BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037065
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 37/328 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGF 80
+++G G SGL+ L + GL +IL+ W+H + L L P + +P +
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPM 65
Query: 81 PENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDS-EYISKW 139
P + YP + + +AY+ Y + + + ++ H RV +D +++++
Sbjct: 66 PASQGPYPARAEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFGERLRVVARDGRQWLARA 123
Query: 140 LVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLC 199
++ ATG E P+ GL+ F G LH++ Y + + F +V +IG GNSG ++ ++
Sbjct: 124 VISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEV- 182
Query: 200 RHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKI--LLLMANITLGNTD 257
ST + + P L D + +L T
Sbjct: 183 ------------------------STVAETTWITQHEPAFLADDVDGRVLFERATERWKA 218
Query: 258 QLGLRRPKTGPIELKNITGKTPVLDVGALSQXXXXXXXXXXXXXXXXXNGARFTDGQEKE 317
Q R P P +I PVLD A G ++ DG E+
Sbjct: 219 QQEGREPDLPPGGFGDIVMVPPVLDARARG-----VLAAVPPPARFSPTGMQWADGTERA 273
Query: 318 IDAIILATGYKSNVPTWLKECDFFTKDG 345
DA+I TG++ + + LK D T G
Sbjct: 274 FDAVIWCTGFRPAL-SHLKGLDLVTPQG 300
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGF 80
++VGAG +GL QGL E + + +W Y P C++ +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 81 PENFP-----------KYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWR 127
+F KY T+ + +AY+E A F ++ +F V +A+ D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 128 VQTQDSEYIS-KWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVI 185
V+T + +S ++LVVA G + P GLD+F G ++HT+++ G +F ++V VI
Sbjct: 138 VRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVI 197
Query: 186 GCGNSGME 193
G G+SG++
Sbjct: 198 GTGSSGIQ 205
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGF 80
++VGAG +GL QGL E + + +W Y P C++ +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 81 PENFP-----------KYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWR 127
+F KY T+ + +AY+E A F ++ +F V +A+ D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 128 VQTQDSEYIS-KWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVI 185
V+T + +S ++LVVA G + P GLD+F G ++HT+++ G +F ++V VI
Sbjct: 138 VRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVI 197
Query: 186 GCGNSGME 193
G G+SG++
Sbjct: 198 GTGSSGIQ 205
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGF 80
++VGAG +GL QGL E + + +W Y P C++ +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 81 PENFP-----------KYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWR 127
+F KY T+ + +AY+E A F ++ +F V +A+ D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 128 VQTQDSEYIS-KWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVI 185
V+T + +S ++LVVA G + P GLD+F G ++HT+++ G +F ++V VI
Sbjct: 138 VRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVI 197
Query: 186 GCGNSGME 193
G G+SG++
Sbjct: 198 GTGSSGIQ 205
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 25/213 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPK-QFCELPLFG 79
++VGAG SGL L + G ++E + + +W Y + + ++C +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC----YS 75
Query: 80 FPENF-------PKYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWRVQT 130
F E +Y ++ + + YI A F ++ F V A FD A+ W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 131 QDSEYI-SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVIGCG 188
+ I +++L++A+G+ + P P+ GL F G++ HT + +F Q+V VIG G
Sbjct: 136 NHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTG 195
Query: 189 NSGMEVSLDLCRHNA-------IPHMV--ARNS 212
+SG++VS + + A PH ARN+
Sbjct: 196 SSGIQVSPQIAKQAAELFVFQRTPHFAVPARNA 228
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 25/213 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPK-QFCELPLFG 79
++VGAG SGL L + G ++E + + +W Y + + ++C +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC----YS 75
Query: 80 FPENF-------PKYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWRVQT 130
