---CCCeEEe
Q 037064 71 CHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDR---GIPSYWI 120 (187)
Q Consensus 71 C~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~---g~~t~~I 120 (187)
|.....|+++++.|-+...|.+|||||-.|-.+ .+|.+.++.+ |+|...|
T Consensus 472 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgi 525 (762)
T 3o8l_A 472 TLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVI 525 (762)
T ss_dssp CCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEee
Confidence 444568999999998889999999999888655 4555555442 5555444
No 186
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.09 E-value=47 Score=28.36 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHhhhcCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEee
Q 037064 82 YKLVEEKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVTA 159 (187)
Q Consensus 82 ~~La~~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGITA 159 (187)
..|-.+.+-++|+-++-....- .+|-.+|+..|+|.+++.+-.+|- .|.- ..+.+|+||-
T Consensus 145 KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG------------------~A~Gkk~~s~VAItD 206 (266)
T 2zkr_f 145 TLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG------------------HLVHRKTCTTVAFTQ 206 (266)
T ss_dssp HHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHH------------------HHHTSSCCSEEEETT
T ss_pred HHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHH------------------HHhCCCCceEEEEee
Confidence 3344457778777777644333 346799999999999999988884 3331 2467799975
Q ss_pred CCCCcHHHHHHHHHHHH
Q 037064 160 GASTPDKAIEGVLKKVF 176 (187)
Q Consensus 160 GASTP~~lI~eVi~~l~ 176 (187)
-.+.-..-...+++.|.
T Consensus 207 ~G~eD~~al~klve~ik 223 (266)
T 2zkr_f 207 VNSEDKGALAKLVEAIR 223 (266)
T ss_dssp CSSTTTTHHHHHHHHHC
T ss_pred cCcchHHHHHHHHHHHH
Confidence 54433334555666554
No 187
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=35.64 E-value=43 Score=27.98 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=29.4
Q ss_pred HHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeCC
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie~ 122 (187)
+.+.+.+ .++|++||||---.- =...|...+.+.|.+...|+-
T Consensus 204 ~~a~~~~-~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 247 (273)
T 3riy_A 204 EEVDREL-AHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNT 247 (273)
T ss_dssp HHHHHHH-HHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEES
T ss_pred HHHHHHH-hcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECC
Confidence 3334445 369999999974321 235677778888989888874
No 188
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=34.80 E-value=42 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=31.8
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
.+-|++|+|. +-+|.++..+++.|+++|.++.-|.+.
T Consensus 107 ~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 107 TNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp CTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679988886 467889999999999999999999876
No 189
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=34.79 E-value=1.8e+02 Score=23.33 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=62.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++.... .-.-|.++.+.+++...+ .| -++.++++ ....++| +.++.|....+|.+| .+...+.
T Consensus 61 ~~Igvi~~~~-~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~-- 128 (330)
T 3ctp_A 61 KTIGLMVPNI-SNPFFNQMASVIEEYAKN-KG-----YTLFLCNT--DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE-- 128 (330)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS--
T ss_pred CEEEEEeCCC-CCcHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH--
Confidence 4689887553 344567777777654332 22 12333222 2223344 345556556899999 8754332
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCC
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGAST 163 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGAST 163 (187)
.. +.+.|+|...++...+- ....+..-... +....+. .+..|.++||+-.|...
T Consensus 129 ~~----l~~~~iPvV~~~~~~~~-~~~~V~~D~~~~~~~a~~~-L~~~G~~~I~~i~~~~~ 183 (330)
T 3ctp_A 129 DE----YANIDIPVVAFENHILD-NIITISSDNYNGGRMAFDH-LYEKGCRKILHIKGPEV 183 (330)
T ss_dssp GG----GTTCCSCEEEESSCCCT-TSCEEEECHHHHHHHHHHH-HHHTTCCSEEEEECCTT
T ss_pred HH----HHhcCCCEEEEeccCCC-CCCEEEeCHHHHHHHHHHH-HHHCCCCeEEEEeCCcc
Confidence 22 34678999888764321 11111111111 1222111 12247889999998654
No 190
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=34.30 E-value=1.8e+02 Score=23.32 Aligned_cols=84 Identities=6% Similarity=0.033 Sum_probs=46.5
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhh--hchhh-hhhhccccCCCcEEEEeeCCCCcHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKL--MHGEL-VEKENWLPKGQITIGVTAGASTPDK 166 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~--~~~~~-~~~~~wl~~~~~~IGITAGASTP~~ 166 (187)
.++.|||+..|+.+..+..++...++|-. ......+.......+. ..... ..-...| +-+.|+|..-.+.--.
T Consensus 69 ~V~aiiG~~~S~~~~~v~~i~~~~~ip~i--s~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~--~w~~vaii~~~d~~~~ 144 (389)
T 4gpa_A 69 GVFAIFGLYDKRSVHTLTSFCSALHISLI--TPSFPTEGESQFVLQLRPSLRGALLSLLDHY--EWNCFVFLYDTDRGYS 144 (389)
T ss_dssp TCSEEEECCCTTTHHHHHHHHHHTTCEEE--ECSCCCSSCCSSEEECSCCCHHHHHHHHHHT--TCCEEEEEECSTTCSH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHhCCCce--eccccccccccCCccccCCHHHHHHHHHHHc--CCcEEEEEEecchhhH
Confidence 35667899999999999999999988743 2222222111111111 11122 2222333 4567888765554445
Q ss_pred HHHHHHHHHHh
Q 037064 167 AIEGVLKKVFE 177 (187)
Q Consensus 167 lI~eVi~~l~~ 177 (187)
.++++.+.+.+
T Consensus 145 ~~~~~~~~~~~ 155 (389)
T 4gpa_A 145 ILQAIMEKAGQ 155 (389)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 191
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=34.24 E-value=59 Score=27.51 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=15.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 037064 26 KVGIANQTTMIKGETEEIGKLVEK 49 (187)
Q Consensus 26 kv~vvsQTT~~~~~~~~i~~~l~~ 49 (187)
||+++...... .+++.++|++
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~ 51 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKR 51 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHH
T ss_pred EEEEEeCCcHH---HHHHHHHHHH
Confidence 68999887765 6667666765
No 192
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=33.52 E-value=56 Score=31.88 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHhhhcCCCEEEEEcCCCC---------------hhhHHHHHHHHHhCCCeEEe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNS---------------SNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nS---------------SNT~rL~eia~~~g~~t~~I 120 (187)
+++.++| +.+|++||+.|.++ .+-..|.+-..+.|+|+..|
T Consensus 565 ~~Av~~A-~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~tVVV 620 (845)
T 3abz_A 565 RNAAELA-AKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIV 620 (845)
T ss_dssp HHHHHHH-HTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHH-hcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCCEEEE
Confidence 3444677 48999999998875 25677888777888887533
No 193
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=33.07 E-value=97 Score=22.98 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHH-HHHHHHHhCCCeEEeC-CCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSS-LQVIAEDRGIPSYWID-SEKR 125 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~~Ie-~~~e 125 (187)
++++..|. +.+-++++|--.|.+.-. +.......|.+++.+. +..+
T Consensus 30 ~~~~~~i~--~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~ 77 (187)
T 3sho_A 30 EAAVEAIC--RADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGST 77 (187)
T ss_dssp HHHHHHHH--HCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHH
T ss_pred HHHHHHHH--hCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchh
Confidence 45666665 478999999887777544 3334456789999888 4443
No 194
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=33.06 E-value=21 Score=28.56 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred EEEEEcCCCCh------hhHHHHHHHHHhCCC------eEEeCCCCCCCCCCcchhhhhchhhhhhhccccC--CCcEEE
Q 037064 91 LILVVGGWNSS------NTSSLQVIAEDRGIP------SYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPK--GQITIG 156 (187)
Q Consensus 91 ~miVVGG~nSS------NT~rL~eia~~~g~~------t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~--~~~~IG 156 (187)
.+|.+|+.-+. |+.-|.+..++.|.. ...=++.++|.. .-..|+ . ++..|=
T Consensus 7 ~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~--------------al~~a~-~~~~~DlVi 71 (195)
T 1di6_A 7 GLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQ--------------TLCELV-DEMSCHLVL 71 (195)
T ss_dssp EEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHH--------------HHHHHH-HTSCCSEEE
T ss_pred EEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHH--------------HHHHHH-hcCCCCEEE
Q ss_pred EeeCCC-CcHHHHHHHHHHH
Q 037064 157 VTAGAS-TPDKAIEGVLKKV 175 (187)
Q Consensus 157 ITAGAS-TP~~lI~eVi~~l 175 (187)
.|+|+| +|++++.+++..+
T Consensus 72 tTGGtg~g~~D~T~ea~~~~ 91 (195)
T 1di6_A 72 TTGGTGPARRDVTPDATLAV 91 (195)
T ss_dssp EESCCSSSTTCCHHHHHHHT
T ss_pred ECCCCCCCCCccHHHHHHHH
No 195
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=32.21 E-value=94 Score=23.15 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=5.8
Q ss_pred CCCEEEEEcCC
Q 037064 88 KIDLILVVGGW 98 (187)
Q Consensus 88 ~~D~miVVGG~ 98 (187)
++|++|+.|+-
T Consensus 32 ~~D~vi~~GDl 42 (228)
T 1uf3_A 32 GADAIALIGNL 42 (228)
T ss_dssp TCSEEEEESCS
T ss_pred CCCEEEECCCC
Confidence 35555555553
No 196
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=31.48 E-value=1.1e+02 Score=23.65 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhcCCCEEEEEcC---CCC--hhhHHHHHHHHHhCCCeE
Q 037064 76 ERQDAVYKLVEEKIDLILVVGG---WNS--SNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG---~nS--SNT~rL~eia~~~g~~t~ 118 (187)
-||.-+..++.+++|+||..=+ +.+ .....|...|-.+++|.+
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 5888888999899999999865 444 588999999999998754
No 197
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=31.39 E-value=71 Score=27.11 Aligned_cols=72 Identities=8% Similarity=0.181 Sum_probs=48.8
Q ss_pred cCCCEEEEEcCCCChhh-H-HHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhcccc-CCCcEEEEeeCCCC
Q 037064 87 EKIDLILVVGGWNSSNT-S-SLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLP-KGQITIGVTAGAST 163 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT-~-rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~IGITAGAST 163 (187)
+++-++|+-++- |.|+ . +|-.+|++.|+|-++|.+-.+|- .|.- ..+.+|+||-=.+-
T Consensus 139 gKAqLVVIA~Dv-dPielv~~LPaLCee~~VPY~~V~sK~~LG------------------~avGrKt~s~Vaitdv~~E 199 (255)
T 4a17_F 139 KQAKLVVIAHDV-DPIELVIFLPQLCRKNDVPFAFVKGKAALG------------------KLVNKKTATAVALTEVRNE 199 (255)
T ss_dssp SCCSEEEEESCC-SSTHHHHHHHHHHHHTTCCEEEESCHHHHH------------------HHHTSSCCSEEEECCCCHH
T ss_pred CCceEEEEeCCC-ChHHHHHHHHHHHHHcCCCEEEECCHHHHH------------------HHhCCCcceEEEeeccCHH
Confidence 456666666655 4454 3 56699999999999999999984 3431 23567999865543
Q ss_pred cHHHHHHHHHHHHh
Q 037064 164 PDKAIEGVLKKVFE 177 (187)
Q Consensus 164 P~~lI~eVi~~l~~ 177 (187)
-......+++.+..