F E +Y ++ + + YI A F ++ F V A FD A+ W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 131 QDSEYI-SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVIGCG 188
+ I +++L++A+G+ + P P+ GL F G++ HT + +F Q+V VIG G
Sbjct: 136 NHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTG 195
Query: 189 NSGMEVSLDLCRHNA-------IPHMV--ARNS 212
+SG++VS + + A PH ARN+
Sbjct: 196 SSGIQVSPQIAKQAAELFVFQRTPHFAVPARNA 228
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 25/213 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPK-QFCELPLFG 79
++VGAG SGL L + G ++E + + +W Y + + ++C +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC----YS 75
Query: 80 FPENF-------PKYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWRVQT 130
F E +Y ++ + + YI A F ++ F V A FD A+ W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 131 QDSEYI-SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVIGCG 188
+ I +++L++A+G+ + P P+ GL F G++ HT + +F Q+V VIG G
Sbjct: 136 NHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTG 195
Query: 189 NSGMEVSLDLCRHNA-------IPHMV--ARNS 212
+SG++VS + + A PH ARN+
Sbjct: 196 SSGIQVSPQIAKQAAELFVFQRTPHFAVPARNA 228
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 25/213 (11%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPK-QFCELPLFG 79
++VGAG SGL L + G ++E + + +W Y + + ++C +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYC----YS 75
Query: 80 FPENF-------PKYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWRVQT 130
F E +Y ++ + + YI A F ++ F V A FD A+ W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 131 QDSEYI-SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-KSGSEFKNQKVLVIGCG 188
+ I +++L++A+G+ + P P+ GL F G++ HT + +F Q+V VIG G
Sbjct: 136 NHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTG 195
Query: 189 NSGMEVSLDLCRHNA-------IPHMV--ARNS 212
+SG++VS + + A PH ARN+
Sbjct: 196 SSGIQVSPQIAKQAAELFVFQRTPHFAVPARNA 228
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 14/209 (6%)
Query: 2 GSCKVQNDKQTKSVLVHGPIIVGAGPSGL-AVSACLSQQGLPSLILERSDCLASLWKHRT 60
GS + ++ +++GAG G+ AV + GL ++ +++D W
Sbjct: 26 GSLEASMHMTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY--- 82
Query: 61 YDRLKLHLPKQFCELPLFGFPENF-------PKYPTKRQFIAYIESYASHFKIQPKFK-- 111
++R L L F F + Y T+ + + Y+E F ++ FK
Sbjct: 83 WNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFG 142
Query: 112 QAVQTALFDHASGFWRVQTQDSE-YISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSK 170
V +AL+ W V T E Y +K++V A G + FP++ GLD F G +HT+
Sbjct: 143 TEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAA 202
Query: 171 YKSGSEFKNQKVLVIGCGNSGMEVSLDLC 199
+ G ++V VIG G++G +V L
Sbjct: 203 WPEGKSLAGRRVGVIGTGSTGQQVITSLA 231
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 21 IIVGAGPSGL-AVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFG 79
+++GAG G+ AV + GL ++ +++D W ++R L L F
Sbjct: 12 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY---WNRYPGALSDTESHLYRFS 68
Query: 80 FPENF-------PKYPTKRQFIAYIESYASHFKIQPKFK--QAVQTALFDHASGFWRVQT 130
F + Y T+ + + Y+E F ++ FK V +AL+ W V T
Sbjct: 69 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 128
Query: 131 QDSE-YISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGN 189
E Y +K++V A G + FP++ GLD F G +HT+ + G ++V VIG G+
Sbjct: 129 DHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGS 188
Query: 190 SGMEVSLDLC 199
+G +V L
Sbjct: 189 TGQQVITSLA 198
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCE------ 74
+++GAG +G+ + ++Q G+ L +E + + W Y +L
Sbjct: 13 VVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKG 72
Query: 75 -LPLFGFPENFPKYPTKRQFIAYIESYASHFKIQP--KFKQAVQTALFDHASGFWRVQTQ 131
+P + + ENF P + + Y+ A ++ +F V A + W V
Sbjct: 73 IIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD 129
Query: 132 DSEYIS-KWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS-------GSEFKNQKVL 183
+ E ++ ++L+ ATG + PD+ G+D F G H+S++ + G +F ++V
Sbjct: 130 NEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVG 189