T Consensus 200 Dk~al~kLve~ikt 213 (255)
T 4a17_F 200 DKAKLQQFSELFKT 213 (255)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33556777777764
No 198
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=31.26 E-value=18 Score=28.09 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=36.1
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHH-HHHH--HhCCCeEEeCCCCCCC
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQ-VIAE--DRGIPSYWIDSEKRIG 127 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~-eia~--~~g~~t~~Ie~~~eL~ 127 (187)
+++.|-++++-++|+-++-.-.|..+|+ .+|. ++++|-+++.+..+|-
T Consensus 48 t~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG 98 (143)
T 3u5c_M 48 STKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLG 98 (143)
T ss_dssp HHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHH
T ss_pred HHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHh
Confidence 3344444678888888777656666664 6999 9999999999988884
No 199
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=31.11 E-value=1.5e+02 Score=26.35 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=38.3
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDS 122 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~ 122 (187)
..||+.+..--++++++. ..++-++|+||- |++.-+.++-.. .|.|.+..+.
T Consensus 374 Egia~~~r~~~~~l~~~g-~~~~~i~~~GGg--a~s~~~~Qi~ADv~g~pV~~~~~ 426 (504)
T 3ll3_A 374 EGIIFNLYDAASNLIKNT-KKPVAINATGGF--LKSDFVRQLCANIFNVPIVTMKE 426 (504)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCCSEEEEESGG--GCSHHHHHHHHHHHTSCEEEESC
T ss_pred HHHHHHHHHHHHHHHHcC-CCCCEEEEeCch--hcCHHHHHHHHHhhCCeEEecCC
Confidence 458888888888888876 578999999994 455666666555 5778776554
No 200
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=30.96 E-value=36 Score=24.23 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=29.7
Q ss_pred hcCCCEEEEEcCCCChhh-HHHHHHHHHhCCCeE-EeCCCCCCC
Q 037064 86 EEKIDLILVVGGWNSSNT-SSLQVIAEDRGIPSY-WIDSEKRIG 127 (187)
Q Consensus 86 ~~~~D~miVVGG~nSSNT-~rL~eia~~~g~~t~-~Ie~~~eL~ 127 (187)
.+++-++|+-.+-. .|+ ++|..+|...++|.+ ++.+-.||-
T Consensus 36 ~gkaklViiA~D~~-~~~~~~i~~~c~~~~ip~~~~~~s~~eLG 78 (104)
T 4a18_G 36 NGTAKLVFISNNCP-TVRKSEIEYYASLAQISIHHFVGSNVELG 78 (104)
T ss_dssp HTCCCEEEECTTSC-HHHHHHHHHHHHHHTCEEEECSSCHHHHH
T ss_pred cCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEEecCCHHHHH
Confidence 35677766666554 555 455667999999999 599999995
No 201
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=30.38 E-value=79 Score=26.47 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=11.5
Q ss_pred cCCCEEEEEcCCCC
Q 037064 87 EKIDLILVVGGWNS 100 (187)
Q Consensus 87 ~~~D~miVVGG~nS 100 (187)
..+|++||+||=-.
T Consensus 81 ~~~d~vvv~GGDGT 94 (332)
T 2bon_A 81 FGVATVIAGGGDGT 94 (332)
T ss_dssp HTCSEEEEEESHHH
T ss_pred cCCCEEEEEccchH
Confidence 47999999999544
No 202
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=30.17 E-value=1.1e+02 Score=19.42 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=25.7
Q ss_pred cccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhC
Q 037064 65 ISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRG 114 (187)
Q Consensus 65 ~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g 114 (187)
.++.+.|..-+.=...+.++++.--+ +.+..-+..+.. +++++.+
T Consensus 22 ~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~~~---~~~~~~~ 66 (104)
T 2e0q_A 22 DFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDENP---DIAARYG 66 (104)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCH---HHHHHTT
T ss_pred EEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCCCH---HHHHhCC
Confidence 35678888887777778888743223 333333333333 4565655
No 203
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=30.09 E-value=64 Score=25.36 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=31.4
Q ss_pred cCCCEEEEEc-CCCChhhHHHHHHHHH--hCCCeEEeCCCCC
Q 037064 87 EKIDLILVVG-GWNSSNTSSLQVIAED--RGIPSYWIDSEKR 125 (187)
Q Consensus 87 ~~~D~miVVG-G~nSSNT~rL~eia~~--~g~~t~~Ie~~~e 125 (187)
.+-|++|++. +-++.++..+++.|++ +|.++..|.+..+
T Consensus 105 ~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 105 QENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 3678988884 3467888999999999 9999999987543
No 204
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=29.63 E-value=43 Score=27.76 Aligned_cols=19 Identities=37% Similarity=0.650 Sum_probs=13.8
Q ss_pred HHHhhhcCCCEEEEEcCCCC
Q 037064 81 VYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 81 v~~La~~~~D~miVVGG~nS 100 (187)
+++++ ...|++||+||--.
T Consensus 57 ~~~~~-~~~d~vv~~GGDGT 75 (304)
T 3s40_A 57 CQEFA-SKVDLIIVFGGDGT 75 (304)
T ss_dssp HHHHT-TTCSEEEEEECHHH
T ss_pred HHHhh-cCCCEEEEEccchH
Confidence 34455 47999999999544
No 205
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=29.45 E-value=26 Score=26.26 Aligned_cols=70 Identities=14% Similarity=0.001 Sum_probs=39.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEE
Q 037064 16 KGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVV 95 (187)
Q Consensus 16 ~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVV 95 (187)
..|+|......+-+..-.++...-+-.++..+.+.+|.. ++.+. +....+.+..|..+++|+.|+.
T Consensus 10 ~~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i--------~l~~~------~~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 10 VEFDPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNV--------SFNFL------PLQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp ----CCSCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTC--------EEEEE------ECCGGGHHHHHHTSCCSEEEEC
T ss_pred CCcCcccCCceEEEEechHHHHHHHHHHHHHHHHHCCCC--------EEEEE------ECCcccHHHHHHcCCCCEEEec
Confidence 457887666778888877777766667766666543332 12211 1122344555666789999987
Q ss_pred cCCC
Q 037064 96 GGWN 99 (187)
Q Consensus 96 GG~n 99 (187)
+...
T Consensus 76 ~~~~ 79 (241)
T 3oxn_A 76 PTGP 79 (241)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 206
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=29.18 E-value=86 Score=26.99 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=38.0
Q ss_pred ccccchhcHH-H-HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 64 FISFNTICHA-A-QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 64 ~~~~nTIC~A-T-~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+.+|+.+|.. + ..=++++..+.+..+|++|-|||=..-.+.|.+.. ..++|-+.|-+-
T Consensus 63 ~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~--~~~~p~i~IPTT 122 (358)
T 3jzd_A 63 AGVYAGAVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIAL--ETGMPIVAIPTT 122 (358)
T ss_dssp EEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH--HHCCCEEEEECS
T ss_pred EEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCC
Confidence 4556666631 1 11223444443457999999999988888887655 467787777665
No 207
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=29.15 E-value=95 Score=23.49 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHhhhcCCCEEEEEcC-CCChh-hHHHHHHHHHhCCCeEE
Q 037064 78 QDAVYKLVEEKIDLILVVGG-WNSSN-TSSLQVIAEDRGIPSYW 119 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG-~nSSN-T~rL~eia~~~g~~t~~ 119 (187)
+.++..|. ..---+|++|| -.+++ ...|.+++++.|.|.+.
T Consensus 25 ~~aa~~L~-~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 25 EMAAKIIS-KAKRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp HHHHHHHH-HCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHH-cCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 45565665 34567788876 34445 56799999999999764
No 208
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=29.09 E-value=1.5e+02 Score=20.96 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=54.1
Q ss_pred cccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCe--EEeCCCCCCCCCCcchhhhhchhhh
Q 037064 65 ISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPS--YWIDSEKRIGPGNKMAYKLMHGELV 142 (187)
Q Consensus 65 ~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t--~~Ie~~~eL~~~~~~~~~~~~~~~~ 142 (187)
.++.+.|..-..=...+.+|.+..+.++.|--+. +...+.+..++.+.+- +..+...++.. . .... .