Query: 184 VIGCGNSGMEV 194
VIG G +G+++
Sbjct: 190 VIGTGATGVQI 200
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG+A + A S Q +P L+ E+ W + RT
Sbjct: 7 ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSM 66
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L + PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 67 YRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 126
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 127 RHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 186
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G +S ++ ++ A
Sbjct: 187 HDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGA 221
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 GARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 254 NAYFADGSSEKVDAIILCTGYIHHFP 279
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG+A + A S Q +P L+ E+ W + RT
Sbjct: 12 ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSM 71
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L + PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 72 YRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 131
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 132 RHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 191
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G S ++ ++ A
Sbjct: 192 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 GARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 259 NAYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG+A + A S Q +P L+ E+ W + RT
Sbjct: 7 ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSM 66
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L + PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 67 YRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 126
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 127 RHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 186
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G S ++ ++ A
Sbjct: 187 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 GARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 254 NAYFADGSSEKVDAIILCTGYIHHFP 279
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG+A + A S Q +P L+ E+ W + RT
Sbjct: 12 ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSM 71
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 72 YRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 131
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 132 RHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 191
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G S ++ ++ A
Sbjct: 192 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 308 ARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG+A + A S Q +P L+ E+ W + RT
Sbjct: 12 ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSM 71
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 72 YRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 131
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 132 RHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 191
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G S ++ ++ A
Sbjct: 192 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 308 ARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG+A + A S Q +P L+ E+ W + RT
Sbjct: 12 ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSM 71
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 72 YRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 131
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 132 RHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 191
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G S ++ ++ A
Sbjct: 192 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 308 ARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 22 IVGAGPSGLA-VSACLSQQG----LPSLI-LERSDCLASLWKH--RT------------- 60
I+GAGPSG A + A S Q +P L+ E+ W + RT
Sbjct: 7 ILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSX 66
Query: 61 YDRLKLHLPKQFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQP--KFKQAV 114