T Consensus 57 ~F~a~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~-~~v~-~ 125 (168)
T 2b1k_A 57 NVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD---DRQKAISWLKELGNPYALSLFDGDGMLGL------D-LGVY-G 125 (168)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESC---CHHHHHHHHHHHCCCCSEEEEETTCHHHH------H-HTCC-S
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC---ChHHHHHHHHHcCCCCceeeECcchHHHH------H-cCcc-c
Confidence 3568899987776777888875445555554332 2345566666666442 12222222110 0 0000 0
Q ss_pred hh-hccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhc
Q 037064 143 EK-ENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 143 ~~-~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~ 178 (187)
.. --.+..+-..+....|..+++.+.+.+-..|.++
T Consensus 126 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 162 (168)
T 2b1k_A 126 APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKY 162 (168)
T ss_dssp SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHH
T ss_pred cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 00 0112223455677788888887777666665544
No 209
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=29.02 E-value=86 Score=28.17 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCEEEEEcCCCCh-hhHHHHHHHHHhCCCeEEeC-CCCCCCCCCcchhhhhchhhhhhhccccCCCcEEE
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSS-NTSSLQVIAEDRGIPSYWID-SEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIG 156 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSS-NT~rL~eia~~~g~~t~~Ie-~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IG 156 (187)
.++.++. .++|++|+||.+-++ ++.....-.... +.+||+ ++.+++. .....++
T Consensus 270 ~~~~~~~-~~aDlvl~iG~~~~~~~~~~~~~~~~~~--~~i~id~d~~~~~~---------------------~~~~~~~ 325 (556)
T 3hww_A 270 AKATSEL-QQAQIVVQLGSSLTGKRLLQWQASCEPE--EYWIVDDIEGRLDP---------------------AHHRGRR 325 (556)
T ss_dssp HHHHHHH-TTCSEEEEESBCCCCHHHHHHHHHCCCS--EEEEEESSCSCCCT---------------------TCCSEEE
T ss_pred chhhhcc-cCCCEEEEcCCCcccHHHHHHHhcCCCC--eEEEECCCCccCCC---------------------CCCceEE
Q ss_pred Eee
Q 037064 157 VTA 159 (187)
Q Consensus 157 ITA 159 (187)
|.+
T Consensus 326 i~~ 328 (556)
T 3hww_A 326 LIA 328 (556)
T ss_dssp EES
T ss_pred EEc
No 210
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=28.95 E-value=1.9e+02 Score=21.90 Aligned_cols=136 Identities=10% Similarity=-0.002 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHH-HHHHhhhcCCCEEEEEcCCCChhh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQD-AVYKLVEEKIDLILVVGGWNSSNT 103 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-av~~La~~~~D~miVVGG~nSSNT 103 (187)
..||++... +.-.-|.++...+++...+ .| -++.++++ ....++|. .++.+....+|.+|+.+....+ .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 72 (255)
T 1byk_A 3 KVVAIIVTR-LDSLSENLAVQTMLPAFYE-QG-----YDPIMMES--QFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT-E 72 (255)
T ss_dssp CEEEEEESC-TTCHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHTTTCCEEEEECCTTCC-T
T ss_pred CEEEEEeCC-CCCccHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCcHHHHHHHHHHHHhcCCCEEEEecCcccc-H
Confidence 467887754 3445567777777654332 22 12222221 12234443 4555655689999999853322 1
Q ss_pred HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCC--CCc--HHHHHHHHHHHHh
Q 037064 104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGA--STP--DKAIEGVLKKVFE 177 (187)
Q Consensus 104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGA--STP--~~lI~eVi~~l~~ 177 (187)
.. .++.+.|...++... +....+..-... +....+ ..+..|.++||+.+|. ..+ ..-.+...+.|.+
T Consensus 73 ~~----l~~~~~pvV~~~~~~--~~~~~V~~d~~~~~~~a~~-~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~ 144 (255)
T 1byk_A 73 EM----LAHWQSSLVLLARDA--KGFASVCYDDEGAIKILMQ-RLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKA 144 (255)
T ss_dssp TT----SGGGSSSEEEESSCC--SSCEEEEECHHHHHHHHHH-HHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHH
T ss_pred HH----HHhcCCCEEEEcccc--CCCCEEEEccHHHHHHHHH-HHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHH
Confidence 22 235678988887642 211111111111 122211 1122478899999875 222 3334445555544
No 211
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=28.65 E-value=58 Score=25.91 Aligned_cols=14 Identities=29% Similarity=0.703 Sum_probs=12.6
Q ss_pred CCCEEEEEcCCCCh
Q 037064 88 KIDLILVVGGWNSS 101 (187)
Q Consensus 88 ~~D~miVVGG~nSS 101 (187)
.+|++|+-||+.|.
T Consensus 45 ~~d~lii~GGp~~~ 58 (236)
T 3l7n_A 45 DFDMLILMGGPQSP 58 (236)
T ss_dssp GCSEEEECCCSSCT
T ss_pred ccCEEEECCCCCCc
Confidence 59999999999993
No 212
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=28.63 E-value=2.2e+02 Score=22.64 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc--chhcHHHHHHH-HHHHHhhhcCCCEEEEEcCCCCh
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISF--NTICHAAQERQ-DAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~--nTIC~AT~~RQ-~av~~La~~~~D~miVVGG~nSS 101 (187)
..||++....+.-.-|..+...+++...+ .| -++.++ ++-.....++| +.+..|....+|.+|+ .+. +.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~-~~ 115 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYK-LN-----INYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLD-TT 115 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHH-TT-----CCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCS-SS
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHH-cC-----CeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCC-hH
Confidence 36888876523334566777777653322 22 112221 11000123344 4456666568999999 432 22
Q ss_pred hhHHHHHHHHHhCCCeEEe-CC
Q 037064 102 NTSSLQVIAEDRGIPSYWI-DS 122 (187)
Q Consensus 102 NT~rL~eia~~~g~~t~~I-e~ 122 (187)
....+++.+.+.|.|...+ +.
T Consensus 116 ~~~~~~~~~~~~~ip~V~~~~~ 137 (342)
T 1jx6_A 116 RHRKFVEHVLDSTNTKLILQNI 137 (342)
T ss_dssp TTHHHHHHHHHHCSCEEEEETC
T ss_pred hHHHHHHHHHHcCCCEEEEecC
Confidence 2334455566778887666 55
No 213
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=28.39 E-value=1.2e+02 Score=24.17 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhcCCCEEEEEcC---CCC--hhhHHHHHHHHHhCCCeE
Q 037064 76 ERQDAVYKLVEEKIDLILVVGG---WNS--SNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG---~nS--SNT~rL~eia~~~g~~t~ 118 (187)
-||.-+..++.+++|+||..=+ +.+ .....|...|-.+++|.+
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVA 133 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEE
Confidence 5888888999899999999865 343 688999999999998854
No 214
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=28.31 E-value=21 Score=28.21 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=40.4
Q ss_pred hhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccC-CCcEEEEeeCCC
Q 037064 84 LVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPK-GQITIGVTAGAS 162 (187)
Q Consensus 84 La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~-~~~~IGITAGAS 162 (187)
|+ ...|++||+.|. |.--.-+.+ +...+.|.+.+.. .++. ..+++. ....| -=++
T Consensus 104 m~-~~sda~IvlpGg-~GTL~E~~~-al~~~kpV~~l~~-~~~~-----------------~gfi~~~~~~~i---~~~~ 159 (176)
T 2iz6_A 104 NA-LSSNVLVAVGMG-PGTAAEVAL-ALKAKKPVVLLGT-QPEA-----------------EKFFTSLDAGLV---HVAA 159 (176)
T ss_dssp CG-GGCSEEEEESCC-HHHHHHHHH-HHHTTCCEEEESC-CHHH-----------------HHHHHHHCTTTE---EEES
T ss_pred HH-HhCCEEEEecCC-ccHHHHHHH-HHHhCCcEEEEcC-cccc-----------------cccCChhhcCeE---EEcC
Confidence 45 478999999994 322223333 3357889999987 2211 111100 01112 2267
Q ss_pred CcHHHHHHHHHHHHh
Q 037064 163 TPDKAIEGVLKKVFE 177 (187)
Q Consensus 163 TP~~lI~eVi~~l~~ 177 (187)
+|+.+++.+.+++..
T Consensus 160 ~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 160 DVAGAIAAVKQLLAK 174 (176)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHh
Confidence 899999988887754
No 215
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=28.08 E-value=69 Score=27.27 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=24.2
Q ss_pred hccccCCCcEEEEeeCCCCcHHHHHHHHHHHH---hccHhhh
Q 037064 145 ENWLPKGQITIGVTAGASTPDKAIEGVLKKVF---EIKREEA 183 (187)
Q Consensus 145 ~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~---~~~~~~~ 183 (187)
..|+-.......+..|+|+|+.+-+.+- .+. .|..+++
T Consensus 308 L~w~l~~~~v~~vI~g~~~~~~l~en~~-a~~~~~~Ls~e~~ 348 (367)
T 3lut_A 308 IAWCLRNEGVSSVLLGASNAEQLMENIG-AIQVLPKLSSSIV 348 (367)
T ss_dssp HHHHHTSTTEEEEEECCSSHHHHHHHHT-HHHHGGGCCHHHH
T ss_pred HHHHHhCCCCcEEecCCCCHHHHHHHHH-hhcccCCCCHHHH
Confidence 4787434455578899999998766653 332 4555443
No 216
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=28.03 E-value=53 Score=26.80 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=53.7
Q ss_pred HHHHHhhhcCCCEEEEEc--CCCC--hhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcE
Q 037064 79 DAVYKLVEEKIDLILVVG--GWNS--SNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQIT 154 (187)
Q Consensus 79 ~av~~La~~~~D~miVVG--G~nS--SNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 154 (187)
+.+.+++ ...|++||=| |..+ ....-.+++++..+.|+.+|-+.+-= .+.|-...-+.. ...+..
T Consensus 123 ~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg----~i~~~~lt~~~l-----~~~g~~- 191 (242)
T 3qxc_A 123 QRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLG----LINDCLLNDFLL-----KSHQLD- 191 (242)
T ss_dssp HHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTT----HHHHHHHHHHHH-----HTSSSC-
T ss_pred HHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCc----HHHHHHHHHHHH-----HhCCCC-
Confidence 3455677 5899999966 4433 12234578999999999999988642 344443322221 113667
Q ss_pred EEEeeCCCCcH-HHHHHHHHHHHhc
Q 037064 155 IGVTAGASTPD-KAIEGVLKKVFEI 178 (187)
Q Consensus 155 IGITAGASTP~-~lI~eVi~~l~~~ 178 (187)
.||..---.|+ .+-+.+.-+|++.
T Consensus 192 ~GvIlN~v~~~~~~~~~~~p~le~~ 216 (242)
T 3qxc_A 192 YKIAINLKGNNTAFHSISLPYIELF 216 (242)
T ss_dssp EEEEECCCTTCCHHHHHTHHHHHHH
T ss_pred EEEEEeCCCCccchhhhhHHHHHHh
Confidence 88877554444 4555556666543
No 217
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=27.87 E-value=81 Score=23.33 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=30.5
Q ss_pred CCCEEEEEc-CCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 88 KIDLILVVG-GWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 88 ~~D~miVVG-G~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
+-|++|++. +.+|.++..+++.|+++|.++..|.+..
T Consensus 82 ~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp TTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 568887776 4567889999999999999999998753
No 218
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=27.65 E-value=24 Score=26.51 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=33.9
Q ss_pred CCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcC
Q 037064 18 FDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGG 97 (187)
Q Consensus 18 ~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG 97 (187)
|||......+.+..-.+....-.-.++..+++ .++ .-++.+. .. +.++....|..+++|+.|+.+.
T Consensus 1 fdp~~~~g~l~Ig~~~~~~~~~lp~~l~~f~~----~~P----~v~l~l~----~~--~~~~l~~~L~~g~iDl~i~~~~ 66 (218)
T 2y7p_A 1 MDPFASTRTFNLAMTDIGEMYFMPPLMEALAQ----RAP----HIQISTL----RP--NAGNLKEDMESGAVDLALGLLP 66 (218)
T ss_dssp CCTTTCCCEEEEECCHHHHHHHHHHHHHHHHH----HCT----TCEEEEE----CC--CTTTHHHHHHHTSSCEEEECCT
T ss_pred CCccccceEEEEEecHHHHHHHHHHHHHHHHH----HCC----CCEEEEE----eC--CcccHHHHHhCCCceEEEecCC
Confidence 78886666666654444444444455444444 442 1122221 11 1223344556688999887543
No 219
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=27.61 E-value=57 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=28.6
Q ss_pred EEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 92 ILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 92 miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
++|+|+.....++.|++-+++.|..++.++..+
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~~ 34 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPA 34 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEEEEehhh
Confidence 678898888899999999999999999887543
No 220
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=27.24 E-value=95 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=18.8
Q ss_pred cccchhcHHHHHHHHHHHHhhhcCCC
Q 037064 65 ISFNTICHAAQERQDAVYKLVEEKID 90 (187)
Q Consensus 65 ~~~nTIC~AT~~RQ~av~~La~~~~D 90 (187)
.++.+.|..-+.=...+.++++.--+
T Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~ 51 (105)
T 3m9j_A 26 DFSATWCGPCKMIKPFFHSLSEKYSN 51 (105)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHSTT
T ss_pred EEECCCChhhHHHHHHHHHHHHHccC
Confidence 36788898887777888888754334
No 221
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=27.23 E-value=1.4e+02 Score=19.68 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=17.3
Q ss_pred cccchhcHHHHHHHHHHHHhhhc
Q 037064 65 ISFNTICHAAQERQDAVYKLVEE 87 (187)
Q Consensus 65 ~~~nTIC~AT~~RQ~av~~La~~ 87 (187)
.++.+.|..-+.=...+.++++.
T Consensus 30 ~f~a~wC~~C~~~~~~l~~~~~~ 52 (111)
T 2pu9_C 30 DMFTQWCGPSKAMAPKYEKLAEE 52 (111)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEECCcCHhHHHHCHHHHHHHHH
Confidence 36788999887777778888753
No 222
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=27.22 E-value=50 Score=29.26 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 76 ERQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
+=.+.+++++ ..||.++|+ ||.-|.=+..|++++++.|..+|-|
T Consensus 84 e~~d~Ir~~l-e~~d~~fi~as~GGGTGSG~ap~laela~e~g~ltvsV 131 (382)
T 1rq2_A 84 DAKDEIEELL-RGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGV 131 (382)
T ss_dssp HTHHHHHHHH-TTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHH-hhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEE
Confidence 3356788888 589999888 5566777888999999999776643
No 223
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=27.22 E-value=63 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=26.1
Q ss_pred EEEEcCCCCh-------hhHHHHHHHHHhCCCeEEeCCC
Q 037064 92 ILVVGGWNSS-------NTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 92 miVVGG~nSS-------NT~rL~eia~~~g~~t~~Ie~~ 123 (187)
++|+||-.|+ -++.|++-+++.|..++.++..
T Consensus 5 i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp EEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 6677777765 5788999999999999998865
No 224
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=27.12 E-value=25 Score=27.38 Aligned_cols=11 Identities=55% Similarity=0.879 Sum_probs=9.5
Q ss_pred CEEEEEcCCCC
Q 037064 90 DLILVVGGWNS 100 (187)
Q Consensus 90 D~miVVGG~nS 100 (187)
|-++|+|+++|
T Consensus 1 ~KvMvlGkk~~ 11 (137)
T 1t7s_A 1 DKIIVMGGKNA 11 (137)
T ss_dssp CCCEEECSSSE
T ss_pred CceeeeCCCCC
Confidence 45789999999
No 225
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=27.11 E-value=30 Score=26.09 Aligned_cols=112 Identities=4% Similarity=-0.056 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHHHhhhcccccccccccccchhcH----HHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHH
Q 037064 36 IKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICH----AAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAE 111 (187)
Q Consensus 36 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~----AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~ 111 (187)
..+..+..++.++..++.+ .-+.+|. |. .+......+.+.+ ..+|.+|++|.. ... ..+.++++
T Consensus 46 nP~si~a~l~al~~~~~~~-------riivvf~--~g~~s~r~k~~~~~~~~~~-~~aD~vi~~~~~-~~~-~~~~~~~~ 113 (163)
T 3mvn_A 46 HPTAITATIDALRAKVGQQ-------RILAVLE--PRSNTMKMGVHKHELATSL-QDADSVFIYQPP-TIE-WQVSEVLA 113 (163)
T ss_dssp SHHHHHHHHHHHHHHHTTS-------CEEEEEC--CC---------CHHHHHHH-TTCSEEEEECC------CCHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCC-------cEEEEEC--CCCcchhhHHHHHHHHHHH-hcCCEEEEECCC-Ccc-cCHHHHHh
Confidence 5667777777777644321 0112221 21 2233335555555 469999999843 111 23677776
Q ss_pred HhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHH
Q 037064 112 DRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKV 175 (187)
Q Consensus 112 ~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l 175 (187)
..+.+.+++++.+++-. .-..+. ...-+=++.|+=--+.+.+++++.|
T Consensus 114 ~~~~~~~~~~d~~eai~--------------~~~~~~--~~gDvVLv~Gsg~~~~~~~~l~~~l 161 (163)
T 3mvn_A 114 NLAQPAISADDVDELVM--------------RIVQQA--KPNDHILIMSNGAFGGIHQKLLTAL 161 (163)
T ss_dssp TCCSCEEEESSHHHHHH--------------HHHHHC--CTTCEEEEECSSCGGGHHHHHHHHT
T ss_pred hCCCCeEEECCHHHHHH--------------HHHHhC--CCCCEEEEECCCCHHHHHHHHHHHH
Confidence 66667777777666521 011333 2333445555544555666666544
No 226
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.80 E-value=44 Score=25.02 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=16.7
Q ss_pred EEEEEcCCCC--hhhHHHHHHHH
Q 037064 91 LILVVGGWNS--SNTSSLQVIAE 111 (187)
Q Consensus 91 ~miVVGG~nS--SNT~rL~eia~ 111 (187)
+++|.|+++. |||.+|++...
T Consensus 4 ilii~~S~~~~~s~t~~la~~~~ 26 (201)
T 1t5b_A 4 VLVLKSSILAGYSQSGQLTDYFI 26 (201)
T ss_dssp EEEEECCSSGGGCHHHHHHHHHH
T ss_pred EEEEEeCCCCCCChHHHHHHHHH
Confidence 6788899884 99999988543
No 227
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=26.27 E-value=46 Score=25.49 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=20.4
Q ss_pred hhcHHHHHH-HHHHHHhhhc--CCCEEEEEcCCCCh
Q 037064 69 TICHAAQER-QDAVYKLVEE--KIDLILVVGGWNSS 101 (187)
Q Consensus 69 TIC~AT~~R-Q~av~~La~~--~~D~miVVGG~nSS 101 (187)
.||.-..+. ++++++++ . .+|++|+-||---.
T Consensus 51 ~iv~Dd~~~i~~~l~~~~-~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 51 EIVKDDKESIQQAVLAGY-HKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp EEECSSHHHHHHHHHHHH-TCTTCSEEEEECCCSSS
T ss_pred EEeCCCHHHHHHHHHHHH-hcCCCCEEEEcCCCCCC
Confidence 344443333 34666666 4 79999999996544
No 228
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=26.15 E-value=2.1e+02 Score=25.27 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=37.2
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWID 121 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie 121 (187)
.-||+.+..--+++++......+-++|+||- |++.-+.++-.. .|.|.+..+
T Consensus 384 Egia~~~~~~~~~l~~~~g~~~~~i~~~GG~--aks~~~~Qi~Adv~g~pV~~~~ 436 (501)
T 3g25_A 384 ESLCYQTRDVMEAMSKDSGIDVQSLRVDGGA--VKNNFIMQFQADIVNTSVERPE 436 (501)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSEEEEESGG--GGCHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEecch--hcCHHHHHHHHHHhCCceEecC
Confidence 4588888888888887543468999999994 456666666555 577765544
No 229
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=25.69 E-value=22 Score=27.78 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=40.9
Q ss_pred CCChhhHHHHHHHHHhCCCeEEeCC-CCCCCCCCcchhhhhchhhhhhhccccC-CCcEEEEeeCCC-CcHHHHHHHHHH
Q 037064 98 WNSSNTSSLQVIAEDRGIPSYWIDS-EKRIGPGNKMAYKLMHGELVEKENWLPK-GQITIGVTAGAS-TPDKAIEGVLKK 174 (187)
Q Consensus 98 ~nSSNT~rL~eia~~~g~~t~~Ie~-~~eL~~~~~~~~~~~~~~~~~~~~wl~~-~~~~IGITAGAS-TP~~lI~eVi~~ 174 (187)
..-+|+.-|.+..++.|.......- ++|.+. |+ ..-..|+.. ++..|=+|+|+| +|++++.+++..
T Consensus 37 i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~---I~--------~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~ 105 (178)
T 2pjk_A 37 IVDESGDIIKQLLIENGHKIIGYSLVPDDKIK---IL--------KAFTDALSIDEVDVIISTGGTGYSPTDITVETIRK 105 (178)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEECSCHHH---HH--------HHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGG
T ss_pred EeehHHHHHHHHHHHCCCEEEEEEEeCCCHHH---HH--------HHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHH
Confidence 3468999999999999975433221 122110 00 122356632 267777777766 678888888876
Q ss_pred H
Q 037064 175 V 175 (187)
Q Consensus 175 l 175 (187)
+
T Consensus 106 ~ 106 (178)
T 2pjk_A 106 L 106 (178)
T ss_dssp G
T ss_pred H
Confidence 6
No 230
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=25.53 E-value=1.2e+02 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CEEEEEcCCCChhhHHHHHHHHHhCCC
Q 037064 90 DLILVVGGWNSSNTSSLQVIAEDRGIP 116 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~~g~~ 116 (187)
|+-+||-|....+...|.+.+++.|..