Y L + PK+ E + F E+F K YP + YI+ ++ +F AV
Sbjct: 67 YRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAV 126
Query: 115 QTALFDHASGFWRVQTQDSEYIS------KWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168
+ F+ S + V QD + ++V TG + P P+ G +KF G +LH
Sbjct: 127 RHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 186
Query: 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203
++ EFK++ VL++G S ++ ++ A
Sbjct: 187 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 GARFTDGQEKEIDAIILATGYKSNVP 332
A F DG +++DAIIL TGY + P
Sbjct: 254 NAYFADGSSEKVDAIILCTGYIHHFP 279
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 30/186 (16%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFCELPLFG 79
+I+G GP+GL + + L +LILE+ + W
Sbjct: 12 VIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEV------------------- 52
Query: 80 FPENFPKYP---TKRQFIAYIESYASHF--KIQPKFKQAVQTALFDHASGFWRVQTQDSE 134
ENFP +P + + A F K++ Q VQ H F V+ + E
Sbjct: 53 --ENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPF-TVRGYNGE 109
Query: 135 YISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEV 194
Y +K +++ATG A+P + G D F G + T G +K +KV+VIG G++ +E
Sbjct: 110 YRAKAVILATG--ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEE 167
Query: 195 SLDLCR 200
+ L +
Sbjct: 168 GMFLTK 173
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 50/225 (22%)
Query: 22 IVGAGPSGLAVS-ACLSQQGLPSLIL-ERSDCLASLWKHRTYDRLKLHLPKQ---FCELP 76
I+GAGPSGL + A L+++ + L ER +W + + KL +P P
Sbjct: 13 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 72
Query: 77 LFGFPENFPKYPT----------------------KRQFIAY-----IESYASHFK--IQ 107
+ G P P YP+ K Q + + I+ Y + +
Sbjct: 73 IVG-PAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL 131
Query: 108 PKFKQAVQTALFDHASGFWRVQ---TQDSEYISK----WLVVATGENAEPVFPDVVGLDK 160
P K A + G W V T+ ISK + + G P P++ GLD+
Sbjct: 132 PFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDE 191
Query: 161 FN----GHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRH 201
+ G VLH+S ++ F + VLV+G +S DL RH
Sbjct: 192 YAKAVPGSVLHSSLFREPELFVGESVLVVGGASSAN----DLVRH 232
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 50/225 (22%)
Query: 22 IVGAGPSGLAVS-ACLSQQGLPSLIL-ERSDCLASLWKHRTYDRLKLHLPKQ---FCELP 76
I+GAGPSGL + A L+++ + L ER +W + + KL +P P
Sbjct: 11 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 70
Query: 77 LFGFPENFPKYPT----------------------KRQFIAY-----IESYASHFK--IQ 107
+ G P P YP+ K Q + + I+ Y + +
Sbjct: 71 IVG-PAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL 129
Query: 108 PKFKQAVQTALFDHASGFWRVQ---TQDSEYISK----WLVVATGENAEPVFPDVVGLDK 160
P K A + G W V T+ ISK + + G P P++ GLD+
Sbjct: 130 PFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDE 189
Query: 161 FN----GHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRH 201
+ G VLH+S ++ F + VLV+G +S DL RH
Sbjct: 190 YAKAVPGSVLHSSLFREPELFVGESVLVVGGASSAN----DLVRH 230
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGF------WRVQTQDSEY 135
EN+P P +E H KF+ + +FDH + +R+ + EY
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEH---ATKFETEI---IFDHINKVDLQNRPFRLNGDNGEY 103
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
L++ATG +A + + + F G + S G ++NQKV VIG GN+ +E +
Sbjct: 104 TCDALIIATGASAR--YLGLPSEEAFKGRGVSASATCDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 196 LDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKI----LLLMANI 251
L L + H++ R GF I + RL+DK+ ++L N
Sbjct: 162 LYLSNIASEVHLIHRRD---------GFRAEKILIK-------RLMDKVENGNIILHTNR 205
Query: 252 TLGNT--DQLGL 261
TL DQ+G+
Sbjct: 206 TLEEVTGDQMGV 217
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 36/192 (18%)
Query: 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGF------WRVQTQDSEY 135
EN+P P +E H KF+ + +FDH + +R+ + EY
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEH---ATKFETEI---IFDHINKVDLQNRPFRLNGDNGEY 103
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
L++ATG +A + + + F G + G ++NQKV VIG GN+ +E +