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~ 251 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFK 251 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCc
Confidence 444333344444455788888777753
No 231
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=25.13 E-value=51 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=20.2
Q ss_pred hhcHHHHHH-HHHHHHhhhcCCCEEEEEcCCCCh
Q 037064 69 TICHAAQER-QDAVYKLVEEKIDLILVVGGWNSS 101 (187)
Q Consensus 69 TIC~AT~~R-Q~av~~La~~~~D~miVVGG~nSS 101 (187)
.|+.-..++ +++++++++..+|++|+-||---+
T Consensus 49 ~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 49 VVVPEGYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 344443333 346666663249999999996544
No 232
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=24.86 E-value=2.6e+02 Score=24.82 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=37.5
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWID 121 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie 121 (187)
..||+.+..--+++++.....++-++|+||- |++.-+.++-.. .|.|.+..+
T Consensus 381 Egia~~~r~~~~~l~~~~g~~~~~i~~~GGg--a~s~~~~Qi~ADv~g~pV~~~~ 433 (510)
T 2p3r_A 381 ESIAYQTRDVLEAMQADSGIRLHALRVDGGA--VANNFLMQFQSDILGTRVERPE 433 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSEEEEESGG--GGCHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEeCch--hcCHHHHHHHHHHhCCceEecC
Confidence 4588888888888887743468999999994 466667776555 567766544
No 233
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.81 E-value=63 Score=23.96 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=29.0
Q ss_pred HHHHHHhhhcCCC-EEEEEcCCCChhhHH-HHHHHHHhCCCeEEeCCCC
Q 037064 78 QDAVYKLVEEKID-LILVVGGWNSSNTSS-LQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 78 Q~av~~La~~~~D-~miVVGG~nSSNT~r-L~eia~~~g~~t~~Ie~~~ 124 (187)
.+++..|. +.+ -++++|--.|.+... +.......|.+++.+.+.+
T Consensus 39 ~~~~~~i~--~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~ 85 (183)
T 2xhz_A 39 TLACEKMF--WCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGE 85 (183)
T ss_dssp HHHHHHHH--TCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTH
T ss_pred HHHHHHHH--hCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchH
Confidence 44555665 466 899999877776553 3333345688888886443
No 234
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=24.58 E-value=62 Score=27.71 Aligned_cols=43 Identities=16% Similarity=0.421 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 77 RQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
=.+.+++++ +.+|.++|. ||.-|.=+.-|++++++.+..+|-|
T Consensus 85 ~~d~I~~~l-e~~d~~~i~as~GGGTGSG~~~~la~~a~e~g~lt~~v 131 (320)
T 1ofu_A 85 DRERISEVL-EGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAV 131 (320)
T ss_dssp THHHHHHHH-TTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHH-hhCCEEEEEeecCCCccccHHHHHHHHHHhcCCcEEEE
Confidence 356778888 589998887 4456777778999999998777644
No 235
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.50 E-value=34 Score=23.51 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=15.3
Q ss_pred EeeCCCCcHHHHHHHHHHHHh
Q 037064 157 VTAGASTPDKAIEGVLKKVFE 177 (187)
Q Consensus 157 ITAGASTP~~lI~eVi~~l~~ 177 (187)
.-.|.-+++.+++.+.+.|..
T Consensus 105 ~~~G~~~~~~l~~~l~~~l~~ 125 (130)
T 2dml_A 105 DYQGGRTGEAIVDAALSALRS 125 (130)
T ss_dssp ECCSCCSHHHHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHhc
Confidence 345778888888888777754
No 236
>3nek_A Nitrogen repressor-like protein MJ0159; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Methanocaldococcus jannaschii}
Probab=24.32 E-value=58 Score=27.27 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=52.9
Q ss_pred ccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhccccc-----ccccccccchhcHHHHHHHHHHHHhhhc
Q 037064 13 SVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVEN-----VNEHFISFNTICHAAQERQDAVYKLVEE 87 (187)
Q Consensus 13 ~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~~~~~nTIC~AT~~RQ~av~~La~~ 87 (187)
.+.-.|||... +.-.++|-++...+++++.++.+++.+..-+..-+ ...+..-..|+|+-|-+ .+ |.+.
T Consensus 29 ~~~~~fD~~~~-~G~VivN~s~i~k~~l~~al~i~~~v~~~g~~is~~v~i~~~~~~igI~TvCSiTiD---Gv--Llk~ 102 (238)
T 3nek_A 29 MAKVTYDIDEA-DGDVIVNTAFIDKKYLDEAFDILKEAYKKGLGISDRFGIVEENDRIKIQTICAVTLD---GI--FLRN 102 (238)
T ss_dssp HTTCCCBTTTT-BCEEEEEEEEEEGGGHHHHHHHHHHHHHTTCSSSSEEEEEECSSEEEEEEECTHHHH---HH--HHHT
T ss_pred HhhCcCCCcCC-cccEEEEEEEecHHHHHHHHHHHHHHHHcCCcccCceEEecCCCeEEEEEeeeeEEh---hh--HHhC
Confidence 45678999844 44458999999999999999999997766543110 00123356899999986 33 3334
Q ss_pred CCCEEEEEcC
Q 037064 88 KIDLILVVGG 97 (187)
Q Consensus 88 ~~D~miVVGG 97 (187)
.+-..-.-||
T Consensus 103 GIpv~p~yGG 112 (238)
T 3nek_A 103 SVPLIPKYGG 112 (238)
T ss_dssp TCCEEEEEEE
T ss_pred CCCccCccce
Confidence 5666655565
No 237
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=23.98 E-value=1.1e+02 Score=23.89 Aligned_cols=36 Identities=6% Similarity=0.141 Sum_probs=18.5
Q ss_pred cCCCEEEEEcCCCChhh----------HHHHHHHHHhCCCeEEeCC
Q 037064 87 EKIDLILVVGGWNSSNT----------SSLQVIAEDRGIPSYWIDS 122 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT----------~rL~eia~~~g~~t~~Ie~ 122 (187)
..+|++|+.|+--.... .++.++.++.+.|.|.|-.
T Consensus 50 ~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~G 95 (322)
T 2nxf_A 50 ERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWG 95 (322)
T ss_dssp TTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 35777777777433322 1233344344556666643
No 238
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.93 E-value=2.3e+02 Score=21.24 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCC-CEEEEEcCCCChhhHHHHH-HHHHhCCCeEEeCCCCC
Q 037064 78 QDAVYKLVEEKI-DLILVVGGWNSSNTSSLQV-IAEDRGIPSYWIDSEKR 125 (187)
Q Consensus 78 Q~av~~La~~~~-D~miVVGG~nSSNT~rL~e-ia~~~g~~t~~Ie~~~e 125 (187)
++++..|. +. +-++|+|--.|...-.-+. .-.+.|.+++.+.+.+.
T Consensus 35 ~~~~~~i~--~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~ 82 (201)
T 3fxa_A 35 VKTVEKIA--ECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDA 82 (201)
T ss_dssp HHHHHHHH--HCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHH
T ss_pred HHHHHHHH--hcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHH
Confidence 45565665 46 5999999887776554332 23456889998876543
No 239
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=23.88 E-value=93 Score=29.61 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=27.3
Q ss_pred HHHHhhhcCCCEEEEEcCCCCh--------------------hhHHHHHHHHHhCCCeEEe
Q 037064 80 AVYKLVEEKIDLILVVGGWNSS--------------------NTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSS--------------------NT~rL~eia~~~g~~t~~I 120 (187)
++.++| +..|++||+.|..|+ |-..|.+-..+.|+|+..|
T Consensus 420 ~a~~~A-~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~~~~~VVV 479 (713)
T 3zyz_A 420 SGASAA-RGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVV 479 (713)
T ss_dssp HHHHHH-TTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHh-hcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHHHHhCCCeEEE
Confidence 445677 589999998876653 3456776666777775544
No 240
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.75 E-value=57 Score=25.05 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=21.3
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED 112 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~ 112 (187)
++++++.+...+|++|+-||-.-.---...+..++
T Consensus 56 ~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~ 90 (164)
T 3pzy_A 56 GEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVA 90 (164)
T ss_dssp HHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHH
Confidence 34566655236999999999655543334444433
No 241
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=23.61 E-value=3.3e+02 Score=23.96 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=37.4
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDS 122 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~ 122 (187)
.-||+.+..--+++++......+-++|+||- |++.-+.++-.. .|.|.+..+.
T Consensus 383 Egia~~~~~~~~~l~~~~g~~~~~i~~~GG~--a~s~~~~Qi~Adv~g~pV~~~~~ 436 (504)
T 2d4w_A 383 EATAFQSREVVDAMNADSGVDLTELRVDGGM--VANELLMQFQADQLGVDVVRPKV 436 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCEEEEESGG--GGCHHHHHHHHHHHTSCEEEESC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeCCc--ccCHHHHHHHHHHhCCeEEeCCC
Confidence 4488888888888877543467899999986 355666666655 4777765544
No 242
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.29 E-value=1.6e+02 Score=22.93 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=31.4
Q ss_pred HHHHHHhhhc----CCCEEEEEcCCCChhhHH-HHHHHHHhCCCeEEeCCCCCC
Q 037064 78 QDAVYKLVEE----KIDLILVVGGWNSSNTSS-LQVIAEDRGIPSYWIDSEKRI 126 (187)
Q Consensus 78 Q~av~~La~~----~~D~miVVGG~nSSNT~r-L~eia~~~g~~t~~Ie~~~eL 126 (187)
++++..|. + ..+-++|+|--.|...-. ++..-.+.|.+++.+.+.+.+
T Consensus 45 ~~~~~~i~-~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~ 97 (220)
T 3etn_A 45 EKAVELIV-EQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQ 97 (220)
T ss_dssp HHHHHHHH-HHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGG
T ss_pred HHHHHHHH-hHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHH
Confidence 34555555 2 278999999877766543 343445678899988766543
No 243
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=23.21 E-value=44 Score=32.46 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHH
Q 037064 75 QERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQ 107 (187)
Q Consensus 75 ~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~ 107 (187)
..|++++..|.+..+|.+|||||-.|-.+..++
T Consensus 96 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l 128 (762)
T 3o8l_A 96 EGRLRAAHNLVKRGITNLCVIGGDGSLTGADTF 128 (762)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHH
Confidence 468889888887899999999999887776643
No 244
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=23.08 E-value=62 Score=20.96 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=17.2
Q ss_pred cccchhcHHHHHHHHHHHHhhh
Q 037064 65 ISFNTICHAAQERQDAVYKLVE 86 (187)
Q Consensus 65 ~~~nTIC~AT~~RQ~av~~La~ 86 (187)
.++.+.|..-..=...+.++++
T Consensus 27 ~f~~~~C~~C~~~~~~~~~~~~ 48 (109)
T 3tco_A 27 DCWAEWCAPCHLYEPIYKKVAE 48 (109)
T ss_dssp EEECTTCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHhhhHHHHHHHH
Confidence 3678899888887778888874
No 245
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=22.88 E-value=1.6e+02 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.1
Q ss_pred cCCCEEEEEcCCCC
Q 037064 87 EKIDLILVVGGWNS 100 (187)
Q Consensus 87 ~~~D~miVVGG~nS 100 (187)
.++|++|+.|+--.