Sbjct: 104 TCDALIIATGASAR--YLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 196 LDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKI----LLLMANI 251
L L + H++ R GF I + RL+DK+ ++L N
Sbjct: 162 LYLSNIASEVHLIHRRD---------GFRAEKILIK-------RLMDKVENGNIILHTNR 205
Query: 252 TLGNT--DQLGL 261
TL DQ+G+
Sbjct: 206 TLEEVTGDQMGV 217
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 36/192 (18%)
Query: 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGF------WRVQTQDSEY 135
EN+P P +E H KF+ + +FDH + +R+ + EY
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEH---ATKFETEI---IFDHINKVDLQNRPFRLNGDNGEY 103
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
L++ATG +A + + + F G + G ++NQKV VIG GN+ +E +
Sbjct: 104 TCDALIIATGASAR--YLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 196 LDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKI----LLLMANI 251
L L + H++ R GF I + RL+DK+ ++L N
Sbjct: 162 LYLSNIASEVHLIHRRD---------GFRAEKILIK-------RLMDKVENGNIILHTNR 205
Query: 252 TLGNT--DQLGL 261
TL DQ+G+
Sbjct: 206 TLEEVTGDQMGV 217
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLIL----ERSDCLASLWKHR-TYDRLKLHLPKQFCEL 75
+IVGAGP+GL + +GL + E L +L+ + YD
Sbjct: 9 LIVGAGPTGLFAGFYVGXRGLSFRFVDPLPEPGGQLTALYPEKYIYD------------- 55
Query: 76 PLFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQT-QDSE 134
+ GFP+ + K K +E A P + + + ++V T Q +
Sbjct: 56 -VAGFPKVYAKDLVK----GLVEQVAP---FNPVYSLGERAETLEREGDLFKVTTSQGNA 107
Query: 135 YISKWLVVATGENA-EPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGME 193
Y +K +++A G A EP G +F G ++ + KS +EF+ ++VL++G G+S ++
Sbjct: 108 YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVD 166
Query: 194 VSLDLC 199
+L+L
Sbjct: 167 WALNLL 172
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 36/192 (18%)
Query: 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGF------WRVQTQDSEY 135
EN+P P +E H KF+ + +FDH + +R+ + EY
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEH---ATKFETEI---IFDHINKVDLQNRPFRLNGDNGEY 103
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
L++ATG +A + + + F G + G ++NQKV VIG GN+ +E +
Sbjct: 104 TCDALIIATGASAR--YLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 196 LDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKI----LLLMANI 251
L L + H++ R GF I + RL+DK+ ++L N
Sbjct: 162 LYLSNIASEVHLIHRRD---------GFRAEKILIK-------RLMDKVENGNIILHTNR 205
Query: 252 TLGNT--DQLGL 261
TL DQ+G+
Sbjct: 206 TLEEVTGDQMGV 217
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 36/192 (18%)
Query: 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGF------WRVQTQDSEY 135
EN+P P +E H KF+ + +FDH + +R+ + EY
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEH---ATKFETEI---IFDHINKVDLQNRPFRLNGDNGEY 103
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
L++ATG +A + + + F G + G ++NQKV VIG GN+ +E +
Sbjct: 104 TCDALIIATGASAR--YLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 196 LDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKI----LLLMANI 251
L L + H++ R GF I + RL+DK+ ++L N
Sbjct: 162 LYLSNIASEVHLIHRRD---------GFRAEKILIK-------RLMDKVENGNIILHTNR 205
Query: 252 TLGNT--DQLGL 261
TL DQ+G+
Sbjct: 206 TLEEVTGDQMGV 217
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 43/228 (18%)
Query: 10 KQTKSVLVHGPIIVGAGPSGLAVSACL-----SQQGLPSLILERSDCLASLWKHRTY--- 61
+ T + +VH I VG GPS +A++ L +Q L L L++ W T
Sbjct: 23 QATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQ 80
Query: 62 DRLKLHLPKQFCELPLFGFPENFPK-----------------YPTKRQFIAYIESYASHF 104
L++ K L P +F YP + +F Y+ ASHF
Sbjct: 81 SELQISFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHF 140
Query: 105 KIQPKFKQAV---QTALFDHASGFWRVQTQDSE-----YISKWLVVATGENAEPVFPDVV 156
+ Q ++ + V + L RV +++++ ++ LVV+ G P P V
Sbjct: 141 QEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG--GTPRIPQVF 198
Query: 157 GLDKFNGHVLHTSKY------KSGSEFKNQKVLVIGCGNSGMEVSLDL 198
K +G V H S+Y + S K K+ +IG G S E +DL
Sbjct: 199 RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDL 246
>pdb|4FK1|A Chain A, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|B Chain B, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|C Chain C, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|D Chain D, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
Length = 304
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 22 IVGAGPSGLAVSACL----SQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPL 77
++GAGP+GL S L Q L R+ + T D +K P++F E+ L
Sbjct: 11 VIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIK---PEEFKEIGL 67
Query: 78 FGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYI 136
KYP+ + Y E Q ++G + + T+D ++Y+
Sbjct: 68 ----NEVXKYPS----VHYYEKTVVXITKQ--------------STGLFEIVTKDHTKYL 105
Query: 137 SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVI 185
++ +++ATG E FP + + ++ G L + Y G E K+Q +++I
Sbjct: 106 AERVLLATGXQEE--FPSIPNVREYYGKSLFSCPYCDGWELKDQPLIII 152
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 100 YASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLD 159
+A H K ++ V+ G + ++T D Y +K++++ TG + + V G
Sbjct: 78 FADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHL--GVKGES 135
Query: 160 KFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRH 201
++ G G FK ++V+ IG GNSG ++ + +
Sbjct: 136 EYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEY 177
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 34/150 (22%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGF 80
I+VG GPSGL+ + L++ GL L+L+ R K+ K +P
Sbjct: 5 IVVGGGPSGLSAALFLARAGLKVLVLDGG-------------RSKV---KGVSRVP---- 44
Query: 81 PENFPKY---PTKRQFIAYIESYASHF--KIQPKFKQAVQTALFDHASGFWRVQTQDSEY 135
N+P P+ + + +E++A + +++P + V+ G + V+T++
Sbjct: 45 --NYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKGVRD-----XGGVFEVETEEGVE 97
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHV 165
++ L++ T + +P P ++GL + ++
Sbjct: 98 KAERLLLCT--HKDPTLPSLLGLTRRGAYI 125
>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A5L|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A65|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
pdb|4A65|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
Length = 314
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 26/193 (13%)
Query: 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELP 76
+H +I+G+GP+ + L + L ++ Y+ +L
Sbjct: 4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVM---------------YEGFMAGGVAAGGQLT 48
Query: 77 LFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHAS----GFWRVQTQD 132
ENFP +P I E + K+ + T DH F +
Sbjct: 49 TTTIIENFPGFPNG---IDGNELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEG 105
Query: 133 SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSE--FKNQKVLVIGCGNS 190
E ++K +++ATG A+ + V G DK+ + + G+ F+N+ ++V+G G++
Sbjct: 106 KEVLTKSVIIATGATAKRMH--VPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDA 163
Query: 191 GMEVSLDLCRHNA 203
ME +L L ++ +
Sbjct: 164 AMEEALHLTKYGS 176
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 82 ENFPKYPTKRQFIAYIES-YASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWL 140
ENFP +PT I +++ A + T + D ++ +RV + + ++ +
Sbjct: 80 ENFPGFPTGIMGIDLMDNCRAQSVRFGTNILSETVTEV-DFSARPFRVTSDSTTVLADTV 138
Query: 141 VVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSE--FKNQKVLVIGCGNSGMEVSLDL 198
VVATG A ++ G D + + G+ F+N+ + VIG G+S ME L
Sbjct: 139 VVATGAVARRLY--FSGSDTYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEEGNFL 196
Query: 199 CRHNAIPHMVARNS 212
++ + +++ R +
Sbjct: 197 TKYGSQVYIIHRRN 210
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER----SDCLASLWKHR-TYDRLKLHLPKQFCELP 76
I+G GP+G+ + + I+E LA+L+ + YD
Sbjct: 19 IIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYD-------------- 64
Query: 77 LFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYI 136
+ GFPE P A E Y + + + D + R T + Y
Sbjct: 65 VAGFPE-VPAIDLVESLWAQAERYNPDVVLNETVTKYTK---LDDGTFETRTNTGNV-YR 119
Query: 137 SKWLVVATGENA-EPV-FPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEV 194