T Consensus 31 ~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 31 KQPDILVVVGNILK 44 (260)
T ss_dssp HCCSEEEEESCCCC
T ss_pred cCCCEEEECCCCCC
Confidence 36999999999643
No 246
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=22.65 E-value=1.2e+02 Score=24.89 Aligned_cols=10 Identities=50% Similarity=0.983 Sum_probs=5.7
Q ss_pred CCCEEEEEcC
Q 037064 88 KIDLILVVGG 97 (187)
Q Consensus 88 ~~D~miVVGG 97 (187)
++|++|+.|+
T Consensus 61 ~~D~vliaGD 70 (336)
T 2q8u_A 61 EVDLILLTGD 70 (336)
T ss_dssp TCSEEEEESC
T ss_pred CCCEEEECCc
Confidence 4555555555
No 247
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=22.57 E-value=56 Score=25.28 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=20.5
Q ss_pred hcHHHHHH-HHHHHHhhhc-CCCEEEEEcCCCChh
Q 037064 70 ICHAAQER-QDAVYKLVEE-KIDLILVVGGWNSSN 102 (187)
Q Consensus 70 IC~AT~~R-Q~av~~La~~-~~D~miVVGG~nSSN 102 (187)
||.-..+. +++++++++. .+|++|+-||--=+-
T Consensus 48 iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 48 VIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp EECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 55444333 3466666631 699999999965443
No 248
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=22.47 E-value=1.5e+02 Score=23.51 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCChh------------hHHHHHHHHHhCCC-eEEeCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSSN------------TSSLQVIAEDRGIP-SYWIDSE 123 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSSN------------T~rL~eia~~~g~~-t~~Ie~~ 123 (187)
.+++.++. ..+|++|-..|..+.+ |..|++.|++.|++ -.++.+.
T Consensus 53 ~~~~~~~~-~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~ 110 (311)
T 3m2p_A 53 LEDLINQL-NDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTI 110 (311)
T ss_dssp HHHHHHHT-TTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred HHHHHHhh-cCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccH
Confidence 35677777 4899999999876543 68999999998876 5566653
No 249
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=22.46 E-value=1.1e+02 Score=27.59 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=38.9
Q ss_pred chhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCC
Q 037064 68 NTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDS 122 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~ 122 (187)
.-||+++..--+++++.- .+++-++|+||- |++.-+.++-.. .|.|.+..+.
T Consensus 423 Egia~~~r~~~e~l~~~g-~~~~~i~~~GG~--aks~~~~Qi~ADv~g~pV~~~~~ 475 (554)
T 3l0q_A 423 QALALGTRHIIETMNQNG-YNIDTMMASGGG--TKNPIFVQEHANATGCAMLLPEE 475 (554)
T ss_dssp HHHHHHHHHHHHHHHTTT-CCCCEEEEESGG--GGCHHHHHHHHHHHCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHcC-CCCCEEEEeCcc--ccCHHHHHHHHHhhCCeEEecCC
Confidence 458999998888888764 578999999995 456667776655 5777776554
No 250
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=22.29 E-value=1.6e+02 Score=25.87 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=10.3
Q ss_pred cCCCEEEEEcCC
Q 037064 87 EKIDLILVVGGW 98 (187)
Q Consensus 87 ~~~D~miVVGG~ 98 (187)
..+|++||+||-
T Consensus 113 ~~~DlVIvlGGD 124 (388)
T 3afo_A 113 NRTDLLVTLGGD 124 (388)
T ss_dssp HHCSEEEEEESH
T ss_pred cCCCEEEEEeCc
Confidence 369999999993
No 251
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.29 E-value=1e+02 Score=22.44 Aligned_cols=44 Identities=20% Similarity=0.439 Sum_probs=28.2
Q ss_pred HHHHHHHHhhh-cCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeC
Q 037064 76 ERQDAVYKLVE-EKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121 (187)
Q Consensus 76 ~RQ~av~~La~-~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie 121 (187)
+|.+....+.. ...-++|+.||..= ...+.++|++.|+|.+..+
T Consensus 61 ~r~~~~l~a~~~~~~~~iIlt~g~~~--~~~i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 61 DRSDLLLTALEMPNVRCLILTGNLEP--VQLVLTKAEERGVPVILTG 105 (139)
T ss_dssp TCHHHHHHHTTCTTEEEEEEETTCCC--CHHHHHHHHHHTCCEEECS
T ss_pred CHHHHHHHHHhCCCCcEEEEcCCCCC--CHHHHHHHHHCCCeEEEEC
Confidence 44444433332 35789999999763 2445578888998877544
No 252
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.29 E-value=1.4e+02 Score=22.59 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhcCCCEEEEEcC---CC--ChhhHHHHHHHHHhCCCeE
Q 037064 76 ERQDAVYKLVEEKIDLILVVGG---WN--SSNTSSLQVIAEDRGIPSY 118 (187)
Q Consensus 76 ~RQ~av~~La~~~~D~miVVGG---~n--SSNT~rL~eia~~~g~~t~ 118 (187)
-||.-+..+..+++|+||..=+ +. -.....|...|-.+++|.+
T Consensus 62 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 62 GDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLA 109 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEE
T ss_pred CcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeE
Confidence 5888888899899999999865 23 3688999999999998754
No 253
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.28 E-value=3.3e+02 Score=22.45 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCC-CChhh----HHHHH
Q 037064 34 TMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGW-NSSNT----SSLQV 108 (187)
Q Consensus 34 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~-nSSNT----~rL~e 108 (187)
||+.+|..++++...+....+. -.+.++-|+.|.+=-+-++...+-.+|+++|+--+ +-.+- .+..+
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grv--------pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ 127 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRV--------PVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKT 127 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSS--------CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCC--------cEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 4677777777766655322211 12334555555544444444333347888877653 22222 24445
Q ss_pred HHHHhCCCe
Q 037064 109 IAEDRGIPS 117 (187)
Q Consensus 109 ia~~~g~~t 117 (187)
||...+.|.
T Consensus 128 va~a~~lPi 136 (297)
T 3flu_A 128 IAEATSIPM 136 (297)
T ss_dssp HHHHCCSCE
T ss_pred HHHhCCCCE
Confidence 666656664
No 254
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=22.26 E-value=88 Score=26.04 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.3
Q ss_pred CCCEEEEEcCCC
Q 037064 88 KIDLILVVGGWN 99 (187)
Q Consensus 88 ~~D~miVVGG~n 99 (187)
++|++||.||..
T Consensus 36 ~~D~IVVLG~~~ 47 (266)
T 3ca8_A 36 QADCVILAGNAV 47 (266)
T ss_dssp CCSEEEEESCCC
T ss_pred CCCEEEECCCCc
Confidence 355555555544
No 255
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=22.12 E-value=1.5e+02 Score=22.87 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=28.9
Q ss_pred hccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCE
Q 037064 12 KSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDL 91 (187)
Q Consensus 12 ~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~ 91 (187)
+.+|.|..+..+.-+|+++. + ...+.++.+.|++ .| .++.+.+.. ..+. .+|+
T Consensus 8 ~~~~~~~~~~~~~~~I~ii~---~-~~~~~~~~~~l~~-----~g-----~~~~~~~~~-----------~~l~--~~d~ 60 (208)
T 2iss_D 8 HHHSSGLVPRGSHMKIGVLG---V-QGDVREHVEALHK-----LG-----VETLIVKLP-----------EQLD--MVDG 60 (208)
T ss_dssp ------------CCEEEEEC---S-SSCHHHHHHHHHH-----TT-----CEEEEECSG-----------GGGG--GCSE
T ss_pred ccccCCccCCCCCcEEEEEE---C-CCchHHHHHHHHH-----CC-----CEEEEeCCh-----------HHHh--hCCE
Confidence 45778888887767899993 2 2356666666654 12 123322211 1253 5999
Q ss_pred EEEEcCCCCh
Q 037064 92 ILVVGGWNSS 101 (187)
Q Consensus 92 miVVGG~nSS 101 (187)
+|+=||+.+.
T Consensus 61 iil~GG~~~~ 70 (208)
T 2iss_D 61 LILPGGESTT 70 (208)
T ss_dssp EEECSSCHHH
T ss_pred EEECCCcHHH
Confidence 9998885443
No 256
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.11 E-value=59 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=26.1
Q ss_pred hhcHHHHHH-HHHHHHhhhc-CCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 69 TICHAAQER-QDAVYKLVEE-KIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 69 TIC~AT~~R-Q~av~~La~~-~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
.+|.-..++ +++++++++. .+|++|+-||---.---...+..++.
T Consensus 41 ~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 41 ELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp EEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred EEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHH
Confidence 344443333 3466666532 69999999997655444444555444
No 257
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=22.09 E-value=2.1e+02 Score=24.91 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhh----cCCCEEEEEcCCCC
Q 037064 25 VKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVE----EKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~----~~~D~miVVGG~nS 100 (187)
+|+.+|+-.+... -.+.+.+.|+. . |.+ ...+.+.+.-|+.|-+.=..+.+.+. .++|++|-|||=..