S+ +++A G A EP P + +D G ++ + KS +FK ++V+++G G+S ++
Sbjct: 120 SRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDW 178
Query: 195 SLDLCRHNAIPHMVAR 210
++ L ++ A +V R
Sbjct: 179 TVGLIKNAASVTLVHR 194
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 124 GFWRVQTQDSEYI-SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKV 182
G +++T + ++ +++ATG + +V G D++ + + G FK ++V
Sbjct: 301 GLHQIETASGAVLKARSIIIATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRV 358
Query: 183 LVIGCGNSGMEVSLDLC 199
VIG GNSG+E ++DL
Sbjct: 359 AVIGGGNSGVEAAIDLA 375
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 76 PLFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEY 135
P F F E ++ + + Y++ A+H+++ F+ V T + ++ + T Y
Sbjct: 76 PAFTFNE---EHISGETYAEYLQVVANHYELNI-FENTVVTNI-SADDAYYTIATTTETY 130
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
+ ++ VATG+ P P G+ H S+ + F + +VIG SG + +
Sbjct: 131 HADYIFVATGDYNFPKKPFKYGI--------HYSEIEDFDNFNKGQYVVIGGNESGFDAA 182
Query: 196 LDLCRH 201
L ++
Sbjct: 183 YQLAKN 188
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 124 GFWRVQTQDSEYI-SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKV 182
G +++T + ++ ++VATG + +V G D++ + + G FK ++V
Sbjct: 90 GLHQIETASGAVLKARSIIVATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRV 147
Query: 183 LVIGCGNSGMEVSLDLC 199
VIG GNSG+E ++DL
Sbjct: 148 AVIGGGNSGVEAAIDLA 164
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFC 73
IVGAGPSGLA + L + GL ++E D + T D L + Q+
Sbjct: 10 IVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFC 73
IVGAGPSGLA + L + GL ++E D + T D L + Q+
Sbjct: 10 IVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFC 73
IVGAGPSGLA + L + GL ++E D + T D L + Q+
Sbjct: 10 IVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 43/198 (21%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFP 81
I+G GP+GL+ ++ G+ + +L + +P + G
Sbjct: 6 IIGGGPAGLSAGLYATRGGVKNAVL-----------------FEKGMPGG----QITGSS 44
Query: 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYI----- 136
E YP ++ ++ ++ +QP +Q + L + RV +DS ++
Sbjct: 45 E-IENYPGVKEVVSGLDF------MQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAED 97
Query: 137 -----SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSG 191
+K +++ATG P + G ++ G + T G +KN++V V+G G++
Sbjct: 98 GKTFEAKSVIIATG--GSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTA 155
Query: 192 MEVSL---DLCRHNAIPH 206
+E ++ ++C+ + H
Sbjct: 156 VEEAIYLANICKKVYLIH 173
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFC 73
+IVGAGPSGL + L + GL +LE D + T D L + Q+
Sbjct: 11 VIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWV 63
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-------LWKHRTYD 62
L PI++G GP GL L+Q G +I+ER + W+ RT +
Sbjct: 106 LTERPIVIGFGPCGLFAGLVLAQXGFNPIIVERGKEVRERTKDTFGFWRKRTLN 159
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERS 49
I+GAGPSGL + L + G+ ++ILER+
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERT 34
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILER 48
I+GAGPSGL + L + G+ ++ILER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 136 ISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVS 195
++K ++V TG + P G D+F G + T G +KN++V V+G G++ +E +
Sbjct: 106 LAKAVIVCTG--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA 163
Query: 196 LDLCRHNAIPHMVAR 210
L L + +++ R
Sbjct: 164 LYLANICSKIYLIHR 178
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 19 GP--IIVGAGPSGLAVSACLSQQGLPS-LILERSDCLASLWKHRTYDRLKLHLPKQFCE 74
GP I+VGAG SG++ + LS+ G+ LILE +D + + + + L + E
Sbjct: 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVE 62
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 19 GP--IIVGAGPSGLAVSACLSQQGLPS-LILERSDCLASLWKHRTYDRLKLHLPKQFCE 74
GP I+VGAG SG++ + LS+ G+ LILE +D + + + + L + E
Sbjct: 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVE 62
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLH 67
I+VGAG G+A L++QG+ +L+++ D + H R+ H
Sbjct: 7 IVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRH 53
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILER 48
IIVGAGP G+ + LS+ G L+LER
Sbjct: 6 IIVGAGPGGIIAADRLSEAGKKVLLLER 33
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILER 48
IIVGAGP G+ + LS+ G L+LER
Sbjct: 11 IIVGAGPGGIIAADRLSEAGKKVLLLER 38
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERSD 50
++GAG GLA++ L G+P L+LE+ D
Sbjct: 6 VIGAGFGGLALAIRLQAAGIPVLLLEQRD 34
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 132 DSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSG 191
+ E +K +++ATG + + V G + G + G+ FKN+++ VIG G+S
Sbjct: 100 NKELTAKAVIIATGAEYKKI--GVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSA 157
Query: 192 ME 193
+E
Sbjct: 158 VE 159
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 168 TSKYK-SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTF 226
T +YK SGSE +++G DLCR +PH V + S++
Sbjct: 26 TERYKDSGSEM-----VLVGLLRGSFMFMADLCREVQVPHEV----------DFMTASSY 70
Query: 227 GIAMALLRWFP-LRLVDK------ILLLMANITLGNT-----DQLGLRRPKTGPI 269
G M+ R L+ +D+ +L++ I GNT + LGLR PK+ I
Sbjct: 71 GSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILGLREPKSLAI 125
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 22 IVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFC 73
IVGAG SGLA + L + GL ++E D + T D L + Q+
Sbjct: 10 IVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
Length = 389
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLH 67
I+VGAG G+A L++QG+ +L+++ D + H R+ H
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRH 53
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLH 67
I+VGAG G+A L++QG+ +L+++ D + H R+ H
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRH 53
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
Length = 389
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLH 67
I+VGAG G+A L++QG+ +L+++ D + H R+ H
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRH 53
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLH 67
I+VGAG G+A L++QG+ +L+++ D + H R+ H
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRH 53
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHL 68
+++G G SGL+ + L++ G+ L+LE D + RTY H+
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG----RTYTIRNEHV 49
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHL 68
+++G G SGL+ + L++ G+ L+LE D + RTY H+
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG----RTYTIRNEHV 49
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHL 68
+++G G SGL+ + L++ G+ L+LE D + RTY H+
Sbjct: 17 VVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG----RTYTIRNEHV 60
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 200 RHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLR--WFPLRLVDKILLLMANITLGNTD 257
R +A+ + ++ V VL +EI GF + A++ W RLV++ ++ +++ L +D
Sbjct: 171 RTHALMRKIGQSPVRVL-KEIDGFVLNRLQYAIISEAW---RLVEEGIVSPSDLDLVMSD 226
Query: 258 QLGLRRPKTGPIELKNITGK 277
LG+R GP+E ++ +
Sbjct: 227 GLGMRYAFIGPLETMHLNAE 246
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53
++VGAG GL+ + L++QG+ L++ER L+
Sbjct: 9 LVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS 41
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 21 IIVGAGPSGLAVSACLSQQGLPSLILERSD 50
I+VGAG G+A L++QG+ +L+++ D
Sbjct: 8 IVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 37
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 159 DKFNGHVLHTSKYKSG-----SEFKNQKVLVIGCGNSGMEVSLDL 198
++++ + LH Y + + KN KV+++GCG G VS+ L
Sbjct: 90 NRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVIL 134
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 159 DKFNGHVLHTSKYKSG-----SEFKNQKVLVIGCGNSGMEVSLDL 198
++++ + LH Y + + KN KV+++GCG G VS+ L
Sbjct: 93 NRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVIL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,116,107
Number of Sequences: 62578
Number of extensions: 503580
Number of successful extensions: 1607
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 135
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)