T Consensus 44 ~rvlIVtd~~v~~-~~~~v~~~L~~----~-g~~--~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv 115 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-TAEEIRKRLAG----K-GVD--AHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAA 115 (368)
T ss_dssp SEEEEEECGGGHH-HHHHHHHHHHH----T-TCE--EEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHH
T ss_pred CEEEEEECccHHH-HHHHHHHHHHh----c-CCc--ceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHH
Confidence 6888888777543 25555555543 1 100 00122334455555443333333321 24799999999888
Q ss_pred hhhHHHHHHHHHhCCCeEEeCCC
Q 037064 101 SNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 101 SNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
-.+.+.+...-.+|+|-..|-+-
T Consensus 116 ~D~ak~~Aa~~~rgip~i~IPTT 138 (368)
T 3qbe_A 116 TDVAGFAAATWLRGVSIVHLPTT 138 (368)
T ss_dssp HHHHHHHHHHGGGCCEEEEEECS
T ss_pred HHHHHHHHHHhccCCcEEEECCC
Confidence 88888887766788888877664
No 258
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=21.96 E-value=1.3e+02 Score=25.32 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.0
Q ss_pred cCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 87 EKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 87 ~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
..+|.|+++|| ||....|.+..++.
T Consensus 350 ~~i~~VvLvGG--~s~~p~l~~~l~~~ 374 (404)
T 3i33_A 350 GQIQEIVLVGG--STRIPKIQKLLQDF 374 (404)
T ss_dssp GGCCEEEEESG--GGGCHHHHHHHHHH
T ss_pred hhCCEEEEECC--ccccHHHHHHHHHH
Confidence 46899999999 78888888888775
No 259
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=21.86 E-value=3e+02 Score=21.77 Aligned_cols=20 Identities=15% Similarity=-0.115 Sum_probs=12.9
Q ss_pred cEEEEeeCCCCcHHHHHHHH
Q 037064 153 ITIGVTAGASTPDKAIEGVL 172 (187)
Q Consensus 153 ~~IGITAGASTP~~lI~eVi 172 (187)
..+|||-=+|||...+++++
T Consensus 112 ~~~~Vt~lts~~~~~~~~~~ 131 (221)
T 3exr_A 112 GEIQVELYGDWTYDQAQQWL 131 (221)
T ss_dssp CEEEEECCSSCCHHHHHHHH
T ss_pred ceEEEEEcCCCCHHHHHHHH
Confidence 45777777777766555443
No 260
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.84 E-value=61 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=25.2
Q ss_pred hcHHHHHH-HHHHHHhhhcC--CCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 70 ICHAAQER-QDAVYKLVEEK--IDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 70 IC~AT~~R-Q~av~~La~~~--~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
||.-..+. ++++++++ .+ +|++|+-||---.---...+..++.
T Consensus 61 iv~Dd~~~I~~al~~a~-~~~~~DlVittGG~s~g~~D~t~eal~~~ 106 (178)
T 2pjk_A 61 LVPDDKIKILKAFTDAL-SIDEVDVIISTGGTGYSPTDITVETIRKL 106 (178)
T ss_dssp EECSCHHHHHHHHHHHH-TCTTCCEEEEESCCSSSTTCCHHHHHGGG
T ss_pred EeCCCHHHHHHHHHHHH-hcCCCCEEEECCCCCCCCCcchHHHHHHH
Confidence 44443333 34566666 35 9999999996655444444444433
No 261
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=21.80 E-value=65 Score=24.49 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=24.6
Q ss_pred hhcHHHHHH-HHHHHHhhh-cCCCEEEEEcCCCChhhHHHHHHHHHh
Q 037064 69 TICHAAQER-QDAVYKLVE-EKIDLILVVGGWNSSNTSSLQVIAEDR 113 (187)
Q Consensus 69 TIC~AT~~R-Q~av~~La~-~~~D~miVVGG~nSSNT~rL~eia~~~ 113 (187)
.||.-..+. +++++++++ ..+|++|+-||--=.---...+..++.
T Consensus 50 ~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 50 AVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKV 96 (167)
T ss_dssp EEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHH
Confidence 344443333 345666552 369999999996544333333333333
No 262
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=21.35 E-value=69 Score=25.92 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=22.8
Q ss_pred cCCCChhhHHHHHHHHHhCCC-eE-EeCC
Q 037064 96 GGWNSSNTSSLQVIAEDRGIP-SY-WIDS 122 (187)
Q Consensus 96 GG~nSSNT~rL~eia~~~g~~-t~-~Ie~ 122 (187)
.|+++.+|.+++++.+++|++ || ||-.
T Consensus 34 DG~~~~~t~~il~iL~~~~v~ATF~Fv~g 62 (254)
T 2vyo_A 34 DGPVRGVTDRILNTLDELGVKATFSFTVN 62 (254)
T ss_dssp SCCCTTHHHHHHHHHHHHTCCCEEEECCS
T ss_pred CCCCcccHHHHHHHHHHcCCCEEEEEccC
Confidence 578888999999999999976 78 7754
No 263
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=21.29 E-value=1.8e+02 Score=24.81 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=44.1
Q ss_pred CeEEEEEcC-CCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhc----HHHHHHHHHHHHhhhcCCCEEEEEcCC
Q 037064 25 VKVGIANQT-TMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC----HAAQERQDAVYKLVEEKIDLILVVGGW 98 (187)
Q Consensus 25 ~kv~vvsQT-T~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC----~AT~~RQ~av~~La~~~~D~miVVGG~ 98 (187)
+|+.+|+-. ++.. .-.+.+.+.|++. + .++.+|+.+. ..+- ++.++.+...++|++|-|||=
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~-----g-----~~~~~~~~~~~~p~~~~v--~~~~~~~~~~~~d~IIavGGG 108 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDET-----E-----ISYEIFDEVEENPSFDNV--MKAVERYRNDSFDFVVGLGGG 108 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHT-----T-----CEEEEEEEECSSCBHHHH--HHHHHHHTTSCCSEEEEEESH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHc-----C-----CeEEEeCCccCCCCHHHH--HHHHHHHHhcCCCEEEEeCCh
Confidence 578887754 4432 2456666666531 1 1233344332 2222 233333433579999999998
Q ss_pred CChhhHHHHHHHHH
Q 037064 99 NSSNTSSLQVIAED 112 (187)
Q Consensus 99 nSSNT~rL~eia~~ 112 (187)
..-.+.|.+.....
T Consensus 109 sv~D~AK~iA~~~~ 122 (371)
T 1o2d_A 109 SPMDFAKAVAVLLK 122 (371)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877644
No 264
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.17 E-value=1.2e+02 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCh----hhHHHHHHHH----HhCCCeEEeCCCCCC
Q 037064 88 KIDLILVVGGWNSS----NTSSLQVIAE----DRGIPSYWIDSEKRI 126 (187)
Q Consensus 88 ~~D~miVVGG~nSS----NT~rL~eia~----~~g~~t~~Ie~~~eL 126 (187)
.+|++|+.|+--.. .-..+.++.+ +.+.|.|.|-.--|.
T Consensus 66 ~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD~ 112 (330)
T 3ib7_A 66 RPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDD 112 (330)
T ss_dssp CCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTSC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCCC
Confidence 67777777774322 2223333433 236677766555553
No 265
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=21.05 E-value=1e+02 Score=26.68 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=44.4
Q ss_pred CeEEEEEc-CCCCh-HHHHHHHHHHHHHHhhhcccccccccccccchhcHH-HHHH-HHHHHHhhhcCCCEEEEEcCCCC
Q 037064 25 VKVGIANQ-TTMIK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHA-AQER-QDAVYKLVEEKIDLILVVGGWNS 100 (187)
Q Consensus 25 ~kv~vvsQ-TT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A-T~~R-Q~av~~La~~~~D~miVVGG~nS 100 (187)
+|+.+|+- .++.. .-.+.+.+.|++. .-++.+|+.++.. +.+. ++.++.+....+|++|-|||=..
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~----------g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 113 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKH----------GIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSV 113 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHT----------TCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHc----------CCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhH
Confidence 57888874 44433 2355665656431 1123345554422 2222 23333343457999999999888
Q ss_pred hhhHHHHHHHH
Q 037064 101 SNTSSLQVIAE 111 (187)
Q Consensus 101 SNT~rL~eia~ 111 (187)
-.+.|.+....
T Consensus 114 iD~AK~iA~~~ 124 (407)
T 1vlj_A 114 VDSAKAVAAGA 124 (407)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888877763
No 266
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=21.05 E-value=3.6e+02 Score=22.40 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEe
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVT 158 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGIT 158 (187)
+++..|..+++|+++.-.+ -.....+.-..+..-|.+.+..+....+.- + .|.. ..-+ .-..-.||.
T Consensus 176 ~a~~aL~~G~VD~~~~~~~-------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt--~-~E~G--~~~~-~~~~w~gl~ 242 (312)
T 2f5x_A 176 PAMNDLLGKQVDLMCDQTT-------NTTQQITSGKVKAYAVTSLKRVPTLPDLPT--M-DESG--YKGF-EVGIWHGMW 242 (312)
T ss_dssp HHHHHHHTTSSCEEEEEHH-------HHHHHHHTTSSEEEEECSSSCCTTSTTSCB--T-TTTT--CTTC-CCEEEEEEE
T ss_pred HHHHHHHcCCccEEEechH-------HHHHHHHcCCeEEEEEcCccchhhcCCCCC--H-hhcC--CCCe-eEEEEEEEE
Confidence 6777888789999987543 233344343366777766654432100100 0 0000 0001 112246888
Q ss_pred eCCCCcHHHHHHHHHHHHhc
Q 037064 159 AGASTPDKAIEGVLKKVFEI 178 (187)
Q Consensus 159 AGASTP~~lI~eVi~~l~~~ 178 (187)
+=+.||+.+++.+-+.|.+.
T Consensus 243 ap~g~p~~vv~~l~~al~~~ 262 (312)
T 2f5x_A 243 APKGTPKPVVDKLVKSLQAG 262 (312)
T ss_dssp EETTCCHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHH
Confidence 88999999999999888764
No 267
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=21.03 E-value=75 Score=24.15 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=15.9
Q ss_pred EEEEEcCCC---ChhhHHHHHHH
Q 037064 91 LILVVGGWN---SSNTSSLQVIA 110 (187)
Q Consensus 91 ~miVVGG~n---SSNT~rL~eia 110 (187)
+++|.|+++ -|||.+|++..
T Consensus 4 ilii~gS~r~~~~s~t~~la~~~ 26 (208)
T 2hpv_A 4 LLVVKAHPLTKEESRSVRALETF 26 (208)
T ss_dssp EEEEECCSSCTTTCHHHHHHHHH
T ss_pred EEEEEecCCCCCCCHHHHHHHHH
Confidence 678899988 49998887654
No 268
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=20.81 E-value=1.5e+02 Score=27.66 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCEEEE-EcCCC--Ch-------hh------------HHHHHHHHHhCCCeEEeCCCC
Q 037064 80 AVYKLVEEKIDLILV-VGGWN--SS-------NT------------SSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 80 av~~La~~~~D~miV-VGG~n--SS-------NT------------~rL~eia~~~g~~t~~Ie~~~ 124 (187)
++.+.+ +..|++|| ++|.+ +. +- ..|++-..+.++|+..|..-.
T Consensus 499 ~a~~~a-~~aDvvIv~~~~~~~~~~e~~~l~~~q~~~~~~~~~~~~~~li~~~~~~~~pvVvv~~g~ 564 (642)
T 3bmx_A 499 EHEKQV-KEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLMSLRN 564 (642)
T ss_dssp HHHHHH-HHCSEEEEEECCSSCCCCEETTEECCCCCSSTTHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHH-hhCCEEEEEecCCCCCchhccCCccccccccccccchhHHHHHHHHHHcCCCEEEEecCC
Confidence 344566 47999999 88752 22 22 667776667788888775433
No 269
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.79 E-value=73 Score=23.78 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=16.7
Q ss_pred CEEEEEcCCCChhhHHHHHHHHH
Q 037064 90 DLILVVGGWNSSNTSSLQVIAED 112 (187)
Q Consensus 90 D~miVVGG~nSSNT~rL~eia~~ 112 (187)
-++||.|++ .+||.+|++...+
T Consensus 7 kilii~~S~-~g~T~~la~~i~~ 28 (200)
T 2a5l_A 7 YILVLYYSR-HGATAEMARQIAR 28 (200)
T ss_dssp EEEEEECCS-SSHHHHHHHHHHH
T ss_pred eEEEEEeCC-CChHHHHHHHHHH
Confidence 467888886 7899999876544
No 270
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=20.77 E-value=1.5e+02 Score=22.29 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=35.8
Q ss_pred HHHHHHhhhcCCCEEEEEcCCCCh-----h---hHHHHHHHHHhCCC-eEEeCCCCCCC
Q 037064 78 QDAVYKLVEEKIDLILVVGGWNSS-----N---TSSLQVIAEDRGIP-SYWIDSEKRIG 127 (187)
Q Consensus 78 Q~av~~La~~~~D~miVVGG~nSS-----N---T~rL~eia~~~g~~-t~~Ie~~~eL~ 127 (187)
.+.+.++. ..+|++|-..|.... | +.+|++.|++.+++ -.++.+..-..
T Consensus 54 ~~~~~~~~-~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~ 111 (219)
T 3dqp_A 54 PEEMAKQL-HGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQ 111 (219)
T ss_dssp HHHHHTTT-TTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTC
T ss_pred HHHHHHHH-cCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccC
Confidence 35666777 479999999987553 2 78999999998864 56677765443
No 271
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.73 E-value=3.5e+02 Score=22.42 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhH-----HHHH
Q 037064 34 TMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTS-----SLQV 108 (187)
Q Consensus 34 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~-----rL~e 108 (187)
||+.+|..++++...+....+.+ .+.++-|+.|.+=-+-++...+-.+|+++|+--+-..-|. +..+
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvp--------viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ 124 (300)
T 3eb2_A 53 YLGTAQREAVVRATIEAAQRRVP--------VVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRA 124 (300)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSC--------BEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCCc--------EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Q ss_pred HHHHhCCCeEE
Q 037064 109 IAEDRGIPSYW 119 (187)
Q Consensus 109 ia~~~g~~t~~ 119 (187)
||...+.|.+.
T Consensus 125 va~a~~lPiil 135 (300)
T 3eb2_A 125 IADAVEIPVVI 135 (300)
T ss_dssp HHHHCSSCEEE
T ss_pred HHHHCCCCEEE
No 272
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=20.51 E-value=81 Score=28.03 Aligned_cols=43 Identities=16% Similarity=0.421 Sum_probs=32.7
Q ss_pred HHHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 77 RQDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 77 RQ~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
=.+.+++++ ..||.++|+ ||.-|.=+..|++++++.|..+|-|
T Consensus 85 ~~d~I~~~l-e~~d~~fI~asmGGGTGSG~ap~lae~~ke~g~ltvsV 131 (394)
T 2vaw_A 85 DRERISEVL-EGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAV 131 (394)
T ss_dssp THHHHHHHH-TTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHH-hhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEE
Confidence 356678888 489998887 4455777788999999998776643
No 273
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.48 E-value=52 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=19.5
Q ss_pred HHHHHhhhcCCCEEEEEcCCCChhhHHHHHH
Q 037064 79 DAVYKLVEEKIDLILVVGGWNSSNTSSLQVI 109 (187)
Q Consensus 79 ~av~~La~~~~D~miVVGG~nSSNT~rL~ei 109 (187)
+++++++ .++|++|+-||---.---...+.
T Consensus 54 ~~l~~a~-~~~DlVittGG~g~~~~D~T~ea 83 (172)
T 3kbq_A 54 WAFRVAL-EVSDLVVSSGGLGPTFDDMTVEG 83 (172)
T ss_dssp HHHHHHH-HHCSEEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHH-hcCCEEEEcCCCcCCcccchHHH
Confidence 4566666 36999999999655543333333
No 274
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.45 E-value=2.3e+02 Score=21.30 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhc
Q 037064 2 TKEAFLEKFKKS 13 (187)
Q Consensus 2 ~~~~~~~~~~~~ 13 (187)
+-+++|+.|...
T Consensus 3 ~l~~l~~~~~~~ 14 (161)
T 2yxb_A 3 SLQSTRERVLGT 14 (161)
T ss_dssp ------------
T ss_pred cHHHHHHHHHhh
Confidence 345666766654
No 275
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=20.36 E-value=1.2e+02 Score=28.69 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHhhhcCCCEEEEEcCCCCh----------------hhHHHHHHHH----HhCCCeE
Q 037064 80 AVYKLVEEKIDLILVVGGWNSS----------------NTSSLQVIAE----DRGIPSY 118 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSS----------------NT~rL~eia~----~~g~~t~ 118 (187)
++.++| +..|++||+.|.+++ |-..|.+-.. +.|+|+.
T Consensus 437 ~a~~~a-~~aDvvIv~vg~~~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~~~~~vV 494 (721)
T 2x41_A 437 EIHKLA-KKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494 (721)
T ss_dssp HHHHHH-HHCSEEEEEEECCCBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHH-hcCCEEEEEEeccccccccccCCCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 344666 479999999887643 4456665555 6778865
No 276
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=20.32 E-value=2.8e+02 Score=21.25 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCC
Q 037064 73 AAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSE 123 (187)
Q Consensus 73 AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~ 123 (187)
+..-.+..+..|. ++|+||.++..-|+-|.-=.-.|...|+|.+.+-..
T Consensus 55 ~~~i~~~d~~~i~--~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~ 103 (152)
T 4fyk_A 55 DQFIHEQNLNWLQ--QADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRP 103 (152)
T ss_dssp HHHHHHHHHHHHH--HCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECG
T ss_pred HHHHHHHHHHHHH--HCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence 3444555566664 699999999988887776666677789998876553
No 277
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=20.15 E-value=1.4e+02 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCC
Q 037064 80 AVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEK 124 (187)
Q Consensus 80 av~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~ 124 (187)
++..+....+|++|=|||=..-.+.|.+.. ..++|-+.|-+-.
T Consensus 79 ~~~~~~~~~~D~IIavGGGs~iD~aK~iA~--~~~~p~i~IPTTa 121 (353)
T 3hl0_A 79 AVEAYRAAGADCVVSLGGGSTTGLGKAIAL--RTDAAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHTTCSEEEEEESHHHHHHHHHHHH--HHCCEEEEEECSS
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCCc
Confidence 333343457999999999888888887665 4667777776654
No 278
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=20.09 E-value=1.3e+02 Score=23.05 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=6.7
Q ss_pred CcEEEEeeCC
Q 037064 152 QITIGVTAGA 161 (187)
Q Consensus 152 ~~~IGITAGA 161 (187)
..+|.++=|.
T Consensus 115 ~~~ill~Hg~ 124 (190)
T 1s3l_A 115 DLKFFITHGH 124 (190)
T ss_dssp TEEEEEEESC
T ss_pred CcEEEEECCC
Confidence 3468888764
No 279
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=20.07 E-value=3.6e+02 Score=23.94 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=34.8
Q ss_pred chhcHHHHHHHHHHHHh---hhcCCCEEEEEcCCCChhhHHHHHHHHH-hCCCeEEeCC
Q 037064 68 NTICHAAQERQDAVYKL---VEEKIDLILVVGGWNSSNTSSLQVIAED-RGIPSYWIDS 122 (187)
Q Consensus 68 nTIC~AT~~RQ~av~~L---a~~~~D~miVVGG~nSSNT~rL~eia~~-~g~~t~~Ie~ 122 (187)
.-||+.+..--+++++. .. .++-++|+||- |++.-+.++-.. .|.|.+..+.
T Consensus 403 Egia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGg--aks~~~~Qi~ADvlg~pV~~~~~ 458 (520)
T 4e1j_A 403 EAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGM--VASDWTMQRLSDLLDAPVDRPVI 458 (520)
T ss_dssp HHHHHHHHHHHHHHHHHCC------CCEEEESGG--GGCHHHHHHHHHHHTSCEEEESC
T ss_pred HHHHHHHHHHHHHHHHhhccCC-CcceEEEeCcc--ccCHHHHHHHHHHhCCeEEecCC
Confidence 44888888877888776 42 68899999995 466667776655 5777765543
No 280
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=20.00 E-value=85 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=32.8
Q ss_pred HHHHHHhhhcCCCEEEEE----cCCCChhhHHHHHHHHHhCCCeEEe
Q 037064 78 QDAVYKLVEEKIDLILVV----GGWNSSNTSSLQVIAEDRGIPSYWI 120 (187)
Q Consensus 78 Q~av~~La~~~~D~miVV----GG~nSSNT~rL~eia~~~g~~t~~I 120 (187)
.+.+++++ ..||.++|. ||.-|.=+.-|++++++.|..+|-|
T Consensus 86 ~d~Ir~~l-e~~D~ffI~asmGGGTGSG~apvla~~ake~g~ltvsV 131 (382)
T 2vxy_A 86 KEQIEEAL-KGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGV 131 (382)
T ss_dssp HHHHHHHH-TTCSEEEEEEESSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHH-hhCCEEEEEeccCCCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 57788888 589998887 4455777889999999998776643
Done